Query 008480
Match_columns 564
No_of_seqs 205 out of 1084
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 12:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 5E-251 1E-255 1984.9 51.2 555 2-556 2-557 (637)
2 PTZ00386 formyl tetrahydrofola 100.0 1E-245 2E-250 1941.0 49.3 541 7-560 6-548 (625)
3 PRK13507 formate--tetrahydrofo 100.0 6E-234 1E-238 1843.9 45.9 505 11-560 2-510 (587)
4 PF01268 FTHFS: Formate--tetra 100.0 8E-230 2E-234 1815.0 28.5 476 16-556 1-478 (557)
5 COG2759 MIS1 Formyltetrahydrof 100.0 2E-225 5E-230 1738.8 40.1 474 18-556 1-475 (554)
6 KOG4230 C1-tetrahydrofolate sy 100.0 8E-225 2E-229 1764.9 42.1 547 6-555 302-855 (935)
7 PRK13506 formate--tetrahydrofo 100.0 1E-223 3E-228 1766.2 45.2 500 16-560 1-502 (578)
8 PRK13505 formate--tetrahydrofo 100.0 1E-213 2E-218 1692.9 44.9 479 15-559 1-480 (557)
9 cd00477 FTHFS Formyltetrahydro 100.0 4E-214 8E-219 1681.8 41.0 459 32-556 1-461 (524)
10 TIGR03029 EpsG chain length de 96.8 0.0012 2.6E-08 65.5 4.1 51 67-121 101-154 (274)
11 PRK11519 tyrosine kinase; Prov 96.0 0.0073 1.6E-07 69.0 4.9 59 67-132 524-585 (719)
12 TIGR01007 eps_fam capsular exo 95.9 0.0086 1.9E-07 56.9 4.4 52 67-122 15-69 (204)
13 CHL00175 minD septum-site dete 95.9 0.01 2.2E-07 59.2 4.9 55 64-122 10-67 (281)
14 PRK13705 plasmid-partitioning 95.5 0.017 3.6E-07 61.7 4.8 91 28-119 39-155 (388)
15 TIGR01005 eps_transp_fam exopo 95.4 0.013 2.7E-07 66.8 3.9 51 67-121 544-597 (754)
16 PRK09841 cryptic autophosphory 95.2 0.021 4.6E-07 65.3 4.8 51 67-121 529-582 (726)
17 PHA02519 plasmid partition pro 95.2 0.031 6.7E-07 59.9 5.7 91 28-120 39-156 (387)
18 COG2805 PilT Tfp pilus assembl 95.2 0.023 5E-07 60.2 4.5 47 60-112 117-163 (353)
19 cd02033 BchX Chlorophyllide re 95.0 0.033 7.2E-07 58.7 5.2 93 437-549 191-287 (329)
20 TIGR03453 partition_RepA plasm 94.9 0.035 7.6E-07 58.7 5.2 91 29-120 34-153 (387)
21 TIGR00347 bioD dethiobiotin sy 94.6 0.025 5.4E-07 52.0 2.8 35 77-114 2-36 (166)
22 TIGR01968 minD_bact septum sit 94.6 0.042 9.1E-07 53.1 4.4 48 69-120 1-51 (261)
23 COG0489 Mrp ATPases involved i 94.5 0.03 6.6E-07 56.9 3.4 52 68-123 56-110 (265)
24 TIGR03018 pepcterm_TyrKin exop 93.9 0.044 9.6E-07 52.7 3.0 52 67-121 33-87 (207)
25 cd00550 ArsA_ATPase Oxyanion-t 93.6 0.059 1.3E-06 54.0 3.3 47 70-122 1-50 (254)
26 cd01983 Fer4_NifH The Fer4_Nif 93.3 0.075 1.6E-06 42.5 2.9 25 83-108 9-33 (99)
27 PRK13869 plasmid-partitioning 93.3 0.11 2.3E-06 55.9 4.9 42 77-119 126-169 (405)
28 cd02037 MRP-like MRP (Multiple 93.3 0.089 1.9E-06 48.7 3.8 36 76-112 3-38 (169)
29 cd02036 MinD Bacterial cell di 93.0 0.091 2E-06 47.8 3.3 42 77-119 4-48 (179)
30 PF02367 UPF0079: Uncharacteri 92.9 0.096 2.1E-06 48.3 3.4 40 67-120 13-52 (123)
31 cd02117 NifH_like This family 92.3 0.15 3.3E-06 49.0 4.0 39 71-114 2-40 (212)
32 PRK13185 chlL protochlorophyll 92.2 0.16 3.5E-06 50.4 4.1 39 69-112 2-40 (270)
33 COG2894 MinD Septum formation 92.0 0.18 3.9E-06 51.8 4.3 36 69-108 2-37 (272)
34 COG2804 PulE Type II secretory 91.8 0.19 4E-06 56.1 4.4 48 59-113 249-296 (500)
35 TIGR01969 minD_arch cell divis 91.5 0.2 4.4E-06 48.2 3.9 45 76-121 4-51 (251)
36 PF02374 ArsA_ATPase: Anion-tr 91.5 0.12 2.6E-06 53.7 2.4 49 70-123 2-52 (305)
37 cd02040 NifH NifH gene encodes 91.4 0.14 3E-06 50.3 2.6 27 81-108 9-35 (270)
38 PLN02924 thymidylate kinase 91.3 0.25 5.5E-06 49.0 4.4 45 66-116 13-57 (220)
39 TIGR00064 ftsY signal recognit 91.3 0.25 5.4E-06 50.6 4.5 35 68-107 71-105 (272)
40 COG1149 MinD superfamily P-loo 91.2 0.8 1.7E-05 48.0 8.0 171 272-535 108-281 (284)
41 PRK13230 nitrogenase reductase 91.2 0.14 3.1E-06 51.2 2.6 31 81-112 9-39 (279)
42 PRK00698 tmk thymidylate kinas 91.2 0.25 5.4E-06 46.3 4.0 45 68-119 2-46 (205)
43 TIGR01281 DPOR_bchL light-inde 90.9 0.16 3.5E-06 50.3 2.6 31 81-112 8-38 (268)
44 TIGR03815 CpaE_hom_Actino heli 90.5 0.39 8.4E-06 49.3 5.0 51 67-121 91-144 (322)
45 PRK10037 cell division protein 90.3 0.26 5.6E-06 48.7 3.5 44 76-120 5-50 (250)
46 PF01656 CbiA: CobQ/CobB/MinD/ 90.3 0.22 4.8E-06 45.8 2.8 33 78-111 4-36 (195)
47 PRK10436 hypothetical protein; 90.1 0.28 6E-06 54.1 3.8 41 66-113 216-256 (462)
48 TIGR01287 nifH nitrogenase iro 90.1 0.21 4.6E-06 49.8 2.6 27 81-108 8-34 (275)
49 cd01672 TMPK Thymidine monopho 90.0 0.47 1E-05 43.6 4.7 41 70-116 1-41 (200)
50 PRK00300 gmk guanylate kinase; 89.9 0.33 7.2E-06 45.9 3.8 45 67-116 3-47 (205)
51 COG0125 Tmk Thymidylate kinase 89.9 0.41 8.9E-06 47.6 4.4 44 68-117 2-45 (208)
52 TIGR00150 HI0065_YjeE ATPase, 89.8 0.31 6.7E-06 45.5 3.4 43 67-123 20-62 (133)
53 PRK11670 antiporter inner memb 89.8 0.37 8E-06 51.4 4.3 47 74-121 109-158 (369)
54 PHA02518 ParA-like protein; Pr 89.7 0.25 5.5E-06 46.3 2.7 29 79-108 7-35 (211)
55 PRK13235 nifH nitrogenase redu 89.6 0.3 6.6E-06 48.8 3.4 37 80-117 8-44 (274)
56 PRK00090 bioD dithiobiotin syn 89.6 0.25 5.4E-06 47.6 2.6 30 77-107 4-33 (222)
57 PRK10646 ADP-binding protein; 89.4 0.36 7.8E-06 46.2 3.5 28 67-98 26-53 (153)
58 TIGR00041 DTMP_kinase thymidyl 89.2 0.54 1.2E-05 44.0 4.5 40 69-114 3-42 (195)
59 cd02032 Bchl_like This family 89.2 0.39 8.4E-06 47.7 3.7 39 81-120 8-46 (267)
60 PF09140 MipZ: ATPase MipZ; I 89.1 0.18 3.8E-06 52.2 1.3 35 80-115 8-45 (261)
61 PRK13234 nifH nitrogenase redu 89.1 0.34 7.3E-06 49.7 3.3 28 80-108 11-38 (295)
62 PRK13232 nifH nitrogenase redu 89.0 0.36 7.8E-06 48.3 3.3 88 437-539 160-249 (273)
63 PRK13973 thymidylate kinase; P 88.7 0.63 1.4E-05 45.3 4.7 42 69-116 3-44 (213)
64 TIGR03371 cellulose_yhjQ cellu 88.5 0.4 8.6E-06 46.3 3.2 30 78-108 7-36 (246)
65 CHL00072 chlL photochlorophyll 88.2 0.35 7.5E-06 49.7 2.7 32 81-113 8-39 (290)
66 COG0802 Predicted ATPase or ki 88.1 0.49 1.1E-05 45.4 3.5 28 67-98 23-50 (149)
67 PRK04296 thymidine kinase; Pro 88.0 0.64 1.4E-05 44.6 4.2 45 69-120 2-46 (190)
68 TIGR02538 type_IV_pilB type IV 87.8 0.47 1E-05 53.3 3.7 47 60-113 308-354 (564)
69 PF02421 FeoB_N: Ferrous iron 87.6 0.71 1.5E-05 44.1 4.2 58 443-503 98-156 (156)
70 PRK10416 signal recognition pa 87.6 0.69 1.5E-05 48.6 4.5 36 67-107 112-147 (318)
71 PF13500 AAA_26: AAA domain; P 87.6 0.43 9.3E-06 45.3 2.7 32 77-110 5-36 (199)
72 PRK13768 GTPase; Provisional 87.3 0.78 1.7E-05 46.2 4.5 89 448-540 160-252 (253)
73 TIGR02016 BchX chlorophyllide 87.1 0.55 1.2E-05 48.4 3.4 34 81-115 8-41 (296)
74 cd02035 ArsA ArsA ATPase funct 86.9 0.6 1.3E-05 45.5 3.4 27 81-108 7-33 (217)
75 PRK13231 nitrogenase reductase 86.9 0.31 6.8E-06 48.3 1.4 26 81-109 10-35 (264)
76 PRK10818 cell division inhibit 86.3 0.66 1.4E-05 46.0 3.4 36 69-108 2-37 (270)
77 PRK13233 nifH nitrogenase redu 86.0 0.64 1.4E-05 46.3 3.2 27 80-107 9-36 (275)
78 TIGR03263 guanyl_kin guanylate 85.9 0.59 1.3E-05 43.2 2.6 43 69-116 1-43 (180)
79 cd03110 Fer4_NifH_child This p 85.8 0.61 1.3E-05 43.3 2.7 41 77-122 4-47 (179)
80 PF02223 Thymidylate_kin: Thym 85.2 0.52 1.1E-05 44.1 1.9 34 82-117 5-38 (186)
81 cd04165 GTPBP1_like GTPBP1-lik 85.2 2.2 4.7E-05 42.4 6.3 37 438-474 126-162 (224)
82 PF06564 YhjQ: YhjQ protein; 84.9 0.83 1.8E-05 46.8 3.3 34 71-108 3-36 (243)
83 PRK13236 nitrogenase reductase 84.9 0.67 1.4E-05 47.6 2.7 32 81-113 14-45 (296)
84 cd03111 CpaE_like This protein 84.7 0.82 1.8E-05 39.9 2.8 37 76-113 3-40 (106)
85 COG0003 ArsA Predicted ATPase 84.7 0.97 2.1E-05 47.9 3.8 67 70-163 3-71 (322)
86 PRK05480 uridine/cytidine kina 84.6 1.2 2.7E-05 42.6 4.2 26 68-97 5-30 (209)
87 PRK14974 cell division protein 84.6 1.2 2.7E-05 47.3 4.6 36 67-107 138-173 (336)
88 cd02025 PanK Pantothenate kina 84.5 0.87 1.9E-05 45.0 3.2 35 81-139 7-41 (220)
89 PRK08233 hypothetical protein; 84.2 0.75 1.6E-05 42.2 2.5 25 69-97 3-27 (182)
90 PRK12374 putative dithiobiotin 83.9 0.76 1.6E-05 45.3 2.6 33 77-111 7-39 (231)
91 COG1797 CobB Cobyrinic acid a, 83.6 0.67 1.5E-05 51.2 2.2 26 78-104 6-31 (451)
92 TIGR03499 FlhF flagellar biosy 83.4 1.4 3.1E-05 45.1 4.4 27 68-98 193-219 (282)
93 PRK13976 thymidylate kinase; P 83.3 1.4 3E-05 43.5 4.1 40 70-113 1-40 (209)
94 cd01822 Lysophospholipase_L1_l 83.2 30 0.00065 31.3 12.4 107 348-481 23-137 (177)
95 PRK10867 signal recognition pa 83.0 1.4 3.1E-05 48.4 4.4 36 69-109 100-136 (433)
96 cd02042 ParA ParA and ParB of 82.8 1.1 2.3E-05 38.0 2.7 32 81-113 8-39 (104)
97 TIGR02533 type_II_gspE general 82.6 1.2 2.5E-05 49.5 3.6 46 60-112 234-279 (486)
98 cd03115 SRP The signal recogni 82.3 1.2 2.5E-05 41.3 3.0 28 81-109 8-35 (173)
99 TIGR00436 era GTP-binding prot 82.0 14 0.0003 37.3 10.6 89 443-533 100-189 (270)
100 PRK13849 putative crown gall t 81.9 1.4 2.9E-05 44.1 3.5 34 76-110 5-38 (231)
101 TIGR00475 selB selenocysteine- 81.6 6.7 0.00014 44.5 9.1 67 439-508 91-166 (581)
102 PRK12726 flagellar biosynthesi 81.4 1.8 3.9E-05 47.5 4.4 35 67-106 204-238 (407)
103 COG1192 Soj ATPases involved i 81.2 1 2.2E-05 44.3 2.3 33 80-112 10-42 (259)
104 TIGR01420 pilT_fam pilus retra 80.6 2.1 4.6E-05 45.0 4.5 40 68-112 121-160 (343)
105 PRK00131 aroK shikimate kinase 80.5 1.5 3.3E-05 39.6 3.0 28 67-98 2-29 (175)
106 PRK07933 thymidylate kinase; V 80.3 2.7 5.9E-05 41.3 4.9 40 70-115 1-40 (213)
107 PRK00889 adenylylsulfate kinas 79.5 2.5 5.4E-05 39.3 4.1 34 67-105 2-35 (175)
108 COG0532 InfB Translation initi 79.3 6.5 0.00014 44.5 7.9 102 376-508 63-170 (509)
109 PRK00771 signal recognition pa 79.1 2.3 5E-05 46.8 4.4 35 69-108 95-129 (437)
110 cd01828 sialate_O-acetylestera 79.1 15 0.00032 33.4 9.0 72 390-481 46-126 (169)
111 TIGR00379 cobB cobyrinic acid 79.1 1.4 3E-05 48.1 2.7 31 77-108 4-34 (449)
112 PF00009 GTP_EFTU: Elongation 79.0 13 0.00028 34.9 8.8 69 438-507 110-186 (188)
113 PTZ00301 uridine kinase; Provi 78.6 1.9 4.1E-05 42.7 3.2 27 70-100 4-30 (210)
114 PTZ00141 elongation factor 1- 78.2 2.2 4.7E-05 46.7 3.8 71 378-475 95-174 (446)
115 PRK00089 era GTPase Era; Revie 78.0 28 0.00061 35.1 11.4 87 441-533 104-196 (292)
116 KOG0635 Adenosine 5'-phosphosu 77.6 2.8 6.1E-05 41.4 3.9 35 67-106 29-63 (207)
117 cd03109 DTBS Dethiobiotin synt 77.0 2 4.3E-05 39.2 2.6 29 80-110 6-34 (134)
118 cd01131 PilT Pilus retraction 77.0 3.3 7.2E-05 40.0 4.3 38 71-113 3-40 (198)
119 cd04145 M_R_Ras_like M-Ras/R-R 76.9 15 0.00033 32.5 8.2 56 449-507 106-163 (164)
120 PF03029 ATP_bind_1: Conserved 76.9 2 4.4E-05 43.2 2.9 86 438-531 144-232 (238)
121 PF13604 AAA_30: AAA domain; P 76.8 3.7 8.1E-05 39.7 4.6 36 68-108 17-52 (196)
122 PRK06696 uridine kinase; Valid 76.6 2.8 6.1E-05 40.9 3.8 29 69-102 22-50 (223)
123 PRK13896 cobyrinic acid a,c-di 76.6 1.9 4.1E-05 47.4 2.8 28 78-106 7-34 (433)
124 PRK03846 adenylylsulfate kinas 76.5 3.3 7.2E-05 39.7 4.1 35 67-106 22-56 (198)
125 cd02038 FleN-like FleN is a me 76.4 3.2 6.9E-05 37.7 3.8 32 80-112 7-38 (139)
126 cd01394 radB RadB. The archaea 76.2 3.2 6.8E-05 39.9 3.9 36 67-107 17-52 (218)
127 cd04138 H_N_K_Ras_like H-Ras/N 76.1 16 0.00034 32.0 8.0 55 449-506 105-160 (162)
128 TIGR02524 dot_icm_DotB Dot/Icm 76.0 3.7 8E-05 43.9 4.7 43 68-114 133-176 (358)
129 PF01583 APS_kinase: Adenylyls 75.9 3.1 6.7E-05 39.9 3.7 36 68-108 1-36 (156)
130 TIGR00677 fadh2_euk methylenet 75.9 8.6 0.00019 39.8 7.2 128 339-480 138-277 (281)
131 COG0370 FeoB Fe2+ transport sy 75.7 4.2 9.2E-05 47.1 5.3 89 438-532 93-186 (653)
132 TIGR00235 udk uridine kinase. 75.6 2.4 5.3E-05 40.8 3.0 28 66-97 3-30 (207)
133 TIGR02237 recomb_radB DNA repa 75.6 3.4 7.3E-05 39.3 3.9 33 67-104 10-42 (209)
134 cd04127 Rab27A Rab27a subfamil 75.5 8.4 0.00018 35.0 6.3 67 438-507 104-176 (180)
135 TIGR00485 EF-Tu translation el 74.3 14 0.00029 39.6 8.4 42 438-479 115-162 (394)
136 PF07015 VirC1: VirC1 protein; 73.8 2.3 5.1E-05 43.4 2.5 28 79-107 8-35 (231)
137 PLN00043 elongation factor 1-a 73.8 4.8 0.0001 44.2 5.0 77 377-480 94-183 (447)
138 cd00019 AP2Ec AP endonuclease 73.6 27 0.00059 34.9 9.9 98 423-522 71-179 (279)
139 PRK15494 era GTPase Era; Provi 73.1 26 0.00057 37.0 10.1 89 442-536 152-246 (339)
140 PRK12298 obgE GTPase CgtA; Rev 72.8 28 0.00061 37.8 10.4 68 449-521 274-342 (390)
141 smart00763 AAA_PrkA PrkA AAA d 72.4 3.1 6.7E-05 45.0 3.1 79 46-143 52-133 (361)
142 TIGR02322 phosphon_PhnN phosph 72.4 3 6.4E-05 38.8 2.6 26 69-98 1-26 (179)
143 PRK01077 cobyrinic acid a,c-di 72.3 2.2 4.8E-05 46.5 2.1 33 71-107 5-37 (451)
144 PRK00784 cobyric acid synthase 72.0 2.5 5.5E-05 46.6 2.4 32 71-106 4-35 (488)
145 cd04106 Rab23_lke Rab23-like s 72.0 20 0.00043 31.8 7.7 53 449-504 105-159 (162)
146 PRK15452 putative protease; Pr 71.7 17 0.00037 40.3 8.6 98 392-502 3-106 (443)
147 PRK00098 GTPase RsgA; Reviewed 71.2 37 0.0008 35.1 10.5 61 439-502 100-161 (298)
148 cd04112 Rab26 Rab26 subfamily. 70.9 7.3 0.00016 36.6 4.9 58 449-509 105-164 (191)
149 TIGR01425 SRP54_euk signal rec 70.9 5.2 0.00011 44.2 4.4 35 69-108 100-134 (429)
150 PRK05541 adenylylsulfate kinas 70.7 6.8 0.00015 36.4 4.6 35 67-106 5-39 (176)
151 cd01129 PulE-GspE PulE/GspE Th 70.7 5.7 0.00012 40.5 4.4 39 69-113 80-118 (264)
152 PRK10512 selenocysteinyl-tRNA- 70.6 17 0.00037 41.7 8.6 69 438-508 91-166 (614)
153 PRK09554 feoB ferrous iron tra 70.5 11 0.00025 44.3 7.3 83 446-534 108-192 (772)
154 TIGR02525 plasmid_TraJ plasmid 70.4 5.8 0.00012 42.9 4.6 42 69-114 149-190 (372)
155 TIGR00231 small_GTP small GTP- 70.3 24 0.00052 29.8 7.5 59 442-502 100-158 (161)
156 PLN02348 phosphoribulokinase 70.2 6 0.00013 43.4 4.7 25 70-98 50-74 (395)
157 PRK09361 radB DNA repair and r 70.2 5.4 0.00012 38.6 3.9 35 67-106 21-55 (225)
158 PRK15453 phosphoribulokinase; 70.2 5.3 0.00012 42.2 4.1 32 68-104 4-35 (290)
159 PRK13210 putative L-xylulose 5 70.2 46 0.001 33.0 10.5 101 426-531 83-200 (284)
160 PHA00729 NTP-binding motif con 69.9 3.4 7.4E-05 42.0 2.6 24 71-98 19-42 (226)
161 smart00382 AAA ATPases associa 69.7 3.3 7.1E-05 34.2 2.1 26 69-98 2-27 (148)
162 cd04124 RabL2 RabL2 subfamily. 69.7 41 0.00088 30.4 9.3 68 436-507 88-157 (161)
163 TIGR03470 HpnH hopanoid biosyn 69.1 17 0.00036 38.0 7.5 55 438-492 150-204 (318)
164 COG0826 Collagenase and relate 69.0 12 0.00026 40.2 6.6 58 438-502 50-109 (347)
165 cd02023 UMPK Uridine monophosp 68.8 4 8.7E-05 38.7 2.7 17 81-97 7-23 (198)
166 TIGR00959 ffh signal recogniti 68.7 3.9 8.5E-05 45.0 2.9 35 70-108 100-134 (428)
167 COG0194 Gmk Guanylate kinase [ 68.7 5.5 0.00012 39.8 3.7 46 68-119 3-48 (191)
168 cd02028 UMPK_like Uridine mono 68.2 5.3 0.00012 38.1 3.4 24 71-98 1-24 (179)
169 cd03174 DRE_TIM_metallolyase D 68.0 83 0.0018 30.9 11.8 106 435-543 113-222 (265)
170 PF01261 AP_endonuc_2: Xylose 67.8 33 0.00072 31.5 8.5 91 427-521 62-166 (213)
171 PRK05632 phosphate acetyltrans 67.8 3.7 8E-05 47.3 2.6 34 72-110 5-38 (684)
172 cd00227 CPT Chloramphenicol (C 67.7 4.9 0.00011 37.6 3.0 26 69-98 2-27 (175)
173 PF00448 SRP54: SRP54-type pro 67.7 4.7 0.0001 39.4 3.0 25 81-106 9-33 (196)
174 PRK06278 cobyrinic acid a,c-di 67.6 4 8.6E-05 45.5 2.8 24 72-98 241-264 (476)
175 cd04107 Rab32_Rab38 Rab38/Rab3 67.6 35 0.00076 32.2 8.8 59 448-508 108-168 (201)
176 PF05729 NACHT: NACHT domain 67.5 5.2 0.00011 35.4 3.0 25 70-98 1-25 (166)
177 TIGR00676 fadh2 5,10-methylene 67.4 13 0.00028 38.1 6.1 102 352-460 147-261 (272)
178 PRK05703 flhF flagellar biosyn 67.3 7.4 0.00016 42.6 4.7 26 68-97 220-245 (424)
179 COG1703 ArgK Putative periplas 67.3 8 0.00017 41.5 4.7 40 74-115 53-92 (323)
180 PF13245 AAA_19: Part of AAA d 67.3 5.3 0.00011 33.6 2.8 25 69-97 10-34 (76)
181 PTZ00327 eukaryotic translatio 66.9 21 0.00046 39.6 8.1 99 377-508 126-233 (460)
182 cd00009 AAA The AAA+ (ATPases 66.7 9.7 0.00021 31.9 4.4 28 67-98 17-44 (151)
183 cd03278 ABC_SMC_barmotin Barmo 66.6 3.8 8.3E-05 39.6 2.1 58 44-117 5-62 (197)
184 PRK07667 uridine kinase; Provi 66.6 7.9 0.00017 37.2 4.2 30 69-103 17-46 (193)
185 cd00046 DEXDc DEAD-like helica 66.5 5.6 0.00012 33.0 2.8 18 81-98 8-25 (144)
186 PF13614 AAA_31: AAA domain; P 66.4 6.1 0.00013 35.4 3.3 33 70-106 1-33 (157)
187 TIGR00455 apsK adenylylsulfate 66.4 8 0.00017 36.3 4.1 33 67-104 16-48 (184)
188 cd04163 Era Era subfamily. Er 66.3 33 0.00071 29.6 7.7 62 441-504 102-165 (168)
189 PRK13764 ATPase; Provisional 65.9 7 0.00015 45.0 4.3 38 69-112 257-294 (602)
190 PF13086 AAA_11: AAA domain; P 65.3 5.3 0.00012 37.1 2.7 23 71-97 19-41 (236)
191 TIGR03881 KaiC_arch_4 KaiC dom 65.3 7.8 0.00017 37.5 3.9 33 67-105 18-51 (229)
192 PRK09856 fructoselysine 3-epim 65.3 59 0.0013 32.2 10.2 60 428-489 81-151 (275)
193 PRK13886 conjugal transfer pro 65.1 8.5 0.00018 39.5 4.4 37 80-118 10-46 (241)
194 PRK06852 aldolase; Validated 65.1 60 0.0013 34.6 10.6 105 435-543 152-265 (304)
195 PF00625 Guanylate_kin: Guanyl 65.0 5.4 0.00012 37.6 2.8 43 69-115 2-44 (183)
196 COG0529 CysC Adenylylsulfate k 64.8 8.5 0.00018 38.7 4.1 36 67-107 21-56 (197)
197 KOG3347 Predicted nucleotide k 64.7 5.2 0.00011 39.4 2.6 23 72-98 10-32 (176)
198 cd01890 LepA LepA subfamily. 64.7 23 0.0005 32.1 6.7 61 447-507 116-176 (179)
199 PF00485 PRK: Phosphoribulokin 64.5 4.7 0.0001 38.4 2.2 29 72-105 2-30 (194)
200 COG1213 Predicted sugar nucleo 64.2 14 0.0003 38.2 5.6 61 438-504 33-96 (239)
201 PRK14722 flhF flagellar biosyn 64.2 9.4 0.0002 41.5 4.7 33 67-103 135-167 (374)
202 PF13207 AAA_17: AAA domain; P 64.2 4.3 9.3E-05 34.9 1.8 22 72-97 2-23 (121)
203 cd00154 Rab Rab family. Rab G 64.0 33 0.00071 29.4 7.2 63 438-503 90-157 (159)
204 PRK12724 flagellar biosynthesi 63.8 8.4 0.00018 42.8 4.3 37 68-108 222-258 (432)
205 cd04501 SGNH_hydrolase_like_4 63.5 78 0.0017 29.1 10.0 51 428-481 77-140 (183)
206 TIGR03420 DnaA_homol_Hda DnaA 63.2 10 0.00022 36.1 4.3 33 67-104 36-68 (226)
207 COG0283 Cmk Cytidylate kinase 62.6 4.1 8.8E-05 41.6 1.5 18 81-98 12-29 (222)
208 PRK06067 flagellar accessory p 62.6 11 0.00024 36.8 4.5 42 66-112 22-64 (234)
209 COG2313 IndA Uncharacterized e 62.6 36 0.00077 36.1 8.2 104 345-480 107-226 (310)
210 cd01897 NOG NOG1 is a nucleola 62.5 32 0.0007 30.7 7.1 54 450-506 113-166 (168)
211 PF00437 T2SE: Type II/IV secr 61.7 10 0.00023 37.7 4.2 39 68-112 126-164 (270)
212 PRK14738 gmk guanylate kinase; 61.6 9.2 0.0002 37.2 3.7 26 65-94 9-34 (206)
213 PRK07259 dihydroorotate dehydr 61.4 84 0.0018 32.3 10.7 92 447-543 88-189 (301)
214 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 61.3 25 0.00054 31.5 6.2 69 436-507 90-163 (166)
215 PRK07565 dihydroorotate dehydr 61.2 64 0.0014 33.9 10.0 108 434-546 84-200 (334)
216 COG0771 MurD UDP-N-acetylmuram 61.1 9.3 0.0002 42.5 4.0 98 29-161 83-193 (448)
217 TIGR00750 lao LAO/AO transport 61.0 13 0.00029 38.3 4.9 41 67-112 32-72 (300)
218 cd00945 Aldolase_Class_I Class 60.5 55 0.0012 30.2 8.4 99 438-543 98-201 (201)
219 cd01866 Rab2 Rab2 subfamily. 59.8 25 0.00055 31.9 6.1 66 438-506 94-164 (168)
220 PRK06547 hypothetical protein; 59.8 7 0.00015 37.5 2.5 25 69-97 15-39 (172)
221 TIGR02493 PFLA pyruvate format 59.5 22 0.00048 34.6 6.0 43 438-480 144-188 (235)
222 TIGR00542 hxl6Piso_put hexulos 59.4 56 0.0012 32.8 8.9 87 427-521 84-184 (279)
223 cd02034 CooC The accessory pro 59.4 7.6 0.00016 35.0 2.5 42 81-123 7-49 (116)
224 PF13238 AAA_18: AAA domain; P 59.2 8.4 0.00018 32.8 2.7 22 72-97 1-22 (129)
225 PRK13946 shikimate kinase; Pro 58.8 6.9 0.00015 37.1 2.3 26 69-98 10-35 (184)
226 PRK06761 hypothetical protein; 58.8 10 0.00022 39.8 3.6 39 69-113 3-41 (282)
227 cd01834 SGNH_hydrolase_like_2 58.8 1.2E+02 0.0026 27.5 10.2 117 348-481 18-149 (191)
228 PRK14527 adenylate kinase; Pro 58.6 8.7 0.00019 36.4 2.9 28 67-98 4-31 (191)
229 cd02029 PRK_like Phosphoribulo 58.6 9.4 0.0002 40.1 3.4 28 72-104 2-29 (277)
230 PF03205 MobB: Molybdopterin g 58.6 21 0.00046 33.1 5.4 48 71-123 2-49 (140)
231 KOG1207 Diacetyl reductase/L-x 58.4 11 0.00024 38.1 3.7 88 68-164 6-132 (245)
232 cd00958 DhnA Class I fructose- 58.4 1.3E+02 0.0029 29.5 11.2 90 446-547 118-218 (235)
233 PRK13975 thymidylate kinase; P 58.0 8.5 0.00018 36.1 2.7 26 69-98 2-27 (196)
234 TIGR00036 dapB dihydrodipicoli 57.8 31 0.00067 35.2 6.9 66 438-507 80-145 (266)
235 PRK12289 GTPase RsgA; Reviewed 57.6 37 0.00081 36.5 7.7 63 439-504 109-171 (352)
236 PRK06762 hypothetical protein; 57.4 8.9 0.00019 35.1 2.7 25 69-97 2-26 (166)
237 smart00518 AP2Ec AP endonuclea 57.2 90 0.0019 31.0 9.9 96 424-521 71-175 (273)
238 cd00071 GMPK Guanosine monopho 57.2 5.6 0.00012 36.3 1.3 35 81-115 7-41 (137)
239 KOG1145 Mitochondrial translat 57.2 21 0.00045 41.3 5.9 129 342-508 161-316 (683)
240 TIGR03880 KaiC_arch_3 KaiC dom 56.7 17 0.00037 35.2 4.6 40 67-111 14-54 (224)
241 PRK13209 L-xylulose 5-phosphat 56.7 1E+02 0.0022 30.8 10.1 90 426-520 88-188 (283)
242 PLN02165 adenylate isopentenyl 56.7 9 0.0002 41.1 2.9 29 66-98 40-68 (334)
243 cd01894 EngA1 EngA1 subfamily. 56.6 42 0.0009 29.2 6.6 58 443-505 98-155 (157)
244 cd04139 RalA_RalB RalA/RalB su 56.4 57 0.0012 28.7 7.5 67 438-507 92-161 (164)
245 cd01859 MJ1464 MJ1464. This f 56.2 60 0.0013 29.4 7.8 60 447-509 38-97 (156)
246 PRK05439 pantothenate kinase; 55.8 9.8 0.00021 40.3 3.0 42 71-140 88-129 (311)
247 cd00881 GTP_translation_factor 55.7 43 0.00093 30.2 6.8 64 441-507 105-186 (189)
248 PF06068 TIP49: TIP49 C-termin 55.6 8.3 0.00018 42.4 2.5 27 68-98 49-75 (398)
249 cd04136 Rap_like Rap-like subf 55.5 54 0.0012 28.9 7.3 55 449-506 105-161 (163)
250 TIGR03878 thermo_KaiC_2 KaiC d 55.4 15 0.00032 37.2 4.1 34 67-105 34-67 (259)
251 PRK04040 adenylate kinase; Pro 55.3 10 0.00022 36.7 2.8 25 69-97 2-26 (188)
252 smart00175 RAB Rab subfamily o 55.3 38 0.00081 29.9 6.2 56 449-507 104-161 (164)
253 PRK03839 putative kinase; Prov 55.2 9.6 0.00021 35.6 2.6 24 71-98 2-25 (180)
254 TIGR00708 cobA cob(I)alamin ad 55.0 12 0.00025 36.7 3.2 36 67-108 4-39 (173)
255 COG2229 Predicted GTPase [Gene 54.8 29 0.00063 34.8 5.9 30 451-481 122-154 (187)
256 COG1855 ATPase (PilT family) [ 54.8 13 0.00028 42.2 3.8 49 56-112 252-300 (604)
257 PF13191 AAA_16: AAA ATPase do 54.4 12 0.00027 33.9 3.1 30 66-99 21-50 (185)
258 cd00561 CobA_CobO_BtuR ATP:cor 54.4 12 0.00026 36.1 3.1 27 80-107 9-35 (159)
259 PTZ00369 Ras-like protein; Pro 54.3 65 0.0014 30.2 7.9 56 449-507 109-166 (189)
260 PRK09435 membrane ATPase/prote 54.0 53 0.0011 35.2 8.1 89 58-156 44-144 (332)
261 PRK05306 infB translation init 53.9 37 0.0008 40.4 7.5 64 441-506 380-450 (787)
262 PRK04308 murD UDP-N-acetylmura 53.8 15 0.00033 39.4 4.1 31 68-105 109-139 (445)
263 cd01821 Rhamnogalacturan_acety 53.8 1.3E+02 0.0029 28.2 10.0 52 427-481 87-148 (198)
264 PRK02006 murD UDP-N-acetylmura 53.8 15 0.00033 40.2 4.2 32 69-107 121-152 (498)
265 KOG1144 Translation initiation 53.8 16 0.00035 43.5 4.5 103 376-509 548-688 (1064)
266 TIGR00176 mobB molybdopterin-g 53.4 11 0.00024 35.5 2.7 24 82-106 8-31 (155)
267 PF13671 AAA_33: AAA domain; P 53.2 11 0.00024 33.1 2.5 23 71-97 1-23 (143)
268 PLN02772 guanylate kinase 53.1 12 0.00025 41.3 3.2 69 47-119 110-181 (398)
269 PRK13813 orotidine 5'-phosphat 53.0 1.5E+02 0.0033 28.8 10.5 45 438-482 94-142 (215)
270 KOG1970 Checkpoint RAD17-RFC c 52.8 9.6 0.00021 43.8 2.5 30 64-97 105-134 (634)
271 cd04101 RabL4 RabL4 (Rab-like4 52.6 33 0.00072 30.5 5.5 55 449-506 106-162 (164)
272 PRK13974 thymidylate kinase; P 52.5 21 0.00046 34.7 4.6 43 69-116 3-49 (212)
273 COG0857 Pta BioD-like N-termin 52.5 11 0.00023 40.9 2.6 27 78-105 8-34 (354)
274 cd00983 recA RecA is a bacter 52.5 15 0.00034 39.1 3.8 69 31-106 10-87 (325)
275 TIGR00554 panK_bact pantothena 52.4 13 0.00027 39.1 3.1 36 81-140 70-105 (290)
276 cd02033 BchX Chlorophyllide re 52.2 41 0.00089 35.9 6.9 51 67-122 29-82 (329)
277 PLN02748 tRNA dimethylallyltra 52.1 11 0.00024 42.2 2.8 84 66-158 19-106 (468)
278 COG4240 Predicted kinase [Gene 52.1 12 0.00026 39.2 2.9 40 67-109 46-85 (300)
279 cd01130 VirB11-like_ATPase Typ 52.0 11 0.00024 35.9 2.4 27 67-97 23-49 (186)
280 PRK04663 murD UDP-N-acetylmura 52.0 16 0.00036 39.3 4.0 31 69-106 108-138 (438)
281 PRK08154 anaerobic benzoate ca 52.0 14 0.0003 38.4 3.4 26 68-97 132-157 (309)
282 PF00004 AAA: ATPase family as 51.9 8.3 0.00018 33.0 1.4 18 81-98 6-23 (132)
283 cd01854 YjeQ_engC YjeQ/EngC. 51.9 53 0.0012 33.8 7.5 63 438-503 97-159 (287)
284 cd01867 Rab8_Rab10_Rab13_like 51.7 72 0.0016 28.8 7.6 56 449-507 107-164 (167)
285 cd00959 DeoC 2-deoxyribose-5-p 51.7 71 0.0015 31.2 8.0 46 450-496 116-161 (203)
286 TIGR02768 TraA_Ti Ti-type conj 51.6 17 0.00036 42.6 4.3 35 69-108 368-402 (744)
287 PRK12723 flagellar biosynthesi 51.6 19 0.00041 39.3 4.4 26 69-98 174-199 (388)
288 cd01879 FeoB Ferrous iron tran 51.5 49 0.0011 28.9 6.3 59 446-507 97-156 (158)
289 PF01113 DapB_N: Dihydrodipico 51.5 21 0.00046 32.2 4.1 37 438-477 79-115 (124)
290 PLN02840 tRNA dimethylallyltra 51.4 11 0.00024 41.7 2.6 28 67-98 19-46 (421)
291 PF03215 Rad17: Rad17 cell cyc 51.3 13 0.00027 42.1 3.1 29 66-98 42-70 (519)
292 cd04115 Rab33B_Rab33A Rab33B/R 50.9 87 0.0019 28.5 8.0 57 449-506 108-167 (170)
293 cd01881 Obg_like The Obg-like 50.8 63 0.0014 28.8 7.0 54 449-505 119-174 (176)
294 cd00984 DnaB_C DnaB helicase C 50.6 20 0.00044 34.7 4.1 28 66-97 10-37 (242)
295 smart00174 RHO Rho (Ras homolo 50.5 1.1E+02 0.0023 27.6 8.5 63 443-507 93-171 (174)
296 TIGR00487 IF-2 translation ini 50.4 44 0.00095 38.4 7.2 65 441-506 178-248 (587)
297 cd04740 DHOD_1B_like Dihydroor 50.3 1.8E+02 0.004 29.6 11.1 98 441-543 79-186 (296)
298 cd01891 TypA_BipA TypA (tyrosi 50.3 77 0.0017 29.8 7.8 35 443-477 110-147 (194)
299 cd04175 Rap1 Rap1 subgroup. T 50.2 59 0.0013 29.1 6.7 56 449-507 105-162 (164)
300 PRK01368 murD UDP-N-acetylmura 50.1 18 0.0004 39.6 4.1 80 68-161 103-184 (454)
301 PRK12727 flagellar biosynthesi 50.1 20 0.00043 41.2 4.4 28 67-98 348-375 (559)
302 cd01122 GP4d_helicase GP4d_hel 50.1 19 0.00041 35.7 3.9 27 67-97 28-54 (271)
303 TIGR03598 GTPase_YsxC ribosome 50.1 36 0.00078 31.6 5.5 36 444-479 123-162 (179)
304 PRK14106 murD UDP-N-acetylmura 50.0 25 0.00053 37.6 4.9 30 69-105 108-137 (450)
305 TIGR03574 selen_PSTK L-seryl-t 49.9 17 0.00037 36.0 3.5 31 71-106 1-31 (249)
306 cd00876 Ras Ras family. The R 49.5 54 0.0012 28.5 6.3 65 438-505 91-158 (160)
307 cd02020 CMPK Cytidine monophos 49.5 9.7 0.00021 33.5 1.6 18 81-98 7-24 (147)
308 TIGR00539 hemN_rel putative ox 49.5 55 0.0012 34.6 7.3 80 402-485 103-186 (360)
309 smart00173 RAS Ras subfamily o 49.4 1.1E+02 0.0023 27.3 8.2 56 449-507 104-161 (164)
310 PF02219 MTHFR: Methylenetetra 49.4 12 0.00027 38.3 2.5 120 346-479 154-287 (287)
311 COG0132 BioD Dethiobiotin synt 49.3 14 0.0003 37.6 2.7 33 70-106 3-35 (223)
312 PRK08533 flagellar accessory p 49.2 21 0.00046 35.5 4.1 33 67-104 22-54 (230)
313 PRK08227 autoinducer 2 aldolas 49.0 1.5E+02 0.0033 31.0 10.2 98 435-543 125-226 (264)
314 cd04113 Rab4 Rab4 subfamily. 49.0 71 0.0015 28.4 7.0 55 447-504 102-158 (161)
315 cd04132 Rho4_like Rho4-like su 48.9 96 0.0021 28.5 8.1 58 449-508 104-167 (187)
316 cd04104 p47_IIGP_like p47 (47- 48.8 79 0.0017 30.2 7.7 68 441-508 98-184 (197)
317 PF13555 AAA_29: P-loop contai 48.8 22 0.00048 29.5 3.4 43 44-97 5-47 (62)
318 TIGR01087 murD UDP-N-acetylmur 48.7 20 0.00044 38.2 4.0 32 68-106 101-132 (433)
319 PF13173 AAA_14: AAA domain 48.7 17 0.00038 32.3 3.0 26 68-97 1-26 (128)
320 PRK04165 acetyl-CoA decarbonyl 48.5 34 0.00074 38.2 5.8 88 382-487 131-233 (450)
321 TIGR00262 trpA tryptophan synt 48.4 1.9E+02 0.0042 29.6 10.8 146 401-555 26-195 (256)
322 TIGR01313 therm_gnt_kin carboh 48.2 9.1 0.0002 35.0 1.2 17 81-97 6-22 (163)
323 PF00142 Fer4_NifH: 4Fe-4S iro 48.2 12 0.00026 39.4 2.2 102 438-554 161-266 (273)
324 TIGR03849 arch_ComA phosphosul 48.2 1.9E+02 0.004 30.1 10.6 94 439-543 43-154 (237)
325 PF01202 SKI: Shikimate kinase 48.2 10 0.00022 35.1 1.5 16 83-98 2-17 (158)
326 TIGR00437 feoB ferrous iron tr 48.1 45 0.00097 38.2 6.8 59 446-507 95-154 (591)
327 PRK14737 gmk guanylate kinase; 48.1 18 0.0004 34.9 3.3 45 67-116 2-46 (186)
328 TIGR02012 tigrfam_recA protein 48.0 20 0.00043 38.2 3.8 69 30-105 9-86 (321)
329 COG1348 NifH Nitrogenase subun 47.9 15 0.00033 38.5 2.8 106 438-558 162-271 (278)
330 TIGR03877 thermo_KaiC_1 KaiC d 47.8 26 0.00056 34.7 4.4 39 67-111 19-59 (237)
331 PRK10536 hypothetical protein; 47.6 30 0.00065 36.2 4.9 37 69-110 74-111 (262)
332 PRK13948 shikimate kinase; Pro 47.6 17 0.00036 35.4 2.9 28 67-98 8-35 (182)
333 cd03110 Fer4_NifH_child This p 47.6 58 0.0013 30.2 6.4 41 440-481 133-173 (179)
334 COG0012 Predicted GTPase, prob 47.5 49 0.0011 36.3 6.7 98 449-559 205-308 (372)
335 PRK09354 recA recombinase A; P 47.4 21 0.00045 38.6 3.8 69 30-105 14-91 (349)
336 cd01863 Rab18 Rab18 subfamily. 47.3 81 0.0017 27.9 7.1 55 448-505 104-159 (161)
337 PRK14494 putative molybdopteri 47.3 21 0.00045 36.3 3.7 33 71-108 3-35 (229)
338 cd00878 Arf_Arl Arf (ADP-ribos 47.3 69 0.0015 28.4 6.6 56 448-503 98-155 (158)
339 PRK08084 DNA replication initi 47.1 22 0.00049 35.3 3.8 42 59-105 35-76 (235)
340 PLN02495 oxidoreductase, actin 46.9 1.6E+02 0.0034 32.4 10.5 116 426-547 86-218 (385)
341 PRK01438 murD UDP-N-acetylmura 46.9 22 0.00047 38.6 4.0 33 68-107 121-153 (480)
342 cd01673 dNK Deoxyribonucleosid 46.9 13 0.00028 34.9 2.1 32 71-113 1-32 (193)
343 TIGR00126 deoC deoxyribose-pho 46.8 91 0.002 31.4 8.0 48 450-498 117-164 (211)
344 PF00910 RNA_helicase: RNA hel 46.7 14 0.0003 32.3 2.0 77 81-168 6-85 (107)
345 TIGR03471 HpnJ hopanoid biosyn 46.7 46 0.00099 36.4 6.4 77 401-481 289-368 (472)
346 PHA02096 hypothetical protein 46.7 16 0.00034 32.6 2.3 35 426-460 39-75 (103)
347 COG4088 Predicted nucleotide k 46.6 18 0.00038 37.6 3.0 24 71-98 3-26 (261)
348 PF04055 Radical_SAM: Radical 46.5 52 0.0011 28.6 5.6 39 436-474 126-165 (166)
349 cd01983 Fer4_NifH The Fer4_Nif 46.5 1E+02 0.0023 24.3 7.0 50 349-403 13-69 (99)
350 PF07005 DUF1537: Protein of u 46.5 18 0.00038 35.3 3.0 50 428-481 10-59 (223)
351 COG1936 Predicted nucleotide k 46.4 11 0.00025 37.4 1.6 27 71-106 2-28 (180)
352 cd00877 Ran Ran (Ras-related n 46.4 91 0.002 28.5 7.5 63 441-508 96-159 (166)
353 PRK06526 transposase; Provisio 46.4 12 0.00027 38.1 1.9 33 69-106 98-130 (254)
354 PRK06217 hypothetical protein; 46.3 14 0.0003 35.0 2.1 22 72-97 4-25 (183)
355 PRK13833 conjugal transfer pro 46.3 27 0.00059 37.2 4.5 41 69-113 144-184 (323)
356 PRK09183 transposase/IS protei 46.3 28 0.0006 35.5 4.4 35 67-106 100-134 (259)
357 PRK04213 GTP-binding protein; 46.3 1.1E+02 0.0024 28.6 8.2 62 443-508 123-192 (201)
358 cd01888 eIF2_gamma eIF2-gamma 46.2 75 0.0016 30.5 7.2 66 440-508 126-199 (203)
359 cd01861 Rab6 Rab6 subfamily. 46.0 74 0.0016 28.1 6.6 67 436-505 88-159 (161)
360 PRK01184 hypothetical protein; 45.9 15 0.00032 34.3 2.3 33 70-111 2-37 (184)
361 COG2909 MalT ATP-dependent tra 45.8 13 0.00028 44.5 2.2 36 56-95 24-59 (894)
362 COG1072 CoaA Panthothenate kin 45.6 17 0.00038 38.4 2.9 39 76-139 86-124 (283)
363 TIGR01448 recD_rel helicase, p 45.5 23 0.0005 41.4 4.1 29 69-102 338-366 (720)
364 PRK00652 lpxK tetraacyldisacch 45.2 17 0.00037 38.7 2.8 38 70-110 50-87 (325)
365 cd03114 ArgK-like The function 45.2 24 0.00051 32.9 3.4 32 81-113 7-38 (148)
366 PRK14493 putative bifunctional 45.2 24 0.00052 36.6 3.8 34 71-111 3-36 (274)
367 TIGR00313 cobQ cobyric acid sy 45.1 15 0.00033 40.7 2.5 29 77-106 3-31 (475)
368 cd01870 RhoA_like RhoA-like su 45.1 1.6E+02 0.0034 26.6 8.7 55 450-506 105-173 (175)
369 PRK03803 murD UDP-N-acetylmura 45.1 23 0.00051 38.0 3.9 32 69-107 108-139 (448)
370 cd04119 RJL RJL (RabJ-Like) su 45.0 1E+02 0.0022 27.1 7.3 56 449-507 109-166 (168)
371 TIGR02034 CysN sulfate adenyly 44.5 41 0.00088 36.4 5.6 25 439-463 121-146 (406)
372 PF06745 KaiC: KaiC; InterPro 44.4 23 0.00051 34.2 3.4 42 67-113 17-60 (226)
373 TIGR03594 GTPase_EngA ribosome 44.4 97 0.0021 33.0 8.3 63 443-508 276-344 (429)
374 PRK00454 engB GTP-binding prot 44.3 1.6E+02 0.0034 27.2 8.7 59 446-507 131-193 (196)
375 PRK03369 murD UDP-N-acetylmura 44.3 26 0.00057 38.6 4.2 32 69-107 117-148 (488)
376 PRK04328 hypothetical protein; 44.2 32 0.00069 34.6 4.4 39 67-111 21-61 (249)
377 PRK13851 type IV secretion sys 44.2 19 0.0004 38.6 2.9 39 67-112 160-198 (344)
378 PF02562 PhoH: PhoH-like prote 44.1 24 0.00052 35.4 3.5 40 69-113 19-59 (205)
379 TIGR00157 ribosome small subun 44.1 92 0.002 31.4 7.7 62 438-503 55-118 (245)
380 COG1838 FumA Tartrate dehydrat 43.9 33 0.00071 34.4 4.3 153 279-469 12-177 (184)
381 cd01020 TroA_b Metal binding p 43.8 1.8E+02 0.0039 29.5 9.7 36 421-456 122-159 (264)
382 TIGR02881 spore_V_K stage V sp 43.6 15 0.00031 36.9 1.9 26 72-102 45-70 (261)
383 cd04171 SelB SelB subfamily. 43.6 97 0.0021 27.2 6.9 55 446-503 99-161 (164)
384 PRK05986 cob(I)alamin adenolsy 43.6 22 0.00048 35.4 3.2 35 67-107 21-55 (191)
385 cd01884 EF_Tu EF-Tu subfamily. 43.4 58 0.0013 31.7 5.9 43 438-480 105-153 (195)
386 PRK08939 primosomal protein Dn 43.4 34 0.00073 36.0 4.6 72 30-106 107-188 (306)
387 PRK05506 bifunctional sulfate 43.4 23 0.0005 40.4 3.7 38 67-110 458-495 (632)
388 COG0455 flhG Antiactivator of 43.3 27 0.00059 36.1 3.9 118 364-533 114-236 (262)
389 COG1159 Era GTPase [General fu 43.3 1.4E+02 0.0031 32.0 9.1 91 441-536 105-202 (298)
390 COG0467 RAD55 RecA-superfamily 43.1 29 0.00064 34.6 4.0 41 67-112 21-62 (260)
391 PRK07952 DNA replication prote 43.1 20 0.00044 36.5 2.9 32 71-107 101-132 (244)
392 TIGR03234 OH-pyruv-isom hydrox 43.0 1.5E+02 0.0032 29.2 8.8 87 435-524 82-182 (254)
393 cd01825 SGNH_hydrolase_peri1 S 43.0 2.6E+02 0.0057 25.5 11.2 75 388-481 52-139 (189)
394 PF03308 ArgK: ArgK protein; 42.9 20 0.00044 37.6 2.9 53 58-114 17-69 (266)
395 PF08303 tRNA_lig_kinase: tRNA 42.9 11 0.00024 37.0 1.0 26 223-248 88-113 (168)
396 KOG0744 AAA+-type ATPase [Post 42.7 19 0.00042 39.4 2.7 27 68-98 176-202 (423)
397 PF01297 TroA: Periplasmic sol 42.7 1.7E+02 0.0037 29.0 9.3 173 345-533 33-250 (256)
398 cd01860 Rab5_related Rab5-rela 42.6 96 0.0021 27.4 6.8 55 449-506 105-161 (163)
399 TIGR02109 PQQ_syn_pqqE coenzym 42.6 83 0.0018 32.9 7.3 49 436-485 131-179 (358)
400 PRK05286 dihydroorotate dehydr 42.4 2.1E+02 0.0047 30.4 10.4 106 435-546 123-248 (344)
401 PRK00091 miaA tRNA delta(2)-is 42.4 19 0.00041 38.0 2.6 26 69-98 4-29 (307)
402 cd01868 Rab11_like Rab11-like. 42.2 73 0.0016 28.4 6.0 55 449-506 107-163 (165)
403 PRK13111 trpA tryptophan synth 42.2 1.3E+02 0.0029 31.0 8.6 122 401-533 28-163 (258)
404 cd02021 GntK Gluconate kinase 42.2 13 0.00028 33.5 1.2 24 71-98 1-24 (150)
405 PRK10078 ribose 1,5-bisphospho 42.2 18 0.0004 34.2 2.3 23 69-95 2-24 (186)
406 TIGR00381 cdhD CO dehydrogenas 42.1 1.6E+02 0.0035 32.7 9.5 66 438-507 228-298 (389)
407 cd01886 EF-G Elongation factor 42.1 55 0.0012 33.6 5.8 24 440-463 106-129 (270)
408 cd03271 ABC_UvrA_II The excisi 41.9 40 0.00087 34.7 4.8 33 67-103 19-52 (261)
409 PRK13947 shikimate kinase; Pro 41.9 15 0.00032 33.7 1.5 23 72-98 4-26 (171)
410 PF13481 AAA_25: AAA domain; P 41.6 28 0.0006 32.4 3.4 27 67-97 30-56 (193)
411 cd01857 HSR1_MMR1 HSR1/MMR1. 41.4 78 0.0017 28.5 6.1 33 449-481 41-73 (141)
412 cd01892 Miro2 Miro2 subfamily. 41.4 58 0.0013 30.0 5.4 57 449-507 107-165 (169)
413 PF02492 cobW: CobW/HypB/UreG, 41.0 39 0.00085 32.0 4.3 35 71-111 2-36 (178)
414 cd04157 Arl6 Arl6 subfamily. 40.8 85 0.0018 27.6 6.2 57 448-504 102-160 (162)
415 TIGR00376 DNA helicase, putati 40.7 22 0.00047 41.1 2.9 34 70-108 174-207 (637)
416 PF13401 AAA_22: AAA domain; P 40.7 24 0.00053 30.4 2.7 27 68-98 3-29 (131)
417 cd01832 SGNH_hydrolase_like_1 40.6 1.5E+02 0.0033 27.1 7.9 51 427-481 85-147 (185)
418 PRK01060 endonuclease IV; Prov 40.5 2E+02 0.0043 28.7 9.4 97 423-521 75-181 (281)
419 PRK08118 topology modulation p 40.4 16 0.00034 34.6 1.5 23 72-98 4-26 (167)
420 COG0274 DeoC Deoxyribose-phosp 40.1 1.4E+02 0.003 31.0 8.2 44 456-499 130-173 (228)
421 PF12774 AAA_6: Hydrolytic ATP 40.1 15 0.00033 37.1 1.5 25 80-108 39-63 (231)
422 cd04170 EF-G_bact Elongation f 40.0 68 0.0015 32.2 6.0 42 440-481 106-147 (268)
423 PLN02881 tetrahydrofolylpolygl 39.9 1.7E+02 0.0036 33.6 9.6 85 364-485 159-243 (530)
424 PHA02530 pseT polynucleotide k 39.9 20 0.00043 36.1 2.3 24 70-97 3-26 (300)
425 PRK14489 putative bifunctional 39.9 33 0.00071 36.6 3.9 36 70-111 206-241 (366)
426 TIGR02880 cbbX_cfxQ probable R 39.8 18 0.00039 37.2 2.0 28 71-103 60-87 (284)
427 cd04120 Rab12 Rab12 subfamily. 39.8 1.4E+02 0.0029 29.2 7.9 56 449-507 104-162 (202)
428 PRK12736 elongation factor Tu; 39.8 1.4E+02 0.0029 32.3 8.6 69 439-507 116-200 (394)
429 smart00072 GuKc Guanylate kina 39.7 30 0.00064 32.8 3.3 48 68-119 1-48 (184)
430 cd01864 Rab19 Rab19 subfamily. 39.5 1.2E+02 0.0025 27.3 6.9 66 438-505 96-163 (165)
431 PF02606 LpxK: Tetraacyldisacc 39.5 42 0.00092 35.7 4.7 67 67-147 33-99 (326)
432 TIGR01360 aden_kin_iso1 adenyl 39.3 28 0.00061 32.0 3.0 25 69-97 3-27 (188)
433 TIGR01125 MiaB-like tRNA modif 39.3 67 0.0015 34.8 6.3 78 401-481 234-317 (430)
434 PRK01710 murD UDP-N-acetylmura 39.2 45 0.00097 36.3 4.9 31 69-106 117-147 (458)
435 COG0552 FtsY Signal recognitio 39.2 44 0.00096 36.3 4.8 35 69-108 139-173 (340)
436 TIGR01286 nifK nitrogenase mol 39.1 1.3E+02 0.0027 34.2 8.5 180 298-501 58-282 (515)
437 PRK04841 transcriptional regul 38.9 34 0.00073 39.5 4.1 51 58-116 21-71 (903)
438 cd04123 Rab21 Rab21 subfamily. 38.9 1.3E+02 0.0027 26.3 6.9 55 448-505 103-159 (162)
439 TIGR02782 TrbB_P P-type conjug 38.7 43 0.00093 35.0 4.5 40 68-112 131-171 (299)
440 TIGR03015 pepcterm_ATPase puta 38.6 25 0.00053 34.5 2.6 25 69-97 43-67 (269)
441 PLN03110 Rab GTPase; Provision 38.4 97 0.0021 30.0 6.7 56 449-507 116-173 (216)
442 PRK13900 type IV secretion sys 38.3 31 0.00067 36.7 3.5 37 68-111 159-195 (332)
443 PF02171 Piwi: Piwi domain; I 38.1 81 0.0018 32.0 6.3 120 351-479 50-182 (302)
444 cd02019 NK Nucleoside/nucleoti 38.1 20 0.00044 29.0 1.6 17 81-97 7-23 (69)
445 PRK12339 2-phosphoglycerate ki 38.1 25 0.00054 34.6 2.6 26 68-97 2-27 (197)
446 PF00931 NB-ARC: NB-ARC domain 38.1 33 0.00072 33.8 3.4 26 67-96 17-42 (287)
447 COG0703 AroK Shikimate kinase 37.9 18 0.00038 35.7 1.5 23 71-98 5-27 (172)
448 PRK04220 2-phosphoglycerate ki 37.9 29 0.00062 36.9 3.1 37 57-97 80-116 (301)
449 COG1224 TIP49 DNA helicase TIP 37.8 29 0.00062 38.5 3.1 28 67-98 63-90 (450)
450 PRK01390 murD UDP-N-acetylmura 37.6 37 0.0008 36.7 4.0 32 68-106 113-144 (460)
451 PRK09825 idnK D-gluconate kina 37.6 28 0.00062 33.2 2.8 25 69-97 3-27 (176)
452 cd01878 HflX HflX subfamily. 37.5 1.3E+02 0.0029 28.2 7.3 59 441-505 144-202 (204)
453 TIGR02173 cyt_kin_arch cytidyl 37.5 17 0.00037 32.9 1.3 23 71-97 2-24 (171)
454 PLN02591 tryptophan synthase 37.4 2.3E+02 0.0049 29.3 9.4 122 401-533 18-152 (250)
455 TIGR02729 Obg_CgtA Obg family 37.4 1.6E+02 0.0035 31.2 8.6 56 449-507 272-328 (329)
456 cd04144 Ras2 Ras2 subfamily. 37.1 1.8E+02 0.004 27.2 8.1 57 449-508 105-163 (190)
457 PRK09302 circadian clock prote 36.9 47 0.001 36.7 4.7 42 66-112 28-71 (509)
458 PRK04690 murD UDP-N-acetylmura 36.8 35 0.00076 37.4 3.7 31 69-106 115-145 (468)
459 PF01695 IstB_IS21: IstB-like 36.8 26 0.00056 33.7 2.4 33 69-106 47-79 (178)
460 PRK06995 flhF flagellar biosyn 36.8 30 0.00064 39.0 3.2 32 68-103 255-286 (484)
461 cd04118 Rab24 Rab24 subfamily. 36.7 1.4E+02 0.0031 27.6 7.2 67 438-507 91-165 (193)
462 cd07995 TPK Thiamine pyrophosp 36.7 1.6E+02 0.0034 28.9 7.8 24 364-397 23-46 (208)
463 PRK02472 murD UDP-N-acetylmura 36.7 40 0.00087 36.0 4.0 31 69-106 108-138 (447)
464 COG1082 IolE Sugar phosphate i 36.6 2.4E+02 0.0052 27.6 9.1 69 426-495 73-156 (274)
465 PRK08762 molybdopterin biosynt 36.5 97 0.0021 33.1 6.8 25 461-486 232-256 (376)
466 PRK02705 murD UDP-N-acetylmura 36.4 41 0.00089 36.1 4.1 33 68-107 108-140 (459)
467 TIGR02026 BchE magnesium-proto 36.4 89 0.0019 34.8 6.7 78 402-483 290-370 (497)
468 cd01918 HprK_C HprK/P, the bif 36.3 29 0.00063 33.2 2.6 24 69-96 14-37 (149)
469 cd01121 Sms Sms (bacterial rad 36.3 51 0.0011 35.7 4.8 45 58-107 69-115 (372)
470 PRK00048 dihydrodipicolinate r 36.3 1.2E+02 0.0027 30.7 7.2 63 439-507 73-135 (257)
471 COG3839 MalK ABC-type sugar tr 36.2 24 0.00052 38.0 2.3 21 67-91 27-47 (338)
472 PRK11545 gntK gluconate kinase 36.2 20 0.00042 33.7 1.4 18 81-98 3-20 (163)
473 PRK12377 putative replication 36.1 30 0.00066 35.3 2.9 31 70-105 102-132 (248)
474 cd04125 RabA_like RabA-like su 36.1 1.7E+02 0.0037 27.1 7.6 67 437-506 89-164 (188)
475 cd00880 Era_like Era (E. coli 35.7 1.1E+02 0.0023 25.8 5.7 61 442-505 96-161 (163)
476 PRK13361 molybdenum cofactor b 35.7 1.1E+02 0.0024 32.0 7.0 54 438-492 141-195 (329)
477 PF00682 HMGL-like: HMGL-like 35.7 1.3E+02 0.0028 29.5 7.1 109 432-543 103-213 (237)
478 cd01895 EngA2 EngA2 subfamily. 35.7 1.5E+02 0.0033 25.9 6.9 59 444-505 107-172 (174)
479 TIGR02640 gas_vesic_GvpN gas v 35.7 29 0.00064 35.0 2.7 26 68-97 20-45 (262)
480 PRK14334 (dimethylallyl)adenos 35.5 92 0.002 34.1 6.6 80 401-483 236-321 (440)
481 PRK05301 pyrroloquinoline quin 35.5 1.2E+02 0.0027 32.0 7.3 50 436-486 140-189 (378)
482 PRK12337 2-phosphoglycerate ki 35.4 29 0.00063 39.1 2.8 27 68-98 254-280 (475)
483 PLN02199 shikimate kinase 35.1 30 0.00066 36.9 2.8 28 67-98 100-127 (303)
484 PRK05973 replicative DNA helic 35.0 47 0.001 33.9 4.0 41 67-112 62-103 (237)
485 cd01393 recA_like RecA is a b 35.0 47 0.001 31.8 3.9 27 67-97 17-43 (226)
486 PF10662 PduV-EutP: Ethanolami 34.8 92 0.002 29.8 5.7 55 447-503 86-141 (143)
487 PRK05537 bifunctional sulfate 34.7 39 0.00085 38.6 3.7 28 67-98 390-417 (568)
488 PRK03806 murD UDP-N-acetylmura 34.7 45 0.00098 35.7 4.0 31 69-106 105-135 (438)
489 COG1428 Deoxynucleoside kinase 34.6 23 0.00051 36.1 1.8 31 69-107 4-34 (216)
490 cd07944 DRE_TIM_HOA_like 4-hyd 34.5 1.3E+02 0.0029 30.9 7.2 54 436-489 108-161 (266)
491 cd04176 Rap2 Rap2 subgroup. T 34.5 1.6E+02 0.0035 26.1 7.0 65 438-505 93-160 (163)
492 PRK11889 flhF flagellar biosyn 34.4 32 0.00069 38.5 2.9 36 69-109 241-276 (436)
493 TIGR01278 DPOR_BchB light-inde 34.4 3.1E+02 0.0067 30.9 10.5 140 327-481 22-190 (511)
494 cd01019 ZnuA Zinc binding prot 34.3 2.6E+02 0.0056 28.8 9.3 68 422-490 149-238 (286)
495 PRK00141 murD UDP-N-acetylmura 34.3 40 0.00087 37.0 3.7 31 69-106 121-151 (473)
496 cd04133 Rop_like Rop subfamily 34.2 1.8E+02 0.004 27.5 7.7 72 436-509 88-174 (176)
497 cd01874 Cdc42 Cdc42 subfamily. 34.0 1.9E+02 0.0042 26.9 7.6 55 450-506 105-173 (175)
498 PF00580 UvrD-helicase: UvrD/R 34.0 23 0.00051 34.7 1.6 34 454-488 259-292 (315)
499 cd04160 Arfrp1 Arfrp1 subfamil 33.7 1.3E+02 0.0027 26.9 6.1 14 449-462 106-119 (167)
500 COG3265 GntK Gluconate kinase 33.7 22 0.00047 34.9 1.3 18 81-98 3-20 (161)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=5.4e-251 Score=1984.91 Aligned_cols=555 Identities=85% Similarity=1.292 Sum_probs=543.2
Q ss_pred CCCCcccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCC
Q 008480 2 ASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTP 81 (564)
Q Consensus 2 ~~~~~~~~~~~~~~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP 81 (564)
.-|+...++.++.||+|||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||
T Consensus 2 ~~~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP 81 (637)
T PLN02759 2 TMSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTP 81 (637)
T ss_pred CCcCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCC
Confidence 33444556777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHH
Q 008480 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAID 161 (564)
Q Consensus 82 ~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~id 161 (564)
+|||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||
T Consensus 82 ~GEGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~id 161 (637)
T PLN02759 82 LGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAID 161 (637)
T ss_pred CCCCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999997569999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccc
Q 008480 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRF 241 (564)
Q Consensus 162 n~i~~~n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~ 241 (564)
|||||||+|+|++||+||||..++|+|+|++.|||||+||||+|+||++||||||++|++|+|||++|+|+||||||||+
T Consensus 162 n~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~ 241 (637)
T PLN02759 162 TRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRF 241 (637)
T ss_pred HHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCCCCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccC
Q 008480 242 LRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAIN 321 (564)
Q Consensus 242 LR~I~iGlg~~~~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAik 321 (564)
||+|+||+|+++||++||+|||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||
T Consensus 242 LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAik 321 (637)
T PLN02759 242 LRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIH 321 (637)
T ss_pred hhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEee
Q 008480 322 PTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 401 (564)
Q Consensus 322 PNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaT 401 (564)
||||||+||||||||||||||||||||||||||+||||+|.+||||||||||||||||||||||||.+|++|||||||||
T Consensus 322 PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaT 401 (637)
T PLN02759 322 PTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVAT 401 (637)
T ss_pred ccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 402 vRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
|||||||||++..++|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+++|+.
T Consensus 402 vRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~ 481 (637)
T PLN02759 402 VRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAF 481 (637)
T ss_pred hHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred eEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhccccc
Q 008480 482 DAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSIL 556 (564)
Q Consensus 482 ~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l 556 (564)
++++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+
T Consensus 482 ~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAkeIYGAd~VefS~~AkkqLk~ie~l 557 (637)
T PLN02759 482 DAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQ 557 (637)
T ss_pred cEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHc
Confidence 4999999999999999999999999986467899999999999999999999 99999999999999999999988
No 2
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=1.1e-245 Score=1941.00 Aligned_cols=541 Identities=64% Similarity=0.987 Sum_probs=527.6
Q ss_pred ccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCc
Q 008480 7 VRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGK 86 (564)
Q Consensus 7 ~~~~~~~~~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGK 86 (564)
..++.++.||+|||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+||||
T Consensus 6 ~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKv~l~~~~~~~~~~~gklIlVTaitPTP~GEGK 85 (625)
T PTZ00386 6 TRKLSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNGKYVVVAGMNPTPLGEGK 85 (625)
T ss_pred CCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHhcCCcceecCHHHHHhhccCCCCcEEEEeecCCCCCCCCc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhc
Q 008480 87 STTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH 166 (564)
Q Consensus 87 tTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~ 166 (564)
|||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||
T Consensus 86 tTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLlaA~iDn~i~~ 165 (625)
T PTZ00386 86 STTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIFH 165 (625)
T ss_pred cchhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999659999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccccee
Q 008480 167 EASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKIT 246 (564)
Q Consensus 167 ~n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 246 (564)
||+|+|++||+||| +|+|+|+++|++||+||||.|+||++||+|||++|++|+|||++|+|+||||||||+||+|+
T Consensus 166 ~n~~~d~~l~~~l~----~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 241 (625)
T PTZ00386 166 ERTQSDAALYRRLT----DELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREIT 241 (625)
T ss_pred ccccchhHHHhhhc----cccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhcee
Confidence 99999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccc
Q 008480 247 IGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQ 326 (564)
Q Consensus 247 iGlg~~~~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQ 326 (564)
||+|++++|++||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+||||||||||||
T Consensus 242 vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQ 321 (625)
T PTZ00386 242 IGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTIEPTLMQ 321 (625)
T ss_pred eCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHH
Q 008480 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK 406 (564)
Q Consensus 327 TlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK 406 (564)
|+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||.+|++||||||||||||||
T Consensus 322 TlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK 401 (625)
T PTZ00386 322 TLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALK 401 (625)
T ss_pred ecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHH-HcCCCeEEE
Q 008480 407 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-AAGAFDAVV 485 (564)
Q Consensus 407 ~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~-~~G~~~~~v 485 (564)
||||+++. ++.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+ ++|+.++++
T Consensus 402 ~hGG~~~~--------~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~ 473 (625)
T PTZ00386 402 FHGGVEPV--------VAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVV 473 (625)
T ss_pred HhCCCCcc--------ccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEE
Confidence 99999874 455799999999999999999999999999999999999999999999999999 999534999
Q ss_pred cCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 486 CSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 486 s~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+ |+.
T Consensus 474 s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~fk~LYd~~~sI~eKIetIAkeIYGA~gVefS~~AkkqLk~ie~~-G~~ 548 (625)
T PTZ00386 474 TDHWAKGGAGAVDLAQALIRVTENVPSNFKLLYPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERM-GYG 548 (625)
T ss_pred echhhccchhHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHccCCCcEEECHHHHHHHHHHHHc-CCC
Confidence 999999999999999999999986567899999999999999999999 99999999999999999999998 443
No 3
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=5.9e-234 Score=1843.86 Aligned_cols=505 Identities=52% Similarity=0.810 Sum_probs=494.0
Q ss_pred ccCCCCCChHHHHccCC--CCCHHHHHHHcCCCCcccccccCceeeecch-hhhhccCCCCCcEEEEeecCCCCCCCCcc
Q 008480 11 QVVSPVPADIDIANSVE--PLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDELEGSADGYYVVVGGITPTPLGEGKS 87 (564)
Q Consensus 11 ~~~~~m~sDieIa~~~~--~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~-~l~~~~~~~~gklIlVTaitPTP~GEGKt 87 (564)
++++|+||||||||+++ ++||++||+++||++|||||||+|||||+++ ++++++++|+|||||||||||||+|||||
T Consensus 2 ~~~~~~~sdieIa~~~~~~~~~I~~ia~~lgl~~~~le~YG~~kAKi~l~~~l~~~~~~~~gklIlVTaitPTP~GEGKt 81 (587)
T PRK13507 2 ALDPTKMKDWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVTAITPTPLGEGKS 81 (587)
T ss_pred CCCCCCCCHHHHHHhhhccCCCHHHHHHHcCCCHHHHHhcCCcceeecHHHHHHhhccCCCCeEEEEeccCCCCCCCCcc
Confidence 35679999999999999 8999999999999999999999999999998 89999989999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhcc
Q 008480 88 TTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHE 167 (564)
Q Consensus 88 TttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~ 167 (564)
||||||+|||+ ++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||||||
T Consensus 82 TttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLlaA~idn~i~~~ 160 (587)
T PRK13507 82 TTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLAMVALTARMQHE 160 (587)
T ss_pred chhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceee
Q 008480 168 ASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITI 247 (564)
Q Consensus 168 n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~i 247 (564)
|+|+|++|+.| .|++|+|||++|+|+||||||||+||+|+|
T Consensus 161 n~~~~~~l~~~---------------------------------------~~~~L~IDp~~I~w~RvlD~NDR~LR~I~v 201 (587)
T PRK13507 161 RNYTDEQLARR---------------------------------------GLKRLDIDPTRVEMGWIIDFCAQALRNIII 201 (587)
T ss_pred Cccccchhhcc---------------------------------------cccccCCCcceeeEeecccccchhhhceee
Confidence 99999998743 367999999999999999999999999999
Q ss_pred ccCCCCCCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccce
Q 008480 248 GQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQT 327 (564)
Q Consensus 248 Glg~~~~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQT 327 (564)
|+|++.+|+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||
T Consensus 202 GlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQT 281 (587)
T PRK13507 202 GIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQT 281 (587)
T ss_pred CcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHh
Q 008480 328 LEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKM 407 (564)
Q Consensus 328 lEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~ 407 (564)
+||||||||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++|||||||||||||||
T Consensus 282 lEgtPa~vHgGPFANIAHG~nSviAt~~ALkla---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~ 358 (587)
T PRK13507 282 IEGQPVFVHAGPFANIAIGQSSIIADRVGLKLA---DYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKM 358 (587)
T ss_pred cCCCceEEecCCcchhhcccHHHHHHHHHHhcC---CeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcC
Q 008480 408 HGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (564)
Q Consensus 408 HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~ 487 (564)
|||++...+|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|++.|++ +++|+
T Consensus 359 hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~ 437 (587)
T PRK13507 359 HGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSR 437 (587)
T ss_pred cCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred ccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 488 HHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 488 ~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
||++||+|++|||++|+++|++ +++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+.|+.
T Consensus 438 ~wa~GGeGa~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~gGfg 510 (587)
T PRK13507 438 HWEKGGEGALELADAVIDACNE-PNDFKFLYPLEMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESDPETA 510 (587)
T ss_pred hhhccchhHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999985 57899999999999999999999 999999999999999999999996554
No 4
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=8e-230 Score=1815.02 Aligned_cols=476 Identities=57% Similarity=0.903 Sum_probs=398.9
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 16 m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
|+|||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+|||||||||||+|
T Consensus 1 m~sd~~ia~~~~~~~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~ 80 (557)
T PF01268_consen 1 MKSDIEIAQSAKLKPIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQ 80 (557)
T ss_dssp --GGSTTTCTT----HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCCCHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 008480 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (564)
Q Consensus 96 aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~ 175 (564)
|| +|+|+++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 al-~~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn------- 152 (557)
T PF01268_consen 81 AL-NRLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLLAAMIDNHIYHGN------- 152 (557)
T ss_dssp HH-HHTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HH-HhcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 99 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCC
Q 008480 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (564)
Q Consensus 176 ~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G 255 (564)
+|+|||++|+|+||||||||+||+|+||+|++.||
T Consensus 153 ---------------------------------------------~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G 187 (557)
T PF01268_consen 153 ---------------------------------------------ELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANG 187 (557)
T ss_dssp ---------------------------------------------TT-EECCCE---EEESS--GGGSSEEESTSSCCC-
T ss_pred ---------------------------------------------cCCCCcceeeeeeeccccchhhhheeeCCCCCCCC
Confidence 79999999999999999999999999999999999
Q ss_pred cceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEE
Q 008480 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (564)
Q Consensus 256 ~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~v 335 (564)
+|||+|||||||||||||||||+|++|||+||||||||||+||+|||++||+++||||+|||||||||||||+||||+||
T Consensus 188 ~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~v 267 (557)
T PF01268_consen 188 VPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAYTKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFV 267 (557)
T ss_dssp --EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEEETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE
T ss_pred CcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEEcCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCcc
Q 008480 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (564)
Q Consensus 336 HgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~ 415 (564)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||++.
T Consensus 268 HgGPFANIAhG~nSviAt~~al~l~---dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~-- 342 (557)
T PF01268_consen 268 HGGPFANIAHGCNSVIATKMALKLA---DYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK-- 342 (557)
T ss_dssp -----SSSS--B--HHHHHHHHHHS---SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--
T ss_pred eccccccccccCchHHHHHHHHhhc---ceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999975
Q ss_pred CCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 008480 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (564)
Q Consensus 416 ~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeG 495 (564)
++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|
T Consensus 343 ------~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeG 415 (557)
T PF01268_consen 343 ------DDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCEELGVR-AAVSEHWAKGGEG 415 (557)
T ss_dssp ------GGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGG
T ss_pred ------cccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCC-EEEechhhccccc
Confidence 678999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred hHHHHHHHHHHh-hcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhccccc
Q 008480 496 AVDLGIAVQRAC-ENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSIL 556 (564)
Q Consensus 496 a~eLA~~Vvea~-e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l 556 (564)
++|||++|+++| ++++++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+
T Consensus 416 a~eLA~~Vv~a~ee~~~~~fk~LY~l~~sI~eKIe~IA~eIYGA~~V~~S~~A~kqLk~~e~~ 478 (557)
T PF01268_consen 416 AVELAEAVVEACEEEEPSNFKPLYDLEDSIEEKIETIATEIYGADGVEYSPKAKKQLKKIEKL 478 (557)
T ss_dssp CHHHHHHHHHH-HHHS------SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccCCCCcCcccCCcccHHHHHHHHHhhhcCCCcceeCHHHHHHHHHHHhc
Confidence 999999999999 45578899999999999999999999 99999999999999999999986
No 5
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-225 Score=1738.79 Aligned_cols=474 Identities=54% Similarity=0.865 Sum_probs=468.2
Q ss_pred ChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 18 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 18 sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|||||||+++++||++||+++||..||||+||+|||||+++++++++++++|||||||||||||+|||||||||||+|||
T Consensus 1 sDieIa~~~~~k~I~~ia~k~Gl~~d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al 80 (554)
T COG2759 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDAL 80 (554)
T ss_pred ChhhhhhhcccccHHHHHHHcCCCHHHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhh
Q 008480 98 GAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN 177 (564)
Q Consensus 98 ~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~ 177 (564)
+ ++||++++|||||||||||||||||||||||||+|||||||||||||||||+|||||+|+|||||||||
T Consensus 81 ~-~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNllsA~Idnhi~~gn--------- 150 (554)
T COG2759 81 N-KLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLLSAAIDNHIYHGN--------- 150 (554)
T ss_pred H-hcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHHHHHHHhhhhcCc---------
Confidence 5 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcc
Q 008480 178 RLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV 257 (564)
Q Consensus 178 rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~ 257 (564)
+|+|||+||+|+||||||||+||+|++|+|++.+|+|
T Consensus 151 -------------------------------------------~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~ 187 (554)
T COG2759 151 -------------------------------------------ELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVP 187 (554)
T ss_pred -------------------------------------------ccCcCcceEEEEeeeccchhhhhheeeccCCccCCcc
Confidence 7999999999999999999999999999999999999
Q ss_pred eecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEec
Q 008480 258 RETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA 337 (564)
Q Consensus 258 r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHg 337 (564)
|+||||||||||+|||||||+|++|||+|||||||||++||+|||++||+++|||++|||||||||||||+||||+||||
T Consensus 188 RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHg 267 (554)
T COG2759 188 REDGFDITVASEIMAILCLATDLKDLKERLGRIVIAYDYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHG 267 (554)
T ss_pred cCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEEecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCC
Q 008480 338 GPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAG 417 (564)
Q Consensus 338 GPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g 417 (564)
||||||||||||||||++||||+ ||||||||||||||||||||||||.+|++||||||||||||||||||+++
T Consensus 268 GPFANIAhGcnSiiAt~~AlkL~---dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~---- 340 (554)
T COG2759 268 GPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK---- 340 (554)
T ss_pred CccchhhccchhHHHHHHHHhhc---CeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh----
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999984
Q ss_pred CCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchH
Q 008480 418 KPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (564)
Q Consensus 418 ~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~ 497 (564)
++|.+||+|+|++||+||.|||+|+|+||||||||||+|++||++||+.|+++|.++|++ +++|+||++||+|++
T Consensus 341 ----~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~-~~ls~vwakGg~Gg~ 415 (554)
T COG2759 341 ----EDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVE-VALSEVWAKGGEGGI 415 (554)
T ss_pred ----HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCc-eeehhhhhccCccHH
Confidence 899999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhccccc
Q 008480 498 DLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSIL 556 (564)
Q Consensus 498 eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l 556 (564)
|||++|+++|++++++|++|||.++||++||++||+ ||||++|+||++|++||+.||..
T Consensus 416 eLA~kVv~~~~~~~~~f~~lYd~~~~i~~Ki~~I~~~iYga~~v~~s~~A~~ql~~~~~~ 475 (554)
T COG2759 416 ELAKKVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKEIYGADGVEFSPKAKEQLKTFEKQ 475 (554)
T ss_pred HHHHHHHHHHhCCcccceeecccCCcHHHHHHHHHHHhcCCcceeeCHHHHHHHHHHHHh
Confidence 999999999998778999999999999999999999 99999999999999999999754
No 6
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.1e-225 Score=1764.92 Aligned_cols=547 Identities=64% Similarity=1.015 Sum_probs=539.7
Q ss_pred cccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCC
Q 008480 6 TVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEG 85 (564)
Q Consensus 6 ~~~~~~~~~~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEG 85 (564)
++.||.++.|+||||+|+|++++++|.++|+|+||.++|||.||+|||||++++++||+.|++||||+||+|||||+|||
T Consensus 302 ~~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~geg 381 (935)
T KOG4230|consen 302 DLLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEG 381 (935)
T ss_pred CCCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhh
Q 008480 86 KSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIF 165 (564)
Q Consensus 86 KtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~ 165 (564)
|||||+||+|||+ +|||.+++|+||||+|||||+|||||||||||||||||||||+||||||||||||||+|+||+|||
T Consensus 382 kst~t~glvqal~-~l~k~~iacvrqpsqgptfgvkggaagggysq~ipmdefnlhltgdihaitaannllaaaidtrmf 460 (935)
T KOG4230|consen 382 KSTTTAGLVQALG-ALGKLAIACVRQPSQGPTFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRMF 460 (935)
T ss_pred cchhHHHHHHHHH-hhCCcceeeecCCCcCCccccccccCCCccceeeehhhcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999997 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccce
Q 008480 166 HEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (564)
Q Consensus 166 ~~n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I 245 (564)
|||+|+|++||+|||| .++|+|+|+|.|+||||||||+|+||++|||||+++|.||||||++|+|+||+|+|||+||+|
T Consensus 461 he~tq~daal~krlvp-~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~i 539 (935)
T KOG4230|consen 461 HENTQSDAALYKRLVP-VKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQI 539 (935)
T ss_pred hhcccchHHHHHhhcc-ccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhhe
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCcc
Q 008480 246 TIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLM 325 (564)
Q Consensus 246 ~iGlg~~~~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLv 325 (564)
+||+.++++|++|.+|||||||||+||||+||+||+|||+||||||||.+++|+|||++||||+||+|+|||||||||||
T Consensus 540 tig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllkdaikpnlm 619 (935)
T KOG4230|consen 540 TIGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLKDAIKPNLM 619 (935)
T ss_pred ecccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHHhhcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCC------eEEeecccccccccccccccccccCCCCcceEEEE
Q 008480 326 QTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG------FVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIV 399 (564)
Q Consensus 326 QTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~d------yvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlV 399 (564)
|||||||+|||+||||||+||.||||||++||||+|++. ||||||||++|+|+|||||||||+|||.||+||||
T Consensus 620 qtlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlv 699 (935)
T KOG4230|consen 620 QTLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLV 699 (935)
T ss_pred hhccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEe
Confidence 999999999999999999999999999999999999874 99999999999999999999999999999999999
Q ss_pred eehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcC
Q 008480 400 ATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG 479 (564)
Q Consensus 400 aTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G 479 (564)
|||||||+|||.|.+++|+|||++|.+||+|.+++||+||.|||+|+++||+|||||||+|.|||+.||++|++.+.++|
T Consensus 700 atvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~fgipvvvain~f~tds~~ei~~ir~~al~ag 779 (935)
T KOG4230|consen 700 ATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKKFGIPVVVAINKFKTDSEKEIEAIREAALEAG 779 (935)
T ss_pred ehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccc
Q 008480 480 AFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSI 555 (564)
Q Consensus 480 ~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~ 555 (564)
+.+++.|+||++||+||++||++|+++|+. +++|++|||.+.||++||+.||+ +|||++|++||+|+++++.|..
T Consensus 780 a~dav~snhwaeggkgai~la~av~~a~~~-~s~f~llydv~~~iedk~~~iaqkmyga~~ie~~p~aq~ki~~y~k 855 (935)
T KOG4230|consen 780 AFDAVTSNHWAEGGKGAIELAKAVITACDS-PSKFRLLYDVNSSIEDKLTIIAQKMYGAAGIELSPEAQEKIDTYKK 855 (935)
T ss_pred CcccccccchhhcCccHHHHHHHHHHHhcC-CcceeEEEecCccHHHHHHHHHHHHcCCccceeCHHHHHHHHHHHh
Confidence 999999999999999999999999999985 68899999999999999999999 9999999999999999999864
No 7
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.5e-223 Score=1766.20 Aligned_cols=500 Identities=53% Similarity=0.832 Sum_probs=488.2
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 16 m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
|+|||||||+++++||++||+++||++|||||||+|||||++++++|++++|+||||+||+++|||+|||||||||||+|
T Consensus 1 m~sdieia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~ 80 (578)
T PRK13506 1 MLSDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAITPTPLGEGKTVTTIGLTQ 80 (578)
T ss_pred CCchHHHHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceecCHHHHHhhccCCCCeEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 008480 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (564)
Q Consensus 96 aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~ 175 (564)
+| +++|++++.|||||||||+||+||||+|||||||+|||||||||||||||||||||||+|+|||||||||+++|++|
T Consensus 81 ~l-a~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~ 159 (578)
T PRK13506 81 GL-NALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF 159 (578)
T ss_pred HH-HHhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999999998766552
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCC
Q 008480 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (564)
Q Consensus 176 ~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G 255 (564)
+|+++|++|+|||++|+|+||||||||+||+|+||+|++.||
T Consensus 160 --------------------------------------~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G 201 (578)
T PRK13506 160 --------------------------------------EAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNG 201 (578)
T ss_pred --------------------------------------hhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCC
Confidence 389999999999999999999999999999999999999999
Q ss_pred cceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEE
Q 008480 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (564)
Q Consensus 256 ~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~v 335 (564)
+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||
T Consensus 202 ~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~v 281 (578)
T PRK13506 202 PEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAYNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLI 281 (578)
T ss_pred CcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEEcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCcc
Q 008480 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (564)
Q Consensus 336 HgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~ 415 (564)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++||||||||||||||||||++...
T Consensus 282 HgGPFANIAhG~nSviAt~~aLkla---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~ 358 (578)
T PRK13506 282 HAGPFANIAHGNSSIIADRIALKLA---DYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLR 358 (578)
T ss_pred ecCCcccccccchHHHHHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999988899
Q ss_pred CCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHH-cCCCeEEEcCccccCcc
Q 008480 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 416 ~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~-~G~~~~~vs~~wakGGe 494 (564)
.|+|||++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|++ .|+. +++|+||++||+
T Consensus 359 ~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~-~~~~~~wa~GGe 437 (578)
T PRK13506 359 PGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFG-CEISEAFAQGGE 437 (578)
T ss_pred cCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCc-EEEechhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 5665 999999999999
Q ss_pred chHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 495 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
|++|||++|+++|++ +++|+|||++++||+|||++||+ ||||++|+||++|++||++||.+ |+.
T Consensus 438 Ga~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~eKIetIAkeIYGA~gVefS~~A~kqLk~ie~~-Gf~ 502 (578)
T PRK13506 438 GATALAQAVVRACEQ-PSQFKLLYPDEMSLEAKLMTLAEVGYGAAGVSLSDKAKQQLAQLTAL-GYD 502 (578)
T ss_pred hHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHc-CCC
Confidence 999999999999986 57899999999999999999999 99999999999999999999998 544
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=9.9e-214 Score=1692.86 Aligned_cols=479 Identities=52% Similarity=0.824 Sum_probs=471.1
Q ss_pred CCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 15 PVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 15 ~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
+|+|||||||+++++||++||+++||++|+||+||+|||||+++.+++++++|++|+|+||+++|||+||||||||+||+
T Consensus 1 ~~~sd~eia~~~~~~~i~~ia~~~gl~~~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA 80 (557)
T PRK13505 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLG 80 (557)
T ss_pred CCCChHHHHhhCCCcCHHHHHHHcCCCHHHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhH
Q 008480 95 QALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKA 174 (564)
Q Consensus 95 qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~ 174 (564)
|+|+ ++|++++++||||||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~~la-~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLlaA~idn~i~~gn------ 153 (557)
T PRK13505 81 DALN-KIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLLAALIDNHIHQGN------ 153 (557)
T ss_pred HHHH-HcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHHHHHHHHHHhccC------
Confidence 9995 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCC
Q 008480 175 LFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 254 (564)
Q Consensus 175 ~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~ 254 (564)
+|+|||++|+|+||||||||+||+|+||+|++.|
T Consensus 154 ----------------------------------------------~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~ 187 (557)
T PRK13505 154 ----------------------------------------------ELGIDPRRITWKRVLDMNDRALRNIVVGLGGPAN 187 (557)
T ss_pred ----------------------------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCC
Confidence 7999999999999999999999999999999999
Q ss_pred CcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeE
Q 008480 255 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVL 334 (564)
Q Consensus 255 G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~ 334 (564)
|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+||||||
T Consensus 188 G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~ 267 (557)
T PRK13505 188 GVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGYTYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAF 267 (557)
T ss_pred CCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCc
Q 008480 335 VHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQV 414 (564)
Q Consensus 335 vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~ 414 (564)
||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++||||||||||||||||||+++
T Consensus 268 vHgGPFANIAhG~nSviAt~~al~la---dyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~- 343 (557)
T PRK13505 268 VHGGPFANIAHGCNSVLATKTALKLA---DYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK- 343 (557)
T ss_pred EecCCcchhhcccHHHHHHHHHHhhC---CEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh-
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 008480 415 VAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 415 ~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGe 494 (564)
++|.+||+|++++||.||+|||+|+++||+|+|||||+|++||++|+++|+++|++.|++ +++|+||++||+
T Consensus 344 -------~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~ 415 (557)
T PRK13505 344 -------DDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAKGGE 415 (557)
T ss_pred -------hhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEecccccCCc
Confidence 688999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred chHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccC
Q 008480 495 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGL 559 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~ 559 (564)
|+++||++|++++++++++|+|+|++++|+++||++||+ ||||++|+||++|++||+.||.+ |+
T Consensus 416 Gai~LA~aVveA~~~~~s~f~~lY~~d~sl~eKIe~IAkkIYGA~~V~~s~~A~kqL~~~e~~-Gf 480 (557)
T PRK13505 416 GGVELAEKVVELIEEGESNFKPLYDDEDSLEEKIEKIATKIYGAKGVEFSPKAKKQLKQIEKN-GW 480 (557)
T ss_pred chHHHHHHHHHHHhcCCCCCceecCCCCcHHHHHHHHHHHccCCCCeeECHHHHHHHHHHHHc-CC
Confidence 999999999999986567899999999999999999999 99999999999999999999997 44
No 9
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=3.7e-214 Score=1681.79 Aligned_cols=459 Identities=63% Similarity=0.976 Sum_probs=451.2
Q ss_pred HHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 32 SEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 32 ~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
++||+++||++|||||||+|||||++++++|++++|+||||+||+++|||+||||||||+||+|+|+ ++|++++++|||
T Consensus 1 ~~ia~~lgl~~~~~~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la-~~Gkk~l~~LR~ 79 (524)
T cd00477 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALN-AHGKKAIACLRE 79 (524)
T ss_pred ChhHHHcCCCHHHHHhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH-HhCCcEEEEEec
Confidence 3799999999999999999999999999999998999999999999999999999999999999995 999999999999
Q ss_pred CCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCCcchh
Q 008480 112 PSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFS 191 (564)
Q Consensus 112 PSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~rl~~~~~~~~r~~~ 191 (564)
|||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 80 PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn----------------------- 136 (524)
T cd00477 80 PSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLLAAAIDNHIHHGN----------------------- 136 (524)
T ss_pred CCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHHHHHHHHHHhccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeehhhHH
Q 008480 192 NIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIM 271 (564)
Q Consensus 192 ~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdItvASEiM 271 (564)
+|+|||++|+|+||||||||+||+|+||+|++.||+|||||||||||||||
T Consensus 137 -----------------------------~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiM 187 (524)
T cd00477 137 -----------------------------RLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIM 187 (524)
T ss_pred -----------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHH
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHH
Q 008480 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIV 351 (564)
Q Consensus 272 AIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSii 351 (564)
||||||+|++|||+||||||||||+||+|||++||+++||||+|||||||||||||+|||||||||||||||||||||||
T Consensus 188 AIlcLa~~l~DLk~Rl~~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSvi 267 (524)
T cd00477 188 AILCLATDLEDLKERLGRIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSII 267 (524)
T ss_pred HHHHHcCCHHHHHHHHhCEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccc-cccHH
Q 008480 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL-NENVA 430 (564)
Q Consensus 352 Atk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~-~eNl~ 430 (564)
|||+||||+ ||||||||||||||||||||||||.+|++||||||||||||||||||+++. ++. +||++
T Consensus 268 Atk~al~la---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~--------~l~~~en~~ 336 (524)
T cd00477 268 ADKIALKLA---DYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKV--------TLGLEENLE 336 (524)
T ss_pred HHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcc--------cCCCccCHH
Confidence 999999999 999999999999999999999999999999999999999999999999874 455 89999
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcC
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~ 510 (564)
+|++||+||+|||+|+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|++|||++|+++|++
T Consensus 337 al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~-~~~~~~~~~GG~Ga~eLA~~Vi~a~e~- 414 (524)
T cd00477 337 ALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAF-VAVSEHWAEGGKGAVELAEAVIEACEQ- 414 (524)
T ss_pred HHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEehhhhhhhhhHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999999999999999999999999997 999999999999999999999999986
Q ss_pred CCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhccccc
Q 008480 511 TQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSIL 556 (564)
Q Consensus 511 ~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l 556 (564)
+++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+
T Consensus 415 ~s~fk~LY~~~~si~eKIetIAk~IYGA~~V~~S~~A~kqLk~ie~~ 461 (524)
T cd00477 415 PSEFKFLYDLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYEKQ 461 (524)
T ss_pred CCCCccccCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHHc
Confidence 57899999999999999999999 99999999999999999999997
No 10
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=96.80 E-value=0.0012 Score=65.53 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=42.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE---EecCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~---~lRePSlGP~FGiK 121 (564)
+.+|.|.||+-. -||||||++..|+.+| ++.|+++.+ .+|.|++.-.||..
T Consensus 101 ~~~~vi~vts~~---~g~Gktt~a~nLA~~l-a~~g~~VllID~D~~~~~~~~~~~~~ 154 (274)
T TIGR03029 101 EGRKALAVVSAK---SGEGCSYIAANLAIVF-SQLGEKTLLIDANLRDPVQHRNFKLS 154 (274)
T ss_pred CCCeEEEEECCC---CCCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCccHHHhcCCC
Confidence 457889888754 5999999999999999 589999874 58999988778753
No 11
>PRK11519 tyrosine kinase; Provisional
Probab=96.01 E-value=0.0073 Score=68.95 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=47.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccccCCCCCCceee
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGGAAGGGYSQV 132 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv 132 (564)
...|.|+||+..| ||||||++..|+.+| +..|+++.+. +|.|++.-.||... .-|.+.+
T Consensus 524 ~~~kvi~vts~~~---geGKTt~a~nLA~~l-a~~g~rvLlID~Dlr~~~~~~~~~~~~---~~gl~~~ 585 (719)
T PRK11519 524 AQNNVLMMTGVSP---SIGKTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN---VNGLSDI 585 (719)
T ss_pred CCceEEEEECCCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCcHHHHhCCCC---CCCHHHH
Confidence 4578999998776 999999999999999 5899998765 89999988888753 2355544
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.95 E-value=0.0086 Score=56.89 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
++-|.|.||+. --|+||||++..|+.+| ++.|+++.+. ++.|++.-.||..+
T Consensus 15 ~~~kvI~v~s~---kgG~GKTt~a~~LA~~l-a~~G~rVllID~D~~~~~l~~~~~~~~ 69 (204)
T TIGR01007 15 AEIKVLLITSV---KPGEGKSTTSANIAVAF-AQAGYKTLLIDGDMRNSVMSGTFKSQN 69 (204)
T ss_pred CCCcEEEEecC---CCCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCChhHHHHhCCCC
Confidence 44788988765 45999999999999999 5889998743 78888776676653
No 13
>CHL00175 minD septum-site determining protein; Validated
Probab=95.90 E-value=0.01 Score=59.23 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=42.1
Q ss_pred cCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 64 ~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+.++.+|.|.|++ +.=|.||||++..|+.+| ++.|+++.+. ++.+++.-.||+..
T Consensus 10 ~~~~~~~vi~v~s---~KGGvGKTt~a~nLA~~L-a~~g~~vlliD~D~~~~~l~~~lg~~~ 67 (281)
T CHL00175 10 KSATMSRIIVITS---GKGGVGKTTTTANLGMSI-ARLGYRVALIDADIGLRNLDLLLGLEN 67 (281)
T ss_pred hcCCCceEEEEEc---CCCCCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCChhhhcCCCC
Confidence 3345688887775 456999999999999999 4889997765 44567777787753
No 14
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.47 E-value=0.017 Score=61.75 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCHHHHHHHcCCCCcccccc--------------cCc--eeeecchhhhhc-------cCCCCCcEEEEeecCCCCCCC
Q 008480 28 PLHISEIAQELNLKPNHYDLY--------------GKY--KAKVLLSVLDEL-------EGSADGYYVVVGGITPTPLGE 84 (564)
Q Consensus 28 ~~pI~~ia~~lgl~~~~l~~Y--------------G~~--kAKi~~~~l~~~-------~~~~~gklIlVTaitPTP~GE 84 (564)
..+|.|+|+.+|++++-|-.| |+. +.-.+++-+.++ ..++.|.-.-|-+|.--.-|.
T Consensus 39 ~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGV 118 (388)
T PRK13705 39 RWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGV 118 (388)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCc
Confidence 448999999999998888777 331 111333322211 122334222233455668899
Q ss_pred CcchhHHHHHHHHhhhcCCceEEE-e--cCCCCCCccc
Q 008480 85 GKSTTTVGLCQALGAFLDKKVVTC-L--RQPSQGPTFG 119 (564)
Q Consensus 85 GKtTttIGL~qaL~~~lgk~~~~~-l--RePSlGP~FG 119 (564)
|||||++.|+.+| ++.|+++.+. + .|-|+-..||
T Consensus 119 GKTT~a~nLA~~L-A~~G~rVLlID~~DpQ~nlt~~~g 155 (388)
T PRK13705 119 YKTSVSVHLAQDL-ALKGLRVLLVEGNDPQGTASMYHG 155 (388)
T ss_pred hHHHHHHHHHHHH-HhcCCCeEEEcCCCCCCchhhhcC
Confidence 9999999999999 5899998765 2 5656655565
No 15
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.41 E-value=0.013 Score=66.85 Aligned_cols=51 Identities=16% Similarity=0.022 Sum_probs=42.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiK 121 (564)
...|.|.||+-. -||||||++..|+.+| ++.|+++.+. +|.||+.-.||+.
T Consensus 544 ~~~kvi~vts~~---~G~GKTt~a~nLA~~l-A~~g~rvLlID~D~~~~~l~~~~~~~ 597 (754)
T TIGR01005 544 AEPEVVETQRPR---PVLGKSDIEANAAALI-ASGGKRALLIDADGRKAALSQILVAR 597 (754)
T ss_pred CCceEEEeecCC---CCCChhHHHHHHHHHH-HhCCCeEEEEeCCCCchhHHHHhCCc
Confidence 457888888654 4899999999999999 5899998765 7999998888864
No 16
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.20 E-value=0.021 Score=65.31 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=43.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiK 121 (564)
..+|.|+||+-.| ||||||++..|+.+| +..|+++.+. +|.|++--.||+.
T Consensus 529 ~~~kvI~vtS~~~---g~GKTtva~nLA~~l-a~~G~rVLlID~D~r~~~l~~~~~~~ 582 (726)
T PRK09841 529 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVS 582 (726)
T ss_pred CCCeEEEEecCCC---CCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCcHHHHcCCC
Confidence 4579999997654 999999999999999 5999998854 8999988778765
No 17
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.19 E-value=0.031 Score=59.87 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=58.2
Q ss_pred CCCHHHHHHHcCCCCcccccc--------------cCceee--ecchhhhh-------ccCCCCCc-EEEEeecCCCCCC
Q 008480 28 PLHISEIAQELNLKPNHYDLY--------------GKYKAK--VLLSVLDE-------LEGSADGY-YVVVGGITPTPLG 83 (564)
Q Consensus 28 ~~pI~~ia~~lgl~~~~l~~Y--------------G~~kAK--i~~~~l~~-------~~~~~~gk-lIlVTaitPTP~G 83 (564)
.-.|.|+|+.+|+++..|-.| |+-..+ .+++-+.. ...++.++ ..++ ++.-..-|
T Consensus 39 ~f~~~eaA~l~gvs~~~lr~~~~~g~~p~~~~~~~gr~~~R~~ytl~eI~~lr~~~~~~~~r~~~~~~~vI-av~n~KGG 117 (387)
T PHA02519 39 RWGITEVADLIGVTPQAIRDAEKSGRLPPPDFETRGRVERRAGYTIDQISHMRDHFGNPNQRPDDKNPVVL-AVMSHKGG 117 (387)
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCcccccceEcHHHHHHHHHHhhccccCcCCCCceEE-EEecCCCC
Confidence 348999999999998777655 321112 33322221 22233443 2322 33355779
Q ss_pred CCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccc
Q 008480 84 EGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGI 120 (564)
Q Consensus 84 EGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGi 120 (564)
.||||||+-|+++| +..|+++.+. -.|.|+--.||.
T Consensus 118 VGKTTta~nLA~~L-A~~G~rVLlIDl~DpQ~nlt~~~g~ 156 (387)
T PHA02519 118 VYKTSSAVHTAQWL-ALQGHRVLLIEGNDPQGTASMYHGY 156 (387)
T ss_pred CcHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCCcccccCc
Confidence 99999999999999 5899998764 356677767764
No 18
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.16 E-value=0.023 Score=60.22 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=37.8
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 60 l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+..+.++++| |||||+ |-|+|||||--.+.+-+| +--...|+++-.|
T Consensus 117 ~~~~~~~~~G-LILVTG----pTGSGKSTTlAamId~iN-~~~~~HIlTIEDP 163 (353)
T COG2805 117 VRELAESPRG-LILVTG----PTGSGKSTTLAAMIDYIN-KHKAKHILTIEDP 163 (353)
T ss_pred HHHHHhCCCc-eEEEeC----CCCCcHHHHHHHHHHHHh-ccCCcceEEecCc
Confidence 3345556788 999999 459999999999999996 6677778888775
No 19
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=94.98 E-value=0.033 Score=58.72 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhhcCCc---EEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCC
Q 008480 437 VNLARHIANTKAYGAN---VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP 513 (564)
Q Consensus 437 ~NL~kHIeNi~~fGvP---vVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~ 513 (564)
.|+.|.++.+++.|.+ .-+.+|++..+ .+ +.++|++.|++ + -|.+..-+.|.++..+.
T Consensus 191 ~~v~kai~~~~~lg~~~~i~GlViNr~d~~--~~---ie~~ae~lgi~-v----------Lg~IP~D~~V~~a~~~g--- 251 (329)
T cd02033 191 NNVCNAVEYFRKLGGNVGVAGMVINKDDGT--GE---AQAFAAHAGIP-I----------LAAIPADEELRRKSAAY--- 251 (329)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEeCcCCc--ch---HHHHHHHhCCC-E----------EEECCCCHHHHHHHHcC---
Confidence 3778888888888654 45888997543 23 56778888887 4 23355566777776542
Q ss_pred CcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHh
Q 008480 514 LKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNAS 549 (564)
Q Consensus 514 fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kq 549 (564)
++++..+.++.+.++.||+ |...-.+.-.+.-.++
T Consensus 252 -~~~~~p~s~~a~~f~~LA~~I~~~~~~~~~~~~~~~ 287 (329)
T cd02033 252 -QIVGRPGTTWGPLFEQLATNVAEAPPMRPKPLSQDE 287 (329)
T ss_pred -CeecCCCCHHHHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 2455556678889999999 8776665544444333
No 20
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=94.94 E-value=0.035 Score=58.66 Aligned_cols=91 Identities=25% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCHHHHHHHcCCCCcccccc---cC-ceeee--------c---chhhhh---c---------cCCCCCcEEEEeecCCCC
Q 008480 29 LHISEIAQELNLKPNHYDLY---GK-YKAKV--------L---LSVLDE---L---------EGSADGYYVVVGGITPTP 81 (564)
Q Consensus 29 ~pI~~ia~~lgl~~~~l~~Y---G~-~kAKi--------~---~~~l~~---~---------~~~~~gklIlVTaitPTP 81 (564)
-+|.|+|+.+|++++-|-.| |. +..+- + +..|.. . ..++.|+-.-|-+++-..
T Consensus 34 ~~i~eva~~~gv~~~tlr~~e~~~~~~~~~r~~~g~r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~K 113 (387)
T TIGR03453 34 FTSGEVAKLLGVSDSYLRQLSLEGKGPEPETLSNGRRSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFK 113 (387)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCceeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccC
Confidence 48999999999998876654 10 00010 1 111111 0 112233222333444567
Q ss_pred CCCCcchhHHHHHHHHhhhcCCceEEEe--cCCCCCCcccc
Q 008480 82 LGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGI 120 (564)
Q Consensus 82 ~GEGKtTttIGL~qaL~~~lgk~~~~~l--RePSlGP~FGi 120 (564)
-|+||||||+-|+.+| +..|+++.+.= -|+|+.-.||.
T Consensus 114 GGvGKTT~a~nLA~~L-a~~G~rVLlID~DpQ~~ls~~~g~ 153 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYL-ALRGYRVLAIDLDPQASLSALFGY 153 (387)
T ss_pred CCcCHHHHHHHHHHHH-HhcCCCEEEEecCCCCCHHHHcCC
Confidence 7999999999999999 48899976541 35666656664
No 21
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=94.63 E-value=0.025 Score=51.98 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=29.3
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCC
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSl 114 (564)
||+|-.|+||||++.||+.+| ++-|+++. ++.|.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l-~~~g~~V~--~~kP~~ 36 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKL-KKAGYSVG--YYKPVQ 36 (166)
T ss_pred eecCCCCccHHHHHHHHHHHH-HHCCCcEE--EEEeee
Confidence 689999999999999999999 58898864 455554
No 22
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.57 E-value=0.042 Score=53.11 Aligned_cols=48 Identities=35% Similarity=0.328 Sum_probs=34.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec---CCCCCCcccc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR---QPSQGPTFGI 120 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR---ePSlGP~FGi 120 (564)
||.|.|++ +.-|.||||++..|+.+| ++.|+++.+.=- +|++.-.||.
T Consensus 1 ~~ii~v~s---~kGGvGKTt~a~~lA~~l-a~~g~~vlliD~D~~~~~~~~~lg~ 51 (261)
T TIGR01968 1 ARVIVITS---GKGGVGKTTTTANLGTAL-ARLGKKVVLIDADIGLRNLDLLLGL 51 (261)
T ss_pred CeEEEEec---CCCCccHHHHHHHHHHHH-HHcCCeEEEEECCCCCCCeeEEeCC
Confidence 56676654 567999999999999999 488999876633 3444444544
No 23
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.50 E-value=0.03 Score=56.90 Aligned_cols=52 Identities=37% Similarity=0.381 Sum_probs=44.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE---EecCCCCCCccccccC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKGG 123 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~---~lRePSlGP~FGiKGG 123 (564)
..+.|.|| ..+-|+||||||.-|+.+| ++.|+++.+ -+|.||+-..||+...
T Consensus 56 ~~~~I~V~---S~kgGvGKStva~nLA~al-A~~G~rVlliDaD~~gps~~~~l~~~~~ 110 (265)
T COG0489 56 VKNVIAVT---SGKGGVGKSTVAVNLAAAL-AQLGKRVLLLDADLRGPSIPRMLGLENL 110 (265)
T ss_pred cceEEEEE---eCCCCCcHHHHHHHHHHHH-HhcCCcEEEEeCcCCCCchHHHhCCCCC
Confidence 46677776 4677999999999999999 699999875 4999999999999554
No 24
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=93.90 E-value=0.044 Score=52.71 Aligned_cols=52 Identities=35% Similarity=0.486 Sum_probs=39.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE---EecCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~---~lRePSlGP~FGiK 121 (564)
..+|.|.||+ ..-|+||||++..|+.+|....|+++.+ .++.|++...||+.
T Consensus 33 ~~~~vi~v~s---~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 33 KNNNLIMVTS---SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 4578877764 5679999999999999995235999764 46778887777665
No 25
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.57 E-value=0.059 Score=53.99 Aligned_cols=47 Identities=30% Similarity=0.322 Sum_probs=39.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
|+|++|+ .-|+||||++..|+.++ ++.|+++.+. .| ||++-+||++-
T Consensus 1 ~~~~~~g----kgG~GKtt~a~~la~~~-a~~g~~vLlvd~D~~-~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGG----KGGVGKTTISAATAVRL-AEQGKKVLLVSTDPA-HSLSDSFNQEF 50 (254)
T ss_pred CEEEEEC----CCCchHHHHHHHHHHHH-HHCCCCceEEeCCCc-ccHHHHhCCcc
Confidence 4677775 47999999999999999 5899998764 44 79999999984
No 26
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.32 E-value=0.075 Score=42.50 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 83 GEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 83 GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
|+||||++..|++.| ++.|++..+.
T Consensus 9 G~Gktt~~~~l~~~l-~~~g~~v~~~ 33 (99)
T cd01983 9 GVGKTTLAANLAAAL-AKRGKRVLLI 33 (99)
T ss_pred CCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 999999999999999 4778876443
No 27
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=93.28 E-value=0.11 Score=55.92 Aligned_cols=42 Identities=33% Similarity=0.365 Sum_probs=30.0
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe--cCCCCCCccc
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFG 119 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l--RePSlGP~FG 119 (564)
+.-..=|.||||||+-|+++| ++.|+++.+.= -|.|+--.||
T Consensus 126 v~n~KGGvGKTTta~nLA~~L-A~~G~rVLlIDlDpQ~~lt~~~g 169 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYL-ALQGYRVLAVDLDPQASLSALLG 169 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHH-HhcCCceEEEcCCCCCCHHHHcC
Confidence 334577999999999999999 58999976542 3444333354
No 28
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.28 E-value=0.089 Score=48.68 Aligned_cols=36 Identities=36% Similarity=0.238 Sum_probs=28.7
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+++-..-|+||||+++.|+.+| +..|+++.+.=..|
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~l-a~~g~~vllvD~D~ 38 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALAL-AKLGYKVGLLDADI 38 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHH-HHcCCcEEEEeCCC
Confidence 3445567999999999999999 58899988763443
No 29
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.00 E-value=0.091 Score=47.79 Aligned_cols=42 Identities=40% Similarity=0.377 Sum_probs=31.7
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccc
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFG 119 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FG 119 (564)
++-+.-|.||||++..|+.+| ++.|+++.+. .++|++...||
T Consensus 4 v~~~kgG~GKtt~a~~la~~l-~~~g~~vllvD~D~~~~~~~~~~~ 48 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTAL-AQLGYKVVLIDADLGLRNLDLILG 48 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCchhhcc
Confidence 345677999999999999999 5889998776 45555544443
No 30
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.93 E-value=0.096 Score=48.29 Aligned_cols=40 Identities=38% Similarity=0.699 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGi 120 (564)
+.|.+|+..+ ++|.||||.+.|++++|+ +.++--=|||.+
T Consensus 13 ~~g~vi~L~G----dLGaGKTtf~r~l~~~lg----------~~~~V~SPTF~l 52 (123)
T PF02367_consen 13 KPGDVILLSG----DLGAGKTTFVRGLARALG----------IDEEVTSPTFSL 52 (123)
T ss_dssp SS-EEEEEEE----STTSSHHHHHHHHHHHTT------------S----TTTTS
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHcC----------CCCCcCCCCeEE
Confidence 5689999998 799999999999999995 223455577875
No 31
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.26 E-value=0.15 Score=49.04 Aligned_cols=39 Identities=38% Similarity=0.416 Sum_probs=29.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSl 114 (564)
.|-|++ .-|.||||+|.-|+.+| ++.|+++.+.=-.|-.
T Consensus 2 ~iav~g----KGGvGKTt~~~nLA~~l-a~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYG----KGGIGKSTTSQNLSAAL-AEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEEC----CCcCcHHHHHHHHHHHH-HHCCCcEEEEeCCCCC
Confidence 355553 78999999999999999 5899997655344443
No 32
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.18 E-value=0.16 Score=50.38 Aligned_cols=39 Identities=38% Similarity=0.346 Sum_probs=30.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+|.|-|+ + .-|.|||||++-|+.+| ++.|+++.+.=-.|
T Consensus 2 ~~iIav~--~--KGGVGKTT~~~nLA~~l-a~~G~kVLliD~Dp 40 (270)
T PRK13185 2 ALVLAVY--G--KGGIGKSTTSSNLSAAF-AKLGKKVLQIGCDP 40 (270)
T ss_pred ceEEEEE--C--CCCCCHHHHHHHHHHHH-HHCCCeEEEEeccC
Confidence 4556663 3 89999999999999999 58999977653455
No 33
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=92.01 E-value=0.18 Score=51.81 Aligned_cols=36 Identities=44% Similarity=0.436 Sum_probs=30.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
||.|+||+ -.-|-||||||--|+-|| +++||++++.
T Consensus 2 ~~iIVvTS---GKGGVGKTTttAnig~aL-A~~GkKv~li 37 (272)
T COG2894 2 ARIIVVTS---GKGGVGKTTTTANIGTAL-AQLGKKVVLI 37 (272)
T ss_pred ceEEEEec---CCCCcCccchhHHHHHHH-HHcCCeEEEE
Confidence 67888875 578999999999999999 6999998753
No 34
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.77 E-value=0.19 Score=56.15 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=35.9
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 59 ~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.+.++-.+|.| +||||| |.|+|||||--.+.+-|+ .-.++ ++++=.|=
T Consensus 249 ~~~~~~~~p~G-liLvTG----PTGSGKTTTLY~~L~~ln-~~~~n-I~TiEDPV 296 (500)
T COG2804 249 RLLRLLNRPQG-LILVTG----PTGSGKTTTLYAALSELN-TPERN-IITIEDPV 296 (500)
T ss_pred HHHHHHhCCCe-EEEEeC----CCCCCHHHHHHHHHHHhc-CCCce-EEEeeCCe
Confidence 33444556888 999998 679999999888888884 44444 88887763
No 35
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.51 E-value=0.2 Score=48.23 Aligned_cols=45 Identities=33% Similarity=0.330 Sum_probs=33.4
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe---cCCCCCCccccc
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL---RQPSQGPTFGIK 121 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l---RePSlGP~FGiK 121 (564)
++.-..-|.||||+++.|+.+| ++.|+++.+.= .++++.-.||++
T Consensus 4 ~v~~~KGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 4 TIASGKGGTGKTTITANLGVAL-AKLGKKVLALDADITMANLELILGME 51 (251)
T ss_pred EEEcCCCCCcHHHHHHHHHHHH-HHCCCeEEEEeCCCCCccceeEeCCC
Confidence 3445678999999999999999 48899876652 345665556654
No 36
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.48 E-value=0.12 Score=53.69 Aligned_cols=49 Identities=33% Similarity=0.401 Sum_probs=39.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC--CCCCccccccC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGG 123 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP--SlGP~FGiKGG 123 (564)
|+|+++| .=|.||||+|..++.++ ++.|+++.++==.| |+|.+||.+-|
T Consensus 2 r~~~~~G----KGGVGKTT~aaA~A~~~-A~~G~rtLlvS~Dpa~~L~d~l~~~~~ 52 (305)
T PF02374_consen 2 RILFFGG----KGGVGKTTVAAALALAL-ARRGKRTLLVSTDPAHSLSDVLGQKLG 52 (305)
T ss_dssp SEEEEEE----STTSSHHHHHHHHHHHH-HHTTS-EEEEESSTTTHHHHHHTS--B
T ss_pred eEEEEec----CCCCCcHHHHHHHHHHH-hhCCCCeeEeecCCCccHHHHhCCcCC
Confidence 5777777 57999999999999999 58899998887666 68889999753
No 37
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.41 E-value=0.14 Score=50.31 Aligned_cols=27 Identities=52% Similarity=0.492 Sum_probs=24.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.=|.||||||..|+.+| ++.|+++.+.
T Consensus 9 KGGvGKTT~~~nLA~~L-a~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAAL-AEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 88999999999999999 5899987765
No 38
>PLN02924 thymidylate kinase
Probab=91.29 E-value=0.25 Score=49.01 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
++.|++|.+.|+ -|.||||.+--|.+.|. ..|.++ ..+|||..+.
T Consensus 13 ~~~g~~IviEGi----DGsGKsTq~~~L~~~l~-~~g~~v-~~~~ep~~~~ 57 (220)
T PLN02924 13 ESRGALIVLEGL----DRSGKSTQCAKLVSFLK-GLGVAA-ELWRFPDRTT 57 (220)
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCc-eeeeCCCCCC
Confidence 356999999997 69999999999999995 678886 6789997543
No 39
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.28 E-value=0.25 Score=50.56 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+++.|.+++ |-|+|||||+.-|+..| ...|+++.+
T Consensus 71 ~~~vi~l~G----~~G~GKTTt~akLA~~l-~~~g~~V~l 105 (272)
T TIGR00064 71 KPNVILFVG----VNGVGKTTTIAKLANKL-KKQGKSVLL 105 (272)
T ss_pred CCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCEEEE
Confidence 467888885 78999999999999999 477876643
No 40
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.20 E-value=0.8 Score=48.02 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=102.5
Q ss_pred HHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceec-CceeEEeccccchhcccCchH
Q 008480 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLE-GTPVLVHAGPFANIAHGNSSI 350 (564)
Q Consensus 272 AIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlE-gtPa~vHgGPFANIAhG~nSi 350 (564)
.+.|=-+-++.-+.++|+|+-+.+..|-|++-..|++-=..++=|-+++|-+- .| .-.++|-+-|= -||+ |
T Consensus 108 ~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a---~E~~~~~IIDsaaG----~gCp-V 179 (284)
T COG1149 108 SIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA---KELADLLIIDSAAG----TGCP-V 179 (284)
T ss_pred eeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhh---hhhcceeEEecCCC----CCCh-H
Confidence 34455555677888999999999988879999888875444333333222110 01 33344443332 2343 2
Q ss_pred HHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHH
Q 008480 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVA 430 (564)
Q Consensus 351 iAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~ 430 (564)
+| +++ | -|.+++|+ -| -
T Consensus 180 i~---sl~--------------~-------------------aD~ai~VT----------EP-------T---------- 196 (284)
T COG1149 180 IA---SLK--------------G-------------------ADLAILVT----------EP-------T---------- 196 (284)
T ss_pred HH---hhc--------------c-------------------CCEEEEEe----------cC-------C----------
Confidence 22 111 1 36688887 11 1
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEeccc-CCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAVNMF-ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F-~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
-.|+-.|+|-+|-++.||+|+++.|||+ +.|+ || +++|++.|++ +...=-| -+.+.++..+
T Consensus 197 --p~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~i---e~~~~e~gi~-il~~IPy----------d~~i~~~~~~ 258 (284)
T COG1149 197 --PFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EI---EEYCEEEGIP-ILGEIPY----------DKDIPEAYVN 258 (284)
T ss_pred --ccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HH---HHHHHHcCCC-eeEECCc----------chhHHHHHhC
Confidence 2467789999999999999999999999 2333 55 7999999997 5433223 3455555543
Q ss_pred CCCCCcccCCCCCCHHHHHHHHHh-Hh
Q 008480 510 VTQPLKFLYPLDVSIKEKIDTIAR-SY 535 (564)
Q Consensus 510 ~~~~fk~LYd~~~~I~eKIetIA~-IY 535 (564)
. +++-..++.-.+++..+.. +|
T Consensus 259 g----~~~~~~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 259 G----EPFVEPDSKEAEAILEEAEKLK 281 (284)
T ss_pred C----CccccccchHHHHHHHHHHHHH
Confidence 2 2222245555566665555 44
No 41
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.18 E-value=0.14 Score=51.22 Aligned_cols=31 Identities=42% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.=|.|||||++.|+.+| ++.|+++.+.==.|
T Consensus 9 KGGVGKTT~a~nLA~~L-a~~G~rVLliD~Dp 39 (279)
T PRK13230 9 KGGIGKSTTVCNIAAAL-AESGKKVLVVGCDP 39 (279)
T ss_pred CCCCcHHHHHHHHHHHH-HhCCCEEEEEeeCC
Confidence 77999999999999999 59999976653344
No 42
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.17 E-value=0.25 Score=46.30 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=35.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
.|++|.|.|+ -|.||||.+--|.+.|+ ..|. .+...|+|+ +-.+|
T Consensus 2 ~~~~I~ieG~----~gsGKsT~~~~L~~~l~-~~~~-~~~~~~~p~-~~~~~ 46 (205)
T PRK00698 2 RGMFITIEGI----DGAGKSTQIELLKELLE-QQGR-DVVFTREPG-GTPLG 46 (205)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHHH-HcCC-ceeEeeCCC-CChHH
Confidence 3889999985 69999999999999995 6674 466789998 43343
No 43
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.90 E-value=0.16 Score=50.29 Aligned_cols=31 Identities=42% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.=|.||||||+-|+.+| ++.|+++.+.==.|
T Consensus 8 KGGVGKTT~~~nLA~~L-a~~g~rVLliD~D~ 38 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAF-AKLGKRVLQIGCDP 38 (268)
T ss_pred CCcCcHHHHHHHHHHHH-HhCCCeEEEEecCc
Confidence 67999999999999999 58899976542344
No 44
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.50 E-value=0.39 Score=49.34 Aligned_cols=51 Identities=25% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiK 121 (564)
+.||.|.|++ ..-|.||||++..|+.+| ++.|+++.+. .+.+++.-.||++
T Consensus 91 ~~~~vIav~~---~KGGvGkTT~a~nLA~~l-a~~g~~VlLvD~D~~~~~~~~~lg~~ 144 (322)
T TIGR03815 91 ARGVVVAVIG---GRGGAGASTLAAALALAA-ARHGLRTLLVDADPWGGGLDLLLGAE 144 (322)
T ss_pred CCceEEEEEc---CCCCCcHHHHHHHHHHHH-HhcCCCEEEEecCCCCCCeeeeecCC
Confidence 4688888776 567999999999999999 5889887664 2333333445554
No 45
>PRK10037 cell division protein; Provisional
Probab=90.33 E-value=0.26 Score=48.74 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE-e-cCCCCCCcccc
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC-L-RQPSQGPTFGI 120 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~-l-RePSlGP~FGi 120 (564)
++.-..-|.|||||++.|+.+| ++.|+++.+. + .|.++.-.||.
T Consensus 5 av~n~KGGvGKTT~a~nLA~~L-a~~G~rVLlID~D~q~~~s~~~g~ 50 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSL-QMLGENVLVIDACPDNLLRLSFNV 50 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHH-HhcCCcEEEEeCChhhhHHHHhCC
Confidence 4445678999999999999999 5899997654 2 23344444544
No 46
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=90.32 E-value=0.22 Score=45.78 Aligned_cols=33 Identities=36% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
+-+--|.||||+|..|+.+|. +.|+++.+.=-.
T Consensus 4 ~~~kGG~GKTt~a~~la~~la-~~g~~VlliD~D 36 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALA-RKGKKVLLIDLD 36 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHH-HTTS-EEEEEES
T ss_pred EcCCCCccHHHHHHHHHhccc-cccccccccccC
Confidence 345679999999999999995 789998765443
No 47
>PRK10436 hypothetical protein; Provisional
Probab=90.09 E-value=0.28 Score=54.13 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=31.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
++.| +|||||-| |+|||||--.+...++ ..+ ..++.+=.|-
T Consensus 216 ~~~G-liLvtGpT----GSGKTTtL~a~l~~~~-~~~-~~i~TiEDPv 256 (462)
T PRK10436 216 QPQG-LILVTGPT----GSGKTVTLYSALQTLN-TAQ-INICSVEDPV 256 (462)
T ss_pred hcCC-eEEEECCC----CCChHHHHHHHHHhhC-CCC-CEEEEecCCc
Confidence 3545 99999944 9999999888778884 545 4578888774
No 48
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=90.05 E-value=0.21 Score=49.76 Aligned_cols=27 Identities=48% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 8 KGGVGKTT~a~nLA~~L-a~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAAL-AEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 77999999999999999 5889886553
No 49
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.00 E-value=0.47 Score=43.57 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=33.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
++|.+.| |-|.||||.+--|++.|. ..|.++ +.+++|+-++
T Consensus 1 ~~I~ieG----~~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~~~ 41 (200)
T cd01672 1 MFIVFEG----IDGAGKTTLIELLAERLE-ARGYEV-VLTREPGGTP 41 (200)
T ss_pred CEEEEEC----CCCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCCCc
Confidence 4677777 469999999999999995 778886 7899997543
No 50
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.95 E-value=0.33 Score=45.87 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
+.|++|+++| |.|.||||++.-|.+-+. .+.......-|+|..|-
T Consensus 3 ~~g~~i~i~G----~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 3 RRGLLIVLSG----PSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCC
Confidence 4699999999 789999999888887763 55665566788988764
No 51
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.86 E-value=0.41 Score=47.64 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=38.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
+|++|.+-|| -|.||||.+--|.+-| ...|. .++..|||+-+|+
T Consensus 2 ~g~fI~iEGi----DGaGKTT~~~~L~~~l-~~~g~-~v~~trEP~~~~i 45 (208)
T COG0125 2 KGMFIVIEGI----DGAGKTTQAELLKERL-EERGI-KVVLTREPGGTPI 45 (208)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHH-HHcCC-eEEEEeCCCCChH
Confidence 5899999998 6999999999999999 57788 5788999987654
No 52
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.82 E-value=0.31 Score=45.49 Aligned_cols=43 Identities=37% Similarity=0.557 Sum_probs=32.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGG 123 (564)
+.|++|++.| +.|.||||.+.|++++|+ . .++=--|||.+.--
T Consensus 20 ~~~~~i~l~G----~lGaGKTtl~~~l~~~lg-~---------~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 20 DFGTVVLLKG----DLGAGKTTLVQGLLQGLG-I---------QGNVTSPTFTLVNE 62 (133)
T ss_pred CCCCEEEEEc----CCCCCHHHHHHHHHHHcC-C---------CCcccCCCeeeeee
Confidence 5688999988 799999999999999985 2 22334677877543
No 53
>PRK11670 antiporter inner membrane protein; Provisional
Probab=89.77 E-value=0.37 Score=51.43 Aligned_cols=47 Identities=32% Similarity=0.323 Sum_probs=36.9
Q ss_pred EeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccc
Q 008480 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (564)
Q Consensus 74 VTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiK 121 (564)
|-+++..--|+||||||+.|+.+| ++.|+++.+. ++-||+-=.||+.
T Consensus 109 vIaV~S~KGGVGKTT~avNLA~aL-A~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 109 IIAVSSGKGGVGKSSTAVNLALAL-AAEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCCCCcchhcCCc
Confidence 334456677999999999999999 5899998765 7778775567664
No 54
>PHA02518 ParA-like protein; Provisional
Probab=89.72 E-value=0.25 Score=46.34 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 79 PTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
-..=|.||||+++.|+.+| ++.|+++.+.
T Consensus 7 ~~KGGvGKTT~a~~la~~l-a~~g~~vlli 35 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWL-HADGHKVLLV 35 (211)
T ss_pred cCCCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 3456899999999999999 5889887644
No 55
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=89.63 E-value=0.3 Score=48.81 Aligned_cols=37 Identities=38% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
-.=|.|||||++.|+.+| ++.|+++.+.==.|-.-=+
T Consensus 8 ~KGGVGKTT~~~nLA~~L-a~~G~rVLlID~Dpq~~~t 44 (274)
T PRK13235 8 GKGGIGKSTTTQNTVAGL-AEMGKKVMVVGCDPKADST 44 (274)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCcEEEEecCCccccc
Confidence 388999999999999999 5899997765344444333
No 56
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=89.59 E-value=0.25 Score=47.63 Aligned_cols=30 Identities=33% Similarity=0.285 Sum_probs=25.7
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
|++|-.|.|||++|.||+++| .+.|+++..
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l-~~~g~~v~~ 33 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQAL-REAGYSVAG 33 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHH-HHcCCceEE
Confidence 457788999999999999999 588998643
No 57
>PRK10646 ADP-binding protein; Provisional
Probab=89.35 E-value=0.36 Score=46.19 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=24.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|.+|+..+ ++|.||||.+.||+++|+
T Consensus 26 ~~g~vi~L~G----dLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYG----DLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4588999888 799999999999999995
No 58
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=89.18 E-value=0.54 Score=44.03 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSl 114 (564)
|++|.++|+ -|.||||.+--|.+.|+ ..|.++ ..+++|+-
T Consensus 3 g~~IvieG~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~ 42 (195)
T TIGR00041 3 GMFIVIEGI----DGAGKTTQANLLKKLLQ-ENGYDV-LFTREPGG 42 (195)
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence 899999996 59999999999999995 678775 46888863
No 59
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=89.17 E-value=0.39 Score=47.68 Aligned_cols=39 Identities=41% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccc
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGi 120 (564)
.=|.|||||++-|+.+| ++.|+++.+.==.|...=++++
T Consensus 8 KGGvGKTT~a~nLA~~l-a~~G~rvlliD~Dpq~~~~~~l 46 (267)
T cd02032 8 KGGIGKSTTSSNLSVAL-AKRGKKVLQIGCDPKHDSTFTL 46 (267)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEecCCCCCcceec
Confidence 78999999999999999 5899998766455543333333
No 60
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=89.11 E-value=0.18 Score=52.23 Aligned_cols=35 Identities=49% Similarity=0.472 Sum_probs=27.2
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCC
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQG 115 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlG 115 (564)
-.=|.||||||+=|+-|| .+.|+++.+. +||||+.
T Consensus 8 gKGGvGKSTva~~lA~aL-a~~G~kVg~lD~Di~q~S~~ 45 (261)
T PF09140_consen 8 GKGGVGKSTVAVNLAVAL-ARMGKKVGLLDLDIRQPSLP 45 (261)
T ss_dssp SSTTTTHHHHHHHHHHHH-HCTT--EEEEE--TTT-HHH
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCeEEEEecCCCCCCHH
Confidence 456999999999999999 6999998754 7888875
No 61
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=89.11 E-value=0.34 Score=49.70 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
-.-|.|||||++-|+.+| ++.|+++.+.
T Consensus 11 ~KGGvGKTt~~~nLa~~l-a~~g~kVLli 38 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAAL-VEMGQKILIV 38 (295)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 588999999999999999 5999998766
No 62
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=88.97 E-value=0.36 Score=48.27 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhcCCcEE-EEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 437 VNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 437 ~NL~kHIeNi~~fGvPvV-VAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
..+.+.++.++.-++++. +.+|++..+.+.| .+.++.+..|.. + . |.+-.-..|.++..+. .++
T Consensus 160 ~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~--~~e~l~~~~~~~-v-l---------~~Ip~~~~v~~A~~~g-~pv- 224 (273)
T PRK13232 160 NNICKGLAKFAKGGARLGGIICNSRNVDGERE--LLEAFAKKLGSQ-L-I---------HFVPRDNIVQRAEINR-KTV- 224 (273)
T ss_pred HHHHHHHHHHhCCCCceeEEEEeCCCCCccHH--HHHHHHHHhCCC-e-E---------EECCCCHHHHHHHHcC-CCe-
Confidence 346677777666677774 7789886544333 344444455543 2 1 2455566777776542 222
Q ss_pred ccCCCCCCHHHHHHHHHh-HhCCCc
Q 008480 516 FLYPLDVSIKEKIDTIAR-SYGASG 539 (564)
Q Consensus 516 ~LYd~~~~I~eKIetIA~-IYGA~~ 539 (564)
+.|+.+.+..+.++.+|+ +-+...
T Consensus 225 ~~~~p~s~~a~~y~~La~el~~~~~ 249 (273)
T PRK13232 225 IDFDPESNQAKEYLTLAHNVQNNDK 249 (273)
T ss_pred EEeCCCChHHHHHHHHHHHHHhCCC
Confidence 456667778888999999 876644
No 63
>PRK13973 thymidylate kinase; Provisional
Probab=88.67 E-value=0.63 Score=45.33 Aligned_cols=42 Identities=31% Similarity=0.410 Sum_probs=35.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
|++|++-|+ -|.||||.+-.|.+.|. ..|.++ ...|+|+..|
T Consensus 3 g~~IviEG~----dGsGKtTq~~~l~~~l~-~~g~~~-~~~~~p~~~~ 44 (213)
T PRK13973 3 GRFITFEGG----EGAGKSTQIRLLAERLR-AAGYDV-LVTREPGGSP 44 (213)
T ss_pred ceEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCeE-EEEECCCCCc
Confidence 899999987 59999999999999995 668764 7789998544
No 64
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.46 E-value=0.4 Score=46.32 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=24.6
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.-..-|+||||+++.|+.+| ++.|+++.+.
T Consensus 7 ~s~KGGvGKTt~a~nla~~l-a~~g~~Vlli 36 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASAL-KLLGEPVLAI 36 (246)
T ss_pred EeCCCCccHHHHHHHHHHHH-HhCCCcEEEE
Confidence 34567999999999999999 5889886643
No 65
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=88.21 E-value=0.35 Score=49.69 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.=|.|||||++-|+.+| ++.|+++.+.==.|-
T Consensus 8 KGGVGKTTta~nLA~~L-a~~G~rVLlID~DpQ 39 (290)
T CHL00072 8 KGGIGKSTTSCNISIAL-ARRGKKVLQIGCDPK 39 (290)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCeEEEEeccCC
Confidence 67999999999999999 599999765544443
No 66
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=88.11 E-value=0.49 Score=45.36 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=25.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|.+|+..+ ++|.||||.+.|+++||+
T Consensus 23 ~~g~Vv~L~G----dLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSG----DLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEc----CCcCChHHHHHHHHHHcC
Confidence 4588999987 799999999999999996
No 67
>PRK04296 thymidine kinase; Provisional
Probab=88.01 E-value=0.64 Score=44.64 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGi 120 (564)
|+++|+|+ |.|.||||.+++++..+. .-|+++.+. -|++.+.+|.
T Consensus 2 g~i~litG----~~GsGKTT~~l~~~~~~~-~~g~~v~i~--k~~~d~~~~~ 46 (190)
T PRK04296 2 AKLEFIYG----AMNSGKSTELLQRAYNYE-ERGMKVLVF--KPAIDDRYGE 46 (190)
T ss_pred cEEEEEEC----CCCCHHHHHHHHHHHHHH-HcCCeEEEE--eccccccccC
Confidence 67888887 679999999999999884 568876654 4666665553
No 68
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.85 E-value=0.47 Score=53.28 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=33.2
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 60 l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+.++-.++.| +|||||- -|+|||||--.+...++ ... ..++++-.|-
T Consensus 308 l~~~~~~~~G-lilv~G~----tGSGKTTtl~a~l~~~~-~~~-~~i~tiEdpv 354 (564)
T TIGR02538 308 FLEAIHKPQG-MVLVTGP----TGSGKTVSLYTALNILN-TEE-VNISTAEDPV 354 (564)
T ss_pred HHHHHHhcCC-eEEEECC----CCCCHHHHHHHHHHhhC-CCC-ceEEEecCCc
Confidence 3333333555 9999994 39999999888878774 443 4588888873
No 69
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=87.62 E-value=0.71 Score=44.13 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=36.6
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHH
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
...++++|+|+||++|+...=.+..+. -..++.+..|++ ++. .=+..|+|-.+|-++|
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~--~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIP--VSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEE--EBTTTTBTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEE--EEeCCCcCHHHHHhhC
Confidence 345668999999999987321111111 134556678997 443 3478889988887764
No 70
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.57 E-value=0.69 Score=48.56 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.|++|++.+ |-|+|||||+.-|+-.+ ...|+++.+
T Consensus 112 ~~~~vi~lvG----pnGsGKTTt~~kLA~~l-~~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVG----VNGVGKTTTIGKLAHKY-KAQGKKVLL 147 (318)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCeEEE
Confidence 3578898888 78999999999999999 466776554
No 71
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=87.57 E-value=0.43 Score=45.35 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=26.0
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
|+||-.|.|||+++.||+++| .+.|.++. .+|
T Consensus 5 I~~t~t~vGKT~vslgL~~~l-~~~g~~v~-~~K 36 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARAL-RRRGIKVG-YFK 36 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHH-HHTTSEEE-EEE
T ss_pred EEeCCCCCCHHHHHHHHHHHH-HhCCCceE-EEe
Confidence 457888999999999999999 57787754 444
No 72
>PRK13768 GTPase; Provisional
Probab=87.28 E-value=0.78 Score=46.19 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=51.8
Q ss_pred hcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC--CCCccc-CCCCCCH
Q 008480 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFL-YPLDVSI 524 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~--~~fk~L-Yd~~~~I 524 (564)
++++|+++++|+-..-+++|.+.+.++.++ .. ...++-=..+|.= .+|-+++++..++-. ..+-++ -.....+
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~--~~-~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELERILKWLED--PE-YLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHHHHHHHHhC--HH-HHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 479999999999888778888777776552 00 0000000111221 555566665554321 122222 2335788
Q ss_pred HHHHHHHHh-HhCCCce
Q 008480 525 KEKIDTIAR-SYGASGV 540 (564)
Q Consensus 525 ~eKIetIA~-IYGA~~V 540 (564)
++=++.|.+ .||..+.
T Consensus 236 ~~L~~~I~~~l~~~~~~ 252 (253)
T PRK13768 236 DELYAAIQEVFCGGEDL 252 (253)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 888888888 8887653
No 73
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=87.12 E-value=0.55 Score=48.44 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
.-|+||||||+.|+.+|. ..|+++.+.==.|.++
T Consensus 8 KGGvGKTT~a~nLA~~La-~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMA-EMGKRVLQLGCDPKHD 41 (296)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCeEEEEEecCCCC
Confidence 689999999999999995 8899988776665444
No 74
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=86.92 E-value=0.6 Score=45.48 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.-|+||||++.+|+..+ ++.|+++.+.
T Consensus 7 ~~g~Gkt~~~~~la~~~-a~~g~~~~l~ 33 (217)
T cd02035 7 KGGVGKTTIAAATAVRL-AEEGKKVLLV 33 (217)
T ss_pred CCCchHHHHHHHHHHHH-HHCCCcEEEE
Confidence 56999999999999999 5889997765
No 75
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=86.88 E-value=0.31 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEe
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~l 109 (564)
.=|.||||||+.|+.+| ++.| + ++.+
T Consensus 10 KGGvGKTT~a~nLA~~L-a~~G-r-VLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAY-SNDH-R-VLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhccc-CCCC-E-EEEE
Confidence 78999999999999999 5889 6 4444
No 76
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.32 E-value=0.66 Score=45.97 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+|.|-|+ -.--|.||||+++.|+-+| ++.|+++++.
T Consensus 2 ~kviav~---s~KGGvGKTt~a~nlA~~l-a~~g~~vllv 37 (270)
T PRK10818 2 ARIIVVT---SGKGGVGKTTSSAAIATGL-AQKGKKTVVI 37 (270)
T ss_pred ceEEEEE---eCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3455444 4567999999999999999 5889987765
No 77
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=86.01 E-value=0.64 Score=46.35 Aligned_cols=27 Identities=48% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCCCCcchhHHHHHHHHhhh-cCCceEE
Q 008480 80 TPLGEGKSTTTVGLCQALGAF-LDKKVVT 107 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~-lgk~~~~ 107 (564)
-.=|.|||||++-|+-+| ++ .|+++.+
T Consensus 9 ~KGGVGKTT~a~nLA~~L-a~~~G~rvLl 36 (275)
T PRK13233 9 GKGGIGKSTTTQNTAAAM-AYFHDKKVFI 36 (275)
T ss_pred cCCCCcHHHHHHHHHHHH-HHhcCCeEEE
Confidence 489999999999999999 46 6999554
No 78
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.94 E-value=0.59 Score=43.23 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=31.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
||+|++.| |-|.||||++.-|.+-+. ........+.|+|..|.
T Consensus 1 g~ii~l~G----~~GsGKsTl~~~L~~~~~-~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 1 GLLIVISG----PSGVGKSTLVKALLEEDP-NLKFSISATTRKPRPGE 43 (180)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHccCc-cccccccceeeCCCCCC
Confidence 68899988 789999998777766552 34444445678887664
No 79
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=85.83 E-value=0.61 Score=43.30 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=31.5
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEE---EecCCCCCCcccccc
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKG 122 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~---~lRePSlGP~FGiKG 122 (564)
++-.--|+||||++.-|+-+| +++.+ -+|.|++--.||+++
T Consensus 4 v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~ 47 (179)
T cd03110 4 VISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEI 47 (179)
T ss_pred EEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCc
Confidence 344567999999999999888 45443 368888888888876
No 80
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=85.18 E-value=0.52 Score=44.12 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 82 ~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
-|.||||.+--|.+.| ...|.+ +...++|+-.|+
T Consensus 5 DGsGKtT~~~~L~~~l-~~~~~~-~~~~~~~~~~~~ 38 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEAL-KEKGYK-VIITFPPGSTPI 38 (186)
T ss_dssp TTSSHHHHHHHHHHHH-HHTTEE-EEEEESSTSSHH
T ss_pred CCCCHHHHHHHHHHHH-HHcCCc-ccccCCCCCChH
Confidence 5999999999999999 588988 888899886664
No 81
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=85.16 E-value=2.2 Score=42.36 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA 474 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~ 474 (564)
.-.+|++-++..|+|+||++|+..--.+++++...+.
T Consensus 126 ~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~ 162 (224)
T cd04165 126 MTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKD 162 (224)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHH
Confidence 4568899999999999999999876556666554443
No 82
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.88 E-value=0.83 Score=46.76 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=27.1
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|.|.+ .-=|.||||+|..|+.+| +++|+++.+.
T Consensus 3 ~iai~s---~kGGvG~TTltAnLA~aL-~~~G~~VlaI 36 (243)
T PF06564_consen 3 VIAIVS---PKGGVGKTTLTANLAWAL-ARLGESVLAI 36 (243)
T ss_pred EEEEec---CCCCCCHHHHHHHHHHHH-HHCCCcEEEE
Confidence 454444 457999999999999999 6999987653
No 83
>PRK13236 nitrogenase reductase; Reviewed
Probab=84.87 E-value=0.67 Score=47.57 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.-|.|||||++-|+.+|. +.|+++.+.==.|-
T Consensus 14 KGGVGKTt~a~NLA~~La-~~G~rVLliD~D~q 45 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMA-EMGQRILIVGCDPK 45 (296)
T ss_pred CCcCCHHHHHHHHHHHHH-HCCCcEEEEEccCC
Confidence 789999999999999994 78999876634443
No 84
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=84.75 E-value=0.82 Score=39.94 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.3
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhc-CCceEEEecCCC
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQPS 113 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~l-gk~~~~~lRePS 113 (564)
+++-+.-|+||||++..|+-++ .+. |+++.+.==.|.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~-~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVAL-AKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHH-HhcCCCcEEEEECCCC
Confidence 3455678999999999999999 477 888776633443
No 85
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.67 E-value=0.97 Score=47.91 Aligned_cols=67 Identities=31% Similarity=0.345 Sum_probs=49.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC--CCCCccccccCCCCCCceeeecCcccccccchhhh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP--SlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~h 147 (564)
++|++||- =|-||||++..++=-+ +..|++..+.-=.| |+|.+|+++ +.-|..
T Consensus 3 riv~f~GK----GGVGKTT~aaA~A~~l-A~~g~kvLlvStDPAhsL~d~f~~e--------------------lg~~~~ 57 (322)
T COG0003 3 RIVFFTGK----GGVGKTTIAAATAVKL-AESGKKVLLVSTDPAHSLGDVFDLE--------------------LGHDPR 57 (322)
T ss_pred EEEEEecC----CcccHHHHHHHHHHHH-HHcCCcEEEEEeCCCCchHhhhccc--------------------cCCchh
Confidence 57888884 6999999999999999 57898876666776 677666653 225666
Q ss_pred HHHHHHhHHHHHHHhh
Q 008480 148 AITAANNLLAAAIDTR 163 (564)
Q Consensus 148 AItaA~NLlaA~idn~ 163 (564)
.|+ .||-+..||..
T Consensus 58 ~I~--~nL~a~eiD~~ 71 (322)
T COG0003 58 KVG--PNLDALELDPE 71 (322)
T ss_pred hcC--CCCceeeecHH
Confidence 666 77766666643
No 86
>PRK05480 uridine/cytidine kinase; Provisional
Probab=84.64 E-value=1.2 Score=42.59 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
++.+|.++| |.|.||||++.-|.+.|
T Consensus 5 ~~~iI~I~G----~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAG----GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 467899998 78999999987777655
No 87
>PRK14974 cell division protein FtsY; Provisional
Probab=84.60 E-value=1.2 Score=47.27 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.+.+.|+++| |-|.|||||..-|+..|. ..|+++.+
T Consensus 138 ~~~~vi~~~G----~~GvGKTTtiakLA~~l~-~~g~~V~l 173 (336)
T PRK14974 138 GKPVVIVFVG----VNGTGKTTTIAKLAYYLK-KNGFSVVI 173 (336)
T ss_pred CCCeEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 3467899998 569999999999999994 66766543
No 88
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=84.51 E-value=0.87 Score=45.01 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iN 139 (564)
|-|.||||++--|.+.|. ... +++...++|||++.
T Consensus 7 ~sGSGKTTla~~L~~~l~-~~~-----------------------~~~~v~vi~~D~f~ 41 (220)
T cd02025 7 SVAVGKSTTARVLQALLS-RWP-----------------------DHPNVELITTDGFL 41 (220)
T ss_pred CCCCCHHHHHHHHHHHHh-hcC-----------------------CCCcEEEEecCccc
Confidence 679999999999988884 321 24678899999883
No 89
>PRK08233 hypothetical protein; Provisional
Probab=84.18 E-value=0.75 Score=42.19 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+++|.|+| +| |.||||++-.|++.|
T Consensus 3 ~~iI~I~G---~~-GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAA---VS-GGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEEC---CC-CCCHHHHHHHHHhhC
Confidence 56788887 33 999999999888877
No 90
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=83.93 E-value=0.76 Score=45.29 Aligned_cols=33 Identities=36% Similarity=0.327 Sum_probs=26.1
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
|++|-.|.|||++|.||.++| .+.|.++. .+|-
T Consensus 7 It~t~t~vGKT~vt~~L~~~l-~~~g~~v~-~~KP 39 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQAL-ASQGKTVA-GYKP 39 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEE-EECc
Confidence 346788999999999999999 58788754 3553
No 91
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=83.63 E-value=0.67 Score=51.23 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
--|-.|.||||+|+||..||. +.|.+
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~-~rg~~ 31 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALR-RRGLK 31 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHH-hcCCc
Confidence 357889999999999999994 77776
No 92
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.43 E-value=1.4 Score=45.06 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+++|++.| | -|.|||||...|+..+.
T Consensus 193 ~~~vi~~vG--p--tGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVG--P--TGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEEC--C--CCCCHHHHHHHHHHHHH
Confidence 577888886 4 59999999999999984
No 93
>PRK13976 thymidylate kinase; Provisional
Probab=83.28 E-value=1.4 Score=43.46 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=30.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
++|.+-|| -|.||||.+--|.+.|..+.|...+...|||+
T Consensus 1 ~fIv~EGi----DGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 1 MFITFEGI----DGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 46666666 59999999999999995333654566789997
No 94
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=83.19 E-value=30 Score=31.27 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred chHHHHHHHHhhcCCCCeEEeecccccccc---cccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCcccc
Q 008480 348 SSIVADKIALKLVGPGGFVVTEAGFGADIG---AEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (564)
Q Consensus 348 nSiiAtk~ALklag~~dyvVTEAGFGaDlG---aEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l 424 (564)
.+.++.++.-... ++-|+-.|++-+.- .+.+-. -....+||.|||-. |.... .
T Consensus 23 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~l~~---~~~~~~pd~v~i~~---------G~ND~---------~ 78 (177)
T cd01822 23 PALLQKRLDARGI---DVTVINAGVSGDTTAGGLARLPA---LLAQHKPDLVILEL---------GGNDG---------L 78 (177)
T ss_pred HHHHHHHHHHhCC---CeEEEecCcCCcccHHHHHHHHH---HHHhcCCCEEEEec---------cCccc---------c
Confidence 3455555553333 67777777764432 232221 12346899887754 43321 1
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCC-----cHHHHHHHHHHHHHcCCC
Q 008480 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATD-----SKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 425 ~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tD-----T~aEi~~v~~~~~~~G~~ 481 (564)
...+.+..++. |++=|+.+++.+.++|+.--..+.. .+.=-+.+++.|++.++.
T Consensus 79 ~~~~~~~~~~~---l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 79 RGIPPDQTRAN---LRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred cCCCHHHHHHH---HHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc
Confidence 12345555554 4455666677788877652112221 122235667889888886
No 95
>PRK10867 signal recognition particle protein; Provisional
Probab=82.98 E-value=1.4 Score=48.42 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=28.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCceEEEe
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCL 109 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l-gk~~~~~l 109 (564)
.++|++++ |.|+|||||+.-|+-.|. .. |+++.+.=
T Consensus 100 p~vI~~vG----~~GsGKTTtaakLA~~l~-~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVG----LQGAGKTTTAGKLAKYLK-KKKKKKVLLVA 136 (433)
T ss_pred CEEEEEEC----CCCCcHHHHHHHHHHHHH-HhcCCcEEEEE
Confidence 46788876 789999999999999994 66 88776543
No 96
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=82.83 E-value=1.1 Score=38.02 Aligned_cols=32 Identities=38% Similarity=0.392 Sum_probs=25.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
--|.||||++..|++.|. +.|+++.+.==.|+
T Consensus 8 kgG~Gkst~~~~la~~~~-~~~~~vl~~d~d~~ 39 (104)
T cd02042 8 KGGVGKTTTAVNLAAALA-RRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCcCHHHHHHHHHHHHH-hCCCcEEEEeCCCC
Confidence 359999999999999994 78888766645555
No 97
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.58 E-value=1.2 Score=49.51 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=32.5
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 60 l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.++-.++.| +||||| |-|+|||||.-.+.+.++ .-+ ..++++=.|
T Consensus 234 l~~~~~~~~G-lilitG----ptGSGKTTtL~a~L~~l~-~~~-~~iiTiEDp 279 (486)
T TIGR02533 234 FERLIRRPHG-IILVTG----PTGSGKTTTLYAALSRLN-TPE-RNILTVEDP 279 (486)
T ss_pred HHHHHhcCCC-EEEEEc----CCCCCHHHHHHHHHhccC-CCC-CcEEEEcCC
Confidence 3344334556 999998 569999999988878784 444 346777665
No 98
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.29 E-value=1.2 Score=41.28 Aligned_cols=28 Identities=36% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEe
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~l 109 (564)
|.|+||||++.-|+..+. ..|++..++=
T Consensus 8 ~~G~GKTt~~~~la~~~~-~~g~~v~~i~ 35 (173)
T cd03115 8 LQGVGKTTTAAKLALYLK-KKGKKVLLVA 35 (173)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEE
Confidence 789999999999999994 6687765543
No 99
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=81.95 E-value=14 Score=37.28 Aligned_cols=89 Identities=18% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHhhcCCcEEEEecccCCCcHH-HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 443 IANTKAYGANVVVAVNMFATDSKA-ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~a-Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
.+.+++++.|+++++|+-..-..+ ..+.+.+++...+...+ -..=|+-|+|-.+|.+.+.+.+...+.-|..=|-.+
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v--~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDI--VPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCce--EEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 444566899999999996542233 34455566655444212 233367789999999999888743221122223344
Q ss_pred CCHHHHHHHHHh
Q 008480 522 VSIKEKIDTIAR 533 (564)
Q Consensus 522 ~~I~eKIetIA~ 533 (564)
.|.+.-+..|.|
T Consensus 178 ~~~~~~~~e~ir 189 (270)
T TIGR00436 178 QPDRFKISEIIR 189 (270)
T ss_pred CCHHHHHHHHHH
Confidence 566666666666
No 100
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=81.92 E-value=1.4 Score=44.11 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=26.9
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
++.-..=|.|||||++-|+.+| ++.|+++.+.==
T Consensus 5 ~v~n~KGGvGKTT~a~nLA~~l-a~~G~~VlliD~ 38 (231)
T PRK13849 5 TFCSFKGGAGKTTALMGLCAAL-ASDGKRVALFEA 38 (231)
T ss_pred EEECCCCCccHHHHHHHHHHHH-HhCCCcEEEEeC
Confidence 3445678999999999999999 588988765433
No 101
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=81.60 E-value=6.7 Score=44.50 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCc-EEEEecccCCCcHHHHHH----HHHHHHHc----CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 439 LARHIANTKAYGAN-VVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAIN~F~tDT~aEi~~----v~~~~~~~----G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
...|+..++.+|+| +||++|+-..-++++++. ++++++.. +++ ++.+. +.=|+|-.+|-+.+.+.++
T Consensus 91 T~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~-ii~vS--A~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 91 TGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK-IFKTS--AKTGQGIGELKKELKNLLE 166 (581)
T ss_pred HHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEe--CCCCCCchhHHHHHHHHHH
Confidence 34677778889999 999999987655665543 44445443 344 44333 4556888888877776665
No 102
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.40 E-value=1.8 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
..|++|++++ || |.|||||...|+..+. ..|+++.
T Consensus 204 ~~~~ii~lvG--pt--GvGKTTt~akLA~~l~-~~g~~V~ 238 (407)
T PRK12726 204 SNHRIISLIG--QT--GVGKTTTLVKLGWQLL-KQNRTVG 238 (407)
T ss_pred cCCeEEEEEC--CC--CCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3588999988 55 9999999999998873 5576643
No 103
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.23 E-value=1 Score=44.33 Aligned_cols=33 Identities=39% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
..=|.||||||+-|+-+|..+-|+++.+.==.|
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 467999999999999999424456765443333
No 104
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=80.60 E-value=2.1 Score=44.96 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.+.+|+|+| |-|.|||||.-.|...++ ......++++-+|
T Consensus 121 ~~g~ili~G----~tGSGKTT~l~al~~~i~-~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTG----PTGSGKSTTLASMIDYIN-KNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEEC----CCCCCHHHHHHHHHHhhC-cCCCCEEEEEcCC
Confidence 467999998 569999999999988884 4445568888877
No 105
>PRK00131 aroK shikimate kinase; Reviewed
Probab=80.50 E-value=1.5 Score=39.61 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++++.|+++|+ .|.||||++..|++.|+
T Consensus 2 ~~~~~i~l~G~----~GsGKstla~~La~~l~ 29 (175)
T PRK00131 2 LKGPNIVLIGF----MGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCeEEEEcC----CCCCHHHHHHHHHHHhC
Confidence 35778999984 79999999999998884
No 106
>PRK07933 thymidylate kinase; Validated
Probab=80.31 E-value=2.7 Score=41.32 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=31.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
++|.+-|+ -|.||||.+--|.+.|. ..|.+ +...|+|..|
T Consensus 1 ~~IviEG~----dGsGKST~~~~L~~~L~-~~g~~-v~~~~~P~~~ 40 (213)
T PRK07933 1 MLIAIEGV----DGAGKRTLTEALRAALE-ARGRS-VATLAFPRYG 40 (213)
T ss_pred CEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEecCCCC
Confidence 36666665 69999999999999995 66876 6778999644
No 107
>PRK00889 adenylylsulfate kinase; Provisional
Probab=79.53 E-value=2.5 Score=39.29 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
++|++|++++. .|.||||++.-|++.|. .-|.+.
T Consensus 2 ~~g~~i~~~G~----~GsGKST~a~~la~~l~-~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGL----SGAGKTTIARALAEKLR-EAGYPV 35 (175)
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE
Confidence 56999999985 69999999999999994 556543
No 108
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=79.34 E-value=6.5 Score=44.46 Aligned_cols=102 Identities=26% Similarity=0.360 Sum_probs=67.3
Q ss_pred cccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 008480 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (564)
Q Consensus 376 lGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVV 455 (564)
-|=|=|-+.-.|-+.+. |+||||.-+ .+|=.|+ -+|| |+.+|.+|+|.||
T Consensus 63 PGHeAFt~mRaRGa~vt-DIaILVVa~----dDGv~pQ--------------TiEA-----------I~hak~a~vP~iV 112 (509)
T COG0532 63 PGHEAFTAMRARGASVT-DIAILVVAA----DDGVMPQ--------------TIEA-----------INHAKAAGVPIVV 112 (509)
T ss_pred CcHHHHHHHHhcCCccc-cEEEEEEEc----cCCcchh--------------HHHH-----------HHHHHHCCCCEEE
Confidence 36667777777766666 666666633 2322222 1233 6778899999999
Q ss_pred EecccCCCcHHHHHHHHHHHHHcCCC------eEEEcCccccCccchHHHHHHHHHHhh
Q 008480 456 AVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 456 AIN~F~tDT~aEi~~v~~~~~~~G~~------~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
|+|+-.-- ++..+.++....+.|+. ++.+-.+=|+.|+|--+|-..++-.++
T Consensus 113 AiNKiDk~-~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 113 AINKIDKP-EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEecccCC-CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 99986443 44445555555556652 245556668999999999988877665
No 109
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.15 E-value=2.3 Score=46.83 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=28.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
..+|++++ |-|+|||||+.-|+..|. ..|+++.++
T Consensus 95 p~vI~lvG----~~GsGKTTtaakLA~~L~-~~g~kV~lV 129 (437)
T PRK00771 95 PQTIMLVG----LQGSGKTTTAAKLARYFK-KKGLKVGLV 129 (437)
T ss_pred CeEEEEEC----CCCCcHHHHHHHHHHHHH-HcCCeEEEe
Confidence 45888887 689999999999999994 778776654
No 110
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=79.13 E-value=15 Score=33.44 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=43.5
Q ss_pred CCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCC-----Cc
Q 008480 390 GLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT-----DS 464 (564)
Q Consensus 390 gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~t-----DT 464 (564)
..+||.|||-. |..... ...+.+...+++.+|.+.+... .-+.+||+ +.-.+. ..
T Consensus 46 ~~~pd~vvl~~---------G~ND~~---------~~~~~~~~~~~l~~li~~~~~~-~~~~~vi~-~~~~p~~~~~~~~ 105 (169)
T cd01828 46 ALQPKAIFIMI---------GINDLA---------QGTSDEDIVANYRTILEKLRKH-FPNIKIVV-QSILPVGELKSIP 105 (169)
T ss_pred ccCCCEEEEEe---------eccCCC---------CCCCHHHHHHHHHHHHHHHHHH-CCCCeEEE-EecCCcCccCcCC
Confidence 56899998866 443221 1245677888777776655543 25777655 433333 23
Q ss_pred HHH----HHHHHHHHHHcCCC
Q 008480 465 KAE----LNAVRNAAMAAGAF 481 (564)
Q Consensus 465 ~aE----i~~v~~~~~~~G~~ 481 (564)
.+. -+.+++.|++.|+.
T Consensus 106 ~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 106 NEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 333 34578888988885
No 111
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=79.08 E-value=1.4 Score=48.15 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=25.9
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
|+-|..|.||||+|.||+++| ++.|.++...
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L-~~~G~~V~~f 34 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKAL-SRRKLRVQPF 34 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHH-HHCCCceeEE
Confidence 345789999999999999999 5889986544
No 112
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=78.98 E-value=13 Score=34.94 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=45.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHH-----HHcCCCe---EEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAA-----MAAGAFD---AVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~-----~~~G~~~---~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
....|++-++.+++|+||+||+-..- +++++.+.+.. +..+... +-+--.=+.=|.|-.+|-+.+++.+
T Consensus 110 ~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 110 QTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998665 66665554433 3333321 2222234556778888988888764
No 113
>PTZ00301 uridine kinase; Provisional
Probab=78.65 E-value=1.9 Score=42.73 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~ 100 (564)
++|-|+| |.|+||||++-.|.+.|+.+
T Consensus 4 ~iIgIaG----~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISG----ASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEEC----CCcCCHHHHHHHHHHHHHhh
Confidence 4777777 57999999999999998533
No 114
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=78.20 E-value=2.2 Score=46.74 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=45.3
Q ss_pred cccccccccccCCCC-cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHH---hhHHHHHHHHhhcCCc-
Q 008480 378 AEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN- 452 (564)
Q Consensus 378 aEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~---~NL~kHIeNi~~fGvP- 452 (564)
-++| +++..+|+. .|++|||.-... |+ .|.|+ ....+|+..++.+|+|
T Consensus 95 h~~f--~~~~~~g~~~aD~ailVVda~~-----G~--------------------~e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 95 HRDF--IKNMITGTSQADVAILVVASTA-----GE--------------------FEAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred hHHH--HHHHHHhhhhcCEEEEEEEcCC-----Cc--------------------eecccCCCccHHHHHHHHHHcCCCe
Confidence 3455 366677766 889988875321 21 12222 2578999999999999
Q ss_pred EEEEecccCCC----cHHHHHHHHHHH
Q 008480 453 VVVAVNMFATD----SKAELNAVRNAA 475 (564)
Q Consensus 453 vVVAIN~F~tD----T~aEi~~v~~~~ 475 (564)
+||+||+...+ +++.++.+.+..
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i 174 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEV 174 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHH
Confidence 46999998732 345555544443
No 115
>PRK00089 era GTPase Era; Reviewed
Probab=78.02 E-value=28 Score=35.08 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCcEEEEecccCCC-cHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 441 RHIANTKAYGANVVVAVNMFATD-SKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tD-T~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
..++.++..++|+++++|+..-- +.+++. .+.++++..+...+..+. ++=|+|-.+|-+.+.+.+... + ++|
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS--A~~~~gv~~L~~~L~~~l~~~--~--~~y 177 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS--ALKGDNVDELLDVIAKYLPEG--P--PYY 177 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec--CCCCCCHHHHHHHHHHhCCCC--C--CCC
Confidence 44555666789999999998664 445554 444444444543333222 566789899988888876432 2 466
Q ss_pred CCC----CCHHHHHHHHHh
Q 008480 519 PLD----VSIKEKIDTIAR 533 (564)
Q Consensus 519 d~~----~~I~eKIetIA~ 533 (564)
+.+ .+.+.-+..|-|
T Consensus 178 ~~~~~td~~~r~~~~EiiR 196 (292)
T PRK00089 178 PEDQITDRPERFLAAEIIR 196 (292)
T ss_pred CCCCCCCCCHHHHHHHHHH
Confidence 655 455544444444
No 116
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=77.59 E-value=2.8 Score=41.39 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=30.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+|=.|-+|+.+ |+||||++..|.|+|. ..|+-+.
T Consensus 29 qkGcviWiTGLS----gSGKStlACaL~q~L~-qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLS----GSGKSTLACALSQALL-QRGKLTY 63 (207)
T ss_pred CCCcEEEEeccC----CCCchhHHHHHHHHHH-hcCceEE
Confidence 569999999985 8999999999999995 6687654
No 117
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=77.03 E-value=2 Score=39.16 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=22.4
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
|-.|.||||+|.||...| ++.|.++. ++|
T Consensus 6 ~~~~~Gkt~~~~~l~~~l-~~~~~~v~-~~k 34 (134)
T cd03109 6 TGTDIGKTVATAILARAL-KEKGYRVA-PLK 34 (134)
T ss_pred CCCCcCHHHHHHHHHHHH-HHCCCeEE-EEe
Confidence 345699999999999999 57787754 443
No 118
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=76.96 E-value=3.3 Score=39.97 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|+|++ |-|.|||||.-.|...+. .-....++++.+|-
T Consensus 3 lilI~G----ptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTG----PTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPI 40 (198)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCc
Confidence 677776 679999999998888884 33345677787763
No 119
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=76.92 E-value=15 Score=32.50 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=37.9
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+||++|+..-..+. ..+...+++++.++. +..+. ++-|+|-.++-+.+++.+
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETS--AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEee--CCCCCCHHHHHHHHHHhh
Confidence 589999999997654332 233457778877875 44333 455788888877776543
No 120
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=76.90 E-value=2 Score=43.18 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCC--CCc
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLK 515 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~--~fk 515 (564)
++.-....+-++++|.|+++|+..-=.+. .+...+|..+.......+... -..|.+++.++++.-.. .|.
T Consensus 144 ~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~-------~~~l~~~i~~~l~~~~~~~~f~ 215 (238)
T PF03029_consen 144 SLLLSLSIMLRLELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESD-------YKKLNEEIAELLDDFGLVIRFI 215 (238)
T ss_dssp HHHHHHHHHHHHTSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT--------HHHHHHHHHHHCCCCSSS---E
T ss_pred HHHHHHHHHhhCCCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHH-------HHHHHHHHHHHHhhcCCCceEE
Confidence 44555566667999999999998654333 555555555332211111111 78889999999875322 355
Q ss_pred ccCCC-CCCHHHHHHHH
Q 008480 516 FLYPL-DVSIKEKIDTI 531 (564)
Q Consensus 516 ~LYd~-~~~I~eKIetI 531 (564)
|+--. ..++.+=+..|
T Consensus 216 pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 216 PLSSKDGEGMEELLAAI 232 (238)
T ss_dssp E-BTTTTTTHHHHHHHH
T ss_pred EEECCChHHHHHHHHHH
Confidence 55543 35555433333
No 121
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.83 E-value=3.7 Score=39.71 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=27.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+.++++|+| |+|.||||+...+.+++. .-|++.+++
T Consensus 17 ~~~~~~l~G----~aGtGKT~~l~~~~~~~~-~~g~~v~~~ 52 (196)
T PF13604_consen 17 GDRVSVLQG----PAGTGKTTLLKALAEALE-AAGKRVIGL 52 (196)
T ss_dssp TCSEEEEEE----STTSTHHHHHHHHHHHHH-HTT--EEEE
T ss_pred CCeEEEEEE----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 356899988 699999999999999994 546555443
No 122
>PRK06696 uridine kinase; Validated
Probab=76.60 E-value=2.8 Score=40.95 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=23.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lg 102 (564)
-.+|.|+| +.|.||||++--|++.|+ ..|
T Consensus 22 ~~iI~I~G----~sgsGKSTlA~~L~~~l~-~~g 50 (223)
T PRK06696 22 PLRVAIDG----ITASGKTTFADELAEEIK-KRG 50 (223)
T ss_pred ceEEEEEC----CCCCCHHHHHHHHHHHHH-HcC
Confidence 34888888 789999999999999995 434
No 123
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=76.57 E-value=1.9 Score=47.42 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|-.|.||||+|.||.++| .+.|.++.
T Consensus 7 ~~~~s~~GKT~vt~gl~~~l-~~~g~~v~ 34 (433)
T PRK13896 7 GGTSSGVGKTVATLATIRAL-EDAGYAVQ 34 (433)
T ss_pred EeCCCCCCHHHHHHHHHHHH-HHCCCeeE
Confidence 35678999999999999999 58898763
No 124
>PRK03846 adenylylsulfate kinase; Provisional
Probab=76.48 E-value=3.3 Score=39.65 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|++|.+||.+ |.||||++--|.+.|. ..|..++
T Consensus 22 ~~~~~i~i~G~~----GsGKSTla~~l~~~l~-~~~~~~~ 56 (198)
T PRK03846 22 HKGVVLWFTGLS----GSGKSTVAGALEEALH-ELGVSTY 56 (198)
T ss_pred CCCEEEEEECCC----CCCHHHHHHHHHHHHH-hCCCCEE
Confidence 568999999874 9999999999988884 4565443
No 125
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=76.40 E-value=3.2 Score=37.74 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
-.-|+||||++++|+..+. ..|+++.+.=-.|
T Consensus 7 ~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~ 38 (139)
T cd02038 7 GKGGVGKTNISANLALALA-KLGKRVLLLDADL 38 (139)
T ss_pred CCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC
Confidence 3789999999999999994 7798877765554
No 126
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=76.22 E-value=3.2 Score=39.88 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.|.+++|+| |.|.||||++.-++..+. ..|.+++.
T Consensus 17 ~~g~i~~i~G----~~GsGKT~l~~~~a~~~~-~~g~~v~y 52 (218)
T cd01394 17 ERGTVTQVYG----PPGTGKTNIAIQLAVETA-GQGKKVAY 52 (218)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 6799999999 789999999999988873 55666543
No 127
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=76.14 E-value=16 Score=31.98 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=35.8
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.++|+||+.|+..--. ....+.+.++++..+.. +..+. ++-|+|-.+|=+.+++.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETS--AKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEec--CCCCCCHHHHHHHHHHH
Confidence 5899999999865422 22234556777777775 43332 67778877776666543
No 128
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.04 E-value=3.7 Score=43.94 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC-CceEEEecCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKVVTCLRQPSQ 114 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lg-k~~~~~lRePSl 114 (564)
.+.+|+||| |-|.|||||.-.|.+-++...+ ...++++-.|.-
T Consensus 133 ~~glilI~G----pTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITG----ATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEEC----CCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 467999999 5699999999999888853333 346788888764
No 129
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=75.91 E-value=3.1 Score=39.94 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+|..|.+|+. .|.||||++-.|.+-|. ..|.++..-
T Consensus 1 ~g~vIwltGl----sGsGKtTlA~~L~~~L~-~~g~~~~~L 36 (156)
T PF01583_consen 1 KGFVIWLTGL----SGSGKTTLARALERRLF-ARGIKVYLL 36 (156)
T ss_dssp S-EEEEEESS----TTSSHHHHHHHHHHHHH-HTTS-EEEE
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHHH-HcCCcEEEe
Confidence 3678999987 59999999999999994 779887653
No 130
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=75.88 E-value=8.6 Score=39.84 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=76.3
Q ss_pred ccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEE---EeehhHHHhcCCCCCcc
Q 008480 339 PFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVI---VATIRALKMHGGGPQVV 415 (564)
Q Consensus 339 PFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVl---VaTvRALK~HGG~~~~~ 415 (564)
|+.+..-++--.--+++.-|..---||+||-..|-.+. .++|++ +||..|+..-.+.= +.+.+.+.+.-.+
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~---- 211 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKVDAGADFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAKW---- 211 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHhc----
Confidence 66544433322223466666532337999999998876 677887 79999987544332 3344433332223
Q ss_pred CCCCCcccccc------ccHHH-HHHHHhhHHHHHHHHhhcCCcEE--EEecccCCCcHHHHHHHHHHHHHcCC
Q 008480 416 AGKPLDHAYLN------ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (564)
Q Consensus 416 ~g~PLp~~l~~------eNl~a-Le~G~~NL~kHIeNi~~fGvPvV--VAIN~F~tDT~aEi~~v~~~~~~~G~ 480 (564)
+|..+|+++.+ .+-++ -+.|+.--...|+.+..+|+|-| ..+|++ +.+.+.|+.+|.
T Consensus 212 ~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~--------~~~~~il~~l~~ 277 (281)
T TIGR00677 212 SKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLE--------KAALMILERLGL 277 (281)
T ss_pred CCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCch--------HHHHHHHHHcCC
Confidence 34455665544 23333 35788877888888888887743 455554 455666666664
No 131
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=75.70 E-value=4.2 Score=47.10 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=59.1
Q ss_pred hHHHHHHH---HhhcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCC
Q 008480 438 NLARHIAN---TKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (564)
Q Consensus 438 NL~kHIeN---i~~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~ 512 (564)
||+|++-- +.++|+|+|+|+|...--... +|+ +.+.-+.+|++ ++ ..-|+=|+|-.+|-+++++..+.+..
T Consensus 93 nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvP-Vv--~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 93 NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVP-VV--PTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCC-EE--EEEeecCCCHHHHHHHHHHhcccccc
Confidence 66666653 556999999999986321110 222 23455679998 43 23366678899999999998875433
Q ss_pred CCcccCCCCCCHHHHHHHHH
Q 008480 513 PLKFLYPLDVSIKEKIDTIA 532 (564)
Q Consensus 513 ~fk~LYd~~~~I~eKIetIA 532 (564)
++.+-|+ ..+++.|+.++
T Consensus 169 ~~~~~y~--~~ie~~i~~l~ 186 (653)
T COG0370 169 PREVDYG--EEIEEEIKELE 186 (653)
T ss_pred ccccccc--hHHHHHHHHHH
Confidence 4556664 47888887775
No 132
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=75.64 E-value=2.4 Score=40.75 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.6
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|.|.+|.++| |.|.||||++--|.+.|
T Consensus 3 ~~~g~vi~I~G----~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGG----GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 47799999999 78999999776665554
No 133
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=75.60 E-value=3.4 Score=39.34 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
|.|.+++|+| |.|.||||.+.-++-... +.|.+
T Consensus 10 ~~g~i~~i~G----~~GsGKT~l~~~~~~~~~-~~g~~ 42 (209)
T TIGR02237 10 ERGTITQIYG----PPGSGKTNICMILAVNAA-RQGKK 42 (209)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCe
Confidence 6799999999 789999999987766652 33433
No 134
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=75.54 E-value=8.4 Score=35.04 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhc----CCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAY----GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~f----GvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++...++.++.+ +.|++++.|+..--.+. ..+.+.++|++.+++ .-+..++=|+|-.++-+.+++.+
T Consensus 104 ~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 104 NVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP---YFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe---EEEEeCCCCCCHHHHHHHHHHHH
Confidence 444445555442 68999999987643221 224467888888875 34778899999988888777644
No 135
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=74.32 E-value=14 Score=39.61 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhcCCcEE-EEecccCCCcHHHH-----HHHHHHHHHcC
Q 008480 438 NLARHIANTKAYGANVV-VAVNMFATDSKAEL-----NAVRNAAMAAG 479 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvV-VAIN~F~tDT~aEi-----~~v~~~~~~~G 479 (564)
.-.+|+..++.+|+|.+ |++|+..--+++|. +.+++++++.+
T Consensus 115 qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 34589999999999976 68999875333332 24666777666
No 136
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=73.84 E-value=2.3 Score=43.41 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 79 PTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
-+.=|.||||+.+.|+.+| .+.|+++.+
T Consensus 8 s~KGGaGKTT~~~~LAs~l-a~~G~~V~l 35 (231)
T PF07015_consen 8 SSKGGAGKTTAAMALASEL-AARGARVAL 35 (231)
T ss_pred cCCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 3577999999999999999 577887653
No 137
>PLN00043 elongation factor 1-alpha; Provisional
Probab=73.80 E-value=4.8 Score=44.22 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=49.0
Q ss_pred ccccccccccccCCCC-cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHH---hhHHHHHHHHhhcCCc
Q 008480 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 452 (564)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~---~NL~kHIeNi~~fGvP 452 (564)
|-|+|+ +...+|+. +|++|||.-..- |.. +.|+ ....+|+.-++.+|+|
T Consensus 94 Gh~df~--~~~~~g~~~aD~aIlVVda~~----G~~---------------------e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 94 GHRDFI--KNMITGTSQADCAVLIIDSTT----GGF---------------------EAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred CHHHHH--HHHHhhhhhccEEEEEEEccc----Cce---------------------ecccCCCchHHHHHHHHHHcCCC
Confidence 345665 34455555 899999986542 211 1122 2567899999999996
Q ss_pred -EEEEecccCCCc----HHH----HHHHHHHHHHcCC
Q 008480 453 -VVVAVNMFATDS----KAE----LNAVRNAAMAAGA 480 (564)
Q Consensus 453 -vVVAIN~F~tDT----~aE----i~~v~~~~~~~G~ 480 (564)
.||++|+-...+ ++. ++.+++++++.|.
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 589999975321 111 4557777887784
No 138
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=73.61 E-value=27 Score=34.87 Aligned_cols=98 Identities=9% Similarity=0.084 Sum_probs=61.2
Q ss_pred ccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecccCC-CcHHH----HHHHHH---HHHHcCCCeEEEcCccccCc
Q 008480 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFAT-DSKAE----LNAVRN---AAMAAGAFDAVVCSHHAHGG 493 (564)
Q Consensus 423 ~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVA-IN~F~t-DT~aE----i~~v~~---~~~~~G~~~~~vs~~wakGG 493 (564)
.+..++-+.-++.+..+++.|+-.+.+|.+.||. ...... ++++. ++.+++ .+++.|+. +++-+++....
T Consensus 71 ~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~ 149 (279)
T cd00019 71 NLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGN 149 (279)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCC
Confidence 3445666788999999999999999999998775 222222 22322 233444 44567886 77777765531
Q ss_pred --cchHHHHHHHHHHhhcCCCCCcccCCCCC
Q 008480 494 --KGAVDLGIAVQRACENVTQPLKFLYPLDV 522 (564)
Q Consensus 494 --eGa~eLA~~Vvea~e~~~~~fk~LYd~~~ 522 (564)
-...+-+.++++.+.+ +.++..+||...
T Consensus 150 ~~~~t~~~~~~li~~v~~-~~~~g~~lD~~h 179 (279)
T cd00019 150 EIGSSFEELKEIIDLIKE-KPRVGVCIDTCH 179 (279)
T ss_pred CCCCCHHHHHHHHHhcCC-CCCeEEEEEhhh
Confidence 2344556677777651 235776666543
No 139
>PRK15494 era GTPase Era; Provisional
Probab=73.14 E-value=26 Score=36.96 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
.++.++.++.|+|+++|+..-.. ++++.+.+++.+.+.. ..+-..=|+=|+|-.+|-+.+.+.+..+ .++|+.+
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~-~~~~~~~~~l~~~~~~-~~i~~iSAktg~gv~eL~~~L~~~l~~~----~~~~~~~ 225 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIES-KYLNDIKAFLTENHPD-SLLFPISALSGKNIDGLLEYITSKAKIS----PWLYAED 225 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCcc-ccHHHHHHHHHhcCCC-cEEEEEeccCccCHHHHHHHHHHhCCCC----CCCCCCC
Confidence 35556677899999999976533 2455666777665532 1122333677889888888887766432 3566554
Q ss_pred ----CCHHHHHHHHHh--HhC
Q 008480 522 ----VSIKEKIDTIAR--SYG 536 (564)
Q Consensus 522 ----~~I~eKIetIA~--IYG 536 (564)
.|.+.-+..|-| +|.
T Consensus 226 ~~td~~~~~~~~eiiRe~~~~ 246 (339)
T PRK15494 226 DITDLPMRFIAAEITREQLFL 246 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 577777766666 544
No 140
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=72.77 E-value=28 Score=37.79 Aligned_cols=68 Identities=15% Similarity=-0.012 Sum_probs=44.1
Q ss_pred cCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 449 YGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
.+.|+||++|+-.--..+|+. .+.+++++.+.. ..+...-++=|+|-.+|.+.+.+.+.+. .++|+.+
T Consensus 274 ~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~~----~~~~~~~ 342 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWE-GPVYLISAASGLGVKELCWDLMTFIEEN----PREEAEE 342 (390)
T ss_pred cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhhC----cccCCcc
Confidence 468999999998765555553 445555554531 0122344566899999999999888542 4556644
No 141
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=72.39 E-value=3.1 Score=45.02 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=54.0
Q ss_pred ccccCceeeecc-hhhhhccC--CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccccc
Q 008480 46 DLYGKYKAKVLL-SVLDELEG--SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122 (564)
Q Consensus 46 ~~YG~~kAKi~~-~~l~~~~~--~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKG 122 (564)
+.||..+++-.+ +.+..... ....|+++.+| |-|.||||++--|+.+|+ +. .|+ .-||.|-+||
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~G----PPGsGKStla~~La~~l~-~y-------s~t-~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLG----PVGGGKSSLVECLKRGLE-EY-------SKT-PEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEC----CCCCCHHHHHHHHHHHHh-hh-------ccc-ccCceEEEEe
Confidence 578888886554 33333221 23357888887 789999999999999996 32 233 4689999988
Q ss_pred CCCCCCceeeecCcccccccc
Q 008480 123 GAAGGGYSQVIPMDEFNLHLT 143 (564)
Q Consensus 123 GAaGGGysQv~Pme~iNLHfT 143 (564)
+. ..-||-|-=||+-
T Consensus 119 ~~------~~sp~~e~Pl~l~ 133 (361)
T smart00763 119 NG------EESPMHEDPLHLF 133 (361)
T ss_pred cC------CCCCCccCCcccC
Confidence 65 5567777777653
No 142
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=72.39 E-value=3 Score=38.76 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++|+|++ |.|.||||++-.|+..++
T Consensus 1 ~~~~~i~G----~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVG----PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 56788888 679999999998887773
No 143
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=72.35 E-value=2.2 Score=46.50 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=26.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
-|+||+ |..|.||||+|.||+++| ++.|.++..
T Consensus 5 ~i~I~g---t~s~~GKT~it~~L~~~L-~~~G~~V~~ 37 (451)
T PRK01077 5 ALVIAA---PASGSGKTTVTLGLMRAL-RRRGLRVQP 37 (451)
T ss_pred EEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCCcce
Confidence 366665 668999999999999999 588987554
No 144
>PRK00784 cobyric acid synthase; Provisional
Probab=71.99 E-value=2.5 Score=46.60 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=26.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
-|+||| |..|.||||+|.||+++| ++.|.++.
T Consensus 4 ~ifItG---T~T~vGKT~vt~~L~~~l-~~~G~~v~ 35 (488)
T PRK00784 4 ALMVQG---TASDAGKSTLVAGLCRIL-ARRGYRVA 35 (488)
T ss_pred eEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEe
Confidence 366665 668999999999999999 57797755
No 145
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=71.96 E-value=20 Score=31.78 Aligned_cols=53 Identities=9% Similarity=-0.125 Sum_probs=33.4
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
.++|+|++.|+..-..+.+ .+...+++++.|.+ +..+... =|+|-.+|-+.+.
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~--~~~~v~~l~~~l~ 159 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVK--DDFNVTELFEYLA 159 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECC--CCCCHHHHHHHHH
Confidence 4899999999987543333 24456777888886 5544443 3456555554443
No 146
>PRK15452 putative protease; Provisional
Probab=71.66 E-value=17 Score=40.26 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=60.8
Q ss_pred CcceEEEEeehhHHHhc--CCCCCccCCCCCccc-cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHH
Q 008480 392 TPQCAVIVATIRALKMH--GGGPQVVAGKPLDHA-YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAEL 468 (564)
Q Consensus 392 ~P~avVlVaTvRALK~H--GG~~~~~~g~PLp~~-l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi 468 (564)
+|...|-|-|.-+||.- .|+..+-.|.+--.. ....|. ....|.+.++-.++.|+.+.|++|.++. +.|+
T Consensus 3 ~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f-----~~edl~eav~~ah~~g~kvyvt~n~i~~--e~el 75 (443)
T PRK15452 3 KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEF-----NHENLALGINEAHALGKKFYVVVNIAPH--NAKL 75 (443)
T ss_pred ccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCC-----CHHHHHHHHHHHHHcCCEEEEEecCcCC--HHHH
Confidence 37777777787777743 566655554311000 000111 1124778888899999999999999988 4666
Q ss_pred HHHHHHHH---HcCCCeEEEcCccccCccchHHHHHH
Q 008480 469 NAVRNAAM---AAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 469 ~~v~~~~~---~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
+.+.++.+ +.|+..+++++ -|.+.++++
T Consensus 76 ~~~~~~l~~l~~~gvDgvIV~d------~G~l~~~ke 106 (443)
T PRK15452 76 KTFIRDLEPVIAMKPDALIMSD------PGLIMMVRE 106 (443)
T ss_pred HHHHHHHHHHHhCCCCEEEEcC------HHHHHHHHH
Confidence 66665544 78887555554 355666654
No 147
>PRK00098 GTPase RsgA; Reviewed
Probab=71.17 E-value=37 Score=35.15 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCcEEEEecccCC-CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHH
Q 008480 439 LARHIANTKAYGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~t-DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
+.+-+..++..++|+|+++|+-.- +..++++...+++++.|.. +.... ++=|+|-.+|.+.
T Consensus 100 idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vS--A~~g~gi~~L~~~ 161 (298)
T PRK00098 100 LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELS--AKEGEGLDELKPL 161 (298)
T ss_pred HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEe--CCCCccHHHHHhh
Confidence 456666677789999999999765 3455566666677778875 43222 2445666665544
No 148
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=70.89 E-value=7.3 Score=36.56 Aligned_cols=58 Identities=12% Similarity=-0.042 Sum_probs=39.2
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|++|++|+..-..+.+ .+..++++++.+.+ +..+ =++=|+|-.+|-+.+++.+-.
T Consensus 105 ~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~--Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 105 EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMET--SAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHHHH
Confidence 4799999999987543222 23455666777775 4433 345678999988888877653
No 149
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=70.88 E-value=5.2 Score=44.20 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=28.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.++|+++| |-|.|||||+.-|+..| .+.|+++.+.
T Consensus 100 ~~vi~lvG----~~GvGKTTtaaKLA~~l-~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVG----LQGSGKTTTCTKLAYYY-QRKGFKPCLV 134 (429)
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCCEEEE
Confidence 35788887 57999999999999999 4778876654
No 150
>PRK05541 adenylylsulfate kinase; Provisional
Probab=70.69 E-value=6.8 Score=36.44 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
++|++|+++|+ .|.||||++.-|...|. .-+..++
T Consensus 5 ~~~~~I~i~G~----~GsGKst~a~~l~~~l~-~~~~~~~ 39 (176)
T PRK05541 5 PNGYVIWITGL----AGSGKTTIAKALYERLK-LKYSNVI 39 (176)
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcEE
Confidence 56899999996 69999999999999994 4455543
No 151
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.65 E-value=5.7 Score=40.52 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=29.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+.+|+||+ |-|.|||||.-.|.+.+. ..++ .++.+=+|.
T Consensus 80 ~GlilisG----~tGSGKTT~l~all~~i~-~~~~-~iitiEdp~ 118 (264)
T cd01129 80 HGIILVTG----PTGSGKTTTLYSALSELN-TPEK-NIITVEDPV 118 (264)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhhhC-CCCC-eEEEECCCc
Confidence 44899998 569999999999998884 4333 467776663
No 152
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=70.65 E-value=17 Score=41.72 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhcCCcE-EEEecccCCCcHHHHHH----HHHHHHHcCCC--eEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAYGANV-VVAVNMFATDSKAELNA----VRNAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAIN~F~tDT~aEi~~----v~~~~~~~G~~--~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.-..|++.++.+|+|. ||++|+..--++++++. ++++++..|.. .++. +=+.-|+|-.+|-+.+.+...
T Consensus 91 qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~--VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 91 QTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV--TAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE--EeCCCCCCCHHHHHHHHHhhc
Confidence 3457788888899995 79999987655555544 44455544531 1332 234457888888888876654
No 153
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=70.53 E-value=11 Score=44.33 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=53.7
Q ss_pred HhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCH
Q 008480 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSI 524 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I 524 (564)
+++.|+|+|+++|+-.-....+++ -+.++.++.|++ ++. .-+.-|+|-.+|.+.+.+..+.+ ..-+.-|+. .+
T Consensus 108 l~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vvp--iSA~~g~GIdeL~~~I~~~~~~~-~~~~~~yp~--~l 181 (772)
T PRK09554 108 LLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIP--LVSTRGRGIEALKLAIDRHQANE-NVELVHYPQ--PL 181 (772)
T ss_pred HHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEE--EEeecCCCHHHHHHHHHHhhhcc-CCcccCCCH--HH
Confidence 456799999999997654332222 235566778987 443 34566788888888887765432 222344653 58
Q ss_pred HHHHHHHHh-H
Q 008480 525 KEKIDTIAR-S 534 (564)
Q Consensus 525 ~eKIetIA~-I 534 (564)
++.++.+.. +
T Consensus 182 e~~I~~l~~~L 192 (772)
T PRK09554 182 LNEADSLAKVM 192 (772)
T ss_pred HHHHHHHHHHh
Confidence 888888877 5
No 154
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=70.43 E-value=5.8 Score=42.89 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=31.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSl 114 (564)
..+||||+ |-|.|||||.-.|.+.++.......++++=+|.=
T Consensus 149 ~GlilI~G----~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICG----ETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 34899998 5699999999999998853233455778877644
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=70.28 E-value=24 Score=29.79 Aligned_cols=59 Identities=10% Similarity=-0.038 Sum_probs=34.0
Q ss_pred HHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHH
Q 008480 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
.+.+....++|++|++|+..--.++..+...+.....+...+. ..=+..|+|-.++-+.
T Consensus 100 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 100 EIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPII--PLSAETGKNIDSAFKI 158 (161)
T ss_pred HHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceE--EeecCCCCCHHHHHHH
Confidence 3333333489999999987664433344444444444443233 2337788888777544
No 156
>PLN02348 phosphoribulokinase
Probab=70.19 E-value=6 Score=43.37 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-+|-|+| |.|.||||++-.|.+.|+
T Consensus 50 ~IIGIaG----~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAA----DSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 3555666 679999999999999995
No 157
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=70.19 E-value=5.4 Score=38.58 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=28.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|++++|++ |.|.||||.+.-++.... ..|.+++
T Consensus 21 ~~g~i~~i~G----~~GsGKT~l~~~la~~~~-~~~~~v~ 55 (225)
T PRK09361 21 ERGTITQIYG----PPGSGKTNICLQLAVEAA-KNGKKVI 55 (225)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 6799999999 789999999999987763 4455543
No 158
>PRK15453 phosphoribulokinase; Provisional
Probab=70.18 E-value=5.3 Score=42.17 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+..+|.|||- .|.||||++-.|.+.|+ +.+.+
T Consensus 4 k~piI~ItG~----SGsGKTTva~~l~~if~-~~~~~ 35 (290)
T PRK15453 4 KHPIIAVTGS----SGAGTTTVKRAFEKIFR-RENIN 35 (290)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHHh-hcCCC
Confidence 4568999984 69999999999999994 66643
No 159
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.16 E-value=46 Score=33.00 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=62.8
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEeccc----CCCcH-------HHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF----ATDSK-------AELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F----~tDT~-------aEi~~v~~~~~~~G~~~~~vs~~wakGGe 494 (564)
.++.+.-++.+.++++.|+..+.+|+++|+.- -+ ..+++ +.++.+.+.+++.|+. +++-++-..-.
T Consensus 83 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~- 159 (284)
T PRK13210 83 SRDPATRERALEIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFM- 159 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCcccc-
Confidence 35566778889999999999999999999852 11 12233 2367777888899996 76666521111
Q ss_pred chHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHH
Q 008480 495 GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTI 531 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetI 531 (564)
...+-+..+++.+.. .+|...||. ..++.+-++..
T Consensus 160 ~~~~~~~~l~~~v~~--~~~~~~~D~~h~~~~~~~~~~~l~~~ 200 (284)
T PRK13210 160 NSISKWKKWDKEIDS--PWLTVYPDVGNLSAWGNDVWSELKLG 200 (284)
T ss_pred CCHHHHHHHHHHcCC--CceeEEecCChhhhcCCCHHHHHHHh
Confidence 122334456666532 357776665 33455555543
No 160
>PHA00729 NTP-binding motif containing protein
Probab=69.95 E-value=3.4 Score=41.98 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-|++|| || |.||||++..|++.++
T Consensus 19 nIlItG---~p-GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFG---KQ-GSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEC---CC-CCCHHHHHHHHHHHHH
Confidence 366666 45 9999999999999884
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.73 E-value=3.3 Score=34.19 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=20.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+..++++| |.|.||||++..|++.+.
T Consensus 2 ~~~~~l~G----~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVG----PPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhccC
Confidence 34556655 689999999999988884
No 162
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=69.69 E-value=41 Score=30.44 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHhhc--CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 436 CVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 436 ~~NL~kHIeNi~~f--GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
+.++.+.++.++++ ++|++|+.|+-.-+. +..+...++++..+.+ +.. .=++=|.|-.++-+.+++.+
T Consensus 88 ~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 88 YKNLSKWYEELREYRPEIPCIVVANKIDLDP-SVTQKKFNFAEKHNLP-LYY--VSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECccCch-hHHHHHHHHHHHcCCe-EEE--EeCCCCCCHHHHHHHHHHHH
Confidence 44555666666654 899999999976532 2233345667666765 333 33566788888877777654
No 163
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=69.06 E-value=17 Score=38.05 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=40.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakG 492 (564)
...+-|+++++.|++|.|-.--|..++..|++.+.+++++.|+..+.++..+..|
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 4445555666788887665545778899999999999999999766676666543
No 164
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.05 E-value=12 Score=40.20 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
.|+.+|+-++++|.-+.|++|-|..+.+.| .+.+++. .+.|+..+++++. |.+.++++
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l-~e~GvDaviv~Dp------g~i~l~~e 109 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL-VELGVDAVIVADP------GLIMLARE 109 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH-HHcCCCEEEEcCH------HHHHHHHH
Confidence 588999999999999999999999887777 4555554 4599986667764 55555543
No 165
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=68.80 E-value=4 Score=38.68 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.4
Q ss_pred CCCCCcchhHHHHHHHH
Q 008480 81 PLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL 97 (564)
|-|.||||++--|...|
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999987775554
No 166
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=68.75 E-value=3.9 Score=44.96 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=26.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+|++++ |.|+|||||+.-|+..|..+.|+++.+.
T Consensus 100 ~vi~~vG----~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVG----LQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEEC----CCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3555554 6799999999999999832568876544
No 167
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=68.67 E-value=5.5 Score=39.83 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=40.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
.|++|++|| |.|.||||+.--|-+.. .+......+=|+|=-|=+=|
T Consensus 3 ~G~l~vlsg----PSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G 48 (191)
T COG0194 3 KGLLIVLSG----PSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDG 48 (191)
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCC
Confidence 599999987 89999999999998888 48888899999998886544
No 168
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=68.24 E-value=5.3 Score=38.10 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=19.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|.|+| +.|.||||++--|.+.|.
T Consensus 1 ii~i~G----~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAG----PSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 366666 679999999999999884
No 169
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.00 E-value=83 Score=30.94 Aligned_cols=106 Identities=19% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecccCC--CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC-
Q 008480 435 GCVNLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT- 511 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAIN~F~t--DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~- 511 (564)
=+.+....|+.+++.|+++.+.+-.... .+++++..+.+.+.+.|+..+.+++. -|..--.+..+-+-...+..+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLATPEEVAELVKALREALPD 190 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCC
Confidence 4567888899999999999999944334 77999988888899999987777776 233222333333222222222
Q ss_pred CCCcccCCCCCCHHHHHHHHHh-HhCCCceeeC
Q 008480 512 QPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 543 (564)
Q Consensus 512 ~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S 543 (564)
-.+.+....+.-+-- -+.++- -.|++-|+=|
T Consensus 191 ~~~~~H~Hn~~gla~-an~laA~~aG~~~id~s 222 (265)
T cd03174 191 VPLGLHTHNTLGLAV-ANSLAALEAGADRVDGS 222 (265)
T ss_pred CeEEEEeCCCCChHH-HHHHHHHHcCCCEEEec
Confidence 345555555544443 456666 7787776543
No 170
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.81 E-value=33 Score=31.51 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe----cccCCCcHH--------HHHHHHHHHHHcCCCeEEEcCccccCcc
Q 008480 427 ENVALVEAGCVNLARHIANTKAYGANVVVAV----NMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 427 eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI----N~F~tDT~a--------Ei~~v~~~~~~~G~~~~~vs~~wakGGe 494 (564)
++-+ -++.+..+.+.|+-.+.+|++.|+.- +....++.+ -++.+.+.|++.|+. +++-++......
T Consensus 62 ~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~ 139 (213)
T PF01261_consen 62 ANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGPFSE 139 (213)
T ss_dssp SSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSS
T ss_pred cchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCcccc
Confidence 3434 78888899999999999999998876 244444443 345556677788996 777777666655
Q ss_pred ch--HHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 495 GA--VDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 495 Ga--~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
.. .+-+..+++.+. +.++.++||..
T Consensus 140 ~~~~~~~~~~~l~~~~--~~~~~i~~D~~ 166 (213)
T PF01261_consen 140 TPFSVEEIYRLLEEVD--SPNVGICFDTG 166 (213)
T ss_dssp EESSHHHHHHHHHHHT--TTTEEEEEEHH
T ss_pred chhhHHHHHHHHhhcC--CCcceEEEehH
Confidence 54 244445555553 23488888764
No 171
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=67.77 E-value=3.7 Score=47.33 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=27.4
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
|+|| +|..|.|||++|.||.++| .+.|.++. ..|
T Consensus 5 l~I~---~T~t~~GKT~vslgL~~~L-~~~G~~Vg-~fK 38 (684)
T PRK05632 5 IYLA---PTGTGVGLTSVSLGLMRAL-ERKGVKVG-FFK 38 (684)
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHH-HhCCCeEE-EeC
Confidence 5554 6788999999999999999 58888744 456
No 172
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=67.68 E-value=4.9 Score=37.62 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++|+++| |.|.||||.+--|.+.+.
T Consensus 2 ~~~i~l~G----~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNG----GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhhC
Confidence 78999998 579999999999988763
No 173
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.67 E-value=4.7 Score=39.42 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=18.8
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
|-|.|||||..=|+--+. ..|++..
T Consensus 9 ptGvGKTTt~aKLAa~~~-~~~~~v~ 33 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLK-LKGKKVA 33 (196)
T ss_dssp STTSSHHHHHHHHHHHHH-HTT--EE
T ss_pred CCCCchHhHHHHHHHHHh-hccccce
Confidence 679999999999999995 4466643
No 174
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.63 E-value=4 Score=45.54 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|+||| |-.|.||||+|.||+++|.
T Consensus 241 i~Iag---t~Tg~GKT~vt~~L~~al~ 264 (476)
T PRK06278 241 IILLA---TGSESGKTFLTTSIAGKLR 264 (476)
T ss_pred EEEEe---CCCCCCHHHHHHHHHHHHH
Confidence 77776 5689999999999999995
No 175
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=67.61 E-value=35 Score=32.25 Aligned_cols=59 Identities=7% Similarity=-0.064 Sum_probs=38.5
Q ss_pred hcCCcEEEEecccCCC--cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 448 AYGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tD--T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..++|+|++.|+-.-. .....+.+.++|++.++..+.. .=++=|+|-.++-+.+++.+-
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e--~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE--TSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE--EeCCCCCCHHHHHHHHHHHHH
Confidence 4679999999997653 2223445678888888432332 234457888887777776553
No 176
>PF05729 NACHT: NACHT domain
Probab=67.52 E-value=5.2 Score=35.38 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++++|+| +.|.||||+..-+++.+.
T Consensus 1 r~l~I~G----~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISG----EPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEEC----CCCCChHHHHHHHHHHHH
Confidence 3677777 689999999999999994
No 177
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=67.40 E-value=13 Score=38.11 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=64.9
Q ss_pred HHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEE---EEeehh-HHHhcCCCCCccCCCCCcccccc-
Q 008480 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIR-ALKMHGGGPQVVAGKPLDHAYLN- 426 (564)
Q Consensus 352 Atk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avV---lVaTvR-ALK~HGG~~~~~~g~PLp~~l~~- 426 (564)
-+++.-|..--.||+||-..|..+. .++|++ .||..|+..-.++ -+.+.+ +++|.- . +|-.+|+++.+
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-~----~Gv~vP~~~~~~ 219 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-R----CGAEIPAWLVKR 219 (272)
T ss_pred HHHHHHHHHcCCCeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-c----cCCCCCHHHHHH
Confidence 3455666642338999999999876 778888 8999988743222 244555 445543 2 23345655443
Q ss_pred -----ccHHHH-HHHHhhHHHHHHHHhhcCCc--EEEEeccc
Q 008480 427 -----ENVALV-EAGCVNLARHIANTKAYGAN--VVVAVNMF 460 (564)
Q Consensus 427 -----eNl~aL-e~G~~NL~kHIeNi~~fGvP--vVVAIN~F 460 (564)
++.+++ +.|+.--...++.+..+|++ =+..+|++
T Consensus 220 l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~ 261 (272)
T TIGR00676 220 LEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRA 261 (272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCH
Confidence 233333 46888788888888888877 45566665
No 178
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.32 E-value=7.4 Score=42.58 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.|+.|++.+ | -|.|||||+..|+-.+
T Consensus 220 ~~~~i~~vG--p--tGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVG--P--TGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEEC--C--CCCCHHHHHHHHHHHH
Confidence 367777764 4 5999999999999888
No 179
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=67.31 E-value=8 Score=41.45 Aligned_cols=40 Identities=38% Similarity=0.402 Sum_probs=32.8
Q ss_pred EeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 74 VTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
|-+||-+| |.||||+.=.|.+-| .+-|+++.+--=.||--
T Consensus 53 viGITG~P-GaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 53 VIGITGVP-GAGKSTLIEALGREL-RERGHRVAVLAVDPSSP 92 (323)
T ss_pred EEEecCCC-CCchHHHHHHHHHHH-HHCCcEEEEEEECCCCC
Confidence 33666677 999999999999999 58899887776778765
No 180
>PF13245 AAA_19: Part of AAA domain
Probab=67.27 E-value=5.3 Score=33.59 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++.+|+| |.|.|||||.+-+...+
T Consensus 10 ~~~~vv~g----~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQG----PPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHH
Confidence 55777776 89999999999998888
No 181
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=66.87 E-value=21 Score=39.65 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred ccccccccccccCCCC-cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 008480 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (564)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvP-vV 454 (564)
|-|+|+ ++-.+|+. .|+++||.... .|+.. .-..+|+..+..+|+| +|
T Consensus 126 GH~~fi--~~m~~g~~~~D~alLVVda~----~g~~~------------------------~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 126 GHDILM--ATMLNGAAVMDAALLLIAAN----ESCPQ------------------------PQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred CHHHHH--HHHHHHHhhCCEEEEEEECC----CCccc------------------------hhhHHHHHHHHHcCCCcEE
Confidence 345553 56566665 78888888654 12110 0235788888889996 78
Q ss_pred EEecccCCCcHHHHHHHHHHHHH-------cCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 455 VAVNMFATDSKAELNAVRNAAMA-------AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 455 VAIN~F~tDT~aEi~~v~~~~~~-------~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
|+||+-.--++++++.+.+..++ .+++ ++ .+=+.=|+|-.+|-+.+.+.+.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~-ii--pVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAP-II--PISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCe-EE--EeeCCCCCCHHHHHHHHHhhCC
Confidence 99999765445554443333322 2333 22 2334556888788877776554
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=66.74 E-value=9.7 Score=31.93 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.++.|+++| |.|.||||+..-+.+.+.
T Consensus 17 ~~~~~v~i~G----~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 17 PPPKNLLLYG----PPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4578899988 679999999888888773
No 183
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=66.58 E-value=3.8 Score=39.65 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=36.5
Q ss_pred ccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 44 ~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
.+..|.+|+-.+++++ ..| ++.+++ |-|+||||+.-.|.-.+ +......+|.++.|-+
T Consensus 5 ~~~~fr~~~~~~~l~~-------~~g-~~~i~G----~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~ 62 (197)
T cd03278 5 ELKGFKSFADKTTIPF-------PPG-LTAIVG----PNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDV 62 (197)
T ss_pred EEeCCcCcCCCeeeec-------CCC-cEEEEC----CCCCCHHHHHHHHHHHh----ccccchhhcccCHHHH
Confidence 4667777765666652 337 777776 67999999876664333 3333444666666655
No 184
>PRK07667 uridine kinase; Provisional
Probab=66.55 E-value=7.9 Score=37.16 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=23.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk 103 (564)
..+|.++| +-|.||||++--|.+.|+ ..|.
T Consensus 17 ~~iIgI~G----~~gsGKStla~~L~~~l~-~~~~ 46 (193)
T PRK07667 17 RFILGIDG----LSRSGKTTFVANLKENMK-QEGI 46 (193)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHHH-hCCC
Confidence 35666666 569999999999999995 4444
No 185
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=66.53 E-value=5.6 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
|.|.|||++.+.+...+.
T Consensus 8 ~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 8 PTGSGKTLAALLPILELL 25 (144)
T ss_pred CCCCchhHHHHHHHHHHH
Confidence 789999999999999884
No 186
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=66.41 E-value=6.1 Score=35.42 Aligned_cols=33 Identities=33% Similarity=0.330 Sum_probs=24.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
|+|.|++ +--|.||||++..|+..|+ +-|+++.
T Consensus 1 k~i~v~s---~~~g~G~t~~a~~lA~~la-~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWS---PKGGVGKTTLALNLAAALA-RKGKKVL 33 (157)
T ss_dssp EEEEEEE---SSTTSSHHHHHHHHHHHHH-HTTT-EE
T ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHH-hcCCCeE
Confidence 4555554 4458999999999999994 8887743
No 187
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=66.36 E-value=8 Score=36.32 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
..|++|++++.+ |.||||++-.|...|. .-|..
T Consensus 16 ~~~~~i~i~G~~----GsGKstla~~l~~~l~-~~~~~ 48 (184)
T TIGR00455 16 HRGVVIWLTGLS----GSGKSTIANALEKKLE-SKGYR 48 (184)
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCc
Confidence 568999999864 9999999999998883 44544
No 188
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=66.31 E-value=33 Score=29.60 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCcEEEEecccCCC-cHHHHHHHHHHHHHcC-CCeEEEcCccccCccchHHHHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tD-T~aEi~~v~~~~~~~G-~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
+.++.++.++.|+++.+|+.... ++++++.+.+...+.. ...++.+. ++=|+|-.+|-+.+.
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~l~~~l~ 165 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS--ALKGENVDELLEEIV 165 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE--eccCCChHHHHHHHH
Confidence 44555666799999999998765 5666666666655443 22233322 445666666655544
No 189
>PRK13764 ATPase; Provisional
Probab=65.93 E-value=7 Score=44.97 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=28.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.+.||||| |.|.||||+...|.+.++ .-++ .+.++-.|
T Consensus 257 ~~~ILIsG----~TGSGKTTll~AL~~~i~-~~~r-iV~TiEDp 294 (602)
T PRK13764 257 AEGILIAG----APGAGKSTFAQALAEFYA-DMGK-IVKTMESP 294 (602)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHHHh-hCCC-EEEEECCC
Confidence 55699998 569999999999999995 4443 34466544
No 190
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.27 E-value=5.3 Score=37.14 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.+|.| |-|.|||||...+...+
T Consensus 19 ~~~i~G----pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQG----PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-----STTSSHHHHHHHHHHHH
T ss_pred CEEEEC----CCCCChHHHHHHHHHHh
Confidence 455555 56999999999998888
No 191
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=65.26 E-value=7.8 Score=37.50 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCce
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKV 105 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q-aL~~~lgk~~ 105 (564)
+.|.+++|++ |.|.||||++.-++- ++ .-|+++
T Consensus 18 ~~G~~~~i~G----~~G~GKT~l~~~~~~~~~--~~g~~~ 51 (229)
T TIGR03881 18 PRGFFVAVTG----EPGTGKTIFCLHFAYKGL--RDGDPV 51 (229)
T ss_pred cCCeEEEEEC----CCCCChHHHHHHHHHHHH--hcCCeE
Confidence 6799999999 779999999987654 44 236544
No 192
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=65.25 E-value=59 Score=32.23 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=43.8
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEE---ecccCCCcHHH--------HHHHHHHHHHcCCCeEEEcCcc
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVA---VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSHH 489 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVA---IN~F~tDT~aE--------i~~v~~~~~~~G~~~~~vs~~w 489 (564)
+-+..++-+.-+.++|+-.+.+|.+.||. .+.+.. +.+| ++.+.++|++.|+. .++-++.
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~ 151 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMD-LILEPLT 151 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 33566778889999999999999999876 222322 3334 67778888999996 7776653
No 193
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=65.15 E-value=8.5 Score=39.46 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=28.5
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcc
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~F 118 (564)
..-|.||||++..|+++| ++.|+++.+.=-.|+ .|+|
T Consensus 10 ~KGGvGKSt~a~~la~~l-~~~g~~vl~iD~D~~-n~~~ 46 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYK-ASKGQKPLCIDTDPV-NATF 46 (241)
T ss_pred CCCCCcHHHHHHHHHHHH-HhCCCCEEEEECCCC-Cchh
Confidence 578999999999999999 588998755435555 3443
No 194
>PRK06852 aldolase; Validated
Probab=65.10 E-value=60 Score=34.64 Aligned_cols=105 Identities=16% Similarity=0.056 Sum_probs=63.7
Q ss_pred HHhhHHHHHHHHhhcCCcEEE---EecccCCC-c-HHHHHHHHHHHHHcCCCeEEEcCccc-cCccchHHHHHHHHHHhh
Q 008480 435 GCVNLARHIANTKAYGANVVV---AVNMFATD-S-KAELNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVV---AIN~F~tD-T-~aEi~~v~~~~~~~G~~~~~vs~~wa-kGGeGa~eLA~~Vvea~e 508 (564)
=+.||.+=++..++||+|+|+ .-.....| . .+-|....+.|.|+|+. ++..-|. +=|+|-.+.=++|++.|-
T Consensus 152 ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGAD--IVKv~y~~~~~~g~~e~f~~vv~~~g 229 (304)
T PRK06852 152 MLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD--FVKVNYPKKEGANPAELFKEAVLAAG 229 (304)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCC--EEEecCCCcCCCCCHHHHHHHHHhCC
Confidence 345788888999999999886 22322222 2 35677778888999996 4666775 223344555556777762
Q ss_pred cCCCCCcccCCCCCCHHHHHHHHHh-H--hCCCceeeC
Q 008480 509 NVTQPLKFLYPLDVSIKEKIDTIAR-S--YGASGVEYS 543 (564)
Q Consensus 509 ~~~~~fk~LYd~~~~I~eKIetIA~-I--YGA~~V~~S 543 (564)
+.+.=+.=-...+.++=++.+-. | -||.+|.+=
T Consensus 230 --~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 230 --RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred --CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 12222222233355555555555 4 488888774
No 195
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=65.02 E-value=5.4 Score=37.57 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=34.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
+|.|+++| |.|.||||+.--|.+.+..+++.-..-+-|.|-.|
T Consensus 2 ~r~ivl~G----psg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~ 44 (183)
T PF00625_consen 2 RRPIVLVG----PSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG 44 (183)
T ss_dssp SSEEEEES----STTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhcccccccceeecccCCccc
Confidence 56677765 88999999999999998656777778889998665
No 196
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=64.84 E-value=8.5 Score=38.69 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.+|..|..|+. .|.||||.+-.|.+.| ...|+.+.+
T Consensus 21 ~~~~viW~TGL----SGsGKSTiA~ale~~L-~~~G~~~y~ 56 (197)
T COG0529 21 QKGAVIWFTGL----SGSGKSTIANALEEKL-FAKGYHVYL 56 (197)
T ss_pred CCCeEEEeecC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 45889999996 6999999999999999 588998775
No 197
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=64.69 E-value=5.2 Score=39.37 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=18.5
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
||||+ || |.||||++--|+..++
T Consensus 10 ILvtG---TP-G~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 10 ILVTG---TP-GTGKSTLAERLAEKTG 32 (176)
T ss_pred EEEeC---CC-CCCchhHHHHHHHHhC
Confidence 88887 55 9999999888876663
No 198
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=64.67 E-value=23 Score=32.09 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=38.3
Q ss_pred hhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
...++|+|+++|+..-....+-+...++++..|....-+-..=++-|+|-.+|.+.+.+.+
T Consensus 116 ~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 116 LENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3578999999999875322222334556666666311122444677899888888877654
No 199
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=64.54 E-value=4.7 Score=38.44 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=22.7
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
|-|+| |.|.||||++--|.+.|+ ..|..+
T Consensus 2 IgI~G----~sgSGKTTla~~L~~~L~-~~~~~~ 30 (194)
T PF00485_consen 2 IGIAG----PSGSGKTTLAKRLAQILN-KRGIPA 30 (194)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHHT-TCTTTC
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC-ccCcCc
Confidence 45555 679999999999999995 556554
No 200
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=64.24 E-value=14 Score=38.23 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhcCC-cEEEEecccCCCcHHHHHHHHHHHHHcC-CCeEEEcCccccCccc-hHHHHHHHH
Q 008480 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKG-AVDLGIAVQ 504 (564)
Q Consensus 438 NL~kHIeNi~~fGv-PvVVAIN~F~tDT~aEi~~v~~~~~~~G-~~~~~vs~~wakGGeG-a~eLA~~Vv 504 (564)
=|.+||+|+.+-|+ .+||+.|.|..| +++++.++.. ...++.+..+.+|.-| ++-+|+..+
T Consensus 33 ii~~~i~~L~~~gi~e~vvV~~g~~~~------lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~ 96 (239)
T COG1213 33 IIYRTIENLAKAGITEFVVVTNGYRAD------LVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYM 96 (239)
T ss_pred eHHHHHHHHHHcCCceEEEEeccchHH------HHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhh
Confidence 57899999999988 567777899876 6666667655 2346788889999844 344454443
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.21 E-value=9.4 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk 103 (564)
++|+.|++.| |-|.|||||..-|+..+..+.|.
T Consensus 135 ~~g~ii~lvG----ptGvGKTTtiakLA~~~~~~~G~ 167 (374)
T PRK14722 135 ERGGVFALMG----PTGVGKTTTTAKLAARCVMRFGA 167 (374)
T ss_pred cCCcEEEEEC----CCCCCHHHHHHHHHHHHHHhcCC
Confidence 4577888776 66999999999999876334454
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=64.21 E-value=4.3 Score=34.89 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=17.3
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+|+| |.|.||||++-=|++-+
T Consensus 2 I~I~G----~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISG----PPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHH
Confidence 56666 57999999888887766
No 203
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=63.95 E-value=33 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=35.9
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCC--CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHH
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~t--DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
.+.+.++.+.. .+.|++|++|+... +.+.-.+.+++++++.++. ++.+... =|+|-.++-+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~--~~~~i~~~~~~i 157 (159)
T cd00154 90 NLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAK--TGENVEELFQSL 157 (159)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecC--CCCCHHHHHHHH
Confidence 33444444444 46999999999765 2222334556777777775 4444332 245555554443
No 204
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.76 E-value=8.4 Score=42.75 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+++|++++ |.|.|||||+.-|+..+....|+++.+.
T Consensus 222 ~~~vi~lvG----ptGvGKTTtaaKLA~~~~~~~G~~V~Li 258 (432)
T PRK12724 222 QRKVVFFVG----PTGSGKTTSIAKLAAKYFLHMGKSVSLY 258 (432)
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHHHhcCCeEEEe
Confidence 356788876 7899999999999975533457766543
No 205
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=63.52 E-value=78 Score=29.09 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=29.9
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEe----cccCC-----CcHHHHH----HHHHHHHHcCCC
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAV----NMFAT-----DSKAELN----AVRNAAMAAGAF 481 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAI----N~F~t-----DT~aEi~----~v~~~~~~~G~~ 481 (564)
.++..++. +++=|+-+++.|.++|+.. +.... ...++++ +++++|++.++.
T Consensus 77 ~~~~~~~~---~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~ 140 (183)
T cd04501 77 SLEMIKDN---IRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLL 140 (183)
T ss_pred CHHHHHHH---HHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 34555554 4455555678898877764 22221 2234444 477888888886
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=63.19 E-value=10 Score=36.14 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
..++.|+++| |.|.||||++..+..-+. ..|.+
T Consensus 36 ~~~~~lll~G----~~G~GKT~la~~~~~~~~-~~~~~ 68 (226)
T TIGR03420 36 KGDRFLYLWG----ESGSGKSHLLQAACAAAE-ERGKS 68 (226)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 4567899998 679999999999988874 44544
No 207
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=62.63 E-value=4.1 Score=41.61 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=17.1
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
|+|.||||++-.|++.|+
T Consensus 12 PagsGKsTvak~lA~~Lg 29 (222)
T COG0283 12 PAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCccChHHHHHHHHHHhC
Confidence 999999999999999985
No 208
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=62.56 E-value=11 Score=36.80 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce-EEEecCC
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~-~~~lReP 112 (564)
-|.|.+++|+| |.|.||||.+..++.... +.|.++ ++.+.++
T Consensus 22 ~~~g~~~~i~G----~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 22 IPFPSLILIEG----DHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT 64 (234)
T ss_pred CcCCcEEEEEC----CCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC
Confidence 37799999998 789999999999865442 346665 4555554
No 209
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.56 E-value=36 Score=36.06 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=72.1
Q ss_pred ccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCc-ceEEEEeehhHHHhcCCCCCccCCCCCccc
Q 008480 345 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTP-QCAVIVATIRALKMHGGGPQVVAGKPLDHA 423 (564)
Q Consensus 345 hG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P-~avVlVaTvRALK~HGG~~~~~~g~PLp~~ 423 (564)
+|..+|-||.++-.++|. ++++|=-==|.-=|||+=|||-.-...|.- +++|+.|-++++
T Consensus 107 ~gaTTVAaTMi~A~~aGI-~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsI------------------ 167 (310)
T COG2313 107 NGATTVAATMILAALAGI-KVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSI------------------ 167 (310)
T ss_pred CCcchHHHHHHHHHHcCc-eEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhh------------------
Confidence 566789999999999966 345554444788999999999877777764 445554423222
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecccCC--------------CcHHHHHHHHHHHHHcCC
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFAT--------------DSKAELNAVRNAAMAAGA 480 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVA-IN~F~t--------------DT~aEi~~v~~~~~~~G~ 480 (564)
-.+.+-.|-+..+|||||-- -|.||. ||++||.-+.+.-.++|.
T Consensus 168 -------------LDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 168 -------------LDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGL 226 (310)
T ss_pred -------------hccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCC
Confidence 24567788899999999853 355543 788888766655445554
No 210
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=62.53 E-value=32 Score=30.69 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=36.5
Q ss_pred CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
+.|+||++|+-..-+..++....++.+..+.+ +. ..=++=|+|-.+|-+.+.+.
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEE-VL--KISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCc-eE--EEEecccCCHHHHHHHHHHH
Confidence 89999999998765566665555655544443 32 33367788888887776654
No 211
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=61.74 E-value=10 Score=37.70 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.++.|+|+|- -|+||||+.--|.+.+. .. ...++++=+|
T Consensus 126 ~~~~ili~G~----tGSGKTT~l~all~~i~-~~-~~~iv~iEd~ 164 (270)
T PF00437_consen 126 GRGNILISGP----TGSGKTTLLNALLEEIP-PE-DERIVTIEDP 164 (270)
T ss_dssp TTEEEEEEES----TTSSHHHHHHHHHHHCH-TT-TSEEEEEESS
T ss_pred cceEEEEECC----CccccchHHHHHhhhcc-cc-ccceEEeccc
Confidence 4779999994 59999999999988885 33 3566776653
No 212
>PRK14738 gmk guanylate kinase; Provisional
Probab=61.63 E-value=9.2 Score=37.17 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.4
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 65 ~~~~gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
+.+.+++|+++| |.|.||||+.-.|.
T Consensus 9 ~~~~~~~ivi~G----psG~GK~tl~~~L~ 34 (206)
T PRK14738 9 KPAKPLLVVISG----PSGVGKDAVLARMR 34 (206)
T ss_pred CCCCCeEEEEEC----cCCCCHHHHHHHHH
Confidence 346799999998 68999999665553
No 213
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.40 E-value=84 Score=32.28 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=53.1
Q ss_pred hhcCCcEEEEecccCCCcHHHHHHHHHHHHHcC-CCeEEE---cCccccCccc---hHHHHHHHHHHhhcCCCCCcccCC
Q 008480 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVV---CSHHAHGGKG---AVDLGIAVQRACENVTQPLKFLYP 519 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G-~~~~~v---s~~wakGGeG---a~eLA~~Vvea~e~~~~~fk~LYd 519 (564)
++++.|++|-|+-. +.+++....+.+++.| +.-+-+ |-+...||.. -.++..++++++.+. .++-....
T Consensus 88 ~~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vK 163 (301)
T PRK07259 88 EEFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVK 163 (301)
T ss_pred hccCCcEEEEeccC---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEE
Confidence 35789999888753 4677777777888888 753334 3343333322 145667777766532 12222222
Q ss_pred CCCCHHHHHHHHHh---HhCCCceeeC
Q 008480 520 LDVSIKEKIDTIAR---SYGASGVEYS 543 (564)
Q Consensus 520 ~~~~I~eKIetIA~---IYGA~~V~~S 543 (564)
....++ .+..+|+ -.|+|.|+++
T Consensus 164 l~~~~~-~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 164 LTPNVT-DIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred cCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 222333 3455665 5799999874
No 214
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=61.29 E-value=25 Score=31.53 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
|.++...++.+++ -++|+|++.|+..-..+.+ .+..+++++..+++ ++. +=++-|+|-.++-+.+.+.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLE--TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEE--EECCCCcCHHHHHHHHHHHH
Confidence 3455555555555 3689999999976433322 35567788888875 432 33455688777776666544
No 215
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=61.24 E-value=64 Score=33.93 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=54.2
Q ss_pred HHHhhHHHHHHHHhh-cCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEE---cCccccCccchH--HHHHHHHHHh
Q 008480 434 AGCVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSHHAHGGKGAV--DLGIAVQRAC 507 (564)
Q Consensus 434 ~G~~NL~kHIeNi~~-fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~v---s~~wakGGeGa~--eLA~~Vvea~ 507 (564)
.|.....++|..+++ +++|++|-|+- .+.+|...+.+.++++|+.-+.+ |-.-..++.|.. +...++++.+
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~g---~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v 160 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLNG---SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAV 160 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEecc---CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHH
Confidence 345555677777755 67898888865 33455555555667788863333 211122333321 2233444444
Q ss_pred hcCCCCCcccCCCCCCHHHHHHHHHh---HhCCCceeeCHHH
Q 008480 508 ENVTQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYSEEV 546 (564)
Q Consensus 508 e~~~~~fk~LYd~~~~I~eKIetIA~---IYGA~~V~~S~~A 546 (564)
.+. .+ .|+.-.--+..+-+..+|+ -+|+++|+.+...
T Consensus 161 ~~~-~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 161 KSA-VS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred Hhc-cC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 321 11 2222111111112344444 6899999886553
No 216
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=61.13 E-value=9.3 Score=42.53 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCHHHHHHHcCCCCc-ccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 29 LHISEIAQELNLKPN-HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 29 ~pI~~ia~~lgl~~~-~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.|+-+.|++.|++.. |+| +.-|.. +..+.|-||+.| ||||||-=+.+-| +..|.++.+
T Consensus 83 ~p~v~~A~~~gi~i~~die------------L~~r~~--~~~p~vaITGTN------GKTTTTsli~~~l-~~~G~~~~l 141 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIE------------LFYRLS--GEAPIVAITGTN------GKTTTTSLIAHLL-KAAGLDALL 141 (448)
T ss_pred CHHHHHHHHcCCcEEeHHH------------HHHHhc--CCCCEEEEECCC------chHHHHHHHHHHH-HhcCCCcee
Confidence 367777888888632 222 222221 345599999887 9999999999999 589998764
Q ss_pred EecCCCCCCccccccCCCCCCceeee-----------cCcccccccchhhhHHHH-HHhHHHHHHH
Q 008480 108 CLRQPSQGPTFGIKGGAAGGGYSQVI-----------PMDEFNLHLTGDIHAITA-ANNLLAAAID 161 (564)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysQv~-----------Pme~iNLHfTGD~hAIta-A~NLlaA~id 161 (564)
||--|..-+++. =+..|-||.|=.|..--+ =-|+=..-+|
T Consensus 142 --------------gGNIG~p~l~~~~~~~~~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD 193 (448)
T COG0771 142 --------------GGNIGTPALELLEQAEPADVYVLELSSFQLETTSSLRPEIAVILNISEDHLD 193 (448)
T ss_pred --------------ccccCccHHHhhcccCCCCEEEEEccccccccCccCCccEEEEecCCHHHhh
Confidence 455555555544 355678887765554322 1344444445
No 217
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=61.05 E-value=13 Score=38.30 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.++.|.||+ |-|.||||+..-|+..+. ..|.++.+.-=.|
T Consensus 32 ~~~~~i~i~G----~~G~GKttl~~~l~~~~~-~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITG----TPGAGKSTLLEALGMELR-RRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 4688888886 579999999999999995 7788876544333
No 218
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=60.53 E-value=55 Score=30.15 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhc---CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCC
Q 008480 438 NLARHIANTKAY---GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 514 (564)
Q Consensus 438 NL~kHIeNi~~f---GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~f 514 (564)
.+.+|++.+.+. ++|+++-.+-..+-+.+++..+.+.+.+.|+.-+-.+..|..|+.. .+..+++.+.... +-+|
T Consensus 98 ~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~-~~~~~~i~~~~~~-~~~v 175 (201)
T cd00945 98 EVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGAT-VEDVKLMKEAVGG-RVGV 175 (201)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC-HHHHHHHHHhccc-CCcE
Confidence 566777777764 8998887774444457777777777788899744455556554443 4455566665421 1234
Q ss_pred cccCCCCCCHHHHHHHHHh--HhCCCceeeC
Q 008480 515 KFLYPLDVSIKEKIDTIAR--SYGASGVEYS 543 (564)
Q Consensus 515 k~LYd~~~~I~eKIetIA~--IYGA~~V~~S 543 (564)
..+-..+ +. +.+.. ..||+++.++
T Consensus 176 ~~~gg~~-~~----~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 176 KAAGGIK-TL----EDALAAIEAGADGIGTS 201 (201)
T ss_pred EEECCCC-CH----HHHHHHHHhccceeecC
Confidence 3344333 22 22333 4588887653
No 219
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=59.85 E-value=25 Score=31.89 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=39.3
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.+.++++++ .++|+||+.|+.....+.. .+.+++++++.++. +. ++=+.-|+|-.++-+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 94 HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FM--ETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHHHHH
Confidence 45556666655 4799999999976542222 23456777777775 33 22245566666655555443
No 220
>PRK06547 hypothetical protein; Provisional
Probab=59.78 E-value=7 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
-.+|+|+| |.|.||||++--|++.+
T Consensus 15 ~~~i~i~G----~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDG----RSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 44777776 68999999998888765
No 221
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=59.49 E-value=22 Score=34.57 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecccC--CCcHHHHHHHHHHHHHcCC
Q 008480 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA 480 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~--tDT~aEi~~v~~~~~~~G~ 480 (564)
...+-|+.++++|+++.|...-++ .|+++|++.+.+++++.|.
T Consensus 144 ~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 144 PTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 344556667788999877666666 6889999999999999994
No 222
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.41 E-value=56 Score=32.78 Aligned_cols=87 Identities=9% Similarity=0.047 Sum_probs=54.1
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEeccc----CCCcHHH-------HHHHHHHHHHcCCCeEEEcCc---cccC
Q 008480 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMF----ATDSKAE-------LNAVRNAAMAAGAFDAVVCSH---HAHG 492 (564)
Q Consensus 427 eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F----~tDT~aE-------i~~v~~~~~~~G~~~~~vs~~---wakG 492 (564)
+|.+.-++.+..++++|+-.+.+|.|+|+. .-. ..++++. +..+.++|++.|+. +++-.+ |...
T Consensus 84 ~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t 161 (279)
T TIGR00542 84 KDKAVRQQGLEIMEKAIQLARDLGIRTIQL-AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSS 161 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCEEEe-cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcC
Confidence 456677889999999999999999998864 421 1233422 33455677788996 666543 2222
Q ss_pred ccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 493 GKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 493 GeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
. .+ +.++++.+. +.++..+||.-
T Consensus 162 ~---~~-~~~li~~v~--~~~v~~~~D~~ 184 (279)
T TIGR00542 162 I---SK-WLKWDHYLN--SPWFTLYPDIG 184 (279)
T ss_pred H---HH-HHHHHHHcC--CCceEEEeCcC
Confidence 1 12 233455553 24688887764
No 223
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=59.37 E-value=7.6 Score=34.99 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecC-CCCCCccccccC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ-PSQGPTFGIKGG 123 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRe-PSlGP~FGiKGG 123 (564)
.-|.||||++.-|++.| .+.|++..+.=-. ||+-.-|+.+.+
T Consensus 7 kgG~GKTt~a~~la~~l-~~~g~~V~~id~D~~~~~~~~~~~~~ 49 (116)
T cd02034 7 KGGVGKTTIAALLARYL-AEKGKPVLAIDADPDDLPERLSVEVG 49 (116)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEECCchhhHHHHhhccC
Confidence 57999999999999999 4788886644444 444444555443
No 224
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.23 E-value=8.4 Score=32.78 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.6
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+|+|+ .|.||||++--|.+-+
T Consensus 1 I~i~G~----~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGI----PGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred CEEECC----CCCCHHHHHHHHHHHH
Confidence 556664 6999999887777665
No 225
>PRK13946 shikimate kinase; Provisional
Probab=58.85 E-value=6.9 Score=37.13 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+.|+|+|+ .|.||||++--|++.|+
T Consensus 10 ~~~I~l~G~----~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGL----MGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHcC
Confidence 457999998 49999999998888774
No 226
>PRK06761 hypothetical protein; Provisional
Probab=58.82 E-value=10 Score=39.75 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=30.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+++|+|+|. .|.||||++--|.+-|. ..|.++.. .++|.
T Consensus 3 ~~lIvI~G~----~GsGKTTla~~L~~~L~-~~g~~v~~-~~~~~ 41 (282)
T PRK06761 3 TKLIIIEGL----PGFGKSTTAKMLNDILS-QNGIEVEL-YLEGN 41 (282)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHhcC-cCceEEEE-EecCC
Confidence 578999996 49999999999999994 66776554 44443
No 227
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.77 E-value=1.2e+02 Score=27.52 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=59.9
Q ss_pred chHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccc
Q 008480 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (564)
Q Consensus 348 nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~e 427 (564)
...+...++.+..+ .++-|.-.|++-+.=.+---.+.......+||.|+|-. |......+.+ ...
T Consensus 18 ~~~~~~~l~~~~~~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~---------G~ND~~~~~~-----~~~ 82 (191)
T cd01834 18 VGYVETYLAARYPE-LKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMF---------GINDSFRGFD-----DPV 82 (191)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEe---------ecchHhhccc-----ccc
Confidence 45566666666521 25777777777654332211334445567799888744 3321111000 123
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCc-----------HHHH----HHHHHHHHHcCCC
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDS-----------KAEL----NAVRNAAMAAGAF 481 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT-----------~aEi----~~v~~~~~~~G~~ 481 (564)
+++..+..+..+.+.+.. +.-+.++| .++-|+.+. .+.+ +++++.|++.++.
T Consensus 83 ~~~~~~~~l~~~v~~~~~-~~~~~~ii-~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 149 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKN-KESAPRIV-LVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVA 149 (191)
T ss_pred cHHHHHHHHHHHHHHHHc-ccCCCcEE-EECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 566677766666555541 23455554 456554322 1222 4556667777764
No 228
>PRK14527 adenylate kinase; Provisional
Probab=58.64 E-value=8.7 Score=36.43 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=23.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+++|+|.+ |-|.||||.+--|++-++
T Consensus 4 ~~~~~i~i~G----~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLG----PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 4688999997 579999999998887774
No 229
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=58.63 E-value=9.4 Score=40.15 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.6
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
|.||| +.|.||||++-.|.+.|. +.|.+
T Consensus 2 IgItG----~SGSGKTTv~~~l~~~l~-~~g~~ 29 (277)
T cd02029 2 IAVTG----SSGAGTTTVKRAFEHIFA-REGIH 29 (277)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 55666 679999999999999994 66754
No 230
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=58.62 E-value=21 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=35.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGG 123 (564)
.|.|.| |.+.||||+.--|..-|. +.|.+..+...-.--.+.|..-|.
T Consensus 2 vv~VvG----~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 2 VVQVVG----PKNSGKTTLIRKLINELK-RRGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHHH-HTT--EEEEEE-STTSTTCSTTCH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHh-HcCCceEEEEEccCCCcccCCCCc
Confidence 567777 569999999999999994 789998877776655566776665
No 231
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.41 E-value=11 Score=38.09 Aligned_cols=88 Identities=30% Similarity=0.435 Sum_probs=58.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC-----------CC------------------CCCcc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ-----------PS------------------QGPTF 118 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe-----------PS------------------lGP~F 118 (564)
.|+.||||+ +-+|-|| ++.++| +.-|..+++.-|. || ++|+|
T Consensus 6 aG~~vlvTg---agaGIG~-----~~v~~L-a~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~ 76 (245)
T KOG1207|consen 6 AGVIVLVTG---AGAGIGK-----EIVLSL-AKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVF 76 (245)
T ss_pred cceEEEeec---ccccccH-----HHHHHH-HhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccC
Confidence 599999998 6777776 578999 5899999999885 44 56777
Q ss_pred ccccCCCCCCceeeecCccc-----ccccchhhhHH-----HHHHhHHHHHHHhhh
Q 008480 119 GIKGGAAGGGYSQVIPMDEF-----NLHLTGDIHAI-----TAANNLLAAAIDTRI 164 (564)
Q Consensus 119 GiKGGAaGGGysQv~Pme~i-----NLHfTGD~hAI-----taA~NLlaA~idn~i 164 (564)
=+-|=-.-.|.+-..|.+|| .-||-=.+.|+ ..|.||+.-.++-.|
T Consensus 77 pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaI 132 (245)
T KOG1207|consen 77 PIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAI 132 (245)
T ss_pred chhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceE
Confidence 77777666777777776543 34444333332 235555554444443
No 232
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=58.38 E-value=1.3e+02 Score=29.52 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=57.0
Q ss_pred HhhcCCcEEEEecccCC-------CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 446 TKAYGANVVVAVNMFAT-------DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~t-------DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
.+++|+|++| |-+.. .++++++...+.|.+.|+. ++-. .|. +..+.-+++++.+. -+. .+-
T Consensus 118 ~~~~g~~~ii--e~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD-~Ik~-~~~----~~~~~~~~i~~~~~---~pv-v~~ 185 (235)
T cd00958 118 AHKYGLPLIA--WMYPRGPAVKNEKDPDLIAYAARIGAELGAD-IVKT-KYT----GDAESFKEVVEGCP---VPV-VIA 185 (235)
T ss_pred HHHcCCCEEE--EEeccCCcccCccCHHHHHHHHHHHHHHCCC-EEEe-cCC----CCHHHHHHHHhcCC---CCE-EEe
Confidence 4579999877 55541 2467888766667789996 5433 343 24666677766552 222 121
Q ss_pred C--CCCCHHHHHHHHHh--HhCCCceeeCHHHH
Q 008480 519 P--LDVSIKEKIDTIAR--SYGASGVEYSEEVN 547 (564)
Q Consensus 519 d--~~~~I~eKIetIA~--IYGA~~V~~S~~A~ 547 (564)
. ...+.++-++.+.. -+||++|.+....-
T Consensus 186 GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 186 GGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 2 22577777777776 79999998876654
No 233
>PRK13975 thymidylate kinase; Provisional
Probab=58.05 E-value=8.5 Score=36.09 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++|.+.|+ -|.||||.+--|++.|+
T Consensus 2 ~~~I~ieG~----~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGI----DGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 578888885 69999999999998884
No 234
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=57.85 E-value=31 Score=35.23 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
....|++..-+.|+|+|+.-= .=|++|.+.+.+.|++.|+. +.++-.|+-|=.=...+++...+..
T Consensus 80 ~~~~~~~~al~~g~~vVigtt---g~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l 145 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTT---GFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYL 145 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhc
Confidence 345678888889999998753 34789999999999999997 8889999987655555555555544
No 235
>PRK12289 GTPase RsgA; Reviewed
Probab=57.61 E-value=37 Score=36.49 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
|.+.+..+...|+|+|+++|+-.-.++++++...+..+..|+. +... =+.-|+|-.+|.+.+.
T Consensus 109 LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~i--SA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 109 LSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFI--SVETGIGLEALLEQLR 171 (352)
T ss_pred HHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEE--EcCCCCCHHHHhhhhc
Confidence 3455555567899999999998766677776666666778885 4332 2455677777766554
No 236
>PRK06762 hypothetical protein; Provisional
Probab=57.36 E-value=8.9 Score=35.15 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++|++||. .|.||||.+--|.+.+
T Consensus 2 ~~li~i~G~----~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGN----SGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 358888874 6999999988887776
No 237
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.23 E-value=90 Score=30.99 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccC-CCcHHHHH----HHHHHHH-HcCCCeEEEcCccccCcc-c
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKAELN----AVRNAAM-AAGAFDAVVCSHHAHGGK-G 495 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~-tDT~aEi~----~v~~~~~-~~G~~~~~vs~~wakGGe-G 495 (564)
+..++-+..++.+..|++.|+..+.+|.+.||.- ..+. .++++.++ .+++.++ +.|+. .++-+.+..+.. +
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~ 149 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVV-ILLETTAGKGSQIG 149 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcE-EEEeccCCCCCccC
Confidence 4456778889999999999999999999988752 1122 23344444 4455554 35775 666666544322 1
Q ss_pred -hHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 496 -AVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 496 -a~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
..+-..++++.++.. .++.+++|..
T Consensus 150 ~~~~~~~~ll~~v~~~-~~~g~~lD~g 175 (273)
T smart00518 150 STFEDLKEIIDLIKEL-DRIGVCIDTC 175 (273)
T ss_pred CCHHHHHHHHHhcCCC-CCeEEEEEcc
Confidence 344456667776431 3466666554
No 238
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=57.19 E-value=5.6 Score=36.34 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
|.|.||||.+.-|.+-+..+.+.....+-|+|..|
T Consensus 7 psGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~ 41 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG 41 (137)
T ss_pred CCCCCHHHHHHHHHhcCCccceecccccccCCCCC
Confidence 68999999888887765434455555567888755
No 239
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=57.15 E-value=21 Score=41.35 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=82.2
Q ss_pred hhcccCchHHHHHHHHhhcCCCCeEEeeccc----------cccccccc--cccc-------ccccCCCC-cceEEEEee
Q 008480 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGF----------GADIGAEK--FMNI-------KCRYSGLT-PQCAVIVAT 401 (564)
Q Consensus 342 NIAhG~nSiiAtk~ALklag~~dyvVTEAGF----------GaDlGaEK--F~dI-------kcr~~gl~-P~avVlVaT 401 (564)
..-||-.|++- ||+-+ ..+-+|+|= ..+=| ++ |+|- +.|.-|-+ -|-||||..
T Consensus 161 HVDHGKTTLLD---~lRks---~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 161 HVDHGKTTLLD---ALRKS---SVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred cccCChhhHHH---HHhhC---ceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 46899888873 44444 555556551 12223 44 6664 67777776 788998873
Q ss_pred hhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHH-------
Q 008480 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA------- 474 (564)
Q Consensus 402 vRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~------- 474 (564)
.- -|+ ...-+| -|+.+|.-++|+|||||+-.. .++-++-+.+.
T Consensus 234 ad-----DGV-------------mpQT~E-----------aIkhAk~A~VpiVvAinKiDk-p~a~pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 234 AD-----DGV-------------MPQTLE-----------AIKHAKSANVPIVVAINKIDK-PGANPEKVKRELLSQGIV 283 (683)
T ss_pred cc-----CCc-------------cHhHHH-----------HHHHHHhcCCCEEEEEeccCC-CCCCHHHHHHHHHHcCcc
Confidence 21 122 111222 366677789999999999753 35556666555
Q ss_pred HHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 475 AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 475 ~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
|++.|-. +-+-..=+.=|++--+|+++++-.++
T Consensus 284 ~E~~GGd-VQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 284 VEDLGGD-VQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHcCCc-eeEEEeecccCCChHHHHHHHHHHHH
Confidence 3445553 55556668889999999999987765
No 240
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=56.68 E-value=17 Score=35.24 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce-EEEecC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQ 111 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~-~~~lRe 111 (564)
|.|.+++|++ |-|.|||+.+..++-.. .+.|+++ .+++.+
T Consensus 14 ~~g~~~li~G----~~G~GKt~~~~~~~~~~-~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIG----EYGTGKTTFSLQFLYQG-LKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC
Confidence 5799999999 57999999988876543 1336665 444444
No 241
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.67 E-value=1e+02 Score=30.83 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=55.3
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccC----CCcH-------HHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSK-------AELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~----tDT~-------aEi~~v~~~~~~~G~~~~~vs~~wakGGe 494 (564)
.+|-+.-++....+++.|+..+.+|.|+|+. .-+. .+.+ +.++.+.+.+++.|+. +++-++...- -
T Consensus 88 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~-~ 164 (283)
T PRK13209 88 SEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGYDVYYEQANNETRRRFIDGLKESVELASRASVT-LAFEIMDTPF-M 164 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCcc-c
Confidence 3455667888999999999999999998874 3222 1112 2345566667788996 7776653221 1
Q ss_pred chHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 495 GAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
...+=+..+++.+. +.++...||.
T Consensus 165 ~~~~~~~~ll~~v~--~~~lgl~~D~ 188 (283)
T PRK13209 165 NSISKALGYAHYLN--SPWFQLYPDI 188 (283)
T ss_pred CCHHHHHHHHHHhC--CCccceEecc
Confidence 12233344454443 2468888874
No 242
>PLN02165 adenylate isopentenyltransferase
Probab=56.67 E-value=9 Score=41.15 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++.|++|++.| |-|.||||+++-|++.++
T Consensus 40 ~~~g~iivIiG----PTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMG----ATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEEC----CCCCcHHHHHHHHHHHcC
Confidence 46799998888 459999999999998884
No 243
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=56.60 E-value=42 Score=29.18 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
.+-++++++|+|+++|+.......+. .+...+.+...++ ..=++-|+|-.+|-+.+++
T Consensus 98 ~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~--~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 98 AKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPI--PISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeE--EEecccCCCHHHHHHHHHh
Confidence 34455678999999999866554443 3334456663232 3345567787777776654
No 244
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=56.36 E-value=57 Score=28.65 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=43.5
Q ss_pred hHHHHHHHHh-hcCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTK-AYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~-~fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++..++..++ .+++|+||++|+..... ..+.+..++++++.+++ ++. .=++=|+|-.+|-+.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 92 EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVE--TSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEE--eeCCCCCCHHHHHHHHHHHH
Confidence 3444444443 36899999999987543 23445566778877875 432 23456688888887776654
No 245
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=56.22 E-value=60 Score=29.40 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=39.7
Q ss_pred hhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
...+.|+++++|+..--++++.+...++.+..+.+-+.+| ++-|+|-.+|-+.+.+.+..
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS---a~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS---AKERLGTKILRRTIKELAKI 97 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE---ccccccHHHHHHHHHHHHhh
Confidence 3458999999999875445555444445455555422233 56788888999888887653
No 246
>PRK05439 pantothenate kinase; Provisional
Probab=55.83 E-value=9.8 Score=40.34 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNL 140 (564)
+|.||| |-|.||||++--|.+.|+ +.. +|-..+|++||+|-+
T Consensus 88 iIgIaG----~~gsGKSTla~~L~~~l~-~~~-----------------------~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 88 IIGIAG----SVAVGKSTTARLLQALLS-RWP-----------------------EHPKVELVTTDGFLY 129 (311)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHH-hhC-----------------------CCCceEEEecccccc
Confidence 555555 569999999999988884 331 123468999998754
No 247
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=55.75 E-value=43 Score=30.16 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHHH----HHHHHHHHcC--------------CCeEEEcCccccCccchHHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAAG--------------AFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi~----~v~~~~~~~G--------------~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
.+++.+++.+.|+++++|+...-++++++ .+++..+..+ .+ ++.+. ++-|+|-.+|-+.
T Consensus 105 ~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~S--a~~g~gi~~l~~~ 181 (189)
T cd00881 105 EHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP-IVPGS--ALTGIGVEELLEA 181 (189)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce-EEEEe--cccCcCHHHHHHH
Confidence 44555666899999999997655545544 3444443322 32 33222 5667887887777
Q ss_pred HHHHh
Q 008480 503 VQRAC 507 (564)
Q Consensus 503 Vvea~ 507 (564)
+.+.+
T Consensus 182 l~~~l 186 (189)
T cd00881 182 IVEHL 186 (189)
T ss_pred HHhhC
Confidence 76654
No 248
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=55.59 E-value=8.3 Score=42.40 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-||-||+++ |-|.|||.+++|++|.|+
T Consensus 49 aGr~iLiaG----ppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 49 AGRAILIAG----PPGTGKTALAMAIAKELG 75 (398)
T ss_dssp TT-EEEEEE-----TTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEeC----CCCCCchHHHHHHHHHhC
Confidence 499999998 779999999999999885
No 249
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=55.51 E-value=54 Score=28.92 Aligned_cols=55 Identities=11% Similarity=-0.024 Sum_probs=33.6
Q ss_pred cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.++|++|+.|+..--.+ ...+...+++++.+.+ +..+ =++=|+|-.+|-+.+++.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYET--SAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHh
Confidence 58999999999754211 1223345566666754 3333 244578888877776643
No 250
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=55.39 E-value=15 Score=37.19 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
|.|..++|+| |.|.||||.+.=++-... +.|.++
T Consensus 34 p~gs~~lI~G----~pGtGKT~l~~qf~~~~a-~~Ge~v 67 (259)
T TIGR03878 34 PAYSVINITG----VSDTGKSLMVEQFAVTQA-SRGNPV 67 (259)
T ss_pred ECCcEEEEEc----CCCCCHHHHHHHHHHHHH-hCCCcE
Confidence 5799999999 679999999887655432 347664
No 251
>PRK04040 adenylate kinase; Provisional
Probab=55.32 E-value=10 Score=36.73 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++|+|||+ -|.||||.+--|.+.|
T Consensus 2 ~~~i~v~G~----pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGV----PGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeC----CCCCHHHHHHHHHHHh
Confidence 368899986 5999999999998888
No 252
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=55.26 E-value=38 Score=29.87 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=38.4
Q ss_pred cCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+||++|+-.-.. +...+.+++++++.|+. +. +.=++-|+|-.++-+.+++.+
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FF--ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EE--EEeCCCCCCHHHHHHHHHHHH
Confidence 4799999999865433 22345677888888875 33 333466778888877777654
No 253
>PRK03839 putative kinase; Provisional
Probab=55.23 E-value=9.6 Score=35.57 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=18.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|+++|+ -|.||||++.-|++.++
T Consensus 2 ~I~l~G~----pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGT----PGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4677775 39999999888888773
No 254
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.01 E-value=12 Score=36.75 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+|-+.+.| +-|-||||.++||+--. ...|+++.+.
T Consensus 4 ~~Gli~v~~-----g~GkGKtt~a~g~a~ra-~~~g~~v~iv 39 (173)
T TIGR00708 4 ERGIIIVHT-----GNGKGKTTAAFGMALRA-LGHGKKVGVI 39 (173)
T ss_pred cccEEEEEC-----CCCCChHHHHHHHHHHH-HHCCCeEEEE
Confidence 347666665 47999999999998777 3678887543
No 255
>COG2229 Predicted GTPase [General function prediction only]
Probab=54.85 E-value=29 Score=34.78 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.3
Q ss_pred CcEEEEeccc---CCCcHHHHHHHHHHHHHcCCC
Q 008480 451 ANVVVAVNMF---ATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 451 vPvVVAIN~F---~tDT~aEi~~v~~~~~~~G~~ 481 (564)
+|+|||+|+| ...++++|.-+.+.+. +.++
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~ 154 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLEL-LSVP 154 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCc
Confidence 9999999984 5677788876666654 4565
No 256
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=54.75 E-value=13 Score=42.21 Aligned_cols=49 Identities=29% Similarity=0.457 Sum_probs=36.5
Q ss_pred cchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 56 LLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 56 ~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+-.+.+||.++..| |||.+ |-|.||||.+.+|+.=++ ..|| .+=++-.|
T Consensus 252 ~dkl~eRL~eraeG--ILIAG----~PGaGKsTFaqAlAefy~-~~Gk-iVKTmEsP 300 (604)
T COG1855 252 SDKLKERLEERAEG--ILIAG----APGAGKSTFAQALAEFYA-SQGK-IVKTMESP 300 (604)
T ss_pred CHHHHHHHHhhhcc--eEEec----CCCCChhHHHHHHHHHHH-hcCc-EEeeccCc
Confidence 34566788877778 66665 779999999999999994 8898 44444443
No 257
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=54.45 E-value=12 Score=33.90 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA 99 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~ 99 (564)
...+++|+|+| |.|.||||+..-+.+.+..
T Consensus 21 ~~~~~~~ll~G----~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 21 SGSPRNLLLTG----ESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp S-----EEE-B-----TTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEC----CCCCCHHHHHHHHHHHHHh
Confidence 35688999999 6899999999988888853
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.40 E-value=12 Score=36.09 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
|+-|-||||.++|++-... ..|+++..
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~-~~g~~v~~ 35 (159)
T cd00561 9 TGNGKGKTTAALGLALRAL-GHGYRVGV 35 (159)
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 4559999999999987773 56887654
No 259
>PTZ00369 Ras-like protein; Provisional
Probab=54.29 E-value=65 Score=30.15 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=35.6
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-++|+|++.|+..-..+. +.+...++++..+.+ +..+. ++-|+|-.++-+.+++.+
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~S--ak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETS--AKQRVNVDEAFYELVREI 166 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHH
Confidence 489999999987542111 223355667777775 44333 677888888666666554
No 260
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=53.97 E-value=53 Score=35.20 Aligned_cols=89 Identities=24% Similarity=0.186 Sum_probs=53.9
Q ss_pred hhhhhccC-CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCC-----------
Q 008480 58 SVLDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAA----------- 125 (564)
Q Consensus 58 ~~l~~~~~-~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAa----------- 125 (564)
.+++++.. .++..+|-||+ |-|.||||+.--|...|. ..|.++.+.-=.||-- .-|||-
T Consensus 44 ~l~~~~~~~~~~~~~igi~G----~~GaGKSTl~~~l~~~l~-~~g~~v~vi~~Dp~s~----~~~gallgd~~r~~~~~ 114 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITG----VPGVGKSTFIEALGMHLI-EQGHKVAVLAVDPSST----RTGGSILGDKTRMERLS 114 (332)
T ss_pred HHHHHHhhcCCCcEEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEEEeCCCcc----ccchhhhchHhHHHhhc
Confidence 45555432 23344666665 469999999999999995 7799888777777532 233331
Q ss_pred CCCceeeecCcccccccchhhhHHHHHHhHH
Q 008480 126 GGGYSQVIPMDEFNLHLTGDIHAITAANNLL 156 (564)
Q Consensus 126 GGGysQv~Pme~iNLHfTGD~hAItaA~NLl 156 (564)
...-.-+.+|-- --|+-|.-+.+..|-.++
T Consensus 115 ~~~~~~~r~~~~-~~~l~~~a~~~~~~~~~~ 144 (332)
T PRK09435 115 RHPNAFIRPSPS-SGTLGGVARKTRETMLLC 144 (332)
T ss_pred CCCCeEEEecCC-cccccchHHHHHHHHHHH
Confidence 111234445443 445556666666655554
No 261
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=53.85 E-value=37 Score=40.44 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHH-------HHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNA-------AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~-------~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.|+..++.+++|+||++|+..-.. +..+.+.+. +++.|-. +-+..+=++=|+|-.+|-+.++..
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~~-a~~e~V~~eL~~~~~~~e~~g~~-vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKPG-ANPDRVKQELSEYGLVPEEWGGD-TIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHHhcCCcEEEEEECccccc-cCHHHHHHHHHHhcccHHHhCCC-ceEEEEeCCCCCCchHHHHhhhhh
Confidence 466777889999999999976532 122223222 2333311 112233456788888888777643
No 262
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.83 E-value=15 Score=39.41 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
+.+.|-||+.+ ||||||-=|++.| ...|+++
T Consensus 109 ~~~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~ 139 (445)
T PRK04308 109 GDKVIAITGSN------GKTTVTSLVGYLC-IKCGLDT 139 (445)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HHcCCCe
Confidence 46799999875 9999999999999 4778764
No 263
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=53.83 E-value=1.3e+02 Score=28.16 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=32.2
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEE----ecccCC------CcHHHHHHHHHHHHHcCCC
Q 008480 427 ENVALVEAGCVNLARHIANTKAYGANVVVA----VNMFAT------DSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 427 eNl~aLe~G~~NL~kHIeNi~~fGvPvVVA----IN~F~t------DT~aEi~~v~~~~~~~G~~ 481 (564)
..++..++.+..+ |+.+++.|.++|+. .+.|.. +..+=-+.+++.|++.|+.
T Consensus 87 ~~~~~~~~nl~~i---i~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 87 EPYTTYKEYLRRY---IAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred CcHHHHHHHHHHH---HHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 3556666655555 55566678887775 223332 2233356889999999997
No 264
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.78 E-value=15 Score=40.22 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=27.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.+.|-|||.+ ||||||-=|.+.| ...|+++..
T Consensus 121 ~~~I~VTGTn------GKTTTt~ml~~iL-~~~g~~~~~ 152 (498)
T PRK02006 121 PKVLAITGTN------GKTTTTALTGLLC-ERAGKKVAV 152 (498)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCCEEE
Confidence 3799999986 9999999999999 588988664
No 265
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=53.75 E-value=16 Score=43.50 Aligned_cols=103 Identities=27% Similarity=0.394 Sum_probs=69.8
Q ss_pred cccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 008480 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (564)
Q Consensus 376 lGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVV 455 (564)
-|-|.|-|.+.|-|+|. |.++||.-| |||=-|+ -+ -.|.++|.-..|.||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhGlepq--------------ti-----------ESi~lLR~rktpFiv 597 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHGLEPQ--------------TI-----------ESINLLRMRKTPFIV 597 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hccCCcc--------------hh-----------HHHHHHHhcCCCeEE
Confidence 46899999999999998 778888877 8974332 11 246778888999999
Q ss_pred EecccC------C---------------CcHHHHH-----HHHHHHHHcCCCe------------EEEcCccccCccchH
Q 008480 456 AVNMFA------T---------------DSKAELN-----AVRNAAMAAGAFD------------AVVCSHHAHGGKGAV 497 (564)
Q Consensus 456 AIN~F~------t---------------DT~aEi~-----~v~~~~~~~G~~~------------~~vs~~wakGGeGa~ 497 (564)
|+|+.. + |+.+|.+ .+.+++ ++|.+. +.+--.-|--|+|--
T Consensus 598 ALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVPTSA~sGeGip 676 (1064)
T KOG1144|consen 598 ALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVPTSAISGEGIP 676 (1064)
T ss_pred eehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeeecccccCCCcH
Confidence 999732 1 5555653 234443 456531 112222356799999
Q ss_pred HHHHHHHHHhhc
Q 008480 498 DLGIAVQRACEN 509 (564)
Q Consensus 498 eLA~~Vvea~e~ 509 (564)
+|---+++.++.
T Consensus 677 dLl~llv~ltQk 688 (1064)
T KOG1144|consen 677 DLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 988888887753
No 266
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=53.37 E-value=11 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.2
Q ss_pred CCCCcchhHHHHHHHHhhhcCCceE
Q 008480 82 LGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 82 ~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.|.||||++.-|...|. ..|.++.
T Consensus 8 ~gsGKTtl~~~l~~~l~-~~G~~V~ 31 (155)
T TIGR00176 8 KNSGKTTLIERLVKALK-ARGYRVA 31 (155)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 49999999999999994 6687644
No 267
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=53.18 E-value=11 Score=33.08 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=15.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|+|.| |.|.||||.+--|.+.+
T Consensus 1 lii~~G----~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCG----PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHS
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHC
Confidence 455555 56889999766665444
No 268
>PLN02772 guanylate kinase
Probab=53.15 E-value=12 Score=41.25 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=44.5
Q ss_pred cccCceeeecchhhhhccC--CC-CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 47 LYGKYKAKVLLSVLDELEG--SA-DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 47 ~YG~~kAKi~~~~l~~~~~--~~-~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
||.+-..|+--+-+-+... .+ +.|+|++++ |.|.||||+.--|.+-+-.+++.....+=|.|-.|.+-|
T Consensus 110 ~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsG----PSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG 181 (398)
T PLN02772 110 PFVREQKKLLGTEVVAWSKGVRGNAEKPIVISG----PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDG 181 (398)
T ss_pred HHHHhhcccccceeeecccCCCCCCCcEEEEEC----CCCCCHHHHHHHHhhhccccccccccccCCCCcccccCC
Confidence 5666555543322222221 22 578999988 899999998877766553346666667789988875543
No 269
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=52.97 E-value=1.5e+02 Score=28.79 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCCcEEEEecccC----CCcHHHHHHHHHHHHHcCCCe
Q 008480 438 NLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFD 482 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~----tDT~aEi~~v~~~~~~~G~~~ 482 (564)
.+.+=++.++++|.++.+++|--. .+-..+++.+...|.+.|+..
T Consensus 94 ~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g 142 (215)
T PRK13813 94 SLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFG 142 (215)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 466677888999999999998532 222457888888888999753
No 270
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.77 E-value=9.6 Score=43.80 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=24.1
Q ss_pred cCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 64 ~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..+-.+++.|+|| |+|.|||||--=|+.-|
T Consensus 105 ~~~l~~~iLLltG----PsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 105 TPKLGSRILLLTG----PSGCGKSTTVKVLSKEL 134 (634)
T ss_pred ccCCCceEEEEeC----CCCCCchhHHHHHHHhh
Confidence 3345578999998 89999999987777666
No 271
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=52.64 E-value=33 Score=30.50 Aligned_cols=55 Identities=24% Similarity=0.071 Sum_probs=33.2
Q ss_pred cCCcEEEEecccCCCcHHHHHH--HHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAELNA--VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~--v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.++|+||++|+.....+.++.. .+.+....+.. +..+. ++=|.|-.++-+.+++.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTS--ALRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEe--CCCCCChHHHHHHHHHH
Confidence 5799999999986544433322 23455556654 43333 44567777777666554
No 272
>PRK13974 thymidylate kinase; Provisional
Probab=52.54 E-value=21 Score=34.74 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=33.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC----ceEEEecCCCCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK----KVVTCLRQPSQGP 116 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk----~~~~~lRePSlGP 116 (564)
|++|.+-|+ -|.||||.+--|.+-|. .-|+ ..+...|+|.-.|
T Consensus 3 g~~i~~eG~----dGsGKsT~~~~l~~~l~-~~g~~~~~~~~~~~~~p~~~~ 49 (212)
T PRK13974 3 GKFIVLEGI----DGCGKTTQIDHLSKWLP-SSGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHHH-hcCccccCCeeeeeeCCCCCc
Confidence 788888886 69999999999999984 4454 3567778886433
No 273
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=52.50 E-value=11 Score=40.87 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=24.0
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
.||..|+|||.++.||..+| .+.|.+.
T Consensus 8 ~p~~~~~G~tsi~lgLl~~l-~~k~~kv 34 (354)
T COG0857 8 IPTETGVGKTSISLGLLRAL-EQKGLKV 34 (354)
T ss_pred eccCCCccHHHHHHHHHHHH-HHcCcee
Confidence 49999999999999999999 4777773
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=52.49 E-value=15 Score=39.14 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCCcccccccCc----eeeecch--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc
Q 008480 31 ISEIAQELNLKPNHYDLYGKY----KAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (564)
Q Consensus 31 I~~ia~~lgl~~~~l~~YG~~----kAKi~~~--~l~~~-~--~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l 101 (564)
+.+|-+++|=. .+-..|.. ..+++.. -||.+ . .=|.|++++|.+ |.|.||||++.-++-.. .+.
T Consensus 10 ~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~G----p~GsGKTtLal~~~~~~-~~~ 82 (325)
T cd00983 10 LKQIEKKFGKG--SIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYG----PESSGKTTLALHAIAEA-QKL 82 (325)
T ss_pred HHHHHHHhCCc--ceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 55666666542 23333421 1233332 34443 2 347899999999 78999999999887666 354
Q ss_pred CCceE
Q 008480 102 DKKVV 106 (564)
Q Consensus 102 gk~~~ 106 (564)
|.+++
T Consensus 83 g~~~v 87 (325)
T cd00983 83 GGTVA 87 (325)
T ss_pred CCCEE
Confidence 54443
No 275
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=52.36 E-value=13 Score=39.07 Aligned_cols=36 Identities=31% Similarity=0.260 Sum_probs=25.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNL 140 (564)
|-|.||||++--|..-|. ++ |+ +|..++++||.+.+
T Consensus 70 ~~GSGKSTlar~L~~ll~-~~----------~~-------------~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 70 SVAVGKSTTARILQALLS-RW----------PE-------------HRKVELITTDGFLH 105 (290)
T ss_pred CCCCCHHHHHHHHHHHHh-hc----------CC-------------CCceEEEecccccc
Confidence 679999999977765552 32 22 35678999998764
No 276
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=52.20 E-value=41 Score=35.92 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=42.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+.+|.|.||+ .-|+||||++.-|+.+| ++.|+++.+. +|.||+.-.||++.
T Consensus 29 ~~~~ii~v~g----kgG~GKSt~a~nLa~~l-a~~g~rVllid~D~~~~~~~~~~g~~~ 82 (329)
T cd02033 29 KKTQIIAIYG----KGGIGKSFTLANLSYMM-AQQGKRVLLIGCDPKSDTTSLLFGGKA 82 (329)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCcEEEEEeeecccccchhccccC
Confidence 4588888884 57999999999999999 5889998765 89999888887653
No 277
>PLN02748 tRNA dimethylallyltransferase
Probab=52.11 E-value=11 Score=42.18 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh-hhcCCceEEEecCCCCC---CccccccCCCCCCceeeecCcccccc
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG-AFLDKKVVTCLRQPSQG---PTFGIKGGAAGGGYSQVIPMDEFNLH 141 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~-~~lgk~~~~~lRePSlG---P~FGiKGGAaGGGysQv~Pme~iNLH 141 (564)
.+++++|+|+| |-|.||||+++-|++.++ ..+.-.++-.-|.=..| |+--=.-|.-=-.+.-|-|-|++|.
T Consensus 19 ~~~~~~i~i~G----ptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv- 93 (468)
T PLN02748 19 KGKAKVVVVMG----PTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTA- 93 (468)
T ss_pred CCCCCEEEEEC----CCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcH-
Confidence 35688999988 559999999999999884 23334443333322221 1111111222223344556666665
Q ss_pred cchhhhHHHHHHhHHHH
Q 008480 142 LTGDIHAITAANNLLAA 158 (564)
Q Consensus 142 fTGD~hAItaA~NLlaA 158 (564)
||| ...|..++..
T Consensus 94 --~~F--~~~A~~~I~~ 106 (468)
T PLN02748 94 --KDF--RDHAVPLIEE 106 (468)
T ss_pred --HHH--HHHHHHHHHH
Confidence 555 3344444444
No 278
>COG4240 Predicted kinase [General function prediction only]
Probab=52.11 E-value=12 Score=39.23 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=27.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l 109 (564)
+.|+ =++-+| --|-|+||||+|+-|.--| .+.|-.+++.+
T Consensus 46 e~gr-Pli~gi-sGpQGSGKStls~~i~~~L-~~kg~ert~~l 85 (300)
T COG4240 46 ERGR-PLIVGI-SGPQGSGKSTLSALIVRLL-AAKGLERTATL 85 (300)
T ss_pred hcCC-ceEEEe-ecCCCCchhhHHHHHHHHH-HHhcccceEEe
Confidence 3344 233344 2489999999999999999 57774455443
No 279
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=52.04 E-value=11 Score=35.86 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|+.|++++ |-|.||||+.-.|.+-+
T Consensus 23 ~~g~~i~I~G----~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISG----GTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 3488999999 78999999988887776
No 280
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.04 E-value=16 Score=39.29 Aligned_cols=31 Identities=26% Similarity=0.103 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.|.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (438)
T PRK04663 108 KPVIAITGSN------GKSTVTDLTGVMA-KAAGVKVA 138 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHCCCCEE
Confidence 5799999886 9999999999999 48888854
No 281
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=52.03 E-value=14 Score=38.40 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++.|+++|+ -|.||||++--|++.|
T Consensus 132 ~~~~I~l~G~----~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGL----RGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHc
Confidence 5889999997 6999999988887766
No 282
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=51.88 E-value=8.3 Score=32.97 Aligned_cols=18 Identities=50% Similarity=0.722 Sum_probs=15.8
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
|.|.||||++--|++.++
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 789999999998888873
No 283
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=51.85 E-value=53 Score=33.82 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
.+++.+..++..++|+|+++|+-.-.++.+......++.+.|.. +... =++=|+|-.+|-+.+
T Consensus 97 ~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~-v~~v--SA~~g~gi~~L~~~L 159 (287)
T cd01854 97 LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP-VLAV--SAKTGEGLDELREYL 159 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe-EEEE--ECCCCccHHHHHhhh
Confidence 45677777778899999999997764444433334445667775 3322 234556766665543
No 284
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=51.72 E-value=72 Score=28.85 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=35.3
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-++|++|+.|+..-..+. ..+..+++++..+..-+-+|-. =|+|-.++-+.+++.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK---ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC---CCCCHHHHHHHHHHHH
Confidence 478999999987543211 2334566777777752333433 3578888877777665
No 285
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=51.67 E-value=71 Score=31.18 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccch
Q 008480 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa 496 (564)
|+|+.|.+..=.- +++||....+.|.++|+..+-.++.|..+|.--
T Consensus 116 g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~ 161 (203)
T cd00959 116 GAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGATV 161 (203)
T ss_pred CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCH
Confidence 8999887775333 588999999999999997444567798766543
No 286
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=51.58 E-value=17 Score=42.63 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=29.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.++++||+ ++|.||||+..++.+++ ...|.++++|
T Consensus 368 ~~~~il~G----~aGTGKTtll~~i~~~~-~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVG----RAGTGKSTMLKAAREAW-EAAGYRVIGA 402 (744)
T ss_pred CCEEEEEe----cCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 46888988 69999999999999999 4778877655
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.57 E-value=19 Score=39.31 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=20.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+++|++.| || |.|||||+.-|+-.+.
T Consensus 174 ~~vi~lvG--pt--GvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVG--PT--GVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 45666644 55 9999999999998773
No 288
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=51.46 E-value=49 Score=28.93 Aligned_cols=59 Identities=27% Similarity=0.299 Sum_probs=36.2
Q ss_pred HhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++++++|+|+++|+...-.++++. .+.++++..+.. +..+. +.-|+|-.+|-+.+.+++
T Consensus 97 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iS--a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 97 LLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTS--ARKGEGIDELKDAIAELA 156 (158)
T ss_pred HHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEE--ccCCCCHHHHHHHHHHHh
Confidence 445799999999997753332222 234555666775 43332 345667777777766654
No 289
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.46 E-value=21 Score=32.18 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA 477 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~ 477 (564)
.+..|++-..++|+|+|+.-=-| |++|++.+++++++
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF---SDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS---HHHHHHHHHHHTTT
T ss_pred HhHHHHHHHHhCCCCEEEECCCC---CHHHHHHHHHHhcc
Confidence 55678888889999999987666 68899999998876
No 290
>PLN02840 tRNA dimethylallyltransferase
Probab=51.38 E-value=11 Score=41.67 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+++|+++| |.|.||||+++-|++.++
T Consensus 19 ~~~~vi~I~G----ptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 19 KKEKVIVISG----PTGAGKSRLALELAKRLN 46 (421)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4577888877 569999999999999885
No 291
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=51.28 E-value=13 Score=42.06 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=23.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
....++.|+|| |.|.|||||.-=|++-|+
T Consensus 42 ~~~~~iLlLtG----P~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 42 SSPKRILLLTG----PSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CCCcceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 34567888898 999999999887777763
No 292
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=50.92 E-value=87 Score=28.49 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=35.6
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccc-cCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wa-kGGeGa~eLA~~Vvea 506 (564)
-++|+|++.|+..-....+ .+...++++..+.. +..+.... .++++-.++-..+++.
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCCHHHHHHHHHHH
Confidence 4699999999977533332 23445666766665 55555554 4577766666665543
No 293
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=50.81 E-value=63 Score=28.79 Aligned_cols=54 Identities=26% Similarity=0.259 Sum_probs=34.7
Q ss_pred cCCcEEEEecccCCCcHHHHHHH--HHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAELNAV--RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v--~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
.+.|+||++|+..-.+..++... +..+...+.. +..+ =++-|+|-.+|.+.+.+
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE-VVPI--SAKTEEGLDELIRAIYE 174 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC-EEEE--ehhhhcCHHHHHHHHHh
Confidence 58999999999887666665543 3333333443 3332 35677888777776654
No 294
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=50.61 E-value=20 Score=34.68 Aligned_cols=28 Identities=11% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
-+.|.+++|+| |.|.||||.+.-++-.+
T Consensus 10 l~~G~l~lI~G----~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 10 LQPGDLIIIAA----RPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 36799999999 56999999988876555
No 295
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=50.54 E-value=1.1e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=38.6
Q ss_pred HHHHhh--cCCcEEEEecccCCCcHHH-H-------------HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 443 IANTKA--YGANVVVAVNMFATDSKAE-L-------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 443 IeNi~~--fGvPvVVAIN~F~tDT~aE-i-------------~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.+++ -++|++++.|+..-..+.+ + +...++|++.|...+..+ =++=|+|-.+|-+.+++.
T Consensus 93 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 93 YPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLEC--SALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEe--cCCCCCCHHHHHHHHHHH
Confidence 344443 3899999999976543211 1 223467777776324433 356678888887777765
Q ss_pred h
Q 008480 507 C 507 (564)
Q Consensus 507 ~ 507 (564)
+
T Consensus 171 ~ 171 (174)
T smart00174 171 A 171 (174)
T ss_pred h
Confidence 4
No 296
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=50.43 E-value=44 Score=38.35 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=39.5
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC------eEEEcCccccCccchHHHHHHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~------~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.|++.++.+++|+||++|+-.-.. ++.+.+++.+++.|.. +.-+-..=|+=|+|-.+|-+.++..
T Consensus 178 e~i~~~~~~~vPiIVviNKiDl~~-~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 178 EAISHAKAANVPIIVAINKIDKPE-ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred HHHHHHHHcCCCEEEEEECccccc-CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 356667789999999999976421 1223344454444431 0112234466788988988887643
No 297
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=50.28 E-value=1.8e+02 Score=29.61 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=54.5
Q ss_pred HHHHHHhh-cCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEE---cCccccCcc---chHHHHHHHHHHhhcCCCC
Q 008480 441 RHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSHHAHGGK---GAVDLGIAVQRACENVTQP 513 (564)
Q Consensus 441 kHIeNi~~-fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~v---s~~wakGGe---Ga~eLA~~Vvea~e~~~~~ 513 (564)
+++...++ .+.|++|-|+. .+.++.....+.+++.|+.-+.+ |-+...+|+ +..++..+|++.+.+. .+
T Consensus 79 ~~~~~~~~~~~~p~ivsi~g---~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~ 154 (296)
T cd04740 79 EELLPWLREFGTPVIASIAG---STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TD 154 (296)
T ss_pred HHHHHHhhcCCCcEEEEEec---CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cC
Confidence 33444433 68898888874 34667777777788888863323 333333322 3457778888887542 12
Q ss_pred CcccCCCCCCHHHHHHHHHh---HhCCCceeeC
Q 008480 514 LKFLYPLDVSIKEKIDTIAR---SYGASGVEYS 543 (564)
Q Consensus 514 fk~LYd~~~~I~eKIetIA~---IYGA~~V~~S 543 (564)
+-........+. .+..+|+ -.|+|.|.++
T Consensus 155 ~Pv~vKl~~~~~-~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 155 VPVIVKLTPNVT-DIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CCEEEEeCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 222211111222 3555665 4799988774
No 298
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=50.28 E-value=77 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHhhcCCcEEEEecccCCC---cHHHHHHHHHHHHH
Q 008480 443 IANTKAYGANVVVAVNMFATD---SKAELNAVRNAAMA 477 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tD---T~aEi~~v~~~~~~ 477 (564)
+..+...++|+|+++|+-.-. .++.++.+++++.+
T Consensus 110 ~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 110 LKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred HHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 444455799999999997642 23446666776643
No 299
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=50.21 E-value=59 Score=29.05 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=36.6
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|++++.|+..-..+. +.+...+++++.+.+ +..+. ++=|+|-.++-+.+++.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETS--AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHh
Confidence 579999999997653221 122345677777765 44443 455788888888877654
No 300
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.11 E-value=18 Score=39.61 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=47.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC-CccccccCCCCCCceeeecCcccccccchhh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG-P~FGiKGGAaGGGysQv~Pme~iNLHfTGD~ 146 (564)
+.++|-|||.+ ||||||-=|.+-| ...|+++.++= .+| |......+ ..+. |+=+.++.|+++--|
T Consensus 103 ~~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~~~G---niG~p~l~~~~~---~~~~-VlE~ss~ql~~~~~~ 168 (454)
T PRK01368 103 NLKFIAITGTN------GKSTTTALISHIL-NSNGLDYPVAG---NIGVPALQAKAS---KDGY-VLELSSFQLDLVKTF 168 (454)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEEEc---cCCHHHhcccCC---CCEE-EEEcCchhhcccccc
Confidence 34688888875 9999999999999 58899876440 122 22222221 2343 777777777766544
Q ss_pred hH-HHHHHhHHHHHHH
Q 008480 147 HA-ITAANNLLAAAID 161 (564)
Q Consensus 147 hA-ItaA~NLlaA~id 161 (564)
|. |..=.|+=..-+|
T Consensus 169 ~P~iavitNI~~DHLd 184 (454)
T PRK01368 169 TAKIAVLLNITPDHLD 184 (454)
T ss_pred CCCEEEEecCChhHhh
Confidence 32 2222344444444
No 301
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.11 E-value=20 Score=41.16 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..|+.|.++| || |.|||||+.-|+-.+.
T Consensus 348 ~~G~vIaLVG--Pt--GvGKTTtaakLAa~la 375 (559)
T PRK12727 348 ERGGVIALVG--PT--GAGKTTTIAKLAQRFA 375 (559)
T ss_pred cCCCEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 3588888887 44 9999999999988773
No 302
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=50.09 E-value=19 Score=35.67 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.+++|+| |.|.||||++.-++..+
T Consensus 28 ~~g~~~~i~g----~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 28 RKGELIILTA----GTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5699999998 57999999999887766
No 303
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=50.05 E-value=36 Score=31.58 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=24.7
Q ss_pred HHHhhcCCcEEEEecccCCCcHHH----HHHHHHHHHHcC
Q 008480 444 ANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAG 479 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~aE----i~~v~~~~~~~G 479 (564)
+.++.+++|+++++|+.....+++ ++.++++++..+
T Consensus 123 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 123 EWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 334568999999999987655554 455566666554
No 304
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.04 E-value=25 Score=37.63 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=24.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
.+.|-|||. -|||||+-=|.+.| ...|+..
T Consensus 108 ~~vI~ITGS------~GKTTt~~~l~~iL-~~~g~~~ 137 (450)
T PRK14106 108 APIVAITGT------NGKTTTTTLLGEIF-KNAGRKT 137 (450)
T ss_pred CCEEEEeCC------CchHHHHHHHHHHH-HHcCCCe
Confidence 678877776 49999999999999 4778754
No 305
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=49.95 E-value=17 Score=36.00 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=23.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
||+++|. -|.||||.+-.|++-|. ..|.+..
T Consensus 1 LIvl~G~----pGSGKST~a~~La~~l~-~~~~~v~ 31 (249)
T TIGR03574 1 LIILTGL----PGVGKSTFSKELAKKLS-EKNIDVI 31 (249)
T ss_pred CEEEEcC----CCCCHHHHHHHHHHHHH-HcCCceE
Confidence 4677775 59999999999999994 5555543
No 306
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=49.55 E-value=54 Score=28.54 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=39.9
Q ss_pred hHHHHHHHHhh-cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 438 NL~kHIeNi~~-fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
++...+.+... .++|++|++|+.....+. -.+.++++++..+.+ +. ..=++-|+|-.+|-+.+++
T Consensus 91 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 91 GYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FI--ETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EE--EeccCCCCCHHHHHHHHHh
Confidence 34445555544 689999999998754322 224556666777765 32 2224456787777776654
No 307
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=49.52 E-value=9.7 Score=33.46 Aligned_cols=18 Identities=50% Similarity=0.711 Sum_probs=15.3
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
|.|.||||++..|+..++
T Consensus 7 ~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 569999999999988773
No 308
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.48 E-value=55 Score=34.61 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=60.4
Q ss_pred hhHHHhcCCCCCccCCCCCccccccccHHHHHHH--HhhHHHHHHHHhhcCCcEEEE--ecccCCCcHHHHHHHHHHHHH
Q 008480 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMA 477 (564)
Q Consensus 402 vRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G--~~NL~kHIeNi~~fGvPvVVA--IN~F~tDT~aEi~~v~~~~~~ 477 (564)
++.||-. |+.....|- +...++-++.+.++ +....+-|++++++|++.|.+ |=-+|.+|.+++....+++.+
T Consensus 103 l~~l~~~-Gv~risiGv---qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 103 CKGLKGA-GINRLSLGV---QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHc-CCCEEEEec---ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 4777777 577666773 55666777788653 567888999999999975433 556899999999999999999
Q ss_pred cCCCeEEE
Q 008480 478 AGAFDAVV 485 (564)
Q Consensus 478 ~G~~~~~v 485 (564)
.++..+.+
T Consensus 179 l~~~~is~ 186 (360)
T TIGR00539 179 LPINHLSA 186 (360)
T ss_pred cCCCEEEe
Confidence 99874433
No 309
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=49.39 E-value=1.1e+02 Score=27.28 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=36.6
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+|++.|+..-..+. +.+.+.+++++.+++ +..+. ++-|+|-.+|=+.+++.+
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETS--AKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEee--cCCCCCHHHHHHHHHHHH
Confidence 589999999997643221 233455667777765 43332 455888888877777654
No 310
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=49.35 E-value=12 Score=38.30 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=69.5
Q ss_pred cCchHHH--HHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcce---EEEEeehhHHHhcCCCCCccCCCCC
Q 008480 346 GNSSIVA--DKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQC---AVIVATIRALKMHGGGPQVVAGKPL 420 (564)
Q Consensus 346 G~nSiiA--tk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a---vVlVaTvRALK~HGG~~~~~~g~PL 420 (564)
.+.+.-. .++.-|..--.||+||-..|..+. .++|++ +||..|+.--. +-.+.+.+.+.+.-.. .|-.+
T Consensus 154 ~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~----~Gv~i 227 (287)
T PF02219_consen 154 EAPDFEAELKRLKKKIDAGADFIITQPFFDAEA-FERFLD-RLREAGIDVPIIPGIMPLTSAKSARFLAKL----CGVDI 227 (287)
T ss_dssp TCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHH-HHHHHH-HHHHTTHTSEEEEEEE-HCCHHHHHHHHHH----HT-EE
T ss_pred cccCHHHHHHHHHHHHHCCCCEEeccccCCHHH-HHHHHH-HHHHcCCCCcEEEEEeccCCHHHHHHHHhc----cCccC
Confidence 3444433 445555521239999999999988 888888 79999983221 2233455555554222 13345
Q ss_pred cccccc------ccHHHH-HHHHhhHHHHHHHHhhcCCcEE--EEecccCCCcHHHHHHHHHHHHHcC
Q 008480 421 DHAYLN------ENVALV-EAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAG 479 (564)
Q Consensus 421 p~~l~~------eNl~aL-e~G~~NL~kHIeNi~~fGvPvV--VAIN~F~tDT~aEi~~v~~~~~~~G 479 (564)
|+++.+ .+-++. +.|+.-....++.+...|+|=| .++|++ +.+.+.++++|
T Consensus 228 P~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~--------~~~~~il~~lg 287 (287)
T PF02219_consen 228 PDELIERLEEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTMNRE--------ELVPEILENLG 287 (287)
T ss_dssp EHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTTS--------HHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHHHHHcC
Confidence 555443 233333 4588877888888887776543 467766 55666666655
No 311
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=49.27 E-value=14 Score=37.64 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=27.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
|-++||+ |.-|-|||++|-+|+|+|. .-|.+++
T Consensus 3 ~~~fVtG---TDT~VGKTv~S~aL~~~l~-~~g~~~~ 35 (223)
T COG0132 3 KRFFVTG---TDTGVGKTVVSAALAQALK-QQGYSVA 35 (223)
T ss_pred ceEEEEe---CCCCccHHHHHHHHHHHHH-hCCCeeE
Confidence 4577776 6789999999999999994 6788865
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=49.24 E-value=21 Score=35.51 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+.|..++|++ |.|.||||++.-+..++. +-|.+
T Consensus 22 ~~g~~~~i~G----~~G~GKTtl~~~~~~~~~-~~g~~ 54 (230)
T PRK08533 22 PAGSLILIEG----DESTGKSILSQRLAYGFL-QNGYS 54 (230)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCc
Confidence 6688999998 679999999877666652 43543
No 313
>PRK08227 autoinducer 2 aldolase; Validated
Probab=49.02 E-value=1.5e+02 Score=31.03 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=57.1
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecccC--CCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCC
Q 008480 435 GCVNLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAIN~F~--tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~ 512 (564)
=+.+|.+=++...+||+|++.-.=+=+ .|...-|....+.+.|+|+. ++..-|.. +-=++|+++|. .
T Consensus 125 ~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGAD--iVK~~y~~------~~f~~vv~a~~---v 193 (264)
T PRK08227 125 SIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQ--IIKTYYVE------EGFERITAGCP---V 193 (264)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCC--EEecCCCH------HHHHHHHHcCC---C
Confidence 455788888999999999877332211 34444677777788899996 57777762 33335555542 2
Q ss_pred CCcccCCCCCCHHHHHHHHHh--HhCCCceeeC
Q 008480 513 PLKFLYPLDVSIKEKIDTIAR--SYGASGVEYS 543 (564)
Q Consensus 513 ~fk~LYd~~~~I~eKIetIA~--IYGA~~V~~S 543 (564)
+.=..=-...+.++=++.+-. --||.+|.+-
T Consensus 194 PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 194 PIVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 221222223344444444444 3566776654
No 314
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=48.96 E-value=71 Score=28.36 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=33.6
Q ss_pred hhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
...++|++|+.|+...-.+.+ .+.+++++++.+.. +.. .=++=|+|-.++=+.++
T Consensus 102 ~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 102 ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLE--TSALTGENVEEAFLKCA 158 (161)
T ss_pred CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEE--EECCCCCCHHHHHHHHH
Confidence 345899999999975422222 23456677777864 433 33456777766655544
No 315
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=48.87 E-value=96 Score=28.50 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=39.8
Q ss_pred cCCcEEEEecccCCCcHH------HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKA------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a------Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
-++|+|++.|+..-..+. ..+...++|++.+...+..+. ++=|+|-.++-+.+++.+.
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS--AKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc--CCCCCCHHHHHHHHHHHHH
Confidence 379999999997542211 134566778888873354444 6778898888888877764
No 316
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=48.82 E-value=79 Score=30.20 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHH-------------HHHHHHHHHH----cCC--CeEEEcCccccCccchHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAE-------------LNAVRNAAMA----AGA--FDAVVCSHHAHGGKGAVDLGI 501 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aE-------------i~~v~~~~~~----~G~--~~~~vs~~wakGGeGa~eLA~ 501 (564)
+.++.+++++.|+++++|+..-+.+.| ++.+++.|.+ .|+ +.+.+...+..||-+-..|-+
T Consensus 98 ~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~ 177 (197)
T cd04104 98 KLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRE 177 (197)
T ss_pred HHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHH
Confidence 456677778999999999988765322 6667777763 232 224444455557778888888
Q ss_pred HHHHHhh
Q 008480 502 AVQRACE 508 (564)
Q Consensus 502 ~Vvea~e 508 (564)
.++....
T Consensus 178 ~~~~~l~ 184 (197)
T cd04104 178 TLLKDLP 184 (197)
T ss_pred HHHHHhh
Confidence 8887764
No 317
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=48.78 E-value=22 Score=29.50 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=28.0
Q ss_pred ccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 44 ~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|..||.|..+ ++++ .++|+..++|+ |-|.||||+-=.+.=+|
T Consensus 5 ~L~Nw~~f~~~-~~~~------~~~g~~tli~G----~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 5 QLVNWGSFDGE-TIDF------DPRGDVTLITG----PNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeccCccCCe-EEee------cCCCcEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 45667776662 3332 25677888887 67999999765554444
No 318
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=48.75 E-value=20 Score=38.23 Aligned_cols=32 Identities=31% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 101 ~~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~ 132 (433)
T TIGR01087 101 PLPVVAITGTN------GKTTTTSLLYHLL-KAAGLKAF 132 (433)
T ss_pred CCCEEEEECCC------CHHHHHHHHHHHH-HhcCCCeE
Confidence 35789898876 9999999999999 58888754
No 319
>PF13173 AAA_14: AAA domain
Probab=48.67 E-value=17 Score=32.29 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+|.++++| |.|.||||+.-=+++-+
T Consensus 1 n~~~~~l~G----~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTG----PRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 477889988 68999999987777666
No 320
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=48.50 E-value=34 Score=38.24 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=53.5
Q ss_pred cccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHH---------------hhHHHHHHHH
Q 008480 382 MNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---------------VNLARHIANT 446 (564)
Q Consensus 382 ~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~---------------~NL~kHIeNi 446 (564)
.+|+|-.. .|+.+ ..+|++++-.-++|. .+...|.+.+++++ .|++.-.+-+
T Consensus 131 IaL~~~s~--dp~~v--~~~Vk~V~~~~dvPL---------SIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la 197 (450)
T PRK04165 131 VALRNASG--DPEKF--AKAVKKVAETTDLPL---------ILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELA 197 (450)
T ss_pred EEEeCCCC--CHHHH--HHHHHHHHHhcCCCE---------EEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHH
Confidence 45555433 45532 455666654334432 33345555555554 4666666667
Q ss_pred hhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcC
Q 008480 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~ 487 (564)
++||+|+|+- +.| -+++..+.+.|.++|+.+.++--
T Consensus 198 ~~yg~pvVv~----~~d-l~~L~~lv~~~~~~GI~dIILDP 233 (450)
T PRK04165 198 KEYNCPLVVK----APN-LEELKELVEKLQAAGIKDLVLDP 233 (450)
T ss_pred HHcCCcEEEE----chh-HHHHHHHHHHHHHcCCCcEEECC
Confidence 8899999882 223 56777777888999997665544
No 321
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.38 E-value=1.9e+02 Score=29.64 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=81.2
Q ss_pred ehhHHHh--cCCCCCccCCCCCccc------cccccHHHHHHHHh--hHHHHHHHHhh--cCCcEEEEecccCCCcHHHH
Q 008480 401 TIRALKM--HGGGPQVVAGKPLDHA------YLNENVALVEAGCV--NLARHIANTKA--YGANVVVAVNMFATDSKAEL 468 (564)
Q Consensus 401 TvRALK~--HGG~~~~~~g~PLp~~------l~~eNl~aLe~G~~--NL~kHIeNi~~--fGvPvVVAIN~F~tDT~aEi 468 (564)
|++.++. -+|+.-..+|-|..+- ..+-+..||+.|+. .+...++.+++ ..+|+| ..=.+..=-.-=+
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~ 104 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGV 104 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhH
Confidence 4555553 3788888888766442 33457788998874 55667777775 478865 3322221000001
Q ss_pred HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-----Hh-----CCC
Q 008480 469 NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GAS 538 (564)
Q Consensus 469 ~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-----IY-----GA~ 538 (564)
+...+.|+++|+..+++-+. ..+-...+++.|.+..-.+-++..+..|.+ .|+.|+. || |..
T Consensus 105 e~f~~~~~~aGvdgviipDl-------p~ee~~~~~~~~~~~gl~~i~lv~P~T~~e-ri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADL-------PLEESGDLVEAAKKHGVKPIFLVAPNADDE-RLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred HHHHHHHHHcCCCEEEECCC-------ChHHHHHHHHHHHHCCCcEEEEECCCCCHH-HHHHHHHhCCCCEEEEECCCCC
Confidence 22344567789975444432 234566777777643223446677777764 4444444 33 444
Q ss_pred cee--eCHHHHHhhhcccc
Q 008480 539 GVE--YSEEVNASHFVPSI 555 (564)
Q Consensus 539 ~V~--~S~~A~kqL~~~e~ 555 (564)
+.. |.+...+.++....
T Consensus 177 G~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 177 GARNRAASALNELVKRLKA 195 (256)
T ss_pred CCcccCChhHHHHHHHHHh
Confidence 553 66666666655443
No 322
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=48.25 E-value=9.1 Score=34.99 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=14.8
Q ss_pred CCCCCcchhHHHHHHHH
Q 008480 81 PLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL 97 (564)
|.|.||||++.-|++.|
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 78999999988888776
No 323
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=48.21 E-value=12 Score=39.39 Aligned_cols=102 Identities=18% Similarity=0.052 Sum_probs=57.1
Q ss_pred hHHHHHHHHhh-cCCcEE-EEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 438 NLARHIANTKA-YGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 438 NL~kHIeNi~~-fGvPvV-VAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
|..+-|++... -++++- +..|+=..+ .|-+.|.++|++.|.+ ++ . -+..-+.|. .++.. ..--
T Consensus 161 NI~~~i~~~~~~g~~~l~GiI~N~r~~~--~e~~~v~~fa~~~g~~-i~-~---------~iPr~~~v~-~ae~~-~~TV 225 (273)
T PF00142_consen 161 NICKAIKNFADRGGARLGGIICNSRNVD--DEEEIVEDFAERIGTP-II-A---------FIPRSEIVQ-RAELY-GKTV 225 (273)
T ss_dssp HHHHHHHHHCTTSS-EEEEEEEE-SSST--THHHHHHHHHHHHTSE-EE-E---------EE---HHHH-HHHHC-TS-C
T ss_pred HHHHHHHHHhccCCCceEEEEecCCCCC--CchHHHHHHHHHcCCc-EE-E---------ecCchHHHH-HHHHc-CCEE
Confidence 88899999875 456665 677855544 3445689999999996 42 2 244444444 44432 2222
Q ss_pred ccCCCCCCHHHHHHHHHh-HhCCC-ceeeCHHHHHhhhccc
Q 008480 516 FLYPLDVSIKEKIDTIAR-SYGAS-GVEYSEEVNASHFVPS 554 (564)
Q Consensus 516 ~LYd~~~~I~eKIetIA~-IYGA~-~V~~S~~A~kqL~~~e 554 (564)
.=|..+....+-.+.+|+ |+... .+.-.|.-.++|..|-
T Consensus 226 ie~~P~s~~a~~yr~LA~~I~~~~~~~~P~PL~~eeL~~l~ 266 (273)
T PF00142_consen 226 IEAAPDSEQAQEYRELARKILENPEPVIPKPLSDEELEELL 266 (273)
T ss_dssp CCC-TTSHHHHHHHHHHHHHHH----B------HHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 335667778889999999 99877 5555666666665543
No 324
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=48.20 E-value=1.9e+02 Score=30.10 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHH-------HHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVR-------NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 511 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~-------~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~ 511 (564)
|++-|+..+++||+| |+.+|-.|+.+.+ ++|++.|+..+-+|+.+-.=. -.++++.|-.+.+
T Consensus 43 l~eki~la~~~~V~v------~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~--~~~~~rlI~~~~~--- 111 (237)
T TIGR03849 43 VKEKIEMYKDYGIKV------YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEIS--LEERCNLIERAKD--- 111 (237)
T ss_pred HHHHHHHHHHcCCeE------eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCC--HHHHHHHHHHHHh---
Confidence 667788899999998 6778888875543 489999998667886544321 2334444444332
Q ss_pred CCCcccC---------CCCCCHHHHHHHHHh--HhCCCceeeC
Q 008480 512 QPLKFLY---------PLDVSIKEKIDTIAR--SYGASGVEYS 543 (564)
Q Consensus 512 ~~fk~LY---------d~~~~I~eKIetIA~--IYGA~~V~~S 543 (564)
..|+.+. +...+..+.|+.+.+ --||+-|...
T Consensus 112 ~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiE 154 (237)
T TIGR03849 112 NGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIE 154 (237)
T ss_pred CCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 2344433 224678899999977 6888877654
No 325
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=48.16 E-value=10 Score=35.14 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=15.0
Q ss_pred CCCcchhHHHHHHHHh
Q 008480 83 GEGKSTTTVGLCQALG 98 (564)
Q Consensus 83 GEGKtTttIGL~qaL~ 98 (564)
|.||||+..-|++.|+
T Consensus 2 GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 8999999999999995
No 326
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=48.13 E-value=45 Score=38.16 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=40.1
Q ss_pred HhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
+++.++|+|+++|+..-..+.++. ..++++++.|++ ++.+. ++=|+|-.+|-+.+.+.+
T Consensus 95 l~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tS--A~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 LLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTS--ATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHh
Confidence 445799999999997643222222 246667788886 44322 566889999988887764
No 327
>PRK14737 gmk guanylate kinase; Provisional
Probab=48.11 E-value=18 Score=34.94 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=32.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
..+++|+++| |.|.||||+.--|.+-+- .+....-.+=|.|-.|-
T Consensus 2 ~~~~~ivl~G----psG~GK~tl~~~l~~~~~-~~~~~v~~TTR~~r~gE 46 (186)
T PRK14737 2 ASPKLFIISS----VAGGGKSTIIQALLEEHP-DFLFSISCTTRAPRPGD 46 (186)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHhcCC-ccccccCccCCCCCCCC
Confidence 3588999988 899999998888866552 34344455667777664
No 328
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=48.00 E-value=20 Score=38.23 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=40.5
Q ss_pred CHHHHHHHcCCCCcccccccCce----eeecc--hhhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 008480 30 HISEIAQELNLKPNHYDLYGKYK----AKVLL--SVLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (564)
Q Consensus 30 pI~~ia~~lgl~~~~l~~YG~~k----AKi~~--~~l~~~-~--~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~ 100 (564)
.+++|.+++|= ..+-..|... .+++. .-||.+ . .=|.|++++|.+ |.|.||||++.=++... .+
T Consensus 9 ~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G----~~GsGKTtLaL~~~~~~-~~ 81 (321)
T TIGR02012 9 ALAQIEKQFGK--GSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYG----PESSGKTTLALHAIAEA-QK 81 (321)
T ss_pred HHHHHHHHcCc--ceeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HH
Confidence 35667776664 2334444321 12332 234443 2 347899999998 56999999988766665 24
Q ss_pred cCCce
Q 008480 101 LDKKV 105 (564)
Q Consensus 101 lgk~~ 105 (564)
.|.++
T Consensus 82 ~g~~v 86 (321)
T TIGR02012 82 AGGTA 86 (321)
T ss_pred cCCcE
Confidence 34433
No 329
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=47.86 E-value=15 Score=38.46 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=65.7
Q ss_pred hHHHHHHHHhh-cCCcE-EEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 438 NLARHIANTKA-YGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 438 NL~kHIeNi~~-fGvPv-VVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
|..|-|.+..+ -|+-. =+.-|+=.. +.|.+++.++|+..|-. + +..+ .. ..++..+|-.... -
T Consensus 162 NI~kgi~k~a~~~~~rLgGiIcNsr~~--~~e~e~v~~fa~~igt~-l-i~~v---------Pr-~~ivq~aE~~~kT-v 226 (278)
T COG1348 162 NIAKGIRKYAKTGGVRLGGIICNSRSV--DRERELVEAFAERLGTQ-L-IHFV---------PR-DNIVQKAELNGKT-V 226 (278)
T ss_pred HHHHHHHHHhhcCCcceeeEEecCCCc--ccHHHHHHHHHHHhCCc-e-Eeec---------cc-hHHHHHHHHcCcc-h
Confidence 66666666655 33321 244576554 45667799999999986 3 3322 22 2445555532222 1
Q ss_pred ccCCCCCCHHHHHHHHHh-HhCCCc-eeeCHHHHHhhhccccccc
Q 008480 516 FLYPLDVSIKEKIDTIAR-SYGASG-VEYSEEVNASHFVPSILHG 558 (564)
Q Consensus 516 ~LYd~~~~I~eKIetIA~-IYGA~~-V~~S~~A~kqL~~~e~l~~ 558 (564)
.=|..+....+--+.+|+ ||.-++ |..+|....+|...-.-.|
T Consensus 227 ie~~P~s~~a~~yr~LA~~I~~n~~~vvp~pl~~eele~~~~~~~ 271 (278)
T COG1348 227 IEYAPDSNQAEEYRELAKKILENEKGVVPTPLSDEELEELLLEFG 271 (278)
T ss_pred hhhCcchhHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhc
Confidence 224466677788999999 998776 9999988887776554444
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.80 E-value=26 Score=34.69 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCce-EEEecC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~-qaL~~~lgk~~-~~~lRe 111 (564)
|.|..+||+| |.|.||||.+.=+. .++ +-|.++ ++.+-|
T Consensus 19 ~~gs~~lI~G----~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee 59 (237)
T TIGR03877 19 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE 59 (237)
T ss_pred cCCeEEEEEc----CCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC
Confidence 6799999999 88999999886543 445 347776 444554
No 331
>PRK10536 hypothetical protein; Provisional
Probab=47.64 E-value=30 Score=36.20 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCceEEEec
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVVTCLR 110 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~q-aL~~~lgk~~~~~lR 110 (564)
..+|++|| |+|.|||++++.++. +|-+. ..+-+...|
T Consensus 74 ~~lV~i~G----~aGTGKT~La~a~a~~~l~~~-~~~kIiI~R 111 (262)
T PRK10536 74 KQLIFATG----EAGCGKTWISAAKAAEALIHK-DVDRIIVTR 111 (262)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHHhcC-CeeEEEEeC
Confidence 45999988 799999999999988 44111 245555555
No 332
>PRK13948 shikimate kinase; Provisional
Probab=47.55 E-value=17 Score=35.42 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+..|+++++ .|.||||++.-|++.|+
T Consensus 8 ~~~~~I~LiG~----~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGF----MGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 45667888885 69999999988887773
No 333
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=47.55 E-value=58 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
.+-++.++++++|+.+.+|++...+.. .+.+++++++.|++
T Consensus 133 ~~~~~~l~~~~~~~~vV~N~~~~~~~~-~~~~~~~~~~~~~~ 173 (179)
T cd03110 133 ERAVELVRHFGIPVGVVINKYDLNDEI-AEEIEDYCEEEGIP 173 (179)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcch-HHHHHHHHHHcCCC
Confidence 333445566789999999998876543 34567888888886
No 334
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=47.50 E-value=49 Score=36.33 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=64.0
Q ss_pred cCCcEEEEecccCCCcHHH---HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh-cCCCCCcccCCCCCCH
Q 008480 449 YGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE-NVTQPLKFLYPLDVSI 524 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE---i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e-~~~~~fk~LYd~~~~I 524 (564)
-.-|+|++.|.-..|-.+. ++.|++++++.+..-+.+|-. .| .++.++.+ ..+..|--.+. +.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~--------~E--~eL~~l~~~~e~~~F~~~~g--~~- 271 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA--------IE--LELRELADAEEKGEFLIELG--QK- 271 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH--------HH--HHHHhCccccchhhHHHhcC--cc-
Confidence 4569999999988876554 899999999988874445521 22 12223322 22233444444 33
Q ss_pred HHHHHHHHh-HhCCCce-eeCHHHHHhhhcccccccC
Q 008480 525 KEKIDTIAR-SYGASGV-EYSEEVNASHFVPSILHGL 559 (564)
Q Consensus 525 ~eKIetIA~-IYGA~~V-~~S~~A~kqL~~~e~l~~~ 559 (564)
++.|+.+.+ .||.-++ +|=..+.+.+..|+.=.|-
T Consensus 272 ~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~ 308 (372)
T COG0012 272 ESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGS 308 (372)
T ss_pred hhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCC
Confidence 789999888 9999886 3444555777777765553
No 335
>PRK09354 recA recombinase A; Provisional
Probab=47.38 E-value=21 Score=38.64 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=42.2
Q ss_pred CHHHHHHHcCCCCcccccccCc----eeeecch--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 008480 30 HISEIAQELNLKPNHYDLYGKY----KAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (564)
Q Consensus 30 pI~~ia~~lgl~~~~l~~YG~~----kAKi~~~--~l~~~-~--~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~ 100 (564)
.|.+|-+++|=. .+-..|.. ..+++.. -||.+ . .=|.|++++|.+ |.|.||||++.-++... .+
T Consensus 14 ~~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G----~~GsGKTtLal~~~~~~-~~ 86 (349)
T PRK09354 14 ALKQIEKQFGKG--SIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYG----PESSGKTTLALHAIAEA-QK 86 (349)
T ss_pred HHHHHHHHhCCC--CceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HH
Confidence 567777777643 23444431 2234432 34443 2 247899999999 79999999998766554 24
Q ss_pred cCCce
Q 008480 101 LDKKV 105 (564)
Q Consensus 101 lgk~~ 105 (564)
.|.++
T Consensus 87 ~G~~~ 91 (349)
T PRK09354 87 AGGTA 91 (349)
T ss_pred cCCcE
Confidence 44443
No 336
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=47.32 E-value=81 Score=27.94 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=34.9
Q ss_pred hcCCcEEEEecccCCC-cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 448 AYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tD-T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
..++|++|++|+-... .+...+...+++++.++. +..+. ++=|+|-.++-+.+++
T Consensus 104 ~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~~~~~~~~ 159 (161)
T cd01863 104 NNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETS--AKTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEe--cCCCCCHHHHHHHHHH
Confidence 4789999999986432 122234456777877775 43332 3446888887777665
No 337
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=47.32 E-value=21 Score=36.31 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=25.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|-|++. .|.||||+.-.|...|. ..|.++.+.
T Consensus 3 vi~ivG~----~gsGKTtl~~~l~~~L~-~~G~~V~vi 35 (229)
T PRK14494 3 AIGVIGF----KDSGKTTLIEKILKNLK-ERGYRVATA 35 (229)
T ss_pred EEEEECC----CCChHHHHHHHHHHHHH-hCCCeEEEE
Confidence 5666664 39999999999999994 778775543
No 338
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=47.31 E-value=69 Score=28.38 Aligned_cols=56 Identities=9% Similarity=-0.092 Sum_probs=31.4
Q ss_pred hcCCcEEEEecccCCCcHHHHHHHHHHHHHc--CCCeEEEcCccccCccchHHHHHHH
Q 008480 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAA--GAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~--G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
..+.|++++.|+.......+.+.+.+.+... +-..+-+.+.=++-|+|-.++=+.+
T Consensus 98 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 98 LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 4799999999998766544444455554432 1111223233344567766654443
No 339
>PRK08084 DNA replication initiation factor; Provisional
Probab=47.12 E-value=22 Score=35.28 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=28.5
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 59 ~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
.+.+....+.+..++++| |.|.|||++..+++..+. ..|+++
T Consensus 35 ~l~~~~~~~~~~~l~l~G----p~G~GKThLl~a~~~~~~-~~~~~v 76 (235)
T PRK08084 35 ALQNALRQEHSGYIYLWS----REGAGRSHLLHAACAELS-QRGRAV 76 (235)
T ss_pred HHHHHHhCCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeE
Confidence 334433334455667666 889999999999998885 456654
No 340
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=46.94 E-value=1.6e+02 Score=32.40 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=67.2
Q ss_pred cccHHHH-HHHHhhHHHHHHHHh-hc-CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCc---ccc----Ccc-
Q 008480 426 NENVALV-EAGCVNLARHIANTK-AY-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH---HAH----GGK- 494 (564)
Q Consensus 426 ~eNl~aL-e~G~~NL~kHIeNi~-~f-GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~---wak----GGe- 494 (564)
-+|.+.+ +.|+.....++..++ +| .+|+++-| +...+++|...+.+.+++.|+. ++.=+. ... +|.
T Consensus 86 l~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi--~~~~s~~~~~~~a~~~e~~GaD-~iELNiSCPn~~~~r~~g~~ 162 (385)
T PLN02495 86 WQNIELISDRPFETMLAEFKQLKEEYPDRILIASI--MEEYNKDAWEEIIERVEETGVD-ALEINFSCPHGMPERKMGAA 162 (385)
T ss_pred ccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEc--cCCCCHHHHHHHHHHHHhcCCC-EEEEECCCCCCCCcCccchh
Confidence 3455432 456777777788886 47 57998887 2234578888888888888985 433222 222 211
Q ss_pred --chHHHHHHHHHHhhcCCCCCcccCCC-CCCHHHHHHHHHh---HhCCCceeeCHHHH
Q 008480 495 --GAVDLGIAVQRACENVTQPLKFLYPL-DVSIKEKIDTIAR---SYGASGVEYSEEVN 547 (564)
Q Consensus 495 --Ga~eLA~~Vvea~e~~~~~fk~LYd~-~~~I~eKIetIA~---IYGA~~V~~S~~A~ 547 (564)
=-.++.++|++.+.+. .. .|++-. .-.+.+ |..+|+ -.||++|.......
T Consensus 163 ~gq~~e~~~~i~~~Vk~~-~~-iPv~vKLsPn~t~-i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 163 VGQDCDLLEEVCGWINAK-AT-VPVWAKMTPNITD-ITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred hccCHHHHHHHHHHHHHh-hc-CceEEEeCCChhh-HHHHHHHHHHhCCCEEEEecccC
Confidence 1246666777666431 11 232211 111222 666666 58999999877654
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.91 E-value=22 Score=38.60 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.+.|-|||.+ |||||+-=|++.| ...|+++..
T Consensus 121 ~~~~I~VTGTn------GKTTTt~mi~~iL-~~~g~~~~~ 153 (480)
T PRK01438 121 PAPWLAVTGTN------GKTTTVQMLASML-RAAGLRAAA 153 (480)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HHcCCCeEE
Confidence 56789898875 9999999999999 488888653
No 342
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=46.87 E-value=13 Score=34.90 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|.|+|+ -|.||||.+--|.+-+ | +.+++||.
T Consensus 1 ~I~ieG~----~GsGKSTl~~~L~~~~----~---~~~~~Ep~ 32 (193)
T cd01673 1 VIVVEGN----IGAGKSTLAKELAEHL----G---YEVVPEPV 32 (193)
T ss_pred CEEEECC----CCCCHHHHHHHHHHHh----C---Cccccccc
Confidence 3566664 6999999888887654 3 34679986
No 343
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=46.84 E-value=91 Score=31.38 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=36.6
Q ss_pred CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHH
Q 008480 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 498 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~e 498 (564)
|+|+-|.+..=. =|++|+....+.|.++|+..+-.|+.|..+|.--.+
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d 164 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVED 164 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH
Confidence 899988777533 345889999999999999744578899988765443
No 344
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=46.74 E-value=14 Score=32.27 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=44.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCc---eEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHH
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKK---VVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLA 157 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~---~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLla 157 (564)
|.|.|||+++-=|+..|..+++.. .+-. |.|.--.-=|.+|- -|+=+|||.==-++- --+=.+.+-
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~~q-------~vvi~DD~~~~~~~~---~~~~~~~l~ 74 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQGQ-------PVVIIDDFGQDNDGY---NYSDESELI 74 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-CCCccchhhccCCC-------cEEEEeecCcccccc---chHHHHHHH
Confidence 449999999999999997666433 3333 77766555555532 355566654211110 001234455
Q ss_pred HHHHhhhhccc
Q 008480 158 AAIDTRIFHEA 168 (564)
Q Consensus 158 A~idn~i~~~n 168 (564)
.++|+.-|+-+
T Consensus 75 ~l~s~~~~~~~ 85 (107)
T PF00910_consen 75 RLISSNPFQPN 85 (107)
T ss_pred HHHhcCCcccc
Confidence 56666666544
No 345
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=46.73 E-value=46 Score=36.44 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=59.8
Q ss_pred ehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHh--hHHHHHHHHhhcCCcEEEE-ecccCCCcHHHHHHHHHHHHH
Q 008480 401 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMA 477 (564)
Q Consensus 401 TvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~--NL~kHIeNi~~fGvPvVVA-IN~F~tDT~aEi~~v~~~~~~ 477 (564)
+++.||-. |+.....|- +...++.++.+.||.. ...+-++.++++|+.+.+- |=-||.+|.++++...+++.+
T Consensus 289 ~l~~l~~a-G~~~v~iGi---ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 289 TLKVMKEN-GLRLLLVGY---ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHc-CCCEEEEcC---CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 45777765 555666663 6667788899988865 6677889999999986543 335899999999999999999
Q ss_pred cCCC
Q 008480 478 AGAF 481 (564)
Q Consensus 478 ~G~~ 481 (564)
.+..
T Consensus 365 l~~~ 368 (472)
T TIGR03471 365 LNPH 368 (472)
T ss_pred cCCC
Confidence 9875
No 346
>PHA02096 hypothetical protein
Probab=46.67 E-value=16 Score=32.63 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred cccHHHHHHHHhhHHHHHHHHhh--cCCcEEEEeccc
Q 008480 426 NENVALVEAGCVNLARHIANTKA--YGANVVVAVNMF 460 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~--fGvPvVVAIN~F 460 (564)
.-|+..-++.++...+--.-+++ ||.|.+|+||+=
T Consensus 39 ~~~~~~ak~~i~eylkgt~vikkrlfg~ptiv~inkp 75 (103)
T PHA02096 39 DVSLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNKP 75 (103)
T ss_pred hhHHHHHHHHHHHHhcccchhhhhhcCCCeEEEecCc
Confidence 34555555555555555455555 999999999984
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=46.61 E-value=18 Score=37.56 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
||++|| +-|.||||.+--|++.|.
T Consensus 3 LiIlTG----yPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTG----YPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEec----CCCCCchHHHHHHHHHHH
Confidence 788888 469999999999999995
No 348
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=46.53 E-value=52 Score=28.60 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHhhcCCc-EEEEecccCCCcHHHHHHHHHH
Q 008480 436 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNA 474 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvP-vVVAIN~F~tDT~aEi~~v~~~ 474 (564)
+....+-++.+++.|+| ++..+=-++.+|++|++.+.++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 34666777888889999 7777778999999999877765
No 349
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=46.53 E-value=1e+02 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCC-------CCeEEeecccccccccccccccccccCCCCcceEEEEeehh
Q 008480 349 SIVADKIALKLVGP-------GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 403 (564)
Q Consensus 349 SiiAtk~ALklag~-------~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvR 403 (564)
|.++..+|..|+.. +||++.+.+.+.+..... |+..-..+|.+++|.+..
T Consensus 13 tt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 13 TTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence 55666666666522 289999999888765433 667777889999988554
No 350
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=46.53 E-value=18 Score=35.30 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
+++.|++|-..|..+++++.+-|..+|| |..-|++.++.|-+.+.+.+.+
T Consensus 10 ~l~~v~~g~~~l~~~l~~~~~~g~~ivV----~Da~t~~DL~~ia~a~~~~~~~ 59 (223)
T PF07005_consen 10 DLEDVRRGPEALSAALAALQAEGARIVV----FDAETDEDLDAIAEALLELGRR 59 (223)
T ss_dssp -HHHHCC-HHHHHHHHHHHHHTTECEEE----E-BSSCHHHHHHHHHCTT-S--
T ss_pred EHHHHhCcHHHHHHHHHHHHhCCCcEEE----EecCCHHHHHHHHHHHHhCCCc
Confidence 6788999999999999999999999999 8999999999999998877765
No 351
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=46.42 E-value=11 Score=37.39 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=17.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+|.|| -|| |.||||++-=|. .+|.+.+
T Consensus 2 ~I~IT---GTP-GvGKTT~~~~L~-----~lg~~~i 28 (180)
T COG1936 2 LIAIT---GTP-GVGKTTVCKLLR-----ELGYKVI 28 (180)
T ss_pred eEEEe---CCC-CCchHHHHHHHH-----HhCCcee
Confidence 45555 466 999999886664 4566644
No 352
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=46.39 E-value=91 Score=28.53 Aligned_cols=63 Identities=8% Similarity=-0.059 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHH-HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi-~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.|.+... ++|+|++.|+.... +.++ ....++++..+.. +. +.=++=|+|-.++-+.+++.+-
T Consensus 96 ~~i~~~~~-~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 96 RDLVRVCG-NIPIVLCGNKVDIK-DRKVKAKQITFHRKKNLQ-YY--EISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHhCC-CCcEEEEEEchhcc-cccCCHHHHHHHHHcCCE-EE--EEeCCCCCChHHHHHHHHHHHH
Confidence 33433333 89999999998754 2222 2334556655543 32 3345557888887777775553
No 353
>PRK06526 transposase; Provisional
Probab=46.38 E-value=12 Score=38.06 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=26.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
++-|+++| |.|.|||+++++|+..+. +.|+++.
T Consensus 98 ~~nlll~G----p~GtGKThLa~al~~~a~-~~g~~v~ 130 (254)
T PRK06526 98 KENVVFLG----PPGTGKTHLAIGLGIRAC-QAGHRVL 130 (254)
T ss_pred CceEEEEe----CCCCchHHHHHHHHHHHH-HCCCchh
Confidence 44577777 669999999999999884 6787753
No 354
>PRK06217 hypothetical protein; Validated
Probab=46.35 E-value=14 Score=34.97 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=17.7
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+|+| +.|.||||++--|++.|
T Consensus 4 I~i~G----~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITG----ASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHc
Confidence 77777 46999999888887766
No 355
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=46.35 E-value=27 Score=37.19 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
++-|||+| |-|.||||+.-.|.+.+.......-++++-+|.
T Consensus 144 ~~nilI~G----~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 144 RLNIVISG----GTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 56789998 569999999999998873222334566666543
No 356
>PRK09183 transposase/IS protein; Provisional
Probab=46.27 E-value=28 Score=35.46 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
..|.-|+++| |.|.||||++.+|+..+. .-|+++.
T Consensus 100 ~~~~~v~l~G----p~GtGKThLa~al~~~a~-~~G~~v~ 134 (259)
T PRK09183 100 ERNENIVLLG----PSGVGKTHLAIALGYEAV-RAGIKVR 134 (259)
T ss_pred hcCCeEEEEe----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3466677777 669999999999988874 5676653
No 357
>PRK04213 GTP-binding protein; Provisional
Probab=46.25 E-value=1.1e+02 Score=28.58 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC--------eEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--------DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~--------~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.++..++|++|++|+..-.... -+.+.+++++.|.. .+..+. |+=| |-.+|-+.+.+.+.
T Consensus 123 ~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S--A~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 123 FDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPIS--AKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEe--cccC-CHHHHHHHHHHhhc
Confidence 334455799999999998753322 23445556666651 123333 3335 77777777776553
No 358
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=46.23 E-value=75 Score=30.51 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCC-cEEEEecccCCCcHHHH----HHHHHHHHHc---CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 440 ARHIANTKAYGA-NVVVAVNMFATDSKAEL----NAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 440 ~kHIeNi~~fGv-PvVVAIN~F~tDT~aEi----~~v~~~~~~~---G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..|+..++.+++ |+||++|+..-..++++ +.++++++.. ++. ++.. =++=|+|-.+|-+.+.+.+.
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~-i~~v--SA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAP-IIPI--SAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCc-EEEE--eCCCCCCHHHHHHHHHHhCC
Confidence 345556666776 58899999876655554 3444544432 343 2222 24556777777777666553
No 359
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=46.03 E-value=74 Score=28.07 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=39.9
Q ss_pred HhhHHHHHHHHhh-cC--CcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 436 CVNLARHIANTKA-YG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 436 ~~NL~kHIeNi~~-fG--vPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
+.++...++.++. .+ +|+++++|+-.-.... -.+.+...+++.++. +. ..=++=|+|-.+|-+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FI--ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EE--EEeCCCCCCHHHHHHHHHH
Confidence 4455555555543 44 9999999987662221 223345566666764 32 3335667777777776654
No 360
>PRK01184 hypothetical protein; Provisional
Probab=45.93 E-value=15 Score=34.34 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQ 111 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRe 111 (564)
++|++|| |-|.||||.+. ++ .++|...+.+ +|+
T Consensus 2 ~~i~l~G----~~GsGKsT~a~-~~----~~~g~~~i~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVG----MPGSGKGEFSK-IA----REMGIPVVVMGDVIRE 37 (184)
T ss_pred cEEEEEC----CCCCCHHHHHH-HH----HHcCCcEEEhhHHHHH
Confidence 3677787 57999999865 43 3556666654 565
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.77 E-value=13 Score=44.47 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.9
Q ss_pred cchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 56 LLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 56 ~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
...+++++.+-++.|++|++| |+|-||||...-+..
T Consensus 24 R~rL~~~L~~~~~~RL~li~A----PAGfGKttl~aq~~~ 59 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISA----PAGFGKTTLLAQWRE 59 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeC----CCCCcHHHHHHHHHH
Confidence 356777887778999999987 999999999877755
No 362
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=45.62 E-value=17 Score=38.38 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=28.7
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 008480 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (564)
Q Consensus 76 aitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iN 139 (564)
||-- |-|.|||||+-=|..+|+ +-+.... .|++|||-|-
T Consensus 86 giaG-svavGKST~ar~L~~ll~-~~~~~~~-----------------------v~lvpmDGFh 124 (283)
T COG1072 86 GIAG-SVAVGKSTTARILQALLS-RWPESPK-----------------------VDLVTMDGFH 124 (283)
T ss_pred Eecc-CccccHHHHHHHHHHHHh-hCCCCCc-----------------------eEEEeccccc
Confidence 4433 458999999999988884 6555432 4999999764
No 363
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=45.48 E-value=23 Score=41.40 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lg 102 (564)
.++++||| ++|.||||+...+.+++. ..|
T Consensus 338 ~~~~iitG----gpGTGKTt~l~~i~~~~~-~~~ 366 (720)
T TIGR01448 338 HKVVILTG----GPGTGKTTITRAIIELAE-ELG 366 (720)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHH-HcC
Confidence 56888887 789999999999999994 666
No 364
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=45.22 E-value=17 Score=38.72 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=30.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
.+|-|-- =|=-|.|||++++-|++.| ...|.+..+.-|
T Consensus 50 pvIsVGN--i~vGGtGKTP~v~~L~~~l-~~~g~~~~ilsR 87 (325)
T PRK00652 50 PVIVVGN--ITVGGTGKTPVVIALAEQL-QARGLKPGVVSR 87 (325)
T ss_pred CEEEEcC--eeCCCCChHHHHHHHHHHH-HHCCCeEEEECC
Confidence 3555543 4567999999999999999 578999888877
No 365
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=45.20 E-value=24 Score=32.92 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
|-|.||||++.-|+..+ ...|.+..+.-=.|+
T Consensus 7 ~~GsGKTt~~~~l~~~~-~~~g~~v~ii~~D~~ 38 (148)
T cd03114 7 VPGAGKSTLIDALITAL-RARGKRVAVLAIDPS 38 (148)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCEEEEEEeCCC
Confidence 57999999999999999 477888877666653
No 366
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=45.16 E-value=24 Score=36.57 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=25.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
.|-|++- -|.||||+..-|...|. +.| + ++.+--
T Consensus 3 ~i~i~G~----~gSGKTTLi~~Li~~L~-~~G-~-V~~IKh 36 (274)
T PRK14493 3 VLSIVGY----KATGKTTLVERLVDRLS-GRG-R-VGTVKH 36 (274)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-hCC-C-EEEEEE
Confidence 4555543 39999999999999994 779 4 555554
No 367
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=45.15 E-value=15 Score=40.73 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=25.1
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 77 itPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
||-|..+.|||++|.||++.| ++.|.++.
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l-~~~G~~v~ 31 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRIL-ARRGYRVA 31 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEE
Confidence 455788999999999999999 58898866
No 368
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=45.10 E-value=1.6e+02 Score=26.58 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCcEEEEecccCCCcHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 450 GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++|+|++.|+.....+.+ .+-.++++++.+...++.|. ++=|+|-.+|-+.+++.
T Consensus 105 ~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 105 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS--AKTKEGVREVFEMATRA 173 (175)
T ss_pred CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec--cccCcCHHHHHHHHHHH
Confidence 799999999876422111 12234455555543333333 45556766666665543
No 369
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.07 E-value=23 Score=38.05 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.+.|-||+.+ ||||||-=|++.| .+.|+++..
T Consensus 108 ~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~ 139 (448)
T PRK03803 108 APVIAITGSN------GKSTVTTLVGEMA-KAAGKRVAV 139 (448)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 5789999886 9999999999999 588986554
No 370
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=45.03 E-value=1e+02 Score=27.10 Aligned_cols=56 Identities=18% Similarity=0.060 Sum_probs=36.2
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.+.|+|++.|+-....+. ..+..++++++.+.. +.. .=++-|+|-.++-+.+++.+
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFE--TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEE--EECCCCCCHHHHHHHHHHHH
Confidence 568999999997654211 233345677877865 332 23455888888887776543
No 371
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=44.50 E-value=41 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCc-EEEEecccCCC
Q 008480 439 LARHIANTKAYGAN-VVVAVNMFATD 463 (564)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAIN~F~tD 463 (564)
-.+|+..++.+|+| +||++|+....
T Consensus 121 t~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 121 TRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cHHHHHHHHHcCCCcEEEEEEecccc
Confidence 34688888888886 78899997653
No 372
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=44.43 E-value=23 Score=34.23 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=29.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCce-EEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~-qaL~~~lgk~~-~~~lRePS 113 (564)
|.|..+||+| |.|.|||+.+.-+. .++ ...|.++ ++++-||.
T Consensus 17 p~gs~~li~G----~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISG----PPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-H
T ss_pred CCCcEEEEEe----CCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCH
Confidence 6799999998 68999999998855 555 2337776 55666665
No 373
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=44.41 E-value=97 Score=32.95 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHhhcCCcEEEEecccCCC-cHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tD-T~aEi~~v~~~~~~~-----G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+..+.+.|.|+||++|+..-. .+++.+.+++..++. +++ ++.+ =|+=|.|-.+|-+.+.+..+
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-vi~~--SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP-IVFI--SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc-eEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 444566899999999998754 556666666555432 233 3333 34557888888777777664
No 374
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=44.34 E-value=1.6e+02 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=37.2
Q ss_pred HhhcCCcEEEEecccCCCcHHHHHHHH----HHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 446 TKAYGANVVVAVNMFATDSKAELNAVR----NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~~v~----~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++.+++|+++++|+....+..|.+.+. +........ +. ..=+.-|+|..++-+.+.+.+
T Consensus 131 l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~-~~--~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 131 LKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE-VI--LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc-eE--EEEcCCCCCHHHHHHHHHHHh
Confidence 456899999999998876666655433 333332343 32 223556778777777766654
No 375
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.32 E-value=26 Score=38.64 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=25.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.++|-||+.+ ||||||-=|.+.| ...|+++..
T Consensus 117 ~~vIgITGTn------GKTTTt~li~~iL-~~~g~~~~~ 148 (488)
T PRK03369 117 RRWLVVTGTN------GKTTTTSMLHAML-IAAGRRSVL 148 (488)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCceEE
Confidence 4688888875 9999999999999 478876543
No 376
>PRK04328 hypothetical protein; Provisional
Probab=44.19 E-value=32 Score=34.58 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCce-EEEecC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~-qaL~~~lgk~~-~~~lRe 111 (564)
|.|..+||++ |.|.||||.+.=+. .++ +-|.++ ++.+.|
T Consensus 21 p~gs~ili~G----~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeC
Confidence 6799999999 88999999987644 455 347775 444544
No 377
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=44.17 E-value=19 Score=38.65 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
..++-|||+| |-|.||||+.-.|.+.+. . .. -++++-+|
T Consensus 160 ~~~~nilI~G----~tGSGKTTll~aLl~~i~-~-~~-rivtiEd~ 198 (344)
T PRK13851 160 VGRLTMLLCG----PTGSGKTTMSKTLISAIP-P-QE-RLITIEDT 198 (344)
T ss_pred HcCCeEEEEC----CCCccHHHHHHHHHcccC-C-CC-CEEEECCC
Confidence 3578899998 569999999999988774 2 22 34555544
No 378
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=44.14 E-value=24 Score=35.37 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCceEEEecCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~-qaL~~~lgk~~~~~lRePS 113 (564)
-++|.++| |+|.|||.+++..+ +.+. .-..+-++..|.+.
T Consensus 19 ~~~v~~~G----~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 19 NDLVIVNG----PAGTGKTFLALAAALELVK-EGEYDKIIITRPPV 59 (205)
T ss_dssp -SEEEEE------TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S-
T ss_pred CCeEEEEC----CCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCC
Confidence 34777776 89999999998776 3442 33346677888765
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=44.05 E-value=92 Score=31.41 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHH--HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi--~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
+|.+.+..++..++|+|+++|+-.-.++.++ +++..++ +.|.. +.. .=++-|+|-.+|-+.+
T Consensus 55 ~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~-v~~--~SAktg~gi~eLf~~l 118 (245)
T TIGR00157 55 QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ-VLM--TSSKNQDGLKELIEAL 118 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe-EEE--EecCCchhHHHHHhhh
Confidence 4566666666789999999999775333333 4455444 47775 332 2245577766665543
No 380
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=43.93 E-value=33 Score=34.37 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=91.6
Q ss_pred CHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCc--CccceecCceeEEeccccchhcccCchHHHHHHH
Q 008480 279 SLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINP--TLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIA 356 (564)
Q Consensus 279 ~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikP--NLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~A 356 (564)
++.+|| .|.+|. .+|+-+|+.|.-- .=|.+.++- -|=+.|+|.+ +.|+||--+-
T Consensus 12 ~i~~Lk--vGd~v~---lsG~I~t~RD~AH-----~ri~e~~~~ge~lP~dl~g~~-Iy~aGP~~~~------------- 67 (184)
T COG1838 12 EIAKLK--VGDVVY---LSGKIVTGRDAAH-----KRLLEMLDRGEELPVDLKGHI-IYYAGPVKTK------------- 67 (184)
T ss_pred HHHhcc--CCCEEE---EeeEEEEehhHHH-----HHHHHHHhcCCCCCccCCCCE-EEEeccccCC-------------
Confidence 344554 666654 5899999998533 334444420 1127777876 5699997543
Q ss_pred HhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEe-------ehhHHHhcCCCCCccCCC--CC-ccccc-
Q 008480 357 LKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA-------TIRALKMHGGGPQVVAGK--PL-DHAYL- 425 (564)
Q Consensus 357 Lklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVa-------TvRALK~HGG~~~~~~g~--PL-p~~l~- 425 (564)
.+|+|--+|-=+..=+++|.+.---..|+ -++|. |++|+|=||++....+|- .| -+..+
T Consensus 68 ------~~~~v~s~GPTTs~RMd~~~~~~l~~~G~----~~~iGKG~~~~~~~ea~~~~kavyl~~~gGaA~L~a~~IK~ 137 (184)
T COG1838 68 ------DGWVVGSAGPTTSGRMDKFTDELLEQTGV----LAMIGKGGRGPETVEACKKHKAVYLVAPGGAAALAAKSIKS 137 (184)
T ss_pred ------CCceeeccCCcchhhhhhhHHHHHHhcCe----EEEEecCCcCHHHHHHHHHcCeEEEEccchHHHHHHHhhhh
Confidence 39999999999999999998865544443 23332 789999999877655551 00 00011
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHH
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELN 469 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~ 469 (564)
.+++...+-|++-+ +++| ++.| |++|+|-..-.+--+|..
T Consensus 138 ~~~v~~~dLGmEAi-w~le-Ve~f--PliV~iDs~Gn~~~~~~~ 177 (184)
T COG1838 138 VRCVAYEDLGMEAI-WELE-VEDF--PLIVAIDSKGNSLFKEGP 177 (184)
T ss_pred eeeEeecccChhhe-eEEE-eccc--cEEEEEeCCCcChhhhcc
Confidence 22333333344111 1111 3345 999999776666555554
No 381
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.77 E-value=1.8e+02 Score=29.48 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=27.1
Q ss_pred ccccccccHHHHHHHHhhHHHHHHHHhh--cCCcEEEE
Q 008480 421 DHAYLNENVALVEAGCVNLARHIANTKA--YGANVVVA 456 (564)
Q Consensus 421 p~~l~~eNl~aLe~G~~NL~kHIeNi~~--fGvPvVVA 456 (564)
-+++-++|.+.+.+-+.+|.+-++.... -+.++|+.
T Consensus 122 ~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~ 159 (264)
T cd01020 122 NKKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAAT 159 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3566778999999999999999988744 34555553
No 382
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.65 E-value=15 Score=36.90 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~~~lg 102 (564)
|+++| |.|.||||++..++..|. .+|
T Consensus 45 vll~G----ppGtGKTtlA~~ia~~l~-~~~ 70 (261)
T TIGR02881 45 MIFKG----NPGTGKTTVARILGKLFK-EMN 70 (261)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHHH-hcC
Confidence 45555 889999999999999883 554
No 383
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=43.63 E-value=97 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=31.1
Q ss_pred HhhcCC-cEEEEecccCCCcHHH----HHHHHHHHHH---cCCCeEEEcCccccCccchHHHHHHH
Q 008480 446 TKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 446 i~~fGv-PvVVAIN~F~tDT~aE----i~~v~~~~~~---~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
++..+. |+++++|+..-..+.+ .+.+.++++. .+.+ +..+. ++-|+|-.+|-+.+
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l 161 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP-IFPVS--AVTGEGIEELKEYL 161 (164)
T ss_pred HHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEe--CCCCcCHHHHHHHH
Confidence 444566 9999999986544432 2344455554 2343 33332 56667766655443
No 384
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=43.61 E-value=22 Score=35.42 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
..|.+++. |+-|-||||.++|++... ...|.++.+
T Consensus 21 ~~g~v~v~-----~g~GkGKtt~a~g~a~ra-~g~G~~V~i 55 (191)
T PRK05986 21 EKGLLIVH-----TGNGKGKSTAAFGMALRA-VGHGKKVGV 55 (191)
T ss_pred cCCeEEEE-----CCCCCChHHHHHHHHHHH-HHCCCeEEE
Confidence 45766665 568999999999998766 356887654
No 385
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=43.43 E-value=58 Score=31.67 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCC-CcHHHHH----HHHHHHHHcCC
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFAT-DSKAELN----AVRNAAMAAGA 480 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~t-DT~aEi~----~v~~~~~~~G~ 480 (564)
...+|+..++++|+| +||++|+..- +.++-.+ .+++..++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 356789999999998 7799999864 3232233 34455555554
No 386
>PRK08939 primosomal protein DnaI; Reviewed
Probab=43.43 E-value=34 Score=35.95 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=43.5
Q ss_pred CHHHHHHHcCCCC----cccccccCc-----eee-ecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh
Q 008480 30 HISEIAQELNLKP----NHYDLYGKY-----KAK-VLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA 99 (564)
Q Consensus 30 pI~~ia~~lgl~~----~~l~~YG~~-----kAK-i~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~ 99 (564)
-+...-+..+++. -.++.|... .+. .-.+++++....+.+|=++++| |.|.|||..+.+++..|.
T Consensus 107 ~~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G----~~G~GKThLa~Aia~~l~- 181 (306)
T PRK08939 107 AIKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYG----DFGVGKSYLLAAIANELA- 181 (306)
T ss_pred HHHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-
Confidence 4555566777775 234444321 111 1123444443323456677776 679999999999999995
Q ss_pred hcCCceE
Q 008480 100 FLDKKVV 106 (564)
Q Consensus 100 ~lgk~~~ 106 (564)
..|+++.
T Consensus 182 ~~g~~v~ 188 (306)
T PRK08939 182 KKGVSST 188 (306)
T ss_pred HcCCCEE
Confidence 7787764
No 387
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=43.42 E-value=23 Score=40.41 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR 110 (564)
+.+++|++|+.. |+||||.+-.|++.|. ..|. ....|+
T Consensus 458 ~~~~~i~~~G~~----gsGKst~a~~l~~~l~-~~~~-~~~~l~ 495 (632)
T PRK05506 458 QKPATVWFTGLS----GSGKSTIANLVERRLH-ALGR-HTYLLD 495 (632)
T ss_pred CCcEEEEecCCC----CchHHHHHHHHHHHHH-HcCC-CEEEEc
Confidence 458999999974 9999999999999984 3343 344454
No 388
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=43.33 E-value=27 Score=36.07 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=63.8
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHH
Q 008480 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (564)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHI 443 (564)
||++--+|=|...-.=.|+ +.-|.+|+|+|- ...++. |=-+=+
T Consensus 114 D~iliD~~aGl~~~~~~~~--------~~sd~~viVt~p-------------------------e~~si~----~A~~~i 156 (262)
T COG0455 114 DYILIDTGAGLSRDTLSFI--------LSSDELVIVTTP-------------------------EPTSIT----DAYKTI 156 (262)
T ss_pred CEEEEeCCCCccHHHHHHH--------HhcCcEEEEeCC-------------------------CcchHH----HHHHHH
Confidence 8888777655543333332 223888998841 112222 233446
Q ss_pred HHHhhcCCcEE---EEecccC--CCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 444 ANTKAYGANVV---VAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 444 eNi~~fGvPvV---VAIN~F~--tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
++++++|.+.. |.+|+-. .|-.+=.+.+.+.+++--...++.... .|.+++..+ .+|- +|
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-------------~v~~a~~~g-~p~~-~~ 221 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP-------------EVRRALAEG-KPIV-LY 221 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccCh-------------HHHHHhhcC-CcEE-Ee
Confidence 77788887753 8999985 443333334444444221111122211 555555432 3343 34
Q ss_pred CCCCCHHHHHHHHHh
Q 008480 519 PLDVSIKEKIDTIAR 533 (564)
Q Consensus 519 d~~~~I~eKIetIA~ 533 (564)
.++.+....|..||.
T Consensus 222 ~p~s~as~ai~~lA~ 236 (262)
T COG0455 222 SPNSKASQAIKELAA 236 (262)
T ss_pred CCCCHHHHHHHHHHH
Confidence 677888888888887
No 389
>COG1159 Era GTPase [General function prediction only]
Probab=43.27 E-value=1.4e+02 Score=32.03 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=59.6
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHH-HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCC
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aE-i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd 519 (564)
.-++.+++-..|++++||+-..-++++ +..+.++.++..-+ ..+-..=|.-|++-..|.+.+.+...+++ +.||
T Consensus 105 ~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f-~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~----~~yp 179 (298)
T COG1159 105 FILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF-KEIVPISALKGDNVDTLLEIIKEYLPEGP----WYYP 179 (298)
T ss_pred HHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc-ceEEEeeccccCCHHHHHHHHHHhCCCCC----CcCC
Confidence 445666666679999999876444444 44555555544443 23444558899999999999998886432 3454
Q ss_pred C----CCCHHHHHHHHHh--HhC
Q 008480 520 L----DVSIKEKIDTIAR--SYG 536 (564)
Q Consensus 520 ~----~~~I~eKIetIA~--IYG 536 (564)
. +.|-+-.+..|-| +|-
T Consensus 180 ~d~itD~~~rf~~aEiiREk~~~ 202 (298)
T COG1159 180 EDQITDRPERFLAAEIIREKLLL 202 (298)
T ss_pred hhhccCChHHHHHHHHHHHHHHH
Confidence 4 4677777766666 554
No 390
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=43.11 E-value=29 Score=34.59 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce-EEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~-~~~lReP 112 (564)
|.|+.+||++ +.|.|||+.+.-..-... +-|.++ .++++|+
T Consensus 21 p~g~~~lI~G----~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITG----PPGTGKTIFALQFLYEGA-REGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEc----CCCCcHHHHHHHHHHHHH-hcCCcEEEEEecCC
Confidence 7799999999 679999999987766663 458775 5667764
No 391
>PRK07952 DNA replication protein DnaC; Validated
Probab=43.08 E-value=20 Score=36.53 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=24.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
-+++++ |.|.|||+++.+++..|. +.|++++.
T Consensus 101 ~~~l~G----~~GtGKThLa~aia~~l~-~~g~~v~~ 132 (244)
T PRK07952 101 SFIFSG----KPGTGKNHLAAAICNELL-LRGKSVLI 132 (244)
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 456655 669999999999999994 66776543
No 392
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.03 E-value=1.5e+02 Score=29.22 Aligned_cols=87 Identities=21% Similarity=0.112 Sum_probs=51.7
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecccC-C-CcHHH--------HHHHHHHHHHcCCCeEEEcC--ccccCcc--chHHHH
Q 008480 435 GCVNLARHIANTKAYGANVVVAVNMFA-T-DSKAE--------LNAVRNAAMAAGAFDAVVCS--HHAHGGK--GAVDLG 500 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAIN~F~-t-DT~aE--------i~~v~~~~~~~G~~~~~vs~--~wakGGe--Ga~eLA 500 (564)
-..+++++|+..+.+|.++|+...-.. . .+.+| ++.+.+.|++.|+. +.+-. +|...+. ...+-+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~~~l~t~~~~ 160 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPGFFLTTTEQA 160 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCCChhcCHHHH
Confidence 346889999999999999887643222 1 12233 45566677888996 66653 3432222 122333
Q ss_pred HHHHHHhhcCCCCCcccCCCCCCH
Q 008480 501 IAVQRACENVTQPLKFLYPLDVSI 524 (564)
Q Consensus 501 ~~Vvea~e~~~~~fk~LYd~~~~I 524 (564)
..+++.+. +.++..+||.-.-.
T Consensus 161 ~~li~~v~--~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 161 LAVIDDVG--RENLKLQYDLYHMQ 182 (254)
T ss_pred HHHHHHhC--CCCEeEeeehhhhh
Confidence 34555553 34688888775433
No 393
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.97 E-value=2.6e+02 Score=25.45 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=42.8
Q ss_pred cCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccC------
Q 008480 388 YSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA------ 461 (564)
Q Consensus 388 ~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~------ 461 (564)
....+||.|||.. |......+ .-..+...+++..|..+|... .-+.++|+.- -.+
T Consensus 52 l~~~~pd~Vii~~---------G~ND~~~~--------~~~~~~~~~~~~~li~~i~~~-~~~~~iv~~~-~~~~~~~~~ 112 (189)
T cd01825 52 LAALPPDLVILSY---------GTNEAFNK--------QLNASEYRQQLREFIKRLRQI-LPNASILLVG-PPDSLQKTG 112 (189)
T ss_pred HhhCCCCEEEEEC---------CCcccccC--------CCCHHHHHHHHHHHHHHHHHH-CCCCeEEEEc-CCchhccCC
Confidence 3467899988866 43321111 123567777777777766543 1356665542 111
Q ss_pred -------CCcHHHHHHHHHHHHHcCCC
Q 008480 462 -------TDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 462 -------tDT~aEi~~v~~~~~~~G~~ 481 (564)
...++-.+.+++.|++.|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~a~~~~v~ 139 (189)
T cd01825 113 AGRWRTPPGLDAVIAAQRRVAKEEGIA 139 (189)
T ss_pred CCCcccCCcHHHHHHHHHHHHHHcCCe
Confidence 11123446788999999985
No 394
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=42.93 E-value=20 Score=37.57 Aligned_cols=53 Identities=36% Similarity=0.368 Sum_probs=32.2
Q ss_pred hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCC
Q 008480 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (564)
Q Consensus 58 ~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSl 114 (564)
++|+++.. ..|+- .|-+||-+| |.||||+.--|+..|. .-|+++.+--=.||-
T Consensus 17 ~ll~~l~~-~~g~a-~~iGiTG~P-GaGKSTli~~l~~~~~-~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 17 ELLKRLYP-HTGRA-HVIGITGPP-GAGKSTLIDALIRELR-ERGKRVAVLAVDPSS 69 (266)
T ss_dssp HHHHHHGG-GTT-S-EEEEEEE-T-TSSHHHHHHHHHHHHH-HTT--EEEEEE-GGG
T ss_pred HHHHHHHh-hcCCc-eEEEeeCCC-CCcHHHHHHHHHHHHh-hcCCceEEEEECCCC
Confidence 34555432 12342 244666655 9999999999999995 679887666656664
No 395
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=42.89 E-value=11 Score=37.03 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=19.1
Q ss_pred CCCCCceeeeeccccccccccceeec
Q 008480 223 DIDPASITWRRVMDVNDRFLRKITIG 248 (564)
Q Consensus 223 ~IDp~~I~w~Rv~D~NDR~LR~I~iG 248 (564)
+.+.+-|...++.+-+.-.||+|+..
T Consensus 88 ~~~~r~VaL~fv~~~~~~~i~~it~~ 113 (168)
T PF08303_consen 88 DTNVRFVALNFVHDDDLDEIRRITQD 113 (168)
T ss_pred CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 45667777777887777788888754
No 396
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.75 E-value=19 Score=39.42 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.-|+||++| |-|.|||+.--+|+|-|.
T Consensus 176 ~NRliLlhG----PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHG----PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeC----CCCCChhHHHHHHHHhhe
Confidence 367999987 889999999999999985
No 397
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=42.66 E-value=1.7e+02 Score=29.04 Aligned_cols=173 Identities=19% Similarity=0.218 Sum_probs=88.2
Q ss_pred ccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHH--HhcCCCCCccCC-----
Q 008480 345 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRAL--KMHGGGPQVVAG----- 417 (564)
Q Consensus 345 hG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRAL--K~HGG~~~~~~g----- 417 (564)
|.-.---.|...|+-| |.+|+= | +|.|.|++ |-..+...++..|+ .....+ ..|+.-|-.-..
T Consensus 33 H~~~~~p~d~~~l~~A---dlvv~~-G----~~~e~~l~-~~~~~~~~~~~~~i-~~~~~~~~~~~~~npH~Wldp~~~~ 102 (256)
T PF01297_consen 33 HDYEPTPSDIKKLQKA---DLVVYN-G----LGLEPWLE-KLLESSQNPKVKVI-DLSEGIDLDHHGHNPHVWLDPENAK 102 (256)
T ss_dssp TT----HHHHHHHHHS---SEEEES------TTTSCCHH-HHHHTTTTTTTEEE-ETTTTS-GSTTCBESTGGGSHHHHH
T ss_pred ccccCChHHHHHHHhC---CEEEEe-C----Cccchhhh-hhhhcccccccceE-EeecccccccCCCCCchHHHHHHHH
Confidence 5555556777788888 888762 2 34444433 22233344443333 333433 223332210000
Q ss_pred -------------CCCccccccccHHHHHHHHhhHHHHHHHHh--------------------hcCCcEEEEe--cccCC
Q 008480 418 -------------KPLDHAYLNENVALVEAGCVNLARHIANTK--------------------AYGANVVVAV--NMFAT 462 (564)
Q Consensus 418 -------------~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~--------------------~fGvPvVVAI--N~F~t 462 (564)
.|--.++-++|.+.+.+-+..|.+.++... .||+.++-.+ +.=..
T Consensus 103 ~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ 182 (256)
T PF01297_consen 103 KMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEE 182 (256)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEESSSSSSS
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeeeccccccC
Confidence 223346667788888888888888877542 3555555555 34444
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCccc---CCCCCCHHHHHHHHHh
Q 008480 463 DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL---YPLDVSIKEKIDTIAR 533 (564)
Q Consensus 463 DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~L---Yd~~~~I~eKIetIA~ 533 (564)
=|.+++..+.+.+++.++. +++++.+... .+++.+.+.+.-+--.+.++ .+...+..+-++..+.
T Consensus 183 ps~~~l~~l~~~ik~~~v~-~i~~e~~~~~-----~~~~~la~~~g~~vv~ld~l~~~~~~~~~y~~~~~~n~~ 250 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVK-CIFTEPQFSS-----KLAEALAKETGVKVVYLDPLGGGIPDGDSYLDMMEQNLD 250 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-S-EEEEETTS-T-----HHHHHHHHCCT-EEEESSTTCSTTSSTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhcCCc-EEEecCCCCh-----HHHHHHHHHcCCcEEEeCCCcCCCCCcCCHHHHHHHHHH
Confidence 5788888888888888886 7777766543 24444432221000013333 2234466666666555
No 398
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=42.61 E-value=96 Score=27.44 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=36.5
Q ss_pred cCCcEEEEecccCCC--cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tD--T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.++|+||++|+-.-- .+.+.+.+.+++++.++. +..+. ++=|+|-.++-+.+++.
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETS--AKTGENVNELFTEIAKK 161 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHH
Confidence 469999999986532 222345567788888865 44333 44577888888777654
No 399
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.58 E-value=83 Score=32.87 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEE
Q 008480 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~v 485 (564)
+....+.|+.++++|+++.|... ...++.+|++.+.+++++.|+..+.+
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFV-IHRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45556677888889999876554 34678899999999999999975544
No 400
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.41 E-value=2.1e+02 Score=30.39 Aligned_cols=106 Identities=20% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecccC----CCcHHHHHHHHHHHHHcCCCeEEEcCcc---ccCc------cchHHHHH
Q 008480 435 GCVNLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFDAVVCSHH---AHGG------KGAVDLGI 501 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAIN~F~----tDT~aEi~~v~~~~~~~G~~~~~vs~~w---akGG------eGa~eLA~ 501 (564)
|.....++++..+ .++|++|-|+... .++.+|...+.+.+.+ ++. +..-+.- .+|+ +-..++.+
T Consensus 123 g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad-~lelN~scP~~~g~~~~~~~~~~~eiv~ 199 (344)
T PRK05286 123 GADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YAD-YFTVNISSPNTPGLRDLQYGEALDELLA 199 (344)
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCC-EEEEEccCCCCCCcccccCHHHHHHHHH
Confidence 4444455555555 7899999998774 3356676666555543 453 4332221 1121 12334555
Q ss_pred HHHHHhhc----CCCCCcccCCCCCCHHHHHHHHHh---HhCCCceeeCHHH
Q 008480 502 AVQRACEN----VTQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYSEEV 546 (564)
Q Consensus 502 ~Vvea~e~----~~~~fk~LYd~~~~I~eKIetIA~---IYGA~~V~~S~~A 546 (564)
+|.+++.. -+=-.|.- .+.+.++ +..+|+ -.|+|+|+.+...
T Consensus 200 aVr~~~~~~~~~~PV~vKls--p~~~~~~-~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 200 ALKEAQAELHGYVPLLVKIA--PDLSDEE-LDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHhccccCCceEEEeC--CCCCHHH-HHHHHHHHHHhCCcEEEEeCCc
Confidence 55555431 11112222 2344433 666776 4799999998754
No 401
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=42.40 E-value=19 Score=38.01 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.++|+|+| |.|.||||+++-|++.++
T Consensus 4 ~~~i~i~G----ptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 4 PKVIVIVG----PTASGKTALAIELAKRLN 29 (307)
T ss_pred ceEEEEEC----CCCcCHHHHHHHHHHhCC
Confidence 46888887 669999999999999884
No 402
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=42.22 E-value=73 Score=28.42 Aligned_cols=55 Identities=9% Similarity=-0.021 Sum_probs=35.9
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
-++|++|+.|+-.-.+..+ .+.+.++|++.+.. +. +.=++-|+|-.+|-+.+++.
T Consensus 107 ~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 107 SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FI--ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHHH
Confidence 4799999999977543322 23456677766664 33 34456788888877776643
No 403
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.19 E-value=1.3e+02 Score=30.97 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=73.5
Q ss_pred ehhHHHhc--CCCCCccCCCCCccc------cccccHHHHHHHHh--hHHHHHHHHh-h-cCCcEEEEe--cccCCCcHH
Q 008480 401 TIRALKMH--GGGPQVVAGKPLDHA------YLNENVALVEAGCV--NLARHIANTK-A-YGANVVVAV--NMFATDSKA 466 (564)
Q Consensus 401 TvRALK~H--GG~~~~~~g~PLp~~------l~~eNl~aLe~G~~--NL~kHIeNi~-~-fGvPvVVAI--N~F~tDT~a 466 (564)
|++.++.- +|+.-..+|-|..+- ..+-|..||+.|+. .+..-++.++ + +.+|+|+=. |-+-.=
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~--- 104 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY--- 104 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc---
Confidence 56656544 788888888776442 34568899999974 3455566666 3 588977544 653321
Q ss_pred HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh
Q 008480 467 ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 533 (564)
Q Consensus 467 Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~ 533 (564)
-++...+.|+++|+..+.+-+. -.|-++.+++.|.+..-.+=++...+.| .+.|+.|++
T Consensus 105 G~e~f~~~~~~aGvdGviipDL-------p~ee~~~~~~~~~~~gl~~I~lvap~t~-~eri~~i~~ 163 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDL-------PPEEAEELRAAAKKHGLDLIFLVAPTTT-DERLKKIAS 163 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCC-------CHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHH
Confidence 2334467788899986666543 2356777777776422223344555555 334444443
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=42.19 E-value=13 Score=33.46 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=18.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|+++| |.|.||||++--|.+.++
T Consensus 1 li~l~G----~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMG----VSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEc----CCCCCHHHHHHHHHhhcC
Confidence 356666 479999999998888763
No 405
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=42.19 E-value=18 Score=34.19 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=18.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
|++|+++| |-|.||||+.--|+.
T Consensus 2 g~~i~l~G----~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMG----PSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHhc
Confidence 56777777 789999998766643
No 406
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=42.10 E-value=1.6e+02 Score=32.70 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC--eEEEc-Cccc--cCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVC-SHHA--HGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~--~~~vs-~~wa--kGGeGa~eLA~~Vvea~ 507 (564)
|.++..+-+++||.|||| +..|...+..-+.+.+.++|++ +.++- ..++ .|=+-+.+--+++-.++
T Consensus 228 Ny~~ia~lAk~yg~~Vvv----~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraA 298 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLS----WTIMDINMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSG 298 (389)
T ss_pred hHHHHHHHHHHhCCeEEE----EcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHH
Confidence 888999999999999998 6667788888887778899998 76653 2332 66666666666665554
No 407
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=42.06 E-value=55 Score=33.59 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCcEEEEecccCCC
Q 008480 440 ARHIANTKAYGANVVVAVNMFATD 463 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tD 463 (564)
.++++.++++|+|++|+||+....
T Consensus 106 ~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 106 ETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 577888889999999999998753
No 408
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=41.94 E-value=40 Score=34.69 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHH-HHHHHHhhhcCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTV-GLCQALGAFLDK 103 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttI-GL~qaL~~~lgk 103 (564)
|.|.++.||+. .|+||||..- .|..++.++++.
T Consensus 19 p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 19 PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999996 7999999985 667777544443
No 409
>PRK13947 shikimate kinase; Provisional
Probab=41.88 E-value=15 Score=33.72 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.4
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++++ |.|.||||++.-|++.|+
T Consensus 4 I~l~G----~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 4 IVLIG----FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHhC
Confidence 55655 469999999999988874
No 410
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=41.59 E-value=28 Score=32.38 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.+++++| |.|.||||.+.-|+-++
T Consensus 30 ~~g~l~~i~g----~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAG----PPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEE----CSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 4588999998 78999999999998888
No 411
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=41.44 E-value=78 Score=28.53 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.8
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
.+.|+++++|+..--.+++++...+++++.|..
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ 73 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV 73 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe
Confidence 478999999998776677887777888888865
No 412
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=41.40 E-value=58 Score=29.99 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=36.3
Q ss_pred cCCcEEEEecccCCCcHHHH--HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi--~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+++++|+..-..+.+. +...++++..|...+. ..=++=|+|-.+|-+.+++.+
T Consensus 107 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 107 GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL--HFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE--EEEeccCccHHHHHHHHHHHh
Confidence 48999999999865322221 2345667777764222 223455678888888777765
No 413
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=41.03 E-value=39 Score=31.95 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
.++||| .+|.||||+-.-|.+ . ..-|.+..+..-|
T Consensus 2 v~ii~G----fLGsGKTTli~~ll~-~-~~~~~~~~vI~ne 36 (178)
T PF02492_consen 2 VIIITG----FLGSGKTTLINHLLK-R-NRQGERVAVIVNE 36 (178)
T ss_dssp EEEEEE----STTSSHHHHHHHHHH-H-HTTTS-EEEEECS
T ss_pred EEEEEc----CCCCCHHHHHHHHHH-H-hcCCceeEEEEcc
Confidence 456777 589999999888887 4 3567776666554
No 414
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=40.76 E-value=85 Score=27.64 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=29.6
Q ss_pred hcCCcEEEEecccCCCcHHHHHHHHHHHHHc--CCCeEEEcCccccCccchHHHHHHHH
Q 008480 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAA--GAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~--G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
..++|+++++|+..-..+.+.+.+.+..... .-..+-+.+.=++-|+|-.++-+.+.
T Consensus 102 ~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 102 HRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred cCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 4689999999997653222222222222111 11112122333677888877766543
No 415
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=40.71 E-value=22 Score=41.06 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=27.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+++|.| |.|.|||||.+.+...+ -..|++..+|
T Consensus 174 ~~~lI~G----pPGTGKT~t~~~ii~~~-~~~g~~VLv~ 207 (637)
T TIGR00376 174 DLFLIHG----PPGTGKTRTLVELIRQL-VKRGLRVLVT 207 (637)
T ss_pred CeEEEEc----CCCCCHHHHHHHHHHHH-HHcCCCEEEE
Confidence 4777877 78999999999998877 3668876554
No 416
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=40.66 E-value=24 Score=30.39 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=19.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+++.++|+| |.|.||||+.-=+.+.+.
T Consensus 3 ~~~~~~i~G----~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISG----PPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-----TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEc----CCCCCHHHHHHHHHHHhH
Confidence 466888888 689999999999988884
No 417
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=40.56 E-value=1.5e+02 Score=27.09 Aligned_cols=51 Identities=25% Similarity=0.228 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcH-----------HH-HHHHHHHHHHcCCC
Q 008480 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSK-----------AE-LNAVRNAAMAAGAF 481 (564)
Q Consensus 427 eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~-----------aE-i~~v~~~~~~~G~~ 481 (564)
.+.+.+++.+..+.+++. ..+.++|+ +.-++.+.. ++ -+.+++.|++.|+.
T Consensus 85 ~~~~~~~~~~~~~i~~i~---~~~~~vil-~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~ 147 (185)
T cd01832 85 TDPDTYRADLEEAVRRLR---AAGARVVV-FTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAV 147 (185)
T ss_pred CCHHHHHHHHHHHHHHHH---hCCCEEEE-ecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 456777877776666665 56776544 666554111 11 13456667777764
No 418
>PRK01060 endonuclease IV; Provisional
Probab=40.51 E-value=2e+02 Score=28.69 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=56.8
Q ss_pred ccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccC-CCcHH-HHH----HHHHHHH-HcCCCeEEEcCccccCcc
Q 008480 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKA-ELN----AVRNAAM-AAGAFDAVVCSHHAHGGK 494 (564)
Q Consensus 423 ~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~-tDT~a-Ei~----~v~~~~~-~~G~~~~~vs~~wakGGe 494 (564)
.+..+|-+-.++-...+.++|+..+++|.|.||.- -.+. ..+++ -.+ .+++.++ +.|+. .++-++|..+..
T Consensus 75 nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~-l~iEn~~~~~~~ 153 (281)
T PRK01060 75 NLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVT-IVLENTAGQGSE 153 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCc
Confidence 44567778888999999999999999999987752 1221 12222 333 3333332 35775 788888766532
Q ss_pred c--hHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 495 G--AVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 495 G--a~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
- ..+-...+++.++. ++.+.+.+|..
T Consensus 154 ~~~~~~~~~~l~~~v~~-~~~vg~~lD~g 181 (281)
T PRK01060 154 LGRRFEELARIIDGVED-KSRVGVCLDTC 181 (281)
T ss_pred ccCCHHHHHHHHHhcCC-cccEEEEEeHH
Confidence 1 12233455555542 22266666543
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=40.39 E-value=16 Score=34.63 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.0
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|+|.| |-|.||||.+.-|++-++
T Consensus 4 I~I~G----~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIG----SGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC
Confidence 66666 679999998888877763
No 420
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=40.10 E-value=1.4e+02 Score=30.96 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=33.6
Q ss_pred EecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHH
Q 008480 456 AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL 499 (564)
Q Consensus 456 AIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eL 499 (564)
+|=-+.-=|++|+....+.|.++|+..+=-|+.|+.||.--.+.
T Consensus 130 VIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv 173 (228)
T COG0274 130 VILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV 173 (228)
T ss_pred EEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH
Confidence 34445666788999999999999997444788999888776553
No 421
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=40.10 E-value=15 Score=37.06 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=18.5
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 80 TP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
-|+|.|||.|...|+.+| |+..++-
T Consensus 39 GpagtGKtetik~La~~l----G~~~~vf 63 (231)
T PF12774_consen 39 GPAGTGKTETIKDLARAL----GRFVVVF 63 (231)
T ss_dssp SSTTSSHHHHHHHHHHCT----T--EEEE
T ss_pred CCCCCCchhHHHHHHHHh----CCeEEEe
Confidence 499999999999998877 5555543
No 422
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=40.02 E-value=68 Score=32.18 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
.++++.++.+++|+++++|+.......--+.+.+..+..|.+
T Consensus 106 ~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 106 EKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 345556678999999999998754332112333333345654
No 423
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=39.95 E-value=1.7e+02 Score=33.64 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=53.7
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHH
Q 008480 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (564)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHI 443 (564)
||+|=|+|-|--+-+-.++ ..|+++||. +|. + +-++.|-..+....+|=
T Consensus 159 D~aVlEvGlgGr~DaTnvi--------~~p~v~vIT-nIg-~---------------------DH~~~LG~Tle~IA~~K 207 (530)
T PLN02881 159 DVAILEVGLGGRLDATNVV--------QKPVVCGIT-SLG-Y---------------------DHMEILGDTLGKIAGEK 207 (530)
T ss_pred CEEEEEecCCCCchhhhcc--------CCCCEEEEc-ccc-H---------------------HHHHhhcCCHHHHHHHH
Confidence 9999999987655443321 157766553 332 2 12233333455666777
Q ss_pred HHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEE
Q 008480 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~v 485 (564)
..|-+-|+|+|.+- .+ ++-.+.+++.|++.|++ ..+
T Consensus 208 agI~k~g~p~vt~~----q~-~ea~~vl~~~A~e~~a~-l~~ 243 (530)
T PLN02881 208 AGIFKPGVPAFTVP----QP-DEAMRVLEERASELGVP-LQV 243 (530)
T ss_pred HHHHhcCCCEEEeC----CC-hHHHHHHHHHHHHhCCc-EEE
Confidence 77778899998763 33 44457889999999997 443
No 424
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=39.91 E-value=20 Score=36.06 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
++|+++| |.|.||||.+--|++.+
T Consensus 3 ~liil~G----~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVG----VPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEc----CCCCCHHHHHHHHHHHC
Confidence 5788877 57999999998888776
No 425
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=39.90 E-value=33 Score=36.63 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=28.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
+.|-|++ +.|.||||+.--|...|. ..|.++ +++..
T Consensus 206 ~~~~~~g----~~~~GKtt~~~~l~~~l~-~~g~~v-~~iKh 241 (366)
T PRK14489 206 PLLGVVG----YSGTGKTTLLEKLIPELI-ARGYRI-GLIKH 241 (366)
T ss_pred cEEEEec----CCCCCHHHHHHHHHHHHH-HcCCEE-EEEEE
Confidence 5676766 689999999999999994 778875 56664
No 426
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=39.84 E-value=18 Score=37.18 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=22.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk 103 (564)
=||++| |.|.||||++..+++.+ ..+|.
T Consensus 60 ~vll~G----~pGTGKT~lA~~ia~~l-~~~g~ 87 (284)
T TIGR02880 60 HMSFTG----NPGTGKTTVALRMAQIL-HRLGY 87 (284)
T ss_pred eEEEEc----CCCCCHHHHHHHHHHHH-HHcCC
Confidence 356655 78999999999999999 46664
No 427
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=39.78 E-value=1.4e+02 Score=29.24 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=36.2
Q ss_pred cCCcEEEEecccCCCcHHHH--HHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAEL--NAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi--~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-++|+|++.|+-.-..+.|+ +...++|++. +.. +..+ =|+-|+|-.++=+.+++.+
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~et--SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEA--SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 47999999999765333433 3446677764 554 3333 3788888888766666544
No 428
>PRK12736 elongation factor Tu; Reviewed
Probab=39.76 E-value=1.4e+02 Score=32.26 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCc-EEEEecccCCCcHHH----HH-HHHHHHHHcCCC----eEEEcCcccc-Cc-----cchHHHHHH
Q 008480 439 LARHIANTKAYGAN-VVVAVNMFATDSKAE----LN-AVRNAAMAAGAF----DAVVCSHHAH-GG-----KGAVDLGIA 502 (564)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAIN~F~tDT~aE----i~-~v~~~~~~~G~~----~~~vs~~wak-GG-----eGa~eLA~~ 502 (564)
-..|+..++.+|+| .||++|+..--+++| ++ .++++++..+.. .++....+.. .| ++..+|-+.
T Consensus 116 t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~ 195 (394)
T PRK12736 116 TREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDA 195 (394)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHH
Confidence 45788889999999 579999987533333 22 455666666641 2444444431 12 234555555
Q ss_pred HHHHh
Q 008480 503 VQRAC 507 (564)
Q Consensus 503 Vvea~ 507 (564)
+.+.+
T Consensus 196 l~~~l 200 (394)
T PRK12736 196 VDEYI 200 (394)
T ss_pred HHHhC
Confidence 55443
No 429
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=39.68 E-value=30 Score=32.82 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=32.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
+|++|+++| |.|.||+|..-=|.+-....++.-...+-|.|--|=+.|
T Consensus 1 ~~r~ivl~G----psg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g 48 (184)
T smart00072 1 DRRPIVLSG----PSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNG 48 (184)
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCC
Confidence 367888887 889999997777766652235555556667776664443
No 430
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=39.47 E-value=1.2e+02 Score=27.25 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
+...++......++|++|++|+-.-.... ..+..++++++.+...++.+. ++=|+|-.++-+.+.+
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~~~~l~~ 163 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS--AKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE--CCCCCCHHHHHHHHHH
Confidence 44445554455789999999986543222 234567778877764333322 3446777766665543
No 431
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.46 E-value=42 Score=35.67 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~ 146 (564)
.+=.+|-|-.| |==|.|||-+++-|++.| ...|++..+.-| |-+|-..| -.-+|-|-. +-+-+||=
T Consensus 33 ~~vpVIsVGNl--tvGGTGKTP~v~~L~~~L-~~~G~~~~IlSR--------GYg~~~~~-~~~~v~~~~--~~~~~GDE 98 (326)
T PF02606_consen 33 LPVPVISVGNL--TVGGTGKTPLVIWLARLL-QARGYRPAILSR--------GYGRKSKG-EPILVSDGS--DAEEVGDE 98 (326)
T ss_pred CCCcEEEEccc--ccCCCCchHHHHHHHHHH-HhcCCceEEEcC--------CCCCCCCC-CeEEEeCCC--ChhhhcCH
Confidence 33446666655 567999999999999999 588999998888 34333332 233444444 77777874
Q ss_pred h
Q 008480 147 H 147 (564)
Q Consensus 147 h 147 (564)
-
T Consensus 99 p 99 (326)
T PF02606_consen 99 P 99 (326)
T ss_pred H
Confidence 3
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=39.35 E-value=28 Score=32.04 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++|+|.|. -|.||||++--|++.+
T Consensus 3 ~~ii~i~G~----~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG----PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 457888774 6999999988887766
No 433
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=39.33 E-value=67 Score=34.84 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=51.5
Q ss_pred ehhHHHhcC-CCCCccCCCCCccccccccHHHHHHHHh--hHHHHHHHHhhcCCcEE---EEecccCCCcHHHHHHHHHH
Q 008480 401 TIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVV---VAVNMFATDSKAELNAVRNA 474 (564)
Q Consensus 401 TvRALK~HG-G~~~~~~g~PLp~~l~~eNl~aLe~G~~--NL~kHIeNi~~fGvPvV---VAIN~F~tDT~aEi~~v~~~ 474 (564)
.+.++|-+| ++.....| .+...++.++.+.++.. ...+=|+.+++.+..+. -.|-=||.+|+++++...++
T Consensus 234 ll~~~~~~~~~~~~l~ig---lES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~f 310 (430)
T TIGR01125 234 VIDLMAEGPKVLPYLDIP---LQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDF 310 (430)
T ss_pred HHHHHhhCCcccCceEeC---CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHH
Confidence 356666664 34444444 24455677777777643 34456677777643332 23556899999999999999
Q ss_pred HHHcCCC
Q 008480 475 AMAAGAF 481 (564)
Q Consensus 475 ~~~~G~~ 481 (564)
+++.++.
T Consensus 311 l~~~~~~ 317 (430)
T TIGR01125 311 VEEGQFD 317 (430)
T ss_pred HHhcCCC
Confidence 9999886
No 434
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.20 E-value=45 Score=36.31 Aligned_cols=31 Identities=29% Similarity=0.149 Sum_probs=26.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.|+|-|||.+ |||||+-=|.+.|. ..|+++.
T Consensus 117 ~~vIaITGTn------GKTTT~~ll~~iL~-~~g~~~~ 147 (458)
T PRK01710 117 AKVFGVTGSD------GKTTTTTLIYEMLK-EEGYKTW 147 (458)
T ss_pred CCEEEEECCC------CHHHHHHHHHHHHH-hCCCCEE
Confidence 5789999886 99999999999994 7787753
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.19 E-value=44 Score=36.27 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
--+||+.++| |.|||||--=|+.-| ..-|++++++
T Consensus 139 p~Vil~vGVN----G~GKTTTIaKLA~~l-~~~g~~Vlla 173 (340)
T COG0552 139 PFVILFVGVN----GVGKTTTIAKLAKYL-KQQGKSVLLA 173 (340)
T ss_pred cEEEEEEecC----CCchHhHHHHHHHHH-HHCCCeEEEE
Confidence 5589999998 889999998899999 5889998875
No 436
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=39.05 E-value=1.3e+02 Score=34.20 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=87.6
Q ss_pred CCceeecccc---chhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEE---ee--
Q 008480 298 GDPITADDLG---VGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVV---TE-- 369 (564)
Q Consensus 298 g~pVta~DL~---~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvV---TE-- 369 (564)
.+++|..=++ .-|||.+.+ -++|+=.+||| ++||.+-.-.-+.-..-.+-..+- ||
T Consensus 58 ~~~~~inP~k~CqplGA~~a~~----------Gi~~~~plvHG------sqGC~~y~r~~~~rhf~ep~~~~sT~m~E~~ 121 (515)
T TIGR01286 58 REALTVNPAKACQPLGAVLAAL----------GFEGTMPFVHG------SQGCVAYFRSHFNRHFKEPVSAVSSSMTEDA 121 (515)
T ss_pred ccceecCCcccchHHHHHHHHH----------hhcCCeeeccC------chhHHHHHHHHHhccCCCCcccccccCCCCc
Confidence 4555555554 247777765 47899999999 689997543322211111112211 12
Q ss_pred ccccccccccccccc-ccccCCCCcceEEEEeehhH-------------HHhcCCCCCccCCCCCccccccccHHHHHHH
Q 008480 370 AGFGADIGAEKFMNI-KCRYSGLTPQCAVIVATIRA-------------LKMHGGGPQVVAGKPLDHAYLNENVALVEAG 435 (564)
Q Consensus 370 AGFGaDlGaEKF~dI-kcr~~gl~P~avVlVaTvRA-------------LK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G 435 (564)
+=||.+ +|..+- +-=..-.+|++++|++|+-+ .+-.+++|. +.|++..-+.-=......|
T Consensus 122 aVfGG~---~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~---~~pVi~v~TpgF~Gs~~~G 195 (515)
T TIGR01286 122 AVFGGL---KNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPD---DFPVPFAHTPSFVGSHITG 195 (515)
T ss_pred eeeCcH---HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCC---CCceEEeeCCCCcccHHHH
Confidence 335532 443321 11123357999999998753 333333332 1233321110001233455
Q ss_pred HhhHHHHHH-HHhhcC--------CcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcC--------------ccccC
Q 008480 436 CVNLARHIA-NTKAYG--------ANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS--------------HHAHG 492 (564)
Q Consensus 436 ~~NL~kHIe-Ni~~fG--------vPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~--------------~wakG 492 (564)
+.|..+-|= .+..-. -+-|-.|.-| ..+.+.+..|++..++.|++-.++.+ .| .|
T Consensus 196 yd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~-~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~-~g 273 (515)
T TIGR01286 196 YDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGF-ETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMY-AG 273 (515)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCeEEEECCC-CCCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCcccc-CC
Confidence 554433221 221100 0112222223 22367788889999999997333342 33 46
Q ss_pred ccchHHHHH
Q 008480 493 GKGAVDLGI 501 (564)
Q Consensus 493 GeGa~eLA~ 501 (564)
|..-.++++
T Consensus 274 gttleei~~ 282 (515)
T TIGR01286 274 GTTLEEMKD 282 (515)
T ss_pred CCCHHHHHH
Confidence 777666553
No 437
>PRK04841 transcriptional regulator MalT; Provisional
Probab=38.91 E-value=34 Score=39.52 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=34.5
Q ss_pred hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 58 ~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
.+++++..-...++++|+| |+|-||||.. .|-+ ...+.-+-..|++.+-.|
T Consensus 21 rl~~~l~~~~~~~~~~v~a----paG~GKTtl~---~~~~-~~~~~~~w~~l~~~d~~~ 71 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTS----PAGYGKTTLI---SQWA-AGKNNLGWYSLDESDNQP 71 (903)
T ss_pred HHHHHHhcccCCCeEEEEC----CCCCCHHHHH---HHHH-HhCCCeEEEecCcccCCH
Confidence 3444554445678999998 8999999995 4555 345544456677766665
No 438
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=38.87 E-value=1.3e+02 Score=26.32 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=33.7
Q ss_pred hcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
..++|+++++|+..-..+. ..+.+.+++++.+..-+.+| ++=|+|-.++-+.+.+
T Consensus 103 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 103 GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS---AKTGKGIEELFLSLAK 159 (162)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe---CCCCCCHHHHHHHHHH
Confidence 3479999999987654222 12345556677777523233 5556777776666544
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=38.69 E-value=43 Score=34.97 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCceEEEecCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQP 112 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l-gk~~~~~lReP 112 (564)
.++-|+|+| |-|.||||+.-.|.+.+. .. ...-++++=+|
T Consensus 131 ~~~~ilI~G----~tGSGKTTll~al~~~i~-~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 131 ARKNILVVG----GTGSGKTTLANALLAEIA-KNDPTDRVVIIEDT 171 (299)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHHhh-ccCCCceEEEECCc
Confidence 356788998 569999999999988873 32 12346666554
No 440
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=38.62 E-value=25 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
...++|+| |.|.||||+..-+...+
T Consensus 43 ~~~~~l~G----~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITG----EVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEc----CCCCCHHHHHHHHHHhc
Confidence 44777877 78999999998887666
No 441
>PLN03110 Rab GTPase; Provisional
Probab=38.43 E-value=97 Score=30.04 Aligned_cols=56 Identities=9% Similarity=-0.104 Sum_probs=35.9
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+|++.|+-.-+... +.+..+.++...+.. +..+ =++=|+|-.++-+.+++.+
T Consensus 116 ~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~--SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLET--SALEATNVEKAFQTILLEI 173 (216)
T ss_pred CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 589999999986532221 123445666667775 4333 3677788877777776655
No 442
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=38.29 E-value=31 Score=36.67 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
.++-|+|+| |-|.||||+.-.|.+.+. . .. -++++-+
T Consensus 159 ~~~nili~G----~tgSGKTTll~aL~~~ip-~-~~-ri~tiEd 195 (332)
T PRK13900 159 SKKNIIISG----GTSTGKTTFTNAALREIP-A-IE-RLITVED 195 (332)
T ss_pred cCCcEEEEC----CCCCCHHHHHHHHHhhCC-C-CC-eEEEecC
Confidence 467899998 459999999999988884 2 33 3555543
No 443
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=38.13 E-value=81 Score=32.01 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCCCeEEeeccccccccccccccc-ccccCCC---CcceEEEEeeh--hHHHhcCCCCCccCCCCCcccc
Q 008480 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNI-KCRYSGL---TPQCAVIVATI--RALKMHGGGPQVVAGKPLDHAY 424 (564)
Q Consensus 351 iAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dI-kcr~~gl---~P~avVlVaTv--RALK~HGG~~~~~~g~PLp~~l 424 (564)
|+-++-.||+|.+ |.+-+.-...++..+=|+=| .|+.... .|+++-+|+++ ...+|.+..... .-
T Consensus 50 i~lkinaKlGG~n-~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~--------~~ 120 (302)
T PF02171_consen 50 IALKINAKLGGIN-PWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQ--------DS 120 (302)
T ss_dssp HHHHHHHHTTTBS-EEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEE--------CT
T ss_pred HHHHHHHhCCCee-eeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEe--------cc
Confidence 5677778888665 56666655433311112111 2444444 59999999999 778888776442 23
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecc-------cCCCcHHHHHHHHHHHHHcC
Q 008480 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-------FATDSKAELNAVRNAAMAAG 479 (564)
Q Consensus 425 ~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~-------F~tDT~aEi~~v~~~~~~~G 479 (564)
.+|.++.|+.=+.+..+..++..+-..|-=|.|=| |..=-++|++.+++.|++.+
T Consensus 121 ~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~ 182 (302)
T PF02171_consen 121 GQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELG 182 (302)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcc
Confidence 46777778887777666665555533565555533 32333679999999999876
No 444
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=38.12 E-value=20 Score=29.00 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCCcchhHHHHHHHH
Q 008480 81 PLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL 97 (564)
|.|.||||++--|.+.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999999998887
No 445
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=38.10 E-value=25 Score=34.56 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+++|+|+|+ -|.||||.+--|++-+
T Consensus 2 ~~~~i~i~G~----~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGI----PGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3678999986 5999999887776654
No 446
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=38.09 E-value=33 Score=33.80 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
++.++|.++|+ .|-||||++.-+++-
T Consensus 17 ~~~~~v~I~G~----~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGM----GGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEES----TTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcC----CcCCcceeeeecccc
Confidence 56889999997 799999999888776
No 447
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=37.94 E-value=18 Score=35.66 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|||- +.|.||||..--|+|+|+
T Consensus 5 IvLiG-----~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 5 IVLIG-----FMGAGKSTIGRALAKALN 27 (172)
T ss_pred EEEEc-----CCCCCHhHHHHHHHHHcC
Confidence 55553 569999999999999996
No 448
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=37.94 E-value=29 Score=36.90 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=25.9
Q ss_pred chhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 57 ~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
...+.+....+.--.|+++|. .|.||||++.-|+..|
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~----sgsGKStlA~~La~~l 116 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGA----SGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECC----CCCCHHHHHHHHHHHh
Confidence 445555554344567888874 6999999888888666
No 449
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=37.83 E-value=29 Score=38.53 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=24.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
--||-||+.+ |-|.|||..++|++|-|+
T Consensus 63 ~aGrgiLi~G----ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVG----PPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEEC----CCCCcHHHHHHHHHHHhC
Confidence 4599999987 889999999999998885
No 450
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.65 E-value=37 Score=36.69 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.+.|-||+.+ |||||+-=|++.| ...|+++.
T Consensus 113 ~~~vI~VTGT~------GKTTTt~ll~~iL-~~~g~~~~ 144 (460)
T PRK01390 113 DAPFIAITGTN------GKSTTTALIAHIL-REAGRDVQ 144 (460)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HhcCCCeE
Confidence 46789888876 9999999999999 58888764
No 451
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=37.56 E-value=28 Score=33.23 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=19.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|++|.++| |.|.||||+.--|+.-+
T Consensus 3 ge~i~l~G----~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMG----VSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 77888887 57999999877666544
No 452
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=37.49 E-value=1.3e+02 Score=28.19 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
+.++.+..+++|+|+++|+.....+.++. +++...+.. +..+ =++-|.|-.++-+.+.+
T Consensus 144 ~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 144 KVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPD-AVFI--SAKTGEGLDELLEAIEE 202 (204)
T ss_pred HHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCc-eEEE--EcCCCCCHHHHHHHHHh
Confidence 33444455689999999998876666654 344434443 3322 24566777777665544
No 453
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=37.45 E-value=17 Score=32.91 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=17.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|.||+ +.|+||||++--|++.|
T Consensus 2 iI~i~G----~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISG----PPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHc
Confidence 355555 57999999998887766
No 454
>PLN02591 tryptophan synthase
Probab=37.44 E-value=2.3e+02 Score=29.33 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=69.2
Q ss_pred ehhHHHh--cCCCCCccCCCCCccc------cccccHHHHHHHHh--hHHHHHHHHhh-cCCcEEE--EecccCCCcHHH
Q 008480 401 TIRALKM--HGGGPQVVAGKPLDHA------YLNENVALVEAGCV--NLARHIANTKA-YGANVVV--AVNMFATDSKAE 467 (564)
Q Consensus 401 TvRALK~--HGG~~~~~~g~PLp~~------l~~eNl~aLe~G~~--NL~kHIeNi~~-fGvPvVV--AIN~F~tDT~aE 467 (564)
|++.++. -+|+.-..+|-|-.+- ..+-+..||+.|+. ....-++.+++ +.+|+|+ -.|-+-. -=
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~---~G 94 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK---RG 94 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH---hH
Confidence 4454443 3677777777665542 33457889998862 33344445544 6788653 2343211 12
Q ss_pred HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh
Q 008480 468 LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 533 (564)
Q Consensus 468 i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~ 533 (564)
++...+.|+++|+..+++-+. -.|-++.+.+.|.+..=.+=++...+.+ ++.|+.||+
T Consensus 95 ~~~F~~~~~~aGv~GviipDL-------P~ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~ 152 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL-------PLEETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAE 152 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC-------CHHHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHH
Confidence 344567788999986666653 1355667777776422234456655555 445555554
No 455
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=37.40 E-value=1.6e+02 Score=31.17 Aligned_cols=56 Identities=21% Similarity=0.136 Sum_probs=37.5
Q ss_pred cCCcEEEEecccCCCcHHHHHHHH-HHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAELNAVR-NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~-~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.+.|+||++|+..-..+++++.+. +++++.+.. ++.+. ++-|+|-.+|-+.+.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iS--Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPIS--ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEE--ccCCcCHHHHHHHHHHHh
Confidence 478999999998865555555444 445556765 44333 455688888888776653
No 456
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=37.13 E-value=1.8e+02 Score=27.18 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=36.2
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+|++.|+..--.+.+ .+...++++..++. +..+. |+=|+|-.++-+.+++.+.
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S--Ak~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEAS--AKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEec--CCCCCCHHHHHHHHHHHHH
Confidence 5799999999965422222 12245667777875 44333 3447888888877777654
No 457
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.88 E-value=47 Score=36.71 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCce-EEEecCC
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKV-VTCLRQP 112 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~q-aL~~~lgk~~-~~~lReP 112 (564)
-|.|.++||+| |.|.||||.+.=++. ++ .+-|.++ ++.+-||
T Consensus 28 ~p~Gs~~li~G----~pGsGKT~l~~qf~~~~~-~~~ge~~lyis~ee~ 71 (509)
T PRK09302 28 LPKGRPTLVSG----TAGTGKTLFALQFLVNGI-KRFDEPGVFVTFEES 71 (509)
T ss_pred CCCCcEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCEEEEEccCC
Confidence 37799999999 789999999987654 45 2337664 5555554
No 458
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.83 E-value=35 Score=37.44 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=25.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.++|-|||.+ ||||||-=|.+-| ...|+++.
T Consensus 115 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~~~~ 145 (468)
T PRK04690 115 PGTVCVTGTK------GKSTTTALLAHLL-RAAGHRTA 145 (468)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HhcCCcEE
Confidence 4789888876 9999999999999 47787653
No 459
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.82 E-value=26 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=23.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
++=++++| |.|.|||.++++++..+. .-|+++.
T Consensus 47 ~~~l~l~G----~~G~GKThLa~ai~~~~~-~~g~~v~ 79 (178)
T PF01695_consen 47 GENLILYG----PPGTGKTHLAVAIANEAI-RKGYSVL 79 (178)
T ss_dssp --EEEEEE----STTSSHHHHHHHHHHHHH-HTT--EE
T ss_pred CeEEEEEh----hHhHHHHHHHHHHHHHhc-cCCccee
Confidence 44477777 469999999999999885 5677653
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.82 E-value=30 Score=39.01 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk 103 (564)
.|++|++.| |-|.|||||..-|+-.+-.+.|.
T Consensus 255 ~g~Vi~LvG----pnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 255 RGGVFALMG----PTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred CCcEEEEEC----CCCccHHHHHHHHHHHHHHhcCC
Confidence 477887777 56999999999999777323343
No 461
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=36.72 E-value=1.4e+02 Score=27.63 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhc--CCcEEEEecccCCCcHH----H--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAY--GANVVVAVNMFATDSKA----E--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~f--GvPvVVAIN~F~tDT~a----E--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++..-++.++++ ++|+++++|+..-.... + .+.+.+++.+.++. +. ++=++=|+|-.+|-+.+.+.+
T Consensus 91 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~--~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 91 RAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HF--ETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EE--EEeCCCCCCHHHHHHHHHHHH
Confidence 333334444443 79999999998642211 1 13456677777775 33 233455678777777777655
No 462
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=36.68 E-value=1.6e+02 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.7
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEE
Q 008480 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV 397 (564)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avV 397 (564)
+|+| ++|=||.... ..|+.||.+|
T Consensus 23 ~~~i-----~aDgGa~~l~-----~~gi~Pd~ii 46 (208)
T cd07995 23 DLII-----AADGGANHLL-----DLGIVPDLII 46 (208)
T ss_pred CEEE-----EEChHHHHHH-----HcCCCCCEEE
Confidence 7774 9999999755 5699999987
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.66 E-value=40 Score=36.02 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+.|-||+.+ |||||+-=|.+.| ...|+.+.
T Consensus 108 ~~~I~VTGT~------GKTTTt~ll~~iL-~~~g~~~~ 138 (447)
T PRK02472 108 APIIGITGSN------GKTTTTTLIGEML-KAGGQHAL 138 (447)
T ss_pred CCEEEEeCCC------chHHHHHHHHHHH-HHCCCCeE
Confidence 5688888876 9999999999999 57787763
No 464
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=36.57 E-value=2.4e+02 Score=27.61 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=42.2
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEeccc--CCCc--------HHHH---HHHHHHHHHcCCCeEEEcC--ccc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF--ATDS--------KAEL---NAVRNAAMAAGAFDAVVCS--HHA 490 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F--~tDT--------~aEi---~~v~~~~~~~G~~~~~vs~--~wa 490 (564)
.++-...+.++..++++|+..+++|.++||..-.+ ..+. +... +.+.++|++.|+. +.+-. ||.
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~~~~~~ 151 (274)
T COG1082 73 SPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALENHHHPG 151 (274)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEeecCCcc
Confidence 44444558888899999999999999988855432 1111 2233 3445556677876 55554 444
Q ss_pred cCccc
Q 008480 491 HGGKG 495 (564)
Q Consensus 491 kGGeG 495 (564)
.--..
T Consensus 152 ~~~~~ 156 (274)
T COG1082 152 NVVET 156 (274)
T ss_pred ceeec
Confidence 43333
No 465
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.50 E-value=97 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeEEEc
Q 008480 461 ATDSKAELNAVRNAAMAAGAFDAVVC 486 (564)
Q Consensus 461 ~tDT~aEi~~v~~~~~~~G~~~~~vs 486 (564)
.+|+.+...++-++|.+.+++ ++.+
T Consensus 232 ~~d~~~~r~~ln~~~~~~~ip-~i~~ 256 (376)
T PRK08762 232 GADNFPTRYLLNDACVKLGKP-LVYG 256 (376)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 567777777888999999997 5544
No 466
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.45 E-value=41 Score=36.14 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.+.|-||+.+ ||||||-=|++.| ...|+++..
T Consensus 108 ~~~~I~VTGT~------GKTTTt~ml~~iL-~~~g~~~~~ 140 (459)
T PRK02705 108 HIPWVGITGTN------GKTTVTALLAHIL-QAAGLNAPA 140 (459)
T ss_pred CCCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeEE
Confidence 46788888875 9999999999999 478876543
No 467
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.40 E-value=89 Score=34.76 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=58.9
Q ss_pred hhHHHhcCCCCCccCCCCCccccccccHHHHHHHHh--hHHHHHHHHhhcCCcEEEE-ecccCCCcHHHHHHHHHHHHHc
Q 008480 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMAA 478 (564)
Q Consensus 402 vRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~--NL~kHIeNi~~fGvPvVVA-IN~F~tDT~aEi~~v~~~~~~~ 478 (564)
++.++-. |+.....|. +...++.++.+.||.. ...+-|+.+++.|+.+.+- |=-||.+|.++++...+++.+.
T Consensus 290 l~~l~~a-G~~~v~iGi---ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l 365 (497)
T TIGR02026 290 LHLYRRA-GLVHISLGT---EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDW 365 (497)
T ss_pred HHHHHHh-CCcEEEEcc---ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 4666655 555666663 6667788999988874 4557788899999987654 3358999999999999999999
Q ss_pred CCCeE
Q 008480 479 GAFDA 483 (564)
Q Consensus 479 G~~~~ 483 (564)
+...+
T Consensus 366 ~~~~~ 370 (497)
T TIGR02026 366 DPDQA 370 (497)
T ss_pred CCCce
Confidence 88533
No 468
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=36.28 E-value=29 Score=33.22 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=19.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
|+=||+++ |.|.||||++.-|.+.
T Consensus 14 g~gvLi~G----~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITG----PSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEc----CCCCCHHHHHHHHHHc
Confidence 66677777 8899999999877654
No 469
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=36.26 E-value=51 Score=35.68 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=32.3
Q ss_pred hhhhhcc--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 58 SVLDELE--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 58 ~~l~~~~--~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.-||++= .-+.|.+++|++ |-|.||||+..-++..+. .-|.+++-
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G----~pG~GKStLllq~a~~~a-~~g~~VlY 115 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGG----DPGIGKSTLLLQVAARLA-KRGGKVLY 115 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 4455532 125689999999 679999999999988884 55555543
No 470
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=36.25 E-value=1.2e+02 Score=30.68 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
...|+....+.|+|+|+.-- .=+++|++.+.+ |. .++. +.++-.|+-|-.-...|++......
T Consensus 73 ~~~~~~~al~~G~~vvigtt---G~s~~~~~~l~~-aa-~~~~-v~~s~n~s~g~~~~~~l~~~aa~~l 135 (257)
T PRK00048 73 TLENLEFALEHGKPLVIGTT---GFTEEQLAELEE-AA-KKIP-VVIAPNFSIGVNLLMKLAEKAAKYL 135 (257)
T ss_pred HHHHHHHHHHcCCCEEEECC---CCCHHHHHHHHH-Hh-cCCC-EEEECcchHHHHHHHHHHHHHHHhc
Confidence 35677888889999998832 334778888888 44 6776 7899999999888888887777655
No 471
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=36.20 E-value=24 Score=38.03 Aligned_cols=21 Identities=52% Similarity=0.691 Sum_probs=16.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttI 91 (564)
.+|.++..-+ |.|+||||+-.
T Consensus 27 ~~Gef~vllG----PSGcGKSTlLr 47 (338)
T COG3839 27 EDGEFVVLLG----PSGCGKSTLLR 47 (338)
T ss_pred cCCCEEEEEC----CCCCCHHHHHH
Confidence 4677776665 89999999843
No 472
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=36.20 E-value=20 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
|.|.||||++-.|+.-|+
T Consensus 3 ~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 679999999888877763
No 473
>PRK12377 putative replication protein; Provisional
Probab=36.13 E-value=30 Score=35.35 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
+-++++| |.|.|||+++.+++..|. .-|+++
T Consensus 102 ~~l~l~G----~~GtGKThLa~AIa~~l~-~~g~~v 132 (248)
T PRK12377 102 TNFVFSG----KPGTGKNHLAAAIGNRLL-AKGRSV 132 (248)
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCCe
Confidence 4577777 559999999999999995 667765
No 474
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=36.09 E-value=1.7e+02 Score=27.13 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHH----HHHHHHHH
Q 008480 437 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD----LGIAVQRA 506 (564)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~e----LA~~Vvea 506 (564)
.++.+.++.+++ ..+|+||+.|+..-..+. +.+..+++++..|+. +..+. ++=|.|-.+ |++.+++-
T Consensus 89 ~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evS--a~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 89 ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETS--AKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHHH
Confidence 344444444443 468999999997543222 223445677777875 43332 344566644 45554443
No 475
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=35.72 E-value=1.1e+02 Score=25.81 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHhhcCCcEEEEecccCCCcHHHHHHHH-----HHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 442 HIANTKAYGANVVVAVNMFATDSKAELNAVR-----NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~-----~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
.+......+.|+||++|+...-++.+++... ......+.+ +.... ++-|+|-.+|-+.+.+
T Consensus 96 ~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s--a~~~~~v~~l~~~l~~ 161 (163)
T cd00880 96 LLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLP-VIAVS--ALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCc-eEEEe--eeccCCHHHHHHHHHh
Confidence 5666777999999999998766666665442 122223333 22222 3345677766666554
No 476
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.71 E-value=1.1e+02 Score=31.96 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhcCC-cEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 008480 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (564)
Q Consensus 438 NL~kHIeNi~~fGv-PvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakG 492 (564)
...+.|+.+++.|+ |+.+-.=-.+..+++|+..+.+++++.|+. +.+.+...-|
T Consensus 141 ~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g 195 (329)
T PRK13361 141 RVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLG 195 (329)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe-EEEEecccCC
Confidence 44455666677888 554321124556789999999999999995 6555544444
No 477
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.70 E-value=1.3e+02 Score=29.51 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCc-cchHHHHHHHHHHhhcC
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG-KGAVDLGIAVQRACENV 510 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGG-eGa~eLA~~Vvea~e~~ 510 (564)
.+..+.++.++++-+++.|..|.+..-...-=+++++..+.+.+.+.|+..+.+++...-.- +...+|-+.+.+...
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~-- 180 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP-- 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc--
Confidence 45667789999999999999997777665555688888888888899998777887653221 122233333333321
Q ss_pred CCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeC
Q 008480 511 TQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 543 (564)
Q Consensus 511 ~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S 543 (564)
+-++.+....+.-+-- -+.++- -+|++-|+-|
T Consensus 181 ~~~l~~H~Hnd~Gla~-An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 181 DIPLGFHAHNDLGLAV-ANALAALEAGADRIDGT 213 (237)
T ss_dssp TSEEEEEEBBTTS-HH-HHHHHHHHTT-SEEEEB
T ss_pred CCeEEEEecCCccchh-HHHHHHHHcCCCEEEcc
Confidence 1345555555544442 356666 8888887644
No 478
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=35.68 E-value=1.5e+02 Score=25.87 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHhhcCCcEEEEecccCCCcH--HHHHHHHHHHHH-cC----CCeEEEcCccccCccchHHHHHHHHH
Q 008480 444 ANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMA-AG----AFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~-~G----~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
+.+...+.|+++++|+..-..+ .+++.+.+..++ .+ .+ +.. .=++-|+|-.++-+.+.+
T Consensus 107 ~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 107 GLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP-IVF--ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred HHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc-eEE--EeccCCCCHHHHHHHHHH
Confidence 3445678999999999754333 556655555543 22 22 222 235567777766665543
No 479
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=35.68 E-value=29 Score=35.02 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.|+=||++| |.|.||||++.-|++.+
T Consensus 20 ~g~~vLL~G----~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 20 SGYPVHLRG----PAGTGKTTLAMHVARKR 45 (262)
T ss_pred cCCeEEEEc----CCCCCHHHHHHHHHHHh
Confidence 356677877 89999999998887755
No 480
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.49 E-value=92 Score=34.09 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=58.1
Q ss_pred ehhHHHhcC-CCCCccCCCCCccccccccHHHHHHHHh--hHHHHHHHHhhcCCcEEEEe---cccCCCcHHHHHHHHHH
Q 008480 401 TIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVAV---NMFATDSKAELNAVRNA 474 (564)
Q Consensus 401 TvRALK~HG-G~~~~~~g~PLp~~l~~eNl~aLe~G~~--NL~kHIeNi~~fGvPvVVAI---N~F~tDT~aEi~~v~~~ 474 (564)
.+++|+-+| |+....+|- +...++-+..+.++.. ...+=|+.+++.|..+.+.. --||.+|+++++...++
T Consensus 236 ll~~l~~~~~g~~~l~igv---QSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 236 VIAAMAETPAVCEYIHLPV---QSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HHHHHHhcCcCCCeEEecc---ccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 567887665 566655552 4455566777777765 36777888888876654433 36999999999999999
Q ss_pred HHHcCCCeE
Q 008480 475 AMAAGAFDA 483 (564)
Q Consensus 475 ~~~~G~~~~ 483 (564)
+++.+...+
T Consensus 313 i~~l~~~~i 321 (440)
T PRK14334 313 YDEVGYDSA 321 (440)
T ss_pred HHhcCCCEe
Confidence 999998644
No 481
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=35.48 E-value=1.2e+02 Score=32.00 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=37.0
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 008480 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs 486 (564)
+....+.|++++++|+++.|..- ...++..|++.+.+++.++|+..+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~v-v~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAV-IHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE-eecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 44555667778889998766442 455788999999999999999755443
No 482
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=35.35 E-value=29 Score=39.15 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=22.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.-.+|+|.|. -|.||||++-.|++.|+
T Consensus 254 ~p~vil~~G~----~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGV----SGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 4678999885 49999999999998884
No 483
>PLN02199 shikimate kinase
Probab=35.12 E-value=30 Score=36.89 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..|+-|+++|+. |.||||+..=|++.|+
T Consensus 100 l~~~~I~LIG~~----GSGKSTVgr~LA~~Lg 127 (303)
T PLN02199 100 LNGRSMYLVGMM----GSGKTTVGKLMSKVLG 127 (303)
T ss_pred cCCCEEEEECCC----CCCHHHHHHHHHHHhC
Confidence 358889999986 9999999988888774
No 484
>PRK05973 replicative DNA helicase; Provisional
Probab=34.98 E-value=47 Score=33.93 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce-EEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~-~~~lReP 112 (564)
++|.++||+| +-|.||||.+.=++.... +-|+++ +..+=|+
T Consensus 62 ~~Gsl~LIaG----~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGA----RPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC
Confidence 6799999999 569999999988776553 448765 4455444
No 485
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=34.96 E-value=47 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|+++.++| |.|.||||++.-++...
T Consensus 17 ~~g~v~~I~G----~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 17 PTGRITEIFG----EFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cCCcEEEEeC----CCCCChhHHHHHHHHHh
Confidence 6799999999 78999999988776554
No 486
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=34.85 E-value=92 Score=29.81 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=44.2
Q ss_pred hhcCCcEEEEecccCCC-cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHH
Q 008480 447 KAYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tD-T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~V 503 (564)
+-|.-|||=.|++-.-+ +++.++..+++.+.+|+... -.+=+.=|+|-.+|.+.+
T Consensus 86 ~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i--f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI--FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe--EEEECCCCcCHHHHHHHH
Confidence 35889999999998777 78999999999999999743 455566788888887543
No 487
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=34.70 E-value=39 Score=38.56 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..|..|++||. .|.||||++-.|++.|+
T Consensus 390 ~~g~~Ivl~Gl----~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 390 KQGFTVFFTGL----SGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCCeEEEEECC----CCChHHHHHHHHHHHhh
Confidence 45889999985 69999999999999995
No 488
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.67 E-value=45 Score=35.73 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=25.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+.|-|||.+ ||||||-=|.+-| ...|+++.
T Consensus 105 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 135 (438)
T PRK03806 105 APIVAITGSN------GKSTVTTLVGEMA-KAAGWKVG 135 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHcCCCEE
Confidence 4588888875 9999999999999 47888754
No 489
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=34.64 E-value=23 Score=36.13 Aligned_cols=31 Identities=45% Similarity=0.599 Sum_probs=22.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
..+|.|.| |=|.|||| |+|+|++|+|-+++.
T Consensus 4 ~~~IvI~G----~IG~GKST----La~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEG----MIGAGKST----LAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEec----ccccCHHH----HHHHHHHHhCCceee
Confidence 34788877 47999999 556666777766553
No 490
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=34.49 E-value=1.3e+02 Score=30.85 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=41.9
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCcc
Q 008480 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~w 489 (564)
+.++.++|+.+|+.|+.|.+.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 568889999999999988777655333457777777777788999877788764
No 491
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=34.46 E-value=1.6e+02 Score=26.12 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=36.8
Q ss_pred hHHHHHHHHhh-cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 438 NL~kHIeNi~~-fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
++.+.+.+... .++|+|++.|+.....+. +.+...++++..+.. ++.+. ++=|.|-.++-+.+++
T Consensus 93 ~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~ 160 (163)
T cd04176 93 PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETS--AKSKTMVNELFAEIVR 160 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEec--CCCCCCHHHHHHHHHH
Confidence 33344444433 689999999997653322 223446667767764 44433 3344666666555543
No 492
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.40 E-value=32 Score=38.48 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=26.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l 109 (564)
++.|++.| |-|.|||||..-|+-.|. ..|+++..+-
T Consensus 241 ~~vI~LVG----ptGvGKTTTiaKLA~~L~-~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIG----PTGVGKTTTLAKMAWQFH-GKKKTVGFIT 276 (436)
T ss_pred CcEEEEEC----CCCCcHHHHHHHHHHHHH-HcCCcEEEEe
Confidence 45666666 379999999999998884 6677665443
No 493
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.36 E-value=3.1e+02 Score=30.86 Aligned_cols=140 Identities=14% Similarity=0.204 Sum_probs=70.0
Q ss_pred eecCceeEEeccccchhcccCchHHHHHHHHhhcCCCC---eEEe-----eccccccccccccccccccc-CCCCcceEE
Q 008480 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG---FVVT-----EAGFGADIGAEKFMNIKCRY-SGLTPQCAV 397 (564)
Q Consensus 327 TlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~d---yvVT-----EAGFGaDlGaEKF~dIkcr~-~gl~P~avV 397 (564)
.+.+.=+++|| ..||...-....-+.- ..+ +..| +..||++ ||+.+--=+. .-.+|++++
T Consensus 22 ~i~~~~~i~Hg------p~GC~~~~~~~~~~~~--~~~~~p~~tt~l~e~dvv~G~~---~~L~~aI~~~~~~~~P~~I~ 90 (511)
T TIGR01278 22 SMKNVHAVMHA------PQGDDYVNVMFSMLER--TPNFPPVTTSVVDRRDLARGSQ---TRLVDTVRRVDDRFKPDLIV 90 (511)
T ss_pred hcCCcEEEeeC------CCCccchHHhhhhhhc--CCCCCceeeccCCccceecchH---HHHHHHHHHHHHhcCCCEEE
Confidence 46677789999 4689986432222221 112 2344 5677764 6655432222 235899999
Q ss_pred EEeeh-------------hHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHH-hh----cCCcEEEEecc
Q 008480 398 IVATI-------------RALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT-KA----YGANVVVAVNM 459 (564)
Q Consensus 398 lVaTv-------------RALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi-~~----fGvPvVVAIN~ 459 (564)
|++|+ +-++.. |.+..... . +.+......+-..-+..|.++...- .+ -.-|-|-.|--
T Consensus 91 V~sTC~selIGdDi~~~~~~~~~~-~~pvi~v~--t-~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~ 166 (511)
T TIGR01278 91 VTPSCTSSLLQEDLGNLAAAAGLD-KSKVIVAD--V-NAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGP 166 (511)
T ss_pred EeCCChHHHhccCHHHHHHHhccC-CCcEEEec--C-CCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeC
Confidence 99998 222222 33221110 0 1222221233334444444443221 00 01233444433
Q ss_pred cCCC--cHHHHHHHHHHHHHcCCC
Q 008480 460 FATD--SKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 460 F~tD--T~aEi~~v~~~~~~~G~~ 481 (564)
++.| +.+++..|+++.++.|+.
T Consensus 167 ~~l~~~~~~D~~elkrlL~~lGi~ 190 (511)
T TIGR01278 167 ASLGFHHRHDLIELRRLLKTLGIE 190 (511)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCe
Confidence 3333 677788889999999996
No 494
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.32 E-value=2.6e+02 Score=28.83 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=44.7
Q ss_pred cccccccHHHHHHHHhhHHHHHHHHhh--------------------cCCcEEEE--ecccCCCcHHHHHHHHHHHHHcC
Q 008480 422 HAYLNENVALVEAGCVNLARHIANTKA--------------------YGANVVVA--VNMFATDSKAELNAVRNAAMAAG 479 (564)
Q Consensus 422 ~~l~~eNl~aLe~G~~NL~kHIeNi~~--------------------fGvPvVVA--IN~F~tDT~aEi~~v~~~~~~~G 479 (564)
.++-++|.+++.+=+..|.+-++...+ ||+.++-. ++.-..=|..+|..+.+.+++.+
T Consensus 149 ~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~ 228 (286)
T cd01019 149 AATYAANLEAFNARLAELDATIKERLAPVKTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKG 228 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 566678889998888888887775422 45543322 22233446777777777777777
Q ss_pred CCeEEEcCccc
Q 008480 480 AFDAVVCSHHA 490 (564)
Q Consensus 480 ~~~~~vs~~wa 490 (564)
+. +++++.+.
T Consensus 229 v~-~If~e~~~ 238 (286)
T cd01019 229 AT-CVFAEPQF 238 (286)
T ss_pred Cc-EEEecCCC
Confidence 76 66666654
No 495
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.28 E-value=40 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=26.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.++|-|||.+ |||||+-=|++.| ...|+++.
T Consensus 121 ~~vIaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 151 (473)
T PRK00141 121 RTWLAVTGTN------GKTTTTAMLAAMM-QEGGFAAQ 151 (473)
T ss_pred CCEEEEeCCC------cHHHHHHHHHHHH-HhcCCcEE
Confidence 3788888876 9999999999999 48888764
No 496
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=34.15 E-value=1.8e+02 Score=27.51 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=44.2
Q ss_pred HhhH-HHHHHHHhhc--CCcEEEEecccCCCcH------------HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHH
Q 008480 436 CVNL-ARHIANTKAY--GANVVVAVNMFATDSK------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 500 (564)
Q Consensus 436 ~~NL-~kHIeNi~~f--GvPvVVAIN~F~tDT~------------aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA 500 (564)
|.|+ .+.++.++++ ++|+|++-|+-.-..+ -+-+...++|++.+.. ...+.=|+=|+|-.++=
T Consensus 88 f~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~--~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 88 YENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA--AYIECSSKTQQNVKAVF 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC--EEEECCCCcccCHHHHH
Confidence 3344 3445555543 7999999998653111 1233456778877763 13355577888888887
Q ss_pred HHHHHHhhc
Q 008480 501 IAVQRACEN 509 (564)
Q Consensus 501 ~~Vvea~e~ 509 (564)
+.+++.+.+
T Consensus 166 ~~~~~~~~~ 174 (176)
T cd04133 166 DAAIKVVLQ 174 (176)
T ss_pred HHHHHHHhc
Confidence 777776533
No 497
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=33.99 E-value=1.9e+02 Score=26.86 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=30.6
Q ss_pred CCcEEEEecccCCCcHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 450 GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi--------------~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++|+|++.|+..-..++|+ +..++++++.+...+. +.=|+=|+|-.++-+.++++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~--e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 105 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYV--ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE--EecCCCCCCHHHHHHHHHHH
Confidence 7999999998764222221 1223455555532133 33345667777776666653
No 498
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=33.96 E-value=23 Score=34.72 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=22.6
Q ss_pred EEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCc
Q 008480 454 VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (564)
Q Consensus 454 VVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~ 488 (564)
.|.|--|-+=++.++++++.++...+-. +++-+.
T Consensus 259 ~i~IDE~QD~s~~Q~~il~~l~~~~~~~-~~vGD~ 292 (315)
T PF00580_consen 259 HILIDEFQDTSPLQLRILKKLFKNPENL-FIVGDP 292 (315)
T ss_dssp EEEESSGGG-BHHHHHHHHHHHTTTTTE-EEEE-G
T ss_pred eEEeEccccCCHHHHHHHHHHHHhhcee-EEeCCC
Confidence 5778888888889998888888754332 444443
No 499
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=33.72 E-value=1.3e+02 Score=26.89 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=12.0
Q ss_pred cCCcEEEEecccCC
Q 008480 449 YGANVVVAVNMFAT 462 (564)
Q Consensus 449 fGvPvVVAIN~F~t 462 (564)
.++|++|++|+-..
T Consensus 106 ~~~p~ilv~NK~D~ 119 (167)
T cd04160 106 EGVPLLILANKQDL 119 (167)
T ss_pred cCCCEEEEEEcccc
Confidence 58999999998754
No 500
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=33.71 E-value=22 Score=34.93 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=14.5
Q ss_pred CCCCCcchhHHHHHHHHh
Q 008480 81 PLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~ 98 (564)
.+|.||||+...|++.|+
T Consensus 3 VsG~GKStvg~~lA~~lg 20 (161)
T COG3265 3 VSGSGKSTVGSALAERLG 20 (161)
T ss_pred CCccCHHHHHHHHHHHcC
Confidence 368999998888888774
Done!