BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008481
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/466 (69%), Positives = 397/466 (85%)
Query: 99 VDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREA 158
+DQ L+Q +VYDALVWS+L+ L+VGD+SVQRSG+VPGVGLVH P +LLP FPESH+++
Sbjct: 34 IDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQG 93
Query: 159 CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHR 218
CELAPIFNELVDRVSLDGKFLQESLSRTK D FTSRLLDIHSKML++NKKEDIR+G+ R
Sbjct: 94 CELAPIFNELVDRVSLDGKFLQESLSRTKNADEFTSRLLDIHSKMLQINKKEDIRMGIVR 153
Query: 219 SDYMLDEQTKSLLQIEVNTIXXXXXXXXXXXXELHRSLLIHYGERLGLDSKKVPGNSAVI 278
SDYM+DE+TKSLLQIE+NTI LH+SLL YG+ LGL+S +VP N+AV
Sbjct: 154 SDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLLSQYGKFLGLNSNRVPANNAVD 213
Query: 279 QFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTLAEIDAE 338
Q AEA+AKAW+EYNN RA +LVVVQ EE NMY+QH++S++L+E+H++ +IRKTL EID E
Sbjct: 214 QSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSIRKTLTEIDQE 273
Query: 339 GELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGT 398
G++LPDGTL V GQ I+VVYFRAGY P DYPSESEWRARLLMEQSSA+KCP+ISYHL GT
Sbjct: 274 GKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGT 333
Query: 399 KKIQQELAKPNVLERFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREG 458
KKIQQELAKP VLERF++NK+ IAK+R CFAGLWSL+DS+IV KAIENPEL+VMKPQREG
Sbjct: 334 KKIQQELAKPGVLERFVENKDHIAKLRACFAGLWSLEDSDIVKKAIENPELFVMKPQREG 393
Query: 459 GGNNIYGEDVKETLLRLKKDGTDEDAAYILMQRIFPSVSLTFLMRDGICHKDHAISELGI 518
GGNNIYG++++ETLL+L++ G+ EDAAYILMQRIFP+ S L+RDG H ISE GI
Sbjct: 394 GGNNIYGDELRETLLKLQEAGSQEDAAYILMQRIFPATSPAILVRDGNWDTGHVISEAGI 453
Query: 519 YGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 564
+G YLR K+K+I+N +SGY++RTK++SS EGGV GF V+D++YLT
Sbjct: 454 FGTYLRNKDKIIINNESGYMVRTKISSSYEGGVLPGFGVVDTVYLT 499
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/432 (42%), Positives = 264/432 (61%), Gaps = 15/432 (3%)
Query: 140 HAPFALLPVSFPESHFREACELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDI 199
+APF L P P + +A + FN LVD VS + FL+++LS T K D FT+RL DI
Sbjct: 47 YAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDI 106
Query: 200 HSKMLELNKKEDIRLGLHRSDYMLD---EQTKSLLQIEVNTIXXXXXXXXXXXXELHRSL 256
H ++L+ + + LGL+RSDYM + + +L QIE+NTI +HR +
Sbjct: 107 HKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAVHRHV 166
Query: 257 LIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLS 316
L + ++ K+ N+ A +AKAW Y + ALVL++ Q +E N++DQ +
Sbjct: 167 LSVLSKT--KEAGKILSNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIE 224
Query: 317 SVLKERHNVTTIRKTLAEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRA 376
+ L R N+ IR+T +I +G L D L V GQ IAVVYFR GY P Y S W A
Sbjct: 225 NELLAR-NIHVIRRTFEDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQY-SLQNWEA 282
Query: 377 RLLMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLERFLDNK-EDIAKVRKCFAGLWSLD 435
RLL+E+S A KCP I+ LAGTKK+QQEL++P +LE L + E +A++R FAGL+SLD
Sbjct: 283 RLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLD 342
Query: 436 DSE----IVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDEDAAYILMQR 491
E +++A+ P +V+KPQREGGGNN+YGE++ + L +LK ++E A+YILM++
Sbjct: 343 VGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKD--SEERASYILMEK 400
Query: 492 IFPSVSLTFLMRDGICHK-DHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGG 550
I P L+R G + ISELGI+G Y+R ++ ++MN+ G+L+RTK +GG
Sbjct: 401 IEPEPFENCLLRPGSPARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGG 460
Query: 551 VAAGFAVLDSLY 562
VAAG AVLD+ Y
Sbjct: 461 VAAGVAVLDNPY 472
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/495 (33%), Positives = 260/495 (52%), Gaps = 44/495 (8%)
Query: 101 QDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACE 160
+D + +++ + W+ +GL + + + V +P + P P F EA +
Sbjct: 8 KDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASV----SPVTIYPTPIPRKCFDEAVQ 63
Query: 161 LAPIFNELVDRVSLDGKFLQESLSRTKKV-----DPFTSRLLDIHSKMLELN--KKEDIR 213
+ P+FNEL R++ D L +T + FT +L ++ L+ KK++ R
Sbjct: 64 IQPVFNELYARITQDMAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFR 123
Query: 214 LGLHRSDYMLDEQ--TKSLLQIEVNTIXXXXXXXXXXXXELHRSL--LIHYGERLGL--D 267
LG+ RSDY++D++ T+ + Q+E NT+ LH L Y + + D
Sbjct: 124 LGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLHSYLNRANKYDPKGPIYND 183
Query: 268 SKKVPGNSAVIQFAEAMAKAWTEYNNAR-------ALVLVVVQSEEHNMYDQHWLSSVLK 320
V +S + ++A+AKA Y + + +V +VQ E N++DQ L L
Sbjct: 184 QNMVISDSGYL-LSKALAKAVESYKSQQSSSTTSDPIVAFIVQRNERNVFDQKVLELNLL 242
Query: 321 ERHNVTTIRKTLAEI-------DAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESE 373
E+ ++R T ++ D G+L T Q IAVVY+R GY TDY SE +
Sbjct: 243 EKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDT----EQEIAVVYYRTGYTTTDYTSEKD 298
Query: 374 WRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLERFLDNKEDIAKVRKCFAGLWS 433
W ARL +E+S A+K P + L+G+KKIQQ L VL +++ + E + + K F ++
Sbjct: 299 WEARLFLEKSFAIKAPDLLTQLSGSKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP 358
Query: 434 LDDSEIVSK----AIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDEDAAYILM 489
LDD+++ + A+ P YV+KPQREGGGNN+Y E++ L +++ D AYILM
Sbjct: 359 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWD---AYILM 415
Query: 490 QRIFPSVSL-TFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNE 548
+ I P ++ ++RD + + ISELGIYG L E+V+ NE SG L+R+K +SNE
Sbjct: 416 ELIEPELNENNIILRDNKSYNEPIISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNE 475
Query: 549 GGVAAGFAVLDSLYL 563
GGVAAGF LDS+ L
Sbjct: 476 GGVAAGFGCLDSIIL 490
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 151/520 (29%), Positives = 238/520 (45%), Gaps = 95/520 (18%)
Query: 135 GVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLDGKFLQESLSRTKKVD-PFT 193
G G V P L P F C + P++NE VD + + FL+++L T D FT
Sbjct: 41 GPGRVPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFLRDALQETAASDVNFT 100
Query: 194 SRLLDIHSKM-LELNKKEDIRLGLHRSDYMLDEQTKSLL--------QIEVNTIXXXXXX 244
+LL++ ++ L + + LG+ R+DYM + +L +E+NTI
Sbjct: 101 GKLLNMLQEVYLSGGPFQQLMLGIFRTDYMREGVYDKMLSTTASRWKNVEINTISCSFAG 160
Query: 245 XXXXXXELHRSLLIH----------------------YGERLGLDSKKVPGNSAVIQFAE 282
E H+ + + +G+ + V G+ A+
Sbjct: 161 LSPLITEFHQHIAAYLQVLQKARGKEDDDGVENMSWIWGKGNCRLERSVSGDVVPKAIAD 220
Query: 283 AMAKAWTE---YNNARA-------------------------LVLVVVQSEEHNMYDQHW 314
A+ +AW E + + RA +VLVVVQ E N DQ+
Sbjct: 221 AV-RAWVEQQKFASLRASWEQFQQNEVGSGEIHQLGVLDTAPVVLVVVQENERNTADQYA 279
Query: 315 LSSVLKERHNVTTIRKTLAEIDAEGEL------LPDGTLLVGGQVIAVVYFRAGYAPTDY 368
L + E H + I +TL E+ +L P ++ G IAV YFR+ Y P D+
Sbjct: 280 LLMRVLEEHRIRFIFRTLQELHLSLKLHSISPEQPPLAVVDGHYPIAVAYFRSTYVPEDF 339
Query: 369 PSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPN---VLERFLDNKEDIAKVR 425
P+++ W ARL +E+SSA+KCPSI YHL KK+QQ L + V F + + ++
Sbjct: 340 PTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVDRVLVPVAFCGDSDKAGLLQ 399
Query: 426 KCFAGLWSLDDSEIVSKAIEN--------PELYVMKPQREGGGNNIYGEDVKETLLRLKK 477
+ F +SL+ E+ +A+E P+ +V+KPQ EGGGN + GE + + L+ K
Sbjct: 400 RHFVPQYSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEGGGNLLSGETMVKA-LKATK 458
Query: 478 DG-----TDEDAAYILMQRIFPSVSLTFLMRDG--ICHKDHAISELGIYGAYLRIKE--- 527
+G + Y++M RI VS L+ G + + + SE+GI+G L +
Sbjct: 459 EGDPVTYSKVRCEYVVMSRIQFHVSTGSLLARGDVVQLERNMCSEVGIFGVILSAAKGSS 518
Query: 528 ------KVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSL 561
V+ N +GY +R+K A +++GGV AG A LDSL
Sbjct: 519 VGTNGSSVLFNTFAGYTVRSKPADADDGGVMAGVAALDSL 558
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 108 VYDALVWSSLHGLVVGDRSVQRSGKVPG-VGLVHAPFALL-PVSFPESHFREACELAPIF 165
V+ + ++ LV GDR V R GKV G V VH L PV ++ + ++ I
Sbjct: 27 VHRCNIRRTIRSLVTGDRVVWRPGKVKGIVEAVHETSVLTRPVKPIAANIDQIVIVSAIL 86
Query: 166 NEL----VDRVSLDGKFLQ-ESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRL 214
EL +DR + + LQ E L K+D +D ++ +++ + R+
Sbjct: 87 PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRV 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,664,212
Number of Sequences: 62578
Number of extensions: 616641
Number of successful extensions: 1362
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 10
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)