Query 008484
Match_columns 564
No_of_seqs 200 out of 1665
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 12:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 2E-106 3E-111 870.2 64.2 535 30-564 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 7E-104 1E-108 841.1 60.5 518 27-564 22-554 (596)
3 PLN02991 oxidoreductase 100.0 7E-103 1E-107 829.5 59.4 506 19-564 15-530 (543)
4 PLN02792 oxidoreductase 100.0 3E-102 5E-107 826.6 58.4 500 29-564 13-523 (536)
5 PLN02835 oxidoreductase 100.0 1E-101 2E-106 824.8 59.8 510 16-564 13-531 (539)
6 PLN02354 copper ion binding / 100.0 2E-101 3E-106 824.6 59.1 520 13-564 10-538 (552)
7 PLN02168 copper ion binding / 100.0 9E-100 2E-104 807.3 59.1 499 29-564 23-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 1.5E-99 3E-104 798.5 58.5 524 27-564 23-555 (563)
9 PLN02604 oxidoreductase 100.0 5.6E-95 1.2E-99 781.9 61.3 514 27-564 19-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 5.8E-95 1.3E-99 779.7 58.6 514 26-564 17-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.8E-94 3.9E-99 776.1 58.4 509 32-564 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 3.5E-91 7.7E-96 748.1 54.7 489 33-547 9-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.8E-75 3.9E-80 625.3 50.9 422 32-545 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 6.4E-72 1.4E-76 594.1 46.1 423 32-545 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 5.9E-71 1.3E-75 582.0 44.9 402 34-546 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 3E-57 6.4E-62 480.7 42.3 410 35-546 35-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 9.5E-47 2.1E-51 377.8 25.5 264 29-316 24-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 8.2E-35 1.8E-39 248.9 12.2 116 38-153 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.2E-29 6.9E-34 223.5 11.4 107 436-546 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 2E-26 4.4E-31 209.8 13.2 149 164-314 1-158 (159)
21 TIGR01480 copper_res_A copper- 99.7 2.9E-16 6.3E-21 169.3 20.6 227 53-293 248-572 (587)
22 TIGR03095 rusti_cyanin rusticy 99.7 8E-17 1.7E-21 143.0 12.5 102 47-150 37-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 2.9E-15 6.2E-20 150.6 24.0 236 195-546 47-297 (311)
24 PRK10965 multicopper oxidase; 99.6 6.9E-14 1.5E-18 149.9 22.2 232 50-295 211-510 (523)
25 PLN02835 oxidoreductase 99.5 6.9E-13 1.5E-17 142.7 20.3 240 51-294 191-498 (539)
26 TIGR03389 laccase laccase, pla 99.5 3E-12 6.5E-17 138.9 25.4 242 52-295 167-507 (539)
27 PRK10883 FtsI repressor; Provi 99.5 7.1E-13 1.5E-17 140.8 20.0 218 49-295 207-455 (471)
28 TIGR03096 nitroso_cyanin nitro 99.4 4.4E-12 9.6E-17 108.6 11.9 99 26-140 18-124 (135)
29 COG2132 SufI Putative multicop 99.4 1.3E-11 2.9E-16 131.5 18.0 234 48-295 186-436 (451)
30 PLN02168 copper ion binding / 99.3 8.3E-11 1.8E-15 126.4 21.7 240 51-293 188-501 (545)
31 PLN02991 oxidoreductase 99.3 1.9E-10 4.2E-15 123.4 22.3 240 51-293 190-496 (543)
32 PLN02354 copper ion binding / 99.3 8.6E-11 1.9E-15 126.8 19.6 239 52-293 190-504 (552)
33 TIGR03388 ascorbase L-ascorbat 99.3 1.4E-10 2.9E-15 126.0 20.2 230 64-295 204-511 (541)
34 TIGR03390 ascorbOXfungal L-asc 99.3 1.7E-10 3.8E-15 124.8 20.3 239 52-294 172-518 (538)
35 PLN02792 oxidoreductase 99.3 3.5E-10 7.6E-15 121.6 21.8 241 50-293 178-489 (536)
36 PLN02604 oxidoreductase 99.3 7.8E-11 1.7E-15 128.2 17.1 226 63-294 224-533 (566)
37 PLN02191 L-ascorbate oxidase 99.2 1.2E-09 2.7E-14 118.8 20.4 237 55-295 218-534 (574)
38 PF07731 Cu-oxidase_2: Multico 99.1 6.2E-10 1.3E-14 98.9 10.9 79 214-294 32-121 (138)
39 PLN00044 multi-copper oxidase- 99.0 1.1E-08 2.4E-13 110.7 19.4 226 63-293 217-519 (596)
40 KOG1263 Multicopper oxidases [ 98.8 2.7E-07 5.8E-12 99.0 19.8 78 216-294 430-522 (563)
41 PF07732 Cu-oxidase_3: Multico 98.7 7.4E-08 1.6E-12 82.5 9.1 91 439-547 25-116 (117)
42 PRK02710 plastocyanin; Provisi 98.6 9.2E-07 2E-11 76.1 11.6 73 63-150 47-119 (119)
43 PF13473 Cupredoxin_1: Cupredo 98.5 2.4E-07 5.1E-12 77.9 6.0 74 59-149 31-104 (104)
44 TIGR02656 cyanin_plasto plasto 98.3 3.4E-06 7.3E-11 70.1 8.3 81 63-150 17-99 (99)
45 TIGR02657 amicyanin amicyanin. 98.1 1.6E-05 3.5E-10 63.6 8.4 73 63-150 11-83 (83)
46 PF00127 Copper-bind: Copper b 98.1 8.5E-06 1.8E-10 67.7 6.9 82 63-150 17-99 (99)
47 TIGR03094 sulfo_cyanin sulfocy 98.0 0.0001 2.2E-09 65.8 12.5 101 53-154 74-189 (195)
48 TIGR03095 rusti_cyanin rusticy 98.0 2.3E-05 5.1E-10 69.8 8.5 93 439-545 51-148 (148)
49 PRK02888 nitrous-oxide reducta 98.0 3.1E-05 6.7E-10 83.1 9.8 99 43-152 533-635 (635)
50 PF06525 SoxE: Sulfocyanin (So 97.9 8.7E-05 1.9E-09 67.8 10.7 103 52-155 74-191 (196)
51 PF00394 Cu-oxidase: Multicopp 97.9 5.6E-05 1.2E-09 68.7 9.0 94 438-545 58-156 (159)
52 TIGR02375 pseudoazurin pseudoa 97.6 0.0003 6.5E-09 59.7 8.4 75 63-153 15-90 (116)
53 COG3794 PetE Plastocyanin [Ene 97.5 0.00048 1E-08 59.1 8.4 75 63-151 54-128 (128)
54 TIGR02656 cyanin_plasto plasto 97.4 0.00074 1.6E-08 56.0 8.1 83 440-545 17-99 (99)
55 TIGR03102 halo_cynanin halocya 97.3 0.0017 3.6E-08 55.1 8.7 73 63-150 42-115 (115)
56 TIGR03096 nitroso_cyanin nitro 97.1 0.0027 5.8E-08 54.9 8.1 60 440-530 61-120 (135)
57 PF00127 Copper-bind: Copper b 96.6 0.011 2.3E-07 49.0 7.9 84 439-545 16-99 (99)
58 COG4454 Uncharacterized copper 96.4 0.029 6.3E-07 49.2 9.4 88 59-151 59-158 (158)
59 PRK02888 nitrous-oxide reducta 96.4 0.016 3.4E-07 62.8 9.4 77 442-546 557-634 (635)
60 PF13473 Cupredoxin_1: Cupredo 96.2 0.02 4.2E-07 47.9 7.3 67 440-538 35-101 (104)
61 PRK02710 plastocyanin; Provisi 95.6 0.048 1E-06 46.8 7.4 72 441-545 48-119 (119)
62 TIGR02695 azurin azurin. Azuri 95.3 0.091 2E-06 44.6 7.6 86 63-148 16-124 (125)
63 PF06525 SoxE: Sulfocyanin (So 94.9 0.094 2E-06 48.2 7.3 88 196-293 74-171 (196)
64 COG4454 Uncharacterized copper 94.6 0.18 3.8E-06 44.5 7.7 93 442-545 65-157 (158)
65 TIGR02375 pseudoazurin pseudoa 94.3 0.26 5.7E-06 41.9 8.2 38 508-549 54-91 (116)
66 PRK10378 inactive ferrous ion 94.3 0.48 1E-05 48.7 11.5 79 59-153 40-119 (375)
67 PF00116 COX2: Cytochrome C ox 93.9 0.68 1.5E-05 39.7 10.0 62 216-296 46-107 (120)
68 PF00116 COX2: Cytochrome C ox 93.7 0.49 1.1E-05 40.6 8.8 72 63-149 46-119 (120)
69 TIGR03102 halo_cynanin halocya 92.2 1.2 2.7E-05 37.7 9.0 74 440-545 42-115 (115)
70 TIGR02866 CoxB cytochrome c ox 92.0 1.3 2.9E-05 41.7 9.9 76 63-153 117-194 (201)
71 TIGR02657 amicyanin amicyanin. 91.5 1.3 2.8E-05 35.2 8.0 73 440-545 11-83 (83)
72 COG4263 NosZ Nitrous oxide red 86.8 1.1 2.3E-05 46.3 5.1 77 63-150 558-636 (637)
73 PF12690 BsuPI: Intracellular 86.7 6.4 0.00014 31.2 8.6 66 225-291 3-82 (82)
74 TIGR03094 sulfo_cyanin sulfocy 86.3 7.3 0.00016 35.5 9.5 98 438-547 83-187 (195)
75 COG1622 CyoA Heme/copper-type 84.5 11 0.00023 36.7 10.7 77 63-154 137-215 (247)
76 COG1470 Predicted membrane pro 83.8 63 0.0014 34.2 17.3 176 65-296 278-470 (513)
77 TIGR02866 CoxB cytochrome c ox 83.1 5.7 0.00012 37.4 8.1 77 440-548 117-194 (201)
78 TIGR02695 azurin azurin. Azuri 81.5 9.8 0.00021 32.6 7.9 77 216-292 16-111 (125)
79 PF12690 BsuPI: Intracellular 79.8 4.2 9E-05 32.2 4.9 58 64-132 17-80 (82)
80 COG3794 PetE Plastocyanin [Ene 79.3 11 0.00025 32.5 7.8 74 441-546 55-128 (128)
81 COG1622 CyoA Heme/copper-type 74.8 10 0.00022 36.9 7.0 63 215-296 136-198 (247)
82 PF10633 NPCBM_assoc: NPCBM-as 73.9 3.1 6.8E-05 32.4 2.7 61 67-131 1-70 (78)
83 PF04151 PPC: Bacterial pre-pe 70.0 25 0.00054 26.6 7.0 65 216-292 5-69 (70)
84 PF01835 A2M_N: MG2 domain; I 64.8 17 0.00036 29.6 5.4 71 219-293 10-85 (99)
85 PF05506 DUF756: Domain of unk 63.8 42 0.00091 26.8 7.5 63 62-133 8-73 (89)
86 PF07705 CARDB: CARDB; InterP 63.2 68 0.0015 25.6 8.9 66 219-293 14-83 (101)
87 PF05938 Self-incomp_S1: Plant 56.3 37 0.00081 28.3 6.2 69 74-152 2-71 (110)
88 TIGR03079 CH4_NH3mon_ox_B meth 55.4 57 0.0012 33.2 8.0 22 102-123 331-352 (399)
89 MTH00047 COX2 cytochrome c oxi 54.8 48 0.001 31.0 7.1 62 216-296 116-177 (194)
90 TIGR01433 CyoA cytochrome o ub 53.7 36 0.00078 32.7 6.3 62 216-296 139-200 (226)
91 PRK10378 inactive ferrous ion 48.8 50 0.0011 34.3 6.7 61 216-292 44-104 (375)
92 PF10633 NPCBM_assoc: NPCBM-as 46.8 85 0.0018 24.2 6.4 64 220-292 1-74 (78)
93 MTH00140 COX2 cytochrome c oxi 46.6 2.7E+02 0.0059 26.7 11.9 77 62-153 139-217 (228)
94 TIGR01432 QOXA cytochrome aa3 44.6 55 0.0012 31.2 6.0 61 216-295 130-190 (217)
95 MTH00008 COX2 cytochrome c oxi 43.8 80 0.0017 30.4 7.0 61 216-295 140-200 (228)
96 MTH00047 COX2 cytochrome c oxi 43.8 2.1E+02 0.0047 26.7 9.6 76 440-547 116-192 (194)
97 PF11142 DUF2917: Protein of u 41.5 1E+02 0.0022 23.0 5.7 46 218-275 2-47 (63)
98 PTZ00047 cytochrome c oxidase 41.2 1.3E+02 0.0027 27.2 7.2 62 216-296 73-134 (162)
99 PF05506 DUF756: Domain of unk 40.5 1.9E+02 0.004 23.0 9.3 58 224-292 20-77 (89)
100 PRK10525 cytochrome o ubiquino 40.3 59 0.0013 32.9 5.6 62 216-296 151-212 (315)
101 COG1188 Ribosome-associated he 40.2 22 0.00048 29.1 2.1 29 54-82 36-64 (100)
102 MTH00140 COX2 cytochrome c oxi 39.9 1.3E+02 0.0028 28.9 7.8 77 439-547 139-216 (228)
103 TIGR01433 CyoA cytochrome o ub 39.8 85 0.0018 30.1 6.5 75 441-547 140-215 (226)
104 COG3354 FlaG Putative archaeal 37.6 2.2E+02 0.0047 25.1 7.7 64 224-292 70-141 (154)
105 PRK13202 ureB urease subunit b 36.4 1.1E+02 0.0024 25.3 5.5 59 64-122 12-83 (104)
106 PF07691 PA14: PA14 domain; I 36.4 2.5E+02 0.0054 24.1 8.7 62 217-283 53-121 (145)
107 PTZ00047 cytochrome c oxidase 34.4 2.2E+02 0.0048 25.7 7.7 75 440-546 73-148 (162)
108 PF05753 TRAP_beta: Translocon 32.3 2.7E+02 0.0058 25.7 8.2 23 109-131 81-104 (181)
109 MTH00154 COX2 cytochrome c oxi 32.0 1.8E+02 0.0039 27.9 7.3 62 216-296 140-201 (227)
110 MTH00098 COX2 cytochrome c oxi 31.4 1.7E+02 0.0037 28.1 7.1 61 216-295 140-200 (227)
111 MTH00129 COX2 cytochrome c oxi 31.2 1.4E+02 0.003 28.7 6.5 61 216-295 140-200 (230)
112 PRK05461 apaG CO2+/MG2+ efflux 30.7 1.2E+02 0.0027 26.1 5.4 48 225-275 32-83 (127)
113 PF10989 DUF2808: Protein of u 30.5 58 0.0012 28.9 3.4 27 505-531 98-128 (146)
114 MTH00185 COX2 cytochrome c oxi 30.3 2.1E+02 0.0045 27.6 7.4 62 216-296 140-201 (230)
115 PF14478 DUF4430: Domain of un 29.7 41 0.00089 25.3 2.1 28 49-76 38-68 (68)
116 PF04379 DUF525: Protein of un 29.7 81 0.0018 25.4 3.8 48 225-275 15-66 (90)
117 PF14481 Fimbrial_PilY2: Type 28.4 5.5 0.00012 32.6 -3.0 15 62-76 64-79 (118)
118 PF14451 Ub-Mut7C: Mut7-C ubiq 28.1 52 0.0011 26.0 2.4 27 50-76 48-74 (81)
119 TIGR00192 urease_beta urease, 26.5 2.1E+02 0.0046 23.5 5.6 59 64-122 12-82 (101)
120 smart00758 PA14 domain in bact 26.3 4.1E+02 0.0088 22.6 8.2 63 218-285 52-115 (136)
121 MTH00051 COX2 cytochrome c oxi 25.4 2.3E+02 0.005 27.3 6.8 61 216-295 144-204 (234)
122 PRK13203 ureB urease subunit b 25.1 2.3E+02 0.0049 23.4 5.5 59 64-122 12-82 (102)
123 PF10636 hemP: Hemin uptake pr 24.7 1.2E+02 0.0027 20.1 3.3 19 216-234 14-32 (38)
124 PF06030 DUF916: Bacterial pro 24.4 3.6E+02 0.0078 23.0 7.1 15 109-123 87-101 (121)
125 PF10989 DUF2808: Protein of u 24.3 2E+02 0.0043 25.4 5.8 31 267-297 98-131 (146)
126 TIGR02988 YaaA_near_RecF S4 do 24.2 48 0.001 24.1 1.5 23 53-75 35-58 (59)
127 PF14524 Wzt_C: Wzt C-terminal 24.1 2.7E+02 0.0059 23.6 6.7 72 219-293 30-107 (142)
128 MTH00023 COX2 cytochrome c oxi 24.0 3.2E+02 0.0069 26.5 7.6 62 216-296 151-212 (240)
129 PRK15211 fimbrial chaperone pr 23.6 2.7E+02 0.0059 26.8 6.9 18 63-80 75-92 (229)
130 PRK09918 putative fimbrial cha 23.4 2.6E+02 0.0056 26.9 6.8 17 63-79 76-92 (230)
131 PRK13202 ureB urease subunit b 23.1 2.8E+02 0.0061 22.9 5.7 64 217-281 12-85 (104)
132 COG2967 ApaG Uncharacterized p 23.0 84 0.0018 26.6 2.8 67 75-155 34-108 (126)
133 MTH00168 COX2 cytochrome c oxi 23.0 2.7E+02 0.0059 26.6 6.8 62 216-296 140-201 (225)
134 PF14392 zf-CCHC_4: Zinc knuck 22.7 1.2E+02 0.0027 21.1 3.3 41 496-536 4-45 (49)
135 cd00407 Urease_beta Urease bet 22.3 3E+02 0.0065 22.7 5.7 59 64-122 12-82 (101)
136 TIGR03396 PC_PLC phospholipase 22.2 6.8E+02 0.015 28.5 10.5 67 61-136 592-661 (690)
137 MTH00038 COX2 cytochrome c oxi 22.0 3.7E+02 0.0081 25.8 7.5 62 216-296 140-201 (229)
138 MTH00117 COX2 cytochrome c oxi 21.8 4.1E+02 0.0089 25.5 7.8 61 216-295 140-200 (227)
139 PF10634 Iron_transport: Fe2+ 21.1 5.8E+02 0.012 22.8 7.7 59 225-292 69-129 (151)
140 PF04744 Monooxygenase_B: Mono 21.0 2.2E+02 0.0048 29.3 5.8 75 35-123 249-333 (381)
141 PF03100 CcmE: CcmE; InterPro 20.5 25 0.00054 30.6 -0.8 70 31-104 31-101 (131)
142 PF05938 Self-incomp_S1: Plant 20.2 2.2E+02 0.0047 23.6 5.0 40 503-545 28-69 (110)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.6e-106 Score=870.17 Aligned_cols=535 Identities=68% Similarity=1.216 Sum_probs=444.3
Q ss_pred CceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCcccc
Q 008484 30 AAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQC 109 (564)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~ 109 (564)
+++|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEeCCCCcceeEecchhhhhcceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhccC
Q 008484 110 PIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQKMG 189 (564)
Q Consensus 110 ~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 189 (564)
+|+||++++|+|++++++||||||||.+.++.||+|+|||+++.+..+++...|+|++|+++||++.+...++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998568999999999988889999999999987766666677899999999999998887776655556
Q ss_pred CCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEEC
Q 008484 190 LPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIA 269 (564)
Q Consensus 190 ~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~ 269 (564)
..+..+++++|||+.++.++|+....+.+++++||+|||||||+++...+.|+|+||+|+|||+||.+++|++++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667899999999888888987777899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCC
Q 008484 270 PGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPK 349 (564)
Q Consensus 270 pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~ 349 (564)
+||||||+|++++.+|+|+|++.+..++...+.+....|+|+|++......+..+..+..++......+..++..+..+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQ 320 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccC
Confidence 99999999999998899999998654432223456789999999865433333333333333322222222344444444
Q ss_pred CCCCCCcCcceEEEEEEccCCCCCC----cccCCceeeeeecceeeecCcchhhhhhhccccccccCCCCCCCCCCCCCC
Q 008484 350 FPADVPQKVDRKLFYTIGFGKDSCP----TCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYT 425 (564)
Q Consensus 350 ~p~~~p~~~d~~~~~~~~~~~~~~~----~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 425 (564)
++...|..+++++++.+.+...... ...++.++.|++|+++|..|.+++|.+.+.+++|.+..+++..+|..++++
T Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 400 (539)
T TIGR03389 321 YPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYT 400 (539)
T ss_pred CCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCC
Confidence 4555555667776665554321110 011355788999999999999998887776666766667777778777766
Q ss_pred CCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeE
Q 008484 426 GAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAA 505 (564)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~ 505 (564)
+...+.+...+.++.++.++.|++|||+|+|........||||||||+||||++|.|.|+..+....+|+.+|++|||+.
T Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~ 480 (539)
T TIGR03389 401 GTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVG 480 (539)
T ss_pred CCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEE
Confidence 54212222234467889999999999999996532355899999999999999999999875544578999999999999
Q ss_pred ecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008484 506 VPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 564 (564)
Q Consensus 506 vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 564 (564)
||++||++|||++||||.|+|||||+||+..||+++|.+.++.+..++++++|.++|.|
T Consensus 481 vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 481 VPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999998888788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6.7e-104 Score=841.14 Aligned_cols=518 Identities=29% Similarity=0.470 Sum_probs=421.3
Q ss_pred cccCceEEEEEEEEEEEeecCC--ceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCC
Q 008484 27 PAEAAIKKYQFDVQVKNVSRLC--HAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPA 104 (564)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~ 104 (564)
.|.+.+++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+++++++|||||++|..++|+||++
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~ 101 (596)
T PLN00044 22 GAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVG 101 (596)
T ss_pred ccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCC
Confidence 3477889999999999999999 45689999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCC-CcEEEEeecccccCHHHHH
Q 008484 105 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPN-REEVILLGEWWHTDVEEVE 182 (564)
Q Consensus 105 ~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~ 182 (564)
+ +||+|+||++|+|+|++++++||||||+|...|+ +||+|+|||++++..+.|+..++ +|.+++++||++.+...+
T Consensus 102 ~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~- 179 (596)
T PLN00044 102 G-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL- 179 (596)
T ss_pred C-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-
Confidence 8 9999999999999999966899999999999998 89999999999877666665444 799999999999886653
Q ss_pred HhhhccCCCCCCCceEEEcCcCCCCCCCCC----CCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc
Q 008484 183 KQGQKMGLPPNMSDAHTINGKPGPLFPCSE----KHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT 258 (564)
Q Consensus 183 ~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~----~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~ 258 (564)
......|..+..++.++|||++...++|+. ...+.++|++||+|||||||++....+.|+|+||+|+|||+||.++
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 334444544556799999999654456642 2345899999999999999999999999999999999999999999
Q ss_pred cceEecEEEECCCceEEEEEEeCCCCc-eeEEEEeec-CCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCC-CCChhhh
Q 008484 259 KPFTTEAILIAPGQTTNVLVQANQKPG-RYFMAARPF-NDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPA-SNDSEFA 335 (564)
Q Consensus 259 ~p~~~d~v~l~pg~r~dv~v~~~~~pg-~y~l~~~~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~ 335 (564)
+|+.++.|.|++||||||+|+++++++ +|||++... ..+. .+++..+.|||+|.+.........|..|. +.+....
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~ 338 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA-VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFS 338 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc-cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhh
Confidence 999999999999999999999999765 899998642 2222 24567789999998754322111344453 4555444
Q ss_pred hhhhhhcccCCCCCCCCCCCcCcceEEEEEEccCC-CCC--CcccCCceeeeeecceeeecCcchhhhhhhccccccccC
Q 008484 336 LNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGK-DSC--PTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKA 412 (564)
Q Consensus 336 ~~~~~~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~-~~~--~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~ 412 (564)
.++...++.+..++.+...|...+....+.+.... ..+ .....| ++.|++||.||..|++++|.+++.+.+|.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~ 417 (596)
T PLN00044 339 INQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDG-KLRATLNEISYIAPSTPLMLAQIFNVPGVFKL 417 (596)
T ss_pred hhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCC-eEEEEECcccCCCCCCcchhhhhccCCCcccC
Confidence 44444455443333333333333333233322111 000 000023 68899999999999999998877788899988
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCC
Q 008484 413 DFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPAN 492 (564)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~ 492 (564)
+|+..||... ...++.++.+++|++|||+|+|.. ...||||||||+|+||+.|.|.|++. ....
T Consensus 418 ~fp~~pp~~~------------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~ 481 (596)
T PLN00044 418 DFPNHPMNRL------------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGT 481 (596)
T ss_pred CCCCCCCccc------------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccc
Confidence 8888776311 123577889999999999999953 56999999999999999999999965 4568
Q ss_pred CCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCC-CCCCCCCCCCCCCC
Q 008484 493 YNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGP-DQSVLPPPTDLPPC 564 (564)
Q Consensus 493 ~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~~~~c 564 (564)
||+.||++|||+.|+++||++|||++||||+|+|||||+.|...||.++|.|.++.+. .+++++||.+++.|
T Consensus 482 ~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 482 YNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred cccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999999876 78999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=6.5e-103 Score=829.52 Aligned_cols=506 Identities=28% Similarity=0.498 Sum_probs=406.9
Q ss_pred HHHHhccCcccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCC
Q 008484 19 LLLGLLSFPAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNG 98 (564)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~ 98 (564)
|+|+..+..+.+.+++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~ 94 (543)
T PLN02991 15 LLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNS 94 (543)
T ss_pred HHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCc
Confidence 33333344456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccC
Q 008484 99 WADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTD 177 (564)
Q Consensus 99 ~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~ 177 (564)
|+||+++ +||+|+||++|+|+|++++++||||||+|.+.|+ +||+|+|||++++..+.++..+++|++++++||++.+
T Consensus 95 ~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~ 173 (543)
T PLN02991 95 YQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTN 173 (543)
T ss_pred cccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCC
Confidence 9999998 9999999999999999866899999999999888 7999999999987666666667889999999999988
Q ss_pred HHHHHHhhhccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCc
Q 008484 178 VEEVEKQGQKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVY 257 (564)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~ 257 (564)
...+.... ..+.....++.++|||+.. .+.+++++||+|||||||++....+.|+|+||+|+|||+||.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~ 243 (543)
T PLN02991 174 HKDLRAQL-DNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTH 243 (543)
T ss_pred HHHHHHHh-hcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcc
Confidence 66554333 3344455789999999963 1579999999999999999999999999999999999999999
Q ss_pred ccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhh
Q 008484 258 TKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALN 337 (564)
Q Consensus 258 ~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~ 337 (564)
++|..++++.|++||||||+|++++++|+|||++...... .+....|||+|++.........|..|.... ...+
T Consensus 244 ~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~--~~~~ 317 (543)
T PLN02991 244 TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPIQLS--WSFD 317 (543)
T ss_pred ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCcccc--cccc
Confidence 9999999999999999999999999889999998753221 235678999999864322111222221111 1111
Q ss_pred hhhhcccCCCCCCCCCCCcC--------cceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhcccccc
Q 008484 338 YNKKLRSLNSPKFPADVPQK--------VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGV 409 (564)
Q Consensus 338 ~~~~~~~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~ 409 (564)
+.........+..+...|.. .++.+.+...+.. .+| ++.|++|+.+|..|++++|.++|.+++|.
T Consensus 318 ~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~~~iN~~s~~~p~~p~L~~~~~~~~g~ 390 (543)
T PLN02991 318 QARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGN------IEG-KQRYAVNSASFYPADTPLKLADYFKIAGV 390 (543)
T ss_pred chhhhhhcccCCCCCCCCCccccccccccceeEEEeecccc------cCc-eEEEEECCCccCCCCCChhhhhhhcccCc
Confidence 11001111112112222221 2222222221111 023 57899999999999999998877777787
Q ss_pred ccCC-CCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCC
Q 008484 410 FKAD-FPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVK 488 (564)
Q Consensus 410 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~ 488 (564)
+..+ ++..++.. .......++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.
T Consensus 391 ~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~- 454 (543)
T PLN02991 391 YNPGSIPDQPTNG------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA- 454 (543)
T ss_pred cccccccccCCCC------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-
Confidence 7654 44443321 0112356788999999999999964 56999999999999999999999875
Q ss_pred CCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008484 489 YPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 564 (564)
Q Consensus 489 ~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 564 (564)
....||+.||++|||+.||++||++|||++||||+|+|||||..|+..||..++.|.++.+..+++++||.++++|
T Consensus 455 ~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 455 SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.5e-102 Score=826.58 Aligned_cols=500 Identities=29% Similarity=0.481 Sum_probs=408.7
Q ss_pred cCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccc
Q 008484 29 EAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQ 108 (564)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~ 108 (564)
...+++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 55567999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred cccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhc
Q 008484 109 CPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQK 187 (564)
Q Consensus 109 ~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 187 (564)
|||+||++|+|+|++++++||||||+|...|+ .||+|+|||.+++..+.+++.++.|++++++||++.+...+.. ...
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-ILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-Hhh
Confidence 99999999999999866899999999999988 8999999999876555666667889999999999988655333 333
Q ss_pred cCC-CCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEE
Q 008484 188 MGL-PPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI 266 (564)
Q Consensus 188 ~g~-~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v 266 (564)
.+. .+..++.+||||+... ..+.+++++||+|||||+|++....+.|+|+||+|+|||+||++++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 333 2347899999999642 12679999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhhhhhhcccCC
Q 008484 267 LIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLN 346 (564)
Q Consensus 267 ~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~ 346 (564)
.|++||||||+|++++++|+|+|++.+...+ .+..+.|||+|++.....+ ..|..|.+.+......+...++.+.
T Consensus 244 ~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l 318 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNL 318 (536)
T ss_pred EEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhcc
Confidence 9999999999999999889999999864322 2356789999987644311 1233343444333322222233333
Q ss_pred CCCCCCCCCcCcc--------eEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhccccccccCC-CCCC
Q 008484 347 SPKFPADVPQKVD--------RKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-FPDK 417 (564)
Q Consensus 347 ~~~~p~~~p~~~d--------~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~-~~~~ 417 (564)
.++.+...|+..+ +++.+...+.. .+.++.|++|+.||..|++++|.+.+.+++|.+..+ |+..
T Consensus 319 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 319 TASGPRTNPQGSYHYGKMKISRTLILESSAAL-------VKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred CCCCCCCCCCcccccceeccceeEEecccccc-------cCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 3333334443322 22222211111 112578999999999999999988776777777653 6666
Q ss_pred CCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCC
Q 008484 418 PPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVD 497 (564)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~ 497 (564)
|+..++. ..++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ....||+.+
T Consensus 392 p~~~~~~-----------~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~n 456 (536)
T PLN02792 392 PRRGGGM-----------RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKD 456 (536)
T ss_pred CcccCCC-----------ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCC
Confidence 6543221 23477889999999999999964 56899999999999999999999874 456899999
Q ss_pred CCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008484 498 PIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 564 (564)
Q Consensus 498 p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 564 (564)
|++||||.|+++||++|||+|||||+|+||||+++|+..||..+|.|+++.+..+++++||.++++|
T Consensus 457 P~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 457 AISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999889999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.1e-101 Score=824.75 Aligned_cols=510 Identities=29% Similarity=0.495 Sum_probs=401.9
Q ss_pred HHHHHHHhccCcccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCC
Q 008484 16 FLFLLLGLLSFPAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQY 95 (564)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~ 95 (564)
.++.+.++.+..+.+.+++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~ 92 (539)
T PLN02835 13 VLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQR 92 (539)
T ss_pred HHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccC
Confidence 33334444444556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeeccc
Q 008484 96 RNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWW 174 (564)
Q Consensus 96 ~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~ 174 (564)
.++|+||+++ +||+|+||++|+|+|++++++||||||||...|+ .||+|+|||++++..+.++..+|+|++++++||+
T Consensus 93 ~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~ 171 (539)
T PLN02835 93 KNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWY 171 (539)
T ss_pred CCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccc
Confidence 9999999999 9999999999999999766899999999999998 8999999998765555566667999999999999
Q ss_pred ccCHHHHHHhhhccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeC
Q 008484 175 HTDVEEVEKQGQKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVD 254 (564)
Q Consensus 175 ~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~D 254 (564)
+.+...+... ...|.....++.++|||+.. +.+++++||+|||||||++....+.|+|+||+|+||++|
T Consensus 172 ~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~D 240 (539)
T PLN02835 172 KTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVE 240 (539)
T ss_pred cCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEEC
Confidence 9887664433 33444456789999999975 579999999999999999999999999999999999999
Q ss_pred CCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCC---C
Q 008484 255 AVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN---D 331 (564)
Q Consensus 255 G~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~---~ 331 (564)
|++++|..++.+.|++||||||+|++++++|+|+|++...... .+....|+|+|++.........|..|... +
T Consensus 241 G~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~ 316 (539)
T PLN02835 241 GSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSGELHWS 316 (539)
T ss_pred CccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCccccccc
Confidence 9999999999999999999999999999889999998642211 23567999999875432221223222211 0
Q ss_pred hhhhhhhhhhcccCCCCCCCCC---C-CcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhcccc
Q 008484 332 SEFALNYNKKLRSLNSPKFPAD---V-PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLK 407 (564)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~p~~---~-p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~ 407 (564)
......+...+.+....+.+.. . ....++++.+...... .+| ...|++|+++|..|++++|.+.+.+.+
T Consensus 317 ~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~w~iN~~s~~~p~~P~L~~~~~~~~ 389 (539)
T PLN02835 317 MRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL------ING-KQRYAVNGVSYVNSDTPLKLADYFGIP 389 (539)
T ss_pred cchhhccccccCccccCCCCCccccccccCCCceEEEeccccc------cCC-eEEEEECCcccCCCCCChhhhhhhcCC
Confidence 0000000011111111111100 0 0112334333221111 123 567999999999998888877665555
Q ss_pred ccccCCC-CCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCC
Q 008484 408 GVFKADF-PDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDP 486 (564)
Q Consensus 408 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~ 486 (564)
+.+..+. ...++ +.....++.++.+++|++|||+|+|.. ...||||||||+||||++|.|.|++
T Consensus 390 ~~~~~~~~~~~~~------------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~ 454 (539)
T PLN02835 390 GVFSVNSIQSLPS------------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTP 454 (539)
T ss_pred CccccCccccCCC------------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCc
Confidence 5554331 11111 111234578889999999999999964 6689999999999999999999986
Q ss_pred CCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008484 487 VKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 564 (564)
Q Consensus 487 ~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 564 (564)
.. ...+|+.+|++|||+.|+++||++|||+|||||.|+|||||++|+..||+.+|.|+++.+...++++||.++|+|
T Consensus 455 ~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 455 AK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred cc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 43 456789999999999999999999999999999999999999999999999999999988888999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.5e-101 Score=824.60 Aligned_cols=520 Identities=28% Similarity=0.467 Sum_probs=406.3
Q ss_pred hHHHHHHHHHhccCcccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCC
Q 008484 13 LTCFLFLLLGLLSFPAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGL 92 (564)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~ 92 (564)
++|+++.+.+... +.+.+++|+|+|++..+++||..+.+++|||++|||+|++++||+|+|+|+|+++++|+|||||+
T Consensus 10 ~~~~~~~~~~~~~--~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi 87 (552)
T PLN02354 10 LLCLAAAVALVVR--AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGI 87 (552)
T ss_pred HHHHHHHHHHhhh--ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccc
Confidence 4444444433322 24578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEee
Q 008484 93 KQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLG 171 (564)
Q Consensus 93 ~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~ 171 (564)
+|..++|+||+++ |||+|+||++|+|+|++.+++||||||+|...|+ +||+|+|||+++...+.+++.+++|++++++
T Consensus 88 ~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~ 166 (552)
T PLN02354 88 QQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIG 166 (552)
T ss_pred cCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEee
Confidence 9999999999999 9999999999999999866899999999999998 8999999999987666667667899999999
Q ss_pred cccccCHHHHHHhhhccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEE
Q 008484 172 EWWHTDVEEVEKQGQKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVV 251 (564)
Q Consensus 172 d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~vi 251 (564)
|||+.+...+.. ....+.....++.++|||+.+..+. ...+.+++++||+|||||||+++...+.|+|+||+|+||
T Consensus 167 Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI 242 (552)
T PLN02354 167 DWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV 242 (552)
T ss_pred eeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE
Confidence 999987655433 3344444456799999999753221 234789999999999999999999999999999999999
Q ss_pred eeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCC-
Q 008484 252 EVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASN- 330 (564)
Q Consensus 252 a~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~- 330 (564)
|+||++++|..++++.|++||||||+|++++++|+|+|++...... .+....|+|+|++......+..|..+.-.
T Consensus 243 a~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~ 318 (552)
T PLN02354 243 EMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPVGWA 318 (552)
T ss_pred EeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCcccc
Confidence 9999999999999999999999999999999889999998742221 24567999999886443222222222100
Q ss_pred -ChhhhhhhhhhcccCCCCCCCCCC----CcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhcc
Q 008484 331 -DSEFALNYNKKLRSLNSPKFPADV----PQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFN 405 (564)
Q Consensus 331 -~~~~~~~~~~~~~~l~~~~~p~~~----p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~ 405 (564)
.......+..++......+.+... ....++++.+...... .+| .+.|++|+++|..|++++|...+.+
T Consensus 319 ~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~~~iNn~s~~~p~~P~L~~~~~~ 391 (552)
T PLN02354 319 WSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------VDG-KLRYALNGVSHVDPETPLKLAEYFG 391 (552)
T ss_pred cchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc------CCc-eEEEEECCccCCCCCCChHHhhhhc
Confidence 000001111112111111111000 0112333333322111 023 5779999999999999988876554
Q ss_pred cc-ccccCC-CCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCC
Q 008484 406 LK-GVFKAD-FPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGN 483 (564)
Q Consensus 406 ~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~ 483 (564)
++ |.+..+ ++..+|..++ ....+..++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 392 ~~~g~~~~~~~~~~pp~~~~----------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~ 458 (552)
T PLN02354 392 VADKVFKYDTIKDNPPAKIT----------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGT 458 (552)
T ss_pred ccCCccccCccccCCccccC----------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCC
Confidence 43 554433 3333332111 0123467889999999999999964 5699999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCC
Q 008484 484 FDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPP 563 (564)
Q Consensus 484 ~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 563 (564)
|++.. ...+|+.+|++|||+.||++||++|||++||||+|+|||||+.|+..||.+.|.|.++.+..++++.+|.+.+.
T Consensus 459 ~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~ 537 (552)
T PLN02354 459 WTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALL 537 (552)
T ss_pred CCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccc
Confidence 98653 56789999999999999999999999999999999999999999999999999999998888889899999999
Q ss_pred C
Q 008484 564 C 564 (564)
Q Consensus 564 c 564 (564)
|
T Consensus 538 C 538 (552)
T PLN02354 538 C 538 (552)
T ss_pred c
Confidence 9
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.9e-100 Score=807.27 Aligned_cols=499 Identities=30% Similarity=0.479 Sum_probs=392.3
Q ss_pred cCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccc
Q 008484 29 EAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQ 108 (564)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~ 108 (564)
.+.+++|+|+|++..+++||..+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++ +|
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhc
Q 008484 109 CPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQK 187 (564)
Q Consensus 109 ~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 187 (564)
|+|+||++|+|+|++++++||||||||.+.|+ +||+|+|||++++....++..+++|+.++++||++.+...+... ..
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRAS-LD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhh-hh
Confidence 99999999999999866899999999999998 89999999999877666666778999999999999875443322 22
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEE
Q 008484 188 MGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAIL 267 (564)
Q Consensus 188 ~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~ 267 (564)
.+.....++.++|||+.. ..+.+++++||+|||||+|+++...+.|+|+||+|+||++||.+++|..+++|.
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333345679999999963 126899999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEEeCCCC-c---eeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhhhhhhcc
Q 008484 268 IAPGQTTNVLVQANQKP-G---RYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLR 343 (564)
Q Consensus 268 l~pg~r~dv~v~~~~~p-g---~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 343 (564)
|++||||||+|++++.+ | +|+|++.....+ ....+.|+|+|++....+....+..|...+.....+...+++
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~ 328 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIR 328 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhh
Confidence 99999999999998654 4 799999863322 235678999998754432212333333333322212211222
Q ss_pred cCCCCCCCCCCCcC--------cceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhccccccccCC-C
Q 008484 344 SLNSPKFPADVPQK--------VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKAD-F 414 (564)
Q Consensus 344 ~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~-~ 414 (564)
....+..+...|.. .+.++.+.... .. .+| .+.|++||.+|..|++++|...+.++++....+ +
T Consensus 329 ~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~----~~g-~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~ 401 (545)
T PLN02168 329 MDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--ML----SSG-KLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMF 401 (545)
T ss_pred hcCCCCCCCCCCcccccccccccceeEEecccc--cc----cCc-eEEEEECCCccCCCCCchhhhhhcccccccccCCC
Confidence 11122111122211 22222222111 00 123 578999999999999988876554444333322 4
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCC
Q 008484 415 PDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYN 494 (564)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~ 494 (564)
+..|+.. ....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|
T Consensus 402 ~~~p~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~N 465 (545)
T PLN02168 402 PVYPSNK------------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYN 465 (545)
T ss_pred ccCCCcC------------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCC
Confidence 4433310 0112467789999999999999964 569999999999999999999998653 45789
Q ss_pred CCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCC------CCCCCCCCCCCCCCC
Q 008484 495 LVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPG------PDQSVLPPPTDLPPC 564 (564)
Q Consensus 495 ~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~------~~~~~~~~p~~~~~c 564 (564)
+.||++|||+.||++||++|||+|||||.|+|||||++|...||.+.+.|+++.. ..++++.||.++++|
T Consensus 466 l~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 466 LVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 9999999999999999999999999999999999999999999999998864433 246788999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-99 Score=798.46 Aligned_cols=524 Identities=50% Similarity=0.904 Sum_probs=463.7
Q ss_pred cccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCc
Q 008484 27 PAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYI 106 (564)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~ 106 (564)
.+.++.+.++|++++..+.++|..++++++||++|||+|+|++||+|.|+|.|.++++++|||||++|..++|+|| +.+
T Consensus 23 ~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~~ 101 (563)
T KOG1263|consen 23 QAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VYI 101 (563)
T ss_pred hhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-Ccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeeccccc-CHHHHHHh
Q 008484 107 TQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHT-DVEEVEKQ 184 (564)
Q Consensus 107 ~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~~~ 184 (564)
|||||+||++|+|+|++++|.||||||+|...++ .|++|+|||.++...+.|++.+++|++++++|||.+ +...+...
T Consensus 102 TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~ 181 (563)
T KOG1263|consen 102 TQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNF 181 (563)
T ss_pred ccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHh
Confidence 9999999999999999988999999999999999 899999999999988888888999999999999996 66666666
Q ss_pred hhccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEec
Q 008484 185 GQKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTE 264 (564)
Q Consensus 185 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d 264 (564)
....+..+..+|..+|||+.+..++| .+.+++++||+|||||+|+|....+.|+|+||+|+||++||.+++|..++
T Consensus 182 ~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~ 257 (563)
T KOG1263|consen 182 LDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTD 257 (563)
T ss_pred hccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeec
Confidence 66666666668999999999988999 58999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEEEeCCCCceeEEEEeecCCCC-CCCCCCceEEEEEEccCCCCC---CCCCCCCCCCCChhhhhhhhh
Q 008484 265 AILIAPGQTTNVLVQANQKPGRYFMAARPFNDAP-IPVDNKTATGILQYKGIPNSL---LPTLAQLPASNDSEFALNYNK 340 (564)
Q Consensus 265 ~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~ 340 (564)
++.|.||||++|++++++.+++|+|.+.++.++. ..+ +....++++|.+..... .+..+..|...+..++..+.+
T Consensus 258 ~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~ 336 (563)
T KOG1263|consen 258 SLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQAR 336 (563)
T ss_pred eEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhh
Confidence 9999999999999999999999999999876653 233 77899999999833221 123344566666667777777
Q ss_pred hcccCCCCCCCCCCCcCcceEEEEEEccCCCCCCcc-cCCceeeeeecceeeecCcchh-hhhhhccccccccCCCCCCC
Q 008484 341 KLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTC-VNGTRLLATLNNISFVMPQTAL-LQAHYFNLKGVFKADFPDKP 418 (564)
Q Consensus 341 ~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~-~~g~~~~~~~n~~s~~~p~~~~-l~~~~~~~~g~~~~~~~~~~ 418 (564)
.++.+....++...|...++.....++.+...+... .++.++.+++|+.||+.|+.+. |..++...++.+..+|+..|
T Consensus 337 ~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P 416 (563)
T KOG1263|consen 337 SIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKP 416 (563)
T ss_pred cccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCC
Confidence 888887777888888888877666666655444332 2456888999999999999854 55666777788888899988
Q ss_pred CCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCC-CCCCCCC
Q 008484 419 PKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYP-ANYNLVD 497 (564)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~-~~~~~~~ 497 (564)
+..+++.+ .+.++.++.+++++.|||+++|.+......|||||||+.||||+.|.|.|++.++. ..||+.+
T Consensus 417 ~~~~~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~d 488 (563)
T KOG1263|consen 417 PIKFDYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVD 488 (563)
T ss_pred ccccCCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCC
Confidence 77777665 24678999999999999999998866677899999999999999999999995455 7899999
Q ss_pred CCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008484 498 PIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLPPC 564 (564)
Q Consensus 498 p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 564 (564)
|+.||||.||||||++|||.|||||+|+||||+++|...||.++|.|.++.+..+++.+||.+.++|
T Consensus 489 p~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 489 PVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred CcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=5.6e-95 Score=781.91 Aligned_cols=514 Identities=35% Similarity=0.604 Sum_probs=393.2
Q ss_pred cccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCC-CCCceeeeCCCCCCCCCCCCCCCC
Q 008484 27 PAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHA-QYNMSIHWHGLKQYRNGWADGPAY 105 (564)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~ 105 (564)
.+.+++++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+.+|+||+++
T Consensus 19 ~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~ 98 (566)
T PLN02604 19 AAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98 (566)
T ss_pred hccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCc
Confidence 4467899999999999999999999999999999999999999999999999998 589999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHh
Q 008484 106 ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQ 184 (564)
Q Consensus 106 ~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 184 (564)
++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.++..++ .++.|.+|+++||++.+..+....
T Consensus 99 ~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~ 176 (566)
T PLN02604 99 VTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALG 176 (566)
T ss_pred cccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHh
Confidence 999999999999999998 7999999999999888 8999999999887655555 368899999999999887654443
Q ss_pred hhccC-CCCCCCceEEEcCcCCCCCCCCC-----------------CCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCc
Q 008484 185 GQKMG-LPPNMSDAHTINGKPGPLFPCSE-----------------KHTFAMEVESGKTYLLRIINAALNDELFFAIAGH 246 (564)
Q Consensus 185 ~~~~g-~~~~~~~~~~iNG~~~~~~~~~~-----------------~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh 246 (564)
..... ....+++..+|||++. +.|+. ...+.+++++||+|||||||+++...+.|+|+||
T Consensus 177 ~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH 254 (566)
T PLN02604 177 LSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGH 254 (566)
T ss_pred hccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCC
Confidence 32211 1123579999999864 44531 1335789999999999999999999999999999
Q ss_pred eeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCc-eeEEEEeecCCCCCCCCCCceEEEEEEccCCCC-CCCCC-
Q 008484 247 NFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPG-RYFMAARPFNDAPIPVDNKTATGILQYKGIPNS-LLPTL- 323 (564)
Q Consensus 247 ~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg-~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~-~~~~~- 323 (564)
+|+|||+||.+++|++++.|.|++||||||+|++++++| +|||++.....+ .+...+.|||+|++.... +++..
T Consensus 255 ~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~---~~~~~~~aIL~Y~~~~~~~~~~~~~ 331 (566)
T PLN02604 255 NMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRN---NTTPPGLAIFNYYPNHPRRSPPTVP 331 (566)
T ss_pred EEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCC---CCCcceeEEEEECCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999775 899998653322 123567999999864321 11111
Q ss_pred CCCCCCCChhhhhhhhhhcccCCCCCCCCCCCcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhh
Q 008484 324 AQLPASNDSEFALNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHY 403 (564)
Q Consensus 324 p~~p~~~~~~~~~~~~~~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~ 403 (564)
+..+.+.+.....+....+..+. ..+...+...++++.+...... .+..+.|++|+++|..|..++|...+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~w~in~~~~~~p~~p~L~~~~ 402 (566)
T PLN02604 332 PSGPLWNDVEPRLNQSLAIKARH--GYIHPPPLTSDRVIVLLNTQNE-------VNGYRRWSVNNVSFNLPHTPYLIALK 402 (566)
T ss_pred CCCCcccccchhhcchhcccccc--cCcCCCCCCCCeEEEEeccccc-------cCCeEEEEECcccCCCCCCchhHhhh
Confidence 11222222211111111111111 1111233445666654332211 11256799999999988888887765
Q ss_pred ccccccccCCCCCCCCCCCC---CCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeeecCCceEEE
Q 008484 404 FNLKGVFKADFPDKPPKPFN---YTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVV 477 (564)
Q Consensus 404 ~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~HlHG~~F~Vv 477 (564)
...++.++.+. ++..+. ++......+...+.+..++.++.|++||++|+|.... ....||||||||+||||
T Consensus 403 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vl 479 (566)
T PLN02604 403 ENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVL 479 (566)
T ss_pred hcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEE
Confidence 55555543221 111111 0000000111123457788999999999999997422 25689999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCC
Q 008484 478 GTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPP 557 (564)
Q Consensus 478 ~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~ 557 (564)
++|.|.|++.+....+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. ..+++.+
T Consensus 480 g~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-----~~~~~~~ 554 (566)
T PLN02604 480 GYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-----IERVGKL 554 (566)
T ss_pred EecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-----hhhccCC
Confidence 99999998766566889999999999999999999999999999999999999999999999999653 2357778
Q ss_pred CCCCCCC
Q 008484 558 PTDLPPC 564 (564)
Q Consensus 558 p~~~~~c 564 (564)
|.+++.|
T Consensus 555 p~~~~~C 561 (566)
T PLN02604 555 PSSIMGC 561 (566)
T ss_pred CCCcCcc
Confidence 8899999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.8e-95 Score=779.68 Aligned_cols=514 Identities=34% Similarity=0.600 Sum_probs=384.4
Q ss_pred CcccCceEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCC-CCceeeeCCCCCCCCCCCCCCC
Q 008484 26 FPAEAAIKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQ-YNMSIHWHGLKQYRNGWADGPA 104 (564)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~ 104 (564)
..+.+++++|+|++++..+++||..+.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++.+++|+||++
T Consensus 17 ~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~ 96 (574)
T PLN02191 17 HTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA 96 (574)
T ss_pred HhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC
Confidence 334578999999999999999999999999999999999999999999999999997 7899999999999999999999
Q ss_pred CccccccCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHH
Q 008484 105 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEK 183 (564)
Q Consensus 105 ~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~ 183 (564)
+++||+|+||++++|+|++ .++||||||||...|. +||+|+|||+++.+...++ .+|+|++|+++||++........
T Consensus 97 gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~ 174 (574)
T PLN02191 97 GVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQEL 174 (574)
T ss_pred ccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHH
Confidence 9999999999999999998 7899999999999998 8999999999765433233 46899999999999986543322
Q ss_pred hhhcc-CCCCCCCceEEEcCcCCCCCCCCC--------------------CCeeeEEEecCcEEEEEEEecCCCCeEEEE
Q 008484 184 QGQKM-GLPPNMSDAHTINGKPGPLFPCSE--------------------KHTFAMEVESGKTYLLRIINAALNDELFFA 242 (564)
Q Consensus 184 ~~~~~-g~~~~~~~~~~iNG~~~~~~~~~~--------------------~~~~~l~~~~G~~~rlriiN~~~~~~~~~~ 242 (564)
..... .....++++++|||+.. +.|.. .....+++++||+|||||||+++...+.|+
T Consensus 175 ~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~ 252 (574)
T PLN02191 175 GLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLA 252 (574)
T ss_pred hhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEE
Confidence 22111 11224578999999864 34421 112369999999999999999999999999
Q ss_pred EcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCC-ceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCC
Q 008484 243 IAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLP 321 (564)
Q Consensus 243 l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~p-g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~ 321 (564)
|+||+|+|||+||++++|+++++|.|++||||||+|++++++ ++||||+.....+. ......|||+|.+......+
T Consensus 253 idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p 329 (574)
T PLN02191 253 VQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLP 329 (574)
T ss_pred ECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCC
Confidence 999999999999999999999999999999999999999976 58999997533221 12234699999875443211
Q ss_pred C--CCCCCCCCChhhhhhhhhhcccCCCCCCCCCCCcC-cceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchh
Q 008484 322 T--LAQLPASNDSEFALNYNKKLRSLNSPKFPADVPQK-VDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTAL 398 (564)
Q Consensus 322 ~--~p~~p~~~~~~~~~~~~~~~~~l~~~~~p~~~p~~-~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~ 398 (564)
. .+..|.+.+......+...+ +.....+ ..|.. .+.++.+.... . ..+ ...|++|+.+|..|+.++
T Consensus 330 ~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~-~------~~~-~~~~~~n~~s~~~p~~P~ 398 (574)
T PLN02191 330 SSPPPVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQN-L------IDG-YTKWAINNVSLVTPATPY 398 (574)
T ss_pred CCCCCCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccc-e------eCC-eEEEEECcccCcCCCcch
Confidence 1 11223333322111111111 1110011 12222 34444332111 0 022 457999999999898888
Q ss_pred hhhhhccccccccCCCCCCC-CCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeeecCCce
Q 008484 399 LQAHYFNLKGVFKADFPDKP-PKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNF 474 (564)
Q Consensus 399 l~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~HlHG~~F 474 (564)
|...+.+.++.+..+.+... +..|+..+. ......+.+..++.+++|++|||+|+|.... ....||||||||+|
T Consensus 399 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F 476 (574)
T PLN02191 399 LGSVKYNLKLGFNRKSPPRSYRMDYDIMNP--PPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDF 476 (574)
T ss_pred HHHHhhccCcccccCCCcccccccccccCC--CccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCe
Confidence 77755444444443322211 111111111 0001123456788999999999999996421 26789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCC
Q 008484 475 FVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSV 554 (564)
Q Consensus 475 ~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~ 554 (564)
|||++|.|.|++......+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.. +. +++
T Consensus 477 ~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e--~~---~~~ 551 (574)
T PLN02191 477 WVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE--GL---NRI 551 (574)
T ss_pred EEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec--Ch---hhc
Confidence 9999999999875444578999999999999999999999999999999999999999999999999953 22 234
Q ss_pred CCCCCCCCCC
Q 008484 555 LPPPTDLPPC 564 (564)
Q Consensus 555 ~~~p~~~~~c 564 (564)
+.+|.+++.|
T Consensus 552 ~~~p~~~~~C 561 (574)
T PLN02191 552 GKIPDEALGC 561 (574)
T ss_pred cCCCcchhhh
Confidence 5578888988
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.8e-94 Score=776.10 Aligned_cols=509 Identities=34% Similarity=0.598 Sum_probs=388.2
Q ss_pred eEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCC-CCceeeeCCCCCCCCCCCCCCCCccccc
Q 008484 32 IKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQ-YNMSIHWHGLKQYRNGWADGPAYITQCP 110 (564)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~~~~~ 110 (564)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999985 7899999999999999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhccC
Q 008484 111 IKTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQKMG 189 (564)
Q Consensus 111 i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 189 (564)
|+||++++|+|++ .++||||||||...|. +||+|+|||+++..+..++ .+|+|++|+++||++....+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999999888 8999999999986544444 36899999999999987655433322211
Q ss_pred -CCCCCCceEEEcCcCCCCCCCCCC-------------------CeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeE
Q 008484 190 -LPPNMSDAHTINGKPGPLFPCSEK-------------------HTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFT 249 (564)
Q Consensus 190 -~~~~~~~~~~iNG~~~~~~~~~~~-------------------~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~ 249 (564)
....+++.++|||+.. +.|... ....+++++|++|||||||+++...+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1123568999999864 334211 124589999999999999999999999999999999
Q ss_pred EEeeCCCcccceEecEEEECCCceEEEEEEeCCCC-ceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCC--CCCCC
Q 008484 250 VVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKP-GRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLP--TLAQL 326 (564)
Q Consensus 250 via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~p-g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~p~~ 326 (564)
|||+||++++|++++.+.|++||||||+|++++.+ |+|||++...... .......|||+|.+......+ +.+..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~ 313 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVT 313 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999876 4899998754321 123457899999875432211 11223
Q ss_pred CCCCChhhhhhhhhhcccCCCCCCCCCCCcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhccc
Q 008484 327 PASNDSEFALNYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNL 406 (564)
Q Consensus 327 p~~~~~~~~~~~~~~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~ 406 (564)
|.+.+........ +..+.... ....|..+++++++...... ....+.|++|+.+|..|..++|...+.++
T Consensus 314 p~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~ 383 (541)
T TIGR03388 314 PAWDDFDRSKAFS--LAIKAAMG-SPKPPETSDRRIVLLNTQNK-------INGYTKWAINNVSLTLPHTPYLGSLKYNL 383 (541)
T ss_pred CCccccchhhccc--hhhhcccc-CCCCCCCCCcEEEEeccCcc-------cCceEEEEECcccCCCCCccHHHHHhhcC
Confidence 3333321111111 11111101 11233445666654332211 11246799999999988888887655444
Q ss_pred cccccCCCC-CCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeeecCCceEEEeecCC
Q 008484 407 KGVFKADFP-DKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGTGIG 482 (564)
Q Consensus 407 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~HlHG~~F~Vv~~g~g 482 (564)
.+.++.+.+ ...+..|+... .+.....+.++.++.++.|++|||+|+|.... ....||||||||+||||++|.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g 461 (541)
T TIGR03388 384 LNAFDQKPPPENYPRDYDIFK--PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEG 461 (541)
T ss_pred CccccCCCCcccccccccccC--CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccC
Confidence 343332211 01111111100 11112234567888999999999999996421 2568999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCCCCCCCCCCCCCCC
Q 008484 483 NFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPGPDQSVLPPPTDLP 562 (564)
Q Consensus 483 ~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~ 562 (564)
.|+.......+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. .++++.+|.+++
T Consensus 462 ~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~~ 536 (541)
T TIGR03388 462 KFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEAL 536 (541)
T ss_pred CCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCcccc
Confidence 998654455789999999999999999999999999999999999999999999999999643 245677999999
Q ss_pred CC
Q 008484 563 PC 564 (564)
Q Consensus 563 ~c 564 (564)
.|
T Consensus 537 ~C 538 (541)
T TIGR03388 537 GC 538 (541)
T ss_pred CC
Confidence 99
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.5e-91 Score=748.12 Aligned_cols=489 Identities=28% Similarity=0.493 Sum_probs=372.3
Q ss_pred EEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCC-CCceeeeCCCCCCCCCCCCCCCCcccccc
Q 008484 33 KKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQ-YNMSIHWHGLKQYRNGWADGPAYITQCPI 111 (564)
Q Consensus 33 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~~~~~i 111 (564)
-.|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++..++|+||++++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCCcceeEecchhhhhcceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhccCC
Q 008484 112 KTGNSYTYDFNVT-GQRGTLWWHAHIFWLRATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQKMGL 190 (564)
Q Consensus 112 ~PG~~~~y~~~~~-~~~Gt~wYH~h~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 190 (564)
+||++|+|+|+++ +++||||||||...|+.||+|+|||+++...++ .+|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999983 589999999999999888999999998764433 358899999999999887765544332221
Q ss_pred -CCCCCceEEEcCcCCCCCCCC-------CCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCce-eEEEeeCCCcccce
Q 008484 191 -PPNMSDAHTINGKPGPLFPCS-------EKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHN-FTVVEVDAVYTKPF 261 (564)
Q Consensus 191 -~~~~~~~~~iNG~~~~~~~~~-------~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~-~~via~DG~~~~p~ 261 (564)
...++++++|||+..+.. |. ....+.+++++||+|||||||+++...+.|+|+||+ |+|||+||++++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 123568999999975331 10 112478999999999999999999999999999999 99999999999999
Q ss_pred EecEEEECCCceEEEEEEeCCC-------CceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhh
Q 008484 262 TTEAILIAPGQTTNVLVQANQK-------PGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEF 334 (564)
Q Consensus 262 ~~d~v~l~pg~r~dv~v~~~~~-------pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~ 334 (564)
.++++.|++||||||+|++++. +|+|||++.....+ +.....|||+|++....+.+..+..+.......
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~ 320 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNS 320 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCc
Confidence 9999999999999999999985 38999998753321 234578999998654333322222222111000
Q ss_pred hhhh-hhhcccCCCCCCC-CCCCcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeec--Ccchhhhhhhccccccc
Q 008484 335 ALNY-NKKLRSLNSPKFP-ADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVM--PQTALLQAHYFNLKGVF 410 (564)
Q Consensus 335 ~~~~-~~~~~~l~~~~~p-~~~p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~--p~~~~l~~~~~~~~g~~ 410 (564)
...+ ...+.++.....+ ...+..+++++.+...+.... ....+.|++|+.+|.. |+.|+|...+.+. .
T Consensus 321 ~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-----~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~ 392 (538)
T TIGR03390 321 TYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-----LNGRVAWLQNGLSWTESVRQTPYLVDIYENG---L 392 (538)
T ss_pred chhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-----cCCeEEEEECCcccCCCCCCCchHHHHhcCC---C
Confidence 0001 1123333221111 011344677776666543211 1135779999999975 6777776543221 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC-----CCCCCCeeecCCceEEEeecCCCCC
Q 008484 411 KADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLL-----TVESHPFHLHGYNFFVVGTGIGNFD 485 (564)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~-----~~~~HP~HlHG~~F~Vv~~g~g~~~ 485 (564)
+..++ ++ .. ...........++.++.|++|||+|+|.... ....||||||||+||||++|.|.|+
T Consensus 393 ----~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~ 462 (538)
T TIGR03390 393 ----PATPN--YT--AA--LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYN 462 (538)
T ss_pred ----CcCCC--cc--cc--cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccC
Confidence 11110 11 00 0000112245678899999999999996411 2579999999999999999999998
Q ss_pred CCCCCCCCCCCCCCcceeeEec----------CCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecC
Q 008484 486 PVKYPANYNLVDPIERNTAAVP----------TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 547 (564)
Q Consensus 486 ~~~~~~~~~~~~p~~rDTv~vp----------~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 547 (564)
+......+++.+|++|||+.|| ++||++|||++||||.|+|||||+||+..||+++|.|.+-
T Consensus 463 ~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 463 ATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred CccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 7554456889999999999996 7899999999999999999999999999999999998653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.8e-75 Score=625.33 Aligned_cols=422 Identities=27% Similarity=0.461 Sum_probs=313.6
Q ss_pred eEEEEEEEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCcccccc
Q 008484 32 IKKYQFDVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPI 111 (564)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i 111 (564)
.++|+|++++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++... +||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCccccccc
Confidence 479999999999999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred CCCCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhh----
Q 008484 112 KTGNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQ---- 186 (564)
Q Consensus 112 ~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~---- 186 (564)
+||++++|+|++ .++||||||||...|. .||+|+|||++++.++. .+|+|++|+++||++.+..+++....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 7899999999998888 89999999998755443 35899999999999876655433211
Q ss_pred -----------------ccCCC---------------C-------CCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEE
Q 008484 187 -----------------KMGLP---------------P-------NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYL 227 (564)
Q Consensus 187 -----------------~~g~~---------------~-------~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~r 227 (564)
..|.. + .....++|||+.. ...+++.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEE
Confidence 01100 0 0012378999853 234678999999999
Q ss_pred EEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceE
Q 008484 228 LRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTAT 307 (564)
Q Consensus 228 lriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ 307 (564)
|||||+++.+.+.|+|+||+|+||++||++++|..++++.|++||||||+|++++ .|.|.|.+..... .....
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~------~~~~~ 344 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDR------TGYAR 344 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCC------CceEE
Confidence 9999999999999999999999999999999999999999999999999999876 5899999864321 23467
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCChhhhh------------hh------hhh-------------c--------------
Q 008484 308 GILQYKGIPNSLLPTLAQLPASNDSEFAL------------NY------NKK-------------L-------------- 342 (564)
Q Consensus 308 ail~y~~~~~~~~~~~p~~p~~~~~~~~~------------~~------~~~-------------~-------------- 342 (564)
++|++.+....+.+.++..|...-..... .+ ... +
T Consensus 345 ~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (587)
T TIGR01480 345 GTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPL 424 (587)
T ss_pred EEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccC
Confidence 77887653222222221111100000000 00 000 0
Q ss_pred --------------------------------ccCCCCCCCCCCCcCcceEEEEEEccCCCCCCcccCCceeeeeeccee
Q 008484 343 --------------------------------RSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNIS 390 (564)
Q Consensus 343 --------------------------------~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s 390 (564)
..|. ...+...+..+++++.+.+.- +..++.|++|++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~-~~~~~~~~~~p~r~~~~~L~g---------~m~~~~wtiNG~~ 494 (587)
T TIGR01480 425 NPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLH-SLFPPPDGRAPGREIELHLTG---------NMERFAWSFDGEA 494 (587)
T ss_pred CccccccccCcccccCCCCcccccCCcceeehhhcc-ccccccCcCCCCceEEEEEcC---------CCceeEEEECCcc
Confidence 0000 000000000112222111100 1123344555432
Q ss_pred eecCcchhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeec
Q 008484 391 FVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLH 470 (564)
Q Consensus 391 ~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlH 470 (564)
| .....+.++.|++|+|.|.|.+ .+.||||+|
T Consensus 495 ~---------------------------------------------~~~~pl~v~~Gervri~l~N~t---~~~HpmHlH 526 (587)
T TIGR01480 495 F---------------------------------------------GLKTPLRFNYGERLRVVLVNDT---MMAHPIHLH 526 (587)
T ss_pred C---------------------------------------------CCCCceEecCCCEEEEEEECCC---CCCcceeEc
Confidence 2 0123456899999999999975 789999999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEe
Q 008484 471 GYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 471 G~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
|+.|+++..+ |. .+.++||+.|+|++.+.++|++||||.|+||||++.|++.|||..|+|.
T Consensus 527 G~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 527 GMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999998653 21 2457899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=6.4e-72 Score=594.11 Aligned_cols=423 Identities=20% Similarity=0.270 Sum_probs=296.0
Q ss_pred eEEEEEEEEEEEeecCCce-eeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccc
Q 008484 32 IKKYQFDVQVKNVSRLCHA-KPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCP 110 (564)
Q Consensus 32 ~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~ 110 (564)
...|+|++++...++++.. ..+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 3468999999999997644 46999999999999999999999999999999999999999999876 99986 899
Q ss_pred cCCCCeEEEEEEeCCCCcceeEecchh----hhh-cceeeeEEEeCCCCCCCCCCC--CCCcEEEEeecccccCHHHHHH
Q 008484 111 IKTGNSYTYDFNVTGQRGTLWWHAHIF----WLR-ATVYGAIVIMPKPGSPFPFPQ--PNREEVILLGEWWHTDVEEVEK 183 (564)
Q Consensus 111 i~PG~~~~y~~~~~~~~Gt~wYH~h~~----~~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 183 (564)
|.||++++|+|++++++||||||+|.+ .|. .||+|+|||+++.+...+++. ...|++++++||+.....+...
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999955689999999974 444 799999999998765433432 3458999999998865443221
Q ss_pred hhhc-cCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEE-cCceeEEEeeCCCcc-cc
Q 008484 184 QGQK-MGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KP 260 (564)
Q Consensus 184 ~~~~-~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l-~gh~~~via~DG~~~-~p 260 (564)
.... .......++.++|||+.+ |.+.++ +++|||||+|+++.+.+.|++ ++|+|+|||.||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 1110 111234678999999976 556664 679999999999999999998 899999999999987 89
Q ss_pred eEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCC-CCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhhhh
Q 008484 261 FTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPI-PVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYN 339 (564)
Q Consensus 261 ~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 339 (564)
..+++|.|+|||||||+|++++ .+.|.+.......... .........++++..........+ |.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---P~----------- 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTL---PD----------- 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcC---Ch-----------
Confidence 9999999999999999999998 5889998764432110 000011234555543221111111 11
Q ss_pred hhcccCCCCCCCCCCCcCcceEEEEEEccCCC---------CCC--------------cccC-------------Ccee-
Q 008484 340 KKLRSLNSPKFPADVPQKVDRKLFYTIGFGKD---------SCP--------------TCVN-------------GTRL- 382 (564)
Q Consensus 340 ~~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~~---------~~~--------------~~~~-------------g~~~- 382 (564)
.+..+. +.+.. .....+++.+....... ... +... +..+
T Consensus 334 -~l~~~~--~~~~~-~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 334 -SLASLP--ALPSL-EGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred -hhccCC--CCCcc-cccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 011110 00000 00012333332210000 000 0000 0000
Q ss_pred ---eeeecceeeecCcchhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCC
Q 008484 383 ---LATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNL 459 (564)
Q Consensus 383 ---~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~ 459 (564)
.|+|||++|. .......++.|++++|.|.|.+
T Consensus 410 ~~~~~~ING~~~~--------------------------------------------~~~~~~~~~~G~~e~w~i~N~~- 444 (523)
T PRK10965 410 FHHANKINGKAFD--------------------------------------------MNKPMFAAKKGQYERWVISGVG- 444 (523)
T ss_pred ccccccCCCeECC--------------------------------------------CCCcceecCCCCEEEEEEEeCC-
Confidence 0123332221 1123356899999999999965
Q ss_pred CCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEe----cCceeeEEEeechhchh
Q 008484 460 LTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA----DNPGVWFMHCHLELHTG 535 (564)
Q Consensus 460 ~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a----dnpG~wl~HCHil~H~d 535 (564)
..+.|||||||++|||++++.. ......+.|||||.|++ +.+.|++++ +++|.||||||||+|||
T Consensus 445 -~~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 445 -DMMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred -CCCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 2368999999999999998521 11223468999999988 666666655 46789999999999999
Q ss_pred cccEEEEEEe
Q 008484 536 WGLKTAFAVE 545 (564)
Q Consensus 536 ~GM~~~~~V~ 545 (564)
.|||+.|.|.
T Consensus 514 ~GMM~~~~V~ 523 (523)
T PRK10965 514 TGMMLGFTVS 523 (523)
T ss_pred cCccceeEeC
Confidence 9999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=5.9e-71 Score=582.05 Aligned_cols=402 Identities=18% Similarity=0.187 Sum_probs=290.3
Q ss_pred EEEEEEEEEEeecC-CceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccC
Q 008484 34 KYQFDVQVKNVSRL-CHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIK 112 (564)
Q Consensus 34 ~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~ 112 (564)
.++|+++...+..+ |....+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 37999999999987 46789999999999999999999999999999999999999999999876 467764 6899
Q ss_pred CCCeEEEEEEeCCCCcceeEecchhh----hh-cceeeeEEEeCCCCCCCCCCC--CCCcEEEEeecccccCHHHHHHhh
Q 008484 113 TGNSYTYDFNVTGQRGTLWWHAHIFW----LR-ATVYGAIVIMPKPGSPFPFPQ--PNREEVILLGEWWHTDVEEVEKQG 185 (564)
Q Consensus 113 PG~~~~y~~~~~~~~Gt~wYH~h~~~----~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 185 (564)
||++++|+|++++++||||||+|.++ |. .||+|+|||+++.+...+++. ...|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999876 33 799999999998765444432 23489999999987654322111
Q ss_pred hccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEE-cCceeEEEeeCCCcc-cceEe
Q 008484 186 QKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAI-AGHNFTVVEVDAVYT-KPFTT 263 (564)
Q Consensus 186 ~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~ 263 (564)
........++.++|||+.+ +.+++++ ++|||||+|+++.+.+.|+| ++|+|+|||.||+.+ +|..+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111234678999999976 6789987 48999999999999999999 899999999998876 89999
Q ss_pred cEEEECCCceEEEEEEeCCCCceeEEEEeecCCCC----CCCCCC---ceEEEEEEccCCCCCCCCCCCCCCCCChhhhh
Q 008484 264 EAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAP----IPVDNK---TATGILQYKGIPNSLLPTLAQLPASNDSEFAL 336 (564)
Q Consensus 264 d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~----~~~~~~---~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~ 336 (564)
+.+.|+|||||||+|++++ .+.+.|++....... ..+... ....+++........... ...|.
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~-------- 338 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVT-DNLPM-------- 338 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccCCC-CcCCh--------
Confidence 9999999999999999987 467777663211000 000000 011222222110000000 00000
Q ss_pred hhhhhcccCCCCCCCCCCCcCcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhccccccccCCCCC
Q 008484 337 NYNKKLRSLNSPKFPADVPQKVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPD 416 (564)
Q Consensus 337 ~~~~~~~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~~~~ 416 (564)
.+ .... ..+....+++.+.++. . .|.+||++|...
T Consensus 339 ----~l---~~~~---~~~~~~~~~~~~~l~~-----------~--~~~INg~~~~~~---------------------- 373 (471)
T PRK10883 339 ----RL---LPDE---IMEGSPIRSREISLGD-----------D--LPGINGALWDMN---------------------- 373 (471)
T ss_pred ----hh---cCCC---CCCCCCcceEEEEecC-----------C--cCccCCcccCCC----------------------
Confidence 01 0000 0111123333322211 1 146787765221
Q ss_pred CCCCCCCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCC
Q 008484 417 KPPKPFNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLV 496 (564)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~ 496 (564)
.....++.|++++|.+.| .+.|||||||+.|||++++... ....
T Consensus 374 ----------------------~~~~~~~~g~~e~W~~~n-----~~~HP~HlHg~~FqVl~~~G~~---------~~~~ 417 (471)
T PRK10883 374 ----------------------RIDVTAQQGTWERWTVRA-----DMPQAFHIEGVMFLIRNVNGAM---------PFPE 417 (471)
T ss_pred ----------------------cceeecCCCCEEEEEEEC-----CCCcCEeECCccEEEEEecCCC---------CCcc
Confidence 112456899999999987 3689999999999999995221 1112
Q ss_pred CCCcceeeEecCCCEEEEEEEecCce----eeEEEeechhchhcccEEEEEEec
Q 008484 497 DPIERNTAAVPTGGWTAIRFRADNPG----VWFMHCHLELHTGWGLKTAFAVED 546 (564)
Q Consensus 497 ~p~~rDTv~vp~~g~~~irf~adnpG----~wl~HCHil~H~d~GM~~~~~V~~ 546 (564)
...|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 418 ~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 418 DRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 24699999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-57 Score=480.73 Aligned_cols=410 Identities=27% Similarity=0.399 Sum_probs=291.2
Q ss_pred EEEEEEEEEee-cCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCC
Q 008484 35 YQFDVQVKNVS-RLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKT 113 (564)
Q Consensus 35 ~~l~~~~~~~~-~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~P 113 (564)
..+........ ..+.....+.+||++|||+|++++||+|+|+++|++.+.|++||||+..+.. +||++..+++++.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~ 112 (451)
T COG2132 35 TFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGP 112 (451)
T ss_pred eEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCC
Confidence 33333333333 3567788999999999999999999999999999998889999999888844 99999999999999
Q ss_pred CCeEEEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhccCCCC
Q 008484 114 GNSYTYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQKMGLPP 192 (564)
Q Consensus 114 G~~~~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 192 (564)
|++++|.|+. +++||||||+|.+.|. +||+|++||++....+. ..|.+.++...+|+.......... ......
T Consensus 113 ~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 186 (451)
T COG2132 113 GETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGG 186 (451)
T ss_pred CCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccC
Confidence 9999999997 6688999999999988 89999999999977655 347788888888876655443333 122233
Q ss_pred CCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCc
Q 008484 193 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQ 272 (564)
Q Consensus 193 ~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~ 272 (564)
..++..+|||+.. ++...++++||||++|+++...+.+++.+++|+||++||.+++|..+|.+.|.|||
T Consensus 187 ~~g~~~~vnG~~~-----------p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~e 255 (451)
T COG2132 187 FPGDTLLVNGAIL-----------PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGE 255 (451)
T ss_pred CCCCeEEECCCcc-----------ceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcc
Confidence 4568999999764 34555667799999999988888889999999999999999988999999999999
Q ss_pred eEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCC---CCCCCChhhhhhhhhhcccCCCCC
Q 008484 273 TTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQ---LPASNDSEFALNYNKKLRSLNSPK 349 (564)
Q Consensus 273 r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~---~p~~~~~~~~~~~~~~~~~l~~~~ 349 (564)
|+||++++.+ .+.+.+.+... +.. ....+..........+...... .+. .+. ... ....+....
T Consensus 256 r~~v~v~~~~-~~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~-~~~----~~~~~~~~~ 322 (451)
T COG2132 256 RYEVLVDMND-GGAVTLTALGE-DMP-----DTLKGFRAPNPILTPSYPVLNGRVGAPT-GDM-ADH----APVGLLVTI 322 (451)
T ss_pred eEEEEEEcCC-CCeEEEEeccc-cCC-----ceeeeeeccccccccccccccccccCCC-cch-hhc----cccccchhh
Confidence 9999999998 58999998751 110 0111111111100000000000 000 000 000 000000000
Q ss_pred CCCCCCc-CcceEEEEEEccCCCCCCcccCCceeeeeecceeeecCcchhhhhhhccccccccCCCCCCCCCCCCCCCCC
Q 008484 350 FPADVPQ-KVDRKLFYTIGFGKDSCPTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKPFNYTGAP 428 (564)
Q Consensus 350 ~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (564)
.. .+. ..+..+.+.. .-....|.+|+..|.
T Consensus 323 ~~--~~~~~~~~~~~l~~-----------~~~~~~~~~n~~~~~------------------------------------ 353 (451)
T COG2132 323 LV--EPGPNRDTDFHLIG-----------GIGGYVWAINGKAFD------------------------------------ 353 (451)
T ss_pred cC--CCcccccccchhhc-----------ccccccccccCccCC------------------------------------
Confidence 00 000 0000000000 000111333322110
Q ss_pred CCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecC
Q 008484 429 LTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPT 508 (564)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~ 508 (564)
.....+.++.|++++|+|.|.+ .+.||||+||+.|+|++.+ .......+.||||+.+.+
T Consensus 354 --------~~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 354 --------DNRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAP 412 (451)
T ss_pred --------CCcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCC
Confidence 0234567889999999999975 5899999999999999986 122335578999999999
Q ss_pred CCEEEEEEEecCceeeEEEeechhchhcccEEEEEEec
Q 008484 509 GGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVED 546 (564)
Q Consensus 509 ~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 546 (564)
++.++|+|++++||.|+||||+++|++.|||..+.|..
T Consensus 413 ~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 413 GERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred CeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 99999999999999999999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=9.5e-47 Score=377.80 Aligned_cols=264 Identities=21% Similarity=0.261 Sum_probs=216.2
Q ss_pred cCceEEEEEEEEEEEeec-CCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCC--CCceeeeCCCCCCCCCCCCCCCC
Q 008484 29 EAAIKKYQFDVQVKNVSR-LCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQ--YNMSIHWHGLKQYRNGWADGPAY 105 (564)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~~iH~HG~~~~~~~~~DGv~~ 105 (564)
...+++|+|++++..+.. +|....+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++.
T Consensus 24 ~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~ 98 (311)
T TIGR02376 24 GPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAA 98 (311)
T ss_pred CCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCc
Confidence 567889999999999884 699999999999999999999999999999999985 58899999963 3788877
Q ss_pred ccccccCCCCeEEEEEEeCCCCcceeEecchhh----hh-cceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHH
Q 008484 106 ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFW----LR-ATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEE 180 (564)
Q Consensus 106 ~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~----~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~ 180 (564)
+++ |.||++++|+|++ +++||||||||.++ +. .||+|+|||++++..+ ..|+|++++++||+......
T Consensus 99 ~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~ 171 (311)
T TIGR02376 99 LTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEG 171 (311)
T ss_pred cee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccccc
Confidence 776 9999999999998 78999999999653 44 7999999999875422 45889999999999865332
Q ss_pred HHHhhh--ccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc
Q 008484 181 VEKQGQ--KMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT 258 (564)
Q Consensus 181 ~~~~~~--~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~ 258 (564)
...... ........++.++|||+.+++. +.+++++|+++||||+|++....+.||++|+.+++|+.||.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~ 244 (311)
T TIGR02376 172 EGGAYEDDVAAMRTLTPTHVVFNGAVGALT-------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFA 244 (311)
T ss_pred ccccccchHHHHhcCCCCEEEECCccCCCC-------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCccc
Confidence 111000 0001123568999999965321 3568999999999999999889899999999999999999999
Q ss_pred cce--EecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCC
Q 008484 259 KPF--TTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIP 316 (564)
Q Consensus 259 ~p~--~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 316 (564)
.+. .++++.|+||||+||+|++++ ||.|+++||.+.... +....++|+|++..
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 654 489999999999999999998 799999999754321 23478999997643
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=8.2e-35 Score=248.87 Aligned_cols=116 Identities=46% Similarity=0.820 Sum_probs=108.7
Q ss_pred EEEEEEeecCCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeE
Q 008484 38 DVQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSY 117 (564)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~ 117 (564)
+|++..+.++|..+.+|+|||++|||+|+|++||+|+|+|+|.++++++|||||+++.+.+|+||+++++|++|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCC
Q 008484 118 TYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKP 153 (564)
Q Consensus 118 ~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~ 153 (564)
+|+|++++++||||||||.+.+. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999955699999999999876 9999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=3.2e-29 Score=223.51 Aligned_cols=107 Identities=42% Similarity=0.782 Sum_probs=95.1
Q ss_pred CCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEE
Q 008484 436 SRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIR 515 (564)
Q Consensus 436 ~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~ir 515 (564)
..+..++.++.|++|||+|.|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 35678899999999999999965 67999999999999999987665433 345678899999999999999999999
Q ss_pred EEecCceeeEEEeechhchhcccEEEEEEec
Q 008484 516 FRADNPGVWFMHCHLELHTGWGLKTAFAVED 546 (564)
Q Consensus 516 f~adnpG~wl~HCHil~H~d~GM~~~~~V~~ 546 (564)
|+++|||.|+|||||++|+|.|||+.|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=2e-26 Score=209.84 Aligned_cols=149 Identities=37% Similarity=0.643 Sum_probs=121.7
Q ss_pred CcEEEEeecccccCHHHHHHhhhccCC----CCCCCceEEEcCcCCCCCCCC-----CCCeeeEEEecCcEEEEEEEecC
Q 008484 164 REEVILLGEWWHTDVEEVEKQGQKMGL----PPNMSDAHTINGKPGPLFPCS-----EKHTFAMEVESGKTYLLRIINAA 234 (564)
Q Consensus 164 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~~~~~~~~-----~~~~~~l~~~~G~~~rlriiN~~ 234 (564)
.|++|+++|||+++......+....+. .+..+++++|||+.. +.|+ ....+.+++++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 378999999999888777665444322 367889999999975 4454 24568999999999999999999
Q ss_pred CCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEcc
Q 008484 235 LNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKG 314 (564)
Q Consensus 235 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~ 314 (564)
+...+.|+|+||+|+|||+||.+++|++++++.|++||||||+|++++++|.|+|++...........+....|+|+|++
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999977999999963222222234566899999975
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.72 E-value=2.9e-16 Score=169.33 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=144.2
Q ss_pred EEEECCcCCC--CeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCC
Q 008484 53 IVTVNGRFPG--PTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTG 125 (564)
Q Consensus 53 ~~~~Ng~~pg--P~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~ 125 (564)
.+++||+.+. +++.+++|+++|+||.|..... ..++..|....-.. .||.+. +....|.||||++..+++ .
T Consensus 248 ~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~ 325 (587)
T TIGR01480 248 TYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-T 325 (587)
T ss_pred eEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-C
Confidence 3789999763 5899999999999999998655 44777776543222 788543 346778999999999987 4
Q ss_pred CCcceeEecchhhhhcceeeeEEEeCCC-CCCC-CCCCC----CCcEEE------------Eeec---cccc--------
Q 008484 126 QRGTLWWHAHIFWLRATVYGAIVIMPKP-GSPF-PFPQP----NREEVI------------LLGE---WWHT-------- 176 (564)
Q Consensus 126 ~~Gt~wYH~h~~~~~~Gl~G~iiV~~~~-~~~~-~~~~~----~~e~~l------------~~~d---~~~~-------- 176 (564)
+.|.|+........ .|...+.+..... ..+. +.... ..+.-. .+.. ..+.
T Consensus 326 ~~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (587)
T TIGR01480 326 GDDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAP 404 (587)
T ss_pred CCceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCcccccccccc
Confidence 67899988765433 2333333322111 1000 01000 000000 0000 0000
Q ss_pred --------------------------------------------CHHHHH--Hhhhc---------cCC-------CCCC
Q 008484 177 --------------------------------------------DVEEVE--KQGQK---------MGL-------PPNM 194 (564)
Q Consensus 177 --------------------------------------------~~~~~~--~~~~~---------~g~-------~~~~ 194 (564)
.....+ ..... .+. ....
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~ 484 (587)
T TIGR01480 405 MDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNME 484 (587)
T ss_pred CccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCc
Confidence 000000 00000 000 0001
Q ss_pred CceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceE
Q 008484 195 SDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTT 274 (564)
Q Consensus 195 ~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~ 274 (564)
...|+|||+.++ ..+.++++.||+|||||+|.+ ...|.+|+|||.|.++..||.+ +...|++.|.||+++
T Consensus 485 ~~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~ 554 (587)
T TIGR01480 485 RFAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKR 554 (587)
T ss_pred eeEEEECCccCC-------CCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEE
Confidence 124899999762 234689999999999999987 6778899999999999888863 233589999999999
Q ss_pred EEEEEeCCCCceeEEEEee
Q 008484 275 NVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 275 dv~v~~~~~pg~y~l~~~~ 293 (564)
++.|++++ ||+|++|||.
T Consensus 555 ~~~f~ad~-pG~w~~HCH~ 572 (587)
T TIGR01480 555 SFRVTADA-LGRWAYHCHM 572 (587)
T ss_pred EEEEECCC-CeEEEEcCCC
Confidence 99999998 7999999994
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.71 E-value=8e-17 Score=142.99 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=80.6
Q ss_pred CCceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCC---CCceeeeCCCCCCCCCCCCCCCCccccccCCC----Ce--E
Q 008484 47 LCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQ---YNMSIHWHGLKQYRNGWADGPAYITQCPIKTG----NS--Y 117 (564)
Q Consensus 47 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG----~~--~ 117 (564)
.+.....+.++|. ++|+|++++||+|+|+|+|.+. ....||+||......+.+||++.++++++.|+ +. .
T Consensus 37 ~~~~~~~f~~~~~-~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHDL-KNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecCC-CCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 3456677889985 5899999999999999999965 33556766665544445899999999998884 21 3
Q ss_pred EEEEEeCCCCcceeEecchhhhh-cceeeeEEEe
Q 008484 118 TYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIM 150 (564)
Q Consensus 118 ~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~ 150 (564)
+++|++ .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 556665 5899999999998888 7999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.70 E-value=2.9e-15 Score=150.62 Aligned_cols=236 Identities=18% Similarity=0.167 Sum_probs=149.8
Q ss_pred CceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCC-CCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCce
Q 008484 195 SDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAAL-NDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQT 273 (564)
Q Consensus 195 ~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~-~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r 273 (564)
...+++||+. ..|.+++++|+++++++.|... ...+++|+|++. +.||.. ....|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~------~~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA------ALTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC------cceeECCCCe
Confidence 3678999984 2378999999999999999863 257789999874 467752 1234899999
Q ss_pred EEEEEEeCCCCceeEEEEeecCCCCCCCCCCceEEEEEEccCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCCCCC
Q 008484 274 TNVLVQANQKPGRYFMAARPFNDAPIPVDNKTATGILQYKGIPNSLLPTLAQLPASNDSEFALNYNKKLRSLNSPKFPAD 353 (564)
Q Consensus 274 ~dv~v~~~~~pg~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~p~~ 353 (564)
+...|++++ +|+||+|||....... ....+..+.|....... .+
T Consensus 108 ~ty~F~~~~-~Gty~YH~H~~~~~~~-q~~~Gl~G~liV~~~~~--------~~-------------------------- 151 (311)
T TIGR02376 108 ATLRFKATR-PGAFVYHCAPPGMVPW-HVVSGMNGAIMVLPREG--------LP-------------------------- 151 (311)
T ss_pred EEEEEEcCC-CEEEEEEcCCCCchhH-HhhcCcceEEEeeccCC--------Cc--------------------------
Confidence 999999987 7999999995321000 00112233333332110 00
Q ss_pred CCcCcceEEEEEEc---cCCCCC---------CcccCCceeeeeecceeeecCcchhhhhhhccccccccCCCCCCCCCC
Q 008484 354 VPQKVDRKLFYTIG---FGKDSC---------PTCVNGTRLLATLNNISFVMPQTALLQAHYFNLKGVFKADFPDKPPKP 421 (564)
Q Consensus 354 ~p~~~d~~~~~~~~---~~~~~~---------~~~~~g~~~~~~~n~~s~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~ 421 (564)
..|+++.+.+. +..... ..+..+..-...+||+..
T Consensus 152 ---~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~------------------------------ 198 (311)
T TIGR02376 152 ---EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVG------------------------------ 198 (311)
T ss_pred ---CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccC------------------------------
Confidence 01222211100 000000 000000000012222210
Q ss_pred CCCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCC-c
Q 008484 422 FNYTGAPLTASLGTSRATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPI-E 500 (564)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~-~ 500 (564)
+ ......++.|++++|.|.|.+ ....+.||++|++|+++... |.+ +..+. .
T Consensus 199 --------~-------~~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~----------~~~~~~~ 250 (311)
T TIGR02376 199 --------A-------LTGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKF----------ANPPNRD 250 (311)
T ss_pred --------C-------CCCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Ccc----------cCCCCCC
Confidence 0 011236788999999999976 45679999999999999883 321 11122 3
Q ss_pred ceeeEecCCCEEEEEEEecCceeeEEEeechhch-hcccEEEEEEec
Q 008484 501 RNTAAVPTGGWTAIRFRADNPGVWFMHCHLELHT-GWGLKTAFAVED 546 (564)
Q Consensus 501 rDTv~vp~~g~~~irf~adnpG~wl~HCHil~H~-d~GM~~~~~V~~ 546 (564)
.|++.|.||....|.++++.||.|++|||...|+ ..||+++++|..
T Consensus 251 ~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 251 VETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred cceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 6899999999999999999999999999999998 779999998854
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.60 E-value=6.9e-14 Score=149.87 Aligned_cols=232 Identities=14% Similarity=0.140 Sum_probs=142.5
Q ss_pred eeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCC-ceeee---CCCCCCCCCCCCCCCC-----ccccccCCCCeEEEE
Q 008484 50 AKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYN-MSIHW---HGLKQYRNGWADGPAY-----ITQCPIKTGNSYTYD 120 (564)
Q Consensus 50 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~---HG~~~~~~~~~DGv~~-----~~~~~i~PG~~~~y~ 120 (564)
....+++||+. .|.+.++ |.++|+||.|..... ..+.+ |-+.+.. .||.+. +....|.||||++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 44678999996 6888885 669999999998643 34555 3344444 788432 345679999999999
Q ss_pred EEeCCCCcceeEecchhhhhcce--------eeeEEEeCCC---CCCCC-----CCC-------CCCcEEEEeeccccc-
Q 008484 121 FNVTGQRGTLWWHAHIFWLRATV--------YGAIVIMPKP---GSPFP-----FPQ-------PNREEVILLGEWWHT- 176 (564)
Q Consensus 121 ~~~~~~~Gt~wYH~h~~~~~~Gl--------~G~iiV~~~~---~~~~~-----~~~-------~~~e~~l~~~d~~~~- 176 (564)
+++ .+.|.++...-.... .|+ +-.+.|.... ....| .+. ..+...+.+..+...
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 987 556777665532111 111 1123333111 00000 000 011223322211000
Q ss_pred --------CHHHHHHh--------hhccC-------C----CC--CCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEE
Q 008484 177 --------DVEEVEKQ--------GQKMG-------L----PP--NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYL 227 (564)
Q Consensus 177 --------~~~~~~~~--------~~~~g-------~----~~--~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~r 227 (564)
........ ....| . .. .....++|||+.++ ...+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEE
Confidence 00000000 00000 0 00 00012489999763 134668999999999
Q ss_pred EEEEecCCCCeEEEEEcCceeEEEeeCCCccc---ceEecEEEECCCceEEEEEEeCC---CCceeEEEEeecC
Q 008484 228 LRIINAALNDELFFAIAGHNFTVVEVDAVYTK---PFTTEAILIAPGQTTNVLVQANQ---KPGRYFMAARPFN 295 (564)
Q Consensus 228 lriiN~~~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~v~l~pg~r~dv~v~~~~---~pg~y~l~~~~~~ 295 (564)
|+|+|.+....|.|||||++|+|++.||.... +.++||+.|.+ ++++++++++. .+|.|++|||...
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchh
Confidence 99999996667899999999999999999764 45789999977 88999999985 2479999999653
No 25
>PLN02835 oxidoreductase
Probab=99.52 E-value=6.9e-13 Score=142.71 Aligned_cols=240 Identities=14% Similarity=0.118 Sum_probs=146.1
Q ss_pred eeEEEECCcCCCCeEEeecCCEEEEEEEeCCCC-CceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCC
Q 008484 51 KPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQY-NMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTG 125 (564)
Q Consensus 51 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~ 125 (564)
...+++||+. .+++++++|+++|+||.|.... ...+|..|....-. ..||.+. +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI-~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLV-EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEE-EECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4679999997 5899999999999999999865 45577777665432 2788543 33566999999999999865
Q ss_pred CCcceeEecchhhhhcceee-eEEEeCCCCC--CCCCCC---CC--------CcEEEEeecccccCH-H-HH-HHhh---
Q 008484 126 QRGTLWWHAHIFWLRATVYG-AIVIMPKPGS--PFPFPQ---PN--------REEVILLGEWWHTDV-E-EV-EKQG--- 185 (564)
Q Consensus 126 ~~Gt~wYH~h~~~~~~Gl~G-~iiV~~~~~~--~~~~~~---~~--------~e~~l~~~d~~~~~~-~-~~-~~~~--- 185 (564)
.+|.||...-.......+.+ +++....... ..+.+. .+ ......+........ . .. ....
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 68999998643111111111 2333222110 001100 00 000000000000000 0 00 0000
Q ss_pred -h--ccCCCCC--CCceEEEcCcCCCCCC---------------CCC------------CCeeeEEEecCcEEEEEEEec
Q 008484 186 -Q--KMGLPPN--MSDAHTINGKPGPLFP---------------CSE------------KHTFAMEVESGKTYLLRIINA 233 (564)
Q Consensus 186 -~--~~g~~~~--~~~~~~iNG~~~~~~~---------------~~~------------~~~~~l~~~~G~~~rlriiN~ 233 (564)
. ....... ....+.+||..+.... |.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 0 0000000 0135778887752100 100 012345778899999999998
Q ss_pred CCCCeEEEEEcCceeEEEee-CCCc----------ccceEecEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008484 234 ALNDELFFAIAGHNFTVVEV-DAVY----------TKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 294 (564)
Q Consensus 234 ~~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~ 294 (564)
. ...|+||||||.|+|++. +|.+ ..|...||+.+.+++.+.+.|++++ ||.|.||||..
T Consensus 429 ~-~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG~Wl~HCHi~ 498 (539)
T PLN02835 429 E-KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QGMWNMRSAIW 498 (539)
T ss_pred C-CCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CEEeeeeecch
Confidence 6 446789999999999987 5522 2488999999999999999999999 79999999953
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.52 E-value=3e-12 Score=138.89 Aligned_cols=242 Identities=15% Similarity=0.110 Sum_probs=143.5
Q ss_pred eEEEECCcC-C--------CCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeE
Q 008484 52 PIVTVNGRF-P--------GPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSY 117 (564)
Q Consensus 52 ~~~~~Ng~~-p--------gP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~ 117 (564)
..+++||+. + .++|.|++|+++|+||.|..... ..+|.+|....-. ..||++. +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VI-a~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVV-EVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEE-EeCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 14899999999999999997543 4566666554332 2788642 335679999999
Q ss_pred EEEEEeCCCCcceeEecchhhh-----h-cceeeeEEEeCCCCCCCCCCC----CCC-----c----E-EEEeecccc--
Q 008484 118 TYDFNVTGQRGTLWWHAHIFWL-----R-ATVYGAIVIMPKPGSPFPFPQ----PNR-----E----E-VILLGEWWH-- 175 (564)
Q Consensus 118 ~y~~~~~~~~Gt~wYH~h~~~~-----~-~Gl~G~iiV~~~~~~~~~~~~----~~~-----e----~-~l~~~d~~~-- 175 (564)
+..+++++.+|.||.+.+.... . ..-.+.|...+......+... .+. + . .+.......
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999985558999999875311 1 111233332222211111000 000 0 0 000000000
Q ss_pred -cCHHHH-HHhhhc---cC------CCCCCCceEEEcCcCCCC---------------------------CCC-CCC---
Q 008484 176 -TDVEEV-EKQGQK---MG------LPPNMSDAHTINGKPGPL---------------------------FPC-SEK--- 213 (564)
Q Consensus 176 -~~~~~~-~~~~~~---~g------~~~~~~~~~~iNG~~~~~---------------------------~~~-~~~--- 213 (564)
...... ...... .. ......-.+.|||..+.. .-| +..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 000000 000000 00 000001235778875310 001 000
Q ss_pred -------CeeeEEEecCcEEEEEEEecCC--CCeEEEEEcCceeEEEeeC-CCc-----------ccceEecEEEECCCc
Q 008484 214 -------HTFAMEVESGKTYLLRIINAAL--NDELFFAIAGHNFTVVEVD-AVY-----------TKPFTTEAILIAPGQ 272 (564)
Q Consensus 214 -------~~~~l~~~~G~~~rlriiN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pg~ 272 (564)
....+.++.|+++++.|.|.+. ...|+||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788899999999999753 3378999999999999885 321 247789999999999
Q ss_pred eEEEEEEeCCCCceeEEEEeecC
Q 008484 273 TTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 273 r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
.+-+.|++++ ||.|.||||...
T Consensus 486 ~vvirf~adN-PG~W~~HCHi~~ 507 (539)
T TIGR03389 486 WAAIRFVADN-PGVWFMHCHLEV 507 (539)
T ss_pred eEEEEEecCC-CeEEEEEecccc
Confidence 9999999999 799999999543
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.51 E-value=7.1e-13 Score=140.83 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=134.4
Q ss_pred ceeeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCC-ceeee-CCC--CCCCCCCCCCCCC-----ccccccCCCCeEEE
Q 008484 49 HAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYN-MSIHW-HGL--KQYRNGWADGPAY-----ITQCPIKTGNSYTY 119 (564)
Q Consensus 49 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~-HG~--~~~~~~~~DGv~~-----~~~~~i~PG~~~~y 119 (564)
.....+++||+. .|.|.|+.| ++|+||.|..... ..+++ .|. .+.. .||... +.+..|.||||++.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa---~DGg~~~~P~~~~~l~l~pGeR~dv 281 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA---GDQGFLPAPVSVKQLSLAPGERREI 281 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE---eCCCcccCCcEeCeEEECCCCeEEE
Confidence 345679999996 799999875 8999999998754 45776 443 4443 785322 34577899999999
Q ss_pred EEEeCCCCcceeEecchhhh-hcceee------------eEEEeCCCC---CCCCCCCCCCcEEEEeecccccCHHHHHH
Q 008484 120 DFNVTGQRGTLWWHAHIFWL-RATVYG------------AIVIMPKPG---SPFPFPQPNREEVILLGEWWHTDVEEVEK 183 (564)
Q Consensus 120 ~~~~~~~~Gt~wYH~h~~~~-~~Gl~G------------~iiV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~~ 183 (564)
.+++ .+.+.+.+++-.... ...+.+ .+-++.... ...+.+..... ........... .
T Consensus 282 lVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~~~~~~~~~~-~ 354 (471)
T PRK10883 282 LVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLP-----DEIMEGSPIRS-R 354 (471)
T ss_pred EEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcC-----CCCCCCCCcce-E
Confidence 9997 555566666532110 011111 111111110 00000000000 00000000000 0
Q ss_pred hhhccCCCCCCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccc---
Q 008484 184 QGQKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKP--- 260 (564)
Q Consensus 184 ~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p--- 260 (564)
..... .+.++|||+.+. ...+.++++.|++++|+|.|. ..|+||||||.|+|++.||....+
T Consensus 355 ~~~l~------~~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~ 419 (471)
T PRK10883 355 EISLG------DDLPGINGALWD------MNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDR 419 (471)
T ss_pred EEEec------CCcCccCCcccC------CCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCcccc
Confidence 00001 123479999863 123457899999999999886 368899999999999999986533
Q ss_pred eEecEEEECCCceEEEEEEeCCCCc---eeEEEEeecC
Q 008484 261 FTTEAILIAPGQTTNVLVQANQKPG---RYFMAARPFN 295 (564)
Q Consensus 261 ~~~d~v~l~pg~r~dv~v~~~~~pg---~y~l~~~~~~ 295 (564)
-+.|||.+. +++++++++++..| .|++|||-..
T Consensus 420 gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 420 GWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred CcCcEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 457999994 57999999998433 7999999654
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.39 E-value=4.4e-12 Score=108.60 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=79.7
Q ss_pred CcccCceEEEEEEEE--EEEe---ecCCceeeEE-EECCcCCCCeEEeecCCEEEEEEEeCCCCCce--eeeCCCCCCCC
Q 008484 26 FPAEAAIKKYQFDVQ--VKNV---SRLCHAKPIV-TVNGRFPGPTIYVREGDRVLVNVTNHAQYNMS--IHWHGLKQYRN 97 (564)
Q Consensus 26 ~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~--iH~HG~~~~~~ 97 (564)
..+.+..++|+++|. +..+ +..|+....+ .+|+++..+.|+|++||+|+|++.|..+.++. ++++|+
T Consensus 18 ~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi----- 92 (135)
T TIGR03096 18 GTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI----- 92 (135)
T ss_pred cchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc-----
Confidence 345677789999999 6655 4578777766 99999988899999999999999999876543 443332
Q ss_pred CCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhh
Q 008484 98 GWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR 140 (564)
Q Consensus 98 ~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~ 140 (564)
+..|.||++.+|+|++ +++|+|||||..|...
T Consensus 93 ----------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 93 ----------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred ----------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 1468999999999998 9999999999988654
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.38 E-value=1.3e-11 Score=131.55 Aligned_cols=234 Identities=19% Similarity=0.171 Sum_probs=146.2
Q ss_pred CceeeEEEECCcCCCCeEEeecCCEEEEEEEeCC-CCCceeeeCCCCCCCCCCCCCCC----CccccccCCCCeEEEEEE
Q 008484 48 CHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHA-QYNMSIHWHGLKQYRNGWADGPA----YITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 48 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~~~ 122 (564)
|..+....+||+. -|.+ +.+|..+|+||.|.. .....+++.|....-.. .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4566777888855 3444 455555999999998 44455766655443322 67755 466788999999999998
Q ss_pred eCCCCcceeEecchhhhhcceeeeEEEeCCCCCCCCCCCCCCcEEEEeecc-cccCHHHHHHhhhccC---------CCC
Q 008484 123 VTGQRGTLWWHAHIFWLRATVYGAIVIMPKPGSPFPFPQPNREEVILLGEW-WHTDVEEVEKQGQKMG---------LPP 192 (564)
Q Consensus 123 ~~~~~Gt~wYH~h~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~-~~~~~~~~~~~~~~~g---------~~~ 192 (564)
. ...|++-+.+......+-+.+..-........ ....+........|- ...............+ ...
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPS--YPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccc--cccccccccCCCcchhhccccccchhhcCCCcccccccchhhcc
Confidence 7 44789988888722112222222111111000 000111111111110 0000000000000000 011
Q ss_pred CCCceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc--cceEecEEEECC
Q 008484 193 NMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT--KPFTTEAILIAP 270 (564)
Q Consensus 193 ~~~~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~v~l~p 270 (564)
.....+.+||+.++. ....+.++.|+++||+|.|-+. ..|.||+||+.|+|++.|.... .+..+|++.+.+
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 122558888887631 3467899999999999999996 8888999999999999992222 457899999999
Q ss_pred CceEEEEEEeCCCCceeEEEEeecC
Q 008484 271 GQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 271 g~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
++++.+.++++. ||.|++|||...
T Consensus 413 ~~~~~v~~~a~~-~g~~~~HCH~l~ 436 (451)
T COG2132 413 GERLLVRFDADY-PGPWMFHCHILE 436 (451)
T ss_pred CeEEEEEEeCCC-CCceEEeccchh
Confidence 999999999999 689999999643
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.35 E-value=8.3e-11 Score=126.43 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=142.5
Q ss_pred eeEEEECCcCC-CCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeC
Q 008484 51 KPIVTVNGRFP-GPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVT 124 (564)
Q Consensus 51 ~~~~~~Ng~~p-gP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~ 124 (564)
...+++||+.+ .|+|.+++|+++|+|+.|..... ..++..|....-.. .||.+. +.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999852 47999999999999999997553 44666555443222 788432 3467799999999999984
Q ss_pred CCC-c---ceeEecchhhhhccee-eeEEEeCCCCCC--CCCC---CC-CC----cEEEEee-ccc---ccC-HHH---H
Q 008484 125 GQR-G---TLWWHAHIFWLRATVY-GAIVIMPKPGSP--FPFP---QP-NR----EEVILLG-EWW---HTD-VEE---V 181 (564)
Q Consensus 125 ~~~-G---t~wYH~h~~~~~~Gl~-G~iiV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~---~~~-~~~---~ 181 (564)
+++ | .||...-.......+. .+++..+..... .+.+ .. +. +....+. ... ... ... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 443 4 7998876521111111 234443322110 1111 00 00 0000000 000 000 000 0
Q ss_pred -----HHhhhccCCC--CCCCceEEEcCcCCCC----------CC---CC--C--C----------CeeeEEEecCcEEE
Q 008484 182 -----EKQGQKMGLP--PNMSDAHTINGKPGPL----------FP---CS--E--K----------HTFAMEVESGKTYL 227 (564)
Q Consensus 182 -----~~~~~~~g~~--~~~~~~~~iNG~~~~~----------~~---~~--~--~----------~~~~l~~~~G~~~r 227 (564)
.......... ......+.|||..+.. +. .. . . ....++++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 0000000000 0001356788877531 00 00 0 0 12346788899999
Q ss_pred EEEEecCCCCeEEEEEcCceeEEEee-----CC------CcccceEecEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 228 LRIINAALNDELFFAIAGHNFTVVEV-----DA------VYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 228 lriiN~~~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
+-|-|.. ...|+||||||.|+|++. |+ ++..|...|++.+.++.-+-+.|++++ ||-|.||||-
T Consensus 427 iViqn~~-~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPL-FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QGMWNVRSQK 501 (545)
T ss_pred EEEeCCC-CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-CeEEeeeecC
Confidence 8888876 457889999999999976 21 224688999999999999999999999 7999999994
No 31
>PLN02991 oxidoreductase
Probab=99.32 E-value=1.9e-10 Score=123.41 Aligned_cols=240 Identities=11% Similarity=0.089 Sum_probs=141.5
Q ss_pred eeEEEECCcCCCCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCC
Q 008484 51 KPIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTG 125 (564)
Q Consensus 51 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~ 125 (564)
...+++||+...+++.|++|+++|+||.|..... ..++..|....-.. .||.+. +.+..|.||||++..+++++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 4678999996558999999999999999998654 34555555443222 788542 44577999999999999966
Q ss_pred CCcceeEecchhhhhcceee-eEEEeCCCCCC--CCCCC--CCCcEEEEee---ccc-----ccC-HHH------H-HH-
Q 008484 126 QRGTLWWHAHIFWLRATVYG-AIVIMPKPGSP--FPFPQ--PNREEVILLG---EWW-----HTD-VEE------V-EK- 183 (564)
Q Consensus 126 ~~Gt~wYH~h~~~~~~Gl~G-~iiV~~~~~~~--~~~~~--~~~e~~l~~~---d~~-----~~~-~~~------~-~~- 183 (564)
.+|.||.-.........+.+ +|+-.+..... .+.+. .+.+...-.. ++. ... ... . ..
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 68899976543211111111 23322221110 01100 0000000000 000 000 000 0 00
Q ss_pred hh-hccCCC-CCCCceEEEcCcCCCCC----------CCC-----------------CCCeeeEEEecCcEEEEEEEecC
Q 008484 184 QG-QKMGLP-PNMSDAHTINGKPGPLF----------PCS-----------------EKHTFAMEVESGKTYLLRIINAA 234 (564)
Q Consensus 184 ~~-~~~g~~-~~~~~~~~iNG~~~~~~----------~~~-----------------~~~~~~l~~~~G~~~rlriiN~~ 234 (564)
.. ...+.. ....-.+.|||..+... +-+ ....-.+.++.|++|.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 000000 00012567787764210 000 01122456788889988888865
Q ss_pred CCCeEEEEEcCceeEEEeeC-CC----------cccceEecEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 235 LNDELFFAIAGHNFTVVEVD-AV----------YTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 235 ~~~~~~~~l~gh~~~via~D-G~----------~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
...|+||||||.|+|++.. |. +..|...|++.+.++.-+-+.|++++ ||.|.||||-
T Consensus 429 -~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~W~~HCHi 496 (543)
T PLN02991 429 -DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VGMWNLRSEL 496 (543)
T ss_pred -CCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CEEeeeeeCc
Confidence 3478899999999999853 21 23688899999999999999999999 7999999996
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.32 E-value=8.6e-11 Score=126.83 Aligned_cols=239 Identities=11% Similarity=0.107 Sum_probs=143.6
Q ss_pred eEEEECCcCC------CCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEE
Q 008484 52 PIVTVNGRFP------GPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYD 120 (564)
Q Consensus 52 ~~~~~Ng~~p------gP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~ 120 (564)
..+++||+.. -|+|.|++|++.|+||.|..... ..++..|....-. ..||++. +....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV-EMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE-EeCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 27999999999999999998654 4577766654322 2788642 335679999999999
Q ss_pred EEeCCCCcceeEecchhhhh--cceeeeEEEeCCCCCC-CCCCCCCCcE--EE-Eeecccc-------cC-H-HH-H---
Q 008484 121 FNVTGQRGTLWWHAHIFWLR--ATVYGAIVIMPKPGSP-FPFPQPNREE--VI-LLGEWWH-------TD-V-EE-V--- 181 (564)
Q Consensus 121 ~~~~~~~Gt~wYH~h~~~~~--~Gl~G~iiV~~~~~~~-~~~~~~~~e~--~l-~~~d~~~-------~~-~-~~-~--- 181 (564)
+++++.+|.||......... ..-.|.|.-....... ...+...... .. ...+... .. . .. .
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99966689999988753222 1223333332221100 0010000000 00 0000000 00 0 00 0
Q ss_pred H---Hhh-hccCC-CCCCCceEEEcCcCCCCC----------CCC--------------------CCCeeeEEEecCcEE
Q 008484 182 E---KQG-QKMGL-PPNMSDAHTINGKPGPLF----------PCS--------------------EKHTFAMEVESGKTY 226 (564)
Q Consensus 182 ~---~~~-~~~g~-~~~~~~~~~iNG~~~~~~----------~~~--------------------~~~~~~l~~~~G~~~ 226 (564)
. ... ..... .......+.|||..+... +.. ......+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 00000 000013467888664210 000 001234677788999
Q ss_pred EEEEEecCCCCeEEEEEcCceeEEEeeC-CC----------cccceEecEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 227 LLRIINAALNDELFFAIAGHNFTVVEVD-AV----------YTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 227 rlriiN~~~~~~~~~~l~gh~~~via~D-G~----------~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
.+-|.|.. ...|+||||||.|+|++.. |. ...|...|++.+.++.-+-+.|++++ ||-|.||||-
T Consensus 429 eiVi~n~~-~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PGvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHE-KSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AGMWNIRSEN 504 (552)
T ss_pred EEEEeCCC-CCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-CeEEeeeccc
Confidence 99999875 4478899999999999763 21 13588999999999999999999999 7999999996
No 33
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.30 E-value=1.4e-10 Score=125.98 Aligned_cols=230 Identities=14% Similarity=0.151 Sum_probs=132.7
Q ss_pred eEEeecCCEEEEEEEeCCC-CCceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCCCC-cceeEecchh
Q 008484 64 TIYVREGDRVLVNVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQR-GTLWWHAHIF 137 (564)
Q Consensus 64 ~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~~~-Gt~wYH~h~~ 137 (564)
+|.|++|+++|+||.|... ....++..|....-.. .||.+. +....|.||||++..++++..+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 5899999999999999874 3344555554432221 788542 3356699999999999984434 5899987654
Q ss_pred hhh--cceeeeEEEeCCCCCCC-C-C-----CC-CCC---c-EEE-EeecccccCH-HHHHHh-h-hccCCCCCCCceEE
Q 008484 138 WLR--ATVYGAIVIMPKPGSPF-P-F-----PQ-PNR---E-EVI-LLGEWWHTDV-EEVEKQ-G-QKMGLPPNMSDAHT 199 (564)
Q Consensus 138 ~~~--~Gl~G~iiV~~~~~~~~-~-~-----~~-~~~---e-~~l-~~~d~~~~~~-~~~~~~-~-~~~g~~~~~~~~~~ 199 (564)
... .....+++......... + . +. .+. + ..+ .+........ ...... . ...+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 332 11112444432211100 0 0 00 000 0 000 0000000000 000000 0 00000000112366
Q ss_pred EcCcCCCC-------------------------CC-------C----C-CCCeeeEEEecCcEEEEEEEecCC-----CC
Q 008484 200 INGKPGPL-------------------------FP-------C----S-EKHTFAMEVESGKTYLLRIINAAL-----ND 237 (564)
Q Consensus 200 iNG~~~~~-------------------------~~-------~----~-~~~~~~l~~~~G~~~rlriiN~~~-----~~ 237 (564)
+||..+.. ++ | . ....-.+.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77765420 00 0 0 001134788899999999999752 34
Q ss_pred eEEEEEcCceeEEEeeC-CCc-----------ccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 238 ELFFAIAGHNFTVVEVD-AVY-----------TKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 238 ~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
.|.||||||+|+|++.. |.+ ..|...||+.+.++..+-+.|++++ ||.|.||||...
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG~W~~HCHi~~ 511 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PGVWAFHCHIEP 511 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-CeEeeeeccchh
Confidence 68899999999999986 432 1477899999999999999999999 799999999543
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.29 E-value=1.7e-10 Score=124.80 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=140.6
Q ss_pred eEEEECCcC---------------CCCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCC---CCCCCCCCCCCC----ccc
Q 008484 52 PIVTVNGRF---------------PGPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLK---QYRNGWADGPAY----ITQ 108 (564)
Q Consensus 52 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~---~~~~~~~DGv~~----~~~ 108 (564)
..+++||+. ..|+|+|++|+++|+||.|..... ..+++.|.. +.. .||... +..
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa---~DG~~~~P~~v~~ 248 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE---ADGSYTKPAKIDH 248 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE---eCCCCCCceEeCe
Confidence 468999983 127899999999999999998654 346665544 443 788632 334
Q ss_pred cccCCCCeEEEEEEeCCC-------CcceeEecchhhhhcceee-eEEEeC-CCCCCCC---C-C--CC------CCcEE
Q 008484 109 CPIKTGNSYTYDFNVTGQ-------RGTLWWHAHIFWLRATVYG-AIVIMP-KPGSPFP---F-P--QP------NREEV 167 (564)
Q Consensus 109 ~~i~PG~~~~y~~~~~~~-------~Gt~wYH~h~~~~~~Gl~G-~iiV~~-~~~~~~~---~-~--~~------~~e~~ 167 (564)
..|.||||++..+++++. +|-||...-.......+.+ +++... ......+ . + .. ..+..
T Consensus 249 l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 328 (538)
T TIGR03390 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYE 328 (538)
T ss_pred EEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhhee
Confidence 669999999999998432 4889877543221111222 333332 2111111 0 0 00 01111
Q ss_pred EE-eecccc---cCHHHHHHh-hhccCCC--C-CCCceEEEcCcCCCC--C----------C---C------------CC
Q 008484 168 IL-LGEWWH---TDVEEVEKQ-GQKMGLP--P-NMSDAHTINGKPGPL--F----------P---C------------SE 212 (564)
Q Consensus 168 l~-~~d~~~---~~~~~~~~~-~~~~g~~--~-~~~~~~~iNG~~~~~--~----------~---~------------~~ 212 (564)
+. +..-.. ......... ....+.. . .....+++||..+.. . + . ..
T Consensus 329 l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
T TIGR03390 329 LEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFD 408 (538)
T ss_pred eEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcC
Confidence 11 100000 000000000 0000000 0 011457788876531 0 0 0 00
Q ss_pred CCeeeEEEecCcEEEEEEEecC-------CCCeEEEEEcCceeEEEee-CCCc-----------ccceEecEEEEC----
Q 008484 213 KHTFAMEVESGKTYLLRIINAA-------LNDELFFAIAGHNFTVVEV-DAVY-----------TKPFTTEAILIA---- 269 (564)
Q Consensus 213 ~~~~~l~~~~G~~~rlriiN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~v~l~---- 269 (564)
.....+.++.|+++++.|.|.. ....|+||||||+|+||+. +|.+ ..|...|++.+.
T Consensus 409 ~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~ 488 (538)
T TIGR03390 409 PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV 488 (538)
T ss_pred cCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc
Confidence 0112567888999999999975 2467899999999999985 4533 258889999994
Q ss_pred ------CCceEEEEEEeCCCCceeEEEEeec
Q 008484 270 ------PGQTTNVLVQANQKPGRYFMAARPF 294 (564)
Q Consensus 270 ------pg~r~dv~v~~~~~pg~y~l~~~~~ 294 (564)
++..+.+.+++++ ||.|.||||..
T Consensus 489 ~~~~~~~~~~~~ir~~~dN-PG~W~~HCHi~ 518 (538)
T TIGR03390 489 KVVPGAPAGWRAWRIRVTN-PGVWMMHCHIL 518 (538)
T ss_pred cccccCCCceEEEEEEcCC-CeeEEEeccch
Confidence 7899999999998 79999999954
No 35
>PLN02792 oxidoreductase
Probab=99.28 E-value=3.5e-10 Score=121.57 Aligned_cols=241 Identities=16% Similarity=0.099 Sum_probs=143.2
Q ss_pred eeeEEEECCcC--CCCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEE
Q 008484 50 AKPIVTVNGRF--PGPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 50 ~~~~~~~Ng~~--pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~ 122 (564)
....+++||+- ..++|.|++|+++|+||.|..... ..++..|....-.. .||.+. +....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34678999983 247899999999999999998654 45666665543222 788532 34567999999999999
Q ss_pred eCCCCcceeEecchhhhhcceee-eEEEeCCCCCCC---C-CCCC-CCcEEEEe---eccccc-----CHH-H---H--H
Q 008484 123 VTGQRGTLWWHAHIFWLRATVYG-AIVIMPKPGSPF---P-FPQP-NREEVILL---GEWWHT-----DVE-E---V--E 182 (564)
Q Consensus 123 ~~~~~Gt~wYH~h~~~~~~Gl~G-~iiV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~-----~~~-~---~--~ 182 (564)
+++.+|.||...........+.+ +|+-........ + .+.. +.....-. .++... ... . . .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 85557999988764321111111 333332221110 0 0000 00000000 000000 000 0 0 0
Q ss_pred H--hhh-ccCCCCC--CCceEEEcCcCCCC----------C---CC-C----CC----------CeeeEEEecCcEEEEE
Q 008484 183 K--QGQ-KMGLPPN--MSDAHTINGKPGPL----------F---PC-S----EK----------HTFAMEVESGKTYLLR 229 (564)
Q Consensus 183 ~--~~~-~~g~~~~--~~~~~~iNG~~~~~----------~---~~-~----~~----------~~~~l~~~~G~~~rlr 229 (564)
. ... ....... ..-.+.|||..+.. + +. + .. ....+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 0000000 01245678876421 0 00 0 00 1235678889999999
Q ss_pred EEecCCCCeEEEEEcCceeEEEee-CCC----------cccceEecEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 230 IINAALNDELFFAIAGHNFTVVEV-DAV----------YTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 230 iiN~~~~~~~~~~l~gh~~~via~-DG~----------~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
|-|.. ...|+||||||.|+||+. +|. ++.|...||+.+.++.-+-+.|++++ ||-|.||||-
T Consensus 417 iqn~~-~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PGvW~~HCh~ 489 (536)
T PLN02792 417 FQNRE-KIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VGMWNLRSQF 489 (536)
T ss_pred EECCC-CCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CEEEeeeEcc
Confidence 99865 346789999999999975 222 23688999999999999999999999 7999999984
No 36
>PLN02604 oxidoreductase
Probab=99.28 E-value=7.8e-11 Score=128.25 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=132.4
Q ss_pred CeEEeecCCEEEEEEEeCCCC-CceeeeCC--CCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCCCCc-ceeEec
Q 008484 63 PTIYVREGDRVLVNVTNHAQY-NMSIHWHG--LKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQRG-TLWWHA 134 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG--~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~~~G-t~wYH~ 134 (564)
++|.+++|++.|+||.|.... ...++..| +.+.. .||.+. +....|.||||++..+++++.+| .||-..
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa---~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira 300 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE---ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTT 300 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE---eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEE
Confidence 489999999999999999754 33344444 44443 788543 34567999999999999844455 799886
Q ss_pred chhhh---h-cceeeeEEEeCCCC--CCCCCCCC----CCcEEEEeecc---------cccCHHHHHHhh--hccCCCCC
Q 008484 135 HIFWL---R-ATVYGAIVIMPKPG--SPFPFPQP----NREEVILLGEW---------WHTDVEEVEKQG--QKMGLPPN 193 (564)
Q Consensus 135 h~~~~---~-~Gl~G~iiV~~~~~--~~~~~~~~----~~e~~l~~~d~---------~~~~~~~~~~~~--~~~g~~~~ 193 (564)
..... . .+ + +|+...... ...+.... ..+....+... ............ ........
T Consensus 301 ~~~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (566)
T PLN02604 301 SVVSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVN 378 (566)
T ss_pred ecccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccC
Confidence 53222 1 22 2 333332211 00010000 00000000000 000000000000 00000000
Q ss_pred CCceEEEcCcCCCCC---------------CCCC-----------------------CCeeeEEEecCcEEEEEEEecCC
Q 008484 194 MSDAHTINGKPGPLF---------------PCSE-----------------------KHTFAMEVESGKTYLLRIINAAL 235 (564)
Q Consensus 194 ~~~~~~iNG~~~~~~---------------~~~~-----------------------~~~~~l~~~~G~~~rlriiN~~~ 235 (564)
....+.|||..+... -|.. .....+.++.|++|.+.|.|...
T Consensus 379 ~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~ 458 (566)
T PLN02604 379 GYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANT 458 (566)
T ss_pred CeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcc
Confidence 113577788754210 0000 01124788899999999999852
Q ss_pred -----CCeEEEEEcCceeEEEeeC-CCc-----------ccceEecEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008484 236 -----NDELFFAIAGHNFTVVEVD-AVY-----------TKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 294 (564)
Q Consensus 236 -----~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~ 294 (564)
...|+||||||+|+|++.+ |.+ ..|...|++.+.++..+-|.|++++ ||-|.||||..
T Consensus 459 ~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG~WlfHCHI~ 533 (566)
T PLN02604 459 MNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PGVWAFHCHIE 533 (566)
T ss_pred ccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-CeEeeEeecch
Confidence 3468999999999999986 432 1477889999999999999999999 79999999953
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.19 E-value=1.2e-09 Score=118.78 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=134.0
Q ss_pred EECCcCCCCeEEeecCCEEEEEEEeCCCCC-ceeeeCCCCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCCCC-c
Q 008484 55 TVNGRFPGPTIYVREGDRVLVNVTNHAQYN-MSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQR-G 128 (564)
Q Consensus 55 ~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~~~-G 128 (564)
++||+.-..+|.|++|++.|+||.|..... ..++..|....-.. .||.+. +....|.||||++..+++++.+ +
T Consensus 218 ~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~ 296 (574)
T PLN02191 218 KEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQ 296 (574)
T ss_pred ccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCC
Confidence 445543223799999999999999997533 33555454432221 788653 3356799999999999985445 5
Q ss_pred ceeEecchhhhh----cceeeeEEEe-CCCCCCCCC------CCCCC-----cEEE-EeecccccCHH-HH-HHhhhccC
Q 008484 129 TLWWHAHIFWLR----ATVYGAIVIM-PKPGSPFPF------PQPNR-----EEVI-LLGEWWHTDVE-EV-EKQGQKMG 189 (564)
Q Consensus 129 t~wYH~h~~~~~----~Gl~G~iiV~-~~~~~~~~~------~~~~~-----e~~l-~~~d~~~~~~~-~~-~~~~~~~g 189 (564)
.||-..-..... .++ +++-. .......+. +..+. ..-. .+......... .. ........
T Consensus 297 ~y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 297 NYYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CEEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc
Confidence 899876543321 232 33333 221110000 00000 0000 00000000000 00 00000000
Q ss_pred CC-CCCCceEEEcCcCCCCCC-----------------------------------CC--CCCeeeEEEecCcEEEEEEE
Q 008484 190 LP-PNMSDAHTINGKPGPLFP-----------------------------------CS--EKHTFAMEVESGKTYLLRII 231 (564)
Q Consensus 190 ~~-~~~~~~~~iNG~~~~~~~-----------------------------------~~--~~~~~~l~~~~G~~~rlrii 231 (564)
.. ......+.+||..+.... |. ....-.+.++.|+++.+=|.
T Consensus 375 ~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~ 454 (574)
T PLN02191 375 QNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQ 454 (574)
T ss_pred cceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEE
Confidence 00 000124667776541000 00 00112456777999999999
Q ss_pred ecC-----CCCeEEEEEcCceeEEEeeCC-Cc-----------ccceEecEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008484 232 NAA-----LNDELFFAIAGHNFTVVEVDA-VY-----------TKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 294 (564)
Q Consensus 232 N~~-----~~~~~~~~l~gh~~~via~DG-~~-----------~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~ 294 (564)
|.. ....|+||||||+|+|++..- .+ ..|...|++.+.++.-+-+.|++++ ||-|.||||..
T Consensus 455 n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG~Wl~HCHi~ 533 (574)
T PLN02191 455 NANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PGVWFFHCHIE 533 (574)
T ss_pred CCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CEEEEEecCch
Confidence 875 255788999999999997632 21 2577899999999999999999999 79999999954
Q ss_pred C
Q 008484 295 N 295 (564)
Q Consensus 295 ~ 295 (564)
.
T Consensus 534 ~ 534 (574)
T PLN02191 534 P 534 (574)
T ss_pred h
Confidence 3
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.10 E-value=6.2e-10 Score=98.94 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=71.4
Q ss_pred CeeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc-----------cceEecEEEECCCceEEEEEEeCC
Q 008484 214 HTFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-----------KPFTTEAILIAPGQTTNVLVQANQ 282 (564)
Q Consensus 214 ~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~v~l~pg~r~dv~v~~~~ 282 (564)
....+.++.|++++|+|.|.+ ...|+||||||.|+|++.++... .|..+|++.|.+|+++.+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 347899999999999999988 55888999999999999998863 578999999999999999999996
Q ss_pred CCceeEEEEeec
Q 008484 283 KPGRYFMAARPF 294 (564)
Q Consensus 283 ~pg~y~l~~~~~ 294 (564)
||.|.+|||..
T Consensus 111 -~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 -PGPWLFHCHIL 121 (138)
T ss_dssp -TEEEEEEESSH
T ss_pred -ceEEEEEEchH
Confidence 79999999954
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.04 E-value=1.1e-08 Score=110.74 Aligned_cols=226 Identities=18% Similarity=0.177 Sum_probs=129.5
Q ss_pred CeEEeecCCEEEEEEEeCCCCC-ceeeeCC--CCCCCCCCCCCCCC----ccccccCCCCeEEEEEEeCCCCc-ceeEec
Q 008484 63 PTIYVREGDRVLVNVTNHAQYN-MSIHWHG--LKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQRG-TLWWHA 134 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~-~~iH~HG--~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~~~~~~~~G-t~wYH~ 134 (564)
++|.|++|++.|+||.|..... ..++..| +.+.. .||... +....|.||||++.-+++++.+| .||.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa---~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE---AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE---eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 5899999999999999997543 3344444 44443 788532 34567999999999999954455 798865
Q ss_pred chh--h-h-hcceee-eEEEeCCCCC----CCCC-CCCCCcEEE------Eee-----cccccCHH--H----H-HH-hh
Q 008484 135 HIF--W-L-RATVYG-AIVIMPKPGS----PFPF-PQPNREEVI------LLG-----EWWHTDVE--E----V-EK-QG 185 (564)
Q Consensus 135 h~~--~-~-~~Gl~G-~iiV~~~~~~----~~~~-~~~~~e~~l------~~~-----d~~~~~~~--~----~-~~-~~ 185 (564)
... . . ..-+.| +|+-...... +.|. +....+... .+. ........ . + .. ..
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 373 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVY 373 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeee
Confidence 321 1 0 111122 2332222111 0011 000000000 000 00000000 0 0 00 00
Q ss_pred hccCC-CCCC--CceEEEcCcCCCC----------CCCCC-------C---------CeeeEEEecCcEEEEEEEecCCC
Q 008484 186 QKMGL-PPNM--SDAHTINGKPGPL----------FPCSE-------K---------HTFAMEVESGKTYLLRIINAALN 236 (564)
Q Consensus 186 ~~~g~-~~~~--~~~~~iNG~~~~~----------~~~~~-------~---------~~~~l~~~~G~~~rlriiN~~~~ 236 (564)
...+. ...+ .-.++|||..+.. ++.++ . ......++.+++|.+-|-|.. .
T Consensus 374 ~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~ 452 (596)
T PLN00044 374 LLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-T 452 (596)
T ss_pred eeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-C
Confidence 00000 0000 1246778776421 00000 0 233457777999999999865 4
Q ss_pred CeEEEEEcCceeEEEeeCC-----------CcccceEecEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 237 DELFFAIAGHNFTVVEVDA-----------VYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 237 ~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
..|+||||||.|.|++... +++.|...|++.+.+|.-+-|.|++|+ ||-|.||||-
T Consensus 453 ~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDN-PG~W~lHCH~ 519 (596)
T PLN00044 453 NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDN-AGIWNLRVEN 519 (596)
T ss_pred CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCC-CEEehhhccC
Confidence 5788999999999997633 233688899999999999999999999 7999999993
No 40
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=2.7e-07 Score=99.03 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=63.9
Q ss_pred eeEEEecCcEEEEEEEecCCC--CeEEEEEcCceeEEEeeC-CCc------------ccceEecEEEECCCceEEEEEEe
Q 008484 216 FAMEVESGKTYLLRIINAALN--DELFFAIAGHNFTVVEVD-AVY------------TKPFTTEAILIAPGQTTNVLVQA 280 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~--~~~~~~l~gh~~~via~D-G~~------------~~p~~~d~v~l~pg~r~dv~v~~ 280 (564)
-.++++-+..+.+=+-|.+.. ..|++|||||.|+|++.+ |+. ..|...||+.|.||.-.-+.|.+
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 356888888888888888733 345679999999999983 322 24677899999999999999999
Q ss_pred CCCCceeEEEEeec
Q 008484 281 NQKPGRYFMAARPF 294 (564)
Q Consensus 281 ~~~pg~y~l~~~~~ 294 (564)
++ ||.|.||||-.
T Consensus 510 dN-PG~W~~HCHie 522 (563)
T KOG1263|consen 510 DN-PGVWLMHCHIE 522 (563)
T ss_pred CC-CcEEEEEEecH
Confidence 99 79999999953
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.71 E-value=7.4e-08 Score=82.50 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=68.8
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEe
Q 008484 439 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 518 (564)
Q Consensus 439 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 518 (564)
.+++.++.|+.|++.+.|.. ..++.+|.||...---...+|. .... .-.|.||+....+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~--------~~~~-------~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV--------PGVT-------QCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG--------TTTS-------GSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc--------cccc-------ceeEEeecceeeeEee
Confidence 57899999999999999975 6789999999753100000000 0000 1258899999999999
Q ss_pred cC-ceeeEEEeechhchhcccEEEEEEecC
Q 008484 519 DN-PGVWFMHCHLELHTGWGLKTAFAVEDG 547 (564)
Q Consensus 519 dn-pG~wl~HCHil~H~d~GM~~~~~V~~~ 547 (564)
+. +|.|.||||...|...||.+.+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999763
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.55 E-value=9.2e-07 Score=76.06 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=53.9
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhcc
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRAT 142 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~G 142 (564)
+.|++++||+| +++|....++++.+.|.... ..+...+.||++++|.|+. +|+|-|+|-.| ...|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~---------~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL---------SHKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc---------cccccccCCCCEEEEEecC---CEEEEEEcCCC-ccCC
Confidence 78999999985 45688778888876543210 0111347899999999963 89999999833 2379
Q ss_pred eeeeEEEe
Q 008484 143 VYGAIVIM 150 (564)
Q Consensus 143 l~G~iiV~ 150 (564)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.48 E-value=2.4e-07 Score=77.91 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=47.9
Q ss_pred cCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhh
Q 008484 59 RFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFW 138 (564)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~ 138 (564)
++--..|++++|+.|+|+++|.....+.+...++... ..|.||++.++.|.. .++|+|=|+|..+.
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC
Confidence 4422599999999999999999888777666653322 468999999999986 89999999999766
Q ss_pred hhcceeeeEEE
Q 008484 139 LRATVYGAIVI 149 (564)
Q Consensus 139 ~~~Gl~G~iiV 149 (564)
. |.|-|+|
T Consensus 97 ~---m~G~liV 104 (104)
T PF13473_consen 97 N---MKGTLIV 104 (104)
T ss_dssp T---TB-----
T ss_pred c---ceecccC
Confidence 2 7777765
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.29 E-value=3.4e-06 Score=70.09 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCC--ccccccCCCCeEEEEEEeCCCCcceeEecchhhhh
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAY--ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLR 140 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~--~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~ 140 (564)
..|++++||+|+ ++|....++++.++........ .+..+. .+...+.||+++++.|.. +|+|.|+|. .+..
T Consensus 17 ~~i~v~~G~~V~--~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTVE--WVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEEE--EEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Cccc
Confidence 689999999865 5588777888777654322110 010001 122457899999998853 999999998 3333
Q ss_pred cceeeeEEEe
Q 008484 141 ATVYGAIVIM 150 (564)
Q Consensus 141 ~Gl~G~iiV~ 150 (564)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 45
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.11 E-value=1.6e-05 Score=63.64 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=52.8
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhcc
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRAT 142 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~G 142 (564)
+.|++++||+|. +.|....++++++.........+. ...+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~~-------~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAALK-------GPMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEEE--EEECCCCCccEEecCCCCcccccc-------ccccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 789999999975 578887888888764321111111 12357888888777 46999999999876 4
Q ss_pred eeeeEEEe
Q 008484 143 VYGAIVIM 150 (564)
Q Consensus 143 l~G~iiV~ 150 (564)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999885
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.10 E-value=8.5e-06 Score=67.73 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=53.8
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCC-CCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhc
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWAD-GPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRA 141 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~ 141 (564)
+.|++++||+|+ +.|....++++.+---........+ .........+.||+++++.|+ ++|+|.|+|.. +..+
T Consensus 17 ~~i~V~~G~tV~--~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTVT--FVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEEE--EEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEEE--EEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 699999999865 6666666777665331110000000 000112235789999999997 69999999994 4448
Q ss_pred ceeeeEEEe
Q 008484 142 TVYGAIVIM 150 (564)
Q Consensus 142 Gl~G~iiV~ 150 (564)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 47
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.03 E-value=0.0001 Score=65.79 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=73.0
Q ss_pred EEEECCcCCC-CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCC-C---CCCCCCC----CCcc-----ccccCCCCeEE
Q 008484 53 IVTVNGRFPG-PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQY-R---NGWADGP----AYIT-----QCPIKTGNSYT 118 (564)
Q Consensus 53 ~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~-~---~~~~DGv----~~~~-----~~~i~PG~~~~ 118 (564)
.+-+||+..| ++|.+.+|=+|.|+|+|....+|++-.--...+ + ....||. +|.+ ...|.+|++..
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 3678998888 899999999999999999988877554111110 0 1124662 1222 13467888866
Q ss_pred EEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCC
Q 008484 119 YDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPG 154 (564)
Q Consensus 119 y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~ 154 (564)
-.|.. -++|+|||-|-.-++. +||+|-+||...-.
T Consensus 154 g~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 154 GWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred EEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 55654 7899999999998877 99999999997654
No 48
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.02 E-value=2.3e-05 Score=69.79 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=59.6
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecC---C--CEEE
Q 008484 439 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPT---G--GWTA 513 (564)
Q Consensus 439 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~ 513 (564)
.+.+.++.|+.|++.+.|.. ....|.|-||.+.-..-. .+..+ . .+..-..-.+|+ + ++..
T Consensus 51 ~P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~~------~p~md--G----~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 51 NPTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYPY------MPGMD--G----LGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCcccc------ccccC--C----CCccccCcccCCCCCCccceeE
Confidence 36688999999999999975 235677766643210000 00000 0 011111112222 2 2467
Q ss_pred EEEEecCceeeEEEeechhchhcccEEEEEEe
Q 008484 514 IRFRADNPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 514 irf~adnpG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
+.|+++.+|.+.||||+..|...||.+.+.|.
T Consensus 117 ~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 88888899999999999999999999999873
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=3.1e-05 Score=83.06 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=70.2
Q ss_pred EeecCCcee--eEEEECCcCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEE
Q 008484 43 NVSRLCHAK--PIVTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 120 (564)
Q Consensus 43 ~~~~~g~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~ 120 (564)
.+.++|... .+....-.|--+.|+|++||.|+++|+|.....-.+ ||+.+... |+ ..-+.||++.+..
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svt 602 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVT 602 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEE
Confidence 355677444 444555566436899999999999999965422223 55554332 11 1357899999999
Q ss_pred EEeCCCCcceeEecchh--hhhcceeeeEEEeCC
Q 008484 121 FNVTGQRGTLWWHAHIF--WLRATVYGAIVIMPK 152 (564)
Q Consensus 121 ~~~~~~~Gt~wYH~h~~--~~~~Gl~G~iiV~~~ 152 (564)
|++ +++|+|||||..- ....+|.|.|+|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 998 8999999999873 333699999999874
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.94 E-value=8.7e-05 Score=67.76 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=75.4
Q ss_pred eEEEECCcCCC-CeEEeecCCEEEEEEEeCCCCCceeeeC--CCCCC--CCCCCCCCC----C-----ccccccCCCCeE
Q 008484 52 PIVTVNGRFPG-PTIYVREGDRVLVNVTNHAQYNMSIHWH--GLKQY--RNGWADGPA----Y-----ITQCPIKTGNSY 117 (564)
Q Consensus 52 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~H--G~~~~--~~~~~DGv~----~-----~~~~~i~PG~~~ 117 (564)
+.+-|||..-| ++|.+.+|-+|.|+|+|....+|++-.- +-.++ ..-+.||.. + .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47789998877 7999999999999999998777663322 21111 112356511 1 123468899999
Q ss_pred EEEEEeCCCCcceeEecchhhhh-cceeeeEEEeCCCCC
Q 008484 118 TYDFNVTGQRGTLWWHAHIFWLR-ATVYGAIVIMPKPGS 155 (564)
Q Consensus 118 ~y~~~~~~~~Gt~wYH~h~~~~~-~Gl~G~iiV~~~~~~ 155 (564)
.-.|.. -++|.|||-|-..++. +||++-|+|.+.-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877753 6799999999998887 899999999976543
No 51
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.90 E-value=5.6e-05 Score=68.75 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=76.9
Q ss_pred ceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEE
Q 008484 438 ATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFR 517 (564)
Q Consensus 438 ~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 517 (564)
...++.++.|+++.|.|.|.+ ....+.|++.||+|+||+... ....|...|++.|.+|..+-|.++
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG------------~~v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADG------------VPVEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETT------------EEEEEEEESBEEE-TTEEEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeecc------------ccccccccceEEeeCCeEEEEEEE
Confidence 357789999999999999976 456899999999999999841 123377889999999999999999
Q ss_pred ecC-ceeeEEEe----echhchhcccEEEEEEe
Q 008484 518 ADN-PGVWFMHC----HLELHTGWGLKTAFAVE 545 (564)
Q Consensus 518 adn-pG~wl~HC----Hil~H~d~GM~~~~~V~ 545 (564)
++. +|.|.+++ +...+...|+..-+++-
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 987 99999999 66777888887776653
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.62 E-value=0.0003 Score=59.73 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=49.5
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeee-CCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhc
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHW-HGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRA 141 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~ 141 (564)
..|+|++||+|++...|. ++++.+ .+.. .+|... ..-.+|++++++| +++|+|-|+|-.| ...
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-ccC
Confidence 689999999988877765 455544 2211 122211 1123566666666 5699999999932 337
Q ss_pred ceeeeEEEeCCC
Q 008484 142 TVYGAIVIMPKP 153 (564)
Q Consensus 142 Gl~G~iiV~~~~ 153 (564)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999999864
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.53 E-value=0.00048 Score=59.09 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=53.6
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhcc
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRAT 142 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~G 142 (564)
-.|+|++||+ |++.|.....++++.-+... + +|.. .....+|+++++.|. ++|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~---~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD---P--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC---c--cccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 3899999999 56778877788877655541 1 2221 134455688888775 4999999998653 269
Q ss_pred eeeeEEEeC
Q 008484 143 VYGAIVIMP 151 (564)
Q Consensus 143 l~G~iiV~~ 151 (564)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.42 E-value=0.00074 Score=56.02 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=57.0
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|++|+|+ |.+ ...|.+.++...+..- .. ........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAG-----VK---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccc-----hh---------hhcccccccccccCCCCEEEEEeCC-
Confidence 45788999999887 432 4678777654322110 00 0011123466788999988887665
Q ss_pred CceeeEEEeechhchhcccEEEEEEe
Q 008484 520 NPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 520 npG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
||.|.|||- .|...||.+.+.|.
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.28 E-value=0.0017 Score=55.10 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=49.6
Q ss_pred CeEEeecCCEEEEEEEeC-CCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhc
Q 008484 63 PTIYVREGDRVLVNVTNH-AQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRA 141 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~-l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~ 141 (564)
..|+|++||+|+ ++|+ ...++++..-+ ...| | .......+|+++++.|. ++|+|-|+|-.| ...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999977 5543 34667765311 0111 1 11123578999999984 699999999865 236
Q ss_pred ceeeeEEEe
Q 008484 142 TVYGAIVIM 150 (564)
Q Consensus 142 Gl~G~iiV~ 150 (564)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 899999985
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.08 E-value=0.0027 Score=54.93 Aligned_cols=60 Identities=18% Similarity=0.455 Sum_probs=48.3
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|+.|+|++.|.+ ..+|.+-++++.+ ...+++|....++|+++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECC
Confidence 3467899999999999965 4677777665421 23788999999999999
Q ss_pred CceeeEEEeec
Q 008484 520 NPGVWFMHCHL 530 (564)
Q Consensus 520 npG~wl~HCHi 530 (564)
-||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999954
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.61 E-value=0.011 Score=49.05 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=54.0
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEe
Q 008484 439 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 518 (564)
Q Consensus 439 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 518 (564)
...+.++.|++|.|+..+ ...|.+.+ ...+ +......... +..-.+..+.+|....+.|.
T Consensus 16 P~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp SSEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE-
T ss_pred CCEEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC-
Confidence 345788999999998764 34555443 2211 1000000000 01115667888888777776
Q ss_pred cCceeeEEEeechhchhcccEEEEEEe
Q 008484 519 DNPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 519 dnpG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
.+|.|.|+|- - |...||-+.+.|+
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 5 9999999999884
No 58
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.029 Score=49.25 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=63.7
Q ss_pred cCCCCeEEeecCCEEEEEEEeCCCCC-----------ceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCC
Q 008484 59 RFPGPTIYVREGDRVLVNVTNHAQYN-----------MSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQR 127 (564)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~~-----------~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~ 127 (564)
.+++-.+.++.|++++..+.|...-- ...-.|...... +++- ......+.||++.+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 45667899999999999999985311 111112222221 2231 1223679999999999998 789
Q ss_pred cceeEecchhhhh-cceeeeEEEeC
Q 008484 128 GTLWWHAHIFWLR-ATVYGAIVIMP 151 (564)
Q Consensus 128 Gt~wYH~h~~~~~-~Gl~G~iiV~~ 151 (564)
|.|-+-|-..+++ .||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999999 89999998864
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.38 E-value=0.016 Score=62.77 Aligned_cols=77 Identities=18% Similarity=0.383 Sum_probs=57.3
Q ss_pred EEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCc
Q 008484 442 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 521 (564)
Q Consensus 442 ~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 521 (564)
+.++.|+.|++.+.|.....+..|-|-+-++.. -+.+.||....+.|+++.|
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred EEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCCC
Confidence 678999999999999643336677777744421 1366788999999999999
Q ss_pred eeeEEEeechhch-hcccEEEEEEec
Q 008484 522 GVWFMHCHLELHT-GWGLKTAFAVED 546 (564)
Q Consensus 522 G~wl~HCHil~H~-d~GM~~~~~V~~ 546 (564)
|.|.+||...-|. +.+|...+.|++
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEEe
Confidence 9999999873322 238888888764
No 60
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.20 E-value=0.02 Score=47.92 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=42.1
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|+.+.+++.|.+ ...|-|.+-+. .-...+++|+...+.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNND---SRPHEFVIPDL----------------------------GISKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-S---SS-EEEEEGGG----------------------------TEEEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECC---CCcEEEEECCC----------------------------ceEEEECCCCEEEEEEcCC
Confidence 3578899999999999975 33455544441 1235889999999999999
Q ss_pred CceeeEEEeechhchhccc
Q 008484 520 NPGVWFMHCHLELHTGWGL 538 (564)
Q Consensus 520 npG~wl~HCHil~H~d~GM 538 (564)
.||.|-|+|-+-.+ +.|.
T Consensus 84 ~~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp S-EEEEEB-SSS-T-TB--
T ss_pred CCEEEEEEcCCCCc-ceec
Confidence 99999999995554 3554
No 61
>PRK02710 plastocyanin; Provisional
Probab=95.63 E-value=0.048 Score=46.82 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=49.6
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecC
Q 008484 441 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 520 (564)
Q Consensus 441 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 520 (564)
.+.++.|++|+|+ |.+ ...|.+.+.+... +. .+| ..+.+|....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~~--------------~~~-~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------LS--------------HKD-LAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------cc--------------ccc-cccCCCCEEEEEecC--
Confidence 4678899999986 432 4678776542210 00 011 346777777766664
Q ss_pred ceeeEEEeechhchhcccEEEEEEe
Q 008484 521 PGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 521 pG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999996 89999999999873
No 62
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=95.26 E-value=0.091 Score=44.65 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=55.8
Q ss_pred CeEEeecC-CEEEEEEEeCCCCCceeeeCCCCCCCCCC--------------CCCCCC-----cc-ccccCCCCeEEEEE
Q 008484 63 PTIYVREG-DRVLVNVTNHAQYNMSIHWHGLKQYRNGW--------------ADGPAY-----IT-QCPIKTGNSYTYDF 121 (564)
Q Consensus 63 P~i~v~~G-d~v~v~l~N~l~~~~~iH~HG~~~~~~~~--------------~DGv~~-----~~-~~~i~PG~~~~y~~ 121 (564)
..|.|+++ ..|.|+|+|....+-..--|-+-.....- .|=+|. +. ..-|.|||+.+.+|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 57999985 79999999986544333233211111000 111221 11 23479999999999
Q ss_pred EeCC-CCcc-eeEecchhhhhcceeeeEE
Q 008484 122 NVTG-QRGT-LWWHAHIFWLRATVYGAIV 148 (564)
Q Consensus 122 ~~~~-~~Gt-~wYH~h~~~~~~Gl~G~ii 148 (564)
+++. ++|. |-|.|...++...|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9842 6786 9999999888878888775
No 63
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.93 E-value=0.094 Score=48.24 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=59.8
Q ss_pred ceEEEcCcCCCCCCCCCCCeeeEEEecCcEEEEEEEecCCCCeEEEEEcCc-----eeEEEeeCCCcc-c----ceEecE
Q 008484 196 DAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGH-----NFTVVEVDAVYT-K----PFTTEA 265 (564)
Q Consensus 196 ~~~~iNG~~~~~~~~~~~~~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh-----~~~via~DG~~~-~----p~~~d~ 265 (564)
+.+-+||... ....+-+.+|-+|.++++|.+ ...|+|-+-.. ....++.||..+ . +-....
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~-~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~ 144 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQE-SLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTS 144 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCC-CCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCcccc
Confidence 3677788653 447899999999999999997 45555655421 123567777654 1 111223
Q ss_pred EEECCCceEEEEEEeCCCCceeEEEEee
Q 008484 266 ILIAPGQTTNVLVQANQKPGRYFMAARP 293 (564)
Q Consensus 266 v~l~pg~r~dv~v~~~~~pg~y~l~~~~ 293 (564)
--|.+|+++...+..-. +|.|||.|.-
T Consensus 145 ~GI~~G~s~~~~~~~l~-aG~YwlvC~i 171 (196)
T PF06525_consen 145 NGISSGQSASGVYNDLP-AGYYWLVCGI 171 (196)
T ss_pred CCccCCceeeEEEccCC-CceEEEEccC
Confidence 35668999998775444 7999999963
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.18 Score=44.46 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=61.3
Q ss_pred EEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecCc
Q 008484 442 SKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADNP 521 (564)
Q Consensus 442 ~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 521 (564)
..++.|++++.++.|.. .-.|=|=+- ++....+ .+.-. ....-..---..++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~--~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE--HVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCcc---cceEEEecc---Cccccch--hHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 45678999999999865 333433332 1111110 00000 0000000123468899999999999999999
Q ss_pred eeeEEEeechhchhcccEEEEEEe
Q 008484 522 GVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 522 G~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
|.+-|-|-|-+|-+.||-.-+.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999874
No 65
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.33 E-value=0.26 Score=41.88 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCCEEEEEEEecCceeeEEEeechhchhcccEEEEEEecCCC
Q 008484 508 TGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDGPG 549 (564)
Q Consensus 508 ~~g~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~~~ 549 (564)
++.. +.++++.+|.+-|+|= .|...||-+.+.|.++..
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPA 91 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCc
Confidence 3444 4455578999999998 999999999999987533
No 66
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.33 E-value=0.48 Score=48.74 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=53.7
Q ss_pred cCCCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCC-CccccccCCCCeEEEEEEeCCCCcceeEecchh
Q 008484 59 RFPGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPA-YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIF 137 (564)
Q Consensus 59 ~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~-~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~ 137 (564)
++--..+.|+.|+ +.+.|+|....++.+-.- +|+. ......|.||.+.++.+++ ++|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 4433589999996 899999998666442211 1110 0012478999999988776 699999999432
Q ss_pred hhhcceeeeEEEeCCC
Q 008484 138 WLRATVYGAIVIMPKP 153 (564)
Q Consensus 138 ~~~~Gl~G~iiV~~~~ 153 (564)
..+.|.|+|....
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 3358899998653
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.92 E-value=0.68 Score=39.73 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=49.0
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.++.|+.++|++.+. .-.|.|.+.+..+++ .+-||+.-.+.+++++ ||.|.++|.-+.
T Consensus 46 ~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~-~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE--DVIHSFWIPELGIKM----------------DAIPGRTNSVTFTPDK-PGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEES--SS-EEEEETTCTEEE----------------EEBTTCEEEEEEEESS-SEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcC--CccccccccccCccc----------------ccccccceeeeeeecc-CCcEEEcCcccc
Confidence 579999999999999985 467778887665443 5568999999999988 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 3
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.70 E-value=0.49 Score=40.60 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=49.2
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchh--hhh
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIF--WLR 140 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~--~~~ 140 (564)
+.|.+++|+.|++++++.. .+| |..++.. | -+.-+.||+.....|++ +++|+|++.|..- ...
T Consensus 46 ~~l~lp~g~~v~~~ltS~D----ViH--sf~ip~~----~----~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED----VIH--SFWIPEL----G----IKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEESS----S-E--EEEETTC----T----EEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcCC----ccc--ccccccc----C----cccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 6899999999999999963 222 3322211 0 02356799999999998 8899999999862 222
Q ss_pred cceeeeEEE
Q 008484 141 ATVYGAIVI 149 (564)
Q Consensus 141 ~Gl~G~iiV 149 (564)
..|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 567776665
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.22 E-value=1.2 Score=37.71 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=47.2
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|++|.|+.++. ...|-. .+.+.+.|+.. .....+|....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d----~~~HnV---------~s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE----GGGHNV---------VSDGDGDLDES---------------ERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCC----CCCEEE---------EECCCCCcccc---------------ccccCCCCEEEEEe--c
Confidence 457889999999986541 234443 22222233210 11234555555544 6
Q ss_pred CceeeEEEeechhchhcccEEEEEEe
Q 008484 520 NPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 520 npG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
.||.|-|+|= .|...||-+.+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999997 89999999999873
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.97 E-value=1.3 Score=41.74 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=56.5
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecch--hhhh
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--FWLR 140 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~--~~~~ 140 (564)
+.|.+..|+.|++++++.. .+ ||..++.- |+ +.-+-||..-+..|++ +++|+|...|.. +...
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999864 22 55555432 11 2456799999999987 889999999886 2222
Q ss_pred cceeeeEEEeCCC
Q 008484 141 ATVYGAIVIMPKP 153 (564)
Q Consensus 141 ~Gl~G~iiV~~~~ 153 (564)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 6788888888754
No 71
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=91.54 E-value=1.3 Score=35.17 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=44.8
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|++|.|+ |.+ ...|..+.+...+ +..+ +. ...+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 45778899999985 432 4678887653221 0000 00 11234554444 5667
Q ss_pred CceeeEEEeechhchhcccEEEEEEe
Q 008484 520 NPGVWFMHCHLELHTGWGLKTAFAVE 545 (564)
Q Consensus 520 npG~wl~HCHil~H~d~GM~~~~~V~ 545 (564)
.||.|.|||=+ |- +|-+.+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999976 54 488888763
No 72
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=86.78 E-value=1.1 Score=46.31 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=51.8
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhh--h
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWL--R 140 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~--~ 140 (564)
-++.|++||.|++.++|-....-.+|..-+.+. |+. ..+.|-++..|.|.+ +.+|.+||.|--.-. .
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~thgfv~p~~------~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTHGFVIPNY------GVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccceeeeccC------ceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 367888999998888887654444432222221 221 457889999999998 889999998764322 2
Q ss_pred cceeeeEEEe
Q 008484 141 ATVYGAIVIM 150 (564)
Q Consensus 141 ~Gl~G~iiV~ 150 (564)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5567777776
No 73
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.72 E-value=6.4 Score=31.16 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=37.0
Q ss_pred EEEEEEEecCCCCeEEEEEc-CceeE--EEeeCCCccc--------ceEecEEEECCCceEEEEEEeCCC---CceeEEE
Q 008484 225 TYLLRIINAALNDELFFAIA-GHNFT--VVEVDAVYTK--------PFTTEAILIAPGQTTNVLVQANQK---PGRYFMA 290 (564)
Q Consensus 225 ~~rlriiN~~~~~~~~~~l~-gh~~~--via~DG~~~~--------p~~~d~v~l~pg~r~dv~v~~~~~---pg~y~l~ 290 (564)
.+.|++.|.+ .....|.+. |+.+. |...+|..+- -+......|.||+...+-.+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3567888888 455556654 55444 4445666551 234568999999999999998875 5999885
Q ss_pred E
Q 008484 291 A 291 (564)
Q Consensus 291 ~ 291 (564)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 74
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=86.25 E-value=7.3 Score=35.47 Aligned_cols=98 Identities=10% Similarity=0.154 Sum_probs=57.7
Q ss_pred ceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCC-CCCCCCCCCCCCCCCCcceeeE------ecCCC
Q 008484 438 ATRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGN-FDPVKYPANYNLVDPIERNTAA------VPTGG 510 (564)
Q Consensus 438 ~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~-~~~~~~~~~~~~~~p~~rDTv~------vp~~g 510 (564)
+...+.++.|-.|.+++.|.. ..+| .+-++..+... ..+....+..-+. .--++-. +..|.
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~--~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIIN--STGATTSIYYGNGISSGH 150 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEe--ecccccCccccccccccc
Confidence 456778999999999999964 4444 34444433211 0000000000000 0001111 22344
Q ss_pred EEEEEEEecCceeeEEEeechhchhcccEEEEEEecC
Q 008484 511 WTAIRFRADNPGVWFMHCHLELHTGWGLKTAFAVEDG 547 (564)
Q Consensus 511 ~~~irf~adnpG~wl~HCHil~H~d~GM~~~~~V~~~ 547 (564)
...+-|..--||.+-+=|-+.-|.+.||-..+.|-..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 5555666668999999999999999999999987643
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.53 E-value=11 Score=36.74 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=57.5
Q ss_pred CeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchh-hhh-
Q 008484 63 PTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIF-WLR- 140 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~-~~~- 140 (564)
+.|.+..|..|+++++-.. .+ ||..++..+ .+.-+-||...++.+++ +++|+|.-+|+.- +..
T Consensus 137 n~l~lPv~~~V~f~ltS~D----Vi--HsF~IP~l~--------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD----VI--HSFWIPQLG--------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEech----hc--eeEEecCCC--------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 8999999999999998772 22 344443221 12346789999999987 8999999999863 333
Q ss_pred cceeeeEEEeCCCC
Q 008484 141 ATVYGAIVIMPKPG 154 (564)
Q Consensus 141 ~Gl~G~iiV~~~~~ 154 (564)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998764
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.76 E-value=63 Score=34.16 Aligned_cols=176 Identities=16% Similarity=0.285 Sum_probs=101.6
Q ss_pred EEeecCCE--EEEEEEeCCCC--CceeeeCCCCCCC-CCCCCCCCCccccccCCCCeEEEEEEe----CCCCcceeEecc
Q 008484 65 IYVREGDR--VLVNVTNHAQY--NMSIHWHGLKQYR-NGWADGPAYITQCPIKTGNSYTYDFNV----TGQRGTLWWHAH 135 (564)
Q Consensus 65 i~v~~Gd~--v~v~l~N~l~~--~~~iH~HG~~~~~-~~~~DGv~~~~~~~i~PG~~~~y~~~~----~~~~Gt~wYH~h 135 (564)
+.+.++++ +.|++.|+-.. ...+-.-|+.--- ..+.+|--.++...+.||++.+....+ +..+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 56667765 66788888643 3445555543211 122466667888899999999988887 2235665
Q ss_pred hhhhhcceeeeEEEeCCCCCCCCCCCCCCcEEEEeecccccCHHHHHHhhhccCCCCCCCceEEEcCcCCCCCCCCCCCe
Q 008484 136 IFWLRATVYGAIVIMPKPGSPFPFPQPNREEVILLGEWWHTDVEEVEKQGQKMGLPPNMSDAHTINGKPGPLFPCSEKHT 215 (564)
Q Consensus 136 ~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~ 215 (564)
-..|+-.... ...+|.++-+.-- | .+....-+-||.
T Consensus 353 ---------nv~I~A~s~s------~v~~e~~lki~~~---------------g--~~~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS------GVTRELPLKIKNT---------------G--SYNELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc------cceeeeeEEEEec---------------c--ccceeEEccCCc------------
Confidence 3333322211 1234444444210 0 000112233443
Q ss_pred eeEEEecCc--EEEEEEEecCCCC--eEEEEEcCceeEEEeeCCCcccceEecEEEECCCce--EEEEEEeCC--CCcee
Q 008484 216 FAMEVESGK--TYLLRIINAALND--ELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQT--TNVLVQANQ--KPGRY 287 (564)
Q Consensus 216 ~~l~~~~G~--~~rlriiN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r--~dv~v~~~~--~pg~y 287 (564)
..+++++|+ .++++|-|.|... ...+.+++-+=+-+.+|+..+ + .|.||+| +++.++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 568899996 7899999999554 445666665556677777532 2 3455555 444555554 35899
Q ss_pred EEEEeecCC
Q 008484 288 FMAARPFND 296 (564)
Q Consensus 288 ~l~~~~~~~ 296 (564)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988876544
No 77
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.09 E-value=5.7 Score=37.42 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=54.8
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
.-+.++.|+.|++.+.+. +..|.|.+-+ .+ --..+-||-...+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~-------~~---------------------~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPE-------LG---------------------GKIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccc-------cC---------------------ceEEecCCcEEEEEEEeC
Confidence 457889999999999874 4455554432 21 112455788899999999
Q ss_pred CceeeEEEeechhch-hcccEEEEEEecCC
Q 008484 520 NPGVWFMHCHLELHT-GWGLKTAFAVEDGP 548 (564)
Q Consensus 520 npG~wl~HCHil~H~-d~GM~~~~~V~~~~ 548 (564)
.||.+...|-..-.. ...|...++|.+++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECHH
Confidence 999999999983322 37788888877643
No 78
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.53 E-value=9.8 Score=32.56 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=51.1
Q ss_pred eeEEEecC-cEEEEEEEecCCCC----eEEEEEc-CceeEEEee-------CCCcccc----eEecEEEECCCceEEEEE
Q 008484 216 FAMEVESG-KTYLLRIINAALND----ELFFAIA-GHNFTVVEV-------DAVYTKP----FTTEAILIAPGQTTNVLV 278 (564)
Q Consensus 216 ~~l~~~~G-~~~rlriiN~~~~~----~~~~~l~-gh~~~via~-------DG~~~~p----~~~d~v~l~pg~r~dv~v 278 (564)
..|+|+++ +.+.+.|-|.|... .|++-|- .-.++-++. |-.|+.+ .-..+=+|.+||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 57899984 89999999998433 3444332 122222222 3345532 234567999999999999
Q ss_pred EeCC-CCc-eeEEEEe
Q 008484 279 QANQ-KPG-RYFMAAR 292 (564)
Q Consensus 279 ~~~~-~pg-~y~l~~~ 292 (564)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9873 356 6999996
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.82 E-value=4.2 Score=32.23 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=30.9
Q ss_pred eEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCC---ccccccCCCCeEEEEEEeCCC---CcceeE
Q 008484 64 TIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAY---ITQCPIKTGNSYTYDFNVTGQ---RGTLWW 132 (564)
Q Consensus 64 ~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~~~~~i~PG~~~~y~~~~~~~---~Gt~wY 132 (564)
+|+..-|++..+.|.|..... + -.|++|-.. +.+..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 566666666666666553211 1 135777543 345679999999999998433 688853
No 80
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=79.31 E-value=11 Score=32.48 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=44.7
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecC
Q 008484 441 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 520 (564)
Q Consensus 441 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 520 (564)
.++++.|++|+|+-.. ...|..+.=+-. . |..-+++....+..... .++-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~---------~--------------~~g~~~~~~~~~~s~~~--Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM---------D--------------PEGSGTLKAGINESFTH--TFET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC---------C--------------cccccccccCCCcceEE--Eecc
Confidence 3678899999999643 235554432221 1 11112222222334433 4445
Q ss_pred ceeeEEEeechhchhcccEEEEEEec
Q 008484 521 PGVWFMHCHLELHTGWGLKTAFAVED 546 (564)
Q Consensus 521 pG~wl~HCHil~H~d~GM~~~~~V~~ 546 (564)
||.|.|.| ..|...||-+.+.|.+
T Consensus 105 ~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEe--ccCCCCCcEEEEEeCC
Confidence 99999999 4699999999998853
No 81
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=74.85 E-value=10 Score=36.92 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=48.7
Q ss_pred eeeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008484 215 TFAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPF 294 (564)
Q Consensus 215 ~~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~ 294 (564)
...+.+..|++|+|++.... -.|+|.|.+-.. .+..-||...+..+++++ +|.|..+|..+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D--ViHsF~IP~l~~----------------k~d~iPG~~~~~~~~~~~-~G~Y~g~Cae~ 196 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD--VIHSFWIPQLGG----------------KIDAIPGMTTELWLTANK-PGTYRGICAEY 196 (247)
T ss_pred cceEEEeCCCeEEEEEEech--hceeEEecCCCc----------------eeeecCCceEEEEEecCC-CeEEEEEcHhh
Confidence 35789999999999998764 455566554443 345668999999999999 69999999976
Q ss_pred CC
Q 008484 295 ND 296 (564)
Q Consensus 295 ~~ 296 (564)
..
T Consensus 197 CG 198 (247)
T COG1622 197 CG 198 (247)
T ss_pred cC
Confidence 53
No 82
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=73.90 E-value=3.1 Score=32.43 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=26.6
Q ss_pred eecCC--EEEEEEEeCCCCC---ceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEe--C--CCCccee
Q 008484 67 VREGD--RVLVNVTNHAQYN---MSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNV--T--GQRGTLW 131 (564)
Q Consensus 67 v~~Gd--~v~v~l~N~l~~~---~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~--~--~~~Gt~w 131 (564)
|.+|+ ++.++|+|....+ ..+-+- .+.+|.......+-..|+||++.+..|.+ + ..+|+|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 34565 4567778886543 222221 14455522111222369999999888887 2 2368764
No 83
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=70.03 E-value=25 Score=26.56 Aligned_cols=65 Identities=11% Similarity=0.288 Sum_probs=39.1
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEe
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 292 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~ 292 (564)
..+++++|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+.+.+ +|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 57899999999988877764 223566666665331111111 112333445566666 699999874
No 84
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=64.76 E-value=17 Score=29.59 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=41.1
Q ss_pred EEecCcEEEEEEE--ecCCCCeEEEEEcCceeEEEeeCCCcccceEecEE-EECCCceEEEEEEeCCCC--ceeEEEEee
Q 008484 219 EVESGKTYLLRII--NAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI-LIAPGQTTNVLVQANQKP--GRYFMAARP 293 (564)
Q Consensus 219 ~~~~G~~~rlrii--N~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v-~l~pg~r~dv~v~~~~~p--g~y~l~~~~ 293 (564)
.-++||++.+|++ +... ......-....+.|..-+|..+ ..... .......++..+..++.+ |.|.|+...
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4689999999999 6652 1110111122355555556533 11222 346788899989888764 999999875
No 85
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.77 E-value=42 Score=26.78 Aligned_cols=63 Identities=10% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCeEEee---cCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEe
Q 008484 62 GPTIYVR---EGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH 133 (564)
Q Consensus 62 gP~i~v~---~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH 133 (564)
.|.+.++ ....|+|+|.|....+..+........ .+ ...+..|+||++.+..|.+ ...--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~--~~~~~~v~ag~~~~~~w~l--~~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GG--GPWTYTVAAGQTVSLTWPL--AASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CC--CCEEEEECCCCEEEEEEee--cCCCCcEE
Confidence 3555554 235899999999877777665542221 11 1234679999999999987 23334554
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=63.17 E-value=68 Score=25.60 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=40.1
Q ss_pred EEecCcEE--EEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEE-EECCCceEEEEEEeCC-CCceeEEEEee
Q 008484 219 EVESGKTY--LLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAI-LIAPGQTTNVLVQANQ-KPGRYFMAARP 293 (564)
Q Consensus 219 ~~~~G~~~--rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v-~l~pg~r~dv~v~~~~-~pg~y~l~~~~ 293 (564)
.+.+|+.+ .+.|.|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+|.|.|.+.-
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 56777754 588899986654444433 23455433 33444 7899998888887655 46999988764
No 87
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=56.29 E-value=37 Score=28.30 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=43.8
Q ss_pred EEEEEeCCCCCceeeeCCCCCCCCCCCC-CCCCccccccCCCCeEEEEEEeCCCCcceeEecchhhhhcceeeeEEEeCC
Q 008484 74 LVNVTNHAQYNMSIHWHGLKQYRNGWAD-GPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIFWLRATVYGAIVIMPK 152 (564)
Q Consensus 74 ~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~~~~~Gl~G~iiV~~~ 152 (564)
.|+++|.|.....|..|=-.-. .| |+ ..+.||+++...|.. .-.|+-.|.|+..........-|.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965555444443321 22 22 468999999999975 5568888889986622223555555433
No 88
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=55.39 E-value=57 Score=33.25 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.0
Q ss_pred CCCCccccccCCCCeEEEEEEe
Q 008484 102 GPAYITQCPIKTGNSYTYDFNV 123 (564)
Q Consensus 102 Gv~~~~~~~i~PG~~~~y~~~~ 123 (564)
|.....+.||+|||+.+.+..+
T Consensus 331 GL~v~d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 331 GLEVDDQSAIAPGETVEVKMEA 352 (399)
T ss_pred cceeCCCCCcCCCcceEEEEEE
Confidence 4433335789999999999988
No 89
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.81 E-value=48 Score=31.01 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=45.8
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.++.|+.+||++.... -.|+|.+.+...+ +..-||..-.+.+++++ +|.|...|..+.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~-~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPDR-HGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcCC-CEEEEEEeehhh
Confidence 3588999999999998654 4555665543322 34458999999999888 699999998664
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 177 G 177 (194)
T MTH00047 177 G 177 (194)
T ss_pred C
Confidence 3
No 90
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=53.74 E-value=36 Score=32.68 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+||++..... .|+|.+. .-.-....-||..-.+.+++++ ||.|...|..+.
T Consensus 139 nel~lP~g~pV~~~ltS~DV--iHSF~VP----------------~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--MNSFFIP----------------QLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECch--hhhhhhh----------------hcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 46889999999998886652 2333332 2223344558999999999998 799999998664
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 91
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=48.79 E-value=50 Score=34.26 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=41.8
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEe
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 292 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~ 292 (564)
..+++++|+ ++|.+.|.+... . .|+++ +|+.+ ....=.|.||.+..+.+.+ . ||+|.+.|.
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~-~-------Efe~~--~~~~v---v~e~EnIaPG~s~~l~~~L-~-pGtY~~~C~ 104 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKA-L-------EWEIL--KGVMV---VEERENIAPGFSQKMTANL-Q-PGEYDMTCG 104 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCc-c-------eEEee--ccccc---cccccccCCCCceEEEEec-C-CceEEeecC
Confidence 578999996 899999998433 3 33333 22211 0112389999888887776 3 799999995
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=46.80 E-value=85 Score=24.19 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=30.4
Q ss_pred EecCcE--EEEEEEecCCCC--eEEEEEcCceeEEEeeCCCc--ccceEecEEEECCCceEEEEEEeCC----CCceeEE
Q 008484 220 VESGKT--YLLRIINAALND--ELFFAIAGHNFTVVEVDAVY--TKPFTTEAILIAPGQTTNVLVQANQ----KPGRYFM 289 (564)
Q Consensus 220 ~~~G~~--~rlriiN~~~~~--~~~~~l~gh~~~via~DG~~--~~p~~~d~v~l~pg~r~dv~v~~~~----~pg~y~l 289 (564)
+.+|+. +.+.+.|.+... ...+.+. .-+|=. ..|.... .|.||+...+-|+..- .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356764 568888988543 2334433 122221 1233334 8899977766665432 3699998
Q ss_pred EEe
Q 008484 290 AAR 292 (564)
Q Consensus 290 ~~~ 292 (564)
...
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 93
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.65 E-value=2.7e+02 Score=26.68 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=52.1
Q ss_pred CCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecchh-hh-
Q 008484 62 GPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIF-WL- 139 (564)
Q Consensus 62 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~~-~~- 139 (564)
...|.+..|..|++.+++.. .+ |+..++.- |+ +.-+-||......+++ +++|+|+-.|..- +.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~~----~~----k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPSL----GV----KVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceecccc----Cc----eeECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 36799999999999999964 33 45444321 11 1335689988888887 8899998877752 22
Q ss_pred hcceeeeEEEeCCC
Q 008484 140 RATVYGAIVIMPKP 153 (564)
Q Consensus 140 ~~Gl~G~iiV~~~~ 153 (564)
.+.|.+.++|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 25677777766543
No 94
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=44.61 E-value=55 Score=31.20 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=44.1
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+||++.... -.|+|.+ |.-.-....-||..-.+.+++++ ||.|...|..+.
T Consensus 130 n~l~iP~g~~v~~~ltS~D--ViHsf~v----------------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD--TMTSFWI----------------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCc--hhhhhhc----------------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 4678899999999888665 2333433 32233344558999999999998 799999998664
No 95
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=43.81 E-value=80 Score=30.36 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=44.9
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.+.. -.|+|.+.+...+ ...-||..-.+.+.+++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 4688999999999999854 4455555443322 23447899999998888 799999998654
No 96
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.80 E-value=2.1e+02 Score=26.68 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|+.+++.+... +..|.|.+-.... .+| .-||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d---~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMD---AIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eee---cCCCceEEEEEEcC
Confidence 346788999999999863 5667666543311 123 34788888999999
Q ss_pred CceeeEEEeechhch-hcccEEEEEEecC
Q 008484 520 NPGVWFMHCHLELHT-GWGLKTAFAVEDG 547 (564)
Q Consensus 520 npG~wl~HCHil~H~-d~GM~~~~~V~~~ 547 (564)
.||.+-.-|.-+--. ...|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999976544 4556666666653
No 97
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=41.49 E-value=1e+02 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=27.7
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEE
Q 008484 218 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTN 275 (564)
Q Consensus 218 l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~d 275 (564)
+++.+|+..+||..... .+.+.+-..+|.. +|. .+-+.|.+|+++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888865433 3677777777653 442 3334455555544
No 98
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=41.23 E-value=1.3e+02 Score=27.22 Aligned_cols=62 Identities=6% Similarity=0.069 Sum_probs=43.4
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|..+||++..+. -.|+|.+.....+ +..-||..-.+.+.+.. +|.|...|..+.
T Consensus 73 n~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgvK----------------~DavPGr~n~l~~~~~~-~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD--VIHSWSVPSLGIK----------------ADAIPGRLHKINTFILR-EGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc--cceeeeccccCce----------------eeccCCceEEEEEecCC-CeEEEEEcchhc
Confidence 3578999999999887665 3455655544333 23346777778888887 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 134 G 134 (162)
T PTZ00047 134 G 134 (162)
T ss_pred C
Confidence 3
No 99
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=40.45 E-value=1.9e+02 Score=22.99 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=35.8
Q ss_pred cEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEe
Q 008484 224 KTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAAR 292 (564)
Q Consensus 224 ~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~ 292 (564)
..++|.|.|.|. ....|.+.... . ......++.|.+|++.++.+.....-|-|-|..+
T Consensus 20 g~l~l~l~N~g~-~~~~~~v~~~~-------y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGS-AAVTFTVYDNA-------Y---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCC-CcEEEEEEeCC-------c---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 478999999984 44434443311 1 1112366778888888888877554466666665
No 100
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=40.33 E-value=59 Score=32.87 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=46.0
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+||++...... |+|.+. .-.-.+..-||.+-.+.+.+++ +|.|...|..+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--HSF~IP----------------~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--NSFFIP----------------RLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--hhhhhh----------------hhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhc
Confidence 457899999999999877633 334433 3334455568888899999988 799999998765
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 212 G 212 (315)
T PRK10525 212 G 212 (315)
T ss_pred C
Confidence 3
No 101
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=40.21 E-value=22 Score=29.13 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.4
Q ss_pred EEECCcCCCCeEEeecCCEEEEEEEeCCC
Q 008484 54 VTVNGRFPGPTIYVREGDRVLVNVTNHAQ 82 (564)
Q Consensus 54 ~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~ 82 (564)
+.+||+.-=|-=.|+.||.|+|++.|..-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 47999886788999999999999999863
No 102
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.91 E-value=1.3e+02 Score=28.90 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=53.7
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEe
Q 008484 439 TRLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRA 518 (564)
Q Consensus 439 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 518 (564)
.+.+.++.|+.|++.+.+. +..|.|.+=. .| =-+..-||-...+.+.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~-------~~---------------------~k~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPS-------LG---------------------VKVDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccc-------cC---------------------ceeECCCCcceeEEEEe
Confidence 3456889999999999874 4565555432 22 01244477788888999
Q ss_pred cCceeeEEEeechhch-hcccEEEEEEecC
Q 008484 519 DNPGVWFMHCHLELHT-GWGLKTAFAVEDG 547 (564)
Q Consensus 519 dnpG~wl~HCHil~H~-d~GM~~~~~V~~~ 547 (564)
+.||.+...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999877655 4556666666543
No 103
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=39.84 E-value=85 Score=30.14 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=51.5
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEecC
Q 008484 441 LSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRADN 520 (564)
Q Consensus 441 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 520 (564)
-+.++.|+.|++.+... +..|. |+|-+.+ ..+|.+ ||-...+.|++|.
T Consensus 140 el~lP~g~pV~~~ltS~----DViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSN----SVMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEEC----chhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 35788999999999874 34444 5554442 124444 6778888999999
Q ss_pred ceeeEEEeechhch-hcccEEEEEEecC
Q 008484 521 PGVWFMHCHLELHT-GWGLKTAFAVEDG 547 (564)
Q Consensus 521 pG~wl~HCHil~H~-d~GM~~~~~V~~~ 547 (564)
||.|.-.|--.--. ...|...++|.++
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999755433 3556666666553
No 104
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=37.62 E-value=2.2e+02 Score=25.10 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=44.5
Q ss_pred cEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceE-------ecEEEECCCceE-EEEEEeCCCCceeEEEEe
Q 008484 224 KTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFT-------TEAILIAPGQTT-NVLVQANQKPGRYFMAAR 292 (564)
Q Consensus 224 ~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~-------~d~v~l~pg~r~-dv~v~~~~~pg~y~l~~~ 292 (564)
.+|.|.+-|.|... +.++...++|+ +||+.+.|.. .+.|.|.|||-- ++.+.-.- .|.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEEE
Confidence 47899999999543 57888899987 8998876532 356789999988 55444333 355445443
No 105
>PRK13202 ureB urease subunit beta; Reviewed
Probab=36.41 E-value=1.1e+02 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=41.1
Q ss_pred eEEeecC--CEEEEEEEeCCCCCce--eeeCCCCCCCCCCCC---------CCCCccccccCCCCeEEEEEE
Q 008484 64 TIYVREG--DRVLVNVTNHAQYNMS--IHWHGLKQYRNGWAD---------GPAYITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 64 ~i~v~~G--d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D---------Gv~~~~~~~i~PG~~~~y~~~ 122 (564)
.|.+++| +++.|.|+|..+.|.- -|+|=....+.=.-| ..|.-|..-..||++.+-+.-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 6999999999987765 588877665431122 233344566788888877664
No 106
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.35 E-value=2.5e+02 Score=24.08 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=42.8
Q ss_pred eEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc-------cceEecEEEECCCceEEEEEEeCCC
Q 008484 217 AMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-------KPFTTEAILIAPGQTTNVLVQANQK 283 (564)
Q Consensus 217 ~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~v~l~pg~r~dv~v~~~~~ 283 (564)
.|++..-..|+|++...+ ...+.|+|..+ ++.++..- .+....++.|..|++|+|.|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 367777778999998444 45678888874 66665432 3456778899999999999886664
No 107
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.44 E-value=2.2e+02 Score=25.68 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=49.4
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCceEEEeecCCCCCCCCCCCCCCCCCCCcceeeEecCCCEEEEEEEec
Q 008484 440 RLSKIAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKYPANYNLVDPIERNTAAVPTGGWTAIRFRAD 519 (564)
Q Consensus 440 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 519 (564)
..+.++.|..|++.+... +..|.|.+-..-. .. ..-||-...+.+.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~---DavPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KA---DAIPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------ee---eccCCceEEEEEecC
Confidence 345688999999998864 4566665543211 12 333677777888899
Q ss_pred CceeeEEEeechhchh-cccEEEEEEec
Q 008484 520 NPGVWFMHCHLELHTG-WGLKTAFAVED 546 (564)
Q Consensus 520 npG~wl~HCHil~H~d-~GM~~~~~V~~ 546 (564)
.||.+...|.-+--.. ..|-..++|.+
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999998654322 34555555544
No 108
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.33 E-value=2.7e+02 Score=25.74 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.6
Q ss_pred cccCCCCeEEEEEEe-CCCCccee
Q 008484 109 CPIKTGNSYTYDFNV-TGQRGTLW 131 (564)
Q Consensus 109 ~~i~PG~~~~y~~~~-~~~~Gt~w 131 (564)
..|+||++.++.|.+ +...|.|-
T Consensus 81 ~~i~pg~~vsh~~vv~p~~~G~f~ 104 (181)
T PF05753_consen 81 ERIPPGENVSHSYVVRPKKSGYFN 104 (181)
T ss_pred EEECCCCeEEEEEEEeeeeeEEEE
Confidence 568999999999988 45567653
No 109
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.97 E-value=1.8e+02 Score=27.94 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=44.6
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++..+. -.|+|.+..-..+ ...-||..-.+.+++++ ||.|...|..+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vp~l~~k----------------~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hhhheeccccCCe----------------eecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 4689999999999887664 4455555443222 23347888888898888 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 201 G 201 (227)
T MTH00154 201 G 201 (227)
T ss_pred C
Confidence 3
No 110
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=31.39 E-value=1.7e+02 Score=28.09 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=43.7
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+.....+ +..-||..-.+.+.+++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VLHSWAVPSLGLK----------------TDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--ccccccccccccc----------------eecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 4688999999999988665 3444444433222 33447888888898888 799999998654
No 111
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.19 E-value=1.4e+02 Score=28.73 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=44.1
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+.+... .+..-||.+-.+.+++++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~----------------k~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VLHSWAVPALGV----------------KMDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cccceeccccCC----------------ccccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 4688999999999988665 344444443322 233458999999999888 799999998654
No 112
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=30.68 E-value=1.2e+02 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=31.3
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc----cceEecEEEECCCceEE
Q 008484 225 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT----KPFTTEAILIAPGQTTN 275 (564)
Q Consensus 225 ~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~----~p~~~d~v~l~pg~r~d 275 (564)
.|++||.|.+.. ...|-...+.+...||... +..-...=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 578999998743 3678888888888887632 11223344666766544
No 113
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.52 E-value=58 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.6
Q ss_pred EecCCCEEEEEEEe-cCc---eeeEEEeech
Q 008484 505 AVPTGGWTAIRFRA-DNP---GVWFMHCHLE 531 (564)
Q Consensus 505 ~vp~~g~~~irf~a-dnp---G~wl~HCHil 531 (564)
.|+||..+.|.++. .|| |+|+|+|=..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 47899999999954 576 9999998643
No 114
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.27 E-value=2.1e+02 Score=27.58 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=44.2
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+.+...+ +..-||..-.+.+.+++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED--VLHSWTVPALGVK----------------MDAVPGRLNQATFIISR-PGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCc--ccccccccccCce----------------eEecCCceEEEEEEeCC-cEEEEEEchhhc
Confidence 5688999999999888665 3444554433322 33447888888888888 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 201 G 201 (230)
T MTH00185 201 G 201 (230)
T ss_pred C
Confidence 3
No 115
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=29.73 E-value=41 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=18.6
Q ss_pred ceeeEEEECCcCCC---CeEEeecCCEEEEE
Q 008484 49 HAKPIVTVNGRFPG---PTIYVREGDRVLVN 76 (564)
Q Consensus 49 ~~~~~~~~Ng~~pg---P~i~v~~Gd~v~v~ 76 (564)
....++.+||++|- -.+.++.||+|+++
T Consensus 38 ~~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 38 GSYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp TEEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred CceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 45788999998763 47889999998863
No 116
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=29.71 E-value=81 Score=25.42 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=27.1
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc--c--ceEecEEEECCCceEE
Q 008484 225 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT--K--PFTTEAILIAPGQTTN 275 (564)
Q Consensus 225 ~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~v~l~pg~r~d 275 (564)
.|++||-|.+.. .+.|-...+.+...||... + ..-...=.|.||+.+.
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~ 66 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFE 66 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEE
Confidence 578999999855 3677777788877777422 1 1112344677777544
No 117
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=28.44 E-value=5.5 Score=32.55 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=8.8
Q ss_pred CCeE-EeecCCEEEEE
Q 008484 62 GPTI-YVREGDRVLVN 76 (564)
Q Consensus 62 gP~i-~v~~Gd~v~v~ 76 (564)
||.| .+++|..|-..
T Consensus 64 ~p~ifqvrpGsvVS~s 79 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFS 79 (118)
T ss_dssp EEGGGT--TT-EEEEE
T ss_pred CceEEEEcCCcEEEEe
Confidence 5877 89999987643
No 118
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.14 E-value=52 Score=25.98 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.9
Q ss_pred eeeEEEECCcCCCCeEEeecCCEEEEE
Q 008484 50 AKPIVTVNGRFPGPTIYVREGDRVLVN 76 (564)
Q Consensus 50 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 76 (564)
+...+.+||+.-++--+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 577899999988899999999999874
No 119
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.50 E-value=2.1e+02 Score=23.52 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=40.8
Q ss_pred eEEeecC-CEEEEEEEeCCCCCce--eeeCCCCCCCCCCCC---------CCCCccccccCCCCeEEEEEE
Q 008484 64 TIYVREG-DRVLVNVTNHAQYNMS--IHWHGLKQYRNGWAD---------GPAYITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 64 ~i~v~~G-d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D---------Gv~~~~~~~i~PG~~~~y~~~ 122 (564)
.|++++| +++.|.|+|..+.|.- -|+|=....+.=.-| ..|.-|.....||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 7999999999987765 588877765431122 233344566788888887664
No 120
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=26.26 E-value=4.1e+02 Score=22.59 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcc-cceEecEEEECCCceEEEEEEeCCCCc
Q 008484 218 MEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYT-KPFTTEAILIAPGQTTNVLVQANQKPG 285 (564)
Q Consensus 218 l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~v~l~pg~r~dv~v~~~~~pg 285 (564)
+++.....|+|.+...+ ...+.|+|.. |++.++..- .+.....+.|..|++|.+.|..-+..+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 45555556888885433 3457788753 444443322 223345688888888888887655433
No 121
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.41 E-value=2.3e+02 Score=27.32 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.++. -.|+|.+.+...+ +..-||..-.+.+.++. ||.|...|..+.
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~k----------------~daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLSVK----------------IDAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccCce----------------eEccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 4688999999999998874 4445555443322 23447888888888888 799999998654
No 122
>PRK13203 ureB urease subunit beta; Reviewed
Probab=25.13 E-value=2.3e+02 Score=23.38 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=40.5
Q ss_pred eEEeecC-CEEEEEEEeCCCCCce--eeeCCCCCCCCCCCC---------CCCCccccccCCCCeEEEEEE
Q 008484 64 TIYVREG-DRVLVNVTNHAQYNMS--IHWHGLKQYRNGWAD---------GPAYITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 64 ~i~v~~G-d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D---------Gv~~~~~~~i~PG~~~~y~~~ 122 (564)
.|.+++| +++.|+|+|..+.+.- -|+|=......=.-| ..|.-|.....||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 7999999999987765 588877665431122 133344466788888877664
No 123
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=24.74 E-value=1.2e+02 Score=20.08 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.8
Q ss_pred eeEEEecCcEEEEEEEecC
Q 008484 216 FAMEVESGKTYLLRIINAA 234 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~ 234 (564)
.......|+.||||+..++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 5667888999999998766
No 124
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=24.36 E-value=3.6e+02 Score=23.00 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.9
Q ss_pred cccCCCCeEEEEEEe
Q 008484 109 CPIKTGNSYTYDFNV 123 (564)
Q Consensus 109 ~~i~PG~~~~y~~~~ 123 (564)
..|+|+++.+..|++
T Consensus 87 Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 87 VTLPPNESKTVTFTI 101 (121)
T ss_pred EEECCCCEEEEEEEE
Confidence 568999999988887
No 125
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.34 E-value=2e+02 Score=25.40 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=22.8
Q ss_pred EECCCceEEEEEEeCCCC---ceeEEEEeecCCC
Q 008484 267 LIAPGQTTNVLVQANQKP---GRYFMAARPFNDA 297 (564)
Q Consensus 267 ~l~pg~r~dv~v~~~~~p---g~y~l~~~~~~~~ 297 (564)
.|.||+.+.|.++.-..| |.|.+.+..+..+
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G 131 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPG 131 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCC
Confidence 467899999999533223 8999999876544
No 126
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=24.24 E-value=48 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.6
Q ss_pred EEEECCcCC-CCeEEeecCCEEEE
Q 008484 53 IVTVNGRFP-GPTIYVREGDRVLV 75 (564)
Q Consensus 53 ~~~~Ng~~p-gP~i~v~~Gd~v~v 75 (564)
.+.+||+.- -|..++++||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 357899864 67899999999986
No 127
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=24.13 E-value=2.7e+02 Score=23.63 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=41.3
Q ss_pred EEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccce----EecEEEECCCceEEEEEEeCC--CCceeEEEEe
Q 008484 219 EVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPF----TTEAILIAPGQTTNVLVQANQ--KPGRYFMAAR 292 (564)
Q Consensus 219 ~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~----~~d~v~l~pg~r~dv~v~~~~--~pg~y~l~~~ 292 (564)
.+..|+.+++++-=........+. -.+.+...+|..+--. ....+....++++.+.++++. .||+|.+.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 577889888887665533333322 3456667777655211 122455555899999988887 3699999886
Q ss_pred e
Q 008484 293 P 293 (564)
Q Consensus 293 ~ 293 (564)
-
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 3
No 128
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.98 E-value=3.2e+02 Score=26.47 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=44.6
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+..-..++ ..-||..-.+.+++++ ||.|...|..+.
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgvK~----------------DaiPG~~n~~~~~~~~-~G~y~g~C~e~C 211 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGLKI----------------DAVPGRLNQTGFFIKR-PGVFYGQCSEIC 211 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCcee----------------ecCCCcceeEEEEcCC-CEEEEEEchhhc
Confidence 4688999999999887654 55566665544333 3336777788888888 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 212 G 212 (240)
T MTH00023 212 G 212 (240)
T ss_pred C
Confidence 3
No 129
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=23.59 E-value=2.7e+02 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=14.6
Q ss_pred CeEEeecCCEEEEEEEeC
Q 008484 63 PTIYVREGDRVLVNVTNH 80 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N~ 80 (564)
|..|+.+|+.-.||+.-.
T Consensus 75 Plfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 75 PFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred CeEEECCCCceEEEEEEC
Confidence 788999998888887654
No 130
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=23.43 E-value=2.6e+02 Score=26.89 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.0
Q ss_pred CeEEeecCCEEEEEEEe
Q 008484 63 PTIYVREGDRVLVNVTN 79 (564)
Q Consensus 63 P~i~v~~Gd~v~v~l~N 79 (564)
|.+++++|+.-.||+.-
T Consensus 76 Pl~rl~pg~~q~vRii~ 92 (230)
T PRK09918 76 PVARVEPGQSQQVRFIL 92 (230)
T ss_pred CeEEECCCCceEEEEEE
Confidence 78888888877777663
No 131
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.08 E-value=2.8e+02 Score=22.93 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=39.7
Q ss_pred eEEEecC--cEEEEEEEecCCCCeEEEEEcCceeEEE--------eeCCCcccceEecEEEECCCceEEEEEEeC
Q 008484 217 AMEVESG--KTYLLRIINAALNDELFFAIAGHNFTVV--------EVDAVYTKPFTTEAILIAPGQTTNVLVQAN 281 (564)
Q Consensus 217 ~l~~~~G--~~~rlriiN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pg~r~dv~v~~~ 281 (564)
.+++.+| +++++++.|.| .+...+.-|=|-+++= ++=|-.+.=.....+...||+..+|.+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4788888 58899999999 6766565555544431 111211111123467788888888877644
No 132
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=23.02 E-value=84 Score=26.59 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred EEEEeCCCCCc---eeeeCCCCCCCCC---CCCCCCCccccccCCCCeEEEEEEe--CCCCcceeEecchhhhhcceeee
Q 008484 75 VNVTNHAQYNM---SIHWHGLKQYRNG---WADGPAYITQCPIKTGNSYTYDFNV--TGQRGTLWWHAHIFWLRATVYGA 146 (564)
Q Consensus 75 v~l~N~l~~~~---~iH~HG~~~~~~~---~~DGv~~~~~~~i~PG~~~~y~~~~--~~~~Gt~wYH~h~~~~~~Gl~G~ 146 (564)
|++.|....+. +=|||=-+..+.. ..+||-| .|..|+||++|+|.=-. +.+.|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~-------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT-------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce-------------EEEE
Confidence 55566655442 3477643332210 0234433 26779999999996433 233444 5666
Q ss_pred EEEeCCCCC
Q 008484 147 IVIMPKPGS 155 (564)
Q Consensus 147 iiV~~~~~~ 155 (564)
....+..+.
T Consensus 100 Y~M~~e~G~ 108 (126)
T COG2967 100 YEMIDEDGE 108 (126)
T ss_pred EEEecCCCc
Confidence 555555543
No 133
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.99 E-value=2.7e+02 Score=26.62 Aligned_cols=62 Identities=8% Similarity=0.177 Sum_probs=43.8
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+..... .+..-||..-.+.+++++ ||.|...|..+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~----------------k~daiPG~~n~~~~~~~~-~G~~~g~CsE~C 200 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD--VLHSWTLPSLGL----------------KMDAVPGRLNQLAFLSSR-PGSFYGQCSEIC 200 (225)
T ss_pred ceEEEecCCEEEEEEEeCC--hhhccccccccc----------------cccCCCCeEEEEEEEcCC-CEEEEEEccccc
Confidence 4688999999999988665 344455443222 223347888888888888 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 201 G 201 (225)
T MTH00168 201 G 201 (225)
T ss_pred C
Confidence 3
No 134
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=22.71 E-value=1.2e+02 Score=21.11 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCcceee-EecCCCEEEEEEEecCceeeEEEeechhchhc
Q 008484 496 VDPIERNTA-AVPTGGWTAIRFRADNPGVWFMHCHLELHTGW 536 (564)
Q Consensus 496 ~~p~~rDTv-~vp~~g~~~irf~adnpG~wl~HCHil~H~d~ 536 (564)
..|..+-+. ..+.|....++++-..-..+=+||..+.|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 345544443 34567888888888888899999999999764
No 135
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.33 E-value=3e+02 Score=22.67 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=40.2
Q ss_pred eEEeecC-CEEEEEEEeCCCCCce--eeeCCCCCCCCCCCC---------CCCCccccccCCCCeEEEEEE
Q 008484 64 TIYVREG-DRVLVNVTNHAQYNMS--IHWHGLKQYRNGWAD---------GPAYITQCPIKTGNSYTYDFN 122 (564)
Q Consensus 64 ~i~v~~G-d~v~v~l~N~l~~~~~--iH~HG~~~~~~~~~D---------Gv~~~~~~~i~PG~~~~y~~~ 122 (564)
.|++++| +++.|.|+|..+.+.- -|+|=....+.=.-| ..|.-|..-..||++.+-+.-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 4788888 6899999999987765 588877765431122 133344456788888876664
No 136
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.21 E-value=6.8e+02 Score=28.46 Aligned_cols=67 Identities=9% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCCeEEeec---CCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCCCccccccCCCCeEEEEEEeCCCCcceeEecch
Q 008484 61 PGPTIYVRE---GDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI 136 (564)
Q Consensus 61 pgP~i~v~~---Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~~~~~~~~Gt~wYH~h~ 136 (564)
+.|.++++. ...|+|+|.|....+..+|..-... .++.+ -+..|++|++.+..|.+ ...+ -||---+
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLtV 661 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFTV 661 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEEEE
Confidence 346666644 4569999999998888877653211 11111 13568999999999976 3333 5665443
No 137
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.97 E-value=3.7e+02 Score=25.79 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=44.0
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++.... -.|+|.+.....+ . ..-||..-.+.+++++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k-------------~---daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VLHSWAVPSLGVK-------------M---DAVPGRLNQTTFFISR-TGLFYGQCSEIC 200 (229)
T ss_pred ceEEEecCeEEEEEEEECC--ccccccccccCce-------------e---ecCCCceEEEEEEcCC-CEEEEEEccccc
Confidence 4688999999998887664 4555555543322 2 2336888888888888 799999998654
Q ss_pred C
Q 008484 296 D 296 (564)
Q Consensus 296 ~ 296 (564)
.
T Consensus 201 G 201 (229)
T MTH00038 201 G 201 (229)
T ss_pred C
Confidence 3
No 138
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.75 E-value=4.1e+02 Score=25.47 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=43.7
Q ss_pred eeEEEecCcEEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCceeEEEEeecC
Q 008484 216 FAMEVESGKTYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGRYFMAARPFN 295 (564)
Q Consensus 216 ~~l~~~~G~~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~y~l~~~~~~ 295 (564)
..+.+..|+.+|+++..+. -.|+|.+..... .+..-||..-.+.+++++ ||.|...|..+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~lg~----------------K~DavPG~~n~~~~~~~~-~G~y~g~CsE~C 200 (227)
T MTH00117 140 HRMVIPMESPIRILITAED--VLHSWAVPSLGV----------------KTDAVPGRLNQTSFITTR-PGVFYGQCSEIC 200 (227)
T ss_pred ceEEEecCceEEEEEEecc--hhhcccccccCc----------------eeEecCCceEEEEEEEcc-cceEEEEecccc
Confidence 4688999999999988665 344444443322 233447888888998888 799999998654
No 139
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=21.14 E-value=5.8e+02 Score=22.79 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=41.1
Q ss_pred EEEEEEEecCCCCeEEEEEcCceeEEEeeCCCcccceEecEEEECCCceEEEEEEeCCCCce--eEEEEe
Q 008484 225 TYLLRIINAALNDELFFAIAGHNFTVVEVDAVYTKPFTTEAILIAPGQTTNVLVQANQKPGR--YFMAAR 292 (564)
Q Consensus 225 ~~rlriiN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pg~r~dv~v~~~~~pg~--y~l~~~ 292 (564)
++...|.|.++.. ...|--|-.++.|| |.-.+.|.|..-.+|+|.++... |+. |.+|..
T Consensus 69 ~v~y~i~~~~~~~----~~~G~~mPM~A~DG----pHYG~Nvkl~g~G~Y~v~~~I~p-P~~~~~~~H~D 129 (151)
T PF10634_consen 69 TVSYEITKKGSGK----VQEGTFMPMVASDG----PHYGDNVKLDGPGKYKVTFTIGP-PSAQGFGRHTD 129 (151)
T ss_dssp EEEEEEEETTTTE----EEEEEEEEEEETTE----EEEEEEE-STSSEEEEEEEEEE--GGGGT-EEE-S
T ss_pred EEEEEEEeCCCCe----EEEEecceeecCcC----ccccccccCCCCccEEEEEEEcC-ccccceeeecc
Confidence 4567788887544 33444556778888 77789999999999999999988 554 878775
No 140
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=20.98 E-value=2.2e+02 Score=29.25 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=0.0
Q ss_pred EEEEEEEEEeecCCceeeE---EEECCcCCCCeEEeecCCEEEEEEEeCCCCCce-------eeeCCCCCCCCCCCCCCC
Q 008484 35 YQFDVQVKNVSRLCHAKPI---VTVNGRFPGPTIYVREGDRVLVNVTNHAQYNMS-------IHWHGLKQYRNGWADGPA 104 (564)
Q Consensus 35 ~~l~~~~~~~~~~g~~~~~---~~~Ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~-------iH~HG~~~~~~~~~DGv~ 104 (564)
.+..+....+...|+...+ ++=||.-| +++.+=.+-.||+.|..-.... +---|+.+.+.
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p---v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~------- 318 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMTLTVTNNGDSP---VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN------- 318 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEESSS----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---------
T ss_pred eEEEEeccEEecCCcEEEEEEEEEcCCCCc---eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-------
Q ss_pred CccccccCCCCeEEEEEEe
Q 008484 105 YITQCPIKTGNSYTYDFNV 123 (564)
Q Consensus 105 ~~~~~~i~PG~~~~y~~~~ 123 (564)
.||+|||+.+.+..+
T Consensus 319 ----~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 319 ----SPIAPGETRTLTVEA 333 (381)
T ss_dssp ----S-B-TT-EEEEEEEE
T ss_pred ----CCcCCCceEEEEEEe
No 141
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.50 E-value=25 Score=30.57 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=32.8
Q ss_pred ceEEEEEEEEEEEeecCCceeeEEEECCcC-CCCeEEeecCCEEEEEEEeCCCCCceeeeCCCCCCCCCCCCCCC
Q 008484 31 AIKKYQFDVQVKNVSRLCHAKPIVTVNGRF-PGPTIYVREGDRVLVNVTNHAQYNMSIHWHGLKQYRNGWADGPA 104 (564)
Q Consensus 31 ~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~ 104 (564)
....|-+++++....... ....+.+.|.+ +|..-+-..+..++..++.. .....++.+|.. |..+.+|..
T Consensus 31 ~~~~yy~t~se~~~~~~~-~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~~--Pd~F~eg~~ 101 (131)
T PF03100_consen 31 DSAVYYLTPSELAAEPQK-VGRKVRVGGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGPL--PDLFREGQG 101 (131)
T ss_dssp -SSS-EE-TTTTTTTST--TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES----CTT--TTSE
T ss_pred ccceEEcCHHHHhhcccc-CCceEEEeeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCCC--CccccCCCe
Confidence 334455555544322221 22333455544 45444444788999999877 444678888854 334456643
No 142
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=20.22 E-value=2.2e+02 Score=23.57 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=31.6
Q ss_pred eeEecCCCEEEEEEEecCceeeEEEeechhchhccc--EEEEEEe
Q 008484 503 TAAVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGL--KTAFAVE 545 (564)
Q Consensus 503 Tv~vp~~g~~~irf~adnpG~wl~HCHil~H~d~GM--~~~~~V~ 545 (564)
...|.+|+...+.|.-+..|.-+|.|++.+ .|+ ...|.|-
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~vy 69 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDVY 69 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEEE
Confidence 346888999999998887899999999999 444 5555553
Done!