Query 008482
Match_columns 564
No_of_seqs 141 out of 795
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 2.8E-23 9.5E-28 220.1 21.7 400 9-543 23-434 (451)
2 3o7q_A L-fucose-proton symport 99.9 3.9E-22 1.3E-26 210.8 23.1 386 10-535 22-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.8 3.9E-17 1.3E-21 175.6 22.6 404 33-548 34-477 (491)
4 2gfp_A EMRD, multidrug resista 99.7 8.2E-18 2.8E-22 174.5 10.1 332 29-508 16-354 (375)
5 2cfq_A Lactose permease; trans 99.7 1.5E-17 5E-22 176.7 6.7 198 342-564 212-415 (417)
6 2xut_A Proton/peptide symporte 99.5 2.8E-13 9.7E-18 146.8 17.3 137 13-175 15-163 (524)
7 4gc0_A D-xylose-proton symport 99.4 3.1E-13 1.1E-17 144.9 10.5 128 30-175 26-177 (491)
8 4aps_A DI-OR tripeptide H+ sym 99.0 5.1E-09 1.7E-13 112.1 15.9 175 350-543 13-197 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.9 4.7E-09 1.6E-13 110.5 13.5 176 348-542 26-206 (451)
10 3o7q_A L-fucose-proton symport 98.7 9.5E-08 3.3E-12 100.1 13.4 125 373-504 49-177 (438)
11 2xut_A Proton/peptide symporte 98.7 7.1E-08 2.4E-12 104.2 12.0 173 349-540 11-196 (524)
12 2gfp_A EMRD, multidrug resista 98.7 1.1E-08 3.9E-13 105.4 5.4 165 354-537 4-169 (375)
13 2cfq_A Lactose permease; trans 98.1 1.2E-06 4.1E-11 92.4 4.5 169 346-534 3-179 (417)
14 4gc0_A D-xylose-proton symport 98.0 1.8E-05 6.1E-10 84.3 9.4 101 387-493 57-176 (491)
15 2knc_B Integrin beta-3; transm 28.7 1.2E+02 0.004 24.0 5.9 11 526-536 16-26 (79)
16 3ggh_A K88 fimbrial protein AD 21.9 24 0.00081 34.7 0.7 7 79-85 7-13 (275)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=2.8e-23 Score=220.08 Aligned_cols=400 Identities=16% Similarity=0.106 Sum_probs=265.2
Q ss_pred hchhHHHHHHHHHHHHhcC-cccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccch
Q 008482 9 LNTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (564)
Q Consensus 9 ~~~Rw~~l~a~~~i~l~~G-~~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~ 86 (564)
.+.||..+....+..+..+ ..+.++.+-|.+.+++ +|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g----------- 90 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN----------- 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC-----------
Confidence 3456766666666665555 3477888899999999 9999999888888888765 678888888865
Q ss_pred hhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeee
Q 008482 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (564)
Q Consensus 87 ~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~ 165 (564)
+|.++.+|.++..+|.++....... . .+++.+....++.|.|.+..+.+......+++| ++||.+.|+.
T Consensus 91 -------~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 160 (451)
T 1pw4_A 91 -------PRVFLPAGLILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 160 (451)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHH
Confidence 9999999999999999986552111 1 245566777888999999999999999999998 6799999999
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeecc-CCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 008482 166 KGFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICN-TNEGNEKKHLNSFSLIALIVAAYLMVIIIL 244 (564)
Q Consensus 166 ~a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 244 (564)
..+.+++..+.. .+...+ ++..+ .+ ..+ ....+. .++..
T Consensus 161 ~~~~~~g~~~g~----------------------~~~~~l----~~~~g~w~-----~~f---~~~~~~---~~~~~--- 200 (451)
T 1pw4_A 161 NCAHNVGGGIPP----------------------LLFLLG----MAWFNDWH-----AAL---YMPAFC---AILVA--- 200 (451)
T ss_dssp HHHHHHHHTSHH----------------------HHHHHH----HHHTCCST-----TCT---HHHHHH---HHHHH---
T ss_pred HHHHHHHHHHHH----------------------HHHHHH----HHHhccHH-----HHH---HHHHHH---HHHHH---
Confidence 888888876643 222111 11111 11 111 111000 00000
Q ss_pred hhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCC
Q 008482 245 EHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 324 (564)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (564)
++.... .+.++++ .+.. + +++ ..++ ++++. ..+.
T Consensus 201 -----------------~~~~~~------~~~~~~~-~~~~---~-~~~-~~~~-------------~~~~~---~~~~- 234 (451)
T 1pw4_A 201 -----------------LFAFAM------MRDTPQS-CGLP---P-IEE-YKND-------------YPDDY---NEKA- 234 (451)
T ss_dssp -----------------HHHHHH------CCCSSTT-TCCC---S-CTT-TCCC--------------------------
T ss_pred -----------------HHHHhh------ccCCHhh-cCCC---C-hhh-hccc-------------ccccc---hhhh-
Confidence 000000 1111110 0000 0 000 0000 00000 0000
Q ss_pred CCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhh
Q 008482 325 VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRF 403 (564)
Q Consensus 325 ~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl 403 (564)
.+.....+...++.++++.+|.+.+..++......++......+.++ .|.++.+++...++.++.+.+|++
T Consensus 235 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (451)
T 1pw4_A 235 --------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 306 (451)
T ss_dssp ------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000112235788999999999998888877776777778888877 789988888999999999999999
Q ss_pred hhhhhhhhh--hhcccCchhHHHHHHHHHHH-HHHHHHHhc---CcchHHHHHHHHHhhhccccchhHHHHHHhhccCch
Q 008482 404 GAGYVSDYF--LHVKEWARPLFMVITLAAMS-IGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 477 (564)
Q Consensus 404 ~~G~lsD~l--~~~~~~~R~~~l~~~~~l~~-i~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~f 477 (564)
+.|+++||+ ++ |.. +.....+.. ++++++... ....+.+...+.|++++........++.|.+..++.
T Consensus 307 ~~g~l~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 307 LCGWMSDKVFRGN-----RGA-TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHTSTTC-----HHH-HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHhcCC-----chh-HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhh
Confidence 999999998 53 222 333333333 454444322 222355667788999999888888999999999999
Q ss_pred hhhhhhHhhhhhh-HHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 478 GTIFNTITIANPV-GSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 478 g~nyg~~~~a~~i-G~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
|+.+|+......+ |.. +++.+.|.++|..+ |+.+|++.+++++++.++.+++.
T Consensus 381 g~~~~~~~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSV-AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877777 774 56778999999865 79999999998888886665544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=3.9e-22 Score=210.76 Aligned_cols=386 Identities=12% Similarity=0.068 Sum_probs=257.7
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchh
Q 008482 10 NTRWVSTVASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (564)
Q Consensus 10 ~~Rw~~l~a~~~i~l~~G~~-Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~ 87 (564)
+++|..++......+..|.. +.++.+.|.+++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------ 89 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------------ 89 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------------
Confidence 44555555555555555543 6888889999999999999999888888888765 678888888865
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeeh
Q 008482 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (564)
Q Consensus 88 ~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~ 166 (564)
+|.++.+|.++..+|.++.+.. ... ++++.++..-++.|.|.+..+.+......+++| ++||.+.|+..
T Consensus 90 ------~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 159 (438)
T 3o7q_A 90 ------YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQ 159 (438)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHH
Confidence 9999999999999999987553 222 367888888899999999999999999999998 67999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCC-------C-cccccch-----hHHHHHHH
Q 008482 167 GFVGLSGAILIQVYQTFFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNE-------G-NEKKHLN-----SFSLIALI 233 (564)
Q Consensus 167 a~~GLsa~i~s~i~~~~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~-------~-~~~~~~~-----~~~~~~i~ 233 (564)
++.+++..+-..+...... ...+... + +..+.+. .+......
T Consensus 160 ~~~~~g~~~g~~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLIL-------------------------SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHH-------------------------TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------------------------cccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 9999998776433322110 0000000 0 0000000 01100000
Q ss_pred HHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCC
Q 008482 234 VAAYLMVIIILEHIFALPFLVRVLTLILLLLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDP 313 (564)
Q Consensus 234 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (564)
.++... ++...... .+.+ +. +++ ++ +
T Consensus 215 ~~~~~~-------------------------~~~~~~~~-~~~p-~~-~~~-------------~~-------------~ 240 (438)
T 3o7q_A 215 IVAIVL-------------------------LVALLIML-TKFP-AL-QSD-------------NH-------------S 240 (438)
T ss_dssp HHHHHH-------------------------HHHHHHHH-CCCC-CC-TTT-------------CC-------------C
T ss_pred HHHHHH-------------------------HHHHHHHH-HcCC-cc-ccc-------------cc-------------c
Confidence 000000 00000000 0100 00 000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHH-Hhhc-CCCccchhHHH
Q 008482 314 VGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI-GGSL-GYSSFETSSLI 391 (564)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~-g~~~~~aa~~V 391 (564)
++ + +.....++++.++++.+|...+..++..+....+.+.+..+ .++. |.++.+++...
T Consensus 241 ~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 301 (438)
T 3o7q_A 241 DA------K-------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301 (438)
T ss_dssp CS------S-------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred cc------c-------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 00 0 00012356889999999999999999888887888888888 7776 99988889999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhhccccchhHHHHHHh
Q 008482 392 SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEI 471 (564)
Q Consensus 392 sl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~ 471 (564)
++..+.+.+|+++.|+++||+++ ...+....++.+++.+++.........+..++.|++++..+....+++.|.
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAP------HKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999954 344555555556655554433322344556888999999999999999999
Q ss_pred hccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHH
Q 008482 472 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 535 (564)
Q Consensus 472 FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a 535 (564)
++.+ -++.-++... ..+|.. +++.+.|.++|..++ |+.+|.+..++.++.
T Consensus 376 ~~~~-~~~~~~~~~~-~~~g~~-~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 376 LGQD-TKYGSSFIVM-TIIGGG-IVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp CGGG-HHHHHHHHHH-TTHHHH-HHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred cccc-ccchhhHHHH-HHHHHH-HHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9855 5555565553 346664 567789999999876 688888765444443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.76 E-value=3.9e-17 Score=175.63 Aligned_cols=404 Identities=12% Similarity=0.015 Sum_probs=222.7
Q ss_pred ccccHHHHhh-----cCCCcchhhHHHHhhhhhccc-cccchhhhcc-ccCCCCCCCccchhhhcccCcHHHHHHHHHHH
Q 008482 33 SIYSPALKTT-----QHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (564)
Q Consensus 33 S~ys~~L~~~-----lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~-~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~ 105 (564)
+...+.++++ +|+|.+|...+.....++..+ .++.|.+.|| +| +|.++.+|.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------------------~r~~~~~~~~~~ 95 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------------------ARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------chHHHHHHHHHH
Confidence 3444556666 999999999888888888765 5678888887 65 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CC--CcceeeeehhhhhhhHHHHHHHHHh
Q 008482 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TY--SGTAVGIMKGFVGLSGAILIQVYQT 182 (564)
Q Consensus 106 ~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~--RG~a~Gl~~a~~GLsa~i~s~i~~~ 182 (564)
.+|..++. .. .+++.+...-++.|.|.+..+.+......++|| ++ ||.+.++......+++.+-.
T Consensus 96 ~~~~~~~~-----~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~----- 163 (491)
T 4aps_A 96 MLGHIVLA-----LP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP----- 163 (491)
T ss_dssp HHHHHHHH-----SC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHH-----Hh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH-----
Confidence 99998743 22 345667777888999999999999999999997 46 56666666666667665543
Q ss_pred hcCCCchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008482 183 FFNNKPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILL 262 (564)
Q Consensus 183 ~f~~~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (564)
.+...+ .+..+.+ ..|.. .++..++. .+
T Consensus 164 -----------------~~~~~l----~~~~g~~--------~~f~~----~~~~~~~~-------------------~~ 191 (491)
T 4aps_A 164 -----------------LIVGAA----QEAAGYH--------VAFSL----AAIGMFIG-------------------LL 191 (491)
T ss_dssp -----------------HHHHHH----HHHSCHH--------HHHHH----HHHHHHHH-------------------HH
T ss_pred -----------------HHHHHH----HhhhhHH--------HHHHH----HHHHHHHH-------------------HH
Confidence 222111 1101000 00110 00000000 00
Q ss_pred HHHHhhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhc-cc----------------cCCCCCCCCCCCCCCCC
Q 008482 263 LLLLASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEK-MH----------------VRQDPVGYHRLPSEPDV 325 (564)
Q Consensus 263 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~ 325 (564)
+.+... +...++..+.. ++ +...++..+. +. ..+..+.++........
T Consensus 192 ~~~~~~------~~~~~~~~~~~------~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (491)
T 4aps_A 192 VYYFGG------KKTLDPHYLRP------TD---PLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV 256 (491)
T ss_dssp HHHHHH------HTTCCSCCSCC------SC---CCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHhC------cccccccccCC------CC---ccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence 000000 00000000000 00 0000000000 00 00000000000000000
Q ss_pred C--CCCCCCCccCCCCCCcHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhh
Q 008482 326 G--TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGR 402 (564)
Q Consensus 326 ~--~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GR 402 (564)
. ..........+....+..+..+...+|.+++..++.........+.+....++ .+.+....+...++.++...++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (491)
T 4aps_A 257 AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYT 336 (491)
T ss_dssp HHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHH
Confidence 0 00000000000000011122233345555555444444444444455555555 45554566778888999999999
Q ss_pred hhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh----------cCcchHHHHHHHHHhhhccccchhHHHHHHhh
Q 008482 403 FGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----------GLPGALYAGSILVGVCYGSQWSLMPTIASEIF 472 (564)
Q Consensus 403 l~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~----------~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~F 472 (564)
++.|+++||+++|+. .+.+.+.....+.+++++++.. .....+.+..++.|++.+........++.|.+
T Consensus 337 ~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 337 PFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp HHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 999999999987653 3334444555555555544322 12224566778889999999999999999999
Q ss_pred ccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008482 473 GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 548 (564)
Q Consensus 473 G~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~ 548 (564)
..++-|+..|+......+|.. +++.+.+.+.|.. |...|.+.+++++++.++.++...+.|+
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAKS-------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGSS-------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888875 5666788887752 5778888888888877666655544444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.72 E-value=8.2e-18 Score=174.52 Aligned_cols=332 Identities=13% Similarity=0.019 Sum_probs=223.6
Q ss_pred ccccccccHHHHhhcCCCcchhhHHHHhhhhhccc-cccchhhhccccCCCCCCCccchhhhcccCcHHHHHHHHHHHHH
Q 008482 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (564)
Q Consensus 29 ~Y~fS~ys~~L~~~lg~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~~~iG~vl~~~ 107 (564)
...++..-|.+++++|+|.+|...+..+..++..+ .++.|.+.||+| +|.++.++.++..+
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------------------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------------------CCCCCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CchhHHHHHHHHHH
Confidence 34455566778899999999999888888887765 678888888875 88899999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeeehhhhhhhHHHHHHHHHhhcCC
Q 008482 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGFVGLSGAILIQVYQTFFNN 186 (564)
Q Consensus 108 Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~~a~~GLsa~i~s~i~~~~f~~ 186 (564)
+..+.... ++++.+....++.|.+.+..+.+......+++| ++|+++.|+.....+++..+-.
T Consensus 78 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------- 141 (375)
T 2gfp_A 78 ATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAP--------- 141 (375)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhH---------
Confidence 99886553 246677778889999999999999999999997 6899999998888888876643
Q ss_pred CchhHHHHHHHHHHHHhhhhheeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008482 187 KPTSYLLLLALLASIDPLLLMWFVRICNTNEGNEKKHLNSFSLIALIVAAYLMVIIILEHIFALPFLVRVLTLILLLLLL 266 (564)
Q Consensus 187 ~~~~~llfla~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 266 (564)
.+... +.+..+.+ ..+. ..+ +..++.
T Consensus 142 -------------~~~~~----l~~~~~~~--------~~~~----~~~-------------------------~~~~~~ 167 (375)
T 2gfp_A 142 -------------LIGGL----LDTMWNWR--------ACYL----FLL-------------------------VLCAGV 167 (375)
T ss_dssp -------------HHHHH----SSCHHHHH--------HHHH----HHH-------------------------HHHHHH
T ss_pred -------------HHHHH----HHHhccHH--------HHHH----HHH-------------------------HHHHHH
Confidence 22211 11100000 0000 000 000000
Q ss_pred hhhhhhhhhccCCCCCCCCcCccccCCCCCCCccchhhhccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCcHHHH
Q 008482 267 ASPLYVAIRVQGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 346 (564)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 346 (564)
...... ..+ ++ +++ +++ ++ +...+.++.
T Consensus 168 ~~~~~~--~~~-~~-~~~-----------------------------~~~-----~~--------------~~~~~~~~~ 195 (375)
T 2gfp_A 168 TFSMAR--WMP-ET-RPV-----------------------------DAP-----RT--------------RLLTSYKTL 195 (375)
T ss_dssp HCCCCC--SSC-CC-STT-----------------------------TCC-----CC--------------CTTTCSTHH
T ss_pred HHHHHH--HCc-cc-CCC-----------------------------Ccc-----cc--------------cHHHHHHHH
Confidence 010000 000 00 000 000 00 011234688
Q ss_pred hhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHH
Q 008482 347 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 425 (564)
Q Consensus 347 l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~ 425 (564)
+|++++|.+.+..++.......+....+.+.++ .|.++.+++...++.++...+|+++.|+++||.++ .....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~ 269 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST------LMWQS 269 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------HHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 999999999988888776666666667777766 68887778888999999999999999999999843 11122
Q ss_pred HHH-HHHHHHHHHHHh---cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhh
Q 008482 426 ITL-AAMSIGHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 501 (564)
Q Consensus 426 ~~~-~l~~i~~ll~~~---~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g 501 (564)
... ...++..+.... .....+++..++.|+++|..+......+.|.+. ++.|+..|+......+|.. +++.+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g 347 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSA 347 (375)
T ss_dssp HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCT
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 111 111111111111 122235567788999999999999999999997 8999999999988888885 5777899
Q ss_pred hhhhccc
Q 008482 502 YIYDREA 508 (564)
Q Consensus 502 ~iyD~~~ 508 (564)
.++|..+
T Consensus 348 ~l~~~~~ 354 (375)
T 2gfp_A 348 MLPQTGQ 354 (375)
T ss_dssp HHHHHHH
T ss_pred HHhcCCc
Confidence 9988643
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.69 E-value=1.5e-17 Score=176.67 Aligned_cols=198 Identities=13% Similarity=0.016 Sum_probs=129.2
Q ss_pred cHHHHhhcHHHHHHHHHHHhhhhchhheecchhHHHhhc-C---CCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008482 342 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-G---YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 417 (564)
Q Consensus 342 t~~~~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g---~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 417 (564)
+.++.++++++|.+++..++....-..+.+..+...++. + .+........++..+.+.+|+++.|+++||+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~--- 288 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG--- 288 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcH---
Confidence 356789999999887664443322222222334444432 2 112223456667778889999999999999954
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhH-hhhhhhHHHhh
Q 008482 418 WARPLFMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYIF 495 (564)
Q Consensus 418 ~~R~~~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~-~~a~~iG~~lf 495 (564)
...+.....+.+++.+++... .+..+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|.. +
T Consensus 289 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~ 364 (417)
T 2cfq_A 289 ---KNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-F 364 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-H
Confidence 334445555555555444332 2223444556677777777666778999999999999999985 666667774 5
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccccC
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVRE 564 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~~r~~~~~~~~~~~~~~~~~~~ 564 (564)
++.+.|.++|..+ |...|.+.+++++++.++.++...+ +..++..||||.|
T Consensus 365 gp~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~ 415 (417)
T 2cfq_A 365 MSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSG------PGPLSLLRRQVNE 415 (417)
T ss_dssp HTHHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTTSSCC------SCTTCSSSSSSTT
T ss_pred hhhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHhhhcC------CCchHHHHHHhhc
Confidence 6778999999654 6889998888888877555432221 2225667888876
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.50 E-value=2.8e-13 Score=146.81 Aligned_cols=137 Identities=12% Similarity=-0.044 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhcC------CCcchhhHHHHhhhhhccc-cccchhhhccc-cCCCCCCCcc
Q 008482 13 WVSTVASIWIQCTSGSLYTFSIYSPALKTTQH------YDQTTLDTVSVFKDIGANT-GTLSGVLYTYS-TSDHSSHHPR 84 (564)
Q Consensus 13 w~~l~a~~~i~l~~G~~Y~fS~ys~~L~~~lg------~sq~~~~~i~~a~~vg~~~-g~~~G~l~d~~-~~~~~~~~~~ 84 (564)
|+..+...+...+... ..+...+.+++++| +|..|...+.....++..+ .++.|.+.||+ |
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g--------- 83 (524)
T 2xut_A 15 PYIIASEACERFSFYG--MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG--------- 83 (524)
T ss_dssp THHHHHHHHHHHHHHH--HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC---------
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 5555544444443221 22334455788899 9999999887777777765 56788888876 5
Q ss_pred chhhhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceee
Q 008482 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVG 163 (564)
Q Consensus 85 ~~~~~~~~GP~~~~~iG~vl~~~Gy~~~~l~~~g~i~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~G 163 (564)
+|.++.++.++..++++++..+ . .+++.+....++.|.|.+..+.+......++|| ++||.+.+
T Consensus 84 ---------~r~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 84 ---------KYNTILWLSLIYCVGHAFLAIF--E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHT--S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 9999999999999999885442 1 146667777888899999999999999999998 46887766
Q ss_pred e---ehhhhhhhHHH
Q 008482 164 I---MKGFVGLSGAI 175 (564)
Q Consensus 164 l---~~a~~GLsa~i 175 (564)
+ ......+++.+
T Consensus 149 ~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 149 AFDMFYFTINFGSFF 163 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 5 55555555544
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.42 E-value=3.1e-13 Score=144.93 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=88.7
Q ss_pred ccccccc---HHHHhhcCCC----c----chhhHHHHhhhhhcccc-ccchhhhccccCCCCCCCccchhhhcccCcHHH
Q 008482 30 YTFSIYS---PALKTTQHYD----Q----TTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV 97 (564)
Q Consensus 30 Y~fS~ys---~~L~~~lg~s----q----~~~~~i~~a~~vg~~~g-~~~G~l~d~~~~~~~~~~~~~~~~~~~~GP~~~ 97 (564)
|+.++.+ +++++.++.+ . ++...+..+..+|..+| ++.|.+.||+ |+|++
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------------------GRk~~ 87 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------------------GRRDS 87 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCHHH
Confidence 4445555 4455555332 2 23334555666777663 5677777776 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhhhcC-CCCcceeeee
Q 008482 98 LLVGAIQCFAGYFLMWASVVGLI-----------PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (564)
Q Consensus 98 ~~iG~vl~~~Gy~~~~l~~~g~i-----------~~~~~~~l~~~~~l~G~g~~~~~ta~l~t~~k~FP-~~RG~a~Gl~ 165 (564)
++++.+++.+|-++......+.. -..+++.+...=++.|+|.|..+..+..-...+.| ++||...++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 99999999999887432211110 01467888888999999999999999999999998 5799988877
Q ss_pred hhhhhhhHHH
Q 008482 166 KGFVGLSGAI 175 (564)
Q Consensus 166 ~a~~GLsa~i 175 (564)
..+..++..+
T Consensus 168 ~~~~~~g~~~ 177 (491)
T 4gc0_A 168 QFAIIFGQLL 177 (491)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 7666666544
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.98 E-value=5.1e-09 Score=112.13 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhhhhchhheecchhHHHhh------cCCCccchhHHHHHHHHHHHHhhhhhhhhhhh-hhhcccCchhH
Q 008482 350 LEFWILSFAMACGMGSGLATVNNISQIGGS------LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPL 422 (564)
Q Consensus 350 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~------~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~R~~ 422 (564)
+.+|.+++..++....-..+...+.+..++ +|.++.+.+...++..+.+.++.+.+|+++|| ++ |.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------ARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------chH
Confidence 467888777777665555565666676654 79998889999999999999999999999999 85 445
Q ss_pred HHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCc--hhhhhhhHhhhhhhHHHhhhhhh
Q 008482 423 FMVITLAAMSIGHLIIASG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRV 499 (564)
Q Consensus 423 ~l~~~~~l~~i~~ll~~~~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~--fg~nyg~~~~a~~iG~~lf~~~l 499 (564)
.+....++.+++.++.... ....++++-++.|++.|......+++++|.|..++ -+..+++...+..+|.. +++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 5666667777776665533 34457778889999999999999999999999887 67778877777777774 57778
Q ss_pred hhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008482 500 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 543 (564)
Q Consensus 500 ~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l~ 543 (564)
.|.+.|..+ ++..|.+.++.+++++++.++..
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888654 79999998887777776655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.94 E-value=4.7e-09 Score=110.45 Aligned_cols=176 Identities=15% Similarity=0.068 Sum_probs=133.7
Q ss_pred hcHHHHHHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHH
Q 008482 348 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 427 (564)
Q Consensus 348 ~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~ 427 (564)
+.+.++.+++..++....-.++..-+..+.++. .++.+.+...++..+...++.+.+|+++||++ |..++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------PRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------chHHHHHH
Confidence 344556666555555443333444566677788 88888999999999999999999999999995 44456666
Q ss_pred HHHHHHHHHHHHh-----cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhh
Q 008482 428 LAAMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 502 (564)
Q Consensus 428 ~~l~~i~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~ 502 (564)
.++.+++.++... .....++++-++.|++.|..+....++++|.+..|+-++..|+...+..+|.. +++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6677777665543 33446777889999999999999999999999999999999999888888885 57777888
Q ss_pred hhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 008482 503 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 542 (564)
Q Consensus 503 iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~~l 542 (564)
+.+..++ ++.+|++.++++++..++..+.
T Consensus 178 l~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 178 GMAWFND-----------WHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHTCC-----------STTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 8876553 5788888887777766555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.70 E-value=9.5e-08 Score=100.15 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=102.2
Q ss_pred hhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH---Hh-cCcchHHH
Q 008482 373 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII---AS-GLPGALYA 448 (564)
Q Consensus 373 ~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~---~~-~~~~~l~~ 448 (564)
+..+.+++|.++.+.+...++..+...++.+.+|+++||++ |.+.+....++.+++.++. .. .....+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------YKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 55566788999999999999999999999999999999995 4445666666777666554 33 23335777
Q ss_pred HHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhh
Q 008482 449 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 504 (564)
Q Consensus 449 ~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iy 504 (564)
+-++.|++.|......+++++|.+..|+-+...|+...+..+|.. +++.+.+.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 789999999999999999999999999999989988888888885 5677788877
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.68 E-value=7.1e-08 Score=104.15 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHHhhhhchhheecchhHHH-hhcC------CCccchhHHHHHHHHHHHHhhhhhhhhhhhh-hhcccCch
Q 008482 349 TLEFWILSFAMACGMGSGLATVNNISQIG-GSLG------YSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWAR 420 (564)
Q Consensus 349 t~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g------~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~R 420 (564)
++.+|++++..++....-.++...+.... +++| .++.+.+...++..+...++.+.+|+++||+ ++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 35678777777776665555656666655 4578 8888899999999999999999999999999 753
Q ss_pred hHHHHHHHHHHHHHHHHHHh-c-CcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhh---hhhhHhhhhhhHHHhh
Q 008482 421 PLFMVITLAAMSIGHLIIAS-G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT---IFNTITIANPVGSYIF 495 (564)
Q Consensus 421 ~~~l~~~~~l~~i~~ll~~~-~-~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~---nyg~~~~a~~iG~~lf 495 (564)
..+.+..++.+++.++... . ....+++..++.|++.|......+++++|.|..++-++ .+|+...+..+|.. +
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~ 163 (524)
T 2xut_A 86 -NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-F 163 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-H
Confidence 2344555566666555443 2 33457777889999999999999999999999888753 45557777777774 5
Q ss_pred hhhhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHHHHHHHH
Q 008482 496 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 540 (564)
Q Consensus 496 ~~~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~a~vl~~ 540 (564)
++.+.|.+.|..+ ++..|.+.+++.+++.++.+
T Consensus 164 g~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 164 ASLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHH
Confidence 6667888887643 78999988877776664443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.68 E-value=1.1e-08 Score=105.43 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=124.3
Q ss_pred HHHHHHHhhhhchhheecchhHHHhhcCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 008482 354 ILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 433 (564)
Q Consensus 354 ll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i 433 (564)
++++..++......++...+..+.++.|.++.+.+...++..+.+.++.+.+|+++||++||+. +.....+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHH
Confidence 3444444443334444455677778899999889999999999999999999999999976543 3344445555
Q ss_pred HHHHHHh-cCcchHHHHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHHhhhhhhhhhhhhcccCCCC
Q 008482 434 GHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEG 512 (564)
Q Consensus 434 ~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~lf~~~l~g~iyD~~~~~~~ 512 (564)
+.++... .....+++..++.|++.|......+++++|.+..|+.++..++...+..+|.. +++.+.+.+.|..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc----
Confidence 5444332 23335677788999999999999999999999999999999999888888885 57778888887643
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHH
Q 008482 513 NKCTGTHCFMLSFFIMGSATLCGSL 537 (564)
Q Consensus 513 ~~C~G~~Cy~~af~i~~~l~v~a~v 537 (564)
++.+|.+..+++++..+
T Consensus 153 --------~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 68888887777666554
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.13 E-value=1.2e-06 Score=92.39 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred HhhcHHHHHHHHHHHhhhhchhheecchhHHHhh-cCCCccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHH
Q 008482 346 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 424 (564)
Q Consensus 346 ~l~t~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l 424 (564)
.+|+++||.+...+++......++..-++...++ .|.++.+....+++..+...++++.+|+++||++||+. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~------l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------L 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCH------H
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------H
Confidence 5789999999887776655545556667776654 79999899999999999999999999999999986532 2
Q ss_pred HHHHHHHHH---HHHHHHhc--CcchHHHHHHHHHhhhccccchhHHHHHHhhc--cCchhhhhhhHhhhhhhHHHhhhh
Q 008482 425 VITLAAMSI---GHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFG--VLQMGTIFNTITIANPVGSYIFSV 497 (564)
Q Consensus 425 ~~~~~l~~i---~~ll~~~~--~~~~l~~~~~l~G~~~G~~~~~~P~ivse~FG--~k~fg~nyg~~~~a~~iG~~lf~~ 497 (564)
.....+.++ ..+..... ....++....+.|+..|..++....++.++.- .|+.+..+|....+..+|.. +++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 222222111 11111100 00012223333344444333333333333332 24556667776555555553 455
Q ss_pred hhhhhhhhcccCCCCccccCCcccHHHHHHHHHHHHH
Q 008482 498 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 534 (564)
Q Consensus 498 ~l~g~iyD~~~~~~~~~C~G~~Cy~~af~i~~~l~v~ 534 (564)
.+.|.+.|. + ++..|++.++..++
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTT
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHH
Confidence 567777764 2 57788766555433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.95 E-value=1.8e-05 Score=84.25 Aligned_cols=101 Identities=20% Similarity=0.116 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHh-------------------cCcchHH
Q 008482 387 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-------------------GLPGALY 447 (564)
Q Consensus 387 aa~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~R~~~l~~~~~l~~i~~ll~~~-------------------~~~~~l~ 447 (564)
.+..+|.+.++..+|-+++|+++||+| |.+.+.+..++..++.++.+. .....++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~G------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFG------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 356778888999999999999999995 445566666666666554331 1222467
Q ss_pred HHHHHHHhhhccccchhHHHHHHhhccCchhhhhhhHhhhhhhHHH
Q 008482 448 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 493 (564)
Q Consensus 448 ~~~~l~G~~~G~~~~~~P~ivse~FG~k~fg~nyg~~~~a~~iG~~ 493 (564)
++=.+.|++.|+...+.|.+++|....++-|..-++...+..+|..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 7778999999999999999999999999888888887777777764
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.69 E-value=1.2e+02 Score=24.00 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 008482 526 FIMGSATLCGS 536 (564)
Q Consensus 526 ~i~~~l~v~a~ 536 (564)
-+.+++.++|+
T Consensus 16 gvi~gilliGl 26 (79)
T 2knc_B 16 SVMGAILLIGL 26 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444454
No 16
>3ggh_A K88 fimbrial protein AD; immunoglobulin like fold, fimbrium, plasmid, cell adhesion; 1.64A {Escherichia coli} PDB: 3gea_A 3hlr_A
Probab=21.86 E-value=24 Score=34.71 Aligned_cols=7 Identities=57% Similarity=0.852 Sum_probs=2.7
Q ss_pred CCCCccc
Q 008482 79 SSHHPRQ 85 (564)
Q Consensus 79 ~~~~~~~ 85 (564)
||||.||
T Consensus 7 ~~~~~~~ 13 (275)
T 3ggh_A 7 HHHHHRQ 13 (275)
T ss_dssp CCSSSCC
T ss_pred ccccccc
Confidence 3333343
Done!