Query 008481
Match_columns 564
No_of_seqs 147 out of 322
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kal_A Homoglutathione synthet 100.0 1E-175 4E-180 1402.3 41.4 475 90-564 24-499 (499)
2 2hgs_A Protein (glutathione sy 100.0 4E-166 1E-170 1326.2 38.8 456 97-564 8-474 (474)
3 1m0w_A Glutathione synthetase; 100.0 7E-166 2E-170 1329.1 36.5 459 96-564 4-491 (491)
4 2wyo_A Glutathione synthetase; 100.0 2E-160 6E-165 1296.6 30.1 457 100-564 14-561 (562)
5 3n6x_A Putative glutathionylsp 98.8 1.7E-08 5.7E-13 109.2 12.5 357 98-500 33-417 (474)
6 2vob_A Trypanothione synthetas 97.8 5E-05 1.7E-09 85.1 9.0 182 148-359 266-456 (652)
7 2io8_A Bifunctional glutathion 97.4 0.00026 8.9E-09 78.9 8.3 180 149-359 254-440 (619)
8 1gsa_A Glutathione synthetase; 67.8 26 0.00088 33.5 9.8 42 449-493 156-202 (316)
9 2lnm_A Protein TIC 40, chlorop 35.1 39 0.0013 26.3 4.0 33 399-431 25-60 (62)
10 1z2n_X Inositol 1,3,4-trisphos 28.3 64 0.0022 31.3 5.2 58 194-258 259-316 (324)
11 2fb9_A D-alanine:D-alanine lig 26.6 39 0.0013 33.4 3.4 47 191-245 248-295 (322)
12 2wx4_A DCP1, decapping protein 23.6 28 0.00097 26.4 1.2 26 178-203 13-39 (46)
13 4fu0_A D-alanine--D-alanine li 22.0 39 0.0013 34.0 2.4 44 191-239 274-317 (357)
14 1e4e_A Vancomycin/teicoplanin 22.0 58 0.002 32.3 3.6 48 191-244 267-314 (343)
15 1rso_B MLIN-2/CASK, peripheral 21.1 1.6E+02 0.0055 22.5 5.2 40 160-204 8-53 (56)
16 2ip4_A PURD, phosphoribosylami 20.7 1E+02 0.0034 31.4 5.1 56 448-506 137-197 (417)
17 1wrd_A TOM1, target of MYB pro 20.6 2.2E+02 0.0075 24.3 6.5 50 152-206 46-95 (103)
18 3se7_A VANA; alpha-beta struct 20.5 55 0.0019 32.6 3.1 43 191-238 267-309 (346)
No 1
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=100.00 E-value=1.3e-175 Score=1402.29 Aligned_cols=475 Identities=70% Similarity=1.146 Sum_probs=456.5
Q ss_pred ccccc-CCCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHH
Q 008481 90 TKEAL-NLQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNEL 168 (564)
Q Consensus 90 ~~~~~-~~~~l~~~~~~~l~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L 168 (564)
++|.+ +||.++++++++|+++|+|||++|||+|++++.+.++..+++.++|||||||||||||++|++|+++|++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~a~dwal~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~fe~a~~vq~~~NeL 103 (499)
T 3kal_A 24 AAPPLFDYHRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNEL 103 (499)
T ss_dssp -CCCCCCTTSSCHHHHHHHHHHHHHHHHHTTCEEECTTSTTTTTSTTSSEEECCEESSCEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHcCeEEecCCCccccccccccceecceEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 67755 99999999999999999999999999999998877766777889999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhh
Q 008481 169 VDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCL 248 (564)
Q Consensus 169 ~~rVS~D~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~ 248 (564)
||+||+|.+||.++|++++++|+||++||+||++|+++|++|+++|||||||||+|.+++++||||||||||||||||++
T Consensus 104 ~~~vs~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~l~Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~ 183 (499)
T 3kal_A 104 VDRVSLDGKFLQESLSRTKNADEFTSRLLDIHSKMLQINKKEDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCL 183 (499)
T ss_dssp HHHHHTCHHHHHHHTHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhhcCcCHHHHHHHHHHHHHHhcCCCCceeeeeeehhhhcCCCCCceEEEEeechhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEE
Q 008481 249 VSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTI 328 (564)
Q Consensus 249 vs~lHr~ll~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~vi 328 (564)
+++|||||++.|+.....+..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++|||+++
T Consensus 184 v~~lHr~l~~~~~~~~~~~~~~lp~N~a~~~la~gla~A~~~Y~~~~a~VLfVVQ~~ErNifDQr~lE~~L~~~~gI~vi 263 (499)
T 3kal_A 184 MTGLHKSLLSQYGKFLGLNSNRVPANNAVDQSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSI 263 (499)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGSCCCCHHHHHHHHHHHHHHHHTCTTCEEEEEECSSCTTHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcccccccccccCCCChhHHHHHHHHHHHHHHhCCCCcEEEEEEcCCCccHHhHHHHHHHHHHhCCCcEE
Confidence 99999999998876654555689999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhcccHHHHHhhcCh
Q 008481 329 RKTLAEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKP 408 (564)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vdg~EVAVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~p 408 (564)
|+||+||.++++++++++|+++|.||||||||+||+|+|||+|++|++|++||+|+|||||||+|||||||||||+|++|
T Consensus 264 R~t~~el~~~~~l~~~~~L~~~g~eVaVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p 343 (499)
T 3kal_A 264 RKTLTEIDQEGKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKP 343 (499)
T ss_dssp EECHHHHHHHEEECTTSCEEETTEEEEEEEEESCSSGGGCSSHHHHHHHHHHHHSSSEEETCHHHHHHTSHHHHHHTTST
T ss_pred EEEHHHHhhhceeCCCCeeEEcceEEEEEEeecCcCcccCCCHHHHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCHHHHHHHHHhccccccCCchHHHHHhhcCCCCccccCCCcCCCccccchhHHHHHHhccCCCCccccceee
Q 008481 409 NVLERFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDEDAAYIL 488 (564)
Q Consensus 409 gvLerFl~~~~~~~~lr~tFa~lysLD~~~~v~~A~~~P~~yVLKPQREGGGNNiYgedI~~~L~~l~~~~~~e~~aYIL 488 (564)
++||||+++++++++||+||++|||||+++++++|+++|++||||||||||||||||+||+++|++|+++|++||++|||
T Consensus 344 ~vLerFl~~~~~~~~lr~tFa~ly~LD~~~~~~~a~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~~~~e~~ayIL 423 (499)
T 3kal_A 344 GVLERFVENKDHIAKLRACFAGLWSLEDSDIVKKAIENPELFVMKPQREGGGNNIYGDELRETLLKLQEAGSQEDAAYIL 423 (499)
T ss_dssp TTHHHHCCCHHHHHHHHHHCCCEEETTCTTHHHHHHHCGGGEEEECSCCSSSCCBCHHHHHHHHHHCCC-----GGGCEE
T ss_pred hHHHHhcCCHHHHHHHHHHhhccCCCCchHHHHhhhhCHHHeeecccccCCccccchHHHHHHHHhcCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred ccccCCCCcceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008481 489 MQRIFPSVSLTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 564 (564)
Q Consensus 489 MerI~Pp~~~n~lvR~g~~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 564 (564)
||||+||+++|++||+|++...++||||||||+++++++++++|+++|||||||++++|||||||||||||||+|+
T Consensus 424 MerI~Pp~~~n~lvR~g~~~~~~~iSELGIfG~~l~~~~~i~~N~~~G~LlRTK~~~s~EGGVaaG~g~LDS~~L~ 499 (499)
T 3kal_A 424 MQRIFPATSPAILVRDGNWDTGHVISEAGIFGTYLRNKDKIIINNESGYMVRTKISSSYEGGVLPGFGVVDTVYLT 499 (499)
T ss_dssp EECCCCCCEEEEEEETTEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSCCCTTTTTCEEECEEEC
T ss_pred HhhcCCCCCCeEEEECCccccCCeeeeccceEEEEeCCCeEEEcCcceEEEecCCCCCCCCCeeeeeeeccceeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=100.00 E-value=4.3e-166 Score=1326.25 Aligned_cols=456 Identities=42% Similarity=0.679 Sum_probs=435.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcceeeee-cCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008481 97 QSVDQDLVQKMVYDALVWSSLHGLVVGD-RSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (564)
Q Consensus 97 ~~l~~~~~~~l~~~a~dwa~~hGl~~~~-~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D 175 (564)
|.++++++++|+++|+|||++|||+|+| +..+ .+..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 8 ~~l~~~~~~~l~~~a~dwa~~hGl~~~p~~~~~-----~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 82 (474)
T 2hgs_A 8 LLQDKQQLEELARQAVDRALAEGVLLRTSQEPT-----SSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 82 (474)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTT-----CCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCeEEeccCCCC-----CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999999995 4333 223689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccc-ccccCC--ccceEEeeceecccccchhhhHHH
Q 008481 176 GKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYM-LDEQTK--SLLQIEVNTISSSFSGLSCLVSEL 252 (564)
Q Consensus 176 ~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYM-ld~~~~--~lKQVE~NTISaSFggLs~~vs~l 252 (564)
++||+++|++++++|+||++||+||++|+++|++|+++||||||||| +|..++ +|||||||||||||||||+++++|
T Consensus 83 ~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~~~Lgl~RSDYM~l~~~~~~~~lKQVE~NTIs~SFggls~~v~~l 162 (474)
T 2hgs_A 83 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 162 (474)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcCCCCceeeeeeecccccccccCCCCceEEEEeechhhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 998766 799999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEech
Q 008481 253 HRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTL 332 (564)
Q Consensus 253 Hr~ll~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl 332 (564)
||||++.++.... ..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++ ||+++|+||
T Consensus 163 H~~l~~~~~~~~~--~~~~p~N~a~~~la~gla~A~~~Y~~~~~~vl~VVq~~E~N~~DQr~le~~L~~~-~I~~~R~t~ 239 (474)
T 2hgs_A 163 HRHVLSVLSKTKE--AGKILSNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLAR-NIHVIRRTF 239 (474)
T ss_dssp HHHHHHHTTCHHH--HTTSCCCCHHHHHHHHHHHHHHHHCCTTCEEEEECCSSCTTHHHHHHHHHHHHTT-TCCEEEECH
T ss_pred HHHHHHhhccccc--cccCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEecCCCcchHhHHHHHHHHHhC-CCcEEEeEH
Confidence 9999988765422 2568999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhcccHHHHHhhcChhhHh
Q 008481 333 AEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLE 412 (564)
Q Consensus 333 ~el~~~~~l~~~~~L~vdg~EVAVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pgvLe 412 (564)
+||.++++++++|+|+++|.||||||||+||+|+|| +|.+|++|++||+|+|||||||+|||||||||||+|++|++||
T Consensus 240 ~el~~~~~l~~~~~L~~~~~eVaVVYfRaGY~P~dY-se~~W~aRl~lE~S~AIKcPsi~~qLaGtKKvQQ~La~p~vLe 318 (474)
T 2hgs_A 240 EDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQY-SLQNWEARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLE 318 (474)
T ss_dssp HHHHHHEEECSSCCEEETTEEEEEEEESSCSSGGGC-CHHHHHHHHHHHHSSSEEESCHHHHHTTSHHHHHHTTSTTHHH
T ss_pred HHHhhhcccCCCCcEEEcCEEEEEEEecCCCChhhc-chHHHHHHHHHHhcCceeCCCHHHHHhhhHHHHHHhcChhHHh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhc-CCHHHHHHHHHhccccccCCch----HHHHHhhcCCCCccccCCCcCCCccccchhHHHHHHhccCCCCcc-ccce
Q 008481 413 RFL-DNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDE-DAAY 486 (564)
Q Consensus 413 rFl-~~~~~~~~lr~tFa~lysLD~~----~~v~~A~~~P~~yVLKPQREGGGNNiYgedI~~~L~~l~~~~~~e-~~aY 486 (564)
||+ .|++++++||+||++|||||++ +++++|+++|++||||||||||||||||+||+++|++|+++ | |++|
T Consensus 319 rfl~~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~---e~~~ay 395 (474)
T 2hgs_A 319 MLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDS---EERASY 395 (474)
T ss_dssp HHSTTCHHHHHHHHHTCCCEEECSSSHHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTS---GGGGGE
T ss_pred hhcCCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhCchheeecCcccCCccccchHHHHHHHHhcCCc---ccceee
Confidence 999 5889999999999999999974 68899999999999999999999999999999999999875 6 9999
Q ss_pred eeccccCCCCcceEEEecCc-cccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008481 487 ILMQRIFPSVSLTFLMRDGI-CHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 564 (564)
Q Consensus 487 ILMerI~Pp~~~n~lvR~g~-~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 564 (564)
||||||+||+++|++||+|+ +..+++||||||||++++++++++.|+++|||||||++++|||||||||||||||+|+
T Consensus 396 ILMerI~Pp~~~~~~vR~g~~~~~~~~iSELGIfg~~l~~~~~v~~N~~~G~LlRTK~~~s~EGGVaaG~g~lDS~~L~ 474 (474)
T 2hgs_A 396 ILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 474 (474)
T ss_dssp EEEECCCCCCEEEEEECTTSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred eeeecccCCCCCeEEEECCccccccceeeccceeEEEEECCCEEEEecceeEEEEecCCCCCCCCeeeeeecccceeeC
Confidence 99999999999999999999 7889999999999999999999999999999999999999999999999999999996
No 3
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural genomics, PSI, protein structure initiative; HET: ANP 3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4 d.142.1.6 PDB: 1m0t_A*
Probab=100.00 E-value=7.2e-166 Score=1329.13 Aligned_cols=459 Identities=36% Similarity=0.579 Sum_probs=434.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008481 96 LQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (564)
Q Consensus 96 ~~~l~~~~~~~l~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D 175 (564)
||. +++++++|+++|+|||++|||+|++ ..+.+ ++..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 4 ~pp-~~~~~~~l~~~a~dwa~~hGl~~~~-~~~~~---~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 78 (491)
T 1m0w_A 4 YPP-SKDQLNELIQEVNQWAITNGLSMYP-PKFEE---NPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQD 78 (491)
T ss_dssp --C-CHHHHHHHHHHHHHHHHHHTCEECC-TTGGG---CTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHCCcEEec-CCCCC---CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777 8899999999999999999999998 44321 224689999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHhcccCCC-hhhHHHHHHHHHHHh--ccCCCceeeeeeeccccccccCC--ccceEEeeceecccccch
Q 008481 176 ----GKFLQESLSRTKKVD-PFTSRLLDIHSKMLE--LNKKEDIRLGLHRSDYMLDEQTK--SLLQIEVNTISSSFSGLS 246 (564)
Q Consensus 176 ----~~FL~~~l~~~~~~D-~Ft~~L~~I~~~v~~--~g~~q~i~LGL~RSDYMld~~~~--~lKQVE~NTISaSFggLs 246 (564)
.+||.++|++++++| +||++||+||++|++ +|++|+++|||||||||+|..++ ++||||||||||||||||
T Consensus 79 ~~~~~~fL~~~l~~~~~~D~~Ft~~L~~I~~~v~~~~~g~~q~~~Lgl~RSDYMl~~~~~~~~~KQVE~NTIs~Sfggls 158 (491)
T 1m0w_A 79 MAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLS 158 (491)
T ss_dssp HTCTTSHHHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHH
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccccCceeeeeeehhhccCCCCCCCceeEEEeechhhhcchHH
Confidence 999999999999999 999999999999999 99999999999999999998765 799999999999999999
Q ss_pred hhhHHHHHHHHHhhc-----ccCCCCCCCCCCCchHHHHHHHHHHHHHHhCCC-------CcEEEEEEeCCCCccchhhH
Q 008481 247 CLVSELHRSLLIHYG-----ERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNA-------RALVLVVVQSEEHNMYDQHW 314 (564)
Q Consensus 247 ~~vs~lHr~ll~~~~-----~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~-------~avVLfVVq~~ErNi~DQr~ 314 (564)
++|++|||||++++. ..+.. ..+|+|++++++|+|||+||++|+++ +++||||||++|||+||||+
T Consensus 159 ~~v~~lH~~l~~~~~~~~~~~~~~~--~~~p~N~a~~~la~gla~A~~~y~~~~~~~~~~~~~vl~VVq~~E~N~~DQr~ 236 (491)
T 1m0w_A 159 EKVDRLHSYLNRANKYDPKGPIYND--QNMVISDSGYLLSKALAKAVESYKSQQSSSTTSDPIVAFIVQRNERNVFDQKV 236 (491)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCSSCG--GGBCCCCHHHHHHHHHHHHHHHHHHTCC-----CCEEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccc--ccCCCCchHHHHHHHHHHHHHHhcCccccccCCCcEEEEEecCCCcchhhHHH
Confidence 999999999998641 11221 36899999999999999999999876 78999999999999999999
Q ss_pred HHHHHHhhCCceEEEechhhHhhcceec-CCCceEEcC--eEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCch
Q 008481 315 LSSVLKERHNVTTIRKTLAEIDAEGELL-PDGTLLVGG--QVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSI 391 (564)
Q Consensus 315 lE~~L~~~~gI~viR~Tl~el~~~~~l~-~~~~L~vdg--~EVAVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI 391 (564)
|||+|+++|||+++|+||+||.+.++++ ++|+|+++| .||||||||+||+|+|||+|++|++|++||+|+|||||||
T Consensus 237 lE~~L~~~~~I~~~R~t~~el~~~~~l~~~~~~L~~~~~~~eVaVVYfRaGY~P~dY~se~~W~aRl~lE~S~AIKcPsi 316 (491)
T 1m0w_A 237 LELNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDL 316 (491)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHEEECTTTCCEEETTTCCEEEEEEEESCSSGGGCCSHHHHHHHHHHHHSSSEEETCH
T ss_pred HHHHHHHhcCCcEEEEEHHHHhhhCccCCCCCeEEEcCCceEEEEEEecCCCChhhCCchhHHHHHHHHHhcCceeCCCH
Confidence 9999999999999999999999999998 789999999 8999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHhhcChhhHhhhcCCHHHHHHHHHhccccccCCch----HHHHHhhcCCCCccccCCCcCCCccccchh
Q 008481 392 SYHLAGTKKIQQELAKPNVLERFLDNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGNNIYGED 467 (564)
Q Consensus 392 ~~qLaGtKKVQQ~La~pgvLerFl~~~~~~~~lr~tFa~lysLD~~----~~v~~A~~~P~~yVLKPQREGGGNNiYged 467 (564)
+|||||||||||+|++|++||||++|++++++||+||++|||||++ +++++|+++|++||||||||||||||||+|
T Consensus 317 ~~qLaGtKKvQQ~La~p~vLerfl~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGNNiYg~d 396 (491)
T 1m0w_A 317 LTQLSGSKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKEN 396 (491)
T ss_dssp HHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEECSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGG
T ss_pred HHHHhhhHHHHHHhCChhHHHhhcCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhChhheeecCcccCCcccccHHH
Confidence 9999999999999999999999999899999999999999999975 589999999999999999999999999999
Q ss_pred HHHHHHhccCCCCccccceeeccccCCCCc-ceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEeecCCCC
Q 008481 468 VKETLLRLKKDGTDEDAAYILMQRIFPSVS-LTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASS 546 (564)
Q Consensus 468 I~~~L~~l~~~~~~e~~aYILMerI~Pp~~-~n~lvR~g~~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s 546 (564)
|+++|++|+++ ||++|||||||+||++ +|++||+|++..+++||||||||++++++++++.|+++|||||||++++
T Consensus 397 I~~~L~~l~~~---e~~ayILMerI~Pp~~~~~~~vR~g~~~~~~~iSELGIfG~~l~~~~~v~~N~~~G~LlRTK~~~s 473 (491)
T 1m0w_A 397 IPNFLKGIEER---HWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTS 473 (491)
T ss_dssp HHHHHHTSCGG---GGGGEEEEECCCCCCBCSCCEEETTEEECCCBEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEE
T ss_pred HHHHHHhcCHh---hcceeeeeecccCCCCCCeEEEECCccccCCeeecccceEEEEECCCEEEEecceeEEEEecCCCC
Confidence 99999999876 9999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccccccccccC
Q 008481 547 NEGGVAAGFAVLDSLYLT 564 (564)
Q Consensus 547 ~EGGVaaG~g~LDS~~L~ 564 (564)
|||||||||||||||+|+
T Consensus 474 ~EGGVaaG~g~lDS~~L~ 491 (491)
T 1m0w_A 474 NEGGVAAGFGCLDSIILY 491 (491)
T ss_dssp ETTEEEECCEEECCEEEC
T ss_pred CCCCeeeeeecccceeeC
Confidence 999999999999999996
No 4
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=100.00 E-value=1.8e-160 Score=1296.62 Aligned_cols=457 Identities=33% Similarity=0.509 Sum_probs=409.8
Q ss_pred CHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCCHHHH
Q 008481 100 DQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLDGKFL 179 (564)
Q Consensus 100 ~~~~~~~l~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D~~FL 179 (564)
.+.++++|+++|+|||++|||+|++++. ..++|||||||||||||++|++|+++|++||+|||+||+|++||
T Consensus 14 ~~~~~~~l~~~a~dwa~~hGl~~~~~~~--------~~~~~aP~tL~PspfPr~~F~~a~~~q~~~NeL~~~vS~D~~fL 85 (562)
T 2wyo_A 14 LELGAERYAEQFAAKCHELGMVMKESAG--------PGRVPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFL 85 (562)
T ss_dssp HHTTCCSHHHHHHHHHHHHTCEEECSSS--------SCEEECCEESSCEEEEHHHHHHHHHTHHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcEEeecCC--------CceeecceEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455678999999999999999997653 25799999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCC-hhhHHHHHHHHHHHhcc-CCCceeeeeeecccccccc-----C---CccceEEeeceecccccchhhh
Q 008481 180 QESLSRTKKVD-PFTSRLLDIHSKMLELN-KKEDIRLGLHRSDYMLDEQ-----T---KSLLQIEVNTISSSFSGLSCLV 249 (564)
Q Consensus 180 ~~~l~~~~~~D-~Ft~~L~~I~~~v~~~g-~~q~i~LGL~RSDYMld~~-----~---~~lKQVE~NTISaSFggLs~~v 249 (564)
+++|++++++| +||++||+||++|+++| +.|+++|||||||||+|.+ + .+|||||||||||||||||++|
T Consensus 86 ~~~l~~~~~~D~~Ft~~L~~I~~~v~~~g~~~q~l~Lgl~RSDYM~~~~~~~~~~~~~~~~KQVE~NTIS~SFggls~~v 165 (562)
T 2wyo_A 86 RDALQETAASDVNFTGKLLNMLQEVYLSGGPFQQLMLGIFRTDYMREGVYDKMLSTTASRWKNVEINTISCSFAGLSPLI 165 (562)
T ss_dssp HHHTHHHHHHCTTTHHHHHHHHHHHHSSSSCCCCCEEEEEEEEEEEBSCCCC--CCSSCSEEEEEEECSSCCCTTTHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCccCceeeeeeehhhhcCccccccccccccceeEEEeechhhhcchhHHHH
Confidence 99999999999 99999999999999999 9999999999999999973 2 3799999999999999999999
Q ss_pred HHHHHHHHH---hh----cccCCCC-----------CCCCCCCchHHHHHHHHHHHHHH-------------hCC-----
Q 008481 250 SELHRSLLI---HY----GERLGLD-----------SKKVPGNSAVIQFAEAMAKAWTE-------------YNN----- 293 (564)
Q Consensus 250 s~lHr~ll~---~~----~~~~~~~-----------~~~lp~N~al~~la~gLa~A~~~-------------Y~~----- 293 (564)
++|||||++ .+ ++..... ..++|+|++++++|+|||+||++ |++
T Consensus 166 ~~lH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~N~a~~~la~gla~A~~~~~~~~~~~~~~~~Y~~~~~~~ 245 (562)
T 2wyo_A 166 TEFHQHIAAYLQVLQKARGKEDDDGVENMSWIWGKGNCRLERSVSGDVVPKAIADAVRAWVEQQKFASLRASWEQFQQNE 245 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----CCCCCCGGGCCSSSEECCCTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTC-----
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccccCCCCchHHHHHHHHHHHHHhhhccccccchhhccccccccc
Confidence 999999995 33 1111111 13579999999999999999999 987
Q ss_pred -------------CCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEechhhHhhcceec---CC-Cc-eEEcC-eEE
Q 008481 294 -------------ARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTLAEIDAEGELL---PD-GT-LLVGG-QVI 354 (564)
Q Consensus 294 -------------~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl~el~~~~~l~---~~-~~-L~vdg-~EV 354 (564)
+++|||||||++|||+||||+|||+|+++|||+++|+||+||...++++ ++ ++ |+++| .||
T Consensus 246 ~~~~~~~~~~~~~~~~vVL~VVQ~~ErN~~DQr~le~~L~~~hgI~~iR~Tl~el~~~~~l~~~~~~~~~~L~~~g~~eV 325 (562)
T 2wyo_A 246 VGSGEIHQLGVLDTAPVVLVVVQENERNTADQYALLMRVLEEHRIRFIFRTLQELHLSLKLHSISPEQPPLAVVDGHYPI 325 (562)
T ss_dssp ----------CCCSSCEEEEEECSSCSCHHHHHHHHHHHHHTTCCCEEEECHHHHHHHEEEECSSTTSCCEEEETTTEEE
T ss_pred cccccccccccCCCCcEEEEEecCCCcchHhHHHHHHHHHHhcCCcEEEeEHHHHhhhcccCccCCCCCceEEecCceEE
Confidence 7899999999999999999999999999999999999999999999998 77 89 99999 999
Q ss_pred EEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhcccHHHHHhhcChh-hHhhh--cCCHHHHHHHHHhcccc
Q 008481 355 AVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPN-VLERF--LDNKEDIAKVRKCFAGL 431 (564)
Q Consensus 355 AVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pg-vLerF--l~~~~~~~~lr~tFa~l 431 (564)
||||||+||+|+|||+|.+|++|++||+|+|||||||+|||||||||||+|++|+ +|||| ++|++++++||+||++|
T Consensus 326 aVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p~~vLerf~~l~~~~~~~~lr~tFa~l 405 (562)
T 2wyo_A 326 AVAYFRSTYVPEDFPTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVDRVLVPVAFCGDSDKAGLLQRHFVPQ 405 (562)
T ss_dssp EEEEEESCSSGGGCCSHHHHHHHHHHHHSSCEEETCHHHHHTTSHHHHHHTTCCCCCCCCCCSTTCHHHHHHHHTTCCCE
T ss_pred EEEEecCCCChhhCCchhhHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCchhhhhhhhcCCCHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999 99999 98899999999999999
Q ss_pred ccCCch----HH----HHHhhcCCCCccccCCCcCCCccccchhHHHHHHhccCCCC----ccccceeeccccCCCCcce
Q 008481 432 WSLDDS----EI----VSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGT----DEDAAYILMQRIFPSVSLT 499 (564)
Q Consensus 432 ysLD~~----~~----v~~A~~~P~~yVLKPQREGGGNNiYgedI~~~L~~l~~~~~----~e~~aYILMerI~Pp~~~n 499 (564)
||||++ ++ +++|+++|++||||||||||||||||+||+++|++|+++++ +||++|||||||+||+++|
T Consensus 406 y~Ld~~~~g~~~~~~~~~~A~~~p~~~VLKPQREGGGNNiyG~dI~~~L~~l~~~~~~~~~~e~~ayILMerI~Pp~~~~ 485 (562)
T 2wyo_A 406 YSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEGGGNLLSGETMVKALKATKEGDPVTYSKVRCEYVVMSRIQFHVSTG 485 (562)
T ss_dssp EECSCSSCTTTTHHHHHHSTTSCCCCCSSSCCSCCCSSHHHHHHCC------------CTTTTTSSCEEECCCCBCCEEE
T ss_pred cCCCcchhhhhhhHHHHHHHhhChhheeecCCccCCccccchHHHHHHHHhcCCccccccccccceeEEEecccCCCCCe
Confidence 999975 46 89999999999999999999999999999999999987532 5999999999999999999
Q ss_pred EEEecCc--cccccceeccceeEEEEecC---------cEEEeeccceEEEeecCCCCCCCceeeccccccccccC
Q 008481 500 FLMRDGI--CHKDHAISELGIYGAYLRIK---------EKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLYLT 564 (564)
Q Consensus 500 ~lvR~g~--~~~~~~VSELGIfG~~l~~~---------~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 564 (564)
++||+|+ +...++||||||||++|+++ +++++|+++|||||||++++|||||||||||||||+|+
T Consensus 486 ~~vR~g~~~~~~~~~iSELGIfG~~l~~~~~~~~~~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~L~ 561 (562)
T 2wyo_A 486 SLLARGDVVQLERNMCSEVGIFGVILSAAKGSSVGTNGSSVLFNTFAGYTVRSKPADADDGGVMAGVAALDSLAVV 561 (562)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEEEEECCTTCCSSGGGCSEEEEEEEEEEEEEEETTC--------CCCEECEEEE
T ss_pred EEEECCccccccCCeeeecceeEEEEECCCcccccCCCCceEeccceeEEEEecCCCCCCCCeeeeeecccceeec
Confidence 9999999 67899999999999999999 89999999999999999999999999999999999985
No 5
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=98.82 E-value=1.7e-08 Score=109.16 Aligned_cols=357 Identities=11% Similarity=0.163 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHH----HHHhhHHHHHHHHhh
Q 008481 98 SVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREA----CELAPIFNELVDRVS 173 (564)
Q Consensus 98 ~l~~~~~~~l~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A----~~lq~~~N~L~~rVS 173 (564)
.++++++....+.|...-..+|+.+.--+... + .-...||.+.|--++...|++. .+-..++|.+++.|=
T Consensus 33 ~~~~~~l~~r~~~~~~~~~~~Gitf~vy~~~~-~-----~~r~~p~d~iP~ii~~~eW~~le~Gl~QR~~~Ln~~l~DiY 106 (474)
T 3n6x_A 33 DVPHQQLESKRQEAELLFRRVGITFNVYGEDA-G-----AERLIPFDVVPRILSASEWARLSDGAIQRVKALNMFLHDVY 106 (474)
T ss_dssp HSSTTTTSSHHHHHHHHHHHHCCCC-----------------CCCBCSSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEeccCCC-C-----CCcccccCCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777888888899999875432211 0 1257999999999999999986 455678899999888
Q ss_pred CCHHHHHHHHhc-ccCCC-hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHH
Q 008481 174 LDGKFLQESLSR-TKKVD-PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSE 251 (564)
Q Consensus 174 ~D~~FL~~~l~~-~~~~D-~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~vs~ 251 (564)
.+.+.|.+-+-+ ++..+ .|.. .+..-.....+.+.|.|.|-..+. +|.|+-+|.||=+-|..+.+-.--.
T Consensus 107 g~q~il~~G~iP~lv~~~p~y~~-------~~~g~~p~~~~~~~i~~~Dl~r~~-dG~~~vlEdn~~~PSG~~y~lenR~ 178 (474)
T 3n6x_A 107 HDQEIIKAGIVPSSILANAQYRP-------EMFGVDVPGGVYAHIAGVDLVRTG-ENDFYVLEDNLRTPSGVSYMLENRK 178 (474)
T ss_dssp TTCHHHHTTSSCGGGGGCTTCCG-------GGTTCCCGGGCSCSEEEEEEEECS-SSCEEEEEEECSSCCCHHHHHHHHH
T ss_pred CChhHHhcCCCHHHHccCccccH-------HHCCCCCCCCeEEEEEEEEEEECC-CCCEEEEEeCCCCCchHHHHHHHHH
Confidence 888777662221 11111 2221 112222345677999999988875 5689999999998886554321111
Q ss_pred HHHHHHHh-hcccCCCCCCCCCCCc-hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhh-CCceEE
Q 008481 252 LHRSLLIH-YGERLGLDSKKVPGNS-AVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKER-HNVTTI 328 (564)
Q Consensus 252 lHr~ll~~-~~~~~~~~~~~lp~N~-al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~-~gI~vi 328 (564)
+...+... +... ++..+. -...|.++|.+++.. +..+|.|+++ .|+..|-. +.|.+...+ .|+..+
T Consensus 179 ~~~r~~pelf~~~------~v~~~~~~~~~l~~~L~~~a~~-~~~~P~VvvL-tpG~~ne~---yfEhafLA~~lG~~Lv 247 (474)
T 3n6x_A 179 MMMRLFPELFRRY------PVAPVEHYPQVLLNNLRAVAQA-GVHEPTVVLL-TPGAYNSA---YFEHAFIAQQMGIELV 247 (474)
T ss_dssp HHHHHCHHHHHHS------CBCCCTTHHHHHHHHHHHTSCT-TCSSCCEEEE-CCCSSSTT---HHHHHHHHHHHTCEEE
T ss_pred HHHHHhHHHHHhc------CCCCchhHHHHHHHHHHHhccc-CCCCCEEEEE-CCCCchhH---HHHHHHHHhcCCcEEe
Confidence 22222211 2111 122222 235666666655331 2245665444 48888854 555554433 376654
Q ss_pred EechhhHhhcceecCCCceEEc----CeEEEEEEeecCCCCCCCCChhhH---------HHHHhhhhcccccCCchhhhh
Q 008481 329 RKTLAEIDAEGELLPDGTLLVG----GQVIAVVYFRAGYAPTDYPSESEW---------RARLLMEQSSAVKCPSISYHL 395 (564)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vd----g~EVAVVYfRaGY~P~dYpse~eW---------~aRl~LE~S~AIKCPsI~~qL 395 (564)
.-.|| .+ .|++|++. .+.|.|||=|- .++|-+..+- -.......-...-...+..++
T Consensus 248 --eg~DL----~v-~dg~v~~rt~~G~~~VDVIyRRv---dd~~lDpl~~~~dS~lGv~gLl~A~r~G~V~i~Na~gsgv 317 (474)
T 3n6x_A 248 --EGQDL----FV-RNNAVYMRTTEGPKRVDVIYRRI---DDDFIDPLSFRPDSMLGVPGLLSVYRNGGVTLANAVGTGV 317 (474)
T ss_dssp --CGGGE----EE-CSSCEEECCTTCCEEECEEEECS---CGGGSCTTTSCTTCSSSCTTHHHHHHTTSCEEESCTTTHH
T ss_pred --chhhe----EE-ECCEEEEecCCCCeEEEEEEEcC---CHHhcCccccCCCcccccHHHHHHHHcCCEEEeCCCchhh
Confidence 22222 23 46888873 48999999998 5666553221 122233344445567788899
Q ss_pred cccHHHHHhhcChhhHhhhcCCHHHHHHHHHhccccccCCchHHHHHhhcCCCCccccCCCcCCCcc-ccc-----hhHH
Q 008481 396 AGTKKIQQELAKPNVLERFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNN-IYG-----EDVK 469 (564)
Q Consensus 396 aGtKKVQQ~La~pgvLerFl~~~~~~~~lr~tFa~lysLD~~~~v~~A~~~P~~yVLKPQREGGGNN-iYg-----edI~ 469 (564)
+-.|-++-.|. ...+.|+. ++ .|.. .++-|-..+.+..+.+++|-+++|+||--+.||.- +.| +++.
T Consensus 318 ~~dKal~a~Lp--~l~~~~lg-Ee---~il~-~VpT~~c~~~~~~~~vl~~l~~lViKp~~g~gg~gv~iG~~~s~~e~~ 390 (474)
T 3n6x_A 318 ADDKDTYIYVP--EMIRFYLG-EE---PILS-NVPTYQLSKADDLKYVLDNLAELVVKEVQGSGGYGMLVGPAASKQELE 390 (474)
T ss_dssp HHSTTTGGGHH--HHHHHHHC-SC---CSSE-ECCCEETTSHHHHHHHHHSGGGEEEEECCCE-----EEGGGCCHHHHH
T ss_pred hcCcHHHHHhH--HHHHHhCC-Hh---hhcc-CCCceecCCHHHHHHHHhchhheEEEecCCCCCCceEECCcCCHHHHH
Confidence 99999999884 44454444 22 2333 34556566667788889999999999988766543 343 4455
Q ss_pred HHHHhccCCCCccccceeeccccCCCCcceE
Q 008481 470 ETLLRLKKDGTDEDAAYILMQRIFPSVSLTF 500 (564)
Q Consensus 470 ~~L~~l~~~~~~e~~aYILMerI~Pp~~~n~ 500 (564)
++++++.. +-..||.-+.|.+.+.+.+
T Consensus 391 ~~~~~i~~----~p~~yIaQe~v~ls~~P~~ 417 (474)
T 3n6x_A 391 DFRQRILA----NPANYIAQPTLALSTCPTL 417 (474)
T ss_dssp HHHHHHHH----SGGGEEEEECCCCCEEEEE
T ss_pred HHHHHHHh----CCCCEEEeeccCCccccee
Confidence 56666654 3457999999999877776
No 6
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=97.76 E-value=5e-05 Score=85.12 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=103.3
Q ss_pred CCCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeeccccc
Q 008481 148 VSFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYML 223 (564)
Q Consensus 148 spfPr~~F~~A----~~lq~~~N~L~~rVS~D~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMl 223 (564)
..|+++.+++. .++-.++.+++++|-.|.+|+.. |. -.+ .+|+.-+..-+ ...+. -+-|-|+.+
T Consensus 266 y~~t~~e~e~L~~at~eL~~m~l~a~~~vl~~~~l~~~-lg----IP~---~l~~lI~~sw~--~~~p~--lygRfDf~~ 333 (652)
T 2vob_A 266 YESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRL-FA----IPE---EFWPRIRHSWK--YQQTY--ISGRFDFAF 333 (652)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH-TT----CCG---GGHHHHHHHHH--HEECC--CEEEEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-cC----cCH---HHHHHHHhccc--cCCCc--eEEEEEEEE
Confidence 34566666654 45556666777777888776522 21 222 23333222211 12222 355999999
Q ss_pred cccCCccceEEeeceecccccchhhhHHHHHHHHHh-hcccCCCCCCCCCCCchHHHHHHH-HHHHHHHhCCCCcEEEEE
Q 008481 224 DEQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIH-YGERLGLDSKKVPGNSAVIQFAEA-MAKAWTEYNNARALVLVV 301 (564)
Q Consensus 224 d~~~~~lKQVE~NTISaSFggLs~~vs~lHr~ll~~-~~~~~~~~~~~lp~N~al~~la~g-La~A~~~Y~~~~avVLfV 301 (564)
|..++.+|.+|+|.=+.++. +- .+.+....++. ++. ...++.-..+-+. |.++|+.+... +.|-|+
T Consensus 334 dg~~g~~KllE~NADTPt~l-~E--aa~iq~~w~e~~~~~--------~~~~dq~n~l~e~~L~~~~~~~~~~-~~v~~~ 401 (652)
T 2vob_A 334 NNETGEVKCFEYNADSASTL-LE--CGLIQQKWAESVGLD--------KQDTRGSGFAVERNLKMAWANSGAT-GRVHFC 401 (652)
T ss_dssp CTTTCCEEEEEEETTCCTTH-HH--HHTHHHHHHHHTTCC--------CTTEEETTTTHHHHHHHHHHHSCCC-SEEEEE
T ss_pred cCCCCceEEEEEcCCCchHH-HH--HHHHHHHHHHHhcCC--------CCccchhhHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 97656799999999888774 22 22333344443 320 1123334556666 88999998765 555555
Q ss_pred EeCC-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008481 302 VQSE-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (564)
Q Consensus 302 Vq~~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVAVVYf 359 (564)
..+. |.. +--++|...+ +..|+.+.-.. +.||. .+.+|+|+ .+|++|.+||=
T Consensus 402 ~~~~~ED~-~t~~yL~~~a-~eaG~~t~~~~~i~dL~----~~~~G~l~D~~g~~Id~lfK 456 (652)
T 2vob_A 402 VDEEREEQ-YTALYCMQAA-EAVGLEGKLCILFDEFR----FDDNGHVVDSDGVRVRNVWK 456 (652)
T ss_dssp ECSCHHHH-HHHHHHHHHH-HHTTCEEEEEETTTTCE----ECTTSCEECTTSCBCCEEEE
T ss_pred eCCchHHH-HHHHHHHHHH-HHCCCcEEEecchhheE----ECCCCcEECCCCcEeeEEEe
Confidence 3332 211 1113333333 45699999886 77663 34567766 46789999863
No 7
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.39 E-value=0.00026 Score=78.93 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=104.8
Q ss_pred CCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccccc
Q 008481 149 SFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLD 224 (564)
Q Consensus 149 pfPr~~F~~A----~~lq~~~N~L~~rVS~D~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld 224 (564)
.|+++.+++. .+|-.++.+++++|-.|.+|+. .+ ...+ .+|+.-++.-+. ..+- .-+-|-|+.+|
T Consensus 254 ~~s~~e~e~l~~at~eL~~m~~~a~~~v~~~~~l~~----~l-giP~---~~~~lI~~sw~~--~~~~-~l~gRfDf~~d 322 (619)
T 2io8_A 254 TITESAEQELIKATNELHLMYLHATDKVLKDDNLLA----LF-DIPK---ILWPRLRLSWQR--RRHH-MITGRMDFCMD 322 (619)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHG----GG-CCCG---GGHHHHHHHHHH--STTC-CCEEEEEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----Hc-CCCH---HHHHHHHhcccc--CCCC-CeEEEEEEEEe
Confidence 4556666554 4555666677777777776652 22 2222 344333332111 2221 22559999999
Q ss_pred ccCCccceEEeeceecccccchhhhHHHHHHHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeC
Q 008481 225 EQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQS 304 (564)
Q Consensus 225 ~~~~~lKQVE~NTISaSFggLs~~vs~lHr~ll~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~ 304 (564)
.. + +|.+|+|.=+.++. +-+ +.+....++.++. ++.++..+.+.+.|.++|+....+ ++|-|+..+
T Consensus 323 g~-g-~KllE~NaDTPt~l-~Ea--a~iq~~wle~~~~--------~~~~dq~n~l~e~L~~~~~~~~~~-~~v~~a~~~ 388 (619)
T 2io8_A 323 ER-G-LKVYEYNADSASCH-TEA--GLILERWAEQGYK--------GNGFNPAEGLINELAGAWKHSRAR-PFVHIMQDK 388 (619)
T ss_dssp TT-E-EEEEEEECSSCCCH-HHH--HTHHHHHHHHHCC--------SSCBCTTTTHHHHHHHHHHTSCCC-SEEEEEECS
T ss_pred CC-e-eEEEEEeCCchHHH-HHH--HHHHHHHHHhcCC--------CCCchhhhHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence 55 4 99999999888773 222 2334444444331 334555567788899999988765 555444333
Q ss_pred C-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008481 305 E-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (564)
Q Consensus 305 ~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVAVVYf 359 (564)
. |.. +--++|...+ ++.|+.+.-.. +.||. ++.+|+|+ .+|..|..||=
T Consensus 389 ~~Ed~-~t~~~L~~~a-~eaG~~~~~~~~i~dl~----~~~~G~l~d~dg~~I~~lfk 440 (619)
T 2io8_A 389 DIEEN-YHAQFMEQAL-HQAGFETRILRGLDELG----WDAAGQLIDGEGRLVNCVWK 440 (619)
T ss_dssp CHHHH-HHHHHHHHHH-HHTTCEEEEEESSTTCE----ECSSSCEECTTSCBCCEEEE
T ss_pred Cccch-HHHHHHHHHH-HHCCCceEEecchHhEE----ECCCCcEECCCCCEeeeEEe
Confidence 2 211 1223443333 45699988886 77664 34557665 47889988863
No 8
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=67.77 E-value=26 Score=33.50 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=28.5
Q ss_pred CccccCCCcCCCcccc-----chhHHHHHHhccCCCCccccceeeccccC
Q 008481 449 LYVMKPQREGGGNNIY-----GEDVKETLLRLKKDGTDEDAAYILMQRIF 493 (564)
Q Consensus 449 ~yVLKPQREGGGNNiY-----gedI~~~L~~l~~~~~~e~~aYILMerI~ 493 (564)
-+|+||-+.|||..++ .+++...++.+... ....||+.+.|.
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~---~~~~~lvqe~i~ 202 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEH---GTRYCMAQNYLP 202 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTT---TTSCEEEEECCG
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhc---CCceEEEecccC
Confidence 5999999999998764 23566666665432 224577777775
No 9
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=35.09 E-value=39 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.6
Q ss_pred HHHHHhhcChhhHhhhcCCHHH---HHHHHHhcccc
Q 008481 399 KKIQQELAKPNVLERFLDNKED---IAKVRKCFAGL 431 (564)
Q Consensus 399 KKVQQ~La~pgvLerFl~~~~~---~~~lr~tFa~l 431 (564)
.++|++-++|..+.+++.|++. +.+|...|.|+
T Consensus 25 ~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~ 60 (62)
T 2lnm_A 25 AALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM 60 (62)
T ss_dssp HHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence 4678888899999999999865 56666777664
No 10
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=28.28 E-value=64 Score=31.30 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHHHHHHHHH
Q 008481 194 SRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLI 258 (564)
Q Consensus 194 ~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~vs~lHr~ll~ 258 (564)
.++.++..++.+. +-+++.|-|++++..++.+.-+|+|+.. +|.+++.- ..+=.+|.+
T Consensus 259 ~~i~~~a~~~~~~-----lg~~~~~vD~~~~~~~g~~~vlEvN~~P-g~~~~~~~-~~i~~~l~~ 316 (324)
T 1z2n_X 259 AEMRDLAYKVRCA-----LGVQLCGIDFIKENEQGNPLVVDVNVFP-SYGGKVDF-DWFVEKVAL 316 (324)
T ss_dssp HHHHHHHHHHHHH-----HTCSEEEEEEECGGGCSSCEEEEEEESC-CTTSCBCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hCCcEEeeEEEEEcCCCCEEEEEEcCCC-CcCCCCCH-HHHHHHHHH
Confidence 4666666665432 3345789999998666778999999974 77777643 244444443
No 11
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=26.58 E-value=39 Score=33.44 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHhccCCCceee-eeeeccccccccCCccceEEeeceecccccc
Q 008481 191 PFTSRLLDIHSKMLELNKKEDIRL-GLHRSDYMLDEQTKSLLQIEVNTISSSFSGL 245 (564)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~L-GL~RSDYMld~~~~~lKQVE~NTISaSFggL 245 (564)
+...++.++..++.+. +.+ |+.|-|++++ ++.+.-+|+||. -+|...
T Consensus 248 ~~~~~i~~~a~~~~~a-----lg~~G~~~vD~~~~--~g~~~vlEiN~r-pg~t~~ 295 (322)
T 2fb9_A 248 GTQETVQELALKAYKV-----LGVRGMARVDFFLA--EGELYLNELNTI-PGFTPT 295 (322)
T ss_dssp THHHHHHHHHHHHHHH-----HTCCSEEEEEEEEE--TTEEEEEEEESS-CCCSSS
T ss_pred HHHHHHHHHHHHHHHH-----hCCceEEEEEEEEE--CCcEEEEEEECC-CCCCcc
Confidence 4445565555555422 222 9999999998 577899999995 445444
No 12
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=23.60 E-value=28 Score=26.36 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=16.0
Q ss_pred HHHHHHhcccCCC-hhhHHHHHHHHHH
Q 008481 178 FLQESLSRTKKVD-PFTSRLLDIHSKM 203 (564)
Q Consensus 178 FL~~~l~~~~~~D-~Ft~~L~~I~~~v 203 (564)
=|+++|.-+.+.| +|..+|.+.|-..
T Consensus 13 Ql~qal~hLiknD~~Fl~~iHeAYl~s 39 (46)
T 2wx4_A 13 QFVQAFTYLIQNDKEFANKLHKAYLNG 39 (46)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3455555555656 7888877777544
No 13
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=22.02 E-value=39 Score=34.02 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeecee
Q 008481 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTIS 239 (564)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS 239 (564)
+-..++-++-.++.+. =..+ |+.|-|+++|. ++.+.-+|+||+.
T Consensus 274 ~~~~~i~~~A~~~~~a---Lg~~-G~~~VDf~~~~-dg~~~vlEvNt~P 317 (357)
T 4fu0_A 274 EAEKRIQEAAVTIYKA---LGCS-GFSRVDMFYTP-SGEIVFNEVNTIP 317 (357)
T ss_dssp HHHHHHHHHHHHHHHH---TTCC-EEEEEEEEECT-TCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHH---hCCc-ceEEEEEEEeC-CCCEEEEEEeCCC
Confidence 4445555555555322 0122 89999999985 5678899999985
No 14
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.00 E-value=58 Score=32.32 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceeccccc
Q 008481 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSG 244 (564)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFgg 244 (564)
+...++.++..++.+.= .+ -|+.|-|+++|. ++.+.-+|+||. .+|..
T Consensus 267 ~~~~~i~~~a~~~~~al---g~-~G~~~vD~~~~~-~g~~~viEiN~r-pg~t~ 314 (343)
T 1e4e_A 267 EERGRIQETVKKIYKTL---GC-RGLARVDMFLQD-NGRIVLNEVNTL-PGFTS 314 (343)
T ss_dssp HHHHHHHHHHHHHHHHT---TC-EEEEEEEEEECT-TCCEEEEEEESS-CCCST
T ss_pred HHHHHHHHHHHHHHHHc---CC-ceEEEEEEEEeC-CCCEEEEEeeCC-CCCCc
Confidence 34455666666654321 12 299999999975 466899999996 34433
No 15
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=21.11 E-value=1.6e+02 Score=22.51 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHhhHHHHHHHHhhC------CHHHHHHHHhcccCCChhhHHHHHHHHHHH
Q 008481 160 ELAPIFNELVDRVSL------DGKFLQESLSRTKKVDPFTSRLLDIHSKML 204 (564)
Q Consensus 160 ~lq~~~N~L~~rVS~------D~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~ 204 (564)
.+++++..|-+..+. |..||++.|.+ +=...|++||.++.
T Consensus 8 ~v~~vL~sL~~i~~l~~~~~~d~~fL~~ll~~-----~~L~~Llkvhdki~ 53 (56)
T 1rso_B 8 AVSQVLDSLEEIHALTDSSEKDLDFLHSVFQD-----QHLHTLLDLYDKIN 53 (56)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCHHHHHHHHcC-----HHHHHHHHHHHHHH
Confidence 567777777766664 55799999985 44567999999985
No 16
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=20.75 E-value=1e+02 Score=31.37 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCccccCCCcCCCcccc----chhHHHHHHhccCCCCccc-cceeeccccCCCCcceEEEecCc
Q 008481 448 ELYVMKPQREGGGNNIY----GEDVKETLLRLKKDGTDED-AAYILMQRIFPSVSLTFLMRDGI 506 (564)
Q Consensus 448 ~~yVLKPQREGGGNNiY----gedI~~~L~~l~~~~~~e~-~aYILMerI~Pp~~~n~lvR~g~ 506 (564)
--+|+||-+.|||..++ .+++.+.++.+... .. ..+|+.+.|.-+...-..+++|+
T Consensus 137 ~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~~~lvEe~i~g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 137 VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNR---AEGGEVVVEEYLEGEEATVLALTDGE 197 (417)
T ss_dssp SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTS---SSCCCEEEEECCCSCEEEEEEEESSS
T ss_pred CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhh---ccCCeEEEEECccCcEEEEEEEEeCC
Confidence 46899999999987765 35677777766421 11 45677776654444444455654
No 17
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=20.56 E-value=2.2e+02 Score=24.31 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhc
Q 008481 152 ESHFREACELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLEL 206 (564)
Q Consensus 152 r~~F~~A~~lq~~~N~L~~rVS~D~~FL~~~l~~~~~~D~Ft~~L~~I~~~v~~~ 206 (564)
..+|++|...||-+-+|+..+ .|.+.|.+.|+- .|+ ..+.+.-|+.+...
T Consensus 46 ~eL~~~c~~~qp~i~~li~~~-~dee~l~~lL~~---ND~-L~~vl~ry~~~~~~ 95 (103)
T 1wrd_A 46 QELNRTCRAMQQRVLELIPQI-ANEQLTEELLIV---NDN-LNNVFLRHERFERF 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH---HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHh---hHH-HHHHHHHHHHHhcC
Confidence 489999999999999999976 788898888874 345 34566778777543
No 18
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=20.52 E-value=55 Score=32.64 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeece
Q 008481 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTI 238 (564)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTI 238 (564)
+...++.++-.++.+. =.++ |+.|-|++++.+ +.+.-+|+||.
T Consensus 267 ~~~~~i~~~a~~~~~~---lg~~-G~~~vD~~~~~~-g~~~vlEiN~r 309 (346)
T 3se7_A 267 TSRSLVQDTAKAVYRA---LGCR-GLSRVDLFLTED-GKVVLNEVNTF 309 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HTCC-EEEEEEEEECTT-SCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHH---hCCc-eEEEEEEEEeCC-CCEEEEEEeCC
Confidence 4445566555555422 1223 999999999864 67899999997
Done!