Query 008480
Match_columns 564
No_of_seqs 205 out of 1084
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 5E-229 2E-233 1788.0 35.5 465 28-560 2-467 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 1E-217 4E-222 1710.0 34.6 479 14-560 2-481 (557)
3 2eo2_A Adult MALE hypothalamus 100.0 4E-30 1.4E-34 210.8 5.3 70 162-232 2-71 (71)
4 3cio_A ETK, tyrosine-protein k 97.0 0.00031 1.1E-08 69.7 3.7 52 67-122 102-156 (299)
5 3bfv_A CAPA1, CAPB2, membrane 96.9 0.00044 1.5E-08 67.7 3.8 52 67-122 80-134 (271)
6 3la6_A Tyrosine-protein kinase 96.6 0.001 3.5E-08 65.9 3.3 52 67-122 90-144 (286)
7 3zq6_A Putative arsenical pump 95.6 0.0072 2.5E-07 60.3 4.2 53 67-123 10-65 (324)
8 1hyq_A MIND, cell division inh 95.5 0.0068 2.3E-07 57.1 3.2 50 69-122 2-54 (263)
9 1g3q_A MIND ATPase, cell divis 95.4 0.0076 2.6E-07 55.6 3.0 50 69-122 2-54 (237)
10 3q9l_A Septum site-determining 95.3 0.0079 2.7E-07 56.1 2.7 50 69-122 2-54 (260)
11 3ea0_A ATPase, para family; al 95.0 0.02 6.8E-07 52.9 4.6 37 68-108 3-40 (245)
12 3end_A Light-independent proto 94.7 0.024 8.2E-07 55.1 4.5 41 67-112 39-79 (307)
13 1byi_A Dethiobiotin synthase; 94.5 0.018 6.2E-07 52.7 3.1 34 70-107 2-35 (224)
14 2woo_A ATPase GET3; tail-ancho 94.5 0.016 5.5E-07 58.1 2.8 51 68-123 17-70 (329)
15 3k9g_A PF-32 protein; ssgcid, 94.2 0.034 1.2E-06 52.7 4.3 37 67-108 25-61 (267)
16 4tmk_A Protein (thymidylate ki 94.2 0.033 1.1E-06 53.1 4.2 41 68-113 2-42 (213)
17 2ph1_A Nucleotide-binding prot 94.2 0.044 1.5E-06 52.3 4.9 38 67-108 16-53 (262)
18 1wcv_1 SOJ, segregation protei 94.0 0.03 1E-06 53.1 3.4 38 67-108 4-41 (257)
19 2woj_A ATPase GET3; tail-ancho 93.9 0.027 9.1E-07 57.4 3.1 51 68-123 16-71 (354)
20 2oze_A ORF delta'; para, walke 93.7 0.051 1.8E-06 52.3 4.5 39 68-108 33-71 (298)
21 3lv8_A DTMP kinase, thymidylat 93.7 0.05 1.7E-06 52.8 4.5 42 67-113 25-66 (236)
22 2wwf_A Thymidilate kinase, put 93.7 0.057 2E-06 48.7 4.5 47 67-119 8-54 (212)
23 3ld9_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 53.1 3.4 44 66-114 18-62 (223)
24 1nn5_A Similar to deoxythymidy 93.5 0.075 2.6E-06 47.9 4.9 43 67-115 7-49 (215)
25 3ug7_A Arsenical pump-driving 93.4 0.066 2.3E-06 54.2 4.9 53 67-123 23-77 (349)
26 3igf_A ALL4481 protein; two-do 92.6 0.026 8.8E-07 58.6 0.6 54 70-132 3-58 (374)
27 4edh_A DTMP kinase, thymidylat 92.4 0.1 3.4E-06 49.6 4.3 40 68-113 5-44 (213)
28 4dzz_A Plasmid partitioning pr 92.3 0.1 3.5E-06 46.7 4.0 34 71-108 3-36 (206)
29 3fkq_A NTRC-like two-domain pr 92.3 0.11 3.7E-06 52.7 4.6 51 67-121 141-193 (373)
30 1ihu_A Arsenical pump-driving 91.5 0.081 2.8E-06 56.7 2.8 50 68-123 7-59 (589)
31 3of5_A Dethiobiotin synthetase 91.4 0.085 2.9E-06 50.5 2.6 37 70-112 5-41 (228)
32 3io3_A DEHA2D07832P; chaperone 91.2 0.17 5.7E-06 51.8 4.7 52 67-123 16-71 (348)
33 3fwy_A Light-independent proto 91.2 0.18 6.1E-06 50.8 4.8 49 67-120 46-94 (314)
34 1cp2_A CP2, nitrogenase iron p 91.2 0.14 4.9E-06 48.2 3.9 27 81-108 9-35 (269)
35 3iqw_A Tail-anchored protein t 91.1 0.15 5.1E-06 51.8 4.2 48 70-122 17-66 (334)
36 3cwq_A Para family chromosome 90.9 0.19 6.5E-06 46.6 4.4 33 71-108 2-34 (209)
37 2afh_E Nitrogenase iron protei 90.8 0.16 5.4E-06 48.9 3.9 34 70-108 3-36 (289)
38 3qxc_A Dethiobiotin synthetase 90.8 0.19 6.5E-06 49.0 4.4 37 67-107 19-55 (242)
39 3kjh_A CO dehydrogenase/acetyl 90.8 0.092 3.1E-06 48.1 2.0 41 81-122 8-50 (254)
40 3v9p_A DTMP kinase, thymidylat 90.5 0.19 6.6E-06 48.5 4.1 43 67-115 23-69 (227)
41 3fgn_A Dethiobiotin synthetase 90.2 0.12 4.2E-06 50.6 2.5 43 60-107 18-60 (251)
42 2xj4_A MIPZ; replication, cell 90.2 0.2 6.9E-06 48.5 4.0 36 69-108 4-39 (286)
43 2xxa_A Signal recognition part 90.0 0.23 7.9E-06 52.3 4.5 36 68-108 99-135 (433)
44 1zu4_A FTSY; GTPase, signal re 89.7 0.26 8.8E-06 49.7 4.5 37 67-108 103-139 (320)
45 2qor_A Guanylate kinase; phosp 88.8 0.28 9.6E-06 44.8 3.7 47 67-117 10-56 (204)
46 2plr_A DTMP kinase, probable t 88.5 0.38 1.3E-05 43.0 4.2 37 69-112 4-40 (213)
47 2z0h_A DTMP kinase, thymidylat 88.4 0.4 1.4E-05 42.5 4.2 37 71-113 2-38 (197)
48 3t1o_A Gliding protein MGLA; G 87.7 2.5 8.5E-05 36.6 8.9 73 433-508 116-191 (198)
49 2px0_A Flagellar biosynthesis 87.6 0.52 1.8E-05 46.8 5.0 38 67-108 103-140 (296)
50 2yvu_A Probable adenylyl-sulfa 87.4 0.58 2E-05 41.7 4.8 42 60-106 4-45 (186)
51 1vma_A Cell division protein F 86.7 0.56 1.9E-05 47.1 4.7 37 67-108 102-138 (306)
52 3tmk_A Thymidylate kinase; pho 86.6 0.48 1.6E-05 45.4 4.0 37 68-113 4-40 (216)
53 3pg5_A Uncharacterized protein 86.1 0.36 1.2E-05 48.9 2.9 30 78-108 7-36 (361)
54 2efe_B Small GTP-binding prote 86.0 1.4 4.9E-05 37.8 6.3 68 438-508 102-174 (181)
55 1xjc_A MOBB protein homolog; s 85.9 0.75 2.6E-05 42.8 4.7 39 70-113 5-43 (169)
56 3kl4_A SRP54, signal recogniti 85.9 0.55 1.9E-05 49.8 4.3 35 68-107 96-130 (433)
57 4hlc_A DTMP kinase, thymidylat 85.1 0.63 2.2E-05 43.8 3.9 38 69-113 2-39 (205)
58 3tau_A Guanylate kinase, GMP k 85.1 0.51 1.7E-05 43.5 3.2 45 67-115 6-50 (208)
59 3dm5_A SRP54, signal recogniti 84.7 0.76 2.6E-05 49.0 4.7 36 68-108 99-134 (443)
60 2b8t_A Thymidine kinase; deoxy 84.7 0.73 2.5E-05 44.4 4.2 44 67-117 10-53 (223)
61 3a1s_A Iron(II) transport prot 84.7 0.74 2.5E-05 44.4 4.3 87 443-534 103-193 (258)
62 3iby_A Ferrous iron transport 84.0 1.2 4.2E-05 42.8 5.5 81 443-533 103-184 (256)
63 2ocp_A DGK, deoxyguanosine kin 83.8 0.65 2.2E-05 43.5 3.3 39 68-116 1-39 (241)
64 2r8r_A Sensor protein; KDPD, P 83.6 1.3 4.4E-05 43.5 5.5 42 67-112 3-44 (228)
65 3ez2_A Plasmid partition prote 83.6 0.81 2.8E-05 46.3 4.2 52 428-480 280-336 (398)
66 3a00_A Guanylate kinase, GMP k 83.0 1 3.5E-05 40.5 4.2 45 69-117 1-45 (186)
67 4eaq_A DTMP kinase, thymidylat 82.7 1.1 3.7E-05 42.5 4.5 43 67-116 24-66 (229)
68 2wjg_A FEOB, ferrous iron tran 82.4 0.94 3.2E-05 39.5 3.6 69 439-510 101-170 (188)
69 3c5h_A Glucocorticoid receptor 82.3 4.7 0.00016 38.2 8.7 56 449-507 197-253 (255)
70 1ls1_A Signal recognition part 82.1 1.1 3.6E-05 44.4 4.3 36 68-108 97-132 (295)
71 3ez9_A Para; DNA binding, wing 81.9 0.81 2.8E-05 46.5 3.4 53 428-481 283-340 (403)
72 2gf9_A RAS-related protein RAB 81.7 2 6.8E-05 37.7 5.5 68 438-508 112-184 (189)
73 2ffh_A Protein (FFH); SRP54, s 81.5 1.2 4.1E-05 47.0 4.7 35 68-107 97-131 (425)
74 1j8m_F SRP54, signal recogniti 81.5 1.3 4.4E-05 44.1 4.7 35 69-108 98-132 (297)
75 3iev_A GTP-binding protein ERA 81.3 6.8 0.00023 38.5 9.7 88 443-533 115-206 (308)
76 1qhx_A CPT, protein (chloramph 81.2 0.77 2.6E-05 40.2 2.6 26 69-98 3-28 (178)
77 3i8s_A Ferrous iron transport 80.8 1.6 5.4E-05 42.3 4.9 85 443-533 105-190 (274)
78 2v3c_C SRP54, signal recogniti 80.7 1.1 3.7E-05 47.2 3.9 35 69-108 99-133 (432)
79 2yc2_C IFT27, small RAB-relate 80.6 2.7 9.2E-05 36.9 5.9 69 437-508 113-191 (208)
80 1xx6_A Thymidine kinase; NESG, 80.2 1.5 5.3E-05 41.0 4.4 46 67-119 6-51 (191)
81 2obn_A Hypothetical protein; s 80.0 2.4 8.1E-05 44.0 6.1 95 389-504 250-347 (349)
82 2hk0_A D-psicose 3-epimerase; 80.0 10 0.00036 36.3 10.4 105 426-533 96-223 (309)
83 1g16_A RAS-related protein SEC 79.7 4.3 0.00015 34.2 6.7 58 449-509 107-165 (170)
84 1a7j_A Phosphoribulokinase; tr 79.5 1.5 5.3E-05 43.2 4.4 27 68-98 4-30 (290)
85 2ce2_X GTPase HRAS; signaling 79.5 4.1 0.00014 33.8 6.4 57 449-508 107-164 (166)
86 2orw_A Thymidine kinase; TMTK, 79.2 1.8 6E-05 39.8 4.4 43 69-118 3-45 (184)
87 3tkl_A RAS-related protein RAB 79.1 4.6 0.00016 35.1 6.9 68 438-508 106-178 (196)
88 1kht_A Adenylate kinase; phosp 78.9 1.2 4.3E-05 38.9 3.2 26 69-98 3-28 (192)
89 1yrb_A ATP(GTP)binding protein 78.7 1.4 4.8E-05 41.0 3.6 43 68-113 10-52 (262)
90 1np6_A Molybdopterin-guanine d 78.6 2.1 7.1E-05 39.5 4.7 38 70-112 7-44 (174)
91 3a4m_A L-seryl-tRNA(SEC) kinas 78.6 1.5 5.1E-05 42.0 3.9 34 68-106 3-36 (260)
92 1ega_A Protein (GTP-binding pr 78.5 11 0.00038 36.9 10.2 63 445-509 111-175 (301)
93 2fu5_C RAS-related protein RAB 78.5 3.3 0.00011 35.7 5.8 68 438-508 98-170 (183)
94 3c5c_A RAS-like protein 12; GD 78.4 3.3 0.00011 36.7 5.8 57 449-508 126-185 (187)
95 1kgd_A CASK, peripheral plasma 78.1 1.6 5.4E-05 39.2 3.7 44 68-115 4-47 (180)
96 2nzj_A GTP-binding protein REM 78.1 5.3 0.00018 33.8 6.9 68 438-508 95-168 (175)
97 1wms_A RAB-9, RAB9, RAS-relate 77.8 6.4 0.00022 33.5 7.3 57 449-508 115-173 (177)
98 3kws_A Putative sugar isomeras 77.6 20 0.0007 33.7 11.4 107 424-533 91-218 (287)
99 3b1v_A Ferrous iron uptake tra 77.4 3.5 0.00012 40.3 6.2 86 444-534 101-189 (272)
100 2pbr_A DTMP kinase, thymidylat 77.3 2.4 8.2E-05 37.2 4.6 37 71-113 2-38 (195)
101 2rhm_A Putative kinase; P-loop 77.3 1.5 5.1E-05 38.7 3.2 27 67-97 3-29 (193)
102 3bc1_A RAS-related protein RAB 77.3 5 0.00017 34.5 6.5 68 438-508 111-184 (195)
103 1c1y_A RAS-related protein RAP 77.3 7.1 0.00024 32.7 7.4 56 449-507 107-165 (167)
104 2j9r_A Thymidine kinase; TK1, 77.1 2.3 8E-05 41.2 4.8 46 67-119 26-71 (214)
105 2v54_A DTMP kinase, thymidylat 77.1 1.3 4.6E-05 39.4 2.9 41 68-116 3-43 (204)
106 1e6c_A Shikimate kinase; phosp 76.9 1.2 4.3E-05 38.6 2.6 25 70-98 3-27 (173)
107 3hjn_A DTMP kinase, thymidylat 76.9 1.4 4.8E-05 41.0 3.1 31 81-113 8-38 (197)
108 2j37_W Signal recognition part 76.7 1.8 6.1E-05 46.7 4.2 35 69-108 101-135 (504)
109 2g6b_A RAS-related protein RAB 76.6 8.2 0.00028 32.9 7.6 69 438-509 101-174 (180)
110 1lvg_A Guanylate kinase, GMP k 76.4 1.7 5.9E-05 39.8 3.5 45 68-116 3-47 (198)
111 1kao_A RAP2A; GTP-binding prot 76.3 5.8 0.0002 33.0 6.5 57 449-508 107-165 (167)
112 1z0f_A RAB14, member RAS oncog 76.1 4.5 0.00015 34.4 5.8 66 439-507 109-176 (179)
113 3ney_A 55 kDa erythrocyte memb 76.0 2.1 7.2E-05 40.6 4.1 45 68-116 18-62 (197)
114 1nks_A Adenylate kinase; therm 76.0 2.5 8.6E-05 36.9 4.3 30 70-104 2-31 (194)
115 3trf_A Shikimate kinase, SK; a 76.0 1.5 5.2E-05 38.7 2.9 26 68-97 4-29 (185)
116 3lnc_A Guanylate kinase, GMP k 75.9 1.5 5.1E-05 40.7 2.9 46 67-117 25-71 (231)
117 2qw5_A Xylose isomerase-like T 75.8 7.6 0.00026 37.8 8.1 117 385-520 73-217 (335)
118 2a9k_A RAS-related protein RAL 75.7 4.2 0.00014 34.8 5.6 57 449-508 122-180 (187)
119 1gtv_A TMK, thymidylate kinase 75.7 0.94 3.2E-05 40.7 1.5 38 70-113 1-38 (214)
120 3q72_A GTP-binding protein RAD 75.5 7 0.00024 32.9 6.9 69 437-508 89-163 (166)
121 3bdk_A D-mannonate dehydratase 75.5 7.9 0.00027 40.4 8.5 25 432-456 99-123 (386)
122 3clv_A RAB5 protein, putative; 75.4 6.8 0.00023 33.7 6.8 68 438-508 134-203 (208)
123 3kkq_A RAS-related protein M-R 75.4 9.9 0.00034 32.7 7.9 59 447-508 120-181 (183)
124 1r5b_A Eukaryotic peptide chai 75.2 7.9 0.00027 40.6 8.6 44 438-481 168-221 (467)
125 2c95_A Adenylate kinase 1; tra 75.0 1.9 6.5E-05 38.1 3.3 27 68-98 8-34 (196)
126 3jvv_A Twitching mobility prot 74.9 2.1 7.3E-05 43.8 4.1 41 68-113 122-162 (356)
127 3kb2_A SPBC2 prophage-derived 74.6 1.8 6E-05 37.3 2.9 23 71-97 3-25 (173)
128 1u8z_A RAS-related protein RAL 74.5 6.9 0.00024 32.6 6.5 57 449-508 108-166 (168)
129 3con_A GTPase NRAS; structural 74.5 7.4 0.00025 33.9 6.9 57 449-508 125-182 (190)
130 3tva_A Xylose isomerase domain 74.4 9.7 0.00033 35.9 8.2 95 431-533 96-205 (290)
131 1ihu_A Arsenical pump-driving 74.4 2.4 8E-05 45.4 4.4 49 68-120 325-375 (589)
132 3vaa_A Shikimate kinase, SK; s 74.3 2 6.7E-05 39.0 3.3 27 67-97 23-49 (199)
133 3cm0_A Adenylate kinase; ATP-b 74.2 1.6 5.4E-05 38.5 2.6 26 68-97 3-28 (186)
134 1z06_A RAS-related protein RAB 74.1 4 0.00014 35.8 5.1 59 448-507 125-186 (189)
135 3e1s_A Exodeoxyribonuclease V, 74.1 2.5 8.5E-05 45.9 4.5 36 68-108 203-238 (574)
136 3uie_A Adenylyl-sulfate kinase 74.0 2 6.8E-05 39.0 3.2 33 67-104 23-55 (200)
137 2vli_A Antibiotic resistance p 74.0 1.6 5.6E-05 38.2 2.5 27 68-98 4-30 (183)
138 3sjy_A Translation initiation 73.5 11 0.00037 38.4 8.9 68 438-508 116-191 (403)
139 3cph_A RAS-related protein SEC 73.4 6.9 0.00023 34.6 6.5 68 438-508 110-181 (213)
140 2y8e_A RAB-protein 6, GH09086P 73.0 4.9 0.00017 34.1 5.3 57 448-507 117-175 (179)
141 2fg5_A RAB-22B, RAS-related pr 72.9 4.4 0.00015 35.8 5.1 68 438-508 113-185 (192)
142 2bcg_Y Protein YP2, GTP-bindin 72.5 7.9 0.00027 34.3 6.7 58 448-508 111-170 (206)
143 2j41_A Guanylate kinase; GMP, 72.3 2.6 8.9E-05 37.5 3.5 27 67-97 4-30 (207)
144 3cpj_B GTP-binding protein YPT 72.2 4.6 0.00016 36.7 5.2 69 438-509 103-176 (223)
145 1knq_A Gluconate kinase; ALFA/ 72.0 2.7 9.2E-05 36.8 3.5 27 67-97 6-32 (175)
146 3pqc_A Probable GTP-binding pr 71.9 12 0.00042 32.1 7.7 64 443-508 126-193 (195)
147 1i60_A IOLI protein; beta barr 71.8 19 0.00064 33.3 9.4 90 428-520 75-175 (278)
148 3t5g_A GTP-binding protein RHE 71.8 8 0.00027 33.3 6.4 60 447-509 108-169 (181)
149 1ky3_A GTP-binding protein YPT 71.7 17 0.00059 30.7 8.5 57 449-508 117-177 (182)
150 1z2a_A RAS-related protein RAB 71.6 6.7 0.00023 32.9 5.7 67 438-507 95-165 (168)
151 3iij_A Coilin-interacting nucl 71.6 2.3 7.8E-05 37.5 2.9 26 68-97 10-35 (180)
152 1r2q_A RAS-related protein RAB 71.5 4.7 0.00016 33.8 4.8 68 437-507 95-167 (170)
153 2atx_A Small GTP binding prote 71.5 16 0.00056 31.8 8.5 65 441-507 111-191 (194)
154 2bov_A RAla, RAS-related prote 71.4 9.7 0.00033 33.3 7.0 57 449-508 118-176 (206)
155 3k53_A Ferrous iron transport 71.2 11 0.00037 35.9 7.8 88 445-537 103-195 (271)
156 3q85_A GTP-binding protein REM 71.1 8 0.00027 32.6 6.2 70 436-508 91-166 (169)
157 2a5j_A RAS-related protein RAB 71.1 7.7 0.00026 34.1 6.3 67 438-507 111-182 (191)
158 2pez_A Bifunctional 3'-phospho 70.5 3.5 0.00012 36.4 3.9 35 67-106 3-37 (179)
159 1wb1_A Translation elongation 70.2 14 0.00049 39.0 9.1 66 440-508 115-188 (482)
160 1z08_A RAS-related protein RAB 70.1 6.7 0.00023 33.1 5.5 57 448-507 109-167 (170)
161 1zbd_A Rabphilin-3A; G protein 70.0 6.7 0.00023 34.6 5.6 68 438-508 98-170 (203)
162 2qmh_A HPR kinase/phosphorylas 69.8 1.8 6.2E-05 42.0 2.0 40 68-111 33-72 (205)
163 1m7g_A Adenylylsulfate kinase; 69.7 4.1 0.00014 37.2 4.3 36 67-106 23-58 (211)
164 1qtw_A Endonuclease IV; DNA re 69.6 24 0.00081 32.9 9.6 95 424-520 76-180 (285)
165 1tev_A UMP-CMP kinase; ploop, 69.6 2.5 8.7E-05 36.9 2.8 25 69-97 3-27 (196)
166 3bos_A Putative DNA replicatio 69.5 4.2 0.00014 36.5 4.2 33 67-104 50-82 (242)
167 2bwj_A Adenylate kinase 5; pho 69.2 3 0.0001 36.9 3.2 26 68-97 11-36 (199)
168 1gvn_B Zeta; postsegregational 69.2 3.2 0.00011 40.7 3.6 27 67-97 31-57 (287)
169 4eun_A Thermoresistant glucoki 69.1 3 0.0001 37.8 3.3 27 67-97 27-53 (200)
170 1kag_A SKI, shikimate kinase I 69.0 2.4 8.1E-05 36.9 2.4 25 69-97 4-28 (173)
171 2e87_A Hypothetical protein PH 68.8 21 0.00073 35.6 9.6 57 450-509 280-336 (357)
172 2f7s_A C25KG, RAS-related prot 68.5 11 0.00036 33.8 6.7 69 437-508 124-198 (217)
173 3ec2_A DNA replication protein 68.3 3 0.0001 36.8 3.0 34 67-104 36-69 (180)
174 3vni_A Xylose isomerase domain 68.3 22 0.00076 33.4 9.2 107 424-533 75-204 (294)
175 4dhe_A Probable GTP-binding pr 68.1 19 0.00064 32.2 8.3 67 442-509 136-211 (223)
176 3tr0_A Guanylate kinase, GMP k 67.7 3.9 0.00013 36.4 3.7 27 67-97 5-31 (205)
177 1z0j_A RAB-22, RAS-related pro 67.6 14 0.00047 31.0 6.9 57 448-507 109-167 (170)
178 1rz3_A Hypothetical protein rb 67.6 5.2 0.00018 36.4 4.5 28 67-98 20-47 (201)
179 1qf9_A UMP/CMP kinase, protein 67.3 3.9 0.00013 35.7 3.5 26 68-97 5-30 (194)
180 3a8t_A Adenylate isopentenyltr 67.3 1.9 6.4E-05 44.6 1.6 28 67-98 38-65 (339)
181 1of1_A Thymidine kinase; trans 67.2 2.3 8E-05 44.4 2.3 38 67-112 47-84 (376)
182 3dz8_A RAS-related protein RAB 67.0 11 0.00036 33.1 6.3 57 449-508 127-185 (191)
183 1vg8_A RAS-related protein RAB 66.9 19 0.00066 31.5 7.9 57 449-508 116-174 (207)
184 2il1_A RAB12; G-protein, GDP, 66.7 8.4 0.00029 34.0 5.6 63 443-508 124-189 (192)
185 1ukz_A Uridylate kinase; trans 66.7 3.1 0.00011 37.3 2.8 27 67-97 13-39 (203)
186 2p67_A LAO/AO transport system 66.6 6 0.00021 39.5 5.1 42 67-113 54-95 (341)
187 1y63_A LMAJ004144AAA protein; 66.5 3.3 0.00011 37.1 2.9 26 67-96 8-33 (184)
188 3t61_A Gluconokinase; PSI-biol 66.5 3.6 0.00012 37.0 3.2 26 68-97 17-42 (202)
189 2oil_A CATX-8, RAS-related pro 66.5 10 0.00035 33.1 6.0 68 438-508 115-187 (193)
190 1osn_A Thymidine kinase, VZV-T 66.0 2.3 7.9E-05 43.8 2.0 39 67-112 10-49 (341)
191 2gco_A H9, RHO-related GTP-bin 66.0 24 0.00081 31.3 8.4 65 441-507 118-198 (201)
192 3lmz_A Putative sugar isomeras 65.9 5.4 0.00018 37.3 4.3 89 436-533 88-183 (257)
193 2p5t_B PEZT; postsegregational 65.7 3.5 0.00012 39.2 3.0 28 66-97 29-56 (253)
194 1zp6_A Hypothetical protein AT 65.6 3.4 0.00012 36.5 2.8 25 67-95 7-31 (191)
195 3bwd_D RAC-like GTP-binding pr 65.5 14 0.00047 31.6 6.5 56 450-507 112-179 (182)
196 2iyv_A Shikimate kinase, SK; t 65.5 3.3 0.00011 36.5 2.7 25 70-98 3-27 (184)
197 1tz9_A Mannonate dehydratase; 65.5 15 0.00052 36.7 7.8 29 432-461 90-118 (367)
198 2fn4_A P23, RAS-related protei 65.2 9.7 0.00033 32.3 5.5 59 447-508 111-171 (181)
199 1lnz_A SPO0B-associated GTP-bi 65.1 19 0.00065 36.5 8.5 78 438-522 257-341 (342)
200 1x3s_A RAS-related protein RAB 65.1 13 0.00046 32.0 6.5 70 437-509 104-178 (195)
201 3p32_A Probable GTPase RV1496/ 65.1 6.7 0.00023 39.4 5.1 42 67-113 77-118 (355)
202 3c8f_A Pyruvate formate-lyase 65.0 26 0.00088 31.8 8.6 56 438-493 148-206 (245)
203 2j0v_A RAC-like GTP-binding pr 64.9 12 0.00041 33.3 6.3 67 441-509 102-180 (212)
204 3c8u_A Fructokinase; YP_612366 64.8 5.1 0.00018 36.6 3.9 28 67-98 20-47 (208)
205 2x7v_A Probable endonuclease 4 64.6 31 0.0011 32.1 9.3 93 425-519 77-178 (287)
206 2o52_A RAS-related protein RAB 64.4 8.2 0.00028 34.4 5.1 58 448-508 128-187 (200)
207 3u0h_A Xylose isomerase domain 64.3 17 0.0006 33.6 7.5 86 431-520 78-180 (281)
208 3tw8_B RAS-related protein RAB 64.3 16 0.00054 31.0 6.7 67 439-508 100-170 (181)
209 2dr3_A UPF0273 protein PH0284; 64.2 7.4 0.00025 35.3 4.8 34 67-105 21-54 (247)
210 3fst_A 5,10-methylenetetrahydr 64.2 5.4 0.00018 40.4 4.3 114 354-481 168-293 (304)
211 2yv5_A YJEQ protein; hydrolase 64.1 16 0.00056 35.9 7.6 60 438-500 98-160 (302)
212 2elf_A Protein translation elo 64.0 13 0.00044 38.0 7.1 70 438-508 99-179 (370)
213 1e2k_A Thymidine kinase; trans 63.9 2.4 8.3E-05 43.4 1.7 39 67-113 2-40 (331)
214 2atv_A RERG, RAS-like estrogen 63.9 10 0.00036 33.4 5.6 57 449-508 131-190 (196)
215 2hxs_A RAB-26, RAS-related pro 63.8 9.2 0.00031 32.6 5.1 56 450-508 114-172 (178)
216 2ew1_A RAS-related protein RAB 63.7 11 0.00039 34.0 6.0 58 448-508 129-188 (201)
217 2w0m_A SSO2452; RECA, SSPF, un 63.2 7.4 0.00025 34.7 4.6 27 67-97 21-47 (235)
218 2gf0_A GTP-binding protein DI- 62.8 12 0.0004 32.6 5.6 58 449-509 113-171 (199)
219 1zak_A Adenylate kinase; ATP:A 62.7 4.3 0.00015 37.2 3.0 28 67-98 3-30 (222)
220 2ze6_A Isopentenyl transferase 62.7 3.7 0.00013 39.3 2.6 24 70-97 2-25 (253)
221 1g5t_A COB(I)alamin adenosyltr 62.4 4.1 0.00014 39.0 2.8 36 67-108 27-62 (196)
222 1aky_A Adenylate kinase; ATP:A 62.3 4.5 0.00015 37.0 3.0 27 68-98 3-29 (220)
223 2jaq_A Deoxyguanosine kinase; 62.2 4.6 0.00016 35.6 3.0 24 71-98 2-25 (205)
224 2p5s_A RAS and EF-hand domain 62.0 15 0.00053 32.4 6.4 62 444-508 127-196 (199)
225 2cdn_A Adenylate kinase; phosp 61.7 5.8 0.0002 35.7 3.6 28 67-98 18-45 (201)
226 4djt_A GTP-binding nuclear pro 61.4 14 0.00048 33.0 6.1 65 442-509 109-175 (218)
227 1u0l_A Probable GTPase ENGC; p 61.4 25 0.00084 34.5 8.3 61 438-501 103-165 (301)
228 3ihw_A Centg3; RAS, centaurin, 61.3 29 0.00098 30.6 8.0 70 437-508 102-179 (184)
229 2qul_A D-tagatose 3-epimerase; 61.1 28 0.00096 32.5 8.3 92 426-520 77-186 (290)
230 3can_A Pyruvate-formate lyase- 61.1 21 0.00072 31.7 7.1 56 438-493 80-139 (182)
231 2j1l_A RHO-related GTP-binding 61.1 29 0.001 31.2 8.2 65 443-509 129-209 (214)
232 2erx_A GTP-binding protein DI- 60.8 7.5 0.00026 32.6 3.9 57 449-508 108-166 (172)
233 3avx_A Elongation factor TS, e 60.7 23 0.00079 42.6 9.2 101 377-508 368-485 (1289)
234 1u94_A RECA protein, recombina 60.5 5.8 0.0002 40.6 3.7 35 67-106 61-95 (356)
235 2bme_A RAB4A, RAS-related prot 60.5 9.4 0.00032 32.8 4.6 64 442-508 107-172 (186)
236 3qc0_A Sugar isomerase; TIM ba 60.2 61 0.0021 29.8 10.4 103 426-532 72-195 (275)
237 1jny_A EF-1-alpha, elongation 60.2 17 0.00057 37.6 7.1 58 438-497 131-201 (435)
238 3foz_A TRNA delta(2)-isopenten 59.8 4.4 0.00015 41.5 2.7 28 67-98 8-35 (316)
239 3exa_A TRNA delta(2)-isopenten 59.8 3.8 0.00013 42.2 2.2 26 69-98 3-28 (322)
240 3be4_A Adenylate kinase; malar 59.8 4.3 0.00015 37.3 2.4 27 67-97 3-29 (217)
241 4dsu_A GTPase KRAS, isoform 2B 59.6 23 0.00079 30.2 6.9 57 449-508 108-165 (189)
242 3lw7_A Adenylate kinase relate 59.5 4.7 0.00016 34.1 2.5 20 70-93 2-21 (179)
243 2whl_A Beta-mannanase, baman5; 59.5 25 0.00087 33.7 7.9 55 440-495 34-92 (294)
244 3cqj_A L-ribulose-5-phosphate 59.4 57 0.002 30.7 10.2 104 426-533 97-216 (295)
245 3gj0_A GTP-binding nuclear pro 59.2 7.7 0.00026 35.0 4.0 69 438-509 105-175 (221)
246 1p6x_A Thymidine kinase; P-loo 59.1 3.4 0.00011 42.4 1.7 124 426-552 187-323 (334)
247 1zj6_A ADP-ribosylation factor 59.1 20 0.00069 31.1 6.5 58 449-509 116-178 (187)
248 3ug7_A Arsenical pump-driving 58.9 25 0.00086 35.3 8.0 83 438-531 253-346 (349)
249 1ojl_A Transcriptional regulat 58.8 2.1 7.3E-05 42.1 0.2 154 69-246 25-228 (304)
250 3cbq_A GTP-binding protein REM 58.6 19 0.00065 32.1 6.4 69 438-509 114-188 (195)
251 3ayv_A Putative uncharacterize 58.3 58 0.002 30.0 9.9 90 423-520 62-163 (254)
252 2ga8_A Hypothetical 39.9 kDa p 58.3 5.9 0.0002 41.2 3.4 27 68-98 21-49 (359)
253 1w36_D RECD, exodeoxyribonucle 58.3 7.4 0.00025 42.3 4.3 27 68-98 163-189 (608)
254 2hup_A RAS-related protein RAB 58.2 24 0.00082 31.4 7.0 69 438-508 119-192 (201)
255 3oes_A GTPase rhebl1; small GT 58.2 13 0.00046 32.8 5.3 58 449-509 128-187 (201)
256 2h57_A ADP-ribosylation factor 57.9 27 0.00092 30.4 7.2 57 449-508 125-186 (190)
257 2iwr_A Centaurin gamma 1; ANK 57.8 27 0.00092 29.8 7.0 63 443-508 98-168 (178)
258 2obn_A Hypothetical protein; s 57.4 9.1 0.00031 39.7 4.6 37 67-107 150-186 (349)
259 2zej_A Dardarin, leucine-rich 57.4 22 0.00076 31.0 6.6 71 438-508 98-177 (184)
260 3asz_A Uridine kinase; cytidin 57.2 7 0.00024 35.2 3.3 27 67-97 4-30 (211)
261 4e22_A Cytidylate kinase; P-lo 57.1 6 0.00021 37.6 3.0 28 67-98 25-52 (252)
262 1mh1_A RAC1; GTP-binding, GTPa 57.0 29 0.00098 29.6 7.0 65 443-509 100-180 (186)
263 1htw_A HI0065; nucleotide-bind 56.9 6.1 0.00021 35.7 2.8 27 67-97 31-57 (158)
264 2cxx_A Probable GTP-binding pr 56.7 19 0.00064 30.9 5.9 66 443-509 115-184 (190)
265 3hp4_A GDSL-esterase; psychrot 56.6 50 0.0017 28.3 8.6 107 348-481 25-139 (185)
266 3qxb_A Putative xylose isomera 56.5 29 0.001 33.4 7.8 109 424-533 101-238 (316)
267 1zd8_A GTP:AMP phosphotransfer 56.5 5.7 0.00019 36.6 2.6 26 68-97 6-31 (227)
268 1ek0_A Protein (GTP-binding pr 56.1 12 0.0004 31.4 4.3 57 448-507 106-167 (170)
269 2q02_A Putative cytoplasmic pr 56.0 49 0.0017 30.5 9.0 81 437-521 85-172 (272)
270 3r7w_A Gtpase1, GTP-binding pr 55.5 34 0.0011 33.5 8.1 50 441-490 104-165 (307)
271 3obe_A Sugar phosphate isomera 55.3 24 0.00082 34.3 7.0 56 433-490 110-173 (305)
272 1ak2_A Adenylate kinase isoenz 55.2 7.7 0.00026 36.0 3.3 27 67-97 14-40 (233)
273 4bas_A ADP-ribosylation factor 55.2 40 0.0014 29.1 7.8 56 450-508 127-188 (199)
274 2wji_A Ferrous iron transport 55.1 8.4 0.00029 33.2 3.4 62 443-507 101-163 (165)
275 3cny_A Inositol catabolism pro 55.0 70 0.0024 29.9 10.0 86 431-520 84-191 (301)
276 3dx5_A Uncharacterized protein 54.9 46 0.0016 31.1 8.7 97 433-533 80-192 (286)
277 2c78_A Elongation factor TU-A; 54.9 32 0.0011 35.0 8.1 43 438-480 115-163 (405)
278 1via_A Shikimate kinase; struc 54.9 4.7 0.00016 35.4 1.7 24 71-98 6-29 (175)
279 1hyq_A MIND, cell division inh 54.7 26 0.00089 32.5 6.9 80 443-537 154-235 (263)
280 2gk6_A Regulator of nonsense t 54.3 10 0.00036 41.1 4.6 35 69-107 195-229 (624)
281 2fv8_A H6, RHO-related GTP-bin 54.1 36 0.0012 30.2 7.5 64 443-508 120-199 (207)
282 3upu_A ATP-dependent DNA helic 54.0 6.6 0.00023 40.7 2.9 33 71-108 47-79 (459)
283 1ex7_A Guanylate kinase; subst 53.9 7.3 0.00025 36.4 3.0 43 70-116 2-44 (186)
284 2kjq_A DNAA-related protein; s 53.9 16 0.00055 32.2 5.1 39 68-112 35-73 (149)
285 3eph_A TRNA isopentenyltransfe 53.9 6.6 0.00023 41.6 2.9 25 70-98 3-27 (409)
286 3lxx_A GTPase IMAP family memb 53.7 19 0.00064 33.3 5.7 60 449-509 144-214 (239)
287 3qq5_A Small GTP-binding prote 53.7 9.4 0.00032 40.0 4.0 67 440-509 130-196 (423)
288 1p5z_B DCK, deoxycytidine kina 53.1 5 0.00017 38.0 1.7 36 67-112 22-57 (263)
289 4gzl_A RAS-related C3 botulinu 53.0 20 0.00068 32.1 5.6 64 441-506 123-202 (204)
290 3t5d_A Septin-7; GTP-binding p 53.0 18 0.00061 34.6 5.6 60 444-507 139-202 (274)
291 1ly1_A Polynucleotide kinase; 52.9 7 0.00024 33.7 2.5 22 70-95 3-24 (181)
292 1rj9_A FTSY, signal recognitio 52.7 14 0.00049 36.7 5.0 36 67-107 100-135 (304)
293 1x6v_B Bifunctional 3'-phospho 52.6 12 0.0004 41.7 4.8 36 68-108 51-86 (630)
294 3izq_1 HBS1P, elongation facto 51.9 44 0.0015 36.6 9.0 97 377-499 254-362 (611)
295 1m7b_A RND3/RHOE small GTP-bin 51.3 31 0.0011 29.9 6.4 56 450-507 111-181 (184)
296 1svi_A GTP-binding protein YSX 51.3 33 0.0011 29.7 6.6 60 445-507 129-193 (195)
297 3reg_A RHO-like small GTPase; 50.7 28 0.00095 30.4 6.0 65 443-509 118-188 (194)
298 3d3q_A TRNA delta(2)-isopenten 50.6 7.1 0.00024 40.2 2.5 25 70-98 8-32 (340)
299 2qt1_A Nicotinamide riboside k 50.6 8.3 0.00028 34.8 2.7 26 67-96 19-44 (207)
300 2g0t_A Conserved hypothetical 50.5 17 0.00058 37.6 5.3 37 67-107 167-203 (350)
301 3l0i_B RAS-related protein RAB 50.5 4.8 0.00016 35.8 1.0 68 438-508 123-195 (199)
302 3aal_A Probable endonuclease 4 50.5 56 0.0019 31.2 8.6 95 424-520 80-184 (303)
303 1q3t_A Cytidylate kinase; nucl 50.4 10 0.00035 35.3 3.3 28 66-97 13-40 (236)
304 1xp8_A RECA protein, recombina 50.2 14 0.00048 37.9 4.6 45 67-116 72-116 (366)
305 2eyu_A Twitching motility prot 50.0 9.8 0.00034 36.9 3.3 34 59-97 16-49 (261)
306 1qwg_A PSL synthase;, (2R)-pho 49.8 58 0.002 32.6 8.8 95 439-544 57-169 (251)
307 1vht_A Dephospho-COA kinase; s 49.4 9 0.00031 34.8 2.7 23 69-95 4-26 (218)
308 2qag_A Septin-2, protein NEDD5 49.3 13 0.00045 37.6 4.2 59 449-507 173-235 (361)
309 1g7s_A Translation initiation 49.3 1.1E+02 0.0037 33.5 11.6 67 442-508 114-217 (594)
310 3b9q_A Chloroplast SRP recepto 49.0 15 0.0005 36.6 4.4 35 67-106 98-132 (302)
311 2ekc_A AQ_1548, tryptophan syn 48.9 20 0.00067 34.9 5.2 113 409-533 43-168 (262)
312 3e70_C DPA, signal recognition 48.8 16 0.00053 37.0 4.6 38 66-108 126-163 (328)
313 2ewv_A Twitching motility prot 48.6 16 0.00054 37.3 4.7 41 67-112 134-174 (372)
314 1g8f_A Sulfate adenylyltransfe 48.2 11 0.00037 40.9 3.5 27 68-98 394-420 (511)
315 2zvr_A Uncharacterized protein 48.0 88 0.003 29.4 9.5 106 425-533 101-222 (290)
316 4a0g_A Adenosylmethionine-8-am 48.0 7.4 0.00025 44.2 2.3 28 70-101 35-62 (831)
317 1d2e_A Elongation factor TU (E 48.0 43 0.0015 34.0 7.7 70 439-508 107-194 (397)
318 3hr8_A Protein RECA; alpha and 48.0 15 0.00052 37.7 4.5 78 31-115 15-102 (356)
319 1ub3_A Aldolase protein; schif 47.8 21 0.00071 34.5 5.1 80 394-498 86-165 (220)
320 1d2n_A N-ethylmaleimide-sensit 47.8 9.9 0.00034 35.9 2.8 27 67-97 62-88 (272)
321 1m8p_A Sulfate adenylyltransfe 47.7 14 0.0005 40.1 4.4 34 67-105 394-428 (573)
322 2jeo_A Uridine-cytidine kinase 47.2 12 0.0004 35.1 3.2 27 67-97 23-49 (245)
323 1njg_A DNA polymerase III subu 47.0 12 0.0004 32.8 3.0 26 69-98 45-70 (250)
324 1ydn_A Hydroxymethylglutaryl-C 46.7 1.4E+02 0.0049 29.0 11.0 103 435-543 118-231 (295)
325 2zts_A Putative uncharacterize 46.4 17 0.00059 32.9 4.1 35 67-106 28-63 (251)
326 1bqc_A Protein (beta-mannanase 46.3 33 0.0011 33.0 6.3 52 441-493 36-91 (302)
327 2w58_A DNAI, primosome compone 46.3 12 0.00043 33.3 3.1 30 70-104 55-84 (202)
328 1kk1_A EIF2gamma; initiation o 46.3 39 0.0013 34.3 7.2 67 439-508 125-199 (410)
329 1zuh_A Shikimate kinase; alpha 45.7 8.1 0.00028 33.6 1.7 24 71-98 9-32 (168)
330 3end_A Light-independent proto 45.3 2.1E+02 0.0072 27.3 15.0 83 438-540 199-289 (307)
331 1yx1_A Hypothetical protein PA 45.3 44 0.0015 31.1 6.9 93 437-533 84-183 (264)
332 1wky_A Endo-beta-1,4-mannanase 45.2 54 0.0018 34.4 8.2 57 439-496 41-101 (464)
333 1s96_A Guanylate kinase, GMP k 45.1 15 0.0005 34.7 3.6 27 67-97 14-40 (219)
334 2dyk_A GTP-binding protein; GT 45.0 13 0.00046 30.9 2.9 57 446-507 104-160 (161)
335 3nwj_A ATSK2; P loop, shikimat 44.9 11 0.00038 36.5 2.8 26 69-98 48-73 (250)
336 1nlf_A Regulatory protein REPA 44.9 20 0.00068 34.1 4.5 27 67-97 28-54 (279)
337 2wjy_A Regulator of nonsense t 44.9 17 0.00058 41.1 4.6 33 69-105 371-403 (800)
338 3ngj_A Deoxyribose-phosphate a 44.8 28 0.00095 34.4 5.5 79 394-498 110-189 (239)
339 1dos_A Aldolase class II; lyas 44.6 1.2E+02 0.0041 31.6 10.5 101 396-508 56-165 (358)
340 2bdt_A BH3686; alpha-beta prot 44.5 9.8 0.00034 33.7 2.1 24 69-96 2-25 (189)
341 1gwn_A RHO-related GTP-binding 44.4 43 0.0015 30.2 6.5 56 450-507 132-202 (205)
342 3kta_A Chromosome segregation 44.4 14 0.00049 32.3 3.1 24 69-97 27-50 (182)
343 3tlx_A Adenylate kinase 2; str 44.4 13 0.00046 35.0 3.2 27 67-97 27-53 (243)
344 1ksh_A ARF-like protein 2; sma 44.2 43 0.0015 28.8 6.1 58 449-509 118-180 (186)
345 3nrs_A Dihydrofolate:folylpoly 44.0 14 0.00049 38.2 3.6 33 67-106 50-82 (437)
346 3p6l_A Sugar phosphate isomera 43.9 23 0.0008 32.8 4.7 74 438-520 92-165 (262)
347 4b3f_X DNA-binding protein smu 43.8 12 0.00041 40.6 3.0 33 71-108 207-239 (646)
348 2cvh_A DNA repair and recombin 43.7 13 0.00046 33.1 2.9 25 67-95 18-42 (220)
349 3tqc_A Pantothenate kinase; bi 43.6 20 0.00067 36.4 4.4 43 73-140 93-135 (321)
350 1w78_A FOLC bifunctional prote 43.5 17 0.00058 37.2 4.0 32 68-106 48-79 (422)
351 3crm_A TRNA delta(2)-isopenten 43.5 9.7 0.00033 38.9 2.1 26 69-98 5-30 (323)
352 1s0u_A EIF-2-gamma, translatio 43.3 33 0.0011 35.0 6.1 67 440-509 124-198 (408)
353 1n0w_A DNA repair protein RAD5 42.8 12 0.0004 34.0 2.4 26 67-96 22-47 (243)
354 4ad1_A Glycosyl hydrolase fami 42.7 48 0.0016 34.4 7.2 66 438-507 105-174 (380)
355 3oix_A Putative dihydroorotate 42.6 2E+02 0.0069 29.4 11.8 101 435-541 111-222 (345)
356 2lkc_A Translation initiation 42.2 78 0.0027 26.6 7.4 65 442-509 99-171 (178)
357 3lk7_A UDP-N-acetylmuramoylala 42.2 18 0.00062 37.5 4.0 31 69-106 112-142 (451)
358 2zr9_A Protein RECA, recombina 42.1 18 0.00061 36.7 3.8 35 67-106 59-93 (349)
359 3tr5_A RF-3, peptide chain rel 42.1 26 0.00088 37.7 5.2 41 441-481 125-165 (528)
360 2og2_A Putative signal recogni 42.0 21 0.00072 36.7 4.4 35 67-106 155-189 (359)
361 1yrb_A ATP(GTP)binding protein 41.9 45 0.0015 30.7 6.3 60 446-508 167-256 (262)
362 4gp7_A Metallophosphoesterase; 41.9 9.2 0.00031 34.0 1.5 22 67-92 7-28 (171)
363 3j2k_7 ERF3, eukaryotic polype 41.8 35 0.0012 35.4 6.1 61 438-500 142-216 (439)
364 2g3y_A GTP-binding protein GEM 41.8 50 0.0017 30.5 6.6 57 449-508 144-202 (211)
365 3ea0_A ATPase, para family; al 41.5 58 0.002 29.6 6.9 122 363-536 119-244 (245)
366 1jbk_A CLPB protein; beta barr 41.5 10 0.00035 32.1 1.7 28 67-98 41-68 (195)
367 3ake_A Cytidylate kinase; CMP 41.4 10 0.00035 33.6 1.8 23 71-97 4-26 (208)
368 3ez9_A Para; DNA binding, wing 41.3 59 0.002 32.8 7.5 39 67-108 109-152 (403)
369 2xzl_A ATP-dependent helicase 41.2 21 0.0007 40.5 4.5 35 69-107 375-409 (802)
370 2wkq_A NPH1-1, RAS-related C3 41.2 52 0.0018 31.1 6.7 64 443-508 250-329 (332)
371 2ged_A SR-beta, signal recogni 40.9 45 0.0016 28.8 5.8 26 449-474 155-180 (193)
372 2zds_A Putative DNA-binding pr 40.7 1E+02 0.0034 29.5 8.7 100 431-533 105-230 (340)
373 4dcu_A GTP-binding protein ENG 40.6 46 0.0016 34.4 6.8 66 441-509 297-369 (456)
374 1p9r_A General secretion pathw 40.6 22 0.00074 37.2 4.3 40 67-112 165-204 (418)
375 2qu8_A Putative nucleolar GTP- 40.5 56 0.0019 29.7 6.6 63 443-508 133-204 (228)
376 2ehv_A Hypothetical protein PH 40.5 28 0.00096 31.5 4.6 25 67-95 28-52 (251)
377 2orv_A Thymidine kinase; TP4A 40.2 24 0.00084 34.7 4.4 46 67-119 17-62 (234)
378 2gks_A Bifunctional SAT/APS ki 40.2 22 0.00074 38.5 4.3 33 68-105 371-403 (546)
379 2p65_A Hypothetical protein PF 40.0 9.1 0.00031 32.6 1.2 28 67-98 41-68 (187)
380 1uf9_A TT1252 protein; P-loop, 40.0 17 0.00059 32.0 3.0 22 69-94 8-29 (203)
381 3jug_A Beta-mannanase; TIM-bar 39.9 76 0.0026 32.2 8.1 55 440-495 57-115 (345)
382 2q3h_A RAS homolog gene family 39.8 75 0.0026 27.7 7.1 57 450-508 124-194 (201)
383 2wsm_A Hydrogenase expression/ 39.8 26 0.00087 31.4 4.1 59 449-508 153-213 (221)
384 3eag_A UDP-N-acetylmuramate:L- 39.6 17 0.00057 36.1 3.1 31 69-106 108-138 (326)
385 3uk6_A RUVB-like 2; hexameric 39.6 21 0.00072 34.7 3.8 28 67-98 68-95 (368)
386 2pt5_A Shikimate kinase, SK; a 39.5 12 0.00039 32.3 1.7 23 71-97 2-24 (168)
387 4hf7_A Putative acylhydrolase; 39.3 2.1E+02 0.0071 25.5 10.8 46 436-481 104-162 (209)
388 3tqf_A HPR(Ser) kinase; transf 39.1 17 0.00057 34.8 2.9 25 68-96 15-39 (181)
389 3e2i_A Thymidine kinase; Zn-bi 39.1 26 0.00087 34.3 4.2 47 67-120 26-72 (219)
390 1z6g_A Guanylate kinase; struc 39.0 15 0.0005 34.2 2.5 24 67-94 21-44 (218)
391 3aam_A Endonuclease IV, endoiv 38.6 71 0.0024 29.7 7.1 85 428-519 79-169 (270)
392 2qgz_A Helicase loader, putati 38.4 18 0.00061 35.7 3.1 33 69-105 152-184 (308)
393 1odf_A YGR205W, hypothetical 3 38.3 20 0.00069 35.4 3.5 28 67-98 29-56 (290)
394 2qby_A CDC6 homolog 1, cell di 37.9 38 0.0013 32.5 5.2 28 67-98 43-70 (386)
395 1vi1_A Fatty acid/phospholipid 37.8 7.9 0.00027 39.6 0.5 26 335-360 280-312 (345)
396 1f6b_A SAR1; gtpases, N-termin 37.8 42 0.0014 29.9 5.2 57 449-505 125-195 (198)
397 1r8s_A ADP-ribosylation factor 37.6 52 0.0018 27.3 5.5 57 449-508 100-161 (164)
398 3aez_A Pantothenate kinase; tr 37.6 32 0.0011 34.3 4.8 28 66-97 87-114 (312)
399 1moz_A ARL1, ADP-ribosylation 37.5 48 0.0016 28.2 5.3 71 438-508 103-179 (183)
400 1cr0_A DNA primase/helicase; R 37.5 43 0.0015 31.9 5.6 27 67-97 33-59 (296)
401 1u83_A Phosphosulfolactate syn 37.4 67 0.0023 32.6 7.1 95 438-544 81-193 (276)
402 2f6r_A COA synthase, bifunctio 37.3 20 0.00069 34.7 3.2 22 69-94 75-96 (281)
403 1f76_A Dihydroorotate dehydrog 37.0 1.5E+02 0.0052 29.2 9.6 91 450-547 211-322 (336)
404 1uj2_A Uridine-cytidine kinase 36.9 12 0.0004 35.3 1.4 25 70-98 23-47 (252)
405 3cwq_A Para family chromosome 36.9 94 0.0032 28.4 7.5 82 362-481 67-151 (209)
406 1p9l_A Dihydrodipicolinate red 36.9 46 0.0016 32.4 5.7 64 439-506 58-122 (245)
407 1ujp_A Tryptophan synthase alp 36.8 21 0.00071 35.3 3.3 98 424-533 62-165 (271)
408 1vcv_A Probable deoxyribose-ph 36.7 41 0.0014 32.7 5.3 90 393-507 80-181 (226)
409 3syl_A Protein CBBX; photosynt 36.4 26 0.0009 33.1 3.8 32 67-103 65-96 (309)
410 2v1u_A Cell division control p 36.4 25 0.00087 33.8 3.8 28 67-98 42-69 (387)
411 3ndo_A Deoxyribose-phosphate a 36.2 60 0.0021 31.8 6.4 81 394-498 95-179 (231)
412 3nav_A Tryptophan synthase alp 36.1 41 0.0014 33.4 5.3 113 409-533 46-171 (271)
413 2r2a_A Uncharacterized protein 35.9 25 0.00084 32.9 3.5 23 71-97 7-29 (199)
414 1mio_B Nitrogenase molybdenum 35.9 1E+02 0.0035 32.2 8.5 163 309-500 26-230 (458)
415 1sq5_A Pantothenate kinase; P- 35.5 25 0.00084 34.5 3.5 46 67-140 78-123 (308)
416 3bh0_A DNAB-like replicative h 35.4 35 0.0012 33.6 4.7 64 27-97 26-92 (315)
417 3izy_P Translation initiation 35.4 29 0.00099 37.7 4.4 68 440-508 94-167 (537)
418 3lxw_A GTPase IMAP family memb 35.3 62 0.0021 30.5 6.2 60 449-509 138-208 (247)
419 2cjw_A GTP-binding protein GEM 35.3 83 0.0028 27.8 6.7 57 449-508 113-171 (192)
420 3u7q_B Nitrogenase molybdenum- 34.8 2.7E+02 0.0091 30.0 11.7 162 299-484 60-252 (523)
421 4dkx_A RAS-related protein RAB 34.7 72 0.0025 29.7 6.5 69 437-508 102-175 (216)
422 1jbw_A Folylpolyglutamate synt 34.7 30 0.001 35.4 4.2 40 68-115 38-77 (428)
423 1k77_A EC1530, hypothetical pr 34.4 1.1E+02 0.0039 27.9 7.7 86 432-520 80-179 (260)
424 3apt_A Methylenetetrahydrofola 34.4 30 0.001 34.8 4.1 103 364-480 175-289 (310)
425 1upt_A ARL1, ADP-ribosylation 34.1 97 0.0033 25.8 6.7 57 449-508 107-168 (171)
426 1o5z_A Folylpolyglutamate synt 34.0 28 0.00096 36.1 3.9 40 68-115 51-90 (442)
427 2qby_B CDC6 homolog 3, cell di 34.0 28 0.00097 33.8 3.7 48 47-98 22-70 (384)
428 1pui_A ENGB, probable GTP-bind 33.9 1.5E+02 0.005 26.0 8.1 63 446-509 133-199 (210)
429 1wf3_A GTP-binding protein; GT 33.9 1.5E+02 0.005 29.1 8.9 61 444-508 109-172 (301)
430 4a74_A DNA repair and recombin 33.9 19 0.00064 32.3 2.2 25 67-95 23-47 (231)
431 3dpu_A RAB family protein; roc 33.9 39 0.0013 35.6 5.0 69 438-509 136-208 (535)
432 1cke_A CK, MSSA, protein (cyti 33.8 16 0.00054 33.0 1.7 25 69-97 5-29 (227)
433 3llu_A RAS-related GTP-binding 33.7 81 0.0028 27.7 6.4 65 437-505 114-193 (196)
434 3zvl_A Bifunctional polynucleo 33.5 17 0.00057 37.5 2.0 27 67-97 256-282 (416)
435 1udx_A The GTP-binding protein 33.5 1.8E+02 0.0061 30.4 9.8 76 429-509 250-325 (416)
436 2a5y_B CED-4; apoptosis; HET: 33.0 28 0.00097 36.7 3.8 68 39-112 123-195 (549)
437 1ltq_A Polynucleotide kinase; 32.8 21 0.00071 34.0 2.5 23 70-96 3-25 (301)
438 3pih_A Uvrabc system protein A 32.7 16 0.00055 42.3 2.0 28 67-98 22-49 (916)
439 3q3j_B RHO-related GTP-binding 32.7 47 0.0016 30.0 4.7 67 441-509 120-203 (214)
440 1mzh_A Deoxyribose-phosphate a 32.5 1.6E+02 0.0054 27.9 8.6 62 442-507 107-172 (225)
441 4dzz_A Plasmid partitioning pr 32.4 42 0.0014 29.5 4.3 123 361-533 74-199 (206)
442 3fb4_A Adenylate kinase; psych 32.4 16 0.00056 32.8 1.6 22 72-97 3-24 (216)
443 2xdq_A Light-independent proto 32.1 24 0.00082 36.7 3.0 112 296-456 14-134 (460)
444 1wi9_A Protein C20ORF116 homol 32.0 21 0.00072 29.6 2.0 26 21-46 14-39 (72)
445 3ngf_A AP endonuclease, family 31.9 1.6E+02 0.0053 27.4 8.3 85 432-520 88-186 (269)
446 1jjv_A Dephospho-COA kinase; P 31.8 13 0.00043 33.4 0.7 21 71-95 4-24 (206)
447 3ghf_A Septum site-determining 31.5 47 0.0016 29.2 4.3 56 426-486 24-81 (120)
448 2x77_A ADP-ribosylation factor 31.5 88 0.003 26.9 6.1 58 449-509 122-184 (189)
449 1svm_A Large T antigen; AAA+ f 31.4 29 0.00098 35.9 3.4 28 66-97 166-193 (377)
450 2r6a_A DNAB helicase, replicat 31.3 43 0.0015 34.6 4.7 37 58-98 191-228 (454)
451 2grj_A Dephospho-COA kinase; T 31.1 25 0.00086 32.5 2.6 25 69-97 12-36 (192)
452 3r20_A Cytidylate kinase; stru 31.0 18 0.00062 35.0 1.7 24 70-97 10-33 (233)
453 3l23_A Sugar phosphate isomera 31.0 1.6E+02 0.0055 28.3 8.5 56 433-489 104-168 (303)
454 1nij_A Hypothetical protein YJ 31.0 39 0.0013 33.3 4.2 37 71-116 6-42 (318)
455 3czq_A Putative polyphosphate 30.9 17 0.00057 37.1 1.5 41 67-113 84-124 (304)
456 2ki0_A DS119; beta-alpha-beta, 30.8 45 0.0015 23.9 3.2 27 460-490 9-35 (36)
457 2bbw_A Adenylate kinase 4, AK4 30.7 18 0.00061 33.7 1.6 27 68-98 26-52 (246)
458 2chg_A Replication factor C sm 30.5 20 0.00068 31.1 1.8 24 71-98 40-63 (226)
459 3r12_A Deoxyribose-phosphate a 30.4 1.1E+02 0.0039 30.5 7.4 79 394-498 126-205 (260)
460 2yhs_A FTSY, cell division pro 30.4 40 0.0014 36.6 4.4 36 67-107 291-326 (503)
461 2q6t_A DNAB replication FORK h 30.2 49 0.0017 34.1 4.9 36 59-98 189-225 (444)
462 2x5o_A UDP-N-acetylmuramoylala 30.0 40 0.0014 34.7 4.2 31 69-106 104-134 (439)
463 1w8s_A FBP aldolase, fructose- 29.9 1.6E+02 0.0054 28.7 8.2 93 443-545 131-233 (263)
464 2gza_A Type IV secretion syste 29.8 20 0.0007 36.2 1.9 27 67-97 173-199 (361)
465 2if2_A Dephospho-COA kinase; a 29.7 17 0.00059 32.4 1.3 21 71-95 3-23 (204)
466 1muw_A Xylose isomerase; atomi 29.5 1.3E+02 0.0044 30.2 7.8 107 424-532 103-235 (386)
467 1f60_A Elongation factor EEF1A 29.5 58 0.002 33.9 5.4 43 438-480 132-181 (458)
468 2vp4_A Deoxynucleoside kinase; 29.2 28 0.00095 32.3 2.6 36 67-112 18-53 (230)
469 3pdi_B Nitrogenase MOFE cofact 29.1 2E+02 0.0068 30.3 9.4 88 297-403 7-103 (458)
470 2f1r_A Molybdopterin-guanine d 29.1 22 0.00077 32.4 1.9 29 71-104 4-32 (171)
471 2vf7_A UVRA2, excinuclease ABC 29.0 18 0.00063 41.4 1.6 23 67-93 34-56 (842)
472 3dl0_A Adenylate kinase; phosp 28.8 18 0.00061 32.7 1.2 22 72-97 3-24 (216)
473 3hn7_A UDP-N-acetylmuramate-L- 28.8 33 0.0011 36.5 3.4 32 68-106 121-152 (524)
474 2ygr_A Uvrabc system protein A 28.7 19 0.00065 42.2 1.6 25 67-95 44-68 (993)
475 3fdi_A Uncharacterized protein 28.7 19 0.00066 33.3 1.4 24 71-98 8-31 (201)
476 1g3q_A MIND ATPase, cell divis 28.5 70 0.0024 28.9 5.2 81 440-535 152-234 (237)
477 2axn_A 6-phosphofructo-2-kinas 28.3 45 0.0015 35.7 4.3 32 69-105 35-66 (520)
478 1toa_A Tromp-1, protein (perip 28.2 3.9E+02 0.013 26.6 10.9 79 422-506 165-267 (313)
479 1tv8_A MOAA, molybdenum cofact 28.1 92 0.0032 30.5 6.3 47 438-485 147-193 (340)
480 1qgu_B Protein (nitrogenase mo 28.0 2.3E+02 0.0078 30.3 9.8 176 298-500 57-278 (519)
481 2h17_A ADP-ribosylation factor 28.0 74 0.0025 27.4 5.0 55 448-505 120-179 (181)
482 1ufm_A COP9 complex subunit 4; 27.9 39 0.0013 28.0 3.0 35 22-56 24-65 (84)
483 3fvq_A Fe(3+) IONS import ATP- 27.8 39 0.0013 34.9 3.6 21 67-91 28-48 (359)
484 1jwy_B Dynamin A GTPase domain 27.7 51 0.0017 31.4 4.2 67 443-509 191-262 (315)
485 1q57_A DNA primase/helicase; d 27.7 39 0.0013 35.2 3.7 29 66-98 239-267 (503)
486 1e4v_A Adenylate kinase; trans 27.5 22 0.00077 32.2 1.6 22 72-97 3-24 (214)
487 1knx_A Probable HPR(Ser) kinas 27.2 28 0.00094 35.5 2.4 24 68-95 146-169 (312)
488 3bgw_A DNAB-like replicative h 27.2 55 0.0019 34.2 4.7 43 58-105 185-228 (444)
489 1twd_A Copper homeostasis prot 27.1 2.8E+02 0.0096 27.7 9.5 92 449-543 50-148 (256)
490 1nrj_B SR-beta, signal recogni 27.1 97 0.0033 27.4 5.7 32 432-463 102-133 (218)
491 2wsm_A Hydrogenase expression/ 27.1 34 0.0012 30.6 2.8 25 70-98 31-55 (221)
492 3bbn_M Ribosomal protein S13; 27.0 16 0.00055 33.9 0.6 25 198-222 79-103 (145)
493 2r6f_A Excinuclease ABC subuni 27.0 21 0.00074 41.7 1.7 24 67-94 42-65 (972)
494 3oa3_A Aldolase; structural ge 27.0 2.1E+02 0.0071 29.0 8.7 42 464-505 186-229 (288)
495 4a1f_A DNAB helicase, replicat 26.9 58 0.002 33.2 4.7 42 58-104 34-76 (338)
496 1e8c_A UDP-N-acetylmuramoylala 26.9 39 0.0013 35.5 3.5 32 68-106 107-138 (498)
497 1fnn_A CDC6P, cell division co 26.7 35 0.0012 33.1 2.9 24 71-98 46-69 (389)
498 3k1j_A LON protease, ATP-depen 26.6 30 0.001 37.3 2.6 27 68-98 59-85 (604)
499 1znw_A Guanylate kinase, GMP k 26.6 36 0.0012 30.9 2.8 25 67-95 18-42 (207)
500 2z43_A DNA repair and recombin 26.4 42 0.0014 33.1 3.5 27 67-97 105-131 (324)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=5e-229 Score=1788.05 Aligned_cols=465 Identities=45% Similarity=0.732 Sum_probs=458.0
Q ss_pred CCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 28 ~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
|+||++||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~ 80 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV 80 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence 78999999999999999999999999999999999998999999999999999999999999999999995 99999999
Q ss_pred EecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 008480 108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE 187 (564)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~rl~~~~~~~~ 187 (564)
|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn------------------- 141 (543)
T 3do6_A 81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN------------------- 141 (543)
T ss_dssp EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeeh
Q 008480 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA 267 (564)
Q Consensus 188 r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdItvA 267 (564)
+|+|||++|+||||||||||+||+|+||||++.||+|||||||||||
T Consensus 142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA 188 (543)
T 3do6_A 142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA 188 (543)
T ss_dssp ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence 79999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEeccccchhcccC
Q 008480 268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN 347 (564)
Q Consensus 268 SEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~ 347 (564)
||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus 189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc 268 (543)
T 3do6_A 189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT 268 (543)
T ss_dssp SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccc
Q 008480 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (564)
Q Consensus 348 nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~e 427 (564)
|||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++ ++|.+|
T Consensus 269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e 337 (543)
T 3do6_A 269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE 337 (543)
T ss_dssp CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence 9999999999999 99999999999999999999999999999999999999999999999986 688899
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
|+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|+++||++|+++|
T Consensus 338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred hcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 508 ENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 508 e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
+ +++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+ |+.
T Consensus 417 e--~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~-G~~ 467 (543)
T 3do6_A 417 K--DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKH-GFD 467 (543)
T ss_dssp C--CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHT-TCT
T ss_pred c--CCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHHHHhc-CCC
Confidence 7 47899999999999999999999 99999999999999999999997 554
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=1.1e-217 Score=1710.02 Aligned_cols=479 Identities=52% Similarity=0.866 Sum_probs=467.5
Q ss_pred CCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHH
Q 008480 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGL 93 (564)
Q Consensus 14 ~~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL 93 (564)
.||+|||||||+++|+||++||+++||++|||||||+|||||++++++|+++++++|+|+||+++|||+||||||||++|
T Consensus 2 ~~~~sDieIa~~~~~~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinL 81 (557)
T 3pzx_A 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGL 81 (557)
T ss_dssp ----CCTTTTTTCCCCCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHH
Confidence 47999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChh
Q 008480 94 CQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 173 (564)
Q Consensus 94 ~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~ 173 (564)
+++| +++|++++++||+|||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 82 A~al-A~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLlaA~iDn~i~~gn----- 155 (557)
T 3pzx_A 82 TDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----- 155 (557)
T ss_dssp HHHH-HHTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHH-HHcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHHHHHHHHHHhhcC-----
Confidence 9999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCC
Q 008480 174 ALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEE 253 (564)
Q Consensus 174 ~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~ 253 (564)
+|+|||++|+|+||||||||+||+|+||+|++.
T Consensus 156 -----------------------------------------------~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~ 188 (557)
T 3pzx_A 156 -----------------------------------------------VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKA 188 (557)
T ss_dssp -----------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSGG
T ss_pred -----------------------------------------------CCCccCCeeEEeeeecCChHHhhhhhhccCCCC
Confidence 799999999999999999999999999999999
Q ss_pred CCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCcee
Q 008480 254 KGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPV 333 (564)
Q Consensus 254 ~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa 333 (564)
||+|||||||||||||||||||||+|++|||+||||||||||++|+||||+||+++||||+|||||||||||||||||||
T Consensus 189 ~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa 268 (557)
T 3pzx_A 189 NGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPA 268 (557)
T ss_dssp GCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEE
T ss_pred CCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCC
Q 008480 334 LVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQ 413 (564)
Q Consensus 334 ~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~ 413 (564)
|||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++
T Consensus 269 ~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~ 345 (557)
T 3pzx_A 269 FIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK 345 (557)
T ss_dssp EECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG
T ss_pred EEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 008480 414 VVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (564)
Q Consensus 414 ~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGG 493 (564)
++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|+++|++ +++| |++||
T Consensus 346 --------~~l~~en~~al~~G~~NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~~--wa~GG 414 (557)
T 3pzx_A 346 --------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE-VALS--WAKGG 414 (557)
T ss_dssp --------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEE-EECH--HHHGG
T ss_pred --------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEE--ecccc
Confidence 788899999999999999999999999999999999999999999999999999999995 8999 99999
Q ss_pred cchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 494 KGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 494 eGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
+|+++||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+ |+.
T Consensus 415 ~G~~~LA~~Vv~~~~~~~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~-G~~ 481 (557)
T 3pzx_A 415 EGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESL-GYG 481 (557)
T ss_dssp GGGHHHHHHHHHHHHHCCCCCCCSSCTTSCHHHHHHHHHHHTTCCSCEEECHHHHHHHHHHHHT-TCT
T ss_pred hhHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHHhCCCeEEECHHHHHHHHHHHHc-CCC
Confidence 9999999999999987567899999999999999999999 99999999999999999999987 654
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.96 E-value=4e-30 Score=210.77 Aligned_cols=70 Identities=56% Similarity=0.883 Sum_probs=67.9
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeee
Q 008480 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWR 232 (564)
Q Consensus 162 n~i~~~n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~ 232 (564)
.+||||++|+|++||+|||| .++|+|+||++|++||+||||+|+||++||+||+++|.+|||||++|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 37999999999999999999 67899999999999999999999999999999999999999999999996
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.04 E-value=0.00031 Score=69.74 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=44.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
...|.|.||+..| ||||||+++.|+.+| ++.|+++.+. +|+|++.-.||+..
T Consensus 102 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 102 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CSCCEEEEEESSS---SSCHHHHHHHHHHHH-HHTTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCChHHHHHHHHHHH-HhCCCcEEEEECCCCCccHHHHcCCCC
Confidence 4578999998554 999999999999999 5889998765 79999988898764
No 5
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.94 E-value=0.00044 Score=67.69 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=44.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||+..
T Consensus 80 ~~~kvI~vts~kg---G~GKTt~a~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 80 SAVQSIVITSEAP---GAGKSTIAANLAVAY-AQAGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp CCCCEEEEECSST---TSSHHHHHHHHHHHH-HHTTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCccHHHHcCCCC
Confidence 4578999987544 999999999999999 5899998875 89999988898764
No 6
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.57 E-value=0.001 Score=65.89 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
.+.|.|+||+-.| ||||||++..|+.+| +..|+++.+. +|.|++.-.||++.
T Consensus 90 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 90 AQNNVLMMTGVSP---SIGMTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp TTCCEEEEEESSS---SSSHHHHHHHHHHHH-HTTTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCCEEEEeccCCCCCHHHHhCCCC
Confidence 4578999998655 999999999999999 5889998765 78899988898753
No 7
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.64 E-value=0.0072 Score=60.26 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCC-cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec--CCCCCCccccccC
Q 008480 67 ADG-YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (564)
Q Consensus 67 ~~g-klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR--ePSlGP~FGiKGG 123 (564)
.+| |.|+||+- .-|+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+.+
T Consensus 10 ~~gm~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 10 NKGKTTFVFIGG---KGGVGKTTISAATALWM-ARSGKKTLVISTDPAHSLSDSLEREIG 65 (324)
T ss_dssp BTTBCEEEEEEE---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCSSCCHHHHHTSCCC
T ss_pred CCCCeEEEEEeC---CCCchHHHHHHHHHHHH-HHCCCcEEEEeCCCCcCHHHHhCCcCC
Confidence 458 77777765 56999999999999999 478999876532 5677778998753
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.50 E-value=0.0068 Score=57.09 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=38.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+|.|.|++ +.-|+||||++..|+.+|. +.|+++.+. .++|++.-.||++.
T Consensus 2 ~~~I~v~s---~kgGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~l~~~~ 54 (263)
T 1hyq_A 2 VRTITVAS---GKGGTGKTTITANLGVALA-QLGHDVTIVDADITMANLELILGMEG 54 (263)
T ss_dssp CEEEEEEE---SSSCSCHHHHHHHHHHHHH-HTTCCEEEEECCCSSSSHHHHTTCCC
T ss_pred CeEEEEEC---CCCCCCHHHHHHHHHHHHH-hCCCcEEEEECCCCCCCcchhcCCCC
Confidence 46677765 5679999999999999994 789987664 46677777777654
No 9
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.38 E-value=0.0076 Score=55.61 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=37.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+|.|.|++ +.-|+||||++..|+.+|. +.|+++.+. .++|++.-.||+..
T Consensus 2 ~~~i~v~s---~kgGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~~ 54 (237)
T 1g3q_A 2 GRIISIVS---GKGGTGKTTVTANLSVALG-DRGRKVLAVDGDLTMANLSLVLGVDD 54 (237)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCTTSCCHHHHTTCCC
T ss_pred ceEEEEec---CCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCCCCCCChhHhcCCCC
Confidence 46676665 5679999999999999994 789987654 25566666676643
No 10
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.25 E-value=0.0079 Score=56.15 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCcccccc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (564)
+|.|.|++ +.-|+||||++..|+.+|. +.|+++.+. .++|++.-.||+..
T Consensus 2 ~~vi~v~s---~kgGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~~~~~lg~~~ 54 (260)
T 3q9l_A 2 ARIIVVTS---GKGGVGKTTSSAAIATGLA-QKGKKTVVIDFAIGLRNLDLIMGCER 54 (260)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSSCCHHHHTTCGG
T ss_pred CeEEEEEC---CCCCCcHHHHHHHHHHHHH-hCCCcEEEEECCCCCCChhHHhCCCC
Confidence 46676665 5679999999999999994 889997763 45667666676653
No 11
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.02 E-value=0.02 Score=52.95 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=31.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l-gk~~~~~ 108 (564)
.+|.|.|++- .-|+||||++..|+.+| ++. |+++.+.
T Consensus 3 ~~~vI~v~s~---kGGvGKTt~a~~LA~~l-a~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSA---KGGDGGSCIAANFAFAL-SQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEES---STTSSHHHHHHHHHHHH-TTSTTCCEEEE
T ss_pred CCeEEEEECC---CCCcchHHHHHHHHHHH-HhCcCCCEEEE
Confidence 5788888864 56999999999999999 577 9998765
No 12
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.70 E-value=0.024 Score=55.09 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=32.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.+|.|.|+ . .-|+||||+|+.|+.+| ++.|+++.+.=-.|
T Consensus 39 ~~~~vI~v~---~-KGGvGKTT~a~nLA~~L-a~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVY---G-KGGIGKSTTSSNLSAAF-SILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEE---C-STTSSHHHHHHHHHHHH-HHTTCCEEEEEESS
T ss_pred CCceEEEEE---C-CCCccHHHHHHHHHHHH-HHCCCeEEEEeCCC
Confidence 568899887 2 78999999999999999 58899987663333
No 13
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.53 E-value=0.018 Score=52.73 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=28.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
|.|.|| .|.-|+||||++.+|+.+| ++.|+++.+
T Consensus 2 k~I~v~---s~kgGvGKTt~a~nLa~~l-a~~G~rVll 35 (224)
T 1byi_A 2 KRYFVT---GTDTEVGKTVASCALLQAA-KAAGYRTAG 35 (224)
T ss_dssp EEEEEE---ESSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHHHH-HHCCCCEEE
Confidence 355555 4677999999999999999 588999775
No 14
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.51 E-value=0.016 Score=58.10 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccccC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKGG 123 (564)
++|.|+||+ +.-|+||||+|..|+.+| ++.|+++.+. .| ||+.-.||++.+
T Consensus 17 ~~~~i~v~s---gkGGvGKTTva~~LA~~l-A~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 17 TSLKWIFVG---GKGGVGKTTTSCSLAIQM-SKVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp TTCCEEEEE---CSSSSSHHHHHHHHHHHH-HTSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 356666664 478999999999999999 5889998764 35 888888998753
No 15
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.24 E-value=0.034 Score=52.71 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+.+|.|.|++ +.-|+||||+|..|+.+| + .|+++.+.
T Consensus 25 ~~~~vI~v~s---~kGGvGKTT~a~~LA~~l-a-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIAS---IKGGVGKSTSAIILATLL-S-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECC---SSSSSCHHHHHHHHHHHH-T-TTSCEEEE
T ss_pred CCCeEEEEEe---CCCCchHHHHHHHHHHHH-H-CCCCEEEE
Confidence 4588887775 456999999999999999 5 69886543
No 16
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.20 E-value=0.033 Score=53.07 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=35.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|++|.+.|+ -|.||||.+--|.+.|. ..|.+.+...|||+
T Consensus 2 ~g~~i~~eG~----~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGL----EGAGKTTARNVVVETLE-QLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEEC----TTSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCCcceeeeCCC
Confidence 3899999996 49999999999999995 77886668899995
No 17
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.16 E-value=0.044 Score=52.25 Aligned_cols=38 Identities=29% Similarity=0.074 Sum_probs=31.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
..+|.|.|++ +.-|+||||++..|+.+|. +.|+++.+.
T Consensus 16 ~~~~vI~v~s---~kGGvGKTT~a~nLA~~la-~~G~~Vlli 53 (262)
T 2ph1_A 16 KIKSRIAVMS---GKGGVGKSTVTALLAVHYA-RQGKKVGIL 53 (262)
T ss_dssp TCSCEEEEEC---SSSCTTHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCCeEEEEEc---CCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 3478888775 5679999999999999994 789987653
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.96 E-value=0.03 Score=53.10 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+.+|.|.|++ +.-|+||||++..|+.+|. +.|+++.+.
T Consensus 4 ~~~~vI~v~s---~kGGvGKTt~a~~LA~~la-~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALAN---QKGGVGKTTTAINLAAYLA-RLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECC---SSCCHHHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCEEEEEEe---CCCCchHHHHHHHHHHHHH-HCCCCEEEE
Confidence 4578888875 5669999999999999994 779987764
No 19
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.93 E-value=0.027 Score=57.41 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=40.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhh--hcCCceEEE---ecCCCCCCccccccC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTC---LRQPSQGPTFGIKGG 123 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~--~lgk~~~~~---lRePSlGP~FGiKGG 123 (564)
+++.|+||+- .-|+||||+|..|+.+| + +.|+++.+. +| ||+.-.||++.+
T Consensus 16 ~~~~i~v~sg---KGGvGKTTvaanLA~~l-A~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 16 TTHKWIFVGG---KGGVGKTTSSCSIAIQM-ALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp SSCCEEEEEE---STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCcEEEEEeC---CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 3566666653 66999999999999999 6 789998875 54 788888999864
No 20
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.73 E-value=0.051 Score=52.29 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
++|.|.|+..++ .-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 33 ~~~~i~v~~~s~-KGGvGKTT~a~nLA~~l-a~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNYF-KGGVGKSKLSTMFAYLT-DKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECCS-SSSSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcEEEEEeccC-CCCchHHHHHHHHHHHH-HhCCCeEEEE
Confidence 478888876544 56999999999999999 4889997653
No 21
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.70 E-value=0.05 Score=52.85 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=36.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
..|++|.+.|+ -|.||||.+--|.+.|. ..|.+....+|||+
T Consensus 25 ~~~~~i~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 25 MNAKFIVIEGL----EGAGKSTAIQVVVETLQ-QNGIDHITRTREPG 66 (236)
T ss_dssp -CCCEEEEEES----TTSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCeeeeecCCC
Confidence 35999999996 49999999999999995 78988678899996
No 22
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.65 E-value=0.057 Score=48.72 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
..|++|++||. -|.||||++--|++.|+ ..+..+ ..+|+|..|..+|
T Consensus 8 ~~~~~I~l~G~----~GsGKST~~~~L~~~l~-~~~~~~-~~~~~~~~~~~~g 54 (212)
T 2wwf_A 8 KKGKFIVFEGL----DRSGKSTQSKLLVEYLK-NNNVEV-KHLYFPNRETGIG 54 (212)
T ss_dssp BCSCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTTSHHH
T ss_pred hcCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcE-EEEecCCCCCcHH
Confidence 35899999995 69999999999999995 667777 6799997655443
No 23
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.47 E-value=0.042 Score=53.14 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh-cCCceEEEecCCCC
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF-LDKKVVTCLRQPSQ 114 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~-lgk~~~~~lRePSl 114 (564)
...|++|.++|+ -|.||||.+--|.+.|. . .|.+++...|||.-
T Consensus 18 ~~~~~~i~~~G~----~g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGI----DGSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHh-hccCceeeEeeeCCCC
Confidence 356999999997 49999999999999995 6 89988877899973
No 24
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.45 E-value=0.075 Score=47.92 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
.+|++|++||. -|.||||++--|++.|+ ..|..+ ..+|+|.-|
T Consensus 7 ~~~~~I~l~G~----~GsGKsT~~~~L~~~l~-~~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 7 RRGALIVLEGV----DRAGKSTQSRKLVEALC-AAGHRA-ELLRFPERS 49 (215)
T ss_dssp CCCCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTT
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHHHHHH-HcCCcE-EEeeCCCCC
Confidence 35889999995 79999999999999995 667776 678998543
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.39 E-value=0.066 Score=54.16 Aligned_cols=53 Identities=28% Similarity=0.158 Sum_probs=41.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec--CCCCCCccccccC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR--ePSlGP~FGiKGG 123 (564)
..+|.|+|++- .-|+||||+|..|+.+| ++.|+++.++== +||+.-.||++-+
T Consensus 23 ~~~~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 23 KDGTKYIMFGG---KGGVGKTTMSAATGVYL-AEKGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SCSCEEEEEEC---SSSTTHHHHHHHHHHHH-HHSSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred cCCCEEEEEeC---CCCccHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 45777877764 55999999999999999 588999877632 5677778988753
No 26
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.64 E-value=0.026 Score=58.59 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE--EecCCCCCCccccccCCCCCCceee
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT--CLRQPSQGPTFGIKGGAAGGGYSQV 132 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~--~lRePSlGP~FGiKGGAaGGGysQv 132 (564)
+++++++ .-|+||||++..|+.+| +..|+++.+ + |+||+.-.||++-+ ..-.+|
T Consensus 3 ~i~~~~g----kGG~GKTt~a~~la~~l-a~~g~~vllvd~-~~~~l~~~~~~~~~---~~~~~v 58 (374)
T 3igf_A 3 LILTFLG----KSGVARTKIAIAAAKLL-ASQGKRVLLAGL-AEPVLPLLLEQTLT---PDPQQI 58 (374)
T ss_dssp EEEEEEC----SBHHHHHHHHHHHHHHH-HHTTCCEEEEEC-SCSHHHHHHTSCCC---SSCEEE
T ss_pred EEEEEeC----CCCCcHHHHHHHHHHHH-HHCCCCeEEEeC-CCCChHHhhCCCCC---CCcccc
Confidence 3555554 34999999999999999 588998743 5 99999999999843 344455
No 27
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.40 E-value=0.1 Score=49.61 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.|++|.+.|+ -|.||||.+--|.+.|. ..|.++ ...|+|.
T Consensus 5 ~g~~i~~eG~----~gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGP----EGAGKSTNRDYLAERLR-ERGIEV-QLTREPG 44 (213)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-TTTCCE-EEEESSC
T ss_pred CceEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCCc-ccccCCC
Confidence 5899999996 59999999999999995 778876 6789995
No 28
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.27 E-value=0.1 Score=46.71 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|.|+ -+.-|+||||++..|+.+|. +.|+++.+.
T Consensus 3 vi~v~---s~kgG~GKTt~a~~la~~la-~~g~~vlli 36 (206)
T 4dzz_A 3 VISFL---NPKGGSGKTTAVINIATALS-RSGYNIAVV 36 (206)
T ss_dssp EEEEC---CSSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EEEEE---eCCCCccHHHHHHHHHHHHH-HCCCeEEEE
Confidence 45444 46789999999999999995 789887653
No 29
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.25 E-value=0.11 Score=52.71 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe--cCCCCCCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIK 121 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l--RePSlGP~FGiK 121 (564)
+++|.|.|++- .-|+||||+|..|+.+|. +.|+++.+.= ++|++.-.||..
T Consensus 141 ~~~kvIav~s~---KGGvGKTT~a~nLA~~La-~~g~rVlliD~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 141 DKSSVVIFTSP---CGGVGTSTVAAACAIAHA-NMGKKVFYLNIEQCGTTDVFFQAE 193 (373)
T ss_dssp TSCEEEEEECS---STTSSHHHHHHHHHHHHH-HHTCCEEEEECCTTCCHHHHCCCS
T ss_pred CCceEEEEECC---CCCChHHHHHHHHHHHHH-hCCCCEEEEECCCCCCHHHHcCCC
Confidence 46888888753 569999999999999994 7899976532 455555555554
No 30
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.52 E-value=0.081 Score=56.68 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=39.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE---ecCCCCCCccccccC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~---lRePSlGP~FGiKGG 123 (564)
..+++++++ .-|+||||+|..|+.+| ++.|+++.+. . +||++-.||++-+
T Consensus 7 ~~~i~~~sg----kGGvGKTT~a~~lA~~l-A~~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 7 IPPYLFFTG----KGGVGKTSISCATAIRL-AEQGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp CCSEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCEEEEEeC----CCcCHHHHHHHHHHHHH-HHCCCcEEEEECCC-CcCHHHHhCCccc
Confidence 356777764 27999999999999999 5889997762 4 4888888998754
No 31
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.40 E-value=0.085 Score=50.51 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
|-|+||+ |-.|+||||+|.||+++| ++.|+++.. +.|
T Consensus 5 k~i~Itg---t~t~vGKT~vt~~L~~~l-~~~G~~V~~--~KP 41 (228)
T 3of5_A 5 KKFFIIG---TDTEVGKTYISTKLIEVC-EHQNIKSLC--LKP 41 (228)
T ss_dssp EEEEEEE---SSSSSCHHHHHHHHHHHH-HHTTCCEEE--ECS
T ss_pred cEEEEEe---CCCCCCHHHHHHHHHHHH-HHCCCeeEE--ecc
Confidence 4577775 567999999999999999 588998764 555
No 32
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.24 E-value=0.17 Score=51.84 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh--hcCCceEEEe--cCCCCCCccccccC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTCL--RQPSQGPTFGIKGG 123 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~--~lgk~~~~~l--RePSlGP~FGiKGG 123 (564)
+.-|++++++ .-|+||||++..|+.+| + +.|+++.+.= ++||+.-.||++-|
T Consensus 16 ~~~~i~~~~g----kGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 16 DSLKWIFVGG----KGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp TTCSEEEEEC----STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCcEEEEEeC----CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4447888877 45999999999999999 6 7899976532 77888888998754
No 33
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.23 E-value=0.18 Score=50.75 Aligned_cols=49 Identities=33% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGi 120 (564)
.+.|+|-|++ .=|-||||||+-|+-|| ++.|+++.+.==.|....++++
T Consensus 46 ~~aKVIAIaG----KGGVGKTTtavNLA~aL-A~~GkkVllID~Dpq~~s~~~l 94 (314)
T 3fwy_A 46 TGAKVFAVYG----KGGIGKSTTSSNLSAAF-SILGKRVLQIGCDPKHDSTFTL 94 (314)
T ss_dssp -CCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEEEESSSCCTTHHH
T ss_pred CCceEEEEEC----CCccCHHHHHHHHHHHH-HHCCCeEEEEecCCCCcccccc
Confidence 3578998874 89999999999999999 5999998877667754444444
No 34
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.23 E-value=0.14 Score=48.21 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.-|+||||+++.|+.+| ++.|+++.+.
T Consensus 9 KGGvGKTT~a~nLA~~l-a~~G~~Vlli 35 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGL-HAMGKTIMVV 35 (269)
T ss_dssp CTTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCcEEEE
Confidence 78999999999999999 4889998764
No 35
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.12 E-value=0.15 Score=51.81 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=36.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEe--cCCCCCCcccccc
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIKG 122 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~l--RePSlGP~FGiKG 122 (564)
+++++++ .-|+||||+|..|+.+| +..|+++.+.= ++||+.-.||.+-
T Consensus 17 ~i~~~sg----kGGvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~l~~~~ 66 (334)
T 3iqw_A 17 RWIFVGG----KGGVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDAFSQKF 66 (334)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHHHTSCC
T ss_pred EEEEEeC----CCCccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHHhcccc
Confidence 4554443 66999999999999999 58899976532 6778888888764
No 36
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.94 E-value=0.19 Score=46.63 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|.|++ ..-|+||||+++.|+.+|. +.| ++.+.
T Consensus 2 vI~v~s---~KGGvGKTT~a~~LA~~la-~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVAS---FKGGVGKTTTAVHLSAYLA-LQG-ETLLI 34 (209)
T ss_dssp EEEEEE---SSTTSSHHHHHHHHHHHHH-TTS-CEEEE
T ss_pred EEEEEc---CCCCCcHHHHHHHHHHHHH-hcC-CEEEE
Confidence 455553 5679999999999999994 778 65543
No 37
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.84 E-value=0.16 Score=48.88 Aligned_cols=34 Identities=41% Similarity=0.358 Sum_probs=27.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 3 kvIav---s-~KGGvGKTT~a~nLA~~L-a~~G~rVlli 36 (289)
T 2afh_E 3 RQCAI---Y-GKGGIGKSTTTQNLVAAL-AEMGKKVMIV 36 (289)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEE---e-CCCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 45656 2 378999999999999999 5789998754
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=90.79 E-value=0.19 Score=49.03 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+..|-|+||+ |-.|.||||+|.||+++| .+.|.++..
T Consensus 19 ~m~k~i~Itg---T~t~vGKT~vs~gL~~~L-~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISA---TNTNAGKTTCARLLAQYC-NACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEE---SSTTSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCcEEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCceEE
Confidence 4578898886 567999999999999999 588988654
No 39
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.77 E-value=0.092 Score=48.06 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEec--CCCCCCcccccc
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKG 122 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lR--ePSlGP~FGiKG 122 (564)
.-|+||||+|..|+.+| ++.|+++.+.== |||+.-.||+..
T Consensus 8 kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~l~~~lg~~~ 50 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIM-ASDYDKIYAVDGDPDSCLGQTLGLSI 50 (254)
T ss_dssp SSSHHHHHHHHHHHHHH-TTTCSCEEEEEECTTSCHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCcChHHHhCCCc
Confidence 77999999999999999 588998765421 366655666543
No 40
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.46 E-value=0.19 Score=48.47 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc----CCceEEEecCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL----DKKVVTCLRQPSQG 115 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l----gk~~~~~lRePSlG 115 (564)
.+|++|++.|+ -|.||||.+--|.+.|. .. |.++ ..+|||.-+
T Consensus 23 ~~g~~I~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~g~~v-~~~rep~~t 69 (227)
T 3v9p_A 23 ARGKFITFEGI----DGAGKTTHLQWFCDRLQ-ERLGPAGRHV-VVTREPGGT 69 (227)
T ss_dssp CCCCEEEEECC----C---CHHHHHHHHHHHH-HHHGGGTCCE-EEEESSSSS
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHHHH-hhccccceee-eeecCCCCC
Confidence 35999999995 69999999999999995 55 8876 579999533
No 41
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.23 E-value=0.12 Score=50.64 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=30.4
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 60 l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.|+.. .+=|-|+||+ |..|.||||+|.||.++| .+.|.++..
T Consensus 18 ~~~~~~-~~m~~i~Itg---t~t~vGKT~vt~gL~~~l-~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQ-SHMTILVVTG---TGTGVGKTVVCAALASAA-RQAGIDVAV 60 (251)
T ss_dssp ----CC-SSCEEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHhcc-cCCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 444442 3346677775 677999999999999999 588998764
No 42
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.17 E-value=0.2 Score=48.50 Aligned_cols=36 Identities=39% Similarity=0.416 Sum_probs=28.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+|.|.|+ -+.-|+||||+|..|+.+| ++.|+++.+.
T Consensus 4 ~kvI~v~---s~KGGvGKTT~a~nLA~~L-a~~G~~Vlli 39 (286)
T 2xj4_A 4 TRVIVVG---NEKGGAGKSTIAVHLVTAL-LYGGAKVAVI 39 (286)
T ss_dssp CEEEEEC---CSSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEE---cCCCCCCHHHHHHHHHHHH-HHCCCcEEEE
Confidence 3556554 4678999999999999999 4889987643
No 43
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.97 E-value=0.23 Score=52.26 Aligned_cols=36 Identities=31% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~l-gk~~~~~ 108 (564)
..+.|+|++ +-|+|||||+..|+.+|. .. |+++.+.
T Consensus 99 ~~~vI~ivG----~~GvGKTT~a~~LA~~l~-~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAG----LQGAGKTTSVGKLGKFLR-EKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEEC----STTSSHHHHHHHHHHHHH-HTSCCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 356888876 359999999999999995 77 9987754
No 44
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.71 E-value=0.26 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+.|+.|.|++ |-|+|||||+.-|+..|. ..|+++.+.
T Consensus 103 ~~~~vI~ivG----~~G~GKTT~~~~LA~~l~-~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVG----VNGTGKTTSLAKMANYYA-ELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEES----STTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 4588999997 389999999999999994 678887654
No 45
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.82 E-value=0.28 Score=44.80 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
..|++|+++| |.|.||||++--|.+.+..++....-.+.|+|-.|.+
T Consensus 10 ~~~~~i~l~G----~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 10 ARIPPLVVCG----PSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCCCEEEEC----CTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccCCEEEEEC----CCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 4689999998 4799999999988887732244455577899987765
No 46
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.53 E-value=0.38 Score=42.97 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=30.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
|++|+++|. -|.||||.+--|++.|+ ..| + ++..++|
T Consensus 4 ~~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g-~-~~~~~~~ 40 (213)
T 2plr_A 4 GVLIAFEGI----DGSGKSSQATLLKDWIE-LKR-D-VYLTEWN 40 (213)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHHT-TTS-C-EEEEETT
T ss_pred CeEEEEEcC----CCCCHHHHHHHHHHHHh-hcC-C-EEEecCC
Confidence 789999995 69999999999999995 556 3 5667887
No 47
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.36 E-value=0.4 Score=42.53 Aligned_cols=37 Identities=38% Similarity=0.407 Sum_probs=29.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|.+|| |-|.||||++--|++.|. ..|... +..|+|.
T Consensus 2 ~I~l~G----~~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEG----IDGSGKSTQIQLLAQYLE-KRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEEC----STTSSHHHHHHHHHHHHH-HCCC-E-EEEESSC
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeE-EEeeCCC
Confidence 677877 469999999999999994 668876 5678875
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.69 E-value=2.5 Score=36.58 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=50.4
Q ss_pred HHHHhhHHHHHHHHhh--cCCcEEEEecccCCCcHHHHHHHHHHHHHcCC-CeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 433 EAGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 433 e~G~~NL~kHIeNi~~--fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~-~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..-+.++.+.++.++. .++|+|++.|+..-..+...+.+++++++.|+ . +..+. ++=|+|-.+|-+.+++.+.
T Consensus 116 ~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAV--ATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECB--GGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEe--cCCCcCHHHHHHHHHHHHH
Confidence 3445677777777744 68999999999765433344556788888888 5 44433 4567888888877777654
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.61 E-value=0.52 Score=46.82 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
..|+.|.+++- + |+|||||+.-|+..+...-|+++.+.
T Consensus 103 ~~g~vi~lvG~--~--GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGS--T--GAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEES--T--TSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECC--C--CCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35889999884 2 99999999999999942368765543
No 50
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.41 E-value=0.58 Score=41.74 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.7
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 60 l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
|++......|++|+++|+ -|.||||++--|++.|+ ..|.++.
T Consensus 4 ~~~~~~~~~~~~i~l~G~----~GsGKsT~~~~L~~~l~-~~~~~~~ 45 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGL----PGSGKTTIATRLADLLQ-KEGYRVE 45 (186)
T ss_dssp ----CCCSCCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cccccccCCCcEEEEEcC----CCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 444344457999999997 69999999999999995 5566653
No 51
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.71 E-value=0.56 Score=47.12 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+.|+.|++++ | -|+|||||+.-|+..+. .-|+++.+.
T Consensus 102 ~~~~vi~ivG--~--~GsGKTTl~~~LA~~l~-~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVG--V--NGTGKTTSCGKLAKMFV-DEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEEC--C--TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCeEEEEEc--C--CCChHHHHHHHHHHHHH-hcCCEEEEE
Confidence 4588999998 3 59999999999999994 667776544
No 52
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.64 E-value=0.48 Score=45.38 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|++|.+.|+ -|.||||.+--|.+.|. . + ...+|||.
T Consensus 4 ~g~~i~~eG~----~g~GKst~~~~l~~~l~-~---~-~~~~~ep~ 40 (216)
T 3tmk_A 4 RGKLILIEGL----DRTGKTTQCNILYKKLQ-P---N-CKLLKFPE 40 (216)
T ss_dssp CCCEEEEEEC----SSSSHHHHHHHHHHHHC-S---S-EEEEESSC
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhc-c---c-ceEEEecC
Confidence 5999999996 59999999999999884 3 2 46789984
No 53
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=86.05 E-value=0.36 Score=48.86 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 78 tPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+-..-|+||||+|+-|+.+| ++.|+++.+.
T Consensus 7 ~s~KGGvGKTT~a~nLA~~L-A~~G~rVLlI 36 (361)
T 3pg5_A 7 FNNKGGVGKTTLSTNVAHYF-ALQGKRVLYV 36 (361)
T ss_dssp CCSSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHH-HhCCCcEEEE
Confidence 34467999999999999999 5889998765
No 54
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.01 E-value=1.4 Score=37.77 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=46.2
Q ss_pred hHHHHHHHHhhc---CCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAY---GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~f---GvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.++++ ++|++|++|+..-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 102 RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETS--AKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--SSSCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 444455555543 899999999976533222 35567888888885 54443 5668999998888887664
No 55
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.92 E-value=0.75 Score=42.78 Aligned_cols=39 Identities=21% Similarity=-0.054 Sum_probs=30.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+.|.+++ |.|.||||++..|...|. ..|.++.+.-+.|.
T Consensus 5 ~~i~i~G----~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVG----YKHSGKTTLMEKWVAAAV-REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC-
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCCC
Confidence 4677777 459999999999999994 77888777666653
No 56
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.86 E-value=0.55 Score=49.76 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.+++|++++- -|.|||||+.-|+..| ...|+++.+
T Consensus 96 ~~~vI~lvG~----~GsGKTTt~~kLA~~l-~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGV----QGSGKTTTAGKLAYFY-KKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCC----TTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 4789999874 3999999999999999 477888754
No 57
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.15 E-value=0.63 Score=43.75 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
||+|.+-|+ -|.||||.+--|.+.|. + |.+ +...|||.
T Consensus 2 ~kFI~~EG~----dGsGKsTq~~~L~~~L~-~-~~~-v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGP----EGSGKTTVINEVYHRLV-K-DYD-VIMTREPG 39 (205)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSC-EEEEESST
T ss_pred CCEEEEECC----CCCcHHHHHHHHHHHHH-C-CCC-EEEeeCCC
Confidence 788988885 69999999999999994 4 766 45679995
No 58
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.09 E-value=0.51 Score=43.53 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
+.|++|.++| |.|.||||+.--|.+-+...++......-|.|.-|
T Consensus 6 ~~g~~i~l~G----psGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 6 ERGLLIVLSG----PSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 5699999987 78999999988887666311333344456666544
No 59
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.74 E-value=0.76 Score=48.96 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+++|++++- -|+|||||+..|+..|. +.|+++.+.
T Consensus 99 ~p~vIlivG~----~G~GKTTt~~kLA~~l~-~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGI----QGSGKTTTVAKLARYFQ-KRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECC----TTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCeEEEEECc----CCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 4678999884 59999999999999994 779887654
No 60
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.68 E-value=0.73 Score=44.43 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
..|.++++|| |.|.||||..++++.-+. .-|+++.+. +|+.+.-
T Consensus 10 ~~G~i~litG----~mGsGKTT~ll~~~~r~~-~~g~kVli~--~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITG----PMFAGKTAELIRRLHRLE-YADVKYLVF--KPKIDTR 53 (223)
T ss_dssp -CCEEEEEEC----STTSCHHHHHHHHHHHHH-HTTCCEEEE--EECCCGG
T ss_pred CCcEEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEEE--EeccCch
Confidence 4599999998 679999999999998884 568887643 7777643
No 61
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.67 E-value=0.74 Score=44.37 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=58.9
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC--CCCcccCC
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFLYP 519 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~--~~fk~LYd 519 (564)
+..+..+++|+|+++|+..-....++. .+.++++..|++ ++.+ =++-|+|-.+|-+.+++.+..+. .+++..|+
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~ 179 (258)
T 3a1s_A 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFT--SSVTGEGLEELKEKIVEYAQKNTILHRMILDYG 179 (258)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEEC--CTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCC
T ss_pred HHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEE--EeeCCcCHHHHHHHHHHHhhccccCCCcccCCc
Confidence 344566899999999986432221111 146677888987 5433 35678999999999998876321 23455664
Q ss_pred CCCCHHHHHHHHHh-H
Q 008480 520 LDVSIKEKIDTIAR-S 534 (564)
Q Consensus 520 ~~~~I~eKIetIA~-I 534 (564)
..+++.|..|.+ +
T Consensus 180 --~~~~~~i~~~~~~~ 193 (258)
T 3a1s_A 180 --EKVESEIKKVENFL 193 (258)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHH
Confidence 468889999888 6
No 62
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.04 E-value=1.2 Score=42.84 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHH-HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi-~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
...+..+++|+|+++|+..--...++ ..+.++++..|++ ++.+. ++-|+|-.+|-+.+++. +.+ .. .|+.
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~~-~~~-~~---~y~~- 173 (256)
T 3iby_A 103 TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ--AHKNIGIPALQQSLLHC-SQK-IK---PLKL- 173 (256)
T ss_dssp HHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB--GGGTBSHHHHHHHHHTC-CSC-CC---CCCC-
T ss_pred HHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHhh-hcC-cc---cCCH-
Confidence 34456789999999998643212111 1234566778987 54433 66689999999999887 432 21 5654
Q ss_pred CCHHHHHHHHHh
Q 008480 522 VSIKEKIDTIAR 533 (564)
Q Consensus 522 ~~I~eKIetIA~ 533 (564)
.+++.|..|..
T Consensus 174 -~~e~~i~~i~~ 184 (256)
T 3iby_A 174 -SLSVAAQQILN 184 (256)
T ss_dssp -CCCHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 45555666555
No 63
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.78 E-value=0.65 Score=43.48 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
+|++|.+.|+ -|.||||.+-.|++.|. + +.++|||.-.+
T Consensus 1 ~~~~i~~~G~----~g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 1 GPRRLSIEGN----IAVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CCEEEEEEEC----TTSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCeEEEEEcC----CCCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 3789999997 79999999999988873 2 35688885443
No 64
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.64 E-value=1.3 Score=43.50 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.+||+.++.. -|-|.||||+++.++..| ...|+++.+..=+|
T Consensus 3 ~~g~l~I~~~---~kgGvGKTt~a~~la~~l-~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLG---AAPGVGKTYAMLQAAHAQ-LRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEE---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CCceEEEEEE---CCCCCcHHHHHHHHHHHH-HHCCCCEEEEEeCC
Confidence 4688866655 367999999999999999 47899988777776
No 65
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=83.62 E-value=0.81 Score=46.34 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcE-----EEEecccCCCcHHHHHHHHHHHHHcCC
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANV-----VVAVNMFATDSKAELNAVRNAAMAAGA 480 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPv-----VVAIN~F~tDT~aEi~~v~~~~~~~G~ 480 (564)
++.+..+|+.+|.+-++.++++|.++ |..+|.+... ...-+...+.++..|.
T Consensus 280 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~-~~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 280 DFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK-ADHKYCHSLAKEVFGG 336 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC-HHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc-hhHHHHHHHHHHHhcc
Confidence 45667889999999999999887553 5567777543 2222233444455554
No 66
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.99 E-value=1 Score=40.52 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=33.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
|+.|.++| |-|.||||+.--|..-+....|.....+-|.|.-|-+
T Consensus 1 ~~ii~l~G----psGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEES----SSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 34555555 7899999999888776643577777888898887743
No 67
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.75 E-value=1.1 Score=42.53 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=34.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
..|++|+++|+ -|.||||.+--|++.|+ . |.+. ...|+|.-.|
T Consensus 24 ~~g~~i~i~G~----~GsGKsT~~~~l~~~l~-~-~~~~-~~~~~p~~~~ 66 (229)
T 4eaq_A 24 AMSAFITFEGP----EGSGKTTVINEVYHRLV-K-DYDV-IMTREPGGVP 66 (229)
T ss_dssp CCCEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSCE-EEECTTTTCH
T ss_pred CCCeEEEEEcC----CCCCHHHHHHHHHHHHh-c-CCCc-eeecCCCCCc
Confidence 46999999996 59999999999999995 5 6654 5678886443
No 68
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.37 E-value=0.94 Score=39.45 Aligned_cols=69 Identities=20% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHH-HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcC
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi-~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~ 510 (564)
+...++.+++.++|++++.|+-.-....++ +.+.+++++.|.. +..+. ++-|+|-.+|-+.+++.+.+.
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEE--ecCCCCHHHHHHHHHHHHHhc
Confidence 344566667789999999998532111111 1345667777886 55444 566889999999999988653
No 69
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=82.28 E-value=4.7 Score=38.24 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=42.3
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-++|+|++.|+-.-..+.+++.+++++++. ++. +..+ =++=|+|-.+|-+.+++.+
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e~--SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVET--SARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEEC--BTTTTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEEE--ECCCCCCHHHHHHHHHHHh
Confidence 479999999998766677788888888864 665 4433 3567788888888777665
No 70
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.08 E-value=1.1 Score=44.45 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|+.|.+++ |-|+||||++.-|+..+ ...|+++.+.
T Consensus 97 ~~~~i~i~g----~~G~GKTT~~~~la~~~-~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYY-KGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEEC----CTTTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCeEEEe
Confidence 588888875 45999999999999999 4667776543
No 71
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=81.86 E-value=0.81 Score=46.53 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=33.5
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCc-----EEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 428 NVALVEAGCVNLARHIANTKAYGAN-----VVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvP-----vVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
++.+..+|+.+|.+-++.++++|.+ +|..+|+|.. +...-+...+.++..|..
T Consensus 283 ~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~-~~~~~~~~~~~~~~~g~~ 340 (403)
T 3ez9_A 283 DFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG-KRDHETSHSLAREVYASN 340 (403)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----CHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-chhHHHHHHHHHHHhhHh
Confidence 4556788999999999999998766 3668898863 322222333334456765
No 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=81.73 E-value=2 Score=37.69 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=45.6
Q ss_pred hHHHHHHHHhhc---CCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAY---GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~f---GvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.++++ ++|+||++|+..-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 112 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 112 AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS--AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 444455555553 899999999976543222 34567788888885 44333 5668998888888887663
No 73
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.50 E-value=1.2 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=28.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
.++.|.+++ |-|+|||||+..|+..|. ..|+++.+
T Consensus 97 ~~~vi~i~G----~~GsGKTT~~~~LA~~l~-~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYYK-GKGRRPLL 131 (425)
T ss_dssp SSEEEEEEC----CTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 477888875 469999999999999994 66777654
No 74
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.48 E-value=1.3 Score=44.07 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=28.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
++.|.+++ |-|+||||++.-|+..+. ..|+++.+.
T Consensus 98 ~~vi~i~G----~~G~GKTT~~~~la~~~~-~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVG----VQGTGKTTTAGKLAYFYK-KKGFKVGLV 132 (297)
T ss_dssp SEEEEEEC----SSCSSTTHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 78888875 459999999999999994 778876654
No 75
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=81.30 E-value=6.8 Score=38.55 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=53.7
Q ss_pred HHHHhhcCCcEEEEecccCCC-cHHH-HHHHHHHHHHcC--CCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 443 IANTKAYGANVVVAVNMFATD-SKAE-LNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tD-T~aE-i~~v~~~~~~~G--~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
++.+++.++|+|+++|+..-. ..++ .+.+.++++..+ .. ++. .=++-|+|-.+|-+.+.+.+.+.+..|..-+
T Consensus 115 ~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~-i~~--vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~ 191 (308)
T 3iev_A 115 QNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE-IVP--ISALKGANLDELVKTILKYLPEGEPLFPEDM 191 (308)
T ss_dssp HHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC-EEE--CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTC
T ss_pred HHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe-EEE--EeCCCCCCHHHHHHHHHHhCccCCCCCCccc
Confidence 667777899999999997653 3333 344555666665 33 333 3367789999999999998865322222222
Q ss_pred CCCCCHHHHHHHHHh
Q 008480 519 PLDVSIKEKIDTIAR 533 (564)
Q Consensus 519 d~~~~I~eKIetIA~ 533 (564)
-.+.+.+.-+..+.+
T Consensus 192 ~td~~~~~~~~e~ir 206 (308)
T 3iev_A 192 ITDLPLRLLAAEIVR 206 (308)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 223455544444433
No 76
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.16 E-value=0.77 Score=40.22 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+++|+++|. .|.||||++--|++.|+
T Consensus 3 ~~~i~l~G~----~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGG----SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECC----TTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 678999995 79999999988888773
No 77
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=80.80 E-value=1.6 Score=42.28 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=51.4
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
+..+..+++|+|+++|+..-....++. .+.++++..|++ ++.+. ++-|+|-.+|-+.+.+.+.+. ......|.
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~S--A~~g~gi~el~~~i~~~~~~~-~~~~~~~~-- 178 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLV--STRGRGIEALKLAIDRYKANE-NVELVHYA-- 178 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECC--CGGGHHHHHHHHHHHTCCCCC-CCCCCCCC--
T ss_pred HHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHHHHhcC-CCcccCCC--
Confidence 344556799999999986432221111 235667778887 44433 667899999988888776532 11223343
Q ss_pred CCHHHHHHHHHh
Q 008480 522 VSIKEKIDTIAR 533 (564)
Q Consensus 522 ~~I~eKIetIA~ 533 (564)
..+++.+..|..
T Consensus 179 ~~l~~~~~~i~~ 190 (274)
T 3i8s_A 179 QPLLNEADSLAK 190 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346666666655
No 78
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=80.74 E-value=1.1 Score=47.22 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+.|++++ | -|+|||||+..|+..+. ..|+++.+.
T Consensus 99 ~~vI~ivG--~--~GvGKTTla~~La~~l~-~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVG--I--QGSGKTTTAAKLARYIQ-KRGLKPALI 133 (432)
T ss_dssp CCCEEEEC--C--SSSSTTHHHHHHHHHHH-HHHCCEEEE
T ss_pred CeEEEEEC--C--CCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 45888888 3 39999999999999995 678887654
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=80.60 E-value=2.7 Score=36.91 Aligned_cols=69 Identities=13% Similarity=0.012 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhh------cCCcEEEEecccCCCc-HHH--HHHHHHHHHHcCCCeEEEcCccccC-ccchHHHHHHHHHH
Q 008480 437 VNLARHIANTKA------YGANVVVAVNMFATDS-KAE--LNAVRNAAMAAGAFDAVVCSHHAHG-GKGAVDLGIAVQRA 506 (564)
Q Consensus 437 ~NL~kHIeNi~~------fGvPvVVAIN~F~tDT-~aE--i~~v~~~~~~~G~~~~~vs~~wakG-GeGa~eLA~~Vvea 506 (564)
.++.+.++.++. .++|+||++|+..-.. +.+ .+.+++++++.|+. +..+.. +- |+|-.+|-+.+++.
T Consensus 113 ~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 113 ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSA--NPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEecc--CCCCcCHHHHHHHHHHH
Confidence 345555555554 4899999999976543 222 35667888888875 554444 44 68888888777776
Q ss_pred hh
Q 008480 507 CE 508 (564)
Q Consensus 507 ~e 508 (564)
+.
T Consensus 190 ~~ 191 (208)
T 2yc2_C 190 FY 191 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 80
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=80.20 E-value=1.5 Score=41.03 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
..|+++++|| |.|.||||..++++.-+ ...|+++.+. +|+...-+|
T Consensus 6 ~~g~i~v~~G----~mgsGKTT~ll~~a~r~-~~~g~kV~v~--k~~~d~r~~ 51 (191)
T 1xx6_A 6 DHGWVEVIVG----PMYSGKSEELIRRIRRA-KIAKQKIQVF--KPEIDNRYS 51 (191)
T ss_dssp TCCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEE--EEC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCccch
Confidence 4599999998 78999999999998877 3568776543 577664443
No 81
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=79.99 E-value=2.4 Score=44.01 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=60.2
Q ss_pred CCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhh--cCCcEE-EEecccCCCcH
Q 008480 389 SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA--YGANVV-VAVNMFATDSK 465 (564)
Q Consensus 389 ~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~--fGvPvV-VAIN~F~tDT~ 465 (564)
.|.+|+++|||.... +++--|.|.. |+|+ ++..- .+...+..++. .|++|+ +++|.|.-|.+
T Consensus 250 ~g~~p~~vILv~~~~-~g~i~~~~~~----~~p~------l~~~i----~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~ 314 (349)
T 2obn_A 250 RGSQPTQLVLVHRAG-QTHNGNNPHV----PIPP------LPEVI----RLYETVASGGGAFGTVPVVGIALNTAHLDEY 314 (349)
T ss_dssp HHHCCSEEEEEEETT-CCBCSSCTTS----BCCC------HHHHH----HHHHHHHHTTTTSCCCCEEEEEEECTTSCHH
T ss_pred HHcCCCeEEEEECCC-CceECCCCcc----CCCC------HHHHH----HHHHHHHHhhccCCCCcEEEEEEECCCCCHH
Confidence 578999999998542 4444455432 3432 22111 23334444455 788887 78899999888
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 466 AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 466 aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
++-+.+++.-++.|++ +.+.+.. |+-.|.++++
T Consensus 315 ~~~~~~~~ie~~~glP---v~d~~r~---g~~~l~~~~~ 347 (349)
T 2obn_A 315 AAKEAIAHTIAETGLP---CTDVVRF---GADVLLDAVM 347 (349)
T ss_dssp HHHHHHHHHHHHHCSC---EECHHHH---CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---EEEEecC---CHHHHHHHHh
Confidence 7777888877889998 4466665 4455555554
No 82
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=79.98 E-value=10 Score=36.31 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cccCC---CcHHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHA 490 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-----N~F~t---DT~aE-------i~~v~~~~~~~G~~~~~vs~~wa 490 (564)
.+|-+.-++.+..+++.|+..+.+|.+.||.- .+|+. ++++. ++.+.+.+++.|+. +++-+++.
T Consensus 96 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~ 174 (309)
T 2hk0_A 96 SEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEVLNR 174 (309)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeccc
Confidence 45666677888999999999999999999853 33322 33333 33444566678996 77777742
Q ss_pred c-C-ccchHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 491 H-G-GKGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 491 k-G-GeGa~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
. + --...+-+.++++.+.. .++.+++|. ..++.+=|+....
T Consensus 175 ~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~H~~~~g~d~~~~l~~~~~ 223 (309)
T 2hk0_A 175 FENHVLNTAAEGVAFVKDVGK--NNVKVMLDTFHMNIEEDSFGDAIRTAGP 223 (309)
T ss_dssp TTCSSCCSHHHHHHHHHHHTC--TTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred ccccccCCHHHHHHHHHHcCC--CCeEEEEehhhHhhcCcCHHHHHHHHHh
Confidence 1 1 11234455566666642 457777754 2345555555544
No 83
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=79.67 E-value=4.3 Score=34.16 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=40.0
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+++++|+..-+. ....+.+++++++.|+. +..+. ++-|+|-.+|-+.+.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 107 DEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 4899999999975421 11234456778888886 54443 45678888888888877653
No 84
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.51 E-value=1.5 Score=43.18 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+..+|.||| |.|.||||++--|.+.|+
T Consensus 4 ~~~iIgItG----~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTG----SSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEES----CC---CCTHHHHHHHHHH
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 356888988 899999999999999885
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=79.48 E-value=4.1 Score=33.81 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.0
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+-.-.. +...+.+++++++.|++ +..+ =++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIET--SAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEE--CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 4899999999976322 12234456777888886 4433 35667888888888887663
No 86
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=79.17 E-value=1.8 Score=39.80 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcc
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~F 118 (564)
|+++++|| |.|.||||+.++++.-+ ...|+++.. =+|+...-+
T Consensus 3 g~i~vi~G----~~gsGKTT~ll~~~~~~-~~~g~~v~~--~~~~~d~r~ 45 (184)
T 2orw_A 3 GKLTVITG----PMYSGKTTELLSFVEIY-KLGKKKVAV--FKPKIDSRY 45 (184)
T ss_dssp CCEEEEEE----STTSSHHHHHHHHHHHH-HHTTCEEEE--EEEC-----
T ss_pred cEEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEE--Eeecccccc
Confidence 78999998 67999999999998877 355777553 356665433
No 87
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=79.06 E-value=4.6 Score=35.12 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=44.7
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.+.. -++|+|+++|+..-..+. +.+..++++++.++. +..+. ++-|+|-.++-+.+++.+.
T Consensus 106 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 33444444444 489999999997643322 224567788888987 44433 5678888888777777665
No 88
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.93 E-value=1.2 Score=38.90 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++|+++|+ -|.||||++--|++.|+
T Consensus 3 ~~~I~i~G~----~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGV----PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECC----TTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH
Confidence 678999985 79999999999988885
No 89
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.72 E-value=1.4 Score=41.01 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.|+-+.++.++. +.|.||||++.-|+.+| . .|+++.+.=-.|.
T Consensus 10 ~~~~~~i~~~~G-kgGvGKTTl~~~La~~l-~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 10 HGMASMIVVFVG-TAGSGKTTLTGEFGRYL-E-DNYKVAYVNLDTG 52 (262)
T ss_dssp TTCCCEEEEEEC-STTSSHHHHHHHHHHHH-T-TTSCEEEEECCSS
T ss_pred CCcceEEEEEeC-CCCCCHHHHHHHHHHHH-H-CCCeEEEEeCCCC
Confidence 355555555544 67999999999999999 5 7988776655653
No 90
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.62 E-value=2.1 Score=39.52 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=30.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.|.++| |.|.||||+.-.|.+.|. ..|.+....-+.|
T Consensus 7 ~~i~i~G----~sGsGKTTl~~~l~~~l~-~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAA----WSGTGKTTLLKKLIPALC-ARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred eEEEEEe----CCCCCHHHHHHHHHHhcc-ccCCceeEEeeCC
Confidence 4677777 679999999999999994 7788876666665
No 91
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=78.59 E-value=1.5 Score=41.96 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+++|+++|+ -|.||||++--|++.|. .+|...+
T Consensus 3 ~~~lIvl~G~----pGSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGL----PGVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCEEEEEEcC----CCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 3679999997 69999999999999984 6777655
No 92
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=78.53 E-value=11 Score=36.93 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=44.5
Q ss_pred HHhhcCCcEEEEecccCCCc-HHHH-HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 445 NTKAYGANVVVAVNMFATDS-KAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 445 Ni~~fGvPvVVAIN~F~tDT-~aEi-~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.+++.+.|+++++|+-.-.. .+++ +.+.++++..|...++ ..-++=|+|-.+|.+.+.+.+..
T Consensus 111 ~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i--~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 111 KLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV--PISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE--ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE--EEECCCCCCHHHHHHHHHHhCCc
Confidence 44568999999999987766 4555 5566666666763233 34467788999999998877643
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=78.50 E-value=3.3 Score=35.74 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=40.7
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.++. .++|+|+++|+..-..+. ..+.++++|++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 98 NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETS--AKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECC--C---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 44455555554 489999999997653211 134456788888885 54443 4557888888777776654
No 94
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=78.36 E-value=3.3 Score=36.67 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=39.3
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccc-cCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wa-kGGeGa~eLA~~Vvea~e 508 (564)
.++|+|++.|+..-..+.+ .+.+++++++.|+. +..+. + +-|+|-.+|-+.+++.+.
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S--a~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVS--ACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECC--SSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEe--ecCccccHHHHHHHHHHHHh
Confidence 4899999999965432211 24456788888885 54443 4 567888888888887664
No 95
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.13 E-value=1.6 Score=39.16 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
.|++|.++| |.|.||||+.--|..-+...........-|+|..|
T Consensus 4 ~g~~i~i~G----psGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 4 MRKTLVLLG----AHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 488888887 78999999888776654211223333455666655
No 96
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=78.08 E-value=5.3 Score=33.84 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=43.1
Q ss_pred hHHHHHHHHhhc----CCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAY----GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~f----GvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++...++.+.++ ++|+|+++|+..-..+.+ .+..++++++.|.. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 95 SASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIET--SATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEE--ecCCCCCHHHHHHHHHHHHH
Confidence 444444444443 899999999976533222 23456677777875 4433 35668898888888877664
No 97
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=77.77 E-value=6.4 Score=33.50 Aligned_cols=57 Identities=9% Similarity=-0.090 Sum_probs=38.1
Q ss_pred cCCcEEEEecccCCC-cHHHHHHHHHHHH-HcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATD-SKAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tD-T~aEi~~v~~~~~-~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+..-. .+...+.++++++ ..+.. +..+. ++-|+|-.++-+.+++.+-
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETS--AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 789999999997642 1222344566777 44554 54444 4568898888888887664
No 98
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=77.56 E-value=20 Score=33.72 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=66.3
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec---ccCC---CcHHH-------HHHHHHHHHHcCCCeEEEcCc--
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH-- 488 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN---~F~t---DT~aE-------i~~v~~~~~~~G~~~~~vs~~-- 488 (564)
+..+|.+..++.+..+++.|+..+.+|.+.||.-- .|.. ++++. ++.+.+.|++.|+. +++-+|
T Consensus 91 l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~ 169 (287)
T 3kws_A 91 ILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPLNR 169 (287)
T ss_dssp TTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCCCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCc
Confidence 33566777888899999999999999999988732 2221 44444 34455567788997 777654
Q ss_pred cccCccchHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 489 HAHGGKGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 489 wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
|...--...+-+.++++.+. +.++.++||. ..++.+=|+....
T Consensus 170 ~~~~~~~~~~~~~~ll~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 218 (287)
T 3kws_A 170 KECFYLRQVADAASLCRDIN--NPGVRCMGDFWHMTWEETSDMGAFISGGE 218 (287)
T ss_dssp TTCSSCCCHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred ccCcccCCHHHHHHHHHHcC--CCCeeEEeehHHHHhcCCCHHHHHHHhhh
Confidence 32111123444556666664 2457776653 3455555665544
No 99
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=77.38 E-value=3.5 Score=40.26 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHhhcCCcEEEEecccCCCcHHHH-HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC-CCCcccCCCC
Q 008480 444 ANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-QPLKFLYPLD 521 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~aEi-~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~-~~fk~LYd~~ 521 (564)
..+..+++|+|+++|+..-....++ ..+.++++..|++ ++.+ =++=|+|-.+|-+.+++.+.... .+++.-| .
T Consensus 101 ~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~--~ 175 (272)
T 3b1v_A 101 TQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVAT--SALKQTGVDQVVKKAAHTTTSTVGDLAFPIY--D 175 (272)
T ss_dssp HHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEEC--BTTTTBSHHHHHHHHHHSCTTTCCSCCCCCC--C
T ss_pred HHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEE--EccCCCCHHHHHHHHHHHHhhccCCCccCCC--C
Confidence 3445589999999998532111100 1235667778987 5433 35678999999999988775321 2234446 3
Q ss_pred CCHHHHHHHHHh-H
Q 008480 522 VSIKEKIDTIAR-S 534 (564)
Q Consensus 522 ~~I~eKIetIA~-I 534 (564)
..+++-|+.|.. +
T Consensus 176 ~~~e~~i~~~~~~~ 189 (272)
T 3b1v_A 176 DRLEAAISQILEVL 189 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 457777887777 5
No 100
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.33 E-value=2.4 Score=37.16 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+|.+||. -|.||||.+--|++-|. ..|... +..|+|+
T Consensus 2 ~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~~-i~~d~~~ 38 (195)
T 2pbr_A 2 LIAFEGI----DGSGKTTQAKKLYEYLK-QKGYFV-SLYREPG 38 (195)
T ss_dssp EEEEECS----TTSCHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEEeCCC
Confidence 6778875 69999999999999884 457764 4568764
No 101
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.31 E-value=1.5 Score=38.68 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.+++|+++|+ -|.||||++--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGH----PATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHc
Confidence 34789999995 6999999998888777
No 102
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=77.30 E-value=5 Score=34.46 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=43.8
Q ss_pred hHHHHHHHHhh----cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++...++.+.. .++|+|+++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS--AANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 33444444443 589999999997653321 234567788888886 44433 4567888888777776653
No 103
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=77.29 E-value=7.1 Score=32.67 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=37.5
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++|+++++|+..-..+.+ .+.+++++++. +.. +..+ =++-|+|-.+|-+.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA-FLES--SAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCE-EEEC--BTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCc-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 5899999999976532221 34556777776 554 4433 3567888888888877665
No 104
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.06 E-value=2.3 Score=41.19 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
..|++.++|+ |.|.||||..++++.-. ...|+++.+. +|+.+.-+|
T Consensus 26 ~~G~l~vitG----~MgsGKTT~lL~~a~r~-~~~g~kVli~--k~~~d~R~g 71 (214)
T 2j9r_A 26 QNGWIEVICG----SMFSGKSEELIRRVRRT-QFAKQHAIVF--KPCIDNRYS 71 (214)
T ss_dssp CSCEEEEEEC----STTSCHHHHHHHHHHHH-HHTTCCEEEE--ECC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCCcch
Confidence 5699999998 78999999999998877 4668886653 588775554
No 105
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.05 E-value=1.3 Score=39.44 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
.|++|.++|+ -|.||||.+--|++.|+ |.+ +..+++|.-++
T Consensus 3 ~~~~I~l~G~----~GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~ 43 (204)
T 2v54_A 3 RGALIVFEGL----DKSGKTTQCMNIMESIP---ANT-IKYLNFPQRST 43 (204)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHTSC---GGG-EEEEESSCTTS
T ss_pred CCcEEEEEcC----CCCCHHHHHHHHHHHHC---CCc-eEEEecCCCCC
Confidence 4889999996 69999999888877651 344 44567876443
No 106
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.92 E-value=1.2 Score=38.56 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++|++|| +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVG----ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEES----CTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 5788888 589999999988888773
No 107
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=76.90 E-value=1.4 Score=41.00 Aligned_cols=31 Identities=42% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 81 P~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+-|.||||.+--|.+.|. ..|.++ ...|||.
T Consensus 8 ~DGsGKsTq~~~L~~~L~-~~g~~v-~~treP~ 38 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLE-KRGKKV-ILKREPG 38 (197)
T ss_dssp STTSSHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcE-EEEECCC
Confidence 369999999999999994 778875 5689995
No 108
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.73 E-value=1.8 Score=46.69 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+.|++++- | |+|||||+.-|+..|. +.|+++.+.
T Consensus 101 ~~vI~ivG~---~-GvGKTTl~~kLA~~l~-~~G~kVllV 135 (504)
T 2j37_W 101 QNVIMFVGL---Q-GSGKTTTCSKLAYYYQ-RKGWKTCLI 135 (504)
T ss_dssp -EEEEEECS---T-TSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEECC---C-CCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 457777764 2 9999999999999995 678886544
No 109
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=76.57 E-value=8.2 Score=32.94 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=45.5
Q ss_pred hHHHHHHHHh---hcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 438 NLARHIANTK---AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 438 NL~kHIeNi~---~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++.+.++.++ ..++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+.+.+.+
T Consensus 101 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 101 NIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS--AKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 3334444443 3689999999997654322 233456778888886 55443 56678888888888887753
No 110
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.39 E-value=1.7 Score=39.82 Aligned_cols=45 Identities=33% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
.|+.|.+.| |-|.||||+.--|..-+....|.......|.|..|-
T Consensus 3 ~g~~i~lvG----psGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 3 GPRPVVLSG----PSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp --CCEEEEC----CTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 477777777 679999999887765442234555555667777763
No 111
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.28 E-value=5.8 Score=33.02 Aligned_cols=57 Identities=19% Similarity=0.068 Sum_probs=39.4
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+..-..+.+ .+..++++++.|++ +..+. ++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS--AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec--CCCCcCHHHHHHHHHHHHh
Confidence 5899999999975322222 23456778888886 44433 5668898888888877664
No 112
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=76.11 E-value=4.5 Score=34.37 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
+...+......++|+++++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEAS--AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 33444445557899999999976533222 35567888888885 54443 456788888887777665
No 113
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.04 E-value=2.1 Score=40.62 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
.|++|.++| |.|.||||+..-|.+-+...+....-.+-|+|.-|-
T Consensus 18 ~g~~ivl~G----PSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 18 GRKTLVLIG----ASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp SCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCEEEEEC----cCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 589999887 789999999888876652234455556778888763
No 114
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=75.99 E-value=2.5 Score=36.88 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=23.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
++|+++|+ -|.||||.+--|++.|+ ..|..
T Consensus 2 ~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g~~ 31 (194)
T 1nks_A 2 KIGIVTGI----PGVGKSTVLAKVKEILD-NQGIN 31 (194)
T ss_dssp EEEEEEEC----TTSCHHHHHHHHHHHHH-TTTCC
T ss_pred eEEEEECC----CCCCHHHHHHHHHHHHH-hcCce
Confidence 47888884 79999999999999985 34443
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.96 E-value=1.5 Score=38.68 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++.|+++|. .|.||||++.-|++.|
T Consensus 4 ~~~~i~l~G~----~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL----MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678888885 7999999998888777
No 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.87 E-value=1.5 Score=40.66 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCceEEEecCCCCCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPSQGPT 117 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~-qaL~~~lgk~~~~~lRePSlGP~ 117 (564)
+.|++|.++| |-|.||||+.--|+ .-+. .+....-..-|.|..|-+
T Consensus 25 ~~G~ii~l~G----p~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 25 SVGVILVLSS----PSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp ECCCEEEEEC----SCC----CHHHHHHC-----CEEECCCEESSCCCTTCC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCcccc
Confidence 4589998887 67999999988887 5442 232233344566665533
No 117
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=75.80 E-value=7.6 Score=37.82 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=69.0
Q ss_pred ccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cc
Q 008480 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM 459 (564)
Q Consensus 385 kcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-----N~ 459 (564)
.++..||+|-+++.+. |-. +. -.+..+|-+.-++.+..++++|+..+.+|.++|+.. .+
T Consensus 73 ~l~~~gL~~~~i~~~~-------~~~-~~--------~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~ 136 (335)
T 2qw5_A 73 YLDSEGLENVKISTNV-------GAT-RT--------FDPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGV 136 (335)
T ss_dssp HHHHTTCTTCEEEEEC-------CCC-SS--------SCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred HHHHCCCCcceeEEEe-------ccC-CC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCcccc
Confidence 4778899876555431 110 10 123345667778899999999999999999999642 44
Q ss_pred cCC--C------------cHHH-------HHHHHHHHHHcCCCeEEEcCccc-cC-ccchHHHHHHHHHHhhcCCCCCcc
Q 008480 460 FAT--D------------SKAE-------LNAVRNAAMAAGAFDAVVCSHHA-HG-GKGAVDLGIAVQRACENVTQPLKF 516 (564)
Q Consensus 460 F~t--D------------T~aE-------i~~v~~~~~~~G~~~~~vs~~wa-kG-GeGa~eLA~~Vvea~e~~~~~fk~ 516 (564)
|+. + +++. ++.+.+.|++.|+. +++-++.. .+ --...+-+.++++.+. +.++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~t~~~~~~ll~~v~--~~~vgl 213 (335)
T 2qw5_A 137 FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LAIEPITHWETPGPNKLSQLIEFLKGVK--SKQVGV 213 (335)
T ss_dssp CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEECCCCTTTCSSCCSHHHHHHHHTTCC--CTTEEE
T ss_pred ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccccccCCHHHHHHHHHhcC--CCCeeE
Confidence 533 2 3433 34455667788996 77766532 11 1112333444555543 235777
Q ss_pred cCCC
Q 008480 517 LYPL 520 (564)
Q Consensus 517 LYd~ 520 (564)
+||.
T Consensus 214 ~~D~ 217 (335)
T 2qw5_A 214 VIDS 217 (335)
T ss_dssp EEEH
T ss_pred EEec
Confidence 6654
No 118
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=75.69 E-value=4.2 Score=34.79 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=39.9
Q ss_pred cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|++|++|+..-..+ ...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999754222 2245567788888885 44433 5567888888888877664
No 119
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.69 E-value=0.94 Score=40.74 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=28.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
++|.|+| |-|.||||.+--|.+.|. ..|.+ +..+|+|.
T Consensus 1 ~~I~i~G----~~GsGKsTl~~~L~~~l~-~~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 1 MLIAIEG----VDGAGKRTLVEKLSGAFR-AAGRS-VATLAFPR 38 (214)
T ss_dssp CEEEEEE----EEEEEHHHHHHHHHHHHH-EEEEE-EEEEESSE
T ss_pred CEEEEEc----CCCCCHHHHHHHHHHHHH-hcCCe-EEEEeecC
Confidence 4677887 569999999999999995 45554 44677754
No 120
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=75.52 E-value=7 Score=32.91 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 437 VNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 437 ~NL~kHIeNi~~----fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++...++.+.+ .++|+|++.|+-.-.. +-..+..++++...++. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 89 EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIET--SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEEC--BGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEe--ccCCCCCHHHHHHHHHHHHH
Confidence 344444444444 4899999999976432 22234456777888875 4433 35668999998888887764
No 121
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=75.49 E-value=7.9 Score=40.39 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEE
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVA 456 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVA 456 (564)
-++.+.|+++||+++.++|+|+|+.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788999999999999999998764
No 122
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=75.44 E-value=6.8 Score=33.65 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred hHHHHHHHHhh-cCCcEEEEecccCCC-cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA-YGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~-fGvPvVVAIN~F~tD-T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++...++.+.. .+.|+|+++|+...+ .+...+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 134 ~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 134 RAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTS--AKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 44455555554 569999999997621 122345667888888885 44333 5567888888888877664
No 123
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=75.36 E-value=9.9 Score=32.72 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=41.1
Q ss_pred hhcCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCCeEEEcCcccc-CccchHHHHHHHHHHhh
Q 008480 447 KAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRACE 508 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~~~~vs~~wak-GGeGa~eLA~~Vvea~e 508 (564)
...++|+|+++|+..-.. +...+.++++|++.++. +..+. ++ -|+|-.++-+.+++.+.
T Consensus 120 ~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS--AKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB--CSSSCBSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec--cCCCCCCHHHHHHHHHHHHh
Confidence 347899999999976422 22234457788888886 44333 45 78999998888887664
No 124
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=75.24 E-value=7.9 Score=40.61 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCCCc----HHHHH----HHHHHHHHc-CCC
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAELN----AVRNAAMAA-GAF 481 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~tDT----~aEi~----~v~~~~~~~-G~~ 481 (564)
....|+..++..|+| +||++|+-.-.+ ++.++ .+++++++. |+.
T Consensus 168 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~ 221 (467)
T 1r5b_A 168 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN 221 (467)
T ss_dssp CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345788888889998 999999976532 33333 356666666 653
No 125
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.00 E-value=1.9 Score=38.09 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++++|+++|. -|.||||++--|++.|+
T Consensus 8 ~~~~I~l~G~----~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGG----PGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEEC----TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4789999994 79999999988887773
No 126
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.87 E-value=2.1 Score=43.76 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.|.+|+|+| |-|.|||||.-.|..-++ .-....+..+.+|.
T Consensus 122 ~~g~i~I~G----ptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTG----PTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEEC----STTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence 355999998 679999999999988884 54345577788774
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.61 E-value=1.8 Score=37.29 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|+++| |-|.||||++--|++.|
T Consensus 3 ~i~l~G----~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEG----PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEEC----SSSSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHh
Confidence 678887 57999999988887776
No 128
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.51 E-value=6.9 Score=32.57 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=39.3
Q ss_pred cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+..-..+ ...+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS--AKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 48999999999764322 2234567778888875 44433 5567888888888877653
No 129
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=74.50 E-value=7.4 Score=33.85 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=39.7
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|++|++|+..-.. +...+.+++++++.|+. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIET--SAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEC--CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 5899999999976432 11233456778888886 4443 35667888888888887765
No 130
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=74.44 E-value=9.7 Score=35.91 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-cccCCCcHHH-------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHH
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~tDT~aE-------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
.-++.+..+++.|+..+.+|.+.||.. ...+.++++. ++.+.+.|++.|+. +++-+++ ...+-+.+
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~-----~~~~~~~~ 169 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ-----ESADHLLE 169 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS-----SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC-----CCHHHHHH
Confidence 346667899999999999999999874 3334443333 44455667788996 7787775 23555667
Q ss_pred HHHHhhcCCCCCcccCCC-------CCCHHHHHHHHHh
Q 008480 503 VQRACENVTQPLKFLYPL-------DVSIKEKIDTIAR 533 (564)
Q Consensus 503 Vvea~e~~~~~fk~LYd~-------~~~I~eKIetIA~ 533 (564)
+++.+. +.++.+.||. +.++.+=|+....
T Consensus 170 l~~~~~--~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~ 205 (290)
T 3tva_A 170 FIEDVN--RPNLGINFDPANMILYGTGNPIEALRKVAR 205 (290)
T ss_dssp HHHHHC--CTTEEEEECHHHHHHTTCSCHHHHHHHHGG
T ss_pred HHHhcC--CCCEEEEeccHHHHHhCCCCHHHHHHHHHh
Confidence 777774 3457776652 2455555666554
No 131
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=74.40 E-value=2.4 Score=45.40 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=29.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEec--CCCCCCcccc
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGI 120 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lR--ePSlGP~FGi 120 (564)
.++.|.|++ .+-|+||||++..|+.+| ++.|+++.+.=- ++|+.-.||.
T Consensus 325 ~~~~~~~~~---~~~g~Gktt~a~~lA~~l-~~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 325 NEHGLIMLM---GKGGVGKTTMAAAIAVRL-ADMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp TSCEEEEEE---CSTTSSHHHHHHHHHHHH-HHTTCCEEEEESCCC---------
T ss_pred cCCeEEEEe---cCCCCChhhHHHHHHHHH-HHCCCcEEEEeCCCcccHhHHhcc
Confidence 345555543 466999999999999999 588999877422 3566666765
No 132
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.32 E-value=2 Score=39.01 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|+.|+++| |-|.||||++.-|++.|
T Consensus 23 ~~~~~i~l~G----~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTG----YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEc----CCCCCHHHHHHHHHHHc
Confidence 4588999998 46999999998888776
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.24 E-value=1.6 Score=38.47 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.|+.|+++|. -|.||||++--|++.|
T Consensus 3 ~g~~I~l~G~----~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGP----PGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 4778999984 7999999988888766
No 134
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=74.11 E-value=4 Score=35.75 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=36.4
Q ss_pred hcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCcc-ccCccchHHHHHHHHHHh
Q 008480 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHH-AHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~w-akGGeGa~eLA~~Vvea~ 507 (564)
..++|+|+++|+..-..+. ..+.+++++++.|+. +..+... ..|.+|-.++-+.+++.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 4689999999997653221 234567788888886 5444433 345577777666655443
No 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=74.07 E-value=2.5 Score=45.87 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+++++||| |.|.|||||...|...+ ...|++..+|
T Consensus 203 ~~~~~~I~G----~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTG----GPGTGKSTTTKAVADLA-ESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred hCCEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEe
Confidence 357999998 89999999999999999 4778877665
No 136
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.02 E-value=2 Score=39.00 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+.|.+|.++| |.|.||||++--|++.|. .-|..
T Consensus 23 ~~g~~i~l~G----~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTG----LSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp SCCEEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCce
Confidence 5699999998 579999999999999884 44654
No 137
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.97 E-value=1.6 Score=38.19 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=17.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+++|+++|+ -|.||||++--|++.|+
T Consensus 4 ~~~~I~l~G~----~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGP----FGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECC----C----CHHHHHHHHHST
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 4789999996 69999999888877663
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=73.54 E-value=11 Score=38.42 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=46.4
Q ss_pred hHHHHHHHHhhcCC-cEEEEecccCCCcHHHHHHHHH----HHHHc---CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRN----AAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~fGv-PvVVAIN~F~tDT~aEi~~v~~----~~~~~---G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
....|+..++.+|+ |+||++|+-.-.++++++...+ ++++. +++ ++.+. ++=|+|-.+|-+.+.+.+.
T Consensus 116 qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vS--A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 116 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP-IIPVS--ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECB--TTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE-EEEEE--CCCCcChHHHHHHHHHhCC
Confidence 56678888888887 8999999987666665544333 33222 444 44444 4567898999988887664
No 139
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.40 E-value=6.9 Score=34.60 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=42.0
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.++. .++|++|++|+..-+. +...+.+++++++.|+. +..+. ++-|+|-.+|-+.+.+.+.
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 34444444444 4899999999976421 11123456677778886 54443 5567888887777666553
No 140
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=72.97 E-value=4.9 Score=34.08 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=38.6
Q ss_pred hcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
..++|+++++|+..-..+.+ .+..++++++.++. +..+ =++-|+|-.+|-+.+.+.+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIET--SAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEE--BTTTTBSHHHHHHHHHHTC
T ss_pred CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 45899999999975432222 34456777878875 4433 3566788888888877655
No 141
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=72.92 E-value=4.4 Score=35.78 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=44.9
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.+++ .++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS--AKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB--TTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHHH
Confidence 34444444444 489999999997543211 234567788888875 44333 5668898888888887764
No 142
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=72.50 E-value=7.9 Score=34.30 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=40.3
Q ss_pred hcCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..++|++|++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 111 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS--ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3579999999997654322 234567788888886 44433 5668888888888777664
No 143
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.25 E-value=2.6 Score=37.50 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|++|.++| |-|.||||++--|+.-+
T Consensus 4 ~~g~~i~l~G----~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSG----PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEEC----STTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhh
Confidence 4588999998 47999999887775544
No 144
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=72.19 E-value=4.6 Score=36.74 Aligned_cols=69 Identities=9% Similarity=-0.069 Sum_probs=42.9
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++.+.++.++. .++|+||++|+..-..+.+ .+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 103 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS--ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--CC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 33444444444 4899999999975432211 23456788888875 54433 56678888888888887753
No 145
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.96 E-value=2.7 Score=36.82 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..|+.|+++| |-|.||||++--|++-+
T Consensus 6 ~~g~~i~l~G----~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMG----VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEEC----STTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEc----CCCCCHHHHHHHHHHhh
Confidence 4589999988 57999999887776554
No 146
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=71.93 E-value=12 Score=32.14 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHH----HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aE----i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.++.+++|+++++|+..--++++ .+.+++++...+...+..+ =++-|+|-.+|-+.+.+.+.
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT--SSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC--CTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE--ecCCCCCHHHHHHHHHHHhh
Confidence 3445566999999999976533333 3455666665443224433 36778998998888887764
No 147
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=71.84 E-value=19 Score=33.27 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=55.7
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCC---CcHHH-------HHHHHHHHHHcCCCeEEEcCccccC-ccch
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHG-GKGA 496 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~t---DT~aE-------i~~v~~~~~~~G~~~~~vs~~wakG-GeGa 496 (564)
+-+.-++....+++.|+..+.+|.+.||..--+.. +.++. +..+.+.+++.|+. +++-+++..+ --..
T Consensus 75 ~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~~ 153 (278)
T 1i60_A 75 DEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHPQCTVNT 153 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCTTBSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCccchhcC
Confidence 44556778889999999999999999987422221 22332 33444556677996 7777776442 1123
Q ss_pred HHHHHHHHHHhhcCCCCCcccCCC
Q 008480 497 VDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 497 ~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
.+-+..+++.+. +.++.++||.
T Consensus 154 ~~~~~~l~~~~~--~~~~g~~~D~ 175 (278)
T 1i60_A 154 FEQAYEIVNTVN--RDNVGLVLDS 175 (278)
T ss_dssp HHHHHHHHHHHC--CTTEEEEEEH
T ss_pred HHHHHHHHHHhC--CCCeeEEEEe
Confidence 344556666664 2356766653
No 148
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=71.83 E-value=8 Score=33.25 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=40.1
Q ss_pred hhcCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 447 KAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
...++|+|+++|+..-..+ -..+.+++++++.|+. +..+ =++=|+|-.+|-+.+++.+..
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLES--SAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEC--CTTSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEE--ecCCCCCHHHHHHHHHHHHHH
Confidence 3458999999999764222 1234567788888885 4433 356789999999888888754
No 149
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.74 E-value=17 Score=30.72 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=37.1
Q ss_pred cCCcEEEEecccCCCcHH---HHHHHHHHHHH-cCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKA---ELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a---Ei~~v~~~~~~-~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+..-..+. ..+.+++++++ .+.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS--AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 789999999997652211 23445666663 4554 44333 5668898888888877653
No 150
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=71.57 E-value=6.7 Score=32.88 Aligned_cols=67 Identities=6% Similarity=-0.107 Sum_probs=42.7
Q ss_pred hHHHHHHHHhh--cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKA--YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~--fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++...++.+.. .++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+.+.+
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTS--VKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--cCCCCCHHHHHHHHHHHH
Confidence 34444444444 489999999997643211 134456778888885 44333 456788888888877665
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=71.56 E-value=2.3 Score=37.54 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.++.|+++| |-|.||||++--|++.|
T Consensus 10 ~~~~i~i~G----~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTG----TPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEe----CCCCCHHHHHHHHHHHh
Confidence 477899998 57999999888887776
No 152
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=71.53 E-value=4.7 Score=33.78 Aligned_cols=68 Identities=7% Similarity=0.059 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++.+.++.+.+ -++|+|++.|+..-..+ .+.+.+++++++.++. +..+ =++-|+|-.+|-+.+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 95 ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMET--SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 344445555544 37999999999764322 1234567788888875 4433 3566888888888877655
No 153
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.47 E-value=16 Score=31.80 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
+.++.++++ ++|+|+++|+..-..+.+ .+...+++++.|...+..+. ++-|+|-.+|-+.++
T Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 111 EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS--ALTQKGLKTVFDEAI 188 (194)
T ss_dssp THHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee--CCCCCCHHHHHHHHH
Confidence 344555554 899999999976533221 24456777777872244333 455788888877777
Q ss_pred HHh
Q 008480 505 RAC 507 (564)
Q Consensus 505 ea~ 507 (564)
+.+
T Consensus 189 ~~i 191 (194)
T 2atx_A 189 IAI 191 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 154
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=71.37 E-value=9.7 Score=33.33 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=39.6
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+||++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 489999999998654322 245567788888885 44333 4567888888877777664
No 155
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=71.18 E-value=11 Score=35.91 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=54.3
Q ss_pred HHhhcC-CcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCC--CCcccCCC
Q 008480 445 NTKAYG-ANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLKFLYPL 520 (564)
Q Consensus 445 Ni~~fG-vPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~--~fk~LYd~ 520 (564)
.+..++ +|+|+++|+..-....++. .+.++++..|++ ++.+ =+.-|+|-.+|-+.+.+.+.+... .+..-|.
T Consensus 103 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~--Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~- 178 (271)
T 3k53_A 103 ELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPT--NAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD- 178 (271)
T ss_dssp HHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEEC--BGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-
T ss_pred HHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEE--EeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-
Confidence 344567 9999999997521111110 145566778887 5443 356678999999999988864322 2333342
Q ss_pred CCCHHHHHHHHHh-HhCC
Q 008480 521 DVSIKEKIDTIAR-SYGA 537 (564)
Q Consensus 521 ~~~I~eKIetIA~-IYGA 537 (564)
..+++-++.|.. +-+.
T Consensus 179 -~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 179 -EDIEREIKHISELLRGT 195 (271)
T ss_dssp -HHHHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHHHHHHhhc
Confidence 347777777776 6443
No 156
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=71.14 E-value=8 Score=32.64 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=45.6
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 436 CVNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.++...++.+.+ .++|+|+++|+-.-.. +-..+...+++++.++. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIET--SAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEe--cCccCCCHHHHHHHHHHHHH
Confidence 3344444455444 3899999999976422 12234456788888885 4433 35678999888888887764
No 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=71.11 E-value=7.7 Score=34.07 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=42.7
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++.+.++.+++ .++|+++++|+..-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+
T Consensus 111 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 111 HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETS--AKTACNVEEAFINTAKEI 182 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 44444444444 4899999999976533211 24456778888885 44433 456788888777766655
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.47 E-value=3.5 Score=36.43 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|++|.+|+. -|.||||++--|++-|. ..|...+
T Consensus 3 ~~g~~i~l~G~----~GsGKST~~~~L~~~l~-~~g~~~i 37 (179)
T 2pez_A 3 MRGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCY 37 (179)
T ss_dssp -CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHHh-hCCCcEE
Confidence 45899999985 69999999999988873 3465544
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=70.22 E-value=14 Score=38.95 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCcEEEEecccCCCcHHHHHH----HHHHHHHc----CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 440 ARHIANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~----v~~~~~~~----G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..|+..++.+|+|.||++|+-.--++++++. +++++++. +++ ++.+..+ =|+|-.+|-+.+.+.+.
T Consensus 115 ~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~--~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 115 GEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAK--TGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTT--TCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECc--CCCCHHHHHHHHHHhhc
Confidence 4667777889999999999987655655544 44455544 344 4554443 47888889888888664
No 160
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=70.14 E-value=6.7 Score=33.05 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred hcCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 448 AYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
..++|+++++|+..-..+ ...+.+++++++.|+. +..+ =++=|+|-.+|-+.+++.+
T Consensus 109 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHT--SAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEE--BTTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 358999999999754322 1234567788888875 4332 2556788888888877765
No 161
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=69.99 E-value=6.7 Score=34.60 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=43.6
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++...++.++. .++|+|+++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEAS--AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 44444444444 589999999997643321 234567778888885 44443 4567888887777766553
No 162
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.84 E-value=1.8 Score=42.02 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRe 111 (564)
.|+.|++++ |.|.||||+++-|++.....+.-.++..-|+
T Consensus 33 ~g~~ilI~G----psGsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITG----DSGVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEEC----CCTTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 588899998 6799999999999887755556666666665
No 163
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.66 E-value=4.1 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|++|+++|+ -|.||||++--|++.|+...|.+.+
T Consensus 23 ~~~~~i~~~G~----~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 23 QRGLTIWLTGL----SASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SSCEEEEEECS----TTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHhccccCCcEE
Confidence 56999999986 7999999999999988424465443
No 164
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=69.62 E-value=24 Score=32.89 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccCC--CcHHHHH----HHHHHHHH-cCCCeEEEcCccccCcc-
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKAELN----AVRNAAMA-AGAFDAVVCSHHAHGGK- 494 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~t--DT~aEi~----~v~~~~~~-~G~~~~~vs~~wakGGe- 494 (564)
+..++-+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++ .+++.+.+ .|+. +++-+++..+..
T Consensus 76 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~~~~~ 154 (285)
T 1qtw_A 76 LGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQGSNL 154 (285)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCCTTBC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCCCCcc
Confidence 3456777788899999999999999999998753 22222 3344443 34444443 6885 788888644422
Q ss_pred -chHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 495 -GAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 495 -Ga~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
...+-+.++++.+. .+.++.+++|.
T Consensus 155 ~~~~~~~~~l~~~v~-~~~~~g~~~D~ 180 (285)
T 1qtw_A 155 GFKFEHLAAIIDGVE-DKSRVGVCIDT 180 (285)
T ss_dssp CSSHHHHHHHHHHCS-CGGGEEEEEEH
T ss_pred cCCHHHHHHHHHhhc-CccceEEEEEh
Confidence 13444556666662 12356666653
No 165
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.62 E-value=2.5 Score=36.91 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+++|+++|. -|.||||++--|++.|
T Consensus 3 ~~~I~l~G~----~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGG----PGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 578999885 6999999988887766
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.48 E-value=4.2 Score=36.46 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+.++-|+++| |.|.||||++..+++.+. .-|.+
T Consensus 50 ~~~~~~ll~G----~~G~GKT~la~~l~~~~~-~~~~~ 82 (242)
T 3bos_A 50 DGVQAIYLWG----PVKSGRTHLIHAACARAN-ELERR 82 (242)
T ss_dssp CSCSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 4577888887 679999999999999995 44554
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=69.18 E-value=3 Score=36.87 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+++|+++|. -|.||||++--|++.|
T Consensus 11 ~~~~I~l~G~----~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGG----PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3679999994 7999999988888777
No 168
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.16 E-value=3.2 Score=40.71 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..+++|+++| |.|.||||++--|.+.+
T Consensus 31 ~~~~livl~G----~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGG----QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEEC----CTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4588999998 67999999998887766
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=69.09 E-value=3 Score=37.77 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|++|.++| |-|.||||++--|+.-+
T Consensus 27 ~~g~~i~l~G----~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMG----VSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhh
Confidence 5699999998 57999999888776655
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.99 E-value=2.4 Score=36.88 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=19.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+.|.+|| |.|.||||++--|+..|
T Consensus 4 ~~~i~l~G----~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVG----PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEEC----CTTSCHHHHHHHHHHHT
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 56788888 57999999887776655
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=68.77 E-value=21 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=45.5
Q ss_pred CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
+.|+++++|+-.-....+++.+.+++++.+.+ +..+. ++=|+|-.+|-+.+.+.+..
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~iS--A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN-PIKIS--ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC-CEECB--TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC-eEEEe--CCCCcCHHHHHHHHHHHHHH
Confidence 89999999998887788888888888888876 43332 56689999999988888753
No 172
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=68.47 E-value=11 Score=33.77 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 437 VNLARHIANTKA----YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 437 ~NL~kHIeNi~~----fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++...++.+.. .++|+||++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 124 ~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 124 LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS--AATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB--TTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 355556666654 5799999999976433222 35567888888986 44333 4567888888777776653
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=68.29 E-value=3 Score=36.85 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+.|+.++++| |-|.||||++..++..+...-|..
T Consensus 36 ~~g~~~~l~G----~~G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 36 EEGKGLTFVG----SPGVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp GGCCEEEECC----SSSSSHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHcCCe
Confidence 3488899988 789999999999988883233543
No 174
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=68.26 E-value=22 Score=33.39 Aligned_cols=107 Identities=11% Similarity=0.111 Sum_probs=67.0
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-c-----ccC--CCcHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-N-----MFA--TDSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N-----~F~--tDT~aE-------i~~v~~~~~~~G~~~~~vs~~ 488 (564)
+..+|.+.-++.+..+++.|+..+.+|.+.|+.. . .|+ .+.++. ++.+.+.|++.|+. +++-++
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~ 153 (294)
T 3vni_A 75 LSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVL 153 (294)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4456777788899999999999999999999852 2 233 233333 34455667788996 777666
Q ss_pred cc-cCc-cchHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 489 HA-HGG-KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 489 wa-kGG-eGa~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
.. .+- -...+-+..+++.+. +.++.++||. ..++.+=|+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 204 (294)
T 3vni_A 154 NRFENYLINTAQEGVDFVKQVD--HNNVKVMLDTFHMNIEEDSIGGAIRTAGS 204 (294)
T ss_dssp CTTTCSSCCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred CcccCcccCCHHHHHHHHHHcC--CCCEEEEEEhhhhHHcCCCHHHHHHHhhh
Confidence 32 221 123444556666664 2457777764 2355555666554
No 175
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=68.14 E-value=19 Score=32.17 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=43.4
Q ss_pred HHHHHhhcCCcEEEEecccCCCcHHHHH----HHHHHHHHc-----CCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 442 HIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~aEi~----~v~~~~~~~-----G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++.+++.++|+|+++|+-.-.++.+++ .+++.+.+. +.. +-+-..=++-|+|-.+|-+.+.+.+..
T Consensus 136 ~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 136 MIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK-LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC-EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC-CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 3455667999999999998766666643 333444432 111 222233467799999999999888753
No 176
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.70 E-value=3.9 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|++|.++| |-|.||||+.--|+.-+
T Consensus 5 ~~g~ii~l~G----p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISA----PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhC
Confidence 3588998888 67999999887765433
No 177
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=67.64 E-value=14 Score=31.00 Aligned_cols=57 Identities=21% Similarity=0.094 Sum_probs=38.5
Q ss_pred hcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.-++|++++.|+..-..+.+ .+..++++++.+.. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS--AKNAININELFIEISRRI 167 (170)
T ss_dssp CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHC
T ss_pred CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHH
Confidence 34789999999976533222 24456778888875 44333 456788888888887765
No 178
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=67.64 E-value=5.2 Score=36.44 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|.+|.++| |-|.||||++--|+..|.
T Consensus 20 ~~~~~i~i~G----~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDG----LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 4588999998 679999999998888773
No 179
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=67.35 E-value=3.9 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..++|+++|. -|.||||++--|++.|
T Consensus 5 ~~~~I~l~G~----~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGG----PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3578999985 6999999988887766
No 180
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.33 E-value=1.9 Score=44.59 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+|+|+|+| |.|.||||+++-|++.|+
T Consensus 38 ~~~~lIvI~G----PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMG----ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEEC----STTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4578999988 469999999999988774
No 181
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=67.24 E-value=2.3 Score=44.45 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
..|++|.|-|+ -|.||||.+--|++.|. ..| ++..|||
T Consensus 47 ~~~~fIt~EG~----dGsGKTT~~~~Lae~L~-~~g---vv~trEP 84 (376)
T 1of1_A 47 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEP 84 (376)
T ss_dssp CEEEEEEECSS----TTSSHHHHHHHHHC-----CC---EEEECCC
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCC
Confidence 46888999885 79999999999988884 445 8899999
No 182
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=66.99 E-value=11 Score=33.14 Aligned_cols=57 Identities=14% Similarity=-0.060 Sum_probs=40.0
Q ss_pred cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
-++|+|+++|+..-..+ ...+..++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENISVRQAFERLVDAIC 185 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 58999999998764222 2234456778888885 44333 6778999998888887764
No 183
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=66.86 E-value=19 Score=31.52 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=37.7
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHH-HcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~-~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+|+++|+..-.. +...+.++++++ ..++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999975421 122344566776 45665 44333 6678998888888777664
No 184
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=66.72 E-value=8.4 Score=34.03 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.....++|++|++|+..-..+.+ .+.+++++++. +.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3333445899999999976433222 23456777764 554 44333 6778998888888877653
No 185
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=66.67 E-value=3.1 Score=37.32 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+..++|+++| |-|.||||.+--|++.+
T Consensus 13 ~~~~~I~l~G----~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLG----GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEEC----STTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHc
Confidence 3467899998 47999999888887665
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=66.56 E-value=6 Score=39.55 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
.+|+.|.+++ |-|+||||+..-|+..+ ...|.++.+.=..|.
T Consensus 54 ~~~~~i~i~G----~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTG----TPGAGKSTFLEAFGMLL-IREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCC
T ss_pred CCCEEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEEeecCC
Confidence 5677888877 78999999999999998 467888776666664
No 187
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=66.48 E-value=3.3 Score=37.09 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
++|+.|++||. -|.||||++--|++.
T Consensus 8 ~~~~~I~l~G~----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS----TTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHh
Confidence 56889999995 799999998888776
No 188
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.47 E-value=3.6 Score=37.03 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..++|+++|. -|.||||++--|++.|
T Consensus 17 ~~~~I~l~G~----~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGV----SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999984 6999999888777666
No 189
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=66.47 E-value=10 Score=33.12 Aligned_cols=68 Identities=13% Similarity=-0.043 Sum_probs=44.1
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.+.. .++|++|++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 115 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 115 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS--ALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 44444555544 489999999997543221 234567788888885 44433 4668888888877776653
No 190
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=66.03 E-value=2.3 Score=43.81 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhH-HHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTT-VGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTtt-IGL~qaL~~~lgk~~~~~lReP 112 (564)
++|++|.+-|+ -|.||||++ -=|.+.|. .-|. ++..|||
T Consensus 10 ~~~~~I~iEG~----~GaGKTT~~~~~L~~~l~-~~g~--vv~trEP 49 (341)
T 1osn_A 10 MGVLRIYLDGA----YGIGKTTAAEEFLHHFAI-TPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEEEES----SSSCTTHHHHHHHHTTTT-SGGG--EEEECCC
T ss_pred CCceEEEEeCC----CCCCHHHHHHHHHHHHHh-hCCc--EEEEeCC
Confidence 56899999996 799999998 88887774 4452 8999998
No 191
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=66.01 E-value=24 Score=31.33 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
+.++.++++ ++|+|+++|+..-..+.+ .+..++++++.|...+..+. ++=|+|-.+|-+.++
T Consensus 118 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 118 KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS--AKTKEGVREVFEMAT 195 (201)
T ss_dssp THHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee--CCCCCCHHHHHHHHH
Confidence 334445554 899999999975433221 12345677777773244333 455788888887777
Q ss_pred HHh
Q 008480 505 RAC 507 (564)
Q Consensus 505 ea~ 507 (564)
+.+
T Consensus 196 ~~~ 198 (201)
T 2gco_A 196 RAG 198 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 192
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=65.92 E-value=5.4 Score=37.29 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=56.3
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCcc-chHHHHHHHHHHhhcCCCCC
Q 008480 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACENVTQPL 514 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGe-Ga~eLA~~Vvea~e~~~~~f 514 (564)
...+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-+|+-++.- ...+ .+.+.++..+.++
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~~~~---~~~~ll~~~~p~v 158 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHGPDIKTYPDAT---DVWVHTKDLDPRI 158 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCCTTCSSSCSHH---HHHHHHTTSCTTE
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCCCcccccCCHH---HHHHHHHhCCCCc
Confidence 3478899999999999999963 33 46788888999999996 888888532221 1222 3333333222357
Q ss_pred cccCCC------CCCHHHHHHHHHh
Q 008480 515 KFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 515 k~LYd~------~~~I~eKIetIA~ 533 (564)
.+.||. ..++.+=|+....
T Consensus 159 g~~~D~~h~~~~g~d~~~~l~~~~~ 183 (257)
T 3lmz_A 159 GMCLDVGHDLRNGCDPVADLKKYHT 183 (257)
T ss_dssp EEEEEHHHHHHTTCCHHHHHHHHGG
T ss_pred cEEEchhhHHHcCCCHHHHHHHhhc
Confidence 776653 2345555555544
No 193
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.74 E-value=3.5 Score=39.15 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+.+++|+++| |-|.||||++--|++.|
T Consensus 29 ~~~~~~i~l~G----~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGG----QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEES----CGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 34578999998 47999999988887766
No 194
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.57 E-value=3.4 Score=36.47 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+.|++|.++| |-|.||||+.--|+.
T Consensus 7 ~~g~~i~l~G----~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSG----HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEE----CTTSCHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHh
Confidence 4689999998 679999997666543
No 195
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=65.51 E-value=14 Score=31.59 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=37.6
Q ss_pred CCcEEEEecccCCCcHHH------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 450 GANVVVAVNMFATDSKAE------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aE------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++|+++++|+..-..+.+ .+...+++++.|...+..+ =++-|+|-.+|-+.+++.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC--SSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC--CTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE--ECCCCCCHHHHHHHHHHHH
Confidence 899999999975322222 2445677787886324433 3566888888888887765
No 196
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.48 E-value=3.3 Score=36.53 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=20.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|++|| |.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVG----LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEEC----STTSSHHHHHHHHHHHHT
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4577877 579999999988887774
No 197
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=65.48 E-value=15 Score=36.73 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecccC
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVAVNMFA 461 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVAIN~F~ 461 (564)
.++.+.++++.|++++++|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 4567889999999999999998765 5443
No 198
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=65.18 E-value=9.7 Score=32.29 Aligned_cols=59 Identities=14% Similarity=-0.049 Sum_probs=40.5
Q ss_pred hhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 447 ~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
...++|+++++|+..-..+.+ .+..+++++..++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 111 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEAS--AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHHH
Confidence 346899999999976433222 23456777888875 44333 5668898888888887765
No 199
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=65.15 E-value=19 Score=36.50 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=49.3
Q ss_pred hHHHHHHHHhhc-----CCcEEEEecccCCCcHHHHHHHHHHHHHcC--CCeEEEcCccccCccchHHHHHHHHHHhhcC
Q 008480 438 NLARHIANTKAY-----GANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (564)
Q Consensus 438 NL~kHIeNi~~f-----GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G--~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~ 510 (564)
++....+.+++| ++|++|++|+-.-..++| .+.+++++.+ .. +. ..=++=|+|-.+|-+.+.+.+.+.
T Consensus 257 ~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~-v~--~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 257 DYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYP-VF--PISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp HHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH--HHHHHHHHCCSCCC-BC--CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH--HHHHHHHHhhcCCC-EE--EEECCCCcCHHHHHHHHHHHHhhC
Confidence 333444455553 799999999976544432 3455555555 32 22 233566899999999999998642
Q ss_pred CCCCcccCCCCC
Q 008480 511 TQPLKFLYPLDV 522 (564)
Q Consensus 511 ~~~fk~LYd~~~ 522 (564)
.-.++|+.++
T Consensus 332 --~~~~~y~~e~ 341 (342)
T 1lnz_A 332 --PEFPLYDEEE 341 (342)
T ss_dssp --CCCCSSCSCC
T ss_pred --ccccCCCccc
Confidence 3346887653
No 200
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=65.12 E-value=13 Score=32.04 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=46.5
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 437 VNLARHIANTKA----YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 437 ~NL~kHIeNi~~----fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++.+.++.+.+ .++|+++++|+..-.. +...+...+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 104 ~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 104 VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEAS--AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHHh
Confidence 345555666655 3799999999976422 11234456788888875 54443 45588988888888887753
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=65.07 E-value=6.7 Score=39.36 Aligned_cols=42 Identities=29% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
++...|.+|+ +-|.||||++.-|+.+|. ..|+++.+.==.|+
T Consensus 77 ~~~~~I~i~G----~~G~GKSTl~~~L~~~l~-~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITG----VPGVGKSTAIEALGMHLI-ERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEEC----CTTSSHHHHHHHHHHHHH-TTTCCEEEEEEC--
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCceEEEecCCC
Confidence 3445677776 379999999999999994 77998776655554
No 202
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=65.02 E-value=26 Score=31.75 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecccC--CCcHHHHHHHHHHHHHcCC-CeEEEcCccccCc
Q 008480 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGG 493 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~--tDT~aEi~~v~~~~~~~G~-~~~~vs~~wakGG 493 (564)
...+-|+.++++|+++.+-..-.+ .|+.+|++.+.+++++.|. ..+.+......|+
T Consensus 148 ~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGK 206 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSH
T ss_pred HHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccCh
Confidence 444556666778888766544444 4889999999999999995 3344444444443
No 203
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=64.94 E-value=12 Score=33.26 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcHHH----------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSKAE----------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~aE----------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..++.++.+ ++|+|+++|+..-..+.+ .+.+.+++++.|...+..+. ++=|+|-.+|-+.+++.+.
T Consensus 102 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 102 KWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS--SKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp THHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc--CCCCCCHHHHHHHHHHHHh
Confidence 344555554 899999999975322211 34456777888863344433 4568898998888888775
Q ss_pred c
Q 008480 509 N 509 (564)
Q Consensus 509 ~ 509 (564)
+
T Consensus 180 ~ 180 (212)
T 2j0v_A 180 Q 180 (212)
T ss_dssp C
T ss_pred h
Confidence 4
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.78 E-value=5.1 Score=36.55 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|.+|.+.| |-|.||||++--|+.-+.
T Consensus 20 ~~g~~v~I~G----~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSG----APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEEC----CTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 5688888887 679999999988877773
No 205
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=64.62 E-value=31 Score=32.12 Aligned_cols=93 Identities=6% Similarity=0.112 Sum_probs=58.0
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccCC-CcHHHH----HHHHHHHHH-cCCCeEEEcCccccCcc--c
Q 008480 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT-DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAHGGK--G 495 (564)
Q Consensus 425 ~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~t-DT~aEi----~~v~~~~~~-~G~~~~~vs~~wakGGe--G 495 (564)
..+|-+..++....+++.|+..+.+|.+.||.- ..+.. ++++.+ +.+++.|++ .|+. +++-+++..+.. .
T Consensus 77 ~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~~ 155 (287)
T 2x7v_A 77 ASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQKGGNIGY 155 (287)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCCTTEECS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCCCCccCC
Confidence 345667778889999999999999999998752 22333 334443 344555544 5875 778787644331 2
Q ss_pred hHHHHHHHHHHhhcCCCCCcccCC
Q 008480 496 AVDLGIAVQRACENVTQPLKFLYP 519 (564)
Q Consensus 496 a~eLA~~Vvea~e~~~~~fk~LYd 519 (564)
..+-+..+++.+.. +.++.++||
T Consensus 156 ~~~~~~~l~~~~~~-~~~vg~~~D 178 (287)
T 2x7v_A 156 KLEQLKKIRDLVDQ-RDRVAITYD 178 (287)
T ss_dssp SHHHHHHHHHHCSC-GGGEEEEEE
T ss_pred CHHHHHHHHHhcCC-CCCeEEEEE
Confidence 34445566666642 134666554
No 206
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=64.37 E-value=8.2 Score=34.42 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=38.6
Q ss_pred hcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..++|+|+++|+..-..+.+ .+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 128 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 35899999999976533222 24456788888885 44333 4567888887777766553
No 207
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=64.31 E-value=17 Score=33.62 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=52.8
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecccCC--C-cH-------HHHHHHHHHHHHcCCCeEEEcCc-----cccCc--
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--D-SK-------AELNAVRNAAMAAGAFDAVVCSH-----HAHGG-- 493 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~t--D-T~-------aEi~~v~~~~~~~G~~~~~vs~~-----wakGG-- 493 (564)
..++.+..+++.|+..+.+|.+.|+. ..++. + ++ +.+..+.+.|++.|+. +++-++ |...+
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~~~~ 155 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYVGPHHLRHRRYPF 155 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCGGGCCSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEeccccccccccccc
Confidence 46778889999999999999999884 23332 2 22 2234445556788996 666665 21111
Q ss_pred cchHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 494 KGAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 494 eGa~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
-...+-+.++++.+. +.++.++||.
T Consensus 156 ~~~~~~~~~l~~~v~--~~~vg~~~D~ 180 (281)
T 3u0h_A 156 VQSLADLKTFWEAIG--APNVGALVDS 180 (281)
T ss_dssp CCSHHHHHHHHHHHC--CTTEEEEEEH
T ss_pred cCCHHHHHHHHHHcC--CCCeeEEeeh
Confidence 123444556777664 2357776653
No 208
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=64.25 E-value=16 Score=30.95 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=42.9
Q ss_pred HHHHHHHHhhc--CCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 439 LARHIANTKAY--GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 439 L~kHIeNi~~f--GvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.+.++.+.+. ++|+||++|+..-..+ .+.+..++++...|+. +..+. ++-|+|-.+|-+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 100 VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETS--AKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 33334444432 6999999999754322 1234557788888886 44333 5668888888888777664
No 209
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=64.21 E-value=7.4 Score=35.33 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=25.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
+.|.+++++| |.|.||||++.-++..+. ..|.++
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~~~~~~~-~~~~~v 54 (247)
T 2dr3_A 21 PERNVVLLSG----GPGTGKTIFSQQFLWNGL-KMGEPG 54 (247)
T ss_dssp ETTCEEEEEE----CTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeE
Confidence 5699999998 579999999988877663 434443
No 210
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=64.18 E-value=5.4 Score=40.41 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=76.0
Q ss_pred HHHHhhcCCCCeEEeecccccccccccccccccccCCCCcce---EEEEeehhHHHhcCCCCCccCCCCCcccccc----
Q 008480 354 KIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQC---AVIVATIRALKMHGGGPQVVAGKPLDHAYLN---- 426 (564)
Q Consensus 354 k~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a---vVlVaTvRALK~HGG~~~~~~g~PLp~~l~~---- 426 (564)
++.-|..--.||+||-.-|..|. .++|++ +||..|+.--. +.-+.+.+.+++-.. ..|..+|+++.+
T Consensus 168 ~Lk~KvdAGAdf~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~----~~Gv~iP~~l~~~l~~ 241 (304)
T 3fst_A 168 NLKRKVDAGANRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLAD----MTNVRIPAWMAQMFDG 241 (304)
T ss_dssp HHHHHHHHTCCEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHHH----HHTCCCCHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHHH----cCCCcCCHHHHHHHHh
Confidence 44444421239999999998776 667777 89999986221 223566777765522 233445655433
Q ss_pred --ccHHH-HHHHHhhHHHHHHHHhhcCCcEE--EEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 427 --ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 427 --eNl~a-Le~G~~NL~kHIeNi~~fGvPvV--VAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
.|.++ .+.|+.--...++.+...|+|-| ..+|+. +.+.+.|+.+|..
T Consensus 242 ~~dd~~~~~~~Gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~lg~~ 293 (304)
T 3fst_A 242 LDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRA--------EMSYAICHTLGVR 293 (304)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTCC--------HHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHHhCCC
Confidence 24666 67899888888999988888876 345554 5677888888885
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=64.12 E-value=16 Score=35.92 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHH---HHHHHHHHHHcCCCeEEEcCccccCccchHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 500 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aE---i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA 500 (564)
++.+-+..++..++|+|+++|+-.-.++.+ ++.+.+++++.|+. +.... ++-|+|-.+|-
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~S--A~~g~gi~~L~ 160 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKVS--AKTGEGIDELV 160 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHH
Confidence 355556666678999999999987555542 66677778888885 43322 45556655544
No 212
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=63.98 E-value=13 Score=37.98 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhcCCcE-EEEec-ccCCCcHHHHH----HHHHHHHHcCC--CeEEE--cCccc-cCccchHHHHHHHHHH
Q 008480 438 NLARHIANTKAYGANV-VVAVN-MFATDSKAELN----AVRNAAMAAGA--FDAVV--CSHHA-HGGKGAVDLGIAVQRA 506 (564)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAIN-~F~tDT~aEi~----~v~~~~~~~G~--~~~~v--s~~wa-kGGeGa~eLA~~Vvea 506 (564)
....|+..++.+|+|. ||++| +-.- .++.++ .+++++++.+. ..++. +..+. .=|+|-.+|-+.+.+.
T Consensus 99 qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 99 HTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 4567888889999999 99999 8877 555444 34455544442 12444 22221 0178888888887776
Q ss_pred hh
Q 008480 507 CE 508 (564)
Q Consensus 507 ~e 508 (564)
..
T Consensus 178 ~~ 179 (370)
T 2elf_A 178 AE 179 (370)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 213
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=63.90 E-value=2.4 Score=43.38 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
+.|++|.|-|+ -|.||||.+--|++.|. ..| +...|||.
T Consensus 2 ~~~~fI~~EG~----dGsGKTT~~~~La~~L~-~~g---v~~trEPg 40 (331)
T 1e2k_A 2 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEPM 40 (331)
T ss_dssp CEEEEEEECSC----TTSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CccEEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 34778888875 79999999988888884 445 88999995
No 214
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=63.88 E-value=10 Score=33.35 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=37.5
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCcc-chHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGe-Ga~eLA~~Vvea~e 508 (564)
.++|+|++.|+..-..+. ..+.+++++++.++. +..+. ++-|+ |-.++-+.+++.+.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECS--ACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECC--TTTCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEEC--CCcCCcCHHHHHHHHHHHHH
Confidence 589999999997543321 124456777777875 44443 45567 77777777776654
No 215
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=63.82 E-value=9.2 Score=32.56 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=37.5
Q ss_pred CCc-EEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 450 GAN-VVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 450 GvP-vVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.| +|++.|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVS--AKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 677 789999875432211 24456778888885 44433 4567898888888887764
No 216
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=63.75 E-value=11 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=38.2
Q ss_pred hcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..++|+|++.|+..-..+.+ .+.++++++..++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 129 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS--AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 45899999999965432211 23446677778886 44433 5667888888777776653
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=63.19 E-value=7.4 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.+++++| |-|.||||+..-|+..+
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTG----EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5689999987 57999999999998766
No 218
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=62.76 E-value=12 Score=32.64 Aligned_cols=58 Identities=9% Similarity=-0.061 Sum_probs=40.0
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+|+++|+..-.. +...+...+++++.++. +..+ =++-|+|-.+|-+.+++.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMET--SAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHCSS
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEE--ecCCCCCHHHHHHHHHHHHhh
Confidence 3799999999976432 11233455677777875 4433 356689999999999988753
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=62.71 E-value=4.3 Score=37.18 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+++|+++|. -|.||||.+--|++.|+
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGA----PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEES----TTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 34678999984 79999999999988874
No 220
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.67 E-value=3.7 Score=39.26 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=19.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
++|+|+| |.|.||||++.-|++.+
T Consensus 2 ~li~I~G----~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYG----PTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred eEEEEEC----CCCcCHHHHHHHHHhcC
Confidence 4677777 46999999998887766
No 221
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.45 E-value=4.1 Score=39.00 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+|.+++.| +-|-||||.++||+.-.. ..|+++.+.
T Consensus 27 ~~g~i~v~t-----G~GkGKTTaA~GlalRA~-g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFT-----GNGKGKTTAAFGTAARAV-GHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEE-----SSSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCceEEEEC-----CCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 568777775 579999999999998773 679987654
No 222
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.28 E-value=4.5 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|+.|+++|+ -|.||||.+--|++.|+
T Consensus 3 ~~~~I~l~G~----~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGP----PGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 4788999985 59999999988887773
No 223
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=62.25 E-value=4.6 Score=35.65 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|+++|+ -|.||||++--|++.|+
T Consensus 2 ~I~i~G~----~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT----VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC----CccCHHHHHHHHHHhcC
Confidence 5677775 69999999988888774
No 224
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=61.95 E-value=15 Score=32.41 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHhhcCCcEEEEecccCCCcHH--------HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 444 ANTKAYGANVVVAVNMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~a--------Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.....++|+||++|+..-..+. ..+..++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 127 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETS--AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHT
T ss_pred HHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEee--CCCCCCHHHHHHHHHHHHH
Confidence 33333589999999987542111 123456778888885 44433 4567888888888877664
No 225
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=61.65 E-value=5.8 Score=35.65 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..+.+|+++|. -|.||||++--|++.|+
T Consensus 18 ~~~~~I~l~G~----~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGP----PGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECC----TTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 45779999985 69999999888877763
No 226
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=61.44 E-value=14 Score=32.95 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=42.5
Q ss_pred HHHHHhhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 442 HIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.+......++|+|+++|+..-..+.+ .+.+.++++..++. +..+ =++-|+|-.+|-+.+++.+.+
T Consensus 109 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 109 EFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEI--SAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEE--BTTTTBTTTHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEE--ecCCCCCHHHHHHHHHHHHhc
Confidence 33444445899999999987554333 24456677777775 4333 356788999998888888764
No 227
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=61.38 E-value=25 Score=34.47 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcC--CCeEEEcCccccCccchHHHHH
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGI 501 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G--~~~~~vs~~wakGGeGa~eLA~ 501 (564)
++.+.+..++..++|+|+++|+-.-..+.+++.+.++++..+ .. +..+. |+=|+|-.+|-+
T Consensus 103 ~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~S--Aktg~gv~~lf~ 165 (301)
T 1u0l_A 103 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKTS--AKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEEE--CCCCcCHHHHHH
Confidence 455556566668999999999987656666655677777665 54 43333 566777655543
No 228
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=61.29 E-value=29 Score=30.57 Aligned_cols=70 Identities=9% Similarity=-0.101 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecccCC----CcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 437 VNLARHIANTKA----YGANVVVAVNMFAT----DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 437 ~NL~kHIeNi~~----fGvPvVVAIN~F~t----DT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++..-++.++. .++|+|++.|+..- +..-..+.+++++++.|...+.. .=++-|+|-.+|-+.+++.+.
T Consensus 102 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e--~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 102 QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE--TCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE--EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE--ecCCCCCCHHHHHHHHHHHHH
Confidence 344444555544 47999999999653 11122344577888887322433 335778898888888777654
No 229
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=61.15 E-value=28 Score=32.46 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cc--cC--CCcHHHHH-------HHHHHHHHcCCCeEEEcCcc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM--FA--TDSKAELN-------AVRNAAMAAGAFDAVVCSHH 489 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-----N~--F~--tDT~aEi~-------~v~~~~~~~G~~~~~vs~~w 489 (564)
.+|-+.-++.+..+++.|+..+.+|.+.||.. .. |. .++++.++ .+.+.+++.|+. +++-++.
T Consensus 77 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 155 (290)
T 2qul_A 77 SPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALEVVN 155 (290)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCc
Confidence 45566678888999999999999999999852 22 32 24454443 344556678996 7776664
Q ss_pred cc-Cc-cchHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 490 AH-GG-KGAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 490 ak-GG-eGa~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
.. +. -...+-+.++++.+. +.++.+++|.
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~--~~~~g~~~D~ 186 (290)
T 2qul_A 156 RFEQWLCNDAKEAIAFADAVD--SPACKVQLDT 186 (290)
T ss_dssp TTTCSSCCSHHHHHHHHHHHC--CTTEEEEEEH
T ss_pred cccccccCCHHHHHHHHHHcC--CCCEEEEEEc
Confidence 21 11 122344455666664 2457777654
No 230
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=61.09 E-value=21 Score=31.75 Aligned_cols=56 Identities=5% Similarity=0.003 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCC--CcHHHHHHHHHHHHHc-CC-CeEEEcCccccCc
Q 008480 438 NLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAA-GA-FDAVVCSHHAHGG 493 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~t--DT~aEi~~v~~~~~~~-G~-~~~~vs~~wakGG 493 (564)
...+-|+.+++.|+++.|...-.+. |+.+|++.+.+++++. |+ ..+.+.....-|.
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~ 139 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGK 139 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCH
Confidence 4444555566678888777655553 8899999999999998 97 5455544444443
No 231
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=61.06 E-value=29 Score=31.22 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=42.5
Q ss_pred HHHHhhc--CCcEEEEecccCCCcHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 443 IANTKAY--GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT~aEi--------------~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.++.+ ++|+|+++|+-.-..+.+. +..++++++.|...+..+ =++-|+|-.+|-+.+++.
T Consensus 129 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC--SARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC--BTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe--cCCCCCCHHHHHHHHHHH
Confidence 4444443 8999999999765333221 234677888887324433 356789989988888877
Q ss_pred hhc
Q 008480 507 CEN 509 (564)
Q Consensus 507 ~e~ 509 (564)
+.+
T Consensus 207 ~~~ 209 (214)
T 2j1l_A 207 ALS 209 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 232
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=60.84 E-value=7.5 Score=32.60 Aligned_cols=57 Identities=9% Similarity=-0.060 Sum_probs=38.2
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
-++|+++++|+..-..+.+ .+...++++..++. +..+ =++-|+|-.+|-+.+++.++
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMET--SAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEe--cCCCCcCHHHHHHHHHHHHh
Confidence 3799999999975432222 23445667777875 4433 35668999999988888764
No 233
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=60.67 E-value=23 Score=42.61 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=59.6
Q ss_pred ccccccccccccCCCC-cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 008480 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (564)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvP-vV 454 (564)
|-|+|. +-+..++. .|++|+|.-+.- |.. + ....|+..++..|+| +|
T Consensus 368 GHedF~--~~mi~gas~AD~aILVVDAtd-----Gv~--------------~----------QTrEhL~ll~~lgIP~II 416 (1289)
T 3avx_A 368 GHADYV--KNMITGAAQMDGAILVVAATD-----GPM--------------P----------QTREHILLGRQVGVPYII 416 (1289)
T ss_dssp CHHHHH--HHHHHTSCCCSEEEEEEETTT-----CSC--------------T----------THHHHHHHHHHHTCSCEE
T ss_pred ChHHHH--HHHHHHHhhCCEEEEEEcCCc-----cCc--------------H----------HHHHHHHHHHHcCCCeEE
Confidence 445554 33444554 899999986542 110 1 234677777788999 78
Q ss_pred EEecccCCCcHHH-H----HHHHHHHHHcCC----CeEEEcCcccc-Cc-----cchHHHHHHHHHHhh
Q 008480 455 VAVNMFATDSKAE-L----NAVRNAAMAAGA----FDAVVCSHHAH-GG-----KGAVDLGIAVQRACE 508 (564)
Q Consensus 455 VAIN~F~tDT~aE-i----~~v~~~~~~~G~----~~~~vs~~wak-GG-----eGa~eLA~~Vvea~e 508 (564)
|++|+-.-..++| + +.+++++++.|. ..++.+..+.. -| +|-.+|-+.+.+.+.
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 9999986543222 2 345667777773 12555555432 11 456677777766553
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.48 E-value=5.8 Score=40.59 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|++|+|++ |.|.||||++.-|+..+. +.|.+++
T Consensus 61 ~~G~ii~I~G----~pGsGKTtLal~la~~~~-~~g~~vl 95 (356)
T 1u94_A 61 PMGRIVEIYG----PESSGKTTLTLQVIAAAQ-REGKTCA 95 (356)
T ss_dssp ETTSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 5799999998 789999999999988873 5565543
No 235
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=60.45 E-value=9.4 Score=32.84 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=41.5
Q ss_pred HHHHHhhcCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 442 HIANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.+......++|++|++|+..-..+ .+.+..++++++.++. +..+ =++-|+|-.++-+.+++.+.
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 107 DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLET--SALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 344444578999999999764322 1224456788888875 4444 35567888887777766553
No 236
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=60.19 E-value=61 Score=29.78 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=63.3
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec-ccCC---CcHH-------HHHHHHHHHHHcCCCeEEEcCccc----
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN-MFAT---DSKA-------ELNAVRNAAMAAGAFDAVVCSHHA---- 490 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN-~F~t---DT~a-------Ei~~v~~~~~~~G~~~~~vs~~wa---- 490 (564)
.+|-+.-++.+..+++.|+..+.+|.+.||.-- .++. ++++ -++.+.+.|++.|+. +++-++..
T Consensus 72 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~ 150 (275)
T 3qc0_A 72 APDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPLHPMYAA 150 (275)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCCCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeECCCcccC
Confidence 345567778888999999999999999988753 3432 3333 244555667788997 77766421
Q ss_pred cC-ccchHHHHHHHHHHhhcCCCCCcccCCC-----CCCHHHHHHHHH
Q 008480 491 HG-GKGAVDLGIAVQRACENVTQPLKFLYPL-----DVSIKEKIDTIA 532 (564)
Q Consensus 491 kG-GeGa~eLA~~Vvea~e~~~~~fk~LYd~-----~~~I~eKIetIA 532 (564)
.+ --...+-+.++++.+. + ++.+.+|. +.++.+-|+.+.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~--~-~vg~~~D~~h~~~~~d~~~~l~~~~ 195 (275)
T 3qc0_A 151 DRACVNTLGQALDICETLG--P-GVGVAIDVYHVWWDPDLANQIARAG 195 (275)
T ss_dssp TTBSCCCHHHHHHHHHHHC--T-TEEEEEEHHHHTTCTTHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhC--c-ccEEEEEhhhheeCCCHHHHHHHcC
Confidence 11 1123344455666653 3 55555432 245666666665
No 237
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=60.19 E-value=17 Score=37.61 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCCCc----HHH----HHHHHHHHHHcCCC----eEEEcCccccCccchH
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAE----LNAVRNAAMAAGAF----DAVVCSHHAHGGKGAV 497 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~tDT----~aE----i~~v~~~~~~~G~~----~~~vs~~wakGGeGa~ 497 (564)
...+|+..++.+|+| +||++|+..-.. ++. .+.+++++++.|.. .++.+..+ -|+|-.
T Consensus 131 qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~--~g~~v~ 201 (435)
T 1jny_A 131 QTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAP--SGDNIT 201 (435)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTT--TTBTTT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecc--cCcccc
Confidence 678899999999985 899999976533 333 34566777777731 24444443 356543
No 238
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.85 E-value=4.4 Score=41.55 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+..++|+|+| |.|.||||+++-|++.++
T Consensus 8 ~~~~~i~i~G----ptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMG----PTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEEC----CTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEEC----CCccCHHHHHHHHHHhCC
Confidence 4467888887 669999999999998874
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=59.82 E-value=3.8 Score=42.19 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+++|+|+| |.|.||||+++.|++.++
T Consensus 3 ~~~i~i~G----ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVG----PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEEC----CCcCCHHHHHHHHHHhCc
Confidence 56888887 669999999999998884
No 240
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=59.81 E-value=4.3 Score=37.34 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+|..|+++|+ -|.||||.+--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGA----PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34778999985 5999999888887776
No 241
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.64 E-value=23 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=39.3
Q ss_pred cCCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+||++|+..-.. +...+.+.+++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS--AKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999976421 12234456777888886 44433 4568888888888877764
No 242
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.49 E-value=4.7 Score=34.10 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGL 93 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL 93 (564)
++|+++|. -|.||||++--|
T Consensus 2 ~~I~l~G~----~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGM----PGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECC----TTSCHHHHHHHH
T ss_pred cEEEEECC----CCCCHHHHHHHH
Confidence 36788874 799999977766
No 243
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=59.45 E-value=25 Score=33.75 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCcEE-EEec---ccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 008480 440 ARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (564)
Q Consensus 440 ~kHIeNi~~fGvPvV-VAIN---~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeG 495 (564)
++.++.+++.|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|+.+
T Consensus 34 ~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~ 92 (294)
T 2whl_A 34 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGRDS 92 (294)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 467888999999999 7776 57888899999999999999996 8887777766654
No 244
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=59.39 E-value=57 Score=30.75 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=64.6
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec--c-cCCCcHHH-------HHHHHHHHHHcCCCeEEEcCccccCccc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN--M-FATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN--~-F~tDT~aE-------i~~v~~~~~~~G~~~~~vs~~wakGGeG 495 (564)
.++-+..++.+..+++.|+..+.+|.+.||.-- . +..++++. ++.+.+.+++.|+. +++-+++..-. .
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~ 174 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLM-N 174 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGG-C
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCccc-C
Confidence 345567788888999999999999999988531 1 12234433 34455667778996 77777753211 1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 496 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 496 a~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
..+-+.++++.+. +.++.+.||. ..++.+-|+....
T Consensus 175 ~~~~~~~l~~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 216 (295)
T 3cqj_A 175 SISKALGYAHYLN--NPWFQLYPDIGNLSAWDNDVQMELQAGIG 216 (295)
T ss_dssp SHHHHHHHHHHHC--CTTEEEECBHHHHHSSSCCHHHHHHHTGG
T ss_pred CHHHHHHHHHhcC--CCCeEEEeccchHhhcCCCHHHHHHHhcc
Confidence 2344556666663 2357766653 3456666666544
No 245
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=59.19 E-value=7.7 Score=35.00 Aligned_cols=69 Identities=9% Similarity=-0.108 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhc--CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 438 NLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 438 NL~kHIeNi~~f--GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++...++.+.++ ++|+|+++|+..-......+...+++++.++. +..+. ++-|+|-.+|-+.+.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 105 NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS--AKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp THHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB--GGGTBTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 444445555443 89999999997643332233445677778885 44333 56788988988888887654
No 246
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=59.12 E-value=3.4 Score=42.40 Aligned_cols=124 Identities=9% Similarity=-0.146 Sum_probs=63.8
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHH--HHHHHHcCCC---------eEEEcCccccCcc
Q 008480 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAV--RNAAMAAGAF---------DAVVCSHHAHGGK 494 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v--~~~~~~~G~~---------~~~vs~~wakGGe 494 (564)
.+=++.|..++..+.+.+..+..-++ ..+=.++++-..++.+..+ .+-|.. +-. -+-..+.|..+|.
T Consensus 187 ~eyl~~vr~~Y~~l~~~~~~l~~~~~-~~~~w~~l~~~~~~~~~~~~~~~~~~~-~~~p~~~~tlf~~~k~~~~~~~~~~ 264 (334)
T 1p6x_A 187 ITLIATLRNVYFMLVNTCHFLRSGRV-WRDGWGELPTSCGAYKHRATQMDAFQE-RVSPELGDTLFALFKTQELLDDRGV 264 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTTTTSCCCSHHHHHHHTSTTCCCC-CSSCCGGGSGGGGGCSGGGBCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCc-eeechhhcCCCChhhhhhhcccccccC-CCCCchHhHHHHHHCchhhcCCCCC
Confidence 45677888888888888887664220 0011123333334444333 111111 100 0112366777887
Q ss_pred chHHHHHHHHHHhhcCCCCCc-ccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhc
Q 008480 495 GAVDLGIAVQRACENVTQPLK-FLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFV 552 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk-~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~ 552 (564)
--.-+|...-..++. -.+++ |.-|.+.+.++=...++. .=+-.-...+..+-.+|+.
T Consensus 265 ~~~~~~~~l~~l~~~-l~~~~~~~~d~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (334)
T 1p6x_A 265 ILEVHAWALDALMLK-LRNLNVFSADLSGTPRQCAAVVESLLPLMSSTLSDFDSASALER 323 (334)
T ss_dssp BCHHHHHHHHHHHHH-HTTEEEEEEECCSCHHHHHHHHHTTGGGSCEEEEEHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH-hccCeEEEEeCCCCHHHHHHHHHHhCcCCccccCChhHHHHHHH
Confidence 766666554444432 12333 233445577777777777 6666666666666555543
No 247
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=59.07 E-value=20 Score=31.12 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=36.1
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~-----~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+|+++|+-.-..+.+.+.+.+... +.+.. +. +.=++-|+|-.+|-+.+++.+..
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQ--ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE-EE--EccCCCCcCHHHHHHHHHHHHHH
Confidence 5899999999975433212222333332 22332 33 33367789999999999988754
No 248
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=58.86 E-value=25 Score=35.29 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhcCCcE-EEEecccCCC-c---------HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 438 NLARHIANTKAYGANV-VVAVNMFATD-S---------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAIN~F~tD-T---------~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
...+-++.++++|+|+ =|.+|+.... + +.+-+.+.+.+++.+......--....-=.|-..|. ++.
T Consensus 253 e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~~g~~~L~-~~~-- 329 (349)
T 3ug7_A 253 ESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLK-QIA-- 329 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCSCSHHHHH-HHH--
T ss_pred HHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCHHHHH-HHH--
Confidence 5677788889999999 4788974332 1 234556777777777763222222222223322222 111
Q ss_pred hhcCCCCCcccCCCCCCHHHHHHHH
Q 008480 507 CENVTQPLKFLYPLDVSIKEKIDTI 531 (564)
Q Consensus 507 ~e~~~~~fk~LYd~~~~I~eKIetI 531 (564)
+.||..++|..+||+.+
T Consensus 330 --------~~l~~~~~~~~~~~~~~ 346 (349)
T 3ug7_A 330 --------KILYGEEEKEEQKIEQK 346 (349)
T ss_dssp --------HHHC-------------
T ss_pred --------HHHcCCCCccccccccc
Confidence 34677777777777754
No 249
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.76 E-value=2.1 Score=42.14 Aligned_cols=154 Identities=19% Similarity=0.270 Sum_probs=78.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC------ccccccCCCCCCce-----------e
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP------TFGIKGGAAGGGYS-----------Q 131 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP------~FGiKGGAaGGGys-----------Q 131 (564)
..-||++| |.|.|||+++..+.+... +.+. .++.+.-+++-+ .||-..|+--|-.. -
T Consensus 25 ~~~vLi~G----e~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g 98 (304)
T 1ojl_A 25 DATVLIHG----DSGTGKELVARALHACSA-RSDR-PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 98 (304)
T ss_dssp TSCEEEES----CTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTS
T ss_pred CCcEEEEC----CCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCC
Confidence 34577776 679999999988888763 4333 345554444422 26654333221110 1
Q ss_pred eecCcccccccchhhhHHHHHHhHHHHHHHhhhhc-----------------ccc---------CChhHhhhcc------
Q 008480 132 VIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH-----------------EAS---------QSDKALFNRL------ 179 (564)
Q Consensus 132 v~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~-----------------~n~---------~~~~~~~~rl------ 179 (564)
++=+|||+. +.. ...+.|...+++.-|. .|. .-+.+||.||
T Consensus 99 ~L~LDEi~~-l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 99 TLFLDEIGD-ISP------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp EEEEESCTT-CCH------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEE
T ss_pred EEEEecccc-CCH------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEe
Confidence 444666652 222 2344455556654321 111 1135688887
Q ss_pred CCCCCcCCcchhHHHHHHHHhhcCC-CCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccccee
Q 008480 180 CPPNKEGERSFSNIMFRRLKKLGIS-KTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKIT 246 (564)
Q Consensus 180 ~~~~~~~~r~~~~~~~~rl~~l~i~-~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 246 (564)
+|+.+.-...+....-..|+++.-. ...+..++++-+..+... .|+. |-|.|++++
T Consensus 172 lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~-------~wpG----nvReL~~~l 228 (304)
T 1ojl_A 172 MPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY-------DWPG----NIRELENAI 228 (304)
T ss_dssp CCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-------CCSS----HHHHHHHHH
T ss_pred ccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC-------CCCC----CHHHHHHHH
Confidence 6765432333333322333333211 123456788877777643 3653 667777753
No 250
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=58.55 E-value=19 Score=32.13 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=44.9
Q ss_pred hHHHHHHHHhh----cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++.+.++.+++ .++|+|++.|+..-..+. ..+..++++++.++. +.. .=++-|+|-.+|-+.+++.+.+
T Consensus 114 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e--~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 114 KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIE--TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp THHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEE--EBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEE--EcCCCCCCHHHHHHHHHHHHHH
Confidence 44444444443 489999999987543221 233456778888875 433 3367788988888888877753
No 251
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=58.31 E-value=58 Score=29.97 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=58.8
Q ss_pred ccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccCCCc----HHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 008480 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS----KAE-------LNAVRNAAMAAGAFDAVVCSHHA 490 (564)
Q Consensus 423 ~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~tDT----~aE-------i~~v~~~~~~~G~~~~~vs~~wa 490 (564)
.+..+|-+..++....+.++|+..+.+|.+.||.- ...+.+. ++. +..+.+.+++.|+. +++-++..
T Consensus 62 ~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~ 140 (254)
T 3ayv_A 62 DLLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSHE 140 (254)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCCC
Confidence 34456778888999999999999999999998764 3333331 222 23445566678996 77777753
Q ss_pred cCccchHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 491 HGGKGAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 491 kGGeGa~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
. ..+-+..+++.+. .++.+.||.
T Consensus 141 ~----~~~~~~~l~~~v~---~~vg~~~D~ 163 (254)
T 3ayv_A 141 P----HPEALRPVLEAHA---GELGFCFDA 163 (254)
T ss_dssp S----SGGGTHHHHHHHT---TSSEEEEEH
T ss_pred C----CHHHHHHHHHhcC---cCEEEEEEc
Confidence 2 3333445566654 357777764
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=58.29 E-value=5.9 Score=41.23 Aligned_cols=27 Identities=44% Similarity=0.714 Sum_probs=21.3
Q ss_pred CCcE--EEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYY--VVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gkl--IlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|+. |++.+. -|.||||++..|++.|+
T Consensus 21 ~g~~~~i~l~G~----~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 21 DNYRVCVILVGS----PGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TCSCEEEEEECC----TTSSHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECC----CCCcHHHHHHHHHHHhC
Confidence 3554 666664 79999999999999885
No 253
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=58.26 E-value=7.4 Score=42.29 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.++++++|| |.|.|||||...+...|.
T Consensus 163 ~~~~~vi~G----~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISG----GPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEEC----CTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 368999999 789999999999999994
No 254
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=58.20 E-value=24 Score=31.45 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=45.0
Q ss_pred hHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.+++ .++|+|+++|+..-..+. ..+.+++++++.|+..+..+. ++=|+|-.+|-+.+++.+.
T Consensus 119 ~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 119 SVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS--AKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 44444444444 579999999986543221 234567788888883244333 5668898888888887764
No 255
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=58.17 E-value=13 Score=32.84 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=39.5
Q ss_pred cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+|+++|+..-..+. ..+..++++++.|+. +.. .=++=|+|-.+|-+.+++.+.+
T Consensus 128 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FME--SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE--CCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEE--EeCCCCCCHHHHHHHHHHHHHh
Confidence 489999999997643222 123456778888885 443 3356688888888888877754
No 256
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=57.94 E-value=27 Score=30.39 Aligned_cols=57 Identities=11% Similarity=-0.033 Sum_probs=35.3
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHH--H---cCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAM--A---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~--~---~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+|+++|+..-..+.+.+.+.+++. . .++. +. ..=++-|+|-.+|-+.+.+.++
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH-IC--ASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE-EE--EccCCCCcCHHHHHHHHHHHHH
Confidence 4899999999976543323334445543 1 2332 32 3346778898888888877664
No 257
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=57.81 E-value=27 Score=29.77 Aligned_cols=63 Identities=10% Similarity=-0.073 Sum_probs=38.0
Q ss_pred HHHHhh---cCCcEEEEecccCCC--c--HHHHHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKA---YGANVVVAVNMFATD--S--KAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~---fGvPvVVAIN~F~tD--T--~aEi~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+..++. -++|+|++.|+..-. . .-..+.+++++++. +.. +..+ =++-|+|-.++-+.+++.+.
T Consensus 98 i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 98 LSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS-YYET--XATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE-EEEE--BTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe-EEEE--eccccCCHHHHHHHHHHHHH
Confidence 444444 389999999996541 1 11123345677765 454 3333 25678888888777776653
No 258
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=57.41 E-value=9.1 Score=39.66 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=31.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
-++|-|+||+ |.-.-||||||..|.++| ++.|.++..
T Consensus 150 v~~k~i~v~G---TD~~VGK~~ts~~L~~~l-~~~G~~a~~ 186 (349)
T 2obn_A 150 LPCRRVLTVG---TDMAIGKMSTSLELHWAA-KLRGWRSKF 186 (349)
T ss_dssp CSSEEEEEEE---SSSSSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEcC---CCccccceeHHHHHHHHH-HhcCCcEEE
Confidence 3578899998 456699999999999999 588999875
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=57.37 E-value=22 Score=31.03 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=44.3
Q ss_pred hHHHHHHHHhh--cCCcEEEEecccCCCcHHHHH-----HHHHHHHHcCCCeE-EEcCccccCc-cchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKA--YGANVVVAVNMFATDSKAELN-----AVRNAAMAAGAFDA-VVCSHHAHGG-KGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~--fGvPvVVAIN~F~tDT~aEi~-----~v~~~~~~~G~~~~-~vs~~wakGG-eGa~eLA~~Vvea~e 508 (564)
++...++.++. .++|+|++.|+..-..+.++. ...+++++.|.... ...+.=|+-| +|-.+|.+.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 98 AMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp THHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 45555555544 379999999998766555542 23455655676411 0122335556 488999999988764
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.24 E-value=7 Score=35.19 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|..|.++| |-|.||||++--|+.-+
T Consensus 4 ~~~~~i~i~G----~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAG----GTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 5688888888 46999999988776655
No 261
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=57.15 E-value=6 Score=37.62 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|..|.+++ |.|.||||++--|++.|+
T Consensus 25 ~~g~~I~I~G----~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDG----PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEEC----CTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 4577888887 689999999888887774
No 262
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=56.99 E-value=29 Score=29.56 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=41.2
Q ss_pred HHHHhhc--CCcEEEEecccCCCcH-HH-------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 443 IANTKAY--GANVVVAVNMFATDSK-AE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT~-aE-------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.++++ ++|+|+++|+..-..+ .. .+...+++++.|...+..+. ++=|+|-.+|-+.+++.
T Consensus 100 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 100 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec--CCCccCHHHHHHHHHHH
Confidence 4444443 8999999999643211 11 12345677777863244333 56678888998888887
Q ss_pred hhc
Q 008480 507 CEN 509 (564)
Q Consensus 507 ~e~ 509 (564)
+-+
T Consensus 178 ~~~ 180 (186)
T 1mh1_A 178 VLC 180 (186)
T ss_dssp HSC
T ss_pred Hhc
Confidence 754
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.87 E-value=6.1 Score=35.67 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|..|.+.+ |.|.||||+.-.|+..+
T Consensus 31 ~~Ge~v~L~G----~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNG----DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEEC----STTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhC
Confidence 5688888887 78999999998887766
No 264
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=56.73 E-value=19 Score=30.93 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=43.3
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCe----EEEcCccccCccchHHHHHHHHHHhhc
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD----AVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~----~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.+.++..++|+++++|+..-..+. -+.+.+++++.|... ..+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 344556899999999997654432 234567777778641 011223356789988888888877754
No 265
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=56.60 E-value=50 Score=28.33 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=56.3
Q ss_pred chHHHHHHHHhhcCCCCeEEeeccccccc---ccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCcccc
Q 008480 348 SSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (564)
Q Consensus 348 nSiiAtk~ALklag~~dyvVTEAGFGaDl---GaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l 424 (564)
.+.++.++.-+-. ++.|.-.|++-+- +.+++-.. ....+||.|||-.-.--+.
T Consensus 25 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~G~ND~~------------------ 80 (185)
T 3hp4_A 25 VKLLQDKYDAEQS---DIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIELGANDGL------------------ 80 (185)
T ss_dssp HHHHHHHHHHTTC---CEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEECCHHHHH------------------
T ss_pred HHHHHHHHHhcCC---cEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEeecccCC------------------
Confidence 4556665554422 6777767765442 22232221 1224899988865222211
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccC----CCcHHH-HHHHHHHHHHcCCC
Q 008480 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSKAE-LNAVRNAAMAAGAF 481 (564)
Q Consensus 425 ~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~----tDT~aE-i~~v~~~~~~~G~~ 481 (564)
...+.+..++ ||.+-|+.+++.+.++|+.--..| .+..++ -+.+++.|++.|+.
T Consensus 81 ~~~~~~~~~~---~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~ 139 (185)
T 3hp4_A 81 RGFPVKKMQT---NLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH 139 (185)
T ss_dssp TTCCHHHHHH---HHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCcCHHHHHH---HHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE
Confidence 1122334443 667777788887877765421122 222223 35668889998885
No 266
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=56.54 E-value=29 Score=33.36 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=62.5
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cc-----cCC--CcHHH-------HHHHHHHHHHcCCCeEEEcC-
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NM-----FAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS- 487 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~-----F~t--DT~aE-------i~~v~~~~~~~G~~~~~vs~- 487 (564)
+..+|.+.-++.+..+++.|+..+.+|.++||.- .. |.. ++++. +..+.+.|++.|+..+++-+
T Consensus 101 l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~ 180 (316)
T 3qxb_A 101 FLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEPV 180 (316)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 3356777888999999999999999999999742 11 111 22222 33455567788985144544
Q ss_pred -ccccCccchHHHHHHHHHHhhc-CCCCCcccCCC-----------CCCHHHHHHHHHh
Q 008480 488 -HHAHGGKGAVDLGIAVQRACEN-VTQPLKFLYPL-----------DVSIKEKIDTIAR 533 (564)
Q Consensus 488 -~wakGGeGa~eLA~~Vvea~e~-~~~~fk~LYd~-----------~~~I~eKIetIA~ 533 (564)
++..=+.- .+-+.++++.++. .+.++.+++|. +.++.+=|+....
T Consensus 181 ~~~~~~~~t-~~~~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~ 238 (316)
T 3qxb_A 181 PLATEFPSS-AADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQP 238 (316)
T ss_dssp SCTTBSSCS-HHHHHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGG
T ss_pred CCccccCCC-HHHHHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHh
Confidence 33211222 3334455666621 22456666653 3455555555543
No 267
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=56.50 E-value=5.7 Score=36.59 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
++++|+++|. -|.||||.+--|++.|
T Consensus 6 ~~~~I~l~G~----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC----TTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 4678999985 6999999888887765
No 268
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=56.14 E-value=12 Score=31.36 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=36.6
Q ss_pred hcCCcEEEEecccCCCcH---H--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 448 AYGANVVVAVNMFATDSK---A--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~---a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
..++|+++++|+..-..+ . ..+..++++++.|+. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETS--AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHTTS
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 358999999998654221 1 123456677778875 44433 455788888877776544
No 269
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=56.02 E-value=49 Score=30.47 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhhcCCcEEEEecccCC-C-c----HHHHHHHHHHHHHcCCCeEEEcCccccC-ccchHHHHHHHHHHhhc
Q 008480 437 VNLARHIANTKAYGANVVVAVNMFAT-D-S----KAELNAVRNAAMAAGAFDAVVCSHHAHG-GKGAVDLGIAVQRACEN 509 (564)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAIN~F~t-D-T----~aEi~~v~~~~~~~G~~~~~vs~~wakG-GeGa~eLA~~Vvea~e~ 509 (564)
..+++.|+..+.+|.+.||..=-+.. + - .+-++.+.+.|++.|+. +++-++.-.+ --...+-+.++++.+.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~~~~l~~~v~- 162 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLGFRVSSLRSAVWAQQLIREAG- 162 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCCSTTCSCCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCCCcccccCHHHHHHHHHHhC-
Confidence 56899999999999999986322111 1 1 44455666777788996 7777774211 1122334445666664
Q ss_pred CCCCCcccCCCC
Q 008480 510 VTQPLKFLYPLD 521 (564)
Q Consensus 510 ~~~~fk~LYd~~ 521 (564)
.++.+.||.-
T Consensus 163 --~~~g~~~D~~ 172 (272)
T 2q02_A 163 --SPFKVLLDTF 172 (272)
T ss_dssp --CCCEEEEEHH
T ss_pred --cCeEEEEEch
Confidence 2678777654
No 270
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=55.49 E-value=34 Score=33.47 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcHHHH--------HHHHHHHHHcCC--CeEEEcCccc
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSKAEL--------NAVRNAAMAAGA--FDAVVCSHHA 490 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~aEi--------~~v~~~~~~~G~--~~~~vs~~wa 490 (564)
+.+..++++ ++|+||++|+..-..+++. +.+.+++++.|+ ..+..+..|.
T Consensus 104 ~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 104 KALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred HHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 344455443 8999999999876553232 456788888884 3467777777
No 271
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=55.27 E-value=24 Score=34.28 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=38.7
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecccCC-CcHHHH-------HHHHHHHHHcCCCeEEEcCccc
Q 008480 433 EAGCVNLARHIANTKAYGANVVVAVNMFAT-DSKAEL-------NAVRNAAMAAGAFDAVVCSHHA 490 (564)
Q Consensus 433 e~G~~NL~kHIeNi~~fGvPvVVAIN~F~t-DT~aEi-------~~v~~~~~~~G~~~~~vs~~wa 490 (564)
++....+++.|+..+.+|.|.||. --++. .+++++ ..+.+.|++.|+. +++-+|..
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 173 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCSG
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 445678999999999999999995 33322 345444 3445567788996 77766643
No 272
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=55.24 E-value=7.7 Score=36.02 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..++.|+++|+ -|.||||.+.-|++.|
T Consensus 14 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGP----PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34678999886 4999999998888777
No 273
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=55.24 E-value=40 Score=29.12 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=34.9
Q ss_pred CCcEEEEecccCCCcH---HHHHHHHHH---HHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 450 GANVVVAVNMFATDSK---AELNAVRNA---AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~---aEi~~v~~~---~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++|+||++|+..-..+ +|+...... ++..++. +. +.=++-|+|-.+|-+.+++.+.
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IF--ASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EE--ECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EE--EeeCCCccCHHHHHHHHHHHHH
Confidence 8999999999765444 444322211 1334443 33 3335678898888888887764
No 274
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=55.10 E-value=8.4 Score=33.16 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHHHH-HHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aEi~-~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
++.+++.++|+|++.|+-.-..+.++. ...+++++.|.. +..+. |+=|+|-.+|-+.+.+.+
T Consensus 101 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 101 TLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEE--cCCCCCHHHHHHHHHHHh
Confidence 444555799999999985321111110 135667777876 44333 667899888888877655
No 275
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=55.02 E-value=70 Score=29.92 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=54.4
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-------cccCC-------C-cHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAV-------NMFAT-------D-SKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAI-------N~F~t-------D-T~aE-------i~~v~~~~~~~G~~~~~vs~~ 488 (564)
..++.+..+++.|+..+.+|.+.||.. -.+.. . +++. +..+.+.|++.|+. +++-+|
T Consensus 84 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 162 (301)
T 3cny_A 84 GIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHHH 162 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 456778899999999999999998865 12211 1 4443 33455666778996 778777
Q ss_pred cccCccchHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 489 HAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 489 wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
+..-.. ..+-+.++++.+. +.++.++||.
T Consensus 163 ~~~~~~-~~~~~~~l~~~~~--~~~vg~~~D~ 191 (301)
T 3cny_A 163 MGTGIQ-TKEETDRLMANTD--PKLVGLLYDT 191 (301)
T ss_dssp TTSSSC-SHHHHHHHHHTSC--TTTCEEEEEH
T ss_pred CCcccC-CHHHHHHHHHhCC--ccceeEEech
Confidence 532222 2344555566553 2457777765
No 276
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=54.95 E-value=46 Score=31.06 Aligned_cols=97 Identities=6% Similarity=0.034 Sum_probs=60.6
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEeccc-C--CCcHH-------HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHH
Q 008480 433 EAGCVNLARHIANTKAYGANVVVAVNMF-A--TDSKA-------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (564)
Q Consensus 433 e~G~~NL~kHIeNi~~fGvPvVVAIN~F-~--tDT~a-------Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~ 502 (564)
++....+++.|+..+.+|.+.|+..--+ + .++++ -++.+.+.|++.|+. +++-+|+..-.. ..+-+.+
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~-~~~~~~~ 157 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHPNTLTD-TLPSTLE 157 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCTTSTTS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCCCcCcC-CHHHHHH
Confidence 4456789999999999999999774322 2 12333 344556667788996 778777543222 2344566
Q ss_pred HHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 503 VQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 503 Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
+++.+. +.++.+.||. ..++.+=|+....
T Consensus 158 l~~~~~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 192 (286)
T 3dx5_A 158 LLGEVD--HPNLKINLDFLHIWESGADPVDSFQQLRP 192 (286)
T ss_dssp HHHHHC--CTTEEEEEEHHHHHHTTCCHHHHHHHHGG
T ss_pred HHHhcC--CCCeEEEeccccHhhcCCCHHHHHHHHHh
Confidence 677664 2456666643 3455666666654
No 277
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=54.92 E-value=32 Score=34.97 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCCC-cHHHHH----HHHHHHHHcCC
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAELN----AVRNAAMAAGA 480 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~tD-T~aEi~----~v~~~~~~~G~ 480 (564)
...+|++.++.+|+| +||++|+-.-. .++.++ .+++++++.|.
T Consensus 115 qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 115 QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 346788888889999 89999997653 333333 45567777763
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.89 E-value=4.7 Score=35.43 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|++++ |.|.||||++--|++.|+
T Consensus 6 ~i~i~G----~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIG----FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEEC----CTTSCHHHHHHHHHHHHT
T ss_pred EEEEEc----CCCCCHHHHHHHHHHHcC
Confidence 466666 579999999988887773
No 279
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=54.66 E-value=26 Score=32.53 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHhhcCCcEE-EEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 443 IANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 443 IeNi~~fGvPvV-VAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
++.+++.|++.+ |.+|++...+.. +.+.+.++..|.+ +. ...-. -..+.++...+ .. -+.|..+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~---------~~~~~~a~~~g-~~-v~~~~~~ 218 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK-VI-GLIPE---------DPEVRRAAAYG-KP-VVLRSPN 218 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC-EE-EEEEC---------CHHHHHHHHHT-SC-HHHHCTT
T ss_pred HHHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC-eE-EECCC---------CHHHHHHHHcC-Cc-eEEcCCC
Confidence 333444466554 889999887665 4456666667775 32 11111 12333344332 11 1235556
Q ss_pred CCHHHHHHHHHh-HhCC
Q 008480 522 VSIKEKIDTIAR-SYGA 537 (564)
Q Consensus 522 ~~I~eKIetIA~-IYGA 537 (564)
.+..+-++.+|+ +.+.
T Consensus 219 ~~~~~~~~~la~~l~~~ 235 (263)
T 1hyq_A 219 SPAARAIVELANYIAGG 235 (263)
T ss_dssp SHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 778888999999 8765
No 280
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=54.34 E-value=10 Score=41.08 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
..+.+|+| |.|.|||||...+...|-..-+++..+
T Consensus 195 ~~~~li~G----ppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 195 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CSEEEEEC----CTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCeEEEC----CCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45888888 889999999999988884213444333
No 281
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=54.15 E-value=36 Score=30.25 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHhhc--CCcEEEEecccCCCcHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 443 IANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.++++ ++|+||++|+..-..+.+ .+..++++++.+...+.. .=++=|+|-.+|-+.+++.
T Consensus 120 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 120 VPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE--CSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE--eeCCCCCCHHHHHHHHHHH
Confidence 4444444 899999999975433221 123456677777632433 3356678888888888877
Q ss_pred hh
Q 008480 507 CE 508 (564)
Q Consensus 507 ~e 508 (564)
+-
T Consensus 198 i~ 199 (207)
T 2fv8_A 198 AL 199 (207)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 282
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=54.04 E-value=6.6 Score=40.68 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.++|+| |+|.||||+..-+...|. ..|.+.+++
T Consensus 47 ~~li~G----~aGTGKT~ll~~~~~~l~-~~~~~~il~ 79 (459)
T 3upu_A 47 HVTING----PAGTGATTLTKFIIEALI-STGETGIIL 79 (459)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCCEEE
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHH-hcCCceEEE
Confidence 899998 799999999999999994 677743333
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=53.95 E-value=7.3 Score=36.38 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
|+|+++| |.|.||||+.-.|.+-+...++.....+=|.|--|=
T Consensus 2 RpIVi~G----PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 2 RPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred CEEEEEC----CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 4577776 899999999888877664356667778889887663
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.93 E-value=16 Score=32.19 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.|+.+++.+ |-|.||||+...++..+. .-|++. +.+..+
T Consensus 35 ~g~~~~l~G----~~G~GKTtL~~~i~~~~~-~~g~~~-~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWG----EEGAGKSHLLQAWVAQAL-EAGKNA-AYIDAA 73 (149)
T ss_dssp CCSEEEEES----SSTTTTCHHHHHHHHHHH-TTTCCE-EEEETT
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCcE-EEEcHH
Confidence 578888776 689999999999988884 446543 344433
No 285
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=53.91 E-value=6.6 Score=41.58 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~i~i~G----ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAG----TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEE----CSSSSHHHHHHHHHHHHT
T ss_pred cEEEEEC----cchhhHHHHHHHHHHHCC
Confidence 4788887 679999999999999985
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=53.67 E-value=19 Score=33.25 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=37.3
Q ss_pred cCCcEEEEecccCCCcHHHHH--------HHHHHHHHcCCCeEEEcCcccc---CccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKAELN--------AVRNAAMAAGAFDAVVCSHHAH---GGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~--------~v~~~~~~~G~~~~~vs~~wak---GGeGa~eLA~~Vvea~e~ 509 (564)
.+.|+||++|+...-.+.+++ .+++++++.|.+ +...+.-+. .++|-.+|-+.+.+...+
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 446999999997654444444 567777777876 554444433 236778888888887754
No 287
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=53.65 E-value=9.4 Score=40.03 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.+.++.++++++|+||++|+-.-..+.+.+...+++++.|+. +.. .=++-|+|-.+|-+.+++.+.+
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~~--vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VLL--VSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CCC--CSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EEE--EECCCCCCHHHHHHHHHHhhhh
Confidence 456667777899999999997654444445566666667775 333 3356789999999999998843
No 288
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=53.11 E-value=5 Score=38.01 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
.++++|++.|+ -|.||||.+--|++.|. + ...++||
T Consensus 22 ~~~~~I~ieG~----~GsGKST~~~~L~~~l~---~---~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGN----IAAGKSTFVNILKQLCE---D---WEVVPEP 57 (263)
T ss_dssp -CCEEEEEECS----TTSSHHHHHTTTGGGCT---T---EEEECCC
T ss_pred cCceEEEEECC----CCCCHHHHHHHHHHhcC---C---CEEEecc
Confidence 46889999996 69999999888776662 2 4556665
No 289
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=53.00 E-value=20 Score=32.06 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHH
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~aE--------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vv 504 (564)
..++.++++ ++|+||++|+..-..+.+ .+...+++++.|...+..+ =++-|+|-.+|-+.++
T Consensus 123 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 123 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC--SALTQRGLKTVFDEAI 200 (204)
T ss_dssp THHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC--CTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe--eCCCCCCHHHHHHHHH
Confidence 334445554 899999999865322221 2345567888887534333 3567888888877776
Q ss_pred HH
Q 008480 505 RA 506 (564)
Q Consensus 505 ea 506 (564)
+.
T Consensus 201 ~~ 202 (204)
T 4gzl_A 201 RA 202 (204)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 290
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=52.97 E-value=18 Score=34.55 Aligned_cols=60 Identities=7% Similarity=-0.017 Sum_probs=33.6
Q ss_pred HHHhhcCCcEEEEecccCCCcHHHHHH----HHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 444 ANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 444 eNi~~fGvPvVVAIN~F~tDT~aEi~~----v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
+.++. ++|+|+++|+-..-+++|++. +++.+...|++ +. ..=++-|+|-.+|.+.+.+.+
T Consensus 139 ~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~-v~--~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 139 KRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK-IY--EFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC-CC--CC-----------CHHHHHTC
T ss_pred HHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe-EE--cCCCCCChhHHHHHHHHhcCC
Confidence 33444 899999999998888888854 45555667775 22 222566788888887776643
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=52.92 E-value=7 Score=33.73 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~q 95 (564)
++|+++|. -|.||||.+--|++
T Consensus 3 ~~I~i~G~----~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC----PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHH
T ss_pred eEEEEecC----CCCCHHHHHHHHHh
Confidence 47888884 69999998888776
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=52.70 E-value=14 Score=36.73 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
..|..|.+.+ |-|.||||+.--|+--+. .-+.+..+
T Consensus 100 ~~g~vi~lvG----~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVG----VNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp CSSSEEEEEC----STTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 3588888887 469999999999987774 44555443
No 293
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=52.63 E-value=12 Score=41.66 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.|++|++||+ .|.||||++--|++.|. ..|...+..
T Consensus 51 ~g~lIvLtGl----sGSGKSTlAr~La~~L~-~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 6889999997 69999999999999984 567776543
No 294
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=51.91 E-value=44 Score=36.55 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=55.0
Q ss_pred ccccccccccccCCCC-cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 008480 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (564)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvP-vV 454 (564)
|-|+|. +-...++. .|++|+|.-+..=-+..+... ......|+..++..|+| +|
T Consensus 254 G~e~f~--~~~~~~~~~aD~~llVVDa~~g~~e~~~~~----------------------~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 254 GHRDFV--PNAIMGISQADMAILCVDCSTNAFESGFDL----------------------DGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp SSSCHH--HHHTTTSSCCSEEEEEEECSHHHHHTTCCT----------------------TSHHHHHHHHHHTTTCCEEE
T ss_pred CCcccH--HHHHHHHhhcCceEEEEECCCCcccccchh----------------------hhHHHHHHHHHHHcCCCeEE
Confidence 336664 34444544 899999986553222222210 02456899999999987 99
Q ss_pred EEecccCCCc--HHHH----HHHHHHHHHcCCC----eEEEcCccccCccchHHH
Q 008480 455 VAVNMFATDS--KAEL----NAVRNAAMAAGAF----DAVVCSHHAHGGKGAVDL 499 (564)
Q Consensus 455 VAIN~F~tDT--~aEi----~~v~~~~~~~G~~----~~~vs~~wakGGeGa~eL 499 (564)
|++|+...-. ++.+ +.+.+++++.|.. .++.+. |.-|+|-.+|
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vS--A~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS--GFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC--TTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeee--cccCCCcccc
Confidence 9999976533 3333 3344555555642 244443 3445555443
No 295
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=51.34 E-value=31 Score=29.92 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.1
Q ss_pred CCcEEEEecccCCCcHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchHHHHHHHHHHh
Q 008480 450 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 507 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~vs~~wak-GGeGa~eLA~~Vvea~ 507 (564)
++|+|++.|+..-..+. ..+..++++++.|...+.. .=++ .|+|-.+|-+.+++.+
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e--~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE--CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE--CBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE--eeecCCCcCHHHHHHHHHHHH
Confidence 89999999997543211 1234567788777433443 3355 7888888888877765
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=51.31 E-value=33 Score=29.68 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHhhcCCcEEEEecccCCCcHHHHHHHHHHHHH-c----CCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 445 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-A----GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 445 Ni~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~-~----G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
.++..++|+++++|+..-..+.|++...+..++ . +.. +.. .=++-|+|-.+|-+.+++.+
T Consensus 129 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE-LIL--FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE-EEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc-eEE--EEccCCCCHHHHHHHHHHHh
Confidence 344589999999999876555555443333222 2 333 333 33566788888888877765
No 297
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=50.70 E-value=28 Score=30.43 Aligned_cols=65 Identities=9% Similarity=-0.013 Sum_probs=43.5
Q ss_pred HHHHhhc--CCcEEEEecccCCCc----HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 443 IANTKAY--GANVVVAVNMFATDS----KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT----~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++.++.+ ++|+|+++|+-.-.. +...+.+.+++++.|+..+. +.=++-|+|-.+|-+.+++.+.+
T Consensus 118 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 118 EPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI--EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE--ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE--EeecCCCCCHHHHHHHHHHHHHh
Confidence 3344443 799999999875321 12234456788888886333 33467789999999998887754
No 298
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=50.60 E-value=7.1 Score=40.16 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=21.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++|+|+| |.|.||||++.-|++.|+
T Consensus 8 ~lI~I~G----ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVG----PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred ceEEEEC----CCcCcHHHHHHHHHHHcC
Confidence 5788887 569999999999998884
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.55 E-value=8.3 Score=34.78 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=19.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
+.|++|.+||. -|.||||++--|++.
T Consensus 19 ~~~~~i~i~G~----~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGV----TNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHh
Confidence 56889999984 599999977665443
No 300
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=50.51 E-value=17 Score=37.59 Aligned_cols=37 Identities=27% Similarity=-0.020 Sum_probs=30.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
-++|-|+||+... .-|||||+..|.++| .+.|.++..
T Consensus 167 i~~~ri~v~GTDt---~vGKt~t~~~L~~~l-~~~G~~v~~ 203 (350)
T 2g0t_A 167 KKIKVVGVFGTDC---VVGKRTTAVQLWERA-LEKGIKAGF 203 (350)
T ss_dssp CCSEEEEEEESSS---SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEecCCC---CccCccHHHHHHHHH-HhcCCeEEE
Confidence 3578899999443 589999999999999 588998754
No 301
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=50.51 E-value=4.8 Score=35.76 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhc---CCcEEEEecccCCCcHHHH--HHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTKAY---GANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~~f---GvPvVVAIN~F~tDT~aEi--~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.++.+..+ ++|+|+++|+..-..+.++ +..++++++.++. +. ..=++-|+|-.+|-+.+++.+.
T Consensus 123 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 123 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FL--ETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BC--CCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHHH
Confidence 444455555554 8999999999775443322 3456778888876 33 3335678888887777766553
No 302
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=50.47 E-value=56 Score=31.17 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=61.3
Q ss_pred ccccc-HHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cccCC-CcHHHHHHHHHHHHH-----cCCCeEEEcCccccCcc-
Q 008480 424 YLNEN-VALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT-DSKAELNAVRNAAMA-----AGAFDAVVCSHHAHGGK- 494 (564)
Q Consensus 424 l~~eN-l~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F~t-DT~aEi~~v~~~~~~-----~G~~~~~vs~~wakGGe- 494 (564)
+..+| -+..++.+..+.++|+..+.+|.+.||.- ..... +.++.++.+.+..++ .|+. +++-++...+..
T Consensus 80 l~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~-l~lEn~~~~~~~~ 158 (303)
T 3aal_A 80 IGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQ-IALETMAGKGSEC 158 (303)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCE-EEEECCCCCTTEE
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCE-EEEecCCCCCCcc
Confidence 34466 67788999999999999999999998762 22222 456666655555443 3775 777777534332
Q ss_pred c-hHHHHHHHHHHhhcCCCCCcccCCC
Q 008480 495 G-AVDLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 495 G-a~eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
+ ..+-+.++++.++. +.++.+++|.
T Consensus 159 ~~t~~~~~~li~~v~~-~~~vg~~lD~ 184 (303)
T 3aal_A 159 GRTFEELAYIIDGVAY-NDKLSVCFDT 184 (303)
T ss_dssp CSSHHHHHHHHHHCTT-GGGEEEEEEH
T ss_pred CCCHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 2 45556667777642 1357776654
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=50.36 E-value=10 Score=35.27 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+.|..|.+++. .|.||||++--|++-|
T Consensus 13 ~~~~~~i~i~G~----~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGP----ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECS----SCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 466889999884 7999999887776655
No 304
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.24 E-value=14 Score=37.90 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
+.|++|+|++ |.|.||||++.-++..+ .+.|.+++..-=|.|.-|
T Consensus 72 ~~G~li~I~G----~pGsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 72 PRGRITEIYG----PESGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEEc----CCCCChHHHHHHHHHHH-HHCCCeEEEEECCCChhH
Confidence 5799999987 56999999999998887 355666555544544443
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=50.03 E-value=9.8 Score=36.90 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=25.3
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 59 ~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+++.+. -+.|.+|+|+| |-|.||||+.--|..-+
T Consensus 16 vl~~i~-i~~g~~v~i~G----p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTG----PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEEC----STTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEEC----CCCccHHHHHHHHHHhC
Confidence 344443 35688999998 55999999988887666
No 306
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=49.77 E-value=58 Score=32.55 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=67.1
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCC
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 511 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v-------~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~ 511 (564)
|++-|+..++|||+| |+..|-.|+.+. .++|++.|+..+-+|+.+-+=. -.++.+.|-.+.+
T Consensus 57 l~eki~l~~~~gV~v------~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~--~~~~~~~I~~~~~--- 125 (251)
T 1qwg_A 57 VKEKINYYKDWGIKV------YPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDIS--LEERNNAIKRAKD--- 125 (251)
T ss_dssp HHHHHHHHHTTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCC--HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCeE------ECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHHH---
Confidence 777899999999998 678887776655 6889999998667886655422 2344444444443
Q ss_pred CCCcccCC---------CCCCHHHHHHHHHh--HhCCCceeeCH
Q 008480 512 QPLKFLYP---------LDVSIKEKIDTIAR--SYGASGVEYSE 544 (564)
Q Consensus 512 ~~fk~LYd---------~~~~I~eKIetIA~--IYGA~~V~~S~ 544 (564)
..|+.+.+ ...++.+-|+.+.+ =-||+-|....
T Consensus 126 ~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEa 169 (251)
T 1qwg_A 126 NGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEG 169 (251)
T ss_dssp TTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 34666652 34678999999988 77888886643
No 307
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=49.40 E-value=9 Score=34.84 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=17.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+++|.+|| +.|.||||++--|++
T Consensus 4 ~~~I~i~G----~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTG----GIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHH
T ss_pred ceEEEEEC----CCCCCHHHHHHHHHH
Confidence 56888888 479999997766644
No 308
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=49.31 E-value=13 Score=37.59 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=32.6
Q ss_pred cCCcEEEEecccCCCcHHHHHH----HHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 449 YGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~----v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-++|+|+++|+-..-++.|+.. +.+++++.|++-+.+|..-.++.+.-.+|++.+.+.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcC
Confidence 5799999999998888888854 4555556676522223222334455556666665543
No 309
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=49.31 E-value=1.1e+02 Score=33.49 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHHHhhcCCcEEEEecccCCCcH-----------------H----H----HHHHHHHHHHcCCC------------eEE
Q 008480 442 HIANTKAYGANVVVAVNMFATDSK-----------------A----E----LNAVRNAAMAAGAF------------DAV 484 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT~-----------------a----E----i~~v~~~~~~~G~~------------~~~ 484 (564)
|++.++.+++|+||++|+-.-... + + +..+.+...+.|.. .+-
T Consensus 114 ~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vp 193 (594)
T 1g7s_A 114 ALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVS 193 (594)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEE
T ss_pred HHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcce
Confidence 344466799999999998653210 1 1 11233334444541 122
Q ss_pred EcCccccCccchHHHHHHHHHHhh
Q 008480 485 VCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 485 vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+...=|.=|+|-.+|-+.++..+.
T Consensus 194 vv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 194 IIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCchhHHHHHHhhcc
Confidence 233346778999999988887764
No 310
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.02 E-value=15 Score=36.55 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|.+|.+.| |-|.|||||.--|+--+. .-+.+..
T Consensus 98 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~g~V~ 132 (302)
T 3b9q_A 98 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 132 (302)
T ss_dssp SSCEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4588999988 689999999998887773 4455544
No 311
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=48.92 E-value=20 Score=34.93 Aligned_cols=113 Identities=10% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCCCCccCCCCCcc------ccccccHHHHHHHH--hhHHHHHHHHhhc--CCcEEE--Eecc-cCCCcHHHHHHHHHHH
Q 008480 409 GGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKAY--GANVVV--AVNM-FATDSKAELNAVRNAA 475 (564)
Q Consensus 409 GG~~~~~~g~PLp~------~l~~eNl~aLe~G~--~NL~kHIeNi~~f--GvPvVV--AIN~-F~tDT~aEi~~v~~~~ 475 (564)
+|+.-..+|.|.-+ ....-+..+|+.|+ .++...++.+++. .+|+++ ..|. |....+. ..+.|
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~----f~~~~ 118 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEK----FCRLS 118 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHH----HHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHH----HHHHH
Confidence 45655556655532 23344566788887 4667888888884 899887 3352 2223233 23457
Q ss_pred HHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh
Q 008480 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 533 (564)
Q Consensus 476 ~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~ 533 (564)
.+.|+..+++.+.= .+-.+.+++.+.+..-.+-++...+.+. +.++.|++
T Consensus 119 ~~aG~dgvii~dl~-------~ee~~~~~~~~~~~gl~~i~l~~p~t~~-~rl~~ia~ 168 (262)
T 2ekc_A 119 REKGIDGFIVPDLP-------PEEAEELKAVMKKYVLSFVPLGAPTSTR-KRIKLICE 168 (262)
T ss_dssp HHTTCCEEECTTCC-------HHHHHHHHHHHHHTTCEECCEECTTCCH-HHHHHHHH
T ss_pred HHcCCCEEEECCCC-------HHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHH
Confidence 78899755554321 2335556666654211223444544443 45666665
No 312
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.80 E-value=16 Score=36.98 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=28.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
.+.|.+|.+.+- -|.|||||.-=|+--+. .-|.+..+.
T Consensus 126 ~~~g~vi~lvG~----nGaGKTTll~~Lag~l~-~~~g~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGF----NGSGKTTTIAKLANWLK-NHGFSVVIA 163 (328)
T ss_dssp SCSSEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence 356889998884 79999999998887773 556665443
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.62 E-value=16 Score=37.31 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.|++|+|+| |-|.|||||.--|..-+. .-+...+..+-+|
T Consensus 134 ~~g~~i~ivG----~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLILVTG----PTGSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEEEEC----SSSSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 5688999998 459999999988887774 4334445555544
No 314
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=48.23 E-value=11 Score=40.85 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|..|++|+. .|.||||++..|++.|+
T Consensus 394 ~~~~I~l~Gl----sGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNS----LTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTT----CCSCHHHHHHHHHHHHT
T ss_pred cceEEEeccc----CCCCHHHHHHHHHHHHH
Confidence 5778999987 49999999999999995
No 315
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=48.00 E-value=88 Score=29.42 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=61.1
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe--cccC-CCcHHHH----HHHHHHHHHcC-CCeEEEcCc--cccCcc
Q 008480 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAV--NMFA-TDSKAEL----NAVRNAAMAAG-AFDAVVCSH--HAHGGK 494 (564)
Q Consensus 425 ~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI--N~F~-tDT~aEi----~~v~~~~~~~G-~~~~~vs~~--wakGGe 494 (564)
..+|-+.-++.+..+++.|+..+.+|.+.||.. ..++ .++++.+ +.+++.|+.+. +. +++-++ |...--
T Consensus 101 ~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~v~-l~lEn~~~~~~~~~ 179 (290)
T 2zvr_A 101 THPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRGRREGRSYEETEELFIESMKRLLELTEHAK-FVIEPLNRYETDFI 179 (290)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSSCC-EEECCCCTTTCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCCCcCHHHHHHHHHHHHHHHHHHhccCE-EEEEeCCCcCcccc
Confidence 345656677888999999999999999999822 1122 2334443 34445554333 65 667665 211111
Q ss_pred chHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHh
Q 008480 495 GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 495 Ga~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA~ 533 (564)
...+-+.++++.+. +.++.+++|. ..++.+=|+....
T Consensus 180 ~~~~~~~~l~~~~~--~~~vgl~~D~~h~~~~g~d~~~~l~~~~~ 222 (290)
T 2zvr_A 180 NTIDDALRILRKIN--SNRVGILADTFHMNIEEVNIPESLKRAGE 222 (290)
T ss_dssp CSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSSHHHHHHHHGG
T ss_pred CCHHHHHHHHHHcC--CCCEEEEEehhHhhhcCCCHHHHHHHhhc
Confidence 23455556666664 2457777764 2345554555544
No 316
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=47.98 E-value=7.4 Score=44.18 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhc
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~l 101 (564)
|-|+|++ |-.|.||||+|.||.++|. +.
T Consensus 35 ~~l~I~g---t~s~vGKT~vt~gL~r~l~-~~ 62 (831)
T 4a0g_A 35 PTYLIWS---ANTSLGKTLVSTGIAASFL-LQ 62 (831)
T ss_dssp CEEEEEE---SSSSSCHHHHHHHHHHHHH-SC
T ss_pred ccEEEEE---CCCCCCHHHHHHHHHHHHH-hc
Confidence 4577776 5679999999999999994 66
No 317
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=47.97 E-value=43 Score=34.04 Aligned_cols=70 Identities=21% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCc-EEEEecccCCC-cHHHH----HHHHHHHHHcCCC----eEEEcCccc-cC------ccc-hHHHH
Q 008480 439 LARHIANTKAYGAN-VVVAVNMFATD-SKAEL----NAVRNAAMAAGAF----DAVVCSHHA-HG------GKG-AVDLG 500 (564)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAIN~F~tD-T~aEi----~~v~~~~~~~G~~----~~~vs~~wa-kG------GeG-a~eLA 500 (564)
...|++.++..|+| +||++|+-.-. .++.+ +.+++++++.|.. .++.+..+. .+ ++| -.+|-
T Consensus 107 t~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll 186 (397)
T 1d2e_A 107 TREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLL 186 (397)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHH
Confidence 45677778889999 68999998653 23322 3456677777741 255554443 11 235 56777
Q ss_pred HHHHHHhh
Q 008480 501 IAVQRACE 508 (564)
Q Consensus 501 ~~Vvea~e 508 (564)
+.+.+.+.
T Consensus 187 ~~l~~~~p 194 (397)
T 1d2e_A 187 DAVDTYIP 194 (397)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhCC
Confidence 77777554
No 318
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=47.97 E-value=15 Score=37.73 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCCcccccccCc-----eeeecc--hhhhhcc---CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 008480 31 ISEIAQELNLKPNHYDLYGKY-----KAKVLL--SVLDELE---GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (564)
Q Consensus 31 I~~ia~~lgl~~~~l~~YG~~-----kAKi~~--~~l~~~~---~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~ 100 (564)
|.+|-+++|-.. +.+.+.. ...|+. ..||++- .-+.|.+++|.+ |.|.||||++.-++..+ ..
T Consensus 15 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~G----ppGsGKSTLal~la~~~-~~ 87 (356)
T 3hr8_A 15 LKRIEENFGKGS--IMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFG----QESSGKTTLALHAIAEA-QK 87 (356)
T ss_dssp HHHHHHHHCTTS--SCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEE----STTSSHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCC--ceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEEC----CCCCCHHHHHHHHHHHH-Hh
Confidence 566777776532 2222221 123333 3455532 235799999998 68999999999998877 35
Q ss_pred cCCceEEEecCCCCC
Q 008480 101 LDKKVVTCLRQPSQG 115 (564)
Q Consensus 101 lgk~~~~~lRePSlG 115 (564)
.|.+++..=-|.+.-
T Consensus 88 ~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 88 MGGVAAFIDAEHALD 102 (356)
T ss_dssp TTCCEEEEESSCCCC
T ss_pred cCCeEEEEecccccc
Confidence 566654333344433
No 319
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=47.83 E-value=21 Score=34.51 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=50.4
Q ss_pred ceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHH
Q 008480 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRN 473 (564)
Q Consensus 394 ~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~ 473 (564)
|.|-+|.-+.++|-. - +++-.+++.++.+- ....++||++--- +. |++|+....+
T Consensus 86 devd~vinig~~~~g--~----------~~~v~~ei~~v~~a----------~~~~~lkvIlet~-~l--~~e~i~~a~~ 140 (220)
T 1ub3_A 86 DEVDMVLHLGRAKAG--D----------LDYLEAEVRAVREA----------VPQAVLKVILETG-YF--SPEEIARLAE 140 (220)
T ss_dssp SEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHH----------STTSEEEEECCGG-GS--CHHHHHHHHH
T ss_pred CEEEecccchhhhCC--C----------HHHHHHHHHHHHHH----------HcCCCceEEEecC-CC--CHHHHHHHHH
Confidence 778888888888632 1 22223333333322 2235677766543 33 4889999999
Q ss_pred HHHHcCCCeEEEcCccccCccchHH
Q 008480 474 AAMAAGAFDAVVCSHHAHGGKGAVD 498 (564)
Q Consensus 474 ~~~~~G~~~~~vs~~wakGGeGa~e 498 (564)
.|.++|+..+=.|+.|..||..-.+
T Consensus 141 ia~eaGADfVKTsTGf~~~gat~~d 165 (220)
T 1ub3_A 141 AAIRGGADFLKTSTGFGPRGASLED 165 (220)
T ss_dssp HHHHHTCSEEECCCSSSSCCCCHHH
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHH
Confidence 9999999733356679888766544
No 320
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=47.82 E-value=9.9 Score=35.88 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=20.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+..+-||++| |.|.||||++..+++.+
T Consensus 62 ~~~~~vLl~G----~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEG----PPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHh
Confidence 3345677776 67999999998888775
No 321
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=47.66 E-value=14 Score=40.08 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=27.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC-Cce
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKV 105 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lg-k~~ 105 (564)
.+|.+|++||+ .|.||||++--|.+.|+ ..| ..+
T Consensus 394 q~~~~I~l~Gl----sGSGKSTiA~~La~~L~-~~G~~~~ 428 (573)
T 1m8p_A 394 TQGFTIFLTGY----MNSGKDAIARALQVTLN-QQGGRSV 428 (573)
T ss_dssp TCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHCSSCE
T ss_pred ccceEEEeecC----CCCCHHHHHHHHHHHhc-ccCCceE
Confidence 35789999986 69999999999999995 556 443
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=47.20 E-value=12 Score=35.13 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.+|-+|| |-|.||||++--|+.-|
T Consensus 23 ~~g~iigI~G----~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSG----GTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4587887877 78999999988776655
No 323
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.02 E-value=12 Score=32.80 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+.|+++| |.|.||||++.-+++.+.
T Consensus 45 ~~~~ll~G----~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSG----TRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEEC----STTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 45888988 679999999998888774
No 324
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=46.67 E-value=1.4e+02 Score=29.05 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=65.7
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecc-c-----CCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 435 GCVNLARHIANTKAYGANVVVAVNM-F-----ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAIN~-F-----~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
-+.+..+.|+.++++|++|.+.|.. | .--+++++..+.+.+.+.|+..+.+++.. |. +.-+....+++.+.
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~--G~-~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTI--GR-GTPDTVAAMLDAVL 194 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETT--SC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCC--CC-cCHHHHHHHHHHHH
Confidence 3456677789999999999877764 4 12246666666666679999878888743 33 45555666666554
Q ss_pred cC-C-CC--CcccCCCCCCHHHHHHHHHh-HhCCCceeeC
Q 008480 509 NV-T-QP--LKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 543 (564)
Q Consensus 509 ~~-~-~~--fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S 543 (564)
+. + -+ ++...+..+.+.. .++- -.|++.|+-|
T Consensus 195 ~~~~~~~l~~H~Hn~~Gla~an---~l~Ai~aG~~~vd~s 231 (295)
T 1ydn_A 195 AIAPAHSLAGHYHDTGGRALDN---IRVSLEKGLRVFDAS 231 (295)
T ss_dssp TTSCGGGEEEEEBCTTSCHHHH---HHHHHHHTCCEEEEB
T ss_pred HhCCCCeEEEEECCCcchHHHH---HHHHHHhCCCEEEec
Confidence 32 2 12 4454466666653 4444 6788877765
No 325
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=46.38 E-value=17 Score=32.88 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q-aL~~~lgk~~~ 106 (564)
+.|.+++|+| |.|.||||.+.=++- ++ ...|+++.
T Consensus 28 ~~G~l~~i~G----~pG~GKT~l~l~~~~~~~-~~~~~~v~ 63 (251)
T 2zts_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIYKGA-EEYGEPGV 63 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHHHHH-HHHCCCEE
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCce
Confidence 5799999999 679999999877653 33 24466554
No 326
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=46.29 E-value=33 Score=33.01 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCcEE-EEec---ccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 008480 441 RHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (564)
Q Consensus 441 kHIeNi~~fGvPvV-VAIN---~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGG 493 (564)
+.++.+++.|+++| +.++ .+..+..+.++.+.++|.+.|.. +++.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 56888899999999 7777 56777888999999999999996 88887776554
No 327
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=46.29 E-value=12 Score=33.28 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
+-|+++| |.|.||||++..++..+. +-|..
T Consensus 55 ~~~~l~G----~~GtGKT~la~~i~~~~~-~~~~~ 84 (202)
T 2w58_A 55 KGLYLHG----SFGVGKTYLLAAIANELA-KRNVS 84 (202)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHHH-TTTCC
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 6788887 679999999999999884 44544
No 328
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=46.26 E-value=39 Score=34.31 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCC-cEEEEecccCCCcHHH----HHHHHHHHHH---cCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 439 LARHIANTKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 439 L~kHIeNi~~fGv-PvVVAIN~F~tDT~aE----i~~v~~~~~~---~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
...|+..++.+|+ |+||++|+..-.++++ ++.+++++++ .+++ ++.+.. +=|+|-.+|-+.+.+.+.
T Consensus 125 t~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA--~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISA--LHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBT--TTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeC--CCCCCHHHHHHHHHHhCC
Confidence 3456666667777 6899999987655544 3445555554 3454 444443 447888888888887664
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=45.72 E-value=8.1 Score=33.56 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|++|+. .|.||||++--|++.|+
T Consensus 9 ~i~l~G~----~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGF----MGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESC----TTSSHHHHHHHHHHHHT
T ss_pred eEEEECC----CCCCHHHHHHHHHHHhC
Confidence 6788875 79999999888877773
No 330
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=45.28 E-value=2.1e+02 Score=27.26 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=46.5
Q ss_pred hHHHHHHHHh-hcCCcEE-EEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 438 NLARHIANTK-AYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 438 NL~kHIeNi~-~fGvPvV-VAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
.+.+.++.++ +.+++++ |.+|++... +.++++++..|.+ +. ... .. -..+.++...+ +
T Consensus 199 ~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~~~~~~~~~g~~-v~-~~I-p~--------~~~v~~a~~~g----~ 258 (307)
T 3end_A 199 RIIAAVQAKSKNYKVRLAGCVANRSRAT-----DEVDRFCKETNFR-RL-AHM-PD--------LDAIRRSRLKK----K 258 (307)
T ss_dssp HHHHHHHTTTTTCCCEEEEEEEESCSCC-----HHHHHHHHHHTCC-EE-EEE-CC--------CHHHHHHHHTT----C
T ss_pred HHHHHHHHhhhcCCCceEEEEEecCCcH-----HHHHHHHHHcCCC-ce-eeC-Cc--------cHHHHHHHHcC----C
Confidence 3334444332 3678876 899999864 2355666677876 32 211 11 22344444432 3
Q ss_pred ccC--CCC---CCHHHHHHHHHh-HhCCCce
Q 008480 516 FLY--PLD---VSIKEKIDTIAR-SYGASGV 540 (564)
Q Consensus 516 ~LY--d~~---~~I~eKIetIA~-IYGA~~V 540 (564)
+++ ..+ .+..+-++.+|+ +.+....
T Consensus 259 ~v~~~~p~~~~s~~~~~~~~la~~l~~~~~~ 289 (307)
T 3end_A 259 TLFEMDEDQDVLAARAEYIRLAESLWRGLDP 289 (307)
T ss_dssp CTTTSCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CeEeeCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 333 333 457888999999 7765543
No 331
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=45.26 E-value=44 Score=31.13 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=59.6
Q ss_pred hhHHHHHHHHhhcCCcEEEEe-cccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 437 VNLARHIANTKAYGANVVVAV-NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAI-N~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
..+++.|+..+.+|.|.||.- -.++.+ .-+..+.+.+++.|+. +++-+|+..=+ +..+-+..+++.++...+++.
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~--~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~~~~~~~~ll~~v~~~~~~vg 159 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQ--PDLAALGRRLARHGLQ-LLVENDQTPQG-GRIEVLERFFRLAERQQLDLA 159 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSS--CCHHHHHHHHTTSSCE-EEEECCSSHHH-HCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcH--HHHHHHHHHHHhcCCE-EEEecCCCCCC-CCHHHHHHHHHHHHhcCCCeE
Confidence 578899999999999998753 233332 2677788888899996 77877753211 234445566776643222377
Q ss_pred ccCCC------CCCHHHHHHHHHh
Q 008480 516 FLYPL------DVSIKEKIDTIAR 533 (564)
Q Consensus 516 ~LYd~------~~~I~eKIetIA~ 533 (564)
++||. ..++.+=++....
T Consensus 160 ~~~D~g~~~~~~~d~~~~~~~~~~ 183 (264)
T 1yx1_A 160 MTFDIGNWRWQEQAADEAALRLGR 183 (264)
T ss_dssp EEEETTGGGGGTCCHHHHHHHHGG
T ss_pred EEEehhhhhhcCCCHHHHHHHhhh
Confidence 77776 2345555555544
No 332
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=45.20 E-value=54 Score=34.43 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCcEE-EEec---ccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccch
Q 008480 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (564)
Q Consensus 439 L~kHIeNi~~fGvPvV-VAIN---~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa 496 (564)
.++.|+.|+..|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|....
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~~~~ 101 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGYDSI 101 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTCCCH
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCCCCh
Confidence 3567889999999999 7776 57778889999999999999996 88887877766543
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.08 E-value=15 Score=34.74 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|+++.++| |.|.||||+.--|..-+
T Consensus 14 ~~G~ii~l~G----psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSA----PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 6799999998 89999999877665444
No 334
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=45.04 E-value=13 Score=30.88 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.7
Q ss_pred HhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 446 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
+++.++|+|+++|+-.-..+ -+.+++++ +.|...+..+. ++-|+|-.+|-+.+++.+
T Consensus 104 ~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-~~~~~~~~~~S--a~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 104 LRRKGKPVILVATKVDDPKH--ELYLGPLY-GLGFGDPIPTS--SEHARGLEELLEAIWERL 160 (161)
T ss_dssp HHHHTCCEEEEEECCCSGGG--GGGCGGGG-GGSSCSCEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEEECcccccc--hHhHHHHH-hCCCCCeEEEe--cccCCChHHHHHHHHHhC
Confidence 33478999999999654332 23345555 56763244333 677899888888777653
No 335
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=44.95 E-value=11 Score=36.54 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|+.|.++|. .|.||||++--|++.|+
T Consensus 48 g~~i~l~G~----~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM----MGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS----TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 888999985 69999999888887773
No 336
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=44.94 E-value=20 Score=34.13 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.++++.| |-|.||||++.-++..+
T Consensus 28 ~~G~i~~i~G----~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVS----PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 4589999998 67999999998887766
No 337
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=44.89 E-value=17 Score=41.13 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=24.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
+.+.+|+| |.|.|||||...+...|-..-+++.
T Consensus 371 ~~~~lI~G----ppGTGKT~ti~~~i~~l~~~~~~~i 403 (800)
T 2wjy_A 371 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPV 403 (800)
T ss_dssp SSEEEEEC----CTTSCHHHHHHHHHHHHHTTCSSCE
T ss_pred CCeEEEEc----CCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 45888887 8899999999999988842234443
No 338
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=44.78 E-value=28 Score=34.41 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=49.7
Q ss_pred ceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecc-cCCCcHHHHHHHH
Q 008480 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FATDSKAELNAVR 472 (564)
Q Consensus 394 ~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~-F~tDT~aEi~~v~ 472 (564)
|.+-+|--+.+||- |- +++-.+++.++.+-|. +.++=|.|.. |- |++|+....
T Consensus 110 dEIDmViNig~lk~--g~----------~~~v~~eI~~v~~a~~------------~~~lKVIlEt~~L--t~eei~~a~ 163 (239)
T 3ngj_A 110 EEVDMVINIGMVKA--KK----------YDDVEKDVKAVVDASG------------KALTKVIIECCYL--TNEEKVEVC 163 (239)
T ss_dssp SEEEEECCHHHHHT--TC----------HHHHHHHHHHHHHHHT------------TSEEEEECCGGGS--CHHHHHHHH
T ss_pred CEEEEEeehHHhcc--cc----------HHHHHHHHHHHHHHhc------------CCceEEEEecCCC--CHHHHHHHH
Confidence 67888888888872 21 2333444444444331 2233333332 33 678999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchHH
Q 008480 473 NAAMAAGAFDAVVCSHHAHGGKGAVD 498 (564)
Q Consensus 473 ~~~~~~G~~~~~vs~~wakGGeGa~e 498 (564)
+.|.++|+..+=.|+.|..||.--.+
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt~~d 189 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGATPED 189 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHHH
T ss_pred HHHHHHCcCEEECCCCCCCCCCCHHH
Confidence 99999999744467789988876544
No 339
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=44.63 E-value=1.2e+02 Score=31.57 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred EEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhh-cCCcEEEEecccCCCc----HHHHHH
Q 008480 396 AVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA-YGANVVVAVNMFATDS----KAELNA 470 (564)
Q Consensus 396 vVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~-fGvPvVVAIN~F~tDT----~aEi~~ 470 (564)
|+|=.+-.+.+|++|... +. .+|.++.-.|...+.+|+..+.+ |+|||++=+-+..+.. +.-++.
T Consensus 56 vIlq~s~g~~~~~~g~~~-------~~---~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~~~~~i~~~i~a 125 (358)
T 1dos_A 56 VIVQFSNGGASFIAGKGV-------KS---DVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDA 125 (358)
T ss_dssp EEEEECHHHHHHHHCTTS-------CC---CSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHH
T ss_pred EEEECChhHHHHhcCCCc-------cc---cchhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHH
Confidence 444444455888865432 01 14668888998888889888765 9999988888876642 333445
Q ss_pred HHHHHHHcCCCeEEEcCccccCc----cchHHHHHHHHHHhh
Q 008480 471 VRNAAMAAGAFDAVVCSHHAHGG----KGAVDLGIAVQRACE 508 (564)
Q Consensus 471 v~~~~~~~G~~~~~vs~~wakGG----eGa~eLA~~Vvea~e 508 (564)
.+++|++.|-. -.+.|--||. |=-+++.++|++.|.
T Consensus 126 ~~~~~~~~~~~--gFtSVMiDgS~~p~eENI~~Tkevv~~ah 165 (358)
T 1dos_A 126 GEKHFAATGKP--LFSSHMIDLSEESLQENIEICSKYLERMS 165 (358)
T ss_dssp HHHHHHHHSSC--SCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccC--CCceEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 55667766521 1223333333 344668889998875
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.47 E-value=9.8 Score=33.68 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=18.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
|++|+++| |-|.||||+.--|++.
T Consensus 2 g~ii~l~G----~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITG----PAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEEC----STTSSHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCcHHHHHHHHhcc
Confidence 45677776 5799999988888653
No 341
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=44.43 E-value=43 Score=30.17 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCcEEEEecccCCCcHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchHHHHHHHHHHh
Q 008480 450 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 507 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~vs~~wak-GGeGa~eLA~~Vvea~ 507 (564)
++|+|++.|+..-..+. ..+..++++++.|...+..+ =++ .|+|-.+|-+.+++.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC--SALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe--eeccCCcCHHHHHHHHHHHH
Confidence 79999999997653211 12345677887774324433 355 7888888888777665
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=44.41 E-value=14 Score=32.34 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
| +.++++ |-|.||||+.-.|.-+|
T Consensus 27 g-~~~i~G----~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 G-FTAIVG----ANGSGKSNIGDAILFVL 50 (182)
T ss_dssp S-EEEEEE----CTTSSHHHHHHHHHHHT
T ss_pred C-cEEEEC----CCCCCHHHHHHHHHHHH
Confidence 5 788888 77999999877776666
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.40 E-value=13 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
..++.|+++| |-|.||||.+-=|++-+
T Consensus 27 ~~~~~I~l~G----~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLG----APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 3578899998 56999999888887766
No 344
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=44.17 E-value=43 Score=28.81 Aligned_cols=58 Identities=14% Similarity=-0.021 Sum_probs=35.9
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~-----~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+|+++|+..-..+.+.+.+.+... ..+.. + -..=++-|+|-.+|-+.+++.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR-I--QGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-E--EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE-E--EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999976543323333333322 12332 2 233466789999999998888753
No 345
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=43.99 E-value=14 Score=38.23 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
++-|+|-|||.| |||||+-=|.+.| ...|+++-
T Consensus 50 ~~~~vI~VtGTN------GKgSt~~~l~~iL-~~~G~~vg 82 (437)
T 3nrs_A 50 PAPKIFTVAGTN------GKGTTCCTLEAIL-LAAGLRVG 82 (437)
T ss_dssp SSSEEEEEECSS------SHHHHHHHHHHHH-HHTTCCEE
T ss_pred ccCCEEEEECCc------ChHHHHHHHHHHH-HHCCCcEE
Confidence 457899999987 9999999999999 47798863
No 346
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=43.94 E-value=23 Score=32.83 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCccc
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 517 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~L 517 (564)
.+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-+|...---...+ .+.+.++..+.++.+.
T Consensus 92 ~~~~~i~~A~~lGa~~v~~~---~~--~~~~~~l~~~a~~~gv~-l~~En~~~~~~~~~~~---~~~~ll~~~~~~~g~~ 162 (262)
T 3p6l_A 92 DWEKMFKFAKAMDLEFITCE---PA--LSDWDLVEKLSKQYNIK-ISVHNHPQPSDYWKPE---NLLKAISGRSQSLGSC 162 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEC---CC--GGGHHHHHHHHHHHTCE-EEEECCSSSSSSSSHH---HHHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEec---CC--HHHHHHHHHHHHHhCCE-EEEEeCCCccccCCHH---HHHHHHHhCCCceEEE
Confidence 57889999999999999873 32 46788889999999996 7787775321101222 3333333223457766
Q ss_pred CCC
Q 008480 518 YPL 520 (564)
Q Consensus 518 Yd~ 520 (564)
||.
T Consensus 163 ~D~ 165 (262)
T 3p6l_A 163 SDV 165 (262)
T ss_dssp EEH
T ss_pred ech
Confidence 653
No 347
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=43.77 E-value=12 Score=40.60 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=25.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEE
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~ 108 (564)
+-||.| |.|.|||||.+-+...|- +-|++..+|
T Consensus 207 ~~lI~G----PPGTGKT~ti~~~I~~l~-~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHG----PPGTGKTTTVVEIILQAV-KQGLKVLCC 239 (646)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ceEEEC----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 777777 799999999999888883 667665544
No 348
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=43.74 E-value=13 Score=33.07 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+.|.+++++| |.|.||||++.-|+-
T Consensus 18 ~~G~~~~i~G----~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYG----PYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEEC----STTSSHHHHHHHHHH
T ss_pred cCCEEEEEEC----CCCCCHHHHHHHHHH
Confidence 6799999988 689999999877765
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=43.55 E-value=20 Score=36.36 Aligned_cols=43 Identities=33% Similarity=0.302 Sum_probs=28.2
Q ss_pred EEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 008480 73 VVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (564)
Q Consensus 73 lVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNL 140 (564)
+|++|. =|-|.||||++--|..-|. . .| ++|...+++||++.+
T Consensus 93 ~iigI~-GpsGSGKSTl~~~L~~ll~-~----------~~-------------~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 93 YIIGIA-GSVAVGKSTTSRVLKALLS-R----------WP-------------DHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHT-T----------ST-------------TCCCEEEEEGGGGBC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHhc-c----------cC-------------CCCeEEEEeeccccc
Confidence 334443 4789999999877765552 1 12 245578899998764
No 350
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=43.51 E-value=17 Score=37.16 Aligned_cols=32 Identities=31% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|.|-|||.+ |||||+-=|.+.| ...|+++.
T Consensus 48 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~~g 79 (422)
T 1w78_A 48 APFVFTVAGTN------GKGTTCRTLESIL-MAAGYKVG 79 (422)
T ss_dssp SSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCcEEEEeCCc------ChHHHHHHHHHHH-HHCCCCEE
Confidence 46789999986 9999999999999 47898864
No 351
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=43.46 E-value=9.7 Score=38.87 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.++|+|+| |.|.||||++.-|++.++
T Consensus 5 ~~~i~i~G----ptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMG----PTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 35788887 469999999999988773
No 352
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=43.33 E-value=33 Score=34.95 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCC-cEEEEecccCCCcH----HHHHHHHHHHHHc---CCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 440 ARHIANTKAYGA-NVVVAVNMFATDSK----AELNAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 440 ~kHIeNi~~fGv-PvVVAIN~F~tDT~----aEi~~v~~~~~~~---G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
..|+..++.+|+ |+||++|+-.-.++ +..+.+++++++. +++ ++.+. ++=|+|-.+|-+.+.+.+..
T Consensus 124 ~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vS--A~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 124 KEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP-IIPIS--AHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC-EEEC--------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe-EEEee--CCCCCCHHHHHHHHHHhCCC
Confidence 356666677787 68999999765332 2345566776642 444 44444 44578888888888876643
No 353
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=42.79 E-value=12 Score=34.03 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
+.|.++++.+ |.|.||||+..-|+-.
T Consensus 22 ~~G~~~~i~G----~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFG----EFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEEC----CTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEC----CCCCcHHHHHHHHHHH
Confidence 5689999988 7799999998877653
No 354
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=42.68 E-value=48 Score=34.40 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcH---HHHHHHHHHHHHcCCCeEEEcC-ccccCccchHHHHHHHHHHh
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSK---AELNAVRNAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~---aEi~~v~~~~~~~G~~~~~vs~-~wakGGeGa~eLA~~Vvea~ 507 (564)
-+++||+-++.+||-+ +|+|.|..|.. .-++.+.+.+++.|.. +..+- .|. |.....+.+.|...+
T Consensus 105 v~~~h~~~Ak~aGIDg-f~l~w~~~~~~~d~~~l~~~l~aA~~~~~k-~~f~~~~~~--~~~~~~~~~di~~li 174 (380)
T 4ad1_A 105 ILTKHMDMFVMARTGV-LALTWWNEQDETEAKRIGLILDAADKKKIK-VCFHLEPYP--SRNVQNLRENIVKLI 174 (380)
T ss_dssp HHHHHHHHHHHHTEEE-EEEEECCCCSHHHHHHHHHHHHHHHHTTCE-EEEEECCCT--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCE-EEEEecCCCCcccHHHHHHHHHHHHHcCCe-EEEEECCCC--CCChHHHHHHHHHHH
Confidence 5789999999999996 68999987744 4466777778888885 55543 343 333445555555554
No 355
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=42.58 E-value=2e+02 Score=29.35 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=56.5
Q ss_pred HHhhHHHHHHHH--hhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCc---cccCcc---chHHHHHHHHHH
Q 008480 435 GCVNLARHIANT--KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH---HAHGGK---GAVDLGIAVQRA 506 (564)
Q Consensus 435 G~~NL~kHIeNi--~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~---wakGGe---Ga~eLA~~Vvea 506 (564)
|+..+.+++... +.++.|++|=|+ .++.+|.....+.+++.|+.+++.-+. -.+||. ...++..+++++
T Consensus 111 G~~~~~~~l~~~~~~~~~~pvivsI~---g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~a 187 (345)
T 3oix_A 111 GINYYLDYVTELQKQPDSKNHFLSLV---GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSE 187 (345)
T ss_dssp CHHHHHHHHHHHHHSTTCCCCEEEEC---CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEec---CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHH
Confidence 344444555543 247889887775 356777777777777778753433232 234543 123667788887
Q ss_pred hhcCCCCCcccC---CCCCCHHHHHHHHHhHhCCCcee
Q 008480 507 CENVTQPLKFLY---PLDVSIKEKIDTIARSYGASGVE 541 (564)
Q Consensus 507 ~e~~~~~fk~LY---d~~~~I~eKIetIA~IYGA~~V~ 541 (564)
+.+. .+ .|++ ..+.++ +.+..+|..-|+++|.
T Consensus 188 v~~~-~~-~PV~vKi~p~~~~-~~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 188 VFTY-FT-KPLGIKLPPYFDI-VHFDQAAAIFNXYPLT 222 (345)
T ss_dssp HTTT-CC-SCEEEEECCCCCH-HHHHHHHHHHTTSCCS
T ss_pred HHHH-hC-CCeEEEECCCCCH-HHHHHHHHHhCCCceE
Confidence 7542 11 1222 112344 3466677766888775
No 356
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=42.24 E-value=78 Score=26.64 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHhhcCCcEEEEecccCCCc--HHHHHHHHHHHHHcCCC------eEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 442 HIANTKAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 442 HIeNi~~fGvPvVVAIN~F~tDT--~aEi~~v~~~~~~~G~~------~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
+++.+...++|+++++|+..-.. .+++ .+..++.+.. .+-+-..=++=|+|-.+|-+.+++.++.
T Consensus 99 ~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 99 AINHAKAANVPIIVAINKMDKPEANPDRV---MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHGGGSCCEEEEEETTTSSCSCHHHH---HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEECccCCcCCHHHH---HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 34556678999999999976432 2333 2233322210 0122233367789999999999888764
No 357
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=42.24 E-value=18 Score=37.51 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
++.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 112 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 142 (451)
T 3lk7_A 112 SQLIGITGSN------GKTTTTTMIAEVL-NAGGQRGL 142 (451)
T ss_dssp SEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 5899999875 9999999999999 58898764
No 358
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=42.10 E-value=18 Score=36.71 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=27.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|.++++.+ |-|.||||++.-++..+. +-|.++.
T Consensus 59 ~~G~iv~I~G----~pGsGKTtLal~la~~~~-~~g~~vl 93 (349)
T 2zr9_A 59 PRGRVIEIYG----PESSGKTTVALHAVANAQ-AAGGIAA 93 (349)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeEE
Confidence 5799999997 679999999999987773 5454443
No 359
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=42.10 E-value=26 Score=37.72 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
++.+.++.+++|+++++|+..-......+.+.++.+..|..
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 45566778999999999997654444444566666667764
No 360
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=41.97 E-value=21 Score=36.71 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.|.+|.+.+ |-|.|||||.--|+--+. .-+.+..
T Consensus 155 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~G~V~ 189 (359)
T 2og2_A 155 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 189 (359)
T ss_dssp SSSEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCeEEEEEc----CCCChHHHHHHHHHhhcc-ccCCEEE
Confidence 4588999988 689999999988887773 4455544
No 361
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=41.91 E-value=45 Score=30.71 Aligned_cols=60 Identities=18% Similarity=0.057 Sum_probs=38.0
Q ss_pred HhhcCCcEEEEecccCCCcHHHHHHHHHHH----------------------------HHcCC--CeEEEcCccccCccc
Q 008480 446 TKAYGANVVVAVNMFATDSKAELNAVRNAA----------------------------MAAGA--FDAVVCSHHAHGGKG 495 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aEi~~v~~~~----------------------------~~~G~--~~~~vs~~wakGGeG 495 (564)
....++|+++++|+....+..+++.+++++ ++.+. . +... =++-|+|
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~--SA~~~~g 243 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVR-VLYL--SAKTREG 243 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCC-CEEC--CTTTCTT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCccc-ceEE--EecCccc
Confidence 345689999999999887776655444432 22222 2 2222 2667788
Q ss_pred hHHHHHHHHHHhh
Q 008480 496 AVDLGIAVQRACE 508 (564)
Q Consensus 496 a~eLA~~Vvea~e 508 (564)
-.+|-+.+.+...
T Consensus 244 i~~l~~~i~~~~~ 256 (262)
T 1yrb_A 244 FEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8887777776654
No 362
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.86 E-value=9.2 Score=34.02 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=17.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIG 92 (564)
+.|.++.+.| |-|.||||+.--
T Consensus 7 ~~gei~~l~G----~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIG----SSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEEC----CTTSCHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHH
Confidence 4588998888 679999998654
No 363
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=41.78 E-value=35 Score=35.37 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCCCc----HHHH----HHHHHHHHHcCCC-----eEEEcCccccCccchHHHH
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAEL----NAVRNAAMAAGAF-----DAVVCSHHAHGGKGAVDLG 500 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~tDT----~aEi----~~v~~~~~~~G~~-----~~~vs~~wakGGeGa~eLA 500 (564)
....|+..++..|+| +||++|+-.-.+ ++.. +.+.+++++.|.. .++.+. |.=|+|-.+|-
T Consensus 142 qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iS--A~~G~ni~~l~ 216 (439)
T 3j2k_7 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCS--GLTGANLKEQS 216 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEee--ccCCccccccc
Confidence 456889999999999 999999976421 2223 3344555666652 133333 44566666643
No 364
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=41.77 E-value=50 Score=30.54 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=38.0
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
-++|+|++.|+..-..+.+ .+..+.++...++. +..+ =|+=|+|-.+|-+.+++.+.
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~--SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIET--SAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 4899999999975432111 22334567777774 4433 36778999998888887664
No 365
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=41.54 E-value=58 Score=29.56 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=66.7
Q ss_pred CCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHH
Q 008480 363 GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARH 442 (564)
Q Consensus 363 ~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kH 442 (564)
-||||=+.+-+.+.-..-.+. .-|.+|+|++-. . ..+..+.+.
T Consensus 119 yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~~~-------------------------~----~~~~~~~~~ 161 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLE--------HLDELCIVTTPS-------------------------L----QSLRRAGQL 161 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGG--------GCSEEEEEECSS-------------------------H----HHHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHH--------HCCEEEEEecCc-------------------------H----HHHHHHHHH
Confidence 499999887665433222221 247788887332 1 112244555
Q ss_pred HHHHhhcCCc---EEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCC
Q 008480 443 IANTKAYGAN---VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (564)
Q Consensus 443 IeNi~~fGvP---vVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd 519 (564)
++.+++++.| +-+.+|++...+....+.++ +..|.+ +...-.+. -+.+.++.... .--+.|.
T Consensus 162 ~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~---~~~~~~-v~~~ip~~---------~~~~~~a~~~g--~~v~~~~ 226 (245)
T 3ea0_A 162 LKLCKEFEKPISRIEIILNRADTNSRITSDEIE---KVIGRP-ISKRIPQD---------EDAMQESLLSG--QSVLKVA 226 (245)
T ss_dssp HHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHH---HHHTSC-EEEEECCC---------HHHHHHHHHHT--SCHHHHC
T ss_pred HHHHHHhCCCccceEEEEecCCCCCCCCHHHHH---HHhCCC-eEEECCCC---------hHHHHHHHHcC--CCccccC
Confidence 6666677643 77899999877654333333 345765 32221111 12344444432 1223455
Q ss_pred CCCCHHHHHHHHHh-HhC
Q 008480 520 LDVSIKEKIDTIAR-SYG 536 (564)
Q Consensus 520 ~~~~I~eKIetIA~-IYG 536 (564)
.+.+..+-++.+|+ +-|
T Consensus 227 ~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 227 PKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp TTSHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 66778888888887 644
No 366
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=41.52 E-value=10 Score=32.10 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..++-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~~ll~G----~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIG----EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3456788887 679999999999999984
No 367
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=41.39 E-value=10 Score=33.60 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+|.+|+ |.|.||||++--|++.|
T Consensus 4 ~i~i~G----~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDG----PSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHhc
Confidence 677776 57999999988887766
No 368
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=41.28 E-value=59 Score=32.79 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh-----hcCCceEEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~-----~lgk~~~~~ 108 (564)
..+|.|.|++ ..-|+||||||..|+.+|.. +.|+++.+.
T Consensus 109 ~~~~vIav~s---~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 109 KSPYVIFVVN---LKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CSCEEEEECC---C--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CCceEEEEEc---CCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 4577887665 46799999999999999942 478987765
No 369
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=41.21 E-value=21 Score=40.46 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=25.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.+.+|.| |.|.|||||...+...|-..-+++..+
T Consensus 375 ~~~~lI~G----ppGTGKT~~i~~~i~~l~~~~~~~ILv 409 (802)
T 2xzl_A 375 RPLSLIQG----PPGTGKTVTSATIVYHLSKIHKDRILV 409 (802)
T ss_dssp CSEEEEEC----STTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCEEEEC----CCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 45888888 899999999999887773223444433
No 370
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=41.19 E-value=52 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHhhc--CCcEEEEecccCCCc-HHH-------------HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 443 IANTKAY--GANVVVAVNMFATDS-KAE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT-~aE-------------i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
++.++.+ ++|+|+++|+..-.. ... .+...+++++.|...+..+. ++-|+|-.+|-+.+++.
T Consensus 250 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 250 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec--CCCCcCHHHHHHHHHHH
Confidence 3444444 899999999975311 111 23456678878873244333 56678888888887776
Q ss_pred hh
Q 008480 507 CE 508 (564)
Q Consensus 507 ~e 508 (564)
+-
T Consensus 328 ~~ 329 (332)
T 2wkq_A 328 VL 329 (332)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=40.87 E-value=45 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=17.1
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNA 474 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~ 474 (564)
.++|++|++|+..-..+.+++.+.+.
T Consensus 155 ~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 155 NGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp TCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred cCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 58999999999765444444444333
No 372
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=40.73 E-value=1e+02 Score=29.47 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEec-c--------cCCC----cHHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 008480 431 LVEAGCVNLARHIANTKAYGANVVVAVN-M--------FATD----SKAE-------LNAVRNAAMAAGAFDAVVCSHHA 490 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi~~fGvPvVVAIN-~--------F~tD----T~aE-------i~~v~~~~~~~G~~~~~vs~~wa 490 (564)
.-++.+..+++.|+..+.+|.+.||..- . |+.. +++. ++.+.+.|++.|+. +++-+++.
T Consensus 105 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 183 (340)
T 2zds_A 105 VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVR-FAHEVHPS 183 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence 3566778999999999999999998742 1 1111 2222 33444567778996 77877765
Q ss_pred cCccchHHHHHHHHHHhhcCCCCCcccCCCC------CCHHHHHHHHHh
Q 008480 491 HGGKGAVDLGIAVQRACENVTQPLKFLYPLD------VSIKEKIDTIAR 533 (564)
Q Consensus 491 kGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~------~~I~eKIetIA~ 533 (564)
.... ..+-+.++++.+.. +.++.++||.- .++.+=|+....
T Consensus 184 ~~~~-~~~~~~~ll~~v~~-~~~vg~~~D~~H~~~~g~d~~~~l~~~~~ 230 (340)
T 2zds_A 184 EIAY-DYWTTHRALEAVGH-RPAFGLNFDPSHFVWQDLDPVGFLWDFRD 230 (340)
T ss_dssp SSCC-SHHHHHHHHHHTTT-CTTEEEEECCHHHHHTTCCHHHHHHHTGG
T ss_pred cccC-CHHHHHHHHHhcCC-CCCeeEEEchhhHHHhCCCHHHHHHHHHh
Confidence 4433 33334566666641 23577777653 355555555544
No 373
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=40.64 E-value=46 Score=34.37 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCcEEEEecccCCC--cHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 441 RHIANTKAYGANVVVAVNMFATD--SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 441 kHIeNi~~fGvPvVVAIN~F~tD--T~aEi~~v~~~~~~~-----G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++++.+...|.|+|+++|+..-. .+...+.+++++++. +++ ++.+. |+-|+|-.+|-+.+.+.+.+
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC-EEEEc--CCCCcCHHHHHHHHHHHHHH
Confidence 44555666899999999998643 233344455555543 455 44433 56688988888888887754
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.62 E-value=22 Score=37.24 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=29.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
..|.+|+|+| |-|.|||||.-.|..-++ .- ...+..+=+|
T Consensus 165 ~~ggii~I~G----pnGSGKTTlL~allg~l~-~~-~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTG----PTGSGKSTTLYAGLQELN-SS-ERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEEC----STTSCHHHHHHHHHHHHC-CT-TSCEEEEESS
T ss_pred hcCCeEEEEC----CCCCCHHHHHHHHHhhcC-CC-CCEEEEeccc
Confidence 4578999998 669999999998888774 32 3345555555
No 375
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=40.54 E-value=56 Score=29.66 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=42.5
Q ss_pred HHHHhhc--CCcEEEEecccCCCc-----HHHHHHHHHHHHHcC--CCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 443 IANTKAY--GANVVVAVNMFATDS-----KAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 443 IeNi~~f--GvPvVVAIN~F~tDT-----~aEi~~v~~~~~~~G--~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.++.. ++|+|+++|+-.-.. +++.+.+.+++...| .. +. ..=++-|+|-.+|-+.+++.+.
T Consensus 133 ~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 133 FYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK-FS--SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE-EE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce-EE--EEecccCCCHHHHHHHHHHHHH
Confidence 4555555 899999999975432 233346677777776 43 33 3446778998888888877764
No 376
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.50 E-value=28 Score=31.53 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+.|.++.+.| |-|.||||+..-|+.
T Consensus 28 ~~G~~~~l~G----pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHH
Confidence 5699999987 679999999887763
No 377
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=40.24 E-value=24 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FG 119 (564)
..|++.+.|| |-|.||||-.++++.-. ...|+++.+ =+|+.+.-+|
T Consensus 17 ~~g~l~v~~G----~MgsGKTT~lL~~~~r~-~~~g~kvli--~kp~~D~Ryg 62 (234)
T 2orv_A 17 TRGQIQVILG----PMFSGKSTELMRRVRRF-QIAQYKCLV--IKYAKDTRYS 62 (234)
T ss_dssp -CCEEEEEEC----CTTSCHHHHHHHHHHHH-HTTTCCEEE--EEETTCCCC-
T ss_pred CceEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCeEEE--EeecCCccch
Confidence 4599999987 67999999999998766 355777654 3588775554
No 378
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=40.19 E-value=22 Score=38.45 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=27.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
.+.+|++|+. -|.||||++--|.+.|+ ..|+.+
T Consensus 371 ~~~~I~l~G~----~GsGKSTia~~La~~L~-~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGL----PCAGKSTIAEILATMLQ-ARGRKV 403 (546)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred cceEEEccCC----CCCCHHHHHHHHHHHhh-hcCCeE
Confidence 4778999985 79999999999999995 556554
No 379
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=40.04 E-value=9.1 Score=32.64 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
...+-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~vll~G----~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLG----DPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEES----CGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3456778887 679999999999999984
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=39.97 E-value=17 Score=32.00 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=16.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
.++|.+|+. .|.||||++--|+
T Consensus 8 ~~~I~i~G~----~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGN----IGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEEC----TTSCHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHH
Confidence 467888884 7999999765554
No 381
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=39.92 E-value=76 Score=32.24 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCcEE-EEec---ccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 008480 440 ARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (564)
Q Consensus 440 ~kHIeNi~~fGvPvV-VAIN---~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeG 495 (564)
.+.|+.+++.|.++| +.++ .|..|.-+.++.+.++|.+.|+. +++.-|...|++.
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~~~ 115 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGRDS 115 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 468899999999988 4554 46678889999999999999996 8888887777654
No 382
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=39.82 E-value=75 Score=27.70 Aligned_cols=57 Identities=16% Similarity=0.001 Sum_probs=37.2
Q ss_pred CCcEEEEecccCCCcHH--------------HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 450 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~a--------------Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++|+|+++|+..-..+. ..+...++++..+...+..+ =++=|+|-.+|-+.+++.+.
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC--SALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE--ecCCCCCHHHHHHHHHHHHh
Confidence 89999999997543211 12345667777776324433 35667888888887777654
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=39.78 E-value=26 Score=31.42 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=39.1
Q ss_pred cCCcEEEEecccCCCcH--HHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~--aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.|++|++|+..-... .+++.+.+++++.+.. +-+-..-++=|+|-.+|-+.+.+.+.
T Consensus 153 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 153 FRVADLIVINKVALAEAVGADVEKMKADAKLINPR-AKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTT-SEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCC-CeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 46899999999854322 2466667777765432 22334456678998888888877664
No 384
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=39.65 E-value=17 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAGTH------GKTTTASMLAWVL-EYAGLAPG 138 (326)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 5688888876 9999999999999 58898753
No 385
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=39.63 E-value=21 Score=34.73 Aligned_cols=28 Identities=39% Similarity=0.714 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..|+-||++| |.|.||||++..+++.++
T Consensus 68 ~~~~~vLl~G----ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAG----QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 3467899998 679999999999988883
No 386
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.55 E-value=12 Score=32.30 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.|++|+. -|.||||.+--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF----MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC----TTSCHHHHHHHHHHHH
T ss_pred eEEEECC----CCCCHHHHHHHHHHHh
Confidence 4677774 6999999988887766
No 387
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=39.29 E-value=2.1e+02 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=29.7
Q ss_pred HhhHHHHHHHHhhcCCcEEEEe----cccC-----CCcHHHH----HHHHHHHHHcCCC
Q 008480 436 CVNLARHIANTKAYGANVVVAV----NMFA-----TDSKAEL----NAVRNAAMAAGAF 481 (564)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAI----N~F~-----tDT~aEi----~~v~~~~~~~G~~ 481 (564)
..||.+-|+.++.-+.++|+.- +.++ .+..+.+ ++++++|++.|+.
T Consensus 104 ~~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~ 162 (209)
T 4hf7_A 104 FGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIP 162 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCe
Confidence 3477777888888888877652 2222 2334444 3467888888986
No 388
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=39.12 E-value=17 Score=34.80 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
+|+=||.|+ |.|.||||++..|.+.
T Consensus 15 ~G~gvli~G----~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITG----EANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHHc
Confidence 477788887 7899999999999763
No 389
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=39.10 E-value=26 Score=34.27 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCcccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGi 120 (564)
..|.+.++|+ |-|.||||..++++.-+ ..-|+++ .+=+|.+.--+|-
T Consensus 26 ~~G~I~vitG----~M~sGKTT~Llr~~~r~-~~~g~kv--li~kp~~D~R~~~ 72 (219)
T 3e2i_A 26 HSGWIECITG----SMFSGKSEELIRRLRRG-IYAKQKV--VVFKPAIDDRYHK 72 (219)
T ss_dssp -CCEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCE--EEEEEC-------
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCce--EEEEeccCCcchh
Confidence 5699999998 57999999999998777 3557775 4567777766554
No 390
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=38.97 E-value=15 Score=34.15 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=18.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
+.|+++.+.| |-|.||||+.--|+
T Consensus 21 ~~G~~~~lvG----psGsGKSTLl~~L~ 44 (218)
T 1z6g_A 21 NNIYPLVICG----PSGVGKGTLIKKLL 44 (218)
T ss_dssp -CCCCEEEEC----STTSSHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHH
Confidence 4588888887 88999999776554
No 391
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=38.59 E-value=71 Score=29.65 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=51.9
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHH----HcCCCeEEEcCccccCcc-c-hHHHHH
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM----AAGAFDAVVCSHHAHGGK-G-AVDLGI 501 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~----~~G~~~~~vs~~wakGGe-G-a~eLA~ 501 (564)
|-+..++.+..+.++|+-.+.+|.++||.-=-+. +.+.=++.+++.++ +.|+. +++-+++..|.. + ..+-+.
T Consensus 79 ~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~~~~~~~l~~l~~~a~~~~gv~-l~lEn~~~~~~~~~~~~~~~~ 156 (270)
T 3aam_A 79 EGELWEKSVASLADDLEKAALLGVEYVVVHPGSG-RPERVKEGALKALRLAGVRSRPV-LLVENTAGGGEKVGARFEELA 156 (270)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CHHHHHHHHHHHHHHHTCCSSSE-EEEECCCCCTTBSCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHHHHHhhcccCCCE-EEEecCCCCCCccCCCHHHHH
Confidence 3356778899999999999999999987532222 21333444444443 46885 888888655433 2 344444
Q ss_pred HHHHHhhcCCCCCcccCC
Q 008480 502 AVQRACENVTQPLKFLYP 519 (564)
Q Consensus 502 ~Vvea~e~~~~~fk~LYd 519 (564)
++++.+ ++.++||
T Consensus 157 ~l~~~v-----~vg~~lD 169 (270)
T 3aam_A 157 WLVADT-----PLQVCLD 169 (270)
T ss_dssp HHHTTS-----SCEEEEE
T ss_pred HHHHhC-----CEEEEEe
Confidence 444433 4555553
No 392
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=38.38 E-value=18 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
++-|+++| |.|.|||+++.+++..+..+-|.++
T Consensus 152 ~~~lll~G----~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 152 QKGLYLYG----DMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp CCEEEEEC----STTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 56777877 7899999999999999931556654
No 393
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=38.28 E-value=20 Score=35.36 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.+.+|.|+| |.|.||||++--|..-|.
T Consensus 29 ~~~~ii~I~G----~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSG----PQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4567888887 679999999999988884
No 394
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.85 E-value=38 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..+..|+++| |.|.||||++.-+++.+.
T Consensus 43 ~~~~~vli~G----~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYG----LTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4577899998 579999999998888874
No 395
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=37.77 E-value=7.9 Score=39.62 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.0
Q ss_pred Eecccc-------chhcccCchHHHHHHHHhhc
Q 008480 335 VHAGPF-------ANIAHGNSSIVADKIALKLV 360 (564)
Q Consensus 335 vHgGPF-------ANIAhG~nSiiAtk~ALkla 360 (564)
-||||| .++.||.+|.-+=.-|+++|
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 599999 89999999998888887776
No 396
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=37.75 E-value=42 Score=29.88 Aligned_cols=57 Identities=11% Similarity=-0.069 Sum_probs=31.3
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHHHcC--------------CCeEEEcCccccCccchHHHHHHHHH
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAG--------------AFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G--------------~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
.++|+|++.|+-.-..+...+.+++++.... ...+-+-+.=|+-|+|-.+|-+.+.+
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999965432111223345544221 11122333446777887777666654
No 397
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=37.60 E-value=52 Score=27.35 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=32.9
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~~-----~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+|+++|+..-..+.+.+.+.+... +.+.. +. +.=++-|+|-.+|-+.+++.+.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY-IQ--ATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE-EE--ECBTTTTBTHHHHHHHHHHHC-
T ss_pred cCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEE-EE--EcccCCCcCHHHHHHHHHHHHh
Confidence 4899999999976543322222222211 11222 22 3336778898888888887664
No 398
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=37.60 E-value=32 Score=34.31 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+.|.+|.+.| |-|.||||++--|+.-+
T Consensus 87 ~~~g~ivgI~G----~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAG----SVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC----CCCchHHHHHHHHHhhc
Confidence 35688888887 67999999998887666
No 399
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=37.54 E-value=48 Score=28.24 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=38.1
Q ss_pred hHHHHHHHHh----hcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC--eEEEcCccccCccchHHHHHHHHHHhh
Q 008480 438 NLARHIANTK----AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 438 NL~kHIeNi~----~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~--~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+.+..+. ..++|+|+++|+-.-..+.+.+.+.+........ .+-+-..=++-|+|-.+|-+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 3344444444 3689999999997643221222233332211111 111222336678888888888877664
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=37.53 E-value=43 Score=31.94 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.++++.| |-|.||||+..-|+-.+
T Consensus 33 ~~G~~~~i~G----~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTS----GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 5699999998 67999999988877666
No 401
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=37.44 E-value=67 Score=32.60 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=65.7
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcC
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v-------~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~ 510 (564)
+|++=|+..++|||+| |+..|-.|+.+. .++|++.|+..+-+|+.+-+=. -.++.+.|-++.
T Consensus 81 ~l~ekI~l~~~~gV~v------~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~--~~~~~~lI~~a~--- 149 (276)
T 1u83_A 81 DLEEKISTLKEHDITF------FFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMT--NKEKAAYIADFS--- 149 (276)
T ss_dssp THHHHHHHHHHTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCC--HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCeE------eCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHH---
Confidence 3788899999999998 678888887554 5789999998667886554422 233344443332
Q ss_pred CCCCcccCCC---------CCCHHHHHHHHHh--HhCCCceeeCH
Q 008480 511 TQPLKFLYPL---------DVSIKEKIDTIAR--SYGASGVEYSE 544 (564)
Q Consensus 511 ~~~fk~LYd~---------~~~I~eKIetIA~--IYGA~~V~~S~ 544 (564)
+. |+.+.+. ..++.+.|+.+.+ =-||+-|....
T Consensus 150 ~~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 150 DE-FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp TT-SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred hh-cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 23 8777742 3567888999988 77888887654
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=37.32 E-value=20 Score=34.74 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
.++|.||| |.|.||||++--|+
T Consensus 75 ~~iI~I~G----~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTG----ISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEE----CTTSCHHHHHHHHH
T ss_pred CEEEEEEC----CCCCCHHHHHHHHH
Confidence 56899999 57999999887776
No 403
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=37.02 E-value=1.5e+02 Score=29.24 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=50.9
Q ss_pred CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCcc-------------ccCc-cc------hHHHHHHHHHHhhc
Q 008480 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH-------------AHGG-KG------AVDLGIAVQRACEN 509 (564)
Q Consensus 450 GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~w-------------akGG-eG------a~eLA~~Vvea~e~ 509 (564)
++|++|=++- .-|++|+..+.+.+++.|+.-+.+++++ ..|| .| +.+++++|.+.+.
T Consensus 211 ~~Pv~vKi~~--~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~- 287 (336)
T 1f76_A 211 YVPIAVKIAP--DLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELN- 287 (336)
T ss_dssp CCCEEEECCS--CCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHT-
T ss_pred cCceEEEecC--CCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhC-
Confidence 6899997662 3356777777888899999755566553 1333 23 2355566665552
Q ss_pred CCCCCcccCCCC-CCHHHHHHHHHhHhCCCceeeCHHHH
Q 008480 510 VTQPLKFLYPLD-VSIKEKIDTIARSYGASGVEYSEEVN 547 (564)
Q Consensus 510 ~~~~fk~LYd~~-~~I~eKIetIA~IYGA~~V~~S~~A~ 547 (564)
.++...-.-. .+-++=.+.| ..|||.|.......
T Consensus 288 --~~ipVi~~GGI~~~~da~~~l--~~GAd~V~igr~~l 322 (336)
T 1f76_A 288 --GRLPIIGVGGIDSVIAAREKI--AAGASLVQIYSGFI 322 (336)
T ss_dssp --TSSCEEEESSCCSHHHHHHHH--HHTCSEEEESHHHH
T ss_pred --CCCCEEEECCCCCHHHHHHHH--HCCCCEEEeeHHHH
Confidence 1222222211 2333322333 25888887766544
No 404
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=36.92 E-value=12 Score=35.29 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+|.||| |.|.||||++--|++.|+
T Consensus 23 ~iI~I~G----~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSG----GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 3677777 579999999998888774
No 405
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.90 E-value=94 Score=28.38 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCCeEEeecccc-cccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHH
Q 008480 362 PGGFVVTEAGFG-ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (564)
Q Consensus 362 ~~dyvVTEAGFG-aDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~ 440 (564)
.-||||-..+-+ .+......+. ..|.+|+|++-.. ..+.. +.
T Consensus 67 ~yD~viiD~p~~~~~~~~~~~l~--------~aD~viiv~~~~~----------------------~~~~~-------~~ 109 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDEDLEALAD--------GCDLLVIPSTPDA----------------------LALDA-------LM 109 (209)
T ss_dssp GCSEEEEEEECCCSSSHHHHHHH--------TSSEEEEEECSSH----------------------HHHHH-------HH
T ss_pred cCCEEEEeCCCCcCcHHHHHHHH--------HCCEEEEEecCCc----------------------hhHHH-------HH
Confidence 349999887766 4443333321 3477888874221 11222 23
Q ss_pred HHHHHHhhc-CCcEEEEecccCCCc-HHHHHHHHHHHHHcCCC
Q 008480 441 RHIANTKAY-GANVVVAVNMFATDS-KAELNAVRNAAMAAGAF 481 (564)
Q Consensus 441 kHIeNi~~f-GvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~ 481 (564)
+-++.++++ +.++.|.+|++...+ ..+ +.+.+.+++.|.+
T Consensus 110 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 110 LTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 333334442 788999999998876 322 3345566667765
No 406
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=36.87 E-value=46 Score=32.42 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 439 L~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
+..|++...+.|+|+|+.-= .-++++.+.++++|++. ++. ++.+..|+.|..=-.+|++...+.
T Consensus 58 ~~~~~~~a~~~g~~~VigTT---G~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~~~aa~~ 122 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTT---GFTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFAKQAARF 122 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCC---CCCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCEEEcCC---CCCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHHHHHHhh
Confidence 45677777889999999633 24567889999999976 775 788888887776666666554433
No 407
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=36.81 E-value=21 Score=35.31 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=55.6
Q ss_pred cccccHHHHHHHH--hhHHHHHHHHhhc-CCcEEEE--ec-ccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchH
Q 008480 424 YLNENVALVEAGC--VNLARHIANTKAY-GANVVVA--VN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (564)
Q Consensus 424 l~~eNl~aLe~G~--~NL~kHIeNi~~f-GvPvVVA--IN-~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~ 497 (564)
...-+..||+.|+ .++.+.|+.+|+. .+|+|+- .| -|...++.++ +.|.+.|+..+++.+.=- +-.
T Consensus 62 Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~----~~~~~aG~dGviv~Dl~~---ee~- 133 (271)
T 1ujp_A 62 IQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFF----GLFKQAGATGVILPDLPP---DED- 133 (271)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHH----HHHHHHTCCEEECTTCCG---GGC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHH----HHHHHcCCCEEEecCCCH---HHH-
Confidence 3344667788887 3556778888874 8998883 35 3444554444 446778997455543321 222
Q ss_pred HHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh
Q 008480 498 DLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 533 (564)
Q Consensus 498 eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~ 533 (564)
...++.+.+..-.+-+|..+..+.+ .|+.|++
T Consensus 134 ---~~~~~~~~~~gl~~i~liap~s~~e-ri~~ia~ 165 (271)
T 1ujp_A 134 ---PGLVRLAQEIGLETVFLLAPTSTDA-RIATVVR 165 (271)
T ss_dssp ---HHHHHHHHHHTCEEECEECTTCCHH-HHHHHHT
T ss_pred ---HHHHHHHHHcCCceEEEeCCCCCHH-HHHHHHH
Confidence 2333444321123456666666654 6666665
No 408
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=36.69 E-value=41 Score=32.74 Aligned_cols=90 Identities=13% Similarity=0.019 Sum_probs=55.4
Q ss_pred cceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHH
Q 008480 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (564)
Q Consensus 393 P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~ 472 (564)
-|.+-+|.-+.+||-. . +++-.+++.++.+-+ ...++||++.-- +. |++|+....
T Consensus 80 AdEID~Vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lKvIlEt~-~L--t~eei~~a~ 134 (226)
T 1vcv_A 80 ADEIDVVAPIGLVKSR--R----------WAEVRRDLISVVGAA----------GGRVVKVITEEP-YL--RDEERYTLY 134 (226)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT----------TTSEEEEECCGG-GC--CHHHHHHHH
T ss_pred CCEEEEecchhhhcCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEecc-CC--CHHHHHHHH
Confidence 4788888888888732 1 223333333333332 234666665444 44 478999999
Q ss_pred HHHHHcCCCeEEEcCccc----------cCccchHH--HHHHHHHHh
Q 008480 473 NAAMAAGAFDAVVCSHHA----------HGGKGAVD--LGIAVQRAC 507 (564)
Q Consensus 473 ~~~~~~G~~~~~vs~~wa----------kGGeGa~e--LA~~Vvea~ 507 (564)
+.|.++|+..+-.|+.|. .||.--.+ |=+++++.+
T Consensus 135 ~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~ 181 (226)
T 1vcv_A 135 DIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEK 181 (226)
T ss_dssp HHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 999999997444678898 56665444 334444444
No 409
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=36.38 E-value=26 Score=33.14 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk 103 (564)
+.++=||++| |-|.||||++..+++.++ ..+.
T Consensus 65 ~~~~~vll~G----~~GtGKT~la~~la~~l~-~~~~ 96 (309)
T 3syl_A 65 TPTLHMSFTG----NPGTGKTTVALKMAGLLH-RLGY 96 (309)
T ss_dssp CCCCEEEEEE----CTTSSHHHHHHHHHHHHH-HTTS
T ss_pred CCCceEEEEC----CCCCCHHHHHHHHHHHHH-hcCC
Confidence 3455678887 789999999999999995 5443
No 410
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=36.35 E-value=25 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..++.|+++| |.|.||||++.-+.+.+.
T Consensus 42 ~~~~~vll~G----~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYG----LTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECB----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4466788887 679999999999988884
No 411
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=36.20 E-value=60 Score=31.79 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=50.8
Q ss_pred ceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecc-cCC--CcHHHHHH
Q 008480 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FAT--DSKAELNA 470 (564)
Q Consensus 394 ~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~-F~t--DT~aEi~~ 470 (564)
|.+-+|--+.+||-. . +++-.+++.++.+-| . |.|+=|.|.. +-. .|++|+..
T Consensus 95 dEIDmVinig~lk~g--~----------~~~v~~ei~~v~~a~-----------~-~~~lKvIiEt~~L~~~~t~eei~~ 150 (231)
T 3ndo_A 95 TEIDMVIDVGAALAG--D----------LDAVSADITAVRKAV-----------R-AATLKVIVESAALLEFSGEPLLAD 150 (231)
T ss_dssp SEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT-----------T-TSEEEEECCHHHHHHHTCHHHHHH
T ss_pred CEEEEEeehHhhhcc--c----------HHHHHHHHHHHHHHc-----------c-CCceEEEEECcccCCCCCHHHHHH
Confidence 667777778877632 1 222233333333322 1 5676666664 221 27899999
Q ss_pred HHHHHHHcCCCeEEEcCccc-cCccchHH
Q 008480 471 VRNAAMAAGAFDAVVCSHHA-HGGKGAVD 498 (564)
Q Consensus 471 v~~~~~~~G~~~~~vs~~wa-kGGeGa~e 498 (564)
..+.|.++|+..+=.|+.|. .||.--.+
T Consensus 151 a~~ia~~aGADfVKTSTGf~~~~gAt~ed 179 (231)
T 3ndo_A 151 VCRVARDAGADFVKTSTGFHPSGGASVQA 179 (231)
T ss_dssp HHHHHHHTTCSEEECCCSCCTTCSCCHHH
T ss_pred HHHHHHHHCcCEEEcCCCCCCCCCCCHHH
Confidence 99999999997444678897 78776443
No 412
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=36.11 E-value=41 Score=33.43 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=69.8
Q ss_pred CCCCCccCCCCCcc------ccccccHHHHHHHHh--hHHHHHHHHhh--cCCcEEEE--ecc-cCCCcHHHHHHHHHHH
Q 008480 409 GGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTKA--YGANVVVA--VNM-FATDSKAELNAVRNAA 475 (564)
Q Consensus 409 GG~~~~~~g~PLp~------~l~~eNl~aLe~G~~--NL~kHIeNi~~--fGvPvVVA--IN~-F~tDT~aEi~~v~~~~ 475 (564)
+|+.-..+|.|..+ ....-+..||+.|+. ++...++.+|+ ..+|+|+- .|- |.... +...+.|
T Consensus 46 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~----~~f~~~~ 121 (271)
T 3nav_A 46 AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGI----DDFYQRC 121 (271)
T ss_dssp TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhH----HHHHHHH
Confidence 67887778876633 233457778999963 55666777776 37898873 363 44443 3344567
Q ss_pred HHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh
Q 008480 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 533 (564)
Q Consensus 476 ~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~ 533 (564)
+++|+..+++.+.=- +-++.+++.+.+..-.+-||-....+. |.++.|++
T Consensus 122 ~~aGvdGvIipDlp~-------ee~~~~~~~~~~~gl~~I~lvap~t~~-eri~~i~~ 171 (271)
T 3nav_A 122 QKAGVDSVLIADVPT-------NESQPFVAAAEKFGIQPIFIAPPTASD-ETLRAVAQ 171 (271)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEEEEECTTCCH-HHHHHHHH
T ss_pred HHCCCCEEEECCCCH-------HHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHH
Confidence 889998666654422 225667777764222345566666554 56777765
No 413
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.92 E-value=25 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
++|+|| |.|.|||+.++-+...+
T Consensus 7 i~l~tG----~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITG----TPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHH
Confidence 667777 57999999998877666
No 414
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=35.90 E-value=1e+02 Score=32.24 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred hhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEe-----ecccccccccccccc
Q 008480 309 GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT-----EAGFGADIGAEKFMN 383 (564)
Q Consensus 309 ~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVT-----EAGFGaDlGaEKF~d 383 (564)
.||+.+++ .+++.=.++|| +.||.+-.-.-+......+-..+-| ++=|| |-+|..+
T Consensus 26 ~Ga~~a~~----------~i~d~~~i~HG------p~GC~~~~r~~~~~~~~~~~~~~sT~l~E~d~VfG---g~~~L~~ 86 (458)
T 1mio_B 26 VGAMYAAL----------GIHNCLPHSHG------SQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFG---GGSNIKT 86 (458)
T ss_dssp HHHHHHHT----------TBTTEEEEEES------CHHHHHHHHHHHHHHHSSCCCCEECCCCTTHHHHC---SHHHHHH
T ss_pred HHHHHHHh----------ccCCeEEEEeC------CchHHHHHHHHHHhhccCCCCcceeccccCceeeC---cHHHHHH
Confidence 36666654 46777789999 6789876533223333311112222 12255 3355543
Q ss_pred ccccc-CCCCcceEEEEeehhH-------------HHhcC----CCCCccCCCCCccccccccHHHHHHHHhhHHHHH-H
Q 008480 384 IKCRY-SGLTPQCAVIVATIRA-------------LKMHG----GGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI-A 444 (564)
Q Consensus 384 Ikcr~-~gl~P~avVlVaTvRA-------------LK~HG----G~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHI-e 444 (564)
---.. .-.+|++++|++|+-+ ++--. |.+....- - +.+.. .-..|..+..+-| +
T Consensus 87 aI~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pvi~v~--t-pgf~g----s~~~G~~~a~~al~~ 159 (458)
T 1mio_B 87 AVKNIFSLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTN--T-PSYVG----SHVTGFANMVQGIVN 159 (458)
T ss_dssp HHHHHHHHTCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEEC--C-CTTSS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcHHHHHhcCHHHHHHHHHHhcCCCCCCeEEEEE--C-CCCcc----cHHHHHHHHHHHHHH
Confidence 21111 1348999999999743 22221 22211110 0 11221 1234444333322 1
Q ss_pred HHhh---cCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEc---------------CccccCccchHHHH
Q 008480 445 NTKA---YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC---------------SHHAHGGKGAVDLG 500 (564)
Q Consensus 445 Ni~~---fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs---------------~~wakGGeGa~eLA 500 (564)
.+.+ -.-+-|-.|--| ++..++..|+++.++.|++ +... ..|..||..-.||.
T Consensus 160 ~l~~~~~~~~~~VNilg~~--~~~~d~~eik~lL~~~Gi~-v~~l~d~s~~ld~~~~~~~~~~~~gg~~~~ei~ 230 (458)
T 1mio_B 160 YLSENTGAKNGKINVIPGF--VGPADMREIKRLFEAMDIP-YIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLK 230 (458)
T ss_dssp HHCCCCSCCCSCEEEECCS--CCHHHHHHHHHHHHHHTCC-EEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHH
T ss_pred HHccccCCCCCcEEEECCC--CCHHHHHHHHHHHHHcCCc-EEEeccccccccCcccCccceeCCCCCcHHHHH
Confidence 1111 011223344445 4588999999999999997 5431 36777887766644
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=35.49 E-value=25 Score=34.53 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNL 140 (564)
..|.+|-++| |-|.||||++--|..-+. . .|+ +|...+++|+++.+
T Consensus 78 ~~g~iigI~G----~~GsGKSTl~~~L~~~l~-~----------~~~-------------~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAG----SVAVGKSTTARVLQALLS-R----------WPE-------------HRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEE----CTTSSHHHHHHHHHHHHT-T----------STT-------------CCCEEEEEGGGGBC
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHHh-h----------CCC-------------CCeEEEEecCCccC
Confidence 5688888888 679999999877755442 1 132 35567888888764
No 416
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=35.43 E-value=35 Score=33.60 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHcCCCCcccccccCceeeec--chhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVL--LSVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 27 ~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~--~~~l~~~~-~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
...++.++..++ -++++..+.....++ +.-|+++- .-+.|.+|+|+| +.|.||||.+.-++...
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G----~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 26 DDGSIDEALVTV---YEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCCCCHHHHHHH---HHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHH---HHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 466788777653 134443211122333 33455532 236799999998 57999999988877655
No 417
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=35.39 E-value=29 Score=37.66 Aligned_cols=68 Identities=22% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCcEEEEecccCCCc------HHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 440 ARHIANTKAYGANVVVAVNMFATDS------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 440 ~kHIeNi~~fGvPvVVAIN~F~tDT------~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
..|++.++..++|+||++|+-.-.. ..++......+++.+.. +-+-..=++=|+|-.+|-+.+...++
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~-~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGD-VQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSS-EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCC-ceEEEEECCCCCCchhHHHHHHHhhh
Confidence 3577888889999999999865321 11221111112222221 33445557788999999999988775
No 418
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=35.28 E-value=62 Score=30.45 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=39.9
Q ss_pred cCCcEEEEecccCC--Cc-HHHH-----HHHHHHHHHcCCCeEEEcCccccC---ccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFAT--DS-KAEL-----NAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~t--DT-~aEi-----~~v~~~~~~~G~~~~~vs~~wakG---GeGa~eLA~~Vvea~e~ 509 (564)
.+.|+||++|+-.- ++ ++.+ +.+++++++.|.+ +.+-+.-+.+ ++|-.+|-++|.+.+.+
T Consensus 138 ~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 138 LKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 37899999998543 22 2222 3356777777876 4433333333 78999999999998874
No 419
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=35.25 E-value=83 Score=27.82 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=36.9
Q ss_pred cCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+|++.|+..-..+.+ ++..+.++...++. +..+ =|+=|+|-.+|-+.+++.+.
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~--SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIET--SAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEe--ccccCCCHHHHHHHHHHHHH
Confidence 5899999999875422211 23334566667764 4333 36668898888888777663
No 420
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=34.75 E-value=2.7e+02 Score=29.99 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=82.7
Q ss_pred Cceeeccccc---hhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEe---e--c
Q 008480 299 DPITADDLGV---GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT---E--A 370 (564)
Q Consensus 299 ~pVta~DL~~---~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVT---E--A 370 (564)
+++|..=++. .||+.++ +.+++.=.+||| +.||.+-.-.-+......+-..+-| | +
T Consensus 60 ~~~~vnP~k~C~~~GA~~a~----------~gI~d~~~lvHG------p~GC~~~~~~~~~r~f~e~~~~~sT~l~E~d~ 123 (523)
T 3u7q_B 60 EALTVNPAKACQPLGAVLCA----------LGFEKTMPYVHG------SQGCVAYFRSYFNRHFREPVSCVSDSMTEDAA 123 (523)
T ss_dssp SSCEESCSCCCHHHHHHHHH----------HTBTTEEEEEES------CHHHHHHHHHHHHHHHSSCCCCEECCCCTTHH
T ss_pred cccccCCcccChHHHHHHHH----------hccCCcEEEEec------CchHHHHHHHHHhcccCCCcceeeeecchhhe
Confidence 4555554443 2565554 457888899999 6799987654444444322111222 2 3
Q ss_pred cccccccccccccccccc-CCCCcceEEEEeehh-------------HHHhcCCCCCccCCCCCc----cccccccHHHH
Q 008480 371 GFGADIGAEKFMNIKCRY-SGLTPQCAVIVATIR-------------ALKMHGGGPQVVAGKPLD----HAYLNENVALV 432 (564)
Q Consensus 371 GFGaDlGaEKF~dIkcr~-~gl~P~avVlVaTvR-------------ALK~HGG~~~~~~g~PLp----~~l~~eNl~aL 432 (564)
=|| |-+|..+--.+. .-.+|++++|++|+- .++-.++.|. +.|++ ..+.......-
T Consensus 124 VfG---G~~kL~~aI~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~ip~---~~~Vv~v~tpgf~Gs~~~G~ 197 (523)
T 3u7q_B 124 VFG---GQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPD---EFPVPFAHTPSFVGSHVTGW 197 (523)
T ss_dssp HHC---SHHHHHHHHHHHHHHHCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCT---TSCCCBCCCCTTSSCHHHHH
T ss_pred ecC---cHHHHHHHHHHHHHhhCCCEEEEeCCcHHHHhcCCHHHHHHHHHHhcCCCC---CceEEEeeCCCCCCChhHHH
Confidence 355 334433221111 123799999999963 3333333321 11121 12222223333
Q ss_pred HHHHhhHHHHHHHHh-----hcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEE
Q 008480 433 EAGCVNLARHIANTK-----AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAV 484 (564)
Q Consensus 433 e~G~~NL~kHIeNi~-----~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~ 484 (564)
..-+.-|.+|+-.-+ .-.-+-|-.|--|. .+..++..|+++.++.|++ +.
T Consensus 198 ~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~-~~~gD~~elkrlL~~~Gi~-v~ 252 (523)
T 3u7q_B 198 DNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFE-TYLGNFRVIKRMLSEMGVG-YS 252 (523)
T ss_dssp HHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSC-CCHHHHHHHHHHHHHTTCC-EE
T ss_pred HHHHHHHHHHhcccccccccCCCCCeEEEECCCC-CChhHHHHHHHHHHHcCCe-EE
Confidence 333444445543211 01123344455553 2488889999999999997 44
No 421
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=34.74 E-value=72 Score=29.71 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 437 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.|+.+.++.+++ -++|+|++.|+-.-..+. ..+..+++|++.|+. +.. .=|+=|+|-.++=+.+++.+.
T Consensus 102 ~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e--~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 102 QQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIE--TSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE--EBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEE--EeCCCCcCHHHHHHHHHHHHH
Confidence 344444544443 479999999996532221 234457888999986 443 337788998888777777664
No 422
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=34.73 E-value=30 Score=35.43 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
+.|.|-|||.+ |||||+-=|.+.| ...|.++. ..--|.++
T Consensus 38 ~~~vI~VtGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~sp~l~ 77 (428)
T 1jbw_A 38 QGRYIHVTGTN------GKGSAANAIAHVL-EASGLTVG-LYTSPFIM 77 (428)
T ss_dssp SSCEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE-EECSSCSS
T ss_pred cCcEEEEECCC------ChHHHHHHHHHHH-HHCCCCEE-EEeCCccC
Confidence 46799999986 9999999999999 47788754 33445443
No 423
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=34.44 E-value=1.1e+02 Score=27.86 Aligned_cols=86 Identities=7% Similarity=0.028 Sum_probs=51.3
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEe-cccCC--CcHH-------HHHHHHHHHHHcCCCeEEEcCcccc---Cc-cchH
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKA-------ELNAVRNAAMAAGAFDAVVCSHHAH---GG-KGAV 497 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVAI-N~F~t--DT~a-------Ei~~v~~~~~~~G~~~~~vs~~wak---GG-eGa~ 497 (564)
-++....+++.|+..+.+|.+.||.- ..++. ++++ -++.+.+.|++.|+. +++-++-.. +. -...
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~~ 158 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEALSPGVKPHYLFSSQ 158 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSCCSH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCccCCCcCccCCH
Confidence 45667789999999999999998763 33332 2332 233445556678996 777665211 11 1223
Q ss_pred HHHHHHHHHhhcCCCCCcccCCC
Q 008480 498 DLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 498 eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
+-+.++++.+. +.++.+.||.
T Consensus 159 ~~~~~l~~~~~--~~~~g~~~D~ 179 (260)
T 1k77_A 159 YQALAIVEEVA--RDNVFIQLDT 179 (260)
T ss_dssp HHHHHHHHHHC--CTTEEEEEEH
T ss_pred HHHHHHHHHhC--CCCEEEEeeH
Confidence 33555666653 2357776654
No 424
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=34.39 E-value=30 Score=34.79 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=64.4
Q ss_pred CeEEeecccccccccccccccccccCCCCcceE---EEEeehhHHHhcCCCCCccCCCCCcccccc------ccHHHH-H
Q 008480 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (564)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~av---VlVaTvRALK~HGG~~~~~~g~PLp~~l~~------eNl~aL-e 433 (564)
||+||-.-|..|. .++|++ +||..|+.--.+ .-+.+.+.+++-... .|..+|+++.+ .|.+++ +
T Consensus 175 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d~~~~~~ 248 (310)
T 3apt_A 175 DFAITQLFFNNAH-YFGFLE-RARRAGIGIPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDDPKAVLE 248 (310)
T ss_dssp SEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTCHHHHHH
T ss_pred CEEEecccCCHHH-HHHHHH-HHHHcCCCCeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCCHHHHHH
Confidence 9999999998877 788888 899999851111 115577777665332 34445654322 233433 4
Q ss_pred HHHhhHHHHHHHHhhcCCcEE--EEecccCCCcHHHHHHHHHHHHHcCC
Q 008480 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (564)
Q Consensus 434 ~G~~NL~kHIeNi~~fGvPvV--VAIN~F~tDT~aEi~~v~~~~~~~G~ 480 (564)
.|..--...++.+...|+|=| ..+|+. +.+.+.++.+|.
T Consensus 249 ~gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~l~~ 289 (310)
T 3apt_A 249 IGVEHAVRQVAELLEAGVEGVHFYTLNKS--------PATRMVLERLGL 289 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSSC--------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeCCCCH--------HHHHHHHHHcCC
Confidence 677766677888887888832 223332 345566676766
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=34.06 E-value=97 Score=25.77 Aligned_cols=57 Identities=14% Similarity=-0.001 Sum_probs=34.0
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHH-----HHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNA-----AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~-----~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
.++|+++++|+..-..+.+.+.+.+. +++.++. +. ..=++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ-IF--KTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE-EE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE-EE--ECcCCCCcCHHHHHHHHHHHHh
Confidence 68999999999754333222222222 2223332 33 3335677888888888887764
No 426
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=34.03 E-value=28 Score=36.10 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCC
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlG 115 (564)
+-|.|-|||.+ |||||+-=|.+.| ...|.++. ...-|.++
T Consensus 51 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~Sphl~ 90 (442)
T 1o5z_A 51 EYKTIHIGGTN------GKGSVANMVSNIL-VSQGYRVG-SYYSPHLS 90 (442)
T ss_dssp SSEEEEEECSS------SHHHHHHHHHHHH-HHHTCCEE-EECCSCSS
T ss_pred cCCEEEEECCc------CHHHHHHHHHHHH-HHCCCCEE-EECCCCcC
Confidence 35789999886 9999999999999 47898854 34555544
No 427
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.03 E-value=28 Score=33.78 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=30.6
Q ss_pred cccCceeeecc-hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 47 LYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 47 ~YG~~kAKi~~-~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.+|+.+..-.+ +.+.+......++.|+++| |.|.||||++.-+++.+.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G----~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLG----LTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 45654433222 2333322234466899998 689999999999988884
No 428
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=33.94 E-value=1.5e+02 Score=26.01 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=40.7
Q ss_pred HhhcCCcEEEEecccCCCcHHH----HHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 446 TKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 446 i~~fGvPvVVAIN~F~tDT~aE----i~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++.+++|++++.|+...-+..| ++.+++++.+.+.. ...-..=+.=|+|-.+|-+.+.+.+.+
T Consensus 133 ~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 133 AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD-VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC-EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC-CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3468999999999977655543 45666666655432 111112245678888888888877653
No 429
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=33.93 E-value=1.5e+02 Score=29.11 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHhhc--CCcEEEEecccCCCcHHHHHHHHHHHHHc-CCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 444 ANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 444 eNi~~f--GvPvVVAIN~F~tDT~aEi~~v~~~~~~~-G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
+.++++ ++|+++++|+-.-.++.+ + +.+.+++. +...+. ..=|+=|+|-.+|-+.+.+.+.
T Consensus 109 ~~l~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~--~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 109 RALKPLVGKVPILLVGNKLDAAKYPE-E-AMKAYHELLPEAEPR--MLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHHGGGTTTSCEEEEEECGGGCSSHH-H-HHHHHHHTSTTSEEE--ECCTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhhcCCCCEEEEEECcccCCchH-H-HHHHHHHhcCcCcEE--EEeCCCCCCHHHHHHHHHHhcc
Confidence 456666 899999999987654444 0 23333332 332222 3346778888888888776653
No 430
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.91 E-value=19 Score=32.27 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+.|.++.+.+ |-|.||||+..-|+-
T Consensus 23 ~~G~~~~l~G----~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFG----EFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEE----STTSSHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHH
Confidence 4688998888 789999998776654
No 431
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=33.87 E-value=39 Score=35.63 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=44.1
Q ss_pred hHHHHHHHHhhcC--CcEEEEecccCCCcHH--HHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 438 NLARHIANTKAYG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 438 NL~kHIeNi~~fG--vPvVVAIN~F~tDT~a--Ei~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
++..-++.++.++ .|+||+.|+..-..+. ..+.+++++...|.. +.. .=++-|+|-.+|-+.+.+.+.+
T Consensus 136 ~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 136 NKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHR--ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp GHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEE--CCC-----CTTHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEE--EecCcccCHHHHHHHHHHHHhc
Confidence 3445566666665 9999999997643222 245567777778876 333 3356789999999999998865
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=33.75 E-value=16 Score=33.03 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+..|.+|| |.|.||||++--|+.-+
T Consensus 5 ~~~i~i~G----~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDG----PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34666666 67999999887776555
No 433
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=33.69 E-value=81 Score=27.67 Aligned_cols=65 Identities=12% Similarity=-0.014 Sum_probs=35.8
Q ss_pred hhHHHHHHHHh--hcCCcEEEEecccCCCc-------HHHH--HHHHHHHH----HcCCCeEEEcCccccCccchHHHHH
Q 008480 437 VNLARHIANTK--AYGANVVVAVNMFATDS-------KAEL--NAVRNAAM----AAGAFDAVVCSHHAHGGKGAVDLGI 501 (564)
Q Consensus 437 ~NL~kHIeNi~--~fGvPvVVAIN~F~tDT-------~aEi--~~v~~~~~----~~G~~~~~vs~~wakGGeGa~eLA~ 501 (564)
.++.+.++.++ .-++|+|++.|+..--. ..++ +...++++ +.++. +..+... - +|-.++-+
T Consensus 114 ~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~e~Sa~--~-~~v~~~f~ 189 (196)
T 3llu_A 114 TRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS-FYLTSIY--D-HSIFEAFS 189 (196)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE-EEEECTT--S-THHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc-eEEEEec--h-hhHHHHHH
Confidence 34445555543 24899999999976322 2222 12344555 44554 4444443 3 66666666
Q ss_pred HHHH
Q 008480 502 AVQR 505 (564)
Q Consensus 502 ~Vve 505 (564)
.+++
T Consensus 190 ~l~~ 193 (196)
T 3llu_A 190 KVVQ 193 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=33.54 E-value=17 Score=37.52 Aligned_cols=27 Identities=30% Similarity=0.153 Sum_probs=20.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+..++|+++| |-|.||||.+--|++.+
T Consensus 256 ~~~~lIil~G----~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVG----FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEES----CTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 3578999998 47999999876665433
No 435
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=33.51 E-value=1.8e+02 Score=30.37 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhh
Q 008480 429 VALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (564)
Q Consensus 429 l~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e 508 (564)
++.+..|..-|......+ ...|.|+++|+-.-.+.+.++.+++++++.|.. ++.++ |.=|+|-.+|.+.+.+.+.
T Consensus 250 ~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~-vi~iS--A~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 250 LKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEEEAVKALADALAREGLA-VLPVS--ALTGAGLPALKEALHALVR 324 (416)
T ss_dssp HHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe-EEEEE--CCCccCHHHHHHHHHHHHH
Confidence 345666655554432222 357999999998877667777788888777876 54444 4557899999999999886
Q ss_pred c
Q 008480 509 N 509 (564)
Q Consensus 509 ~ 509 (564)
+
T Consensus 325 ~ 325 (416)
T 1udx_A 325 S 325 (416)
T ss_dssp T
T ss_pred h
Confidence 4
No 436
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=33.04 E-value=28 Score=36.74 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCcccccccCceeeecc-hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH----HHhhhcCCceEEEecCC
Q 008480 39 NLKPNHYDLYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ----ALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 39 gl~~~~l~~YG~~kAKi~~-~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~q----aL~~~lgk~~~~~lReP 112 (564)
++++. -..||+..-+-.+ +.|.. ...++.++|.|+|| .|-||||++.-+.. -...+......+++++.
T Consensus 123 ~~p~~-~~~~GR~~~~~~l~~~L~~-~~~~~~~vv~I~G~----gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~ 195 (549)
T 2a5y_B 123 NVPKQ-MTCYIREYHVDRVIKKLDE-MCDLDSFFLFLHGR----AGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 195 (549)
T ss_dssp TCBCC-CCSCCCHHHHHHHHHHHHH-HTTSSSEEEEEECS----TTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC
T ss_pred CCCCC-CccCCchHHHHHHHHHHhc-ccCCCceEEEEEcC----CCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC
Confidence 44433 3337986543222 12221 11234689999997 79999998876663 33334455566666653
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=32.81 E-value=21 Score=34.00 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQA 96 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qa 96 (564)
++|+++|. .|.||||.+--|++.
T Consensus 3 ~~I~l~G~----~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGC----PGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHH
T ss_pred eEEEEECC----CCCCHHHHHHHHHHh
Confidence 57888884 799999988888764
No 438
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=32.75 E-value=16 Score=42.26 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
|++|+|+||+. .|+|||+++-.-.-|=+
T Consensus 22 p~~~l~v~tG~----SGSGKSsLafdtl~aeg 49 (916)
T 3pih_A 22 PKNRLVVITGV----SGSGKSSLAMDTIYAEG 49 (916)
T ss_dssp ETTSEEEEEES----TTSSSHHHHTTTHHHHH
T ss_pred CCCcEEEEECC----CCCcHHHHHHHHHHHHH
Confidence 78999999996 69999999988654443
No 439
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=32.72 E-value=47 Score=30.01 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=42.6
Q ss_pred HHHHHHhhc--CCcEEEEecccCCCcH--------------HHHHHHHHHHHHcCCCeEEEcCccccCccc-hHHHHHHH
Q 008480 441 RHIANTKAY--GANVVVAVNMFATDSK--------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG-AVDLGIAV 503 (564)
Q Consensus 441 kHIeNi~~f--GvPvVVAIN~F~tDT~--------------aEi~~v~~~~~~~G~~~~~vs~~wakGGeG-a~eLA~~V 503 (564)
..++.++.+ ++|+|++.|+..-..+ -..+..+++|++.|+..+..+. ++=|+| -.+|-+.+
T Consensus 120 ~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--A~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 120 KWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS--AFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC--TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec--cCCCcccHHHHHHHH
Confidence 334444443 8999999998754221 1234457788888883244333 566887 77777888
Q ss_pred HHHhhc
Q 008480 504 QRACEN 509 (564)
Q Consensus 504 vea~e~ 509 (564)
++.+.+
T Consensus 198 ~~~~~~ 203 (214)
T 3q3j_B 198 SMLCLN 203 (214)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 777653
No 440
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=32.50 E-value=1.6e+02 Score=27.86 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHHhh-cCCcEEEEe---cccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 442 HIANTKA-YGANVVVAV---NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 442 HIeNi~~-fGvPvVVAI---N~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
-|+.+++ .+ |+.|-+ .-+- |++|+..+.+.|.++|+..+..++.|..||. ..+..+.+.+.+
T Consensus 107 ~i~~v~~a~~-pv~vKvi~e~~~l--~~~~~~~~a~~a~eaGad~I~tstg~~~gga-~~~~i~~v~~~v 172 (225)
T 1mzh_A 107 ELKEIFRETP-SAVHKVIVETPYL--NEEEIKKAVEICIEAGADFIKTSTGFAPRGT-TLEEVRLIKSSA 172 (225)
T ss_dssp HHHHHHHTCT-TSEEEEECCGGGC--CHHHHHHHHHHHHHHTCSEEECCCSCSSSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CceEEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-CHHHHHHHHHHh
Confidence 3555555 34 777765 3332 4678989999999999973333555655553 445556666655
No 441
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=32.43 E-value=42 Score=29.54 Aligned_cols=123 Identities=9% Similarity=0.049 Sum_probs=63.0
Q ss_pred CCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHH
Q 008480 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (564)
Q Consensus 361 g~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~ 440 (564)
...||||-+.+-+.+-.....+ +. -|.+|+|++-. ... .++..+.
T Consensus 74 ~~yD~viiD~~~~~~~~~~~~l----~~----ad~viiv~~~~-------------------------~~~--~~~~~~~ 118 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVITSAAV----MV----SDLVIIPVTPS-------------------------PLD--FSAAGSV 118 (206)
T ss_dssp TTSSEEEEECCSSSSHHHHHHH----HH----CSEEEEEECSC-------------------------TTT--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH----HH----CCEEEEEecCC-------------------------HHH--HHHHHHH
Confidence 3459999998766533222222 22 36788877321 011 2233444
Q ss_pred HHHHHHhh--cCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 441 RHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 441 kHIeNi~~--fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
+.++.++. -++++-|.+|++...+.. .+.+++++++.|.+ + +.... .--..+.++...+ ++++
T Consensus 119 ~~l~~~~~~~~~~~~~vv~N~~~~~~~~-~~~~~~~l~~~~~~-v-l~~~I--------p~~~~~~~a~~~g----~~v~ 183 (206)
T 4dzz_A 119 VTVLEAQAYSRKVEARFLITRKIEMATM-LNVLKESIKDTGVK-A-FRTAI--------TQRQVYVKSILDG----DSVF 183 (206)
T ss_dssp HHHHTTSCGGGCCEEEEEECSBCTTEEE-EHHHHHHHHHHTCC-B-CSSCC--------BCCHHHHHHHHTT----CCGG
T ss_pred HHHHHHHHhCCCCcEEEEEeccCCCchH-HHHHHHHHHHcCCc-e-eeccc--------cccHHHHHHHHcC----CCcc
Confidence 44444442 357889999999876542 12345666666765 2 21111 1123344444432 2222
Q ss_pred -CCCCCHHHHHHHHHh
Q 008480 519 -PLDVSIKEKIDTIAR 533 (564)
Q Consensus 519 -d~~~~I~eKIetIA~ 533 (564)
..+.+..+-++.+++
T Consensus 184 ~~~~s~~~~~~~~la~ 199 (206)
T 4dzz_A 184 ESSDGAAKGEIEILTK 199 (206)
T ss_dssp GSSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHH
Confidence 234457777777776
No 442
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=32.42 E-value=16 Score=32.85 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.5
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|++|| |-|.||||++--|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMG----LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66666 46999999988887766
No 443
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.11 E-value=24 Score=36.68 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecc----
Q 008480 296 KAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAG---- 371 (564)
Q Consensus 296 ~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAG---- 371 (564)
..|+|-+...+. ||+.++ +.+++.=.+||| +.||..-..+.++-...++..|.-|.-.
T Consensus 14 ~~~~~~~~C~~~--Ga~~~~----------~~I~d~~~i~hg------p~GC~~~~~~~~~~~~f~e~~~~~t~l~E~di 75 (460)
T 2xdq_A 14 ETGNYHTFCPIS--CVAWLY----------QKIEDSFFLVIG------TKTCGYFLQNAMGVMIFAEPRYAMAELEEGDI 75 (460)
T ss_dssp CCCCCCCCCGGG--HHHHHH----------HHSTTEEEEEEE------CHHHHHHHHHHTGGGGGSCCSEEEEECCHHHH
T ss_pred cCCCCCCCCcHH--HHHHHH----------cCCCCcEEEEEC------CCcccchhhhhhhhhcccCCccccccCchhhh
Confidence 456776666654 343333 234555689999 5789987764432222333356655532
Q ss_pred ---cccccccccccccccccC--CCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHH
Q 008480 372 ---FGADIGAEKFMNIKCRYS--GLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT 446 (564)
Q Consensus 372 ---FGaDlGaEKF~dIkcr~~--gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi 446 (564)
||. -||..+. |+.. -.+|++++|++|+- .++..+|++++-+-+.
T Consensus 76 v~~~Gg---~ekL~~~-i~~~~~~~~P~~I~v~~TC~------------------~~iIGdDi~~v~~~~~--------- 124 (460)
T 2xdq_A 76 SAQLND---YEELKRL-CLEIKRDRNPSVIVWIGTCT------------------TEIIKMDLEGLAPKLE--------- 124 (460)
T ss_dssp TTSSCH---HHHHHHH-HHHHHHHHCCSEEEEEECHH------------------HHHTTCCHHHHHHHHH---------
T ss_pred hhhcCC---hHHHHHH-HHHHHHhcCCCEEEEECCCH------------------HHHHhhCHHHHHHHHh---------
Confidence 452 3554332 2211 35799999999875 3555677776654432
Q ss_pred hhcCCcEEEE
Q 008480 447 KAYGANVVVA 456 (564)
Q Consensus 447 ~~fGvPvVVA 456 (564)
+++|+|||.+
T Consensus 125 ~~~~ipVi~v 134 (460)
T 2xdq_A 125 AEIGIPIVVA 134 (460)
T ss_dssp HHHSSCEEEE
T ss_pred hccCCcEEEE
Confidence 1358887654
No 444
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=32.01 E-value=21 Score=29.64 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHccCCCCCHHHHHHHcCCCCcccc
Q 008480 21 DIANSVEPLHISEIAQELNLKPNHYD 46 (564)
Q Consensus 21 eIa~~~~~~pI~~ia~~lgl~~~~l~ 46 (564)
+--.+.+.-+++++|.++|+..++..
T Consensus 14 ~yIk~~Kvv~LedLA~~F~l~t~~~i 39 (72)
T 1wi9_A 14 NYIKKSKVVLLEDLAFQMGLRTQDAI 39 (72)
T ss_dssp HHHHHCSEECHHHHHHHHCSCHHHHH
T ss_pred HHHHHcCeeeHHHHHHHhCCChHHHH
Confidence 33446778899999999999987653
No 445
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=31.95 E-value=1.6e+02 Score=27.43 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=51.1
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecccCC--CcHHHH-------HHHHHHHHHcCCCeEEEcC-----ccccCccchH
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVAVNMFAT--DSKAEL-------NAVRNAAMAAGAFDAVVCS-----HHAHGGKGAV 497 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVAIN~F~t--DT~aEi-------~~v~~~~~~~G~~~~~vs~-----~wakGGeGa~ 497 (564)
.++....+++.|+..+.+|.+.||..--.+. ++++.+ +.+.+.|++.|+. +++-+ ||..-. ...
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~-~~~ 165 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT-VLVEPLNTRNMPGYFI-VHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSC-CCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccCccchh-cCH
Confidence 4667778999999999999999886221332 333333 3344556678996 66654 221111 234
Q ss_pred HHHHHHHHHhhcCCCCCcccCCC
Q 008480 498 DLGIAVQRACENVTQPLKFLYPL 520 (564)
Q Consensus 498 eLA~~Vvea~e~~~~~fk~LYd~ 520 (564)
+-+..+++.+. +.++.+.||.
T Consensus 166 ~~~~~l~~~v~--~~~vg~~~D~ 186 (269)
T 3ngf_A 166 LEAVGLVKRVN--RPNVAVQLDL 186 (269)
T ss_dssp HHHHHHHHHHC--CTTEEEEEEH
T ss_pred HHHHHHHHHhC--CCCCCeEEEh
Confidence 44556677664 2457777763
No 446
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=31.79 E-value=13 Score=33.44 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=14.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~q 95 (564)
.|.+|| |-|.||||++--|++
T Consensus 4 ~i~l~G----~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTG----GIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEC----STTSCHHHHHHHHHT
T ss_pred EEEEEC----CCCCCHHHHHHHHHH
Confidence 455665 579999998766543
No 447
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=31.54 E-value=47 Score=29.15 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=42.5
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhc--CCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 008480 426 NENVALVEAGCVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (564)
Q Consensus 426 ~eNl~aLe~G~~NL~kHIeNi~~f--GvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs 486 (564)
+.|++.+.+ .|.+.|+..-.| |.|||+=+-.+. ++.+++.+.+.|++.|..-+.++
T Consensus 24 ~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 24 EAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp SCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 456777765 566778888883 899999888876 34679999999999999744444
No 448
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=31.45 E-value=88 Score=26.94 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.5
Q ss_pred cCCcEEEEecccCCCcHHHHHHHHHHH-----HHcCCCeEEEcCccccCccchHHHHHHHHHHhhc
Q 008480 449 YGANVVVAVNMFATDSKAELNAVRNAA-----MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (564)
Q Consensus 449 fGvPvVVAIN~F~tDT~aEi~~v~~~~-----~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~ 509 (564)
.++|+|+++|+-.-..+.+.+.+.+.. ++.++. +. +.=++=|+|-.+|-+.+.+.+.+
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWT-IV--KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EE--ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceE-EE--EccCCCccCHHHHHHHHHHHHHh
Confidence 489999999997654432222222221 122332 33 33356778888888888877753
No 449
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=31.36 E-value=29 Score=35.87 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
-+.|++|++.| |-|.||||++--|+.-+
T Consensus 166 i~~~~~i~l~G----~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKG----PIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 46799999988 78999999888777544
No 450
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=31.34 E-value=43 Score=34.64 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.6
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 58 ~~l~~~~-~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
..|+++- .-+.|.+|+|+| |-|.||||.+.-++..+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G----~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAA----RPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3455432 236799999998 579999999998888773
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=31.06 E-value=25 Score=32.53 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=19.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
-.+|.+||. -|.||||++--|++.|
T Consensus 12 ~~iIgltG~----~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGK----IGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 457888885 7999999987776654
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=31.00 E-value=18 Score=34.95 Aligned_cols=24 Identities=50% Similarity=0.797 Sum_probs=19.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
.+|.+++ |.|.||||++--|++.|
T Consensus 10 ~~i~i~G----~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDG----PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4676666 78999999988887776
No 453
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=31.00 E-value=1.6e+02 Score=28.27 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecccC-CCcHHHHH-------HHHHHHHHcCCCe-EEEcCcc
Q 008480 433 EAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAELN-------AVRNAAMAAGAFD-AVVCSHH 489 (564)
Q Consensus 433 e~G~~NL~kHIeNi~~fGvPvVVAIN~F~-tDT~aEi~-------~v~~~~~~~G~~~-~~vs~~w 489 (564)
++....+++.|+..+.+|.|.||.- -.+ .+++++++ .+.+.|++.|+.- +++-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence 4557789999999999999999873 222 24555543 4456677889940 4554553
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=30.99 E-value=39 Score=33.28 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=23.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCC
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP 116 (564)
+++||| |.|.||||+---|.. + .-|++ +++=+|..|=
T Consensus 6 v~~i~G----~~GaGKTTll~~l~~-~--~~~~~--~aVi~~d~G~ 42 (318)
T 1nij_A 6 VTLLTG----FLGAGKTTLLRHILN-E--QHGYK--IAVIENEFGE 42 (318)
T ss_dssp EEEEEE----SSSSSCHHHHHHHHH-S--CCCCC--EEEECSSCCS
T ss_pred EEEEEe----cCCCCHHHHHHHHHh-h--cCCCc--EEEEEecCcc
Confidence 566666 789999998654432 2 23554 3344678774
No 455
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=30.94 E-value=17 Score=37.10 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=35.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lRePS 113 (564)
..+.+|++-|+ -|.||||+.-=|.+.|+ -.|.+ +.++++|+
T Consensus 84 ~~~vlIvfEG~----DgAGKgt~Ik~L~e~Ld-prg~~-V~~~~~Pt 124 (304)
T 3czq_A 84 GKRVMAVFEGR----DAAGKGGAIHATTANMN-PRSAR-VVALTKPT 124 (304)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTSC-TTTEE-EEECCSCC
T ss_pred CCCeEEEEeCC----CCCCHHHHHHHHHHHhc-ccCCe-EEEeCCcC
Confidence 45889999998 69999999999999995 66876 67799998
No 456
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=30.82 E-value=45 Score=23.89 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCCeEEEcCccc
Q 008480 460 FATDSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (564)
Q Consensus 460 F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wa 490 (564)
|..-|++|+..+++.++++.++ + +-|.
T Consensus 9 wvggtpeelkklkeeakkanir-v---tfwg 35 (36)
T 2ki0_A 9 WVGGTPEELKKLKEEAKKANIR-V---TFWG 35 (36)
T ss_dssp CBCCCHHHHHHHHHHHHHHCCC-C---CBCC
T ss_pred EecCCHHHHHHHHHHHHhccEE-E---Eeec
Confidence 6678999999999999999886 4 5564
No 457
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=30.74 E-value=18 Score=33.73 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
++..|.+.| |-|.||||+.--|++.|+
T Consensus 26 ~~~~i~l~G----~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILG----PPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEEC----CTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 367888888 569999999888887774
No 458
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=30.54 E-value=20 Score=31.09 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-|+++| |.|.||||++.-+++.+.
T Consensus 40 ~~ll~G----~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSG----PPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEEC----STTSSHHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 388888 689999999999998884
No 459
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=30.45 E-value=1.1e+02 Score=30.46 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=51.1
Q ss_pred ceEEEEeehhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecc-cCCCcHHHHHHHH
Q 008480 394 QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FATDSKAELNAVR 472 (564)
Q Consensus 394 ~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~-F~tDT~aEi~~v~ 472 (564)
|.+-+|--+.+||-. . +++-.+++.++.+-+ . |.|+=|.|.. +- |++|+....
T Consensus 126 dEIDmViNig~lk~g--~----------~~~v~~eI~~v~~a~-----------~-~~~lKVIlEt~~L--t~eei~~A~ 179 (260)
T 3r12_A 126 DEIDMVINVGMLKAK--E----------WEYVYEDIRSVVESV-----------K-GKVVKVIIETCYL--DTEEKIAAC 179 (260)
T ss_dssp SEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT-----------T-TSEEEEECCGGGC--CHHHHHHHH
T ss_pred CEEEEEeehhhhccc--c----------HHHHHHHHHHHHHhc-----------C-CCcEEEEEeCCCC--CHHHHHHHH
Confidence 667788888887632 1 223333343333321 1 6677677664 22 679999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchHH
Q 008480 473 NAAMAAGAFDAVVCSHHAHGGKGAVD 498 (564)
Q Consensus 473 ~~~~~~G~~~~~vs~~wakGGeGa~e 498 (564)
+.|.++|+..+=.|+.|..||.--.+
T Consensus 180 ~ia~eaGADfVKTSTGf~~~GAT~ed 205 (260)
T 3r12_A 180 VISKLAGAHFVKTSTGFGTGGATAED 205 (260)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCHHH
T ss_pred HHHHHhCcCEEEcCCCCCCCCCCHHH
Confidence 99999999744478889888765444
No 460
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=30.38 E-value=40 Score=36.62 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
+.|.+|.+.|- -|.|||||.--|+--+ ..-|.+..+
T Consensus 291 ~~GeVI~LVGp----NGSGKTTLl~~LAgll-~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGV----NGVGKTTTIGKLARQF-EQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECC----TTSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cCCeEEEEECC----CcccHHHHHHHHHHHh-hhcCCeEEE
Confidence 45889988885 4999999998887666 344555443
No 461
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=30.21 E-value=49 Score=34.10 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=27.1
Q ss_pred hhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 59 VLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 59 ~l~~~~-~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-|+++- .-+.|.+++|+| |-|.||||.+.-++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G----~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAA----RPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEE----CTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 445432 235799999998 579999999988887773
No 462
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=30.04 E-value=40 Score=34.74 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=27.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
.+.|-||+.+ |||||+-=|.+.| ...|+++.
T Consensus 104 ~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 134 (439)
T 2x5o_A 104 APIVAITGSN------GKSTVTTLVGEMA-KAAGVNVG 134 (439)
T ss_dssp SCEEEEECSS------SHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 6799999987 9999999999999 57898865
No 463
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=29.92 E-value=1.6e+02 Score=28.69 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=53.4
Q ss_pred HHHHhhcCCcEEEEecccCCC-------cHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCc
Q 008480 443 IANTKAYGANVVVAVNMFATD-------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tD-------T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk 515 (564)
.+..+++|+|++ +|-++.. |++++....+.|.++|+. ++- ..|. |..+.-+++++.+.. .+..
T Consensus 131 ~~~~~~~~~~vI--i~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD-~vk-t~~~----~~~e~~~~~~~~~~~--~pV~ 200 (263)
T 1w8s_A 131 KRDAVKFDLPLV--VESFPRGGKVVNETAPEIVAYAARIALELGAD-AMK-IKYT----GDPKTFSWAVKVAGK--VPVL 200 (263)
T ss_dssp HHHHHHHTCCEE--EEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS-EEE-EECC----SSHHHHHHHHHHTTT--SCEE
T ss_pred HHHHHHcCCeEE--EEeeCCCCccccCCCHHHHHHHHHHHHHcCCC-EEE-EcCC----CCHHHHHHHHHhCCC--CeEE
Confidence 344556999975 5777621 677888888889999996 532 2353 245555666666521 1222
Q ss_pred ccCCCCC-CHHHHHHHHHh--HhCCCceeeCHH
Q 008480 516 FLYPLDV-SIKEKIDTIAR--SYGASGVEYSEE 545 (564)
Q Consensus 516 ~LYd~~~-~I~eKIetIA~--IYGA~~V~~S~~ 545 (564)
-.=-... +.++=++.|.. -.||+++.....
T Consensus 201 asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgra 233 (263)
T 1w8s_A 201 MSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN 233 (263)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehh
Confidence 2212222 55555555544 367777766543
No 464
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=29.79 E-value=20 Score=36.19 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|+.|+|+| |-|.||||+.--|..-+
T Consensus 173 ~~G~~i~ivG----~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAG----ETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEE----SSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEEC----CCCCCHHHHHHHHHhcC
Confidence 4588999998 45999999877775544
No 465
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=29.68 E-value=17 Score=32.39 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=15.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHH
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~q 95 (564)
.|.+|| |-|.||||++--|++
T Consensus 3 ~i~i~G----~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTG----NIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHH
T ss_pred EEEEEC----CCCcCHHHHHHHHHH
Confidence 567777 479999998766655
No 466
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=29.52 E-value=1.3e+02 Score=30.21 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=62.2
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-ccc------CCCcHHH-------HHHHHHHHHHcC--CCeEEEcC
Q 008480 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMF------ATDSKAE-------LNAVRNAAMAAG--AFDAVVCS 487 (564)
Q Consensus 424 l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAI-N~F------~tDT~aE-------i~~v~~~~~~~G--~~~~~vs~ 487 (564)
+..++-+.-++.+..+.+.|+..+.+|.+.||.- ... ..|.++. ++.+.+.+++.| +. +++-+
T Consensus 103 l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE~ 181 (386)
T 1muw_A 103 FTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIR-FAIEP 181 (386)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEee
Confidence 3345666678889999999999999999998753 221 2344443 344555667788 85 77766
Q ss_pred cccc--Ccc--chHHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHH
Q 008480 488 HHAH--GGK--GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIA 532 (564)
Q Consensus 488 ~wak--GGe--Ga~eLA~~Vvea~e~~~~~fk~LYd~------~~~I~eKIetIA 532 (564)
+... ++. ...+-+.++++.+.. ++.+..++|. ..++.+-|+...
T Consensus 182 ~~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~l~~~~ 235 (386)
T 1muw_A 182 KPNEPRGDILLPTVGHALAFIERLER-PELYGVNPEVGHEQMAGLNFPHGIAQAL 235 (386)
T ss_dssp CSSSSSSEESSCSHHHHHHHHTTSSS-GGGEEECCBHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCcccccCCCHHHHHHHHHHhCC-ccceEEEeeccchhhcCCCHHHHHHHhc
Confidence 6321 110 123334455554432 1126666654 345555555543
No 467
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=29.49 E-value=58 Score=33.94 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred hHHHHHHHHhhcCCc-EEEEecccCCC--cHHHHH----HHHHHHHHcCC
Q 008480 438 NLARHIANTKAYGAN-VVVAVNMFATD--SKAELN----AVRNAAMAAGA 480 (564)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAIN~F~tD--T~aEi~----~v~~~~~~~G~ 480 (564)
....|+..++..|+| +||++|+..-. +++.++ .+++++++.|+
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 456788888889997 89999997642 344443 34555666664
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=29.18 E-value=28 Score=32.29 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEEEecCC
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~~lReP 112 (564)
+.|++|.+.|. -|.||||+. +.|. .++.+ +...++|
T Consensus 18 ~~g~~i~i~G~----~GsGKSTl~----~~L~-~~~g~-v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGN----IGSGKTTYL----NHFE-KYKND-ICLLTEP 53 (230)
T ss_dssp CCCEEEEEECS----TTSCHHHHH----HTTG-GGTTT-EEEECCT
T ss_pred CCceEEEEECC----CCCCHHHHH----HHHH-hccCC-eEEEecC
Confidence 56999999985 699999965 4443 33322 4445665
No 469
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=29.12 E-value=2e+02 Score=30.27 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCceeeccccch---hhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEe---ec
Q 008480 297 AGDPITADDLGVG---GALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT---EA 370 (564)
Q Consensus 297 ~g~pVta~DL~~~---GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVT---EA 370 (564)
..+++|..=++.- ||+-++ +-+++.=.+||| +.||.+-.-.-.......+-.++-| |-
T Consensus 7 ~~~~~~~nP~k~C~~~GA~~~~----------~~i~~~~~ivHG------p~GC~~~~~~~~~r~f~e~~~~~sT~l~E~ 70 (458)
T 3pdi_B 7 RNKALAVSPLKASQTMGAALAI----------LGLARSMPLFHG------SQGCTAFAKVFFVRHFREPVPLQTTAMDQV 70 (458)
T ss_dssp CCCSCEESCCCCCHHHHHHHHH----------TTBTTEEEEEES------CHHHHHHHHHHHHHHHCSCCCCEECCCCTT
T ss_pred CCcccccCccccChHHHHHHHH----------HhhcCeEEEeec------CchhhhhhHHHHHhhcCCCcceeeeccccc
Confidence 4567777766653 666655 457888899999 5799987644344444322222222 22
Q ss_pred c--ccccccccccccccccc-CCCCcceEEEEeehh
Q 008480 371 G--FGADIGAEKFMNIKCRY-SGLTPQCAVIVATIR 403 (564)
Q Consensus 371 G--FGaDlGaEKF~dIkcr~-~gl~P~avVlVaTvR 403 (564)
- || |-+|..+--... .-.+|++++|++|+-
T Consensus 71 d~VfG---g~~~L~~~I~~~~~~~~P~~I~V~tTC~ 103 (458)
T 3pdi_B 71 SSVMG---ADENVVEALKTICERQNPSVIGLLTTGL 103 (458)
T ss_dssp TTSSC---SHHHHHHHHHHHHHHTCCSEEEEEECHH
T ss_pred ccccC---cHHHHHHHHHHHHHhcCCCEEEEECCcH
Confidence 2 55 234443221111 124799999999974
No 470
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=29.09 E-value=22 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.1
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
.|.|++ |.|.||||+.--|...+. .-|.+
T Consensus 4 ~v~IvG----~SGsGKSTL~~~L~~~~~-~~g~~ 32 (171)
T 2f1r_A 4 ILSIVG----TSDSGKTTLITRMMPILR-ERGLR 32 (171)
T ss_dssp EEEEEE----SCHHHHHHHHHHHHHHHH-HTTCC
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCc
Confidence 455666 569999999998888773 44543
No 471
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=28.96 E-value=18 Score=41.40 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL 93 (564)
|.+|+|+||+. .|+||||++-..
T Consensus 34 P~~~l~viTGv----SGSGKSSLafdt 56 (842)
T 2vf7_A 34 PRDALVVFTGV----SGSGKSSLAFGT 56 (842)
T ss_dssp ESSSEEEEESS----TTSSHHHHHTTT
T ss_pred cCCCEEEEECC----CCCCHHHHHHHH
Confidence 78999999997 699999998763
No 472
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=28.85 E-value=18 Score=32.71 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=16.9
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|++|| |-|.||||++--|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMG----LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHS
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 56666 46999999888877665
No 473
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=28.81 E-value=33 Score=36.49 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.+.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 121 ~~~vIaVTGTn------GKTTTt~li~~iL-~~~G~~~~ 152 (524)
T 3hn7_A 121 SRHVIAVAGTH------GKTTTTTMLAWIL-HYAGIDAG 152 (524)
T ss_dssp GSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred cCcEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 35689999987 9999999999999 58898764
No 474
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=28.72 E-value=19 Score=42.20 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
|++|+|+||+. .|+|||+++-.-.-
T Consensus 44 P~~~lvv~tG~----SGSGKSSLafdtly 68 (993)
T 2ygr_A 44 PRDALIVFTGL----SGSGKSSLAFDTIF 68 (993)
T ss_dssp ESSSEEEEEES----TTSSHHHHHTTTHH
T ss_pred cCCCEEEEECC----CCCcHHHHHHHHHH
Confidence 78999999996 69999999887543
No 475
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=28.70 E-value=19 Score=33.27 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+|.+++ |.|.||||++--|++-|+
T Consensus 8 iI~i~g----~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGR----EFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHHHTT
T ss_pred EEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 566655 689999999988888774
No 476
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.52 E-value=70 Score=28.92 Aligned_cols=81 Identities=10% Similarity=0.008 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCcE-EEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccC
Q 008480 440 ARHIANTKAYGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (564)
Q Consensus 440 ~kHIeNi~~fGvPv-VVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LY 518 (564)
.+-++.+++.|++. -|.+|++...+.. +.+++.++..|.+ +. ...-. -..+.++...+ .. -+.|
T Consensus 152 ~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~---------~~~~~~a~~~g-~~-v~~~ 216 (237)
T 1g3q_A 152 MKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAEDVMEVP-LL-AVIPE---------DPAIREGTLEG-IP-AVKY 216 (237)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHHHHHCSC-EE-EEEEC---------CHHHHHHHHHT-SC-HHHH
T ss_pred HHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHHHHhCcc-ce-eeCCC---------ChHHHHHHHcC-CC-eEEe
Confidence 33444455557654 4788999875443 2233334456765 32 21111 12233334332 11 1234
Q ss_pred CCCCCHHHHHHHHHh-Hh
Q 008480 519 PLDVSIKEKIDTIAR-SY 535 (564)
Q Consensus 519 d~~~~I~eKIetIA~-IY 535 (564)
..+.+...-++.+|+ +.
T Consensus 217 ~~~~~~~~~~~~la~~l~ 234 (237)
T 1g3q_A 217 KPESKGAKAFVKLAEEIE 234 (237)
T ss_dssp STTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 455677788888887 64
No 477
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=28.33 E-value=45 Score=35.68 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 69 gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
..+|+++|. -|.||||++.-|++.|+ ..+.++
T Consensus 35 ~~lIvlvGl----pGSGKSTia~~La~~L~-~~~~d~ 66 (520)
T 2axn_A 35 PTVIVMVGL----PARGKTYISKKLTRYLN-WIGVPT 66 (520)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHh-hcCCCe
Confidence 458889987 59999999999999995 677765
No 478
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=28.19 E-value=3.9e+02 Score=26.56 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=52.8
Q ss_pred cccccccHHHHHHHHhhHHHHHHHHhh----------------------cCCcEEEEe--cccCCCcHHHHHHHHHHHHH
Q 008480 422 HAYLNENVALVEAGCVNLARHIANTKA----------------------YGANVVVAV--NMFATDSKAELNAVRNAAMA 477 (564)
Q Consensus 422 ~~l~~eNl~aLe~G~~NL~kHIeNi~~----------------------fGvPvVVAI--N~F~tDT~aEi~~v~~~~~~ 477 (564)
.++-++|.+++.+-+..|.+.++..-. ||+.++-.. +--..=|.++|+.+.+.+++
T Consensus 165 a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~ 244 (313)
T 1toa_A 165 TREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQ 244 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHH
Confidence 455567888888888888887765422 455543221 22234578999999999999
Q ss_pred cCCCeEEEcCccccCccchHHHHHHHHHH
Q 008480 478 AGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (564)
Q Consensus 478 ~G~~~~~vs~~wakGGeGa~eLA~~Vvea 506 (564)
.+++ +++.+.... -.+++.|.++
T Consensus 245 ~~v~-~If~e~~~~-----~~~~~~la~~ 267 (313)
T 1toa_A 245 RKLP-AIFIESSIP-----HKNVEALRDA 267 (313)
T ss_dssp TTCS-EEEEETTSC-----THHHHHHHHH
T ss_pred cCCC-EEEEeCCCC-----hHHHHHHHcc
Confidence 9997 777766543 4556676644
No 479
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=28.06 E-value=92 Score=30.46 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEE
Q 008480 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (564)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~v 485 (564)
...+-|+.+++.|+|+.+-.--++..+++|+..+.+++++.|+. +..
T Consensus 147 ~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~ 193 (340)
T 1tv8_A 147 TILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRF 193 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEE
Confidence 44455666677888765444345555778999999999999985 443
No 480
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=28.02 E-value=2.3e+02 Score=30.34 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=90.3
Q ss_pred CCceeeccccc---hhhHHHHhhhccCcCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEe-----e
Q 008480 298 GDPITADDLGV---GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVT-----E 369 (564)
Q Consensus 298 g~pVta~DL~~---~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVT-----E 369 (564)
.++.+..-.+. .||+.+++ .+++.=.+||| +.||.+-+-.-+......+-.++.| +
T Consensus 57 ~~~~~~np~~~C~~~GA~~a~~----------~I~d~~~ivHG------p~GC~~y~r~~~~~~f~e~~~~~sT~l~E~d 120 (519)
T 1qgu_B 57 REALTVDPAKACQPLGAVLCSL----------GFANTLPYVHG------SQGCVAYFRTYFNRHFKEPIACVSDSMTEDA 120 (519)
T ss_dssp CSSCEESCSCCCHHHHHHHHHH----------TBTTEEEEEES------CHHHHHHHHHHHHHHHTSCCCCEECCCCTTH
T ss_pred ccccccCccccchHHHHHHHHh----------ccCCeEEEEEC------ChHHHHhHHhhhhhccCCCcceeeccccccc
Confidence 34444444422 46666654 46777789999 6799876544344444322233432 2
Q ss_pred ccccccccccccccccccc--CCCCcceEEEEeehhH-------------HHhcC----CCCCccCCCCCccccccccHH
Q 008480 370 AGFGADIGAEKFMNIKCRY--SGLTPQCAVIVATIRA-------------LKMHG----GGPQVVAGKPLDHAYLNENVA 430 (564)
Q Consensus 370 AGFGaDlGaEKF~dIkcr~--~gl~P~avVlVaTvRA-------------LK~HG----G~~~~~~g~PLp~~l~~eNl~ 430 (564)
+=|| |-+|..+- ++. .-.+|++++|++|+-+ ++-.+ |.+....- - +.+...-..
T Consensus 121 ~VfG---g~~kL~~a-I~~~~~~~~P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~~~p~g~pVi~v~--t-pgf~gs~~~ 193 (519)
T 1qgu_B 121 AVFG---GNNNMNLG-LQNASALYKPEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAH--T-PSFIGSHVT 193 (519)
T ss_dssp HHHC---SHHHHHHH-HHHHHHHHCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCTTSBCCBCC--C-CTTSSCHHH
T ss_pred cccC---CHHHHHHH-HHHHHHhhCCCEEEEeCCCcHHHhCCCHHHHHHHHHHhcCCCCCCcEEEee--C-CCcCCChhH
Confidence 4566 55664432 111 1248999999998743 22221 33221111 0 122221122
Q ss_pred HHHHHHhhHHHHHHHH-hhc--CCcEEEEecccCCCc-HHHHHHHHHHHHHcCCCeEE-Ec--------------Ccccc
Q 008480 431 LVEAGCVNLARHIANT-KAY--GANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAV-VC--------------SHHAH 491 (564)
Q Consensus 431 aLe~G~~NL~kHIeNi-~~f--GvPvVVAIN~F~tDT-~aEi~~v~~~~~~~G~~~~~-vs--------------~~wak 491 (564)
.-..-+.-|.+|+-.- ..- .-+-|-.|--| ++ ..++..|+++.++.|++ +. +. ..|.
T Consensus 194 G~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~--~~~~gD~~eik~lL~~~Gi~-v~~lpd~s~~ld~~~~~~~~~~~- 269 (519)
T 1qgu_B 194 GWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGF--ETYLGNFRVLKRMMEQMAVP-CSLLSDPSEVLDTPADGHYRMYS- 269 (519)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCS--CCCHHHHHHHHHHHHHHTCC-EEESSCTTTTTSCCCSSCCCSCC-
T ss_pred HHHHHHHHHHHHhhccccccCCCCCcEEEECCC--CCCcccHHHHHHHHHHcCCe-EEEecCccccccCcccCcccccC-
Confidence 3333333333443211 011 11223333334 44 88889999999999997 43 22 4788
Q ss_pred CccchHHHH
Q 008480 492 GGKGAVDLG 500 (564)
Q Consensus 492 GGeGa~eLA 500 (564)
||..-.||.
T Consensus 270 gg~~~~ei~ 278 (519)
T 1qgu_B 270 GGTTQQEMK 278 (519)
T ss_dssp CCBCHHHHH
T ss_pred CCCCHHHHH
Confidence 887766655
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=28.01 E-value=74 Score=27.40 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=30.6
Q ss_pred hcCCcEEEEecccCCCcHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchHHHHHHHHH
Q 008480 448 AYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (564)
Q Consensus 448 ~fGvPvVVAIN~F~tDT~aEi~~v~~~~~-----~~G~~~~~vs~~wakGGeGa~eLA~~Vve 505 (564)
..++|+|+++|+..-..+.+.+.+.+... +.++. +. ..=++-|+|-.+|-+.+++
T Consensus 120 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQ--ACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHT
T ss_pred hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE-EE--EccCCCCcCHHHHHHHHHh
Confidence 36899999999976533222223333322 12222 22 3336777887777666543
No 482
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.95 E-value=39 Score=28.03 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHccCCCCCHHHHHHHcCCCCcccccc-------cCceeeec
Q 008480 22 IANSVEPLHISEIAQELNLKPNHYDLY-------GKYKAKVL 56 (564)
Q Consensus 22 Ia~~~~~~pI~~ia~~lgl~~~~l~~Y-------G~~kAKi~ 56 (564)
+++--+--.|+.+|+.++|+++++|.+ |+..||||
T Consensus 24 is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akID 65 (84)
T 1ufm_A 24 ASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFID 65 (84)
T ss_dssp HHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEE
T ss_pred HHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEe
Confidence 444445567899999999999998754 77777776
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=27.77 E-value=39 Score=34.87 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttI 91 (564)
+.|.++.+.+ |-|.||||+.-
T Consensus 28 ~~Ge~~~llG----psGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFIIG----ASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEEE----STTSSHHHHHH
T ss_pred cCCCEEEEEC----CCCchHHHHHH
Confidence 5688888887 78999999754
No 484
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=27.74 E-value=51 Score=31.43 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=39.4
Q ss_pred HHHHhhcCCcEEEEecccCCCcHHH--HHHHHHHHHHcCCCeEEEcCccccC---ccchHHHHHHHHHHhhc
Q 008480 443 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 509 (564)
Q Consensus 443 IeNi~~fGvPvVVAIN~F~tDT~aE--i~~v~~~~~~~G~~~~~vs~~wakG---GeGa~eLA~~Vvea~e~ 509 (564)
++.++..+.|+|+++|+..-..+.+ .+.+++.....+...+.++..-+.+ |.|-.+|-+.+.+....
T Consensus 191 ~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 191 AKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 3345568999999999976533322 3333311111113323344444555 88888888888887754
No 485
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=27.68 E-value=39 Score=35.23 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 66 ~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
-+.|.+++|+| |.|.||||.+.-++..+.
T Consensus 239 l~~G~l~li~G----~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTS----GSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEE----SSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEee----cCCCCchHHHHHHHHHHH
Confidence 46799999999 569999999998887773
No 486
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=27.47 E-value=22 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.5
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 72 IlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
|+++|. -|.||||.+--|++.|
T Consensus 3 I~l~G~----~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGA----PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred EEEECC----CCCCHHHHHHHHHHHh
Confidence 666664 5999999988887766
No 487
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=27.25 E-value=28 Score=35.50 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+|+=||.|| |.|.||||++..|.+
T Consensus 146 ~g~gvli~G----~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTG----RSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHT
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHH
Confidence 577788887 789999999988854
No 488
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=27.24 E-value=55 Score=34.21 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCce
Q 008480 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (564)
Q Consensus 58 ~~l~~~~-~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~ 105 (564)
.-|+++- .-+.|.+|+|+| +-|.||||.+.-++.... .-|.++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG----~pG~GKTtlal~ia~~~a-~~g~~v 228 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNMS-DNDDVV 228 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEE----CSSSSHHHHHHHHHHHHH-HTTCEE
T ss_pred HHHHhhcCCCCCCcEEEEEe----CCCCChHHHHHHHHHHHH-HcCCEE
Confidence 3455432 235799999999 469999999998888774 335443
No 489
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=27.14 E-value=2.8e+02 Score=27.69 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred cCCcEEEEecc----cCCCcHHHHHHHHH---HHHHcCCCeEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCC
Q 008480 449 YGANVVVAVNM----FATDSKAELNAVRN---AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (564)
Q Consensus 449 fGvPvVVAIN~----F~tDT~aEi~~v~~---~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~ 521 (564)
..+||.|-|.- |.-+ ++|++..++ .|+++|+..+++ -.-..-|.=-.+.-+++++++..-+-.|+-.+|.-
T Consensus 50 ~~ipv~vMIRPR~GdF~Ys-~~E~~~M~~Di~~~~~~GadGvV~-G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~ 127 (256)
T 1twd_A 50 VTIPVHPIIRPRGGDFCYS-DGEFAAILEDVRTVRELGFPGLVT-GVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMC 127 (256)
T ss_dssp CCSCEEEBCCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEE-CCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGC
T ss_pred cCCceEEEECCCCCCCcCC-HHHHHHHHHHHHHHHHcCCCEEEE-eeECCCCCcCHHHHHHHHHHhCCCcEEEECchhcc
Confidence 58999999985 6554 888888766 578999986554 33333333334455778888753233588888876
Q ss_pred CCHHHHHHHHHhHhCCCceeeC
Q 008480 522 VSIKEKIDTIARSYGASGVEYS 543 (564)
Q Consensus 522 ~~I~eKIetIA~IYGA~~V~~S 543 (564)
....+-++++... |-+.|-=|
T Consensus 128 ~d~~~ale~L~~l-G~~rILTS 148 (256)
T 1twd_A 128 ANPLYTLNNLAEL-GIARVLTS 148 (256)
T ss_dssp SCHHHHHHHHHHH-TCCEEEEC
T ss_pred CCHHHHHHHHHHc-CCCEEECC
Confidence 6667778877764 66666544
No 490
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.09 E-value=97 Score=27.43 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=18.9
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecccCCC
Q 008480 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATD 463 (564)
Q Consensus 432 Le~G~~NL~kHIeNi~~fGvPvVVAIN~F~tD 463 (564)
+..-+..+..+.+....-++|+++++|+..-.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 102 TAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred HHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 33334444443333234689999999997543
No 491
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=27.08 E-value=34 Score=30.57 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=19.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 70 klIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
+.|+|+| +.|.||||+..-|+..+.
T Consensus 31 ~~i~i~G----~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMG----AIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEE----CTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEc----CCCCCHHHHHHHHHHHhc
Confidence 4566777 779999999988888874
No 492
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.05 E-value=16 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred HHhhcCCCCCCCCCCHHHHhhhhcC
Q 008480 198 LKKLGISKTKPEDLTPEEINRFARL 222 (564)
Q Consensus 198 l~~l~i~~~~p~~l~~~~~~~~~~L 222 (564)
++++||+.+.-.+||++|+.++...
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH
Confidence 5789997777999999999988765
No 493
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=27.03 E-value=21 Score=41.67 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~ 94 (564)
|++|+|+||+. .|+|||+++-.-.
T Consensus 42 P~~~lvv~tG~----SGSGKSSLafdtl 65 (972)
T 2r6f_A 42 PRGKLVVLTGL----SGSGKSSLAFDTI 65 (972)
T ss_dssp ETTSEEEEEES----TTSSHHHHHTTTH
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHH
Confidence 78999999996 6999999987754
No 494
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=26.99 E-value=2.1e+02 Score=29.01 Aligned_cols=42 Identities=24% Similarity=0.059 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEcCccccCccch--HHHHHHHHH
Q 008480 464 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA--VDLGIAVQR 505 (564)
Q Consensus 464 T~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa--~eLA~~Vve 505 (564)
|++|+....+.|.++|+..+=.|+.|..||.-- ++|-+++++
T Consensus 186 t~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v~ 229 (288)
T 3oa3_A 186 TADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCD 229 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHHH
Confidence 678999999999999997334677898777543 344455554
No 495
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=26.91 E-value=58 Score=33.18 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.7
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 008480 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (564)
Q Consensus 58 ~~l~~~~-~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~ 104 (564)
.-|+++- .-+.|.+|+|+| +-|.||||.+.-++..+. .-|.+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG----~pG~GKTt~al~ia~~~a-~~g~~ 76 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGA----RPSMGKTSLMMNMVLSAL-NDDRG 76 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEE----CTTSCHHHHHHHHHHHHH-HTTCE
T ss_pred hHHHHHhcCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 3455432 235699999999 568999999998888773 43433
No 496
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=26.90 E-value=39 Score=35.47 Aligned_cols=32 Identities=34% Similarity=0.245 Sum_probs=27.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceE
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~ 106 (564)
+.++|-||+.| |||||+-=|.+.| ...|+++.
T Consensus 107 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 138 (498)
T 1e8c_A 107 NLRLVGVTGTN------GKTTTTQLLAQWS-QLLGEISA 138 (498)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCeEEEEeCCc------ChHHHHHHHHHHH-HhCCCCEE
Confidence 46789999886 9999999999999 47888754
No 497
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=26.74 E-value=35 Score=33.05 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 71 lIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|+++| |.|.||||+.--+.+.+.
T Consensus 46 ~~li~G----~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLG----RPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHHT
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 888988 689999999988888773
No 498
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.61 E-value=30 Score=37.32 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 68 ~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
.|+-+++++ |-|.||||++..|+..+.
T Consensus 59 ~g~~vll~G----p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIG----EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEEC----CTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEe----CCCCCHHHHHHHHhccCC
Confidence 356778877 669999999999988773
No 499
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=26.60 E-value=36 Score=30.87 Aligned_cols=25 Identities=44% Similarity=0.493 Sum_probs=18.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~q 95 (564)
+.|+++.+.| |-|.||||+.--|+.
T Consensus 18 ~~Gei~~l~G----pnGsGKSTLl~~l~g 42 (207)
T 1znw_A 18 AVGRVVVLSG----PSAVGKSTVVRCLRE 42 (207)
T ss_dssp -CCCEEEEEC----STTSSHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHh
Confidence 5688887776 789999998776643
No 500
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.43 E-value=42 Score=33.06 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 008480 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (564)
Q Consensus 67 ~~gklIlVTaitPTP~GEGKtTttIGL~qaL 97 (564)
+.|.+++++| |.|.||||++.-|+...
T Consensus 105 ~~G~i~~i~G----~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFG----EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEC----CCCCCHhHHHHHHHHHH
Confidence 5689999998 67999999988776543
Done!