Query 008486
Match_columns 564
No_of_seqs 451 out of 2787
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.2E-31 4.1E-36 274.7 21.7 267 271-538 46-338 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 5.2E-31 1.8E-35 281.1 21.0 278 258-536 3-362 (457)
3 3now_A UNC-45 protein, SD10334 100.0 5E-30 1.7E-34 285.1 26.5 299 255-553 419-756 (810)
4 3nmz_A APC variant protein; pr 100.0 2.1E-30 7.2E-35 273.3 21.8 262 274-536 165-452 (458)
5 3l6x_A Catenin delta-1; cateni 100.0 7E-30 2.4E-34 275.2 24.3 294 256-552 47-400 (584)
6 3nmz_A APC variant protein; pr 100.0 6.3E-30 2.1E-34 269.7 23.4 300 254-553 67-427 (458)
7 1xm9_A Plakophilin 1; armadill 100.0 2.6E-29 8.8E-34 267.9 23.5 282 253-536 40-451 (457)
8 3ul1_B Importin subunit alpha- 100.0 8.3E-29 2.8E-33 267.9 27.2 297 253-549 96-403 (510)
9 3tpo_A Importin subunit alpha- 100.0 2.3E-28 7.9E-33 265.7 29.4 297 253-549 115-422 (529)
10 3ul1_B Importin subunit alpha- 100.0 2.7E-28 9.4E-33 263.8 25.7 296 257-552 57-363 (510)
11 3l6x_A Catenin delta-1; cateni 100.0 3.4E-28 1.2E-32 262.0 25.4 287 254-542 87-484 (584)
12 3now_A UNC-45 protein, SD10334 100.0 2.3E-28 8E-33 271.7 24.5 295 256-552 376-713 (810)
13 4b8j_A Importin subunit alpha- 100.0 2.6E-27 8.8E-32 257.3 30.9 296 254-549 114-416 (528)
14 4b8j_A Importin subunit alpha- 100.0 5.5E-27 1.9E-31 254.7 29.8 293 257-549 74-373 (528)
15 3tpo_A Importin subunit alpha- 100.0 3.7E-27 1.3E-31 256.1 28.3 295 257-551 76-381 (529)
16 3nmw_A APC variant protein; AR 100.0 3E-28 1E-32 249.5 18.1 245 253-497 69-339 (354)
17 1wa5_B Importin alpha subunit; 99.9 4.1E-26 1.4E-30 248.0 29.5 281 255-535 128-413 (530)
18 1wa5_B Importin alpha subunit; 99.9 7.8E-26 2.7E-30 245.8 30.8 293 257-549 87-385 (530)
19 2jdq_A Importin alpha-1 subuni 99.9 1.9E-25 6.7E-30 236.8 32.0 289 257-545 64-359 (450)
20 4hxt_A De novo protein OR329; 99.9 3.7E-26 1.3E-30 222.7 24.0 238 299-536 2-243 (252)
21 4hxt_A De novo protein OR329; 99.9 3.6E-26 1.2E-30 222.8 23.4 238 257-494 2-243 (252)
22 4db8_A Armadillo-repeat protei 99.9 1.9E-26 6.6E-31 225.4 19.0 236 257-492 12-251 (252)
23 2jdq_A Importin alpha-1 subuni 99.9 1.6E-24 5.5E-29 229.7 34.6 282 256-538 106-394 (450)
24 4db8_A Armadillo-repeat protei 99.9 9.8E-26 3.4E-30 220.4 19.9 236 299-534 12-251 (252)
25 1jdh_A Beta-catenin; beta-cate 99.9 4.5E-24 1.5E-28 231.2 25.0 277 256-535 58-340 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.7E-24 5.7E-29 234.6 19.1 291 255-549 15-310 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.7E-23 5.7E-28 232.9 26.0 276 256-534 55-336 (644)
28 2z6h_A Catenin beta-1, beta-ca 99.9 4E-24 1.4E-28 237.8 20.8 290 255-548 12-306 (644)
29 3tt9_A Plakophilin-2; cell adh 99.9 2E-23 6.9E-28 199.8 14.0 195 257-452 8-230 (233)
30 2z6g_A B-catenin; FULL-length, 99.9 2.8E-22 9.5E-27 227.1 25.0 291 255-548 232-531 (780)
31 2z6g_A B-catenin; FULL-length, 99.9 7.5E-23 2.6E-27 231.8 20.1 289 256-548 149-442 (780)
32 3tt9_A Plakophilin-2; cell adh 99.9 3.6E-23 1.2E-27 198.1 14.3 193 300-493 9-230 (233)
33 4db6_A Armadillo repeat protei 99.9 2.7E-22 9.1E-27 190.4 18.7 196 297-492 10-209 (210)
34 4db6_A Armadillo repeat protei 99.9 7E-22 2.4E-26 187.5 21.2 197 338-534 10-209 (210)
35 3opb_A SWI5-dependent HO expre 99.9 2E-22 6.8E-27 220.1 19.0 280 255-534 374-728 (778)
36 3opb_A SWI5-dependent HO expre 99.9 2E-20 6.9E-25 204.3 23.4 288 256-545 333-694 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 3.8E-19 1.3E-23 177.3 23.4 238 254-492 25-287 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 6E-19 2E-23 175.9 17.9 189 353-541 53-245 (296)
39 1wgm_A Ubiquitin conjugation f 99.8 1E-19 3.5E-24 149.6 9.3 76 158-234 16-92 (98)
40 2kr4_A Ubiquitin conjugation f 99.8 8.9E-20 3.1E-24 146.2 6.5 74 159-233 9-82 (85)
41 2f42_A STIP1 homology and U-bo 99.8 1.6E-19 5.3E-24 163.6 8.9 75 160-234 102-176 (179)
42 2kre_A Ubiquitin conjugation f 99.8 1.7E-19 5.7E-24 148.9 7.0 75 158-233 23-97 (100)
43 1t1h_A Gspef-atpub14, armadill 99.7 1.2E-18 4.1E-23 137.9 6.5 75 159-233 3-77 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 4.6E-17 1.6E-21 161.8 15.4 76 159-234 203-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 5.3E-17 1.8E-21 132.8 5.3 74 160-233 3-85 (94)
46 3ztg_A E3 ubiquitin-protein li 99.6 6E-15 2.1E-19 120.4 8.8 75 159-233 8-85 (92)
47 3grl_A General vesicular trans 99.6 2.2E-13 7.6E-18 145.3 22.1 287 255-545 19-353 (651)
48 3grl_A General vesicular trans 99.5 2E-12 6.7E-17 138.1 25.1 293 253-545 56-405 (651)
49 3htk_C E3 SUMO-protein ligase 99.5 1.9E-13 6.5E-18 129.3 13.1 71 160-230 177-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 122.8 4.8 71 160-230 48-119 (124)
51 3m62_A Ubiquitin conjugation f 99.4 1.2E-13 4.1E-18 152.6 9.6 153 52-233 807-960 (968)
52 2bay_A PRE-mRNA splicing facto 99.4 3.5E-14 1.2E-18 105.4 2.0 54 164-218 3-57 (61)
53 1z6u_A NP95-like ring finger p 99.4 9.4E-14 3.2E-18 123.6 4.8 70 160-229 74-144 (150)
54 1oyz_A Hypothetical protein YI 99.4 6.7E-12 2.3E-16 124.1 18.0 229 255-534 21-250 (280)
55 3ltm_A Alpha-REP4; protein eng 99.4 1.3E-11 4.5E-16 116.6 18.2 190 298-538 18-207 (211)
56 3ltm_A Alpha-REP4; protein eng 99.4 1.7E-11 5.8E-16 115.8 18.3 190 255-495 17-206 (211)
57 2y43_A E3 ubiquitin-protein li 99.4 4.7E-13 1.6E-17 110.7 5.0 71 160-231 18-89 (99)
58 3ltj_A Alpharep-4; protein eng 99.3 3.7E-11 1.3E-15 112.5 18.4 186 255-491 12-197 (201)
59 3lrq_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 110.9 4.4 71 160-230 18-89 (100)
60 2ecw_A Tripartite motif-contai 99.3 3.9E-13 1.3E-17 107.8 3.6 65 158-222 13-82 (85)
61 3ltj_A Alpharep-4; protein eng 99.3 5E-11 1.7E-15 111.6 18.6 185 299-534 14-198 (201)
62 3l11_A E3 ubiquitin-protein li 99.3 2.7E-13 9.3E-18 115.4 2.3 69 160-228 11-86 (115)
63 2ecy_A TNF receptor-associated 99.3 1.5E-12 5.2E-17 98.9 5.9 56 159-214 10-65 (66)
64 2ecv_A Tripartite motif-contai 99.3 4.9E-13 1.7E-17 107.2 2.8 65 158-222 13-82 (85)
65 3hct_A TNF receptor-associated 99.3 1.1E-12 3.7E-17 112.1 4.8 70 158-227 12-81 (118)
66 2ysl_A Tripartite motif-contai 99.3 3.1E-12 1E-16 99.3 6.9 57 158-214 14-72 (73)
67 2yur_A Retinoblastoma-binding 99.3 3.4E-12 1.2E-16 99.3 6.7 52 159-210 10-63 (74)
68 2ckl_A Polycomb group ring fin 99.3 1.1E-12 3.8E-17 110.2 4.2 68 160-228 11-83 (108)
69 2egp_A Tripartite motif-contai 99.3 1.2E-13 4.1E-18 109.2 -2.2 63 160-222 8-76 (79)
70 2csy_A Zinc finger protein 183 99.3 1.5E-12 5.1E-17 103.3 4.1 61 160-222 11-71 (81)
71 2djb_A Polycomb group ring fin 99.3 5.3E-12 1.8E-16 97.6 6.7 58 159-217 10-68 (72)
72 2ysj_A Tripartite motif-contai 99.3 8.5E-12 2.9E-16 93.8 7.5 48 158-205 14-63 (63)
73 1oyz_A Hypothetical protein YI 99.3 2.2E-10 7.6E-15 113.1 19.9 201 295-533 19-220 (280)
74 2ckl_B Ubiquitin ligase protei 99.3 1.7E-12 5.7E-17 118.0 3.7 70 160-229 50-121 (165)
75 4fdd_A Transportin-1; heat rep 99.3 5.7E-11 1.9E-15 136.1 16.6 280 257-536 128-473 (852)
76 1jm7_B BARD1, BRCA1-associated 99.3 1.7E-12 6E-17 110.7 3.0 69 160-231 18-87 (117)
77 4ayc_A E3 ubiquitin-protein li 99.2 3.7E-12 1.3E-16 112.0 4.0 64 162-228 51-114 (138)
78 1jm7_A BRCA1, breast cancer ty 99.2 7.1E-12 2.4E-16 106.1 4.3 67 162-228 19-87 (112)
79 3knv_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 112.1 1.4 69 158-226 25-102 (141)
80 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.9E-16 93.1 3.9 55 163-217 2-61 (65)
81 1rmd_A RAG1; V(D)J recombinati 99.2 8.6E-12 2.9E-16 106.2 2.9 67 160-226 19-86 (116)
82 3hcs_A TNF receptor-associated 99.1 1.6E-11 5.4E-16 112.1 4.1 69 158-226 12-80 (170)
83 2ecj_A Tripartite motif-contai 99.1 8.1E-11 2.8E-15 86.7 5.3 46 160-205 11-58 (58)
84 3ng2_A RNF4, snurf, ring finge 99.1 2.3E-11 7.9E-16 93.7 2.4 57 160-217 6-69 (71)
85 2ct2_A Tripartite motif protei 99.1 1.4E-10 4.9E-15 93.3 7.1 54 159-212 10-69 (88)
86 1b3u_A Protein (protein phosph 99.1 2.1E-09 7.3E-14 117.0 18.0 227 257-492 164-392 (588)
87 4fdd_A Transportin-1; heat rep 99.1 3.8E-10 1.3E-14 129.2 12.4 273 257-534 215-512 (852)
88 2d8t_A Dactylidin, ring finger 99.1 7E-11 2.4E-15 91.0 4.1 50 161-211 12-61 (71)
89 1ibr_B P95, importin beta-1 su 99.1 7.7E-10 2.6E-14 116.7 13.4 274 257-536 128-439 (462)
90 2ea6_A Ring finger protein 4; 99.0 1.8E-10 6.3E-15 88.0 4.8 51 160-211 11-68 (69)
91 1b3u_A Protein (protein phosph 99.0 5.1E-09 1.7E-13 114.0 18.1 266 257-534 87-353 (588)
92 1e4u_A Transcriptional repress 99.0 3.1E-10 1.1E-14 88.6 5.4 55 160-214 7-65 (78)
93 2xeu_A Ring finger protein 4; 99.0 9.9E-11 3.4E-15 88.1 1.7 54 163-217 2-62 (64)
94 2ect_A Ring finger protein 126 99.0 4.9E-10 1.7E-14 88.0 5.5 57 160-217 11-70 (78)
95 2vgl_B AP-2 complex subunit be 99.0 4.9E-08 1.7E-12 106.9 22.6 266 256-534 120-419 (591)
96 2vgl_B AP-2 complex subunit be 98.9 9.5E-09 3.2E-13 112.6 14.3 260 257-535 49-312 (591)
97 4gmo_A Putative uncharacterize 98.8 1.4E-08 4.7E-13 113.1 13.4 192 341-533 35-257 (684)
98 2ecm_A Ring finger and CHY zin 98.8 1.8E-09 6.1E-14 78.4 4.2 47 163-210 4-54 (55)
99 4gmo_A Putative uncharacterize 98.8 8.5E-09 2.9E-13 114.8 11.6 191 300-491 35-257 (684)
100 2ecn_A Ring finger protein 141 98.8 9.3E-10 3.2E-14 84.4 2.7 52 160-213 11-62 (70)
101 1chc_A Equine herpes virus-1 r 98.8 1.5E-09 5.1E-14 82.7 3.7 47 163-210 4-51 (68)
102 2kiz_A E3 ubiquitin-protein li 98.8 4.7E-09 1.6E-13 80.1 5.8 50 161-211 11-63 (69)
103 1iym_A EL5; ring-H2 finger, ub 98.8 2.6E-09 8.9E-14 77.6 4.0 48 162-210 3-54 (55)
104 2ep4_A Ring finger protein 24; 98.8 4.1E-09 1.4E-13 81.7 5.3 52 160-212 11-65 (74)
105 1bor_A Transcription factor PM 98.8 1.3E-09 4.5E-14 79.4 2.0 46 162-211 4-49 (56)
106 2l0b_A E3 ubiquitin-protein li 98.8 4E-09 1.4E-13 85.3 4.3 50 161-211 37-89 (91)
107 1qgr_A Protein (importin beta 98.8 2E-07 7E-12 106.4 19.8 273 257-535 128-438 (876)
108 4ap4_A E3 ubiquitin ligase RNF 98.8 1.9E-09 6.6E-14 93.8 2.2 54 162-216 5-65 (133)
109 1x4j_A Ring finger protein 38; 98.7 6.5E-09 2.2E-13 80.8 4.4 50 161-211 20-72 (75)
110 2bpt_A Importin beta-1 subunit 98.7 4.8E-08 1.6E-12 111.4 12.8 274 258-535 370-669 (861)
111 1v87_A Deltex protein 2; ring- 98.7 1E-08 3.6E-13 86.7 4.9 49 163-211 24-94 (114)
112 1qgr_A Protein (importin beta 98.7 1.9E-07 6.4E-12 106.7 16.4 276 256-537 171-482 (876)
113 1w63_A Adapter-related protein 98.7 7.2E-07 2.4E-11 98.1 19.7 252 257-535 142-415 (618)
114 1w63_A Adapter-related protein 98.7 1.2E-06 4E-11 96.4 21.1 256 258-534 71-379 (618)
115 4ic3_A E3 ubiquitin-protein li 98.7 5.1E-09 1.7E-13 81.1 1.4 46 161-211 21-67 (74)
116 1ibr_B P95, importin beta-1 su 98.6 6.1E-08 2.1E-12 102.0 9.7 267 260-534 93-395 (462)
117 2y1n_A E3 ubiquitin-protein li 98.6 1.7E-08 5.8E-13 102.0 4.8 49 164-212 332-380 (389)
118 2bpt_A Importin beta-1 subunit 98.6 5E-07 1.7E-11 102.9 17.6 274 257-535 134-441 (861)
119 3b2a_A TON_1937, putative unch 98.6 4.9E-06 1.7E-10 77.1 19.6 215 255-485 31-254 (265)
120 2ecg_A Baculoviral IAP repeat- 98.5 8.3E-09 2.8E-13 80.1 -0.7 46 161-211 22-68 (75)
121 1u6g_C TIP120 protein, CAND1; 98.5 8.7E-08 3E-12 114.0 7.2 272 257-535 6-285 (1230)
122 4ap4_A E3 ubiquitin ligase RNF 98.5 1.9E-08 6.5E-13 87.4 0.3 56 161-217 69-131 (133)
123 2qk2_A LP04448P; mini spindles 98.5 9.9E-07 3.4E-11 84.8 11.8 186 343-536 18-207 (242)
124 2ecl_A Ring-box protein 2; RNF 98.4 1.1E-07 3.8E-12 74.8 3.8 48 163-211 14-76 (81)
125 2qk2_A LP04448P; mini spindles 98.4 9.9E-07 3.4E-11 84.8 10.6 182 261-452 19-206 (242)
126 2vje_A E3 ubiquitin-protein li 98.4 1.6E-07 5.4E-12 70.3 3.7 48 162-210 6-56 (64)
127 1wim_A KIAA0161 protein; ring 98.3 8.8E-08 3E-12 77.8 1.3 66 163-229 4-83 (94)
128 2vje_B MDM4 protein; proto-onc 98.3 2.4E-07 8.2E-12 69.0 3.2 47 163-210 6-55 (63)
129 1u6g_C TIP120 protein, CAND1; 98.3 1.2E-06 4E-11 104.3 10.8 231 255-494 46-286 (1230)
130 2vgl_A Adaptor protein complex 98.3 4.8E-05 1.6E-09 83.5 22.1 255 257-534 146-433 (621)
131 3dpl_R Ring-box protein 1; ubi 98.3 4.8E-07 1.6E-11 74.8 4.7 47 163-210 36-100 (106)
132 2yho_A E3 ubiquitin-protein li 98.2 2.1E-07 7.1E-12 72.8 0.7 45 162-211 16-61 (79)
133 1te4_A Conserved protein MTH18 98.2 2.3E-07 8E-12 80.2 0.9 120 298-448 11-130 (131)
134 2vgl_A Adaptor protein complex 98.2 9.3E-05 3.2E-09 81.1 21.8 256 257-535 111-399 (621)
135 3b2a_A TON_1937, putative unch 98.2 1.2E-05 3.9E-10 74.6 11.9 221 300-532 34-259 (265)
136 2qk1_A Protein STU2; STU2P, XM 98.2 6.3E-06 2.2E-10 79.6 10.5 189 262-451 21-220 (249)
137 1ho8_A Vacuolar ATP synthase s 98.2 1.5E-05 5.1E-10 82.4 13.6 263 268-533 136-475 (480)
138 3t6p_A Baculoviral IAP repeat- 98.2 3.5E-07 1.2E-11 92.0 1.0 46 161-211 292-338 (345)
139 2ea5_A Cell growth regulator w 98.1 2.4E-06 8.2E-11 64.6 5.2 45 162-211 13-58 (68)
140 2qk1_A Protein STU2; STU2P, XM 98.1 1.1E-05 3.6E-10 78.0 10.6 191 345-536 21-222 (249)
141 1te4_A Conserved protein MTH18 98.1 2.3E-07 7.8E-12 80.3 -1.3 120 257-408 12-131 (131)
142 2d8s_A Cellular modulator of i 98.0 6.9E-06 2.4E-10 64.0 6.1 51 161-211 12-70 (80)
143 3dad_A FH1/FH2 domain-containi 98.0 0.00011 3.6E-09 72.5 15.0 178 256-433 117-316 (339)
144 4ady_A RPN2, 26S proteasome re 98.0 0.00032 1.1E-08 78.7 20.5 235 258-534 430-676 (963)
145 3dad_A FH1/FH2 domain-containi 97.9 0.0002 6.9E-09 70.5 15.4 180 344-523 122-325 (339)
146 4a0k_B E3 ubiquitin-protein li 97.9 1.7E-06 5.7E-11 72.5 0.3 46 164-210 48-111 (117)
147 2iw3_A Elongation factor 3A; a 97.8 0.0014 4.8E-08 74.3 22.7 260 257-537 54-327 (986)
148 3tjz_B Coatomer subunit gamma; 97.7 0.00029 1E-08 71.0 13.4 248 259-538 70-320 (355)
149 3tjz_B Coatomer subunit gamma; 97.7 0.00024 8.1E-09 71.7 12.5 265 214-526 78-345 (355)
150 1ho8_A Vacuolar ATP synthase s 97.7 0.00033 1.1E-08 72.4 12.7 229 262-492 172-476 (480)
151 2db0_A 253AA long hypothetical 97.7 0.0065 2.2E-07 54.1 19.0 212 299-533 32-245 (253)
152 4ady_A RPN2, 26S proteasome re 97.4 0.033 1.1E-06 62.6 25.6 241 256-533 471-718 (963)
153 2db0_A 253AA long hypothetical 97.4 0.053 1.8E-06 48.4 21.6 215 255-492 30-246 (253)
154 3vk6_A E3 ubiquitin-protein li 97.1 0.00033 1.1E-08 55.5 3.9 46 166-211 3-49 (101)
155 2ct0_A Non-SMC element 1 homol 97.1 0.00055 1.9E-08 52.1 4.7 47 164-210 15-63 (74)
156 4ffb_C Protein STU2; tubulin f 97.1 0.0059 2E-07 59.4 13.2 186 262-452 14-213 (278)
157 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00058 2E-08 49.8 4.3 48 163-210 5-58 (60)
158 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0045 1.5E-07 64.5 11.6 243 258-530 175-432 (800)
159 2iw3_A Elongation factor 3A; a 96.9 0.0073 2.5E-07 68.5 13.3 264 257-535 14-281 (986)
160 2fv2_A RCD1 required for cell 96.8 0.16 5.5E-06 47.8 19.6 226 258-490 4-266 (268)
161 2of3_A ZYG-9; multifunctional 96.5 0.049 1.7E-06 52.3 14.6 179 260-450 49-235 (266)
162 1wa5_C Importin alpha RE-expor 96.5 0.058 2E-06 62.1 18.1 254 273-535 377-671 (960)
163 4ffb_C Protein STU2; tubulin f 96.3 0.029 1E-06 54.4 11.9 186 345-536 14-214 (278)
164 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.0008 2.8E-08 65.9 0.2 48 163-210 307-372 (381)
165 2fv2_A RCD1 required for cell 95.6 0.24 8.3E-06 46.6 14.1 100 439-538 73-178 (268)
166 1upk_A MO25 protein; transfera 95.5 0.14 4.8E-06 50.3 12.5 196 257-454 78-286 (341)
167 1wa5_C Importin alpha RE-expor 95.5 0.36 1.2E-05 55.5 18.2 218 268-491 416-669 (960)
168 3ebb_A Phospholipase A2-activa 95.4 0.31 1.1E-05 47.8 14.8 136 394-531 161-303 (304)
169 2x1g_F Cadmus; transport prote 95.0 1.1 3.6E-05 51.5 20.4 174 352-535 476-664 (971)
170 3ebb_A Phospholipase A2-activa 94.7 0.23 7.9E-06 48.7 11.8 135 353-487 161-301 (304)
171 1lrv_A LRV, leucine-rich repea 94.7 0.055 1.9E-06 51.4 6.9 172 288-529 63-241 (244)
172 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.013 4.5E-07 47.5 2.1 33 163-195 2-37 (101)
173 3i2d_A E3 SUMO-protein ligase 94.5 0.033 1.1E-06 55.5 5.0 63 164-226 249-315 (371)
174 2x1g_F Cadmus; transport prote 94.4 1 3.5E-05 51.6 18.2 214 311-535 476-723 (971)
175 2f31_A Diaphanous protein homo 94.4 1.1 3.8E-05 42.0 15.2 169 262-430 5-207 (233)
176 3u0r_A Apoptosis inhibitor 5; 94.3 1.5 5.2E-05 45.1 16.8 130 259-407 31-160 (507)
177 1lrv_A LRV, leucine-rich repea 93.9 0.025 8.6E-07 53.8 2.8 44 302-362 101-144 (244)
178 4fo9_A E3 SUMO-protein ligase 93.7 0.058 2E-06 53.6 5.0 64 163-226 214-281 (360)
179 3eg5_B Protein diaphanous homo 93.7 2.1 7.1E-05 43.4 16.7 172 260-433 69-275 (383)
180 2x19_B Importin-13; nuclear tr 93.4 2.6 8.9E-05 48.1 19.1 214 309-533 459-713 (963)
181 2of3_A ZYG-9; multifunctional 93.3 0.6 2E-05 44.7 11.3 189 343-544 49-247 (266)
182 3nw0_A Non-structural maintena 92.8 0.079 2.7E-06 50.0 4.2 49 164-212 180-230 (238)
183 1upk_A MO25 protein; transfera 92.5 5.3 0.00018 39.2 16.7 172 376-549 73-256 (341)
184 2bnx_A Diaphanous protein homo 92.3 3.9 0.00013 41.4 16.4 178 260-438 7-219 (386)
185 2x19_B Importin-13; nuclear tr 92.3 2.4 8.3E-05 48.3 16.7 174 350-533 459-645 (963)
186 3oc3_A Helicase MOT1, MOT1; re 91.4 1.3 4.5E-05 46.5 11.4 185 272-487 243-431 (800)
187 2f31_A Diaphanous protein homo 90.7 2.2 7.7E-05 39.9 11.8 129 395-523 68-217 (233)
188 3eg5_B Protein diaphanous homo 90.5 3.2 0.00011 41.9 13.5 143 380-522 108-282 (383)
189 3ibv_A Exportin-T; karyopherin 89.9 18 0.0006 41.4 20.6 286 217-534 21-361 (980)
190 4hat_C Exportin-1; heat repeat 89.5 2.3 7.9E-05 48.9 12.9 140 352-494 465-620 (1023)
191 3m1i_C Exportin-1; heat repeat 88.6 18 0.00062 41.6 19.8 138 352-492 465-618 (1049)
192 1weo_A Cellulose synthase, cat 87.7 0.98 3.3E-05 34.7 5.3 48 163-210 15-69 (93)
193 3ibv_A Exportin-T; karyopherin 87.6 17 0.00057 41.6 18.3 216 258-494 7-262 (980)
194 3u0r_A Apoptosis inhibitor 5; 87.6 3.8 0.00013 42.2 11.4 120 392-529 39-158 (507)
195 2bnx_A Diaphanous protein homo 87.2 5.6 0.00019 40.2 12.6 130 395-524 72-222 (386)
196 1lsh_A Lipovitellin (LV-1N, LV 86.4 21 0.00071 41.2 18.3 236 258-535 312-577 (1056)
197 3c2g_A SYS-1 protein; beta-cat 86.1 16 0.00053 36.0 14.1 128 405-533 266-402 (619)
198 3m1i_C Exportin-1; heat repeat 85.4 6.7 0.00023 45.3 13.7 185 299-493 344-570 (1049)
199 4hat_C Exportin-1; heat repeat 83.5 2.9 0.0001 48.1 9.4 99 394-493 466-570 (1023)
200 1lsh_A Lipovitellin (LV-1N, LV 82.7 19 0.00066 41.5 15.9 165 300-494 392-578 (1056)
201 3qml_C Protein SLS1, nucleotid 82.4 9.4 0.00032 36.9 10.8 145 342-491 24-188 (315)
202 3l9t_A Putative uncharacterize 81.5 11 0.00038 35.0 10.7 144 342-504 73-219 (240)
203 1mhq_A ADP-ribosylation factor 80.6 5.2 0.00018 34.4 7.7 75 254-328 35-116 (148)
204 3gjx_A Exportin-1; transport, 79.3 14 0.00048 42.6 13.0 220 255-493 26-276 (1073)
205 1x5b_A Signal transducing adap 78.5 5.2 0.00018 35.0 7.2 74 255-328 50-125 (163)
206 3l9t_A Putative uncharacterize 78.0 20 0.0007 33.2 11.2 139 257-415 70-212 (240)
207 3qml_C Protein SLS1, nucleotid 77.2 22 0.00077 34.3 11.5 147 382-534 23-189 (315)
208 3c2g_A SYS-1 protein; beta-cat 77.1 56 0.0019 32.2 14.2 170 283-453 268-475 (619)
209 3ldz_A STAM-1, signal transduc 76.1 6.1 0.00021 33.6 6.7 75 254-328 39-114 (140)
210 1juq_A ADP-ribosylation factor 75.5 7 0.00024 34.5 7.2 74 255-328 48-128 (171)
211 2cs3_A Protein C14ORF4, MY039 75.1 6.7 0.00023 29.4 5.6 43 162-204 13-63 (93)
212 3a6p_A Exportin-5; exportin-5, 73.0 47 0.0016 38.8 15.5 214 259-494 13-278 (1204)
213 3g2s_A C-terminal fragment of 71.0 13 0.00045 31.9 7.6 75 254-328 45-126 (149)
214 3a6p_A Exportin-5; exportin-5, 69.1 1.8E+02 0.006 34.0 19.2 250 267-527 57-373 (1204)
215 3gs3_A Symplekin, LD45768P; he 69.0 72 0.0025 30.0 13.0 146 256-409 14-172 (257)
216 3mjh_B Early endosome antigen 67.5 1 3.5E-05 28.2 -0.2 16 163-178 4-19 (34)
217 3ldz_A STAM-1, signal transduc 64.7 10 0.00034 32.2 5.5 72 464-535 43-115 (140)
218 1x5b_A Signal transducing adap 64.6 16 0.00053 32.0 6.9 72 464-535 53-126 (163)
219 1mhq_A ADP-ribosylation factor 61.1 17 0.00059 31.1 6.4 72 464-535 39-117 (148)
220 3zyq_A Hepatocyte growth facto 60.5 15 0.00052 33.9 6.4 74 255-328 43-118 (226)
221 3o2t_A Symplekin; heat repeat, 58.0 95 0.0032 31.0 12.1 145 256-409 24-182 (386)
222 1juq_A ADP-ribosylation factor 57.3 17 0.00059 31.9 5.9 73 464-536 51-130 (171)
223 1dvp_A HRS, hepatocyte growth 56.7 19 0.00065 33.1 6.4 74 255-328 40-115 (220)
224 1elk_A Target of MYB1; superhe 56.3 30 0.001 29.9 7.2 74 255-328 51-130 (157)
225 2ko5_A Ring finger protein Z; 55.8 8.9 0.0003 29.8 3.1 51 160-213 24-75 (99)
226 2jvx_A NF-kappa-B essential mo 55.5 2.8 9.5E-05 24.9 0.2 15 163-177 2-16 (28)
227 3gae_A Protein DOA1; UFD3, CDC 54.2 11 0.00038 35.5 4.4 101 392-495 101-220 (253)
228 1m3v_A FLIN4, fusion of the LI 52.8 7.9 0.00027 31.9 2.7 52 162-214 30-84 (122)
229 3g2s_A C-terminal fragment of 52.8 24 0.00083 30.2 5.9 73 464-536 49-128 (149)
230 2k5c_A Uncharacterized protein 49.6 3.8 0.00013 30.7 0.2 53 165-217 9-69 (95)
231 3gae_A Protein DOA1; UFD3, CDC 48.9 19 0.00065 33.9 5.1 101 350-452 100-218 (253)
232 2o35_A Hypothetical protein DU 47.4 7.9 0.00027 30.3 1.7 13 185-197 42-54 (105)
233 3fyb_A Protein of unknown func 46.6 8.3 0.00028 30.1 1.7 13 185-197 41-53 (104)
234 1vdy_A Hypothetical protein (R 45.7 34 0.0012 28.9 5.6 71 464-534 50-130 (140)
235 3gs3_A Symplekin, LD45768P; he 45.6 1.9E+02 0.0066 26.9 15.7 107 339-450 52-172 (257)
236 6rxn_A Rubredoxin; electron tr 44.5 7.1 0.00024 26.2 0.9 13 160-172 26-38 (46)
237 3pst_A Protein DOA1; protein d 44.2 1.1E+02 0.0038 31.0 10.0 107 392-501 273-398 (425)
238 3gjx_A Exportin-1; transport, 43.5 45 0.0015 38.4 7.9 98 353-451 492-595 (1073)
239 1dvp_A HRS, hepatocyte growth 43.1 44 0.0015 30.5 6.5 72 464-535 43-116 (220)
240 3lay_A Zinc resistance-associa 42.5 54 0.0018 28.9 6.6 58 23-83 66-123 (175)
241 3zyq_A Hepatocyte growth facto 41.2 31 0.001 31.8 5.1 72 464-535 46-119 (226)
242 2xpp_A IWS1, ECU08_0440; trans 40.5 1.4E+02 0.0049 25.2 8.7 79 451-533 49-135 (145)
243 1e8j_A Rubredoxin; iron-sulfur 40.3 11 0.00036 26.1 1.3 13 160-172 32-44 (52)
244 2xqn_T Testin, TESS; metal-bin 38.7 19 0.00066 29.5 3.0 47 162-211 28-75 (126)
245 4rxn_A Rubredoxin; electron tr 38.6 9.8 0.00034 26.5 0.9 13 160-172 32-44 (54)
246 2xjy_A Rhombotin-2; oncoprotei 36.9 20 0.00068 29.6 2.8 49 162-211 27-78 (131)
247 2ct7_A Ring finger protein 31; 36.6 12 0.00042 28.7 1.3 29 166-194 27-61 (86)
248 3l3f_X Protein DOA1, DOA1/UFD3 35.8 97 0.0033 30.7 8.0 104 392-498 210-332 (362)
249 2kkx_A Uncharacterized protein 35.0 39 0.0013 26.5 3.8 52 161-213 24-81 (102)
250 2kn9_A Rubredoxin; metalloprot 34.8 14 0.00048 28.0 1.3 13 160-172 56-68 (81)
251 1yk4_A Rubredoxin, RD; electro 34.3 13 0.00043 25.7 0.9 13 160-172 31-43 (52)
252 2v3b_B Rubredoxin 2, rubredoxi 33.6 13 0.00044 26.0 0.9 13 160-172 32-44 (55)
253 3pwf_A Rubrerythrin; non heme 32.7 76 0.0026 27.7 6.0 14 162-175 136-149 (170)
254 3vhs_A ATPase wrnip1; zinc fin 31.8 10 0.00034 21.6 0.0 11 165-175 7-17 (29)
255 2ee8_A Protein ODD-skipped-rel 31.8 37 0.0013 26.2 3.5 15 162-176 15-29 (106)
256 1elk_A Target of MYB1; superhe 31.4 1E+02 0.0034 26.5 6.5 72 464-535 54-131 (157)
257 2jtn_A LIM domain-binding prot 31.3 49 0.0017 29.1 4.6 48 162-212 85-132 (182)
258 1x61_A Thyroid receptor intera 31.1 64 0.0022 23.1 4.5 36 162-197 31-67 (72)
259 1vdy_A Hypothetical protein (R 30.6 1.2E+02 0.0042 25.4 6.7 43 256-298 48-91 (140)
260 1dx8_A Rubredoxin; electron tr 30.6 15 0.00053 27.0 0.9 13 160-172 36-48 (70)
261 2rgt_A Fusion of LIM/homeobox 29.9 54 0.0018 28.4 4.6 47 162-211 31-77 (169)
262 2xpp_A IWS1, ECU08_0440; trans 29.7 2.5E+02 0.0087 23.6 8.9 77 409-489 48-133 (145)
263 2jne_A Hypothetical protein YF 28.9 2.4 8.2E-05 33.1 -3.8 41 164-210 32-72 (101)
264 3uk3_C Zinc finger protein 217 28.6 17 0.00058 24.4 0.8 40 164-210 4-43 (57)
265 2lv2_A Insulinoma-associated p 28.1 82 0.0028 23.7 4.8 38 162-210 26-67 (85)
266 1rut_X Flinc4, fusion protein 27.6 12 0.00043 33.3 -0.1 48 162-211 30-81 (188)
267 1s24_A Rubredoxin 2; electron 27.2 19 0.00066 27.7 0.9 13 160-172 64-76 (87)
268 3nfq_A Transcription factor IW 26.4 2.2E+02 0.0075 24.8 7.6 79 451-533 64-150 (170)
269 2d8x_A Protein pinch; LIM doma 26.0 45 0.0015 23.9 2.8 35 162-196 29-64 (70)
270 1wil_A KIAA1045 protein; ring 25.7 1.1E+02 0.0038 23.2 4.8 35 160-194 11-47 (89)
271 2l4z_A DNA endonuclease RBBP8, 24.3 41 0.0014 27.6 2.5 38 164-210 61-99 (123)
272 1iml_A CRIP, cysteine rich int 24.1 56 0.0019 23.8 3.1 46 162-210 25-72 (76)
273 2cup_A Skeletal muscle LIM-pro 23.7 51 0.0018 25.5 3.0 47 162-211 31-78 (101)
274 4dzn_A Coiled-coil peptide CC- 23.3 64 0.0022 18.8 2.4 15 88-102 5-19 (33)
275 2dar_A PDZ and LIM domain prot 23.3 58 0.002 24.7 3.1 29 165-193 52-81 (90)
276 2d8z_A Four and A half LIM dom 23.2 60 0.002 23.1 3.1 34 162-195 29-63 (70)
277 3pst_A Protein DOA1; protein d 22.5 3E+02 0.01 27.8 8.9 109 433-544 273-399 (425)
278 3itf_A Periplasmic adaptor pro 22.1 3.5E+02 0.012 22.7 8.1 59 19-83 40-98 (145)
279 2cur_A Skeletal muscle LIM-pro 22.1 80 0.0027 22.3 3.6 35 162-196 29-64 (69)
280 3vld_A DNA mismatch repair pro 21.2 6.8E+02 0.023 25.7 11.7 96 376-476 111-209 (500)
281 1bbo_A Human enhancer-binding 20.9 18 0.00063 24.2 -0.3 35 165-210 2-40 (57)
282 1wig_A KIAA1808 protein; LIM d 20.6 41 0.0014 24.5 1.7 35 162-196 29-65 (73)
283 2gqj_A Zinc finger protein KIA 20.5 38 0.0013 26.0 1.5 41 163-210 23-65 (98)
284 3l3f_X Protein DOA1, DOA1/UFD3 20.3 2.7E+02 0.0093 27.4 8.0 109 433-544 210-336 (362)
285 1nyp_A Pinch protein; LIM doma 20.2 49 0.0017 23.3 2.0 34 162-195 29-63 (66)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=1.2e-31 Score=274.74 Aligned_cols=267 Identities=20% Similarity=0.214 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-----------CCHHHHHHHHHHHHhcccCCc-cchhhh-
Q 008486 271 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNLSICED-NKGSIV- 337 (564)
Q Consensus 271 ~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~i~~~A~~~L~nLs~~~~-~~~~i~- 337 (564)
...+..|++.|.+++. ++++|..+++.|+++.|+.+|.+ .++.+|.+|+++|.||+.+++ +|..|.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556789999999997 58999999999999999999952 246799999999999998665 677776
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC--cchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-ccC
Q 008486 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCI-YQG 413 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~ 413 (564)
..|+|+.|+.+|+++++++++.|+++|.+|+.. ++++..+.+.|++++|+++| ++++..+++.|+.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 456699999999999999999999999999985 46899999999999999975 66789999999999999999 667
Q ss_pred hhHHHH-HcCChHHHHHhccCCCc----chHHHHHHHHHHhcC----ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 008486 414 NKGKAV-RAGVVPTLMHLLTEPGG----GMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAA 484 (564)
Q Consensus 414 ~~~~i~-~~g~i~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~ 484 (564)
++..++ ..|+++.|+.+|.+++. .+++.|+++|.||+. .++++..+.+.|+++.|+.+|++++..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 888888 78999999999987554 489999999999995 889999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008486 485 AVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 485 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
++|+||+.+++..+..+.+.|+++.|+.++.++++++++.|.++|.+|....+.
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999988999999999999999999999999999999999999999976543
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=5.2e-31 Score=281.08 Aligned_cols=278 Identities=24% Similarity=0.267 Sum_probs=243.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC-Cccchhh
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSI 336 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~-~~~~~~i 336 (564)
.++.|++.|++++++.|..|+..|++++.+++.++..+++.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 478999999999999999999999999988888898999999999999999999999999999999999986 7889999
Q ss_pred hccCChHHHHHHHh-cCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc--------cC--------CHHHHH
Q 008486 337 VSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS--------EG--------TQRGKK 399 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 399 (564)
++.|+++.|+++|+ ++++++++.|+++|++|+..++++..+.+ |++++|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 22 456677
Q ss_pred HHHHHHHHhhcccChhHHHHHc-CChHHHHHhccC------CCcchHHHHHHHHHHhcCC--------------------
Q 008486 400 DAATALFNLCIYQGNKGKAVRA-GVVPTLMHLLTE------PGGGMVDEALAILAILSSH-------------------- 452 (564)
Q Consensus 400 ~a~~aL~nL~~~~~~~~~i~~~-g~i~~Lv~lL~~------~~~~~~~~al~~L~~L~~~-------------------- 452 (564)
.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+++.|+.+|.+|+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998888888887 999999999975 4567899999999999732
Q ss_pred -------------------------------hhhHHHHHhcCChHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHHH---
Q 008486 453 -------------------------------PEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVLVHLCAGDQQY--- 497 (564)
Q Consensus 453 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-~~~~k~~A~~~L~~L~~~~~~~--- 497 (564)
+.+.+.+.+.|+++.|+.+|.+. ++.+++.|+++|+|||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 12333455667889999999764 5899999999999999865432
Q ss_pred H-HHH-HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 498 L-AEA-KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 498 ~-~~~-~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
. +.+ .+.|+++.|+.++.+++.++++.|+++|++|+...
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 1 333 46899999999999999999999999999998754
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=5e-30 Score=285.06 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=266.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-----------------------------hhH---HHHHHhCCHH
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-----------------------------DNR---VAIAEAGAIP 302 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~ 302 (564)
+.+.++.||+.|++++...+..|++.|.+++.+.+ .++ ..+++.|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 46899999999999999999999999999997542 123 6788999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh---h
Q 008486 303 LLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG---A 379 (564)
Q Consensus 303 ~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~---~ 379 (564)
.|+.+|+++++.+|+.|+++|.||+.+.++|..+++.|++++|+.+|++++...++.|+++|.+|+........+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999988899999999999999999999999999999999999987644333221 1
Q ss_pred cCChHHHHHhhccC-CHHHHHHHHHHHHHhhccc-ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHH
Q 008486 380 SGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ-GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 380 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
.|++++|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.++++.++..|+++|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 37999999999866 4455679999999999985 668889999999999999999999999999999999999999988
Q ss_pred HHHh-cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 458 AIGA-AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 458 ~i~~-~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
.+++ .|+++.|+.++.+.+..++..|+++|.||+.+++...+.+++ .|+++.|+.++.+++..+++.|.++|.++...
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 8885 689999999999999999999999999999988888889988 89999999999999999999999999999987
Q ss_pred HHHHHHHhhchhhHHHHH
Q 008486 536 IEQQKQAQVQTESQSQIQ 553 (564)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~ 553 (564)
.....+.+.+.+.+.-+.
T Consensus 739 s~e~~~~l~e~G~i~~L~ 756 (810)
T 3now_A 739 GEEIAKKLFETDIMELLS 756 (810)
T ss_dssp CHHHHHHHHTSTHHHHHT
T ss_pred CHHHHHHHHHCCCHHHHH
Confidence 777788888887776554
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=273.29 Aligned_cols=262 Identities=20% Similarity=0.217 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-----------CCHHHHHHHHHHHHhcccCCc-cchhhh-ccC
Q 008486 274 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNLSICED-NKGSIV-SSG 340 (564)
Q Consensus 274 ~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~i~~~A~~~L~nLs~~~~-~~~~i~-~~g 340 (564)
+++|++.|.+++. ++++|..+.+.|++++|+.+|.. .++.++++|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 5589999999985 69999999999999999999952 246789999999999998765 566665 456
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHhccCC--cchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-ccChhH
Q 008486 341 AVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCI-YQGNKG 416 (564)
Q Consensus 341 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~~~ 416 (564)
+|+.|+.+|++++.++++.|+++|.+|+.. +.++..+.+.|++++|+++| .+++..+++.|+.+|+||+. +++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999985 46889999999999999975 56789999999999999999 668888
Q ss_pred HHH-HcCChHHHHHhccCCCc----chHHHHHHHHHHhc----CChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 008486 417 KAV-RAGVVPTLMHLLTEPGG----GMVDEALAILAILS----SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 487 (564)
Q Consensus 417 ~i~-~~g~i~~Lv~lL~~~~~----~~~~~al~~L~~L~----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L 487 (564)
.++ ..|+++.|+.+|.+.+. .+++.|+++|.||+ .+++++..+++.|+++.|+.+|++++..+++.|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 888 78999999999987554 38999999999998 4889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 488 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 488 ~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
+||+.++++.+..+.+.|+++.|+.++.++++++++.|.++|++|....
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999889999999999999999999999999999999999999998643
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=7e-30 Score=275.16 Aligned_cols=294 Identities=23% Similarity=0.303 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC--Cccc
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC--EDNK 333 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~--~~~~ 333 (564)
...++.||++|.+++++.|..|+..|.+++.++.++|..+++.|+||.|+.+|++++..+|+.|+++|.||+.. +++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 35799999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred hhhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc------------------cCC
Q 008486 334 GSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS------------------EGT 394 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~ 394 (564)
..|++.|+|+.|+.+|++ ++.+++++|+++|++||.+++++..|++ +++++|+.++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999998 4789999999999999999999999985 57999999872 225
Q ss_pred HHHHHHHHHHHHHhhcccCh-hHHHHH-cCChHHHHHhccC------CCcchHHHHHHHHHHhcCChh------------
Q 008486 395 QRGKKDAATALFNLCIYQGN-KGKAVR-AGVVPTLMHLLTE------PGGGMVDEALAILAILSSHPE------------ 454 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~-~~~i~~-~g~i~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~~------------ 454 (564)
..+++.|+++|.||+...++ +..+++ .|+++.|+.+|.+ .+...++.|+++|.||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 78999999999999998755 888887 4677899999864 456789999999999986521
Q ss_pred --------------hHHHHHhcCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH----HHHHHHHHcCCHHHHHHhhh
Q 008486 455 --------------GKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ----QYLAEAKELGVMGPLVDLAQ 515 (564)
Q Consensus 455 --------------~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~----~~~~~~~~~g~i~~L~~Ll~ 515 (564)
+...+...++++.|+.+|. +.++.+++.|+++|.|||.++. .....+.+.|+++.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1222333456778899996 4579999999999999998762 22334455789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHH
Q 008486 516 NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 552 (564)
Q Consensus 516 ~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~ 552 (564)
+++.++++.|.++|++|...... +..++ .+..+.+
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~~-~~~I~-~g~ip~L 400 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDARN-KELIG-KHAIPNL 400 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSC-HHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCChhH-HHHHH-hCCHHHH
Confidence 99999999999999999976532 33443 3444433
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=269.69 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=260.9
Q ss_pred hhhhHHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCH----------HHHHHhhCCC
Q 008486 254 AERTKIEILLCKLTSG------------SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAI----------PLLVGLLSTP 311 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~------------~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~~~ 311 (564)
...|.++.||+.|+.. +++.|.+|+++|.+++.+.++......+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4568899999999963 37999999999999999999988888888888 7778888764
Q ss_pred C--HH-----HHH-------HHHHHHHhcccCCccchhhhccCChHHHHHHHhc-----------CCHHHHHHHHHHHHh
Q 008486 312 D--SR-----TQE-------HAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-----------GSMEARENAAATLFS 366 (564)
Q Consensus 312 ~--~~-----i~~-------~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~a~~~L~~ 366 (564)
. .+ +++ +|+++|.|++.++++|..|++.|++++|+.+|.. .+++++.+|+++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 2 22 444 8999999999999999999999999999999952 246789999999999
Q ss_pred ccCCcc-hhhHhhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcc--cChhHHHHHcCChHHHHHhc-cCCCcchHHH
Q 008486 367 LSVIDE-NKVTIGA-SGAIPPLVTLLSEGTQRGKKDAATALFNLCIY--QGNKGKAVRAGVVPTLMHLL-TEPGGGMVDE 441 (564)
Q Consensus 367 Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~ 441 (564)
|+..++ ++..+.. .|+||.|+.+|.+++++++..|+++|.||+.. ++++..+++.|+|+.|+++| .+.+..+++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998875 6666654 47799999999999999999999999999985 46788899999999999985 5577889999
Q ss_pred HHHHHHHhcC-ChhhHHHHH-hcCChHHHHHHHhcCCh----HHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHH
Q 008486 442 ALAILAILSS-HPEGKAAIG-AAEAVPVLVEVIGNGSP----RNRENAAAVLVHLCA---GDQQYLAEAKELGVMGPLVD 512 (564)
Q Consensus 442 al~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~----~~k~~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ 512 (564)
|+.+|+||+. .++++..++ ..|+++.|+.+|.++++ .+++.|+++|.||+. .++.+++.+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999998 778888887 68999999999997764 489999999999997 78899999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHHH
Q 008486 513 LAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQ 553 (564)
Q Consensus 513 Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~ 553 (564)
++.+++..+++.|+++|.+|....+..+..+.+.+..+-+.
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999976777788888877766554
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.6e-29 Score=267.95 Aligned_cols=282 Identities=22% Similarity=0.242 Sum_probs=246.9
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCc
Q 008486 253 PAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 253 ~~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~ 331 (564)
..+.+.++.|++.|++++++.|..|++.|++|+.++++++..+++.|+||.|+++|+ ++++++++.|+++|.||+.+++
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~ 119 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH
Confidence 346689999999999999999999999999999988999999999999999999999 8899999999999999999988
Q ss_pred cchhhhccCChHHHHHHHh--------cC--------CHHHHHHHHHHHHhccCCcchhhHhhhc-CChHHHHHhhccC-
Q 008486 332 NKGSIVSSGAVPSIVHVLR--------IG--------SMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEG- 393 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~--------~~--------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~- 393 (564)
+|..+++ |+++.|+.+|. ++ +.++..+|+++|+||+.+++++..+.+. |+++.|+.+|.++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 8999999 99999999993 33 3456669999999999988889999987 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 008486 394 -------------------------------------------------------------------------------- 393 (564)
Q Consensus 394 -------------------------------------------------------------------------------- 393 (564)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------CHHHHHHHHHHHHHhhcccChh-----HHHH-HcCChHHHHHhccCCCcchHHHHHHHHHHh
Q 008486 394 ------------------TQRGKKDAATALFNLCIYQGNK-----GKAV-RAGVVPTLMHLLTEPGGGMVDEALAILAIL 449 (564)
Q Consensus 394 ------------------~~~~~~~a~~aL~nL~~~~~~~-----~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L 449 (564)
++.+++.|+++|.||+...... ..++ +.|+++.|+++|.+++.+++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 2455667899999999765432 1233 689999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHHHhcCCh------HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHH
Q 008486 450 SSHPEGKAAIGAAEAVPVLVEVIGNGSP------RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGK 522 (564)
Q Consensus 450 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k 522 (564)
+.+++.+..+. .|+++.|+++|..+++ ++...++.+|.++..+++.....+.+.|+++.|+.|+.++ +++++
T Consensus 359 s~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 359 SRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 99888877665 4799999999988643 5778899999999998989999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhH
Q 008486 523 RKAAQLLERMSRFI 536 (564)
Q Consensus 523 ~~A~~lL~~l~~~~ 536 (564)
++|.++|.++....
T Consensus 438 ~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 438 EAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHcch
Confidence 99999999987543
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=8.3e-29 Score=267.86 Aligned_cols=297 Identities=21% Similarity=0.219 Sum_probs=261.0
Q ss_pred hhhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-
Q 008486 253 PAERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE- 330 (564)
Q Consensus 253 ~~~~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~- 330 (564)
..+.|.++.||+.|++ ++++.|..|+++|.+++.++++++..+++.|+||.|+.+|++++.++++.|+++|+||+.+.
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 3456899999999975 56899999999999999999999999999999999999999999999999999999999875
Q ss_pred ccchhhhccCChHHHHHHHhcCC-----HHHHHHHHHHHHhccCCcchhhHh-hhcCChHHHHHhhccCCHHHHHHHHHH
Q 008486 331 DNKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 331 ~~~~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
..+..+.+.|+++.++.+|.+.+ ..+...++++|.+++.+......+ ...++++.|+.++.+++++++..|+++
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45888889999999999998653 457889999999999876544433 345899999999999999999999999
Q ss_pred HHHhhcccChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHH
Q 008486 405 LFNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNREN 482 (564)
Q Consensus 405 L~nL~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~ 482 (564)
|.+|+...+++.. +++.|+++.|+.+|.+++..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.++..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 9999988776654 56889999999999999999999999999999765 566778899999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH-HHHHHHhhchhhH
Q 008486 483 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQVQTESQ 549 (564)
Q Consensus 483 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~-~~~~~~~~~~~~~ 549 (564)
|+++|.||+.+++.....+.+.|+++.|+.++.+++..+++.|+++|.++.... ..+...+.+.+..
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999999999999999999998643 4444445444433
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.3e-28 Score=265.66 Aligned_cols=297 Identities=21% Similarity=0.219 Sum_probs=262.8
Q ss_pred hhhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-
Q 008486 253 PAERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE- 330 (564)
Q Consensus 253 ~~~~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~- 330 (564)
..+.|.++.||+.|.. +++..|..|+++|.+++.++++++..+++.|+||.|+.+|.+++.++++.|+++|+||+.+.
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH
Confidence 3456899999999974 56899999999999999999999999999999999999999999999999999999999865
Q ss_pred ccchhhhccCChHHHHHHHhcCC-----HHHHHHHHHHHHhccCCcchhhH-hhhcCChHHHHHhhccCCHHHHHHHHHH
Q 008486 331 DNKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVIDENKVT-IGASGAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 331 ~~~~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
.++..+.+.|++++|+.+|..++ ..+...++++|.+++.+...... ....+++|.|+.++.+++++++..|+++
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 56889999999999999997653 46788999999999987654443 3445899999999999999999999999
Q ss_pred HHHhhcccChhHH-HHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHH
Q 008486 405 LFNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNREN 482 (564)
Q Consensus 405 L~nL~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~ 482 (564)
|.+|+...+.+.. ++..|+++.|+.+|.+++..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 9999998776654 56889999999999999999999999999999764 567788899999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-HHHHHHHhhchhhH
Q 008486 483 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQTESQ 549 (564)
Q Consensus 483 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~-~~~~~~~~~~~~~~ 549 (564)
|+++|.||+.+++.....+.+.|+++.|+.++.+++..+++.|+++|.++... ...+...+.+.+..
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i 422 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGII 422 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999864 34455555554443
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=2.7e-28 Score=263.77 Aligned_cols=296 Identities=20% Similarity=0.228 Sum_probs=259.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHH-hhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc-CCccc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLA-KRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI-CEDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~-~~~~~ 333 (564)
..++.+|+.++|+|++.|..|+..++++. ++.......+++.|+||.|+.+|+. +++.+|..|+|+|.||+. +++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 35899999999999999999999999864 4333346788999999999999975 468999999999999976 45678
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCC-----HHHHHHHHHHHHH
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGT-----QRGKKDAATALFN 407 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~n 407 (564)
..+++.|+++.|+.+|++++.++++.|+++|.+|+.+. .++..+.+.|++++|+.++...+ ...+..++++|.|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999875 67888899999999999998654 4567899999999
Q ss_pred hhcccChhHHH-HHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 008486 408 LCIYQGNKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 408 L~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
++.+......+ ...|+++.|+.+|.+++.+++..|+++|.+|+..+.. ...+.+.|+++.|+++|.++++.++..|+.
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 99987665443 3468999999999999999999999999999987654 466778899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHHH
Q 008486 486 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 552 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~ 552 (564)
+|.|++.+++.....+++.|+++.|+.++.++++.+++.|+++|.+|....+.+.+.+.+.+..+.+
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999998888887777776665443
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=3.4e-28 Score=262.04 Aligned_cols=287 Identities=22% Similarity=0.258 Sum_probs=240.5
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCc
Q 008486 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~ 331 (564)
.+.+.|+.||++|.+++.++|..|+++|++|+.+ ++++|..|++.|+||.|+.+|++ .+.+++++|+++|+||+.+++
T Consensus 87 ~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~ 166 (584)
T 3l6x_A 87 RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166 (584)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG
T ss_pred HHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 4568999999999999999999999999999985 69999999999999999999997 588999999999999999999
Q ss_pred cchhhhccCChHHHHHHHh------------------cCCHHHHHHHHHHHHhccCCcc-hhhHhhhc-CChHHHHHhhc
Q 008486 332 NKGSIVSSGAVPSIVHVLR------------------IGSMEARENAAATLFSLSVIDE-NKVTIGAS-GAIPPLVTLLS 391 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~------------------~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~-g~i~~Lv~lL~ 391 (564)
+|..|++ ++++.|+++|. ..+.+++++|+++|+||+..++ +|..|.+. |+++.|+.+++
T Consensus 167 ~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 167 IKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999995 57999999872 1247899999999999998864 47777665 44556666654
Q ss_pred c--------------------------------------------------------------------------CCHHH
Q 008486 392 E--------------------------------------------------------------------------GTQRG 397 (564)
Q Consensus 392 ~--------------------------------------------------------------------------~~~~~ 397 (564)
+ .++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 2 23445
Q ss_pred HHHHHHHHHHhhcccC-----hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH
Q 008486 398 KKDAATALFNLCIYQG-----NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI 472 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL 472 (564)
++.|++||.||+.+.. ++..+.+.|+++.|+.+|.+++..++..|+++|.||+.++..+..| ..|+++.|+.+|
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL 404 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHh
Confidence 5566666666655432 1222334688999999999999999999999999999999888766 678999999999
Q ss_pred hcC--------ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHHHHHHHHHhhHHHHHHH
Q 008486 473 GNG--------SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRFIEQQKQA 542 (564)
Q Consensus 473 ~~~--------~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~~~~~~~~ 542 (564)
.++ +..+...|+++|.||+..++.+.+.+.+.|+++.|+.++.++ .+.+++.|.++|.+|+.+.+.++..
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~ 484 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPL 484 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHH
Confidence 876 457888999999999999999999999999999999999987 8999999999999999876654433
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=2.3e-28 Score=271.69 Aligned_cols=295 Identities=17% Similarity=0.141 Sum_probs=253.2
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-
Q 008486 256 RTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED- 331 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~- 331 (564)
...++.++++|.++ +.+.+..|++.|.+|+. .++.|..++ +.|++|.|+.+|+++++.++..|+++|.||+.+.+
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 45678899999987 88999999999999996 667777776 57999999999999999999999999999987432
Q ss_pred -----------------------------cc---hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhh
Q 008486 332 -----------------------------NK---GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA 379 (564)
Q Consensus 332 -----------------------------~~---~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~ 379 (564)
++ ..++++|+++.|+.+|+++++.+++.|+++|.||+.+++++..+.+
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~ 534 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ 534 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12 5677899999999999999999999999999999998889999999
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH---HHcCChHHHHHhccCCCc-chHHHHHHHHHHhcCC-hh
Q 008486 380 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA---VRAGVVPTLMHLLTEPGG-GMVDEALAILAILSSH-PE 454 (564)
Q Consensus 380 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i---~~~g~i~~Lv~lL~~~~~-~~~~~al~~L~~L~~~-~~ 454 (564)
.|++++|+.+|.+++..+++.|+++|.||+.+.+....+ ...|++++|+.+|.++.. ..+..|+++|.||+.. ++
T Consensus 535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999999999876554322 124699999999976433 3456899999999987 47
Q ss_pred hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008486 455 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 455 ~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
.+..+++.|+++.|+.+|.++++.+++.|+++|.||+.++ .....+.+ .|+++.|+.++.+++..+++.|+++|.+|.
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999855 45555555 689999999999999999999999999999
Q ss_pred hhHHHHHHHhhc-hhhHHHH
Q 008486 534 RFIEQQKQAQVQ-TESQSQI 552 (564)
Q Consensus 534 ~~~~~~~~~~~~-~~~~~~~ 552 (564)
..++...+.+.+ .+....+
T Consensus 694 ~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHH
Confidence 866666666666 4554433
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=2.6e-27 Score=257.31 Aligned_cols=296 Identities=22% Similarity=0.269 Sum_probs=265.4
Q ss_pred hhhhHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-c
Q 008486 254 AERTKIEILLCKLTSGS-PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-D 331 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~-~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~ 331 (564)
...+.++.|++.|.+++ +..+..|++.|.+++.++++++..+++.|++|.|+.+|.++++.+++.|+++|.||+.+. .
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh
Confidence 34578999999999886 999999999999999988999999999999999999999999999999999999999764 4
Q ss_pred cchhhhccCChHHHHHHH-hcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008486 332 NKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
++..+...|+++.|+.+| .+.++.++..++++|.+|+...+........++++.|+.++.++++.++..|+++|.+|+.
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 588888999999999999 5668999999999999999886555556668999999999999999999999999999998
Q ss_pred ccChhH-HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcC-ChHHHHHHHHHH
Q 008486 411 YQGNKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVL 487 (564)
Q Consensus 411 ~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~k~~A~~~L 487 (564)
..+.+. .+++.|+++.|+.+|.++++.++..|+++|++|+. .+.....+++.|+++.|+.+|.++ ++.++..|+++|
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L 353 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTI 353 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 877654 56789999999999999999999999999999997 456677888899999999999998 899999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-HHHHHHHhhchhhH
Q 008486 488 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQTESQ 549 (564)
Q Consensus 488 ~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~-~~~~~~~~~~~~~~ 549 (564)
.||+.+++.....+++.|+++.|+.++.++++.++..|.++|.++... .......+.+.+..
T Consensus 354 ~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 354 SNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 416 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 999998888889999999999999999999999999999999999977 35555555444333
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=5.5e-27 Score=254.73 Aligned_cols=293 Identities=22% Similarity=0.228 Sum_probs=262.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCCCC-HHHHHHHHHHHHhcccC-Cccc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPD-SRTQEHAVTALLNLSIC-EDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~i~~~A~~~L~nLs~~-~~~~ 333 (564)
..++.|++.|.+++++.|..|+..|++++.... .....+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 558999999999999999999999999976554 67888999999999999999986 99999999999999986 5678
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcc
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~ 411 (564)
..+++.|+++.|+.+|.++++++++.|+++|.+|+... .++..+...|++++|+.+| .+.+..++..++++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88889999999999999999999999999999999774 5788888899999999999 567899999999999999998
Q ss_pred cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008486 412 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
.+........|+++.|+.+|.++++.++..|+++|.+|+..+..+ ..+++.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 665555667899999999999999999999999999999876554 6778889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhHHHHHHHhhchhhH
Q 008486 491 CAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 549 (564)
Q Consensus 491 ~~~~~~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~ 549 (564)
+.+++.....+++.|+++.|+.++.++ ++.+++.|+++|.+|..........+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 999988999999999999999999999 99999999999999997666555555544443
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=3.7e-27 Score=256.14 Aligned_cols=295 Identities=20% Similarity=0.227 Sum_probs=260.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHH-hhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCC-ccc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLA-KRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE-DNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~-~~~ 333 (564)
..++.+++.+.+++++.|..|+..++++. .+.......+++.|+||.|+.+|.. +++.+|..|+++|.|++.+. +++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35889999999999999999999999864 4444456788999999999999975 56899999999999998755 457
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCC-----HHHHHHHHHHHHH
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGT-----QRGKKDAATALFN 407 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~n 407 (564)
..+++.|+++.|+.+|.+++.++++.|+++|.+|+.++ .++..+.+.|++++|+.+|...+ ...+..++++|.|
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999874 68889999999999999998653 4567899999999
Q ss_pred hhcccChhHHH-HHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 008486 408 LCIYQGNKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 408 L~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
++.+......+ ...|+++.|+.+|.+++++++..|+++|.+++..+.. ...+++.|+++.|+.+|.++++.++..|+.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987655433 3468999999999999999999999999999987654 566778899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhHHH
Q 008486 486 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQ 551 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~ 551 (564)
+|.||+.+++.....+++.|+++.|+.++.++++.+++.|+|+|.+|....+.+...+.+.+..+.
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~ 381 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 381 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHH
Confidence 999999999999999999999999999999999999999999999999888887777777666543
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=3e-28 Score=249.51 Aligned_cols=245 Identities=22% Similarity=0.208 Sum_probs=219.7
Q ss_pred hhhhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCCCCHHHHHHHH
Q 008486 253 PAERTKIEILLCKLTS-----------GSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTPDSRTQEHAV 320 (564)
Q Consensus 253 ~~~~~~i~~Lv~~L~s-----------~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~~~~i~~~A~ 320 (564)
..+.|.++.|+..|.+ .+++.|..|++.|.+|+.++..++..+... |+||.|+.+|+++++++++.|+
T Consensus 69 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~ 148 (354)
T 3nmw_A 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148 (354)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHH
Confidence 3466899999999953 246789999999999998888899888654 6699999999999999999999
Q ss_pred HHHHhcccC--CccchhhhccCChHHHHHHH-hcCCHHHHHHHHHHHHhccC-CcchhhHhh-hcCChHHHHHhhccCCH
Q 008486 321 TALLNLSIC--EDNKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSV-IDENKVTIG-ASGAIPPLVTLLSEGTQ 395 (564)
Q Consensus 321 ~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~ 395 (564)
++|.||+.. +++|..|++.|+++.|+++| ++++.++++.|+.+|++|+. .++++..|. ..|+++.|+.+|.++++
T Consensus 149 ~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~ 228 (354)
T 3nmw_A 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 228 (354)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCC
Confidence 999999974 46799999999999999975 56789999999999999998 567888888 67999999999987754
Q ss_pred ----HHHHHHHHHHHHhhc----ccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc-CChhhHHHHHhcCChH
Q 008486 396 ----RGKKDAATALFNLCI----YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKAAIGAAEAVP 466 (564)
Q Consensus 396 ----~~~~~a~~aL~nL~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g~i~ 466 (564)
.+++.|+++|.||+. .++++..+++.|+++.|+.+|.+++..+++.|+++|+||+ .+++++..+++.|+++
T Consensus 229 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~ 308 (354)
T 3nmw_A 229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308 (354)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence 589999999999996 7788888999999999999999999999999999999999 5788999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 008486 467 VLVEVIGNGSPRNRENAAAVLVHLCAGDQQY 497 (564)
Q Consensus 467 ~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~ 497 (564)
.|+++|+++++.+++.|+++|.||+.+++..
T Consensus 309 ~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999887643
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=4.1e-26 Score=248.04 Aligned_cols=281 Identities=18% Similarity=0.165 Sum_probs=257.2
Q ss_pred hhhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-cc
Q 008486 255 ERTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DN 332 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~ 332 (564)
..+.++.|++.|.++ ++.++..|++.|.+++..+++++..++..|++|.|+.+|.++++.+++.|+++|.+++.+. .+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 457899999999987 8999999999999999888889999999999999999999999999999999999999864 56
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
+..+...|+++.|+.+|.+.+.+++..|+++|.+|+... +........++++.|+.++.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999875 5555666679999999999999999999999999999977
Q ss_pred cC-hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008486 412 QG-NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 412 ~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
.+ ....+++.|+++.|+.+|.+++..++..|+++|++++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54 455677889999999999998999999999999999965 5666778888999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
|+.+++.....+++.|+++.|+.++.++++.++..|.++|.+|...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9998888888889999999999999999999999999999999875
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=7.8e-26 Score=245.82 Aligned_cols=293 Identities=21% Similarity=0.219 Sum_probs=260.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCC-ccc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICE-DNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~-~~~ 333 (564)
+.++.|++.|.+++++.|..|+..|+.+... ...++..+++.|++|.|+.+|.++ ++.++..|+++|.+++... +.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4589999999999999999999999998643 345567888999999999999997 8999999999999998854 467
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
..++..|+++.|+.+|+++++++++.|+++|.+|+... .++..+...|+++.|+.++.+.+..++..|+++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 77889999999999999999999999999999999874 67888888999999999999999999999999999999876
Q ss_pred -ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008486 413 -GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 413 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
+........|+++.|+.+|.++++.++..|+++|.+|+.. ++....+++.|+++.|+.+|.+.++.++..|+.+|.+|
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 5555666789999999999998999999999999999976 45677888889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhH
Q 008486 491 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 549 (564)
Q Consensus 491 ~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~ 549 (564)
+.+++.....+++.|+++.|+.++.++++.++..|.++|.+|........+.+.+.+..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 385 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 99998888889999999999999999999999999999999997655555544444333
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=1.9e-25 Score=236.77 Aligned_cols=289 Identities=19% Similarity=0.168 Sum_probs=255.5
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccch
Q 008486 257 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~ 334 (564)
+.++.|++.|.++ ++..|..|++.|.+++..++++...+++.|++|.|+.+|+++++.+++.|+++|.+++.+. ..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999998 8999999999999999888888888899999999999999999999999999999999865 4688
Q ss_pred hhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 335 SIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
.+++.|+++.++.+|++ .+.+++..|+++|.+|+... .........++++.|+.++.++++.++..++++|.+|+...
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 88899999999999996 68999999999999999764 32222223789999999999999999999999999999865
Q ss_pred -ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008486 413 -GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 413 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
+.+..++..|+++.|+.+|.++++.++..|+++|++++... .....+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44556778999999999999889999999999999999765 4456678889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-HHHHHHHhhc
Q 008486 491 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQ 545 (564)
Q Consensus 491 ~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~-~~~~~~~~~~ 545 (564)
+.+++.....+++.|+++.|+.++.++++.++..|.++|.++... .+...+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 998888888899999999999999999999999999999999865 3344443433
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=3.7e-26 Score=222.74 Aligned_cols=238 Identities=27% Similarity=0.301 Sum_probs=222.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhH
Q 008486 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVT 376 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~ 376 (564)
|.+|.|+.+|.+++++++..|+++|.+++.... ++..+++.|+++.++.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 678999999999999999999999999987665 788999999999999999999999999999999999998 678999
Q ss_pred hhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh-cccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hh
Q 008486 377 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLC-IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PE 454 (564)
Q Consensus 377 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~ 454 (564)
+.+.|+++.|+.++.++++.++..|+++|.||+ ..++++..+++.|+++.|+++|.++++.++..|+++|++|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5667788889999999999999999999999999999999975 45
Q ss_pred hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 455 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 455 ~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred hH
Q 008486 535 FI 536 (564)
Q Consensus 535 ~~ 536 (564)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=3.6e-26 Score=222.80 Aligned_cols=238 Identities=30% Similarity=0.358 Sum_probs=221.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC-Cccchh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~-~~~~~~ 335 (564)
+.++.|++.|.+++++.+..|+..|.+++..+++++..+.+.|+++.|+.+|+++++.++..|+++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4689999999999999999999999999998888999999999999999999999999999999999999987 677899
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccC-CcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008486 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
+.+.|+++.++.+|++++++++..|+++|.+|+. .++++..+.+.|+++.|++++.++++.++..++++|+||+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 567888899999999999999999999999999999999986554
Q ss_pred -hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 415 -KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 415 -~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
+..+++.|+++.|+.+|.++++.++..|+++|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.||+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999997 56777888899999999999999999999999999999997
Q ss_pred CC
Q 008486 493 GD 494 (564)
Q Consensus 493 ~~ 494 (564)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.9e-26 Score=225.41 Aligned_cols=236 Identities=25% Similarity=0.357 Sum_probs=217.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CCccchh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~~~~~ 335 (564)
...+.++..|.+++++.|..|+..|+++...+.+++..+.+.|++|.|+.+|+++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 457899999999999999999999977665678889999999999999999999999999999999999997 5677899
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh-hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc-C
Q 008486 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ-G 413 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~ 413 (564)
+++.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+.+.|+++.|+.+|.+++..++..|+++|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 88889999999999999999999999999999999865 4
Q ss_pred hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 414 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
++..+++.|+++.|+.+|.++++.++..|+++|.+|+. .++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 45567889999999999999999999999999999984 56778888999999999999999999999999999999975
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=1.6e-24 Score=229.70 Aligned_cols=282 Identities=21% Similarity=0.213 Sum_probs=254.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCC--cc
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE--DN 332 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~--~~ 332 (564)
.+.++.|++.|.+++++++..|+..|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4789999999999999999999999999999888899999999999999999996 68999999999999999754 33
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
+..++ .++++.|+.+|.+++++++..++++|.+|+... +.+..+...|+++.|+.++.+++..++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 33333 899999999999999999999999999999864 5667777889999999999999999999999999999987
Q ss_pred cChhH-HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008486 412 QGNKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 412 ~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
.+... .+++.|+++.|+.+|.++++.++..|+++|.+++. .++....+++.|+++.|+.+|.++++.+|..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66544 46788999999999999899999999999999996 56777788888999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008486 490 LCAG-DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 490 L~~~-~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
++.+ ++.....+++.|+++.|+.++.+++++++..|.++|.++....+.
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 9976 677888888999999999999999999999999999999986654
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=9.8e-26 Score=220.38 Aligned_cols=236 Identities=24% Similarity=0.350 Sum_probs=219.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhc-ccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhH
Q 008486 299 GAIPLLVGLLSTPDSRTQEHAVTALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVT 376 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~ 376 (564)
...+.++.+|++++++++..|+++|.++ +.+++++..+++.|+++.|+.+|++++++++..|+++|.+|+.. ++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678999999999999999999999775 44666788899999999999999999999999999999999984 678999
Q ss_pred hhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh-HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hh
Q 008486 377 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK-GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PE 454 (564)
Q Consensus 377 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~ 454 (564)
+.+.|+++.|+.+|.++++.++..|+++|.||+...+++ ..+++.|+++.|+.+|.+++..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 7888999999999999999999999999999999975 46
Q ss_pred hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 455 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 455 ~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788889999999999999999999999999999999899999999999999999999999999999999999998864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=4.5e-24 Score=231.22 Aligned_cols=277 Identities=23% Similarity=0.264 Sum_probs=249.3
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccc
Q 008486 256 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNK 333 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~ 333 (564)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+. ..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999865 89999999999999986 5779999999999999999999999999999999999999874 557
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCC-HHHHHHHHHHHHHhhcc
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIY 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 411 (564)
..+.+.|+++.|+.+|++++++++..++.+|.+|+.. ++++..+.+.|+++.|+.++++++ ...+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 7788999999999999999999999999999999975 578889999999999999998775 55667889999999999
Q ss_pred cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008486 412 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
++++..+++.|+++.|+.++.++++.++..++++|.+|+....... ...++++.|+.+|.+.++.+++.|+++|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998899999999999999997654321 12368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHHHHHHHHHhh
Q 008486 492 AGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~ 535 (564)
.+++..+..+.+.|+++.|+.++.+. ++.++..|..+|.+|...
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 99888999999999999999999863 379999999999999864
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.7e-24 Score=234.61 Aligned_cols=291 Identities=21% Similarity=0.171 Sum_probs=253.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCcc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~ 332 (564)
..+.++.|+..|+++++.++..|+..|.+++. +..++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 45789999999999999999999999999996 5567766665 48999999999754 899999999999999998889
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 411 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 411 (564)
+..+.+.|+++.|+.+|++++++++..|+++|.+|+..+ ..+..+.+.|+++.|++++.+++.+++..++.+|.+++..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874 5677788899999999999999999999999999999985
Q ss_pred -cChhHHHHHcCChHHHHHhccCCC-cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008486 412 -QGNKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 412 -~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
++++..+++.|+++.|+.+|.+.+ ......++.+|.+|+.+++++..+++.|+++.|+.++.++++.++..|+++|.+
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567888889999999999997644 456777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhhH
Q 008486 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 549 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~ 549 (564)
|+...+... ...|+++.|+.++.++++.++..|.++|.+|....+..++.+.+.+..
T Consensus 254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence 998654221 123789999999999999999999999999988765555555544433
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=232.85 Aligned_cols=276 Identities=23% Similarity=0.268 Sum_probs=249.0
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccc
Q 008486 256 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNK 333 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~ 333 (564)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|+++.|+.+|+++++.++..|+++|.||+.+. ..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999875 89999999999999997 5679999999999999999999999999999999999998864 557
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccC-CcchhhHhhhcCChHHHHHhhccCC-HHHHHHHHHHHHHhhcc
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIY 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 411 (564)
..+.+.|+++.|+.+|++++++++..++.+|.+|+. +++++..+.+.|+++.|+.++++++ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 778899999999999999999999999999999996 5688999999999999999998774 67788999999999999
Q ss_pred cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008486 412 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
++++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|+.+|.+.++.+++.|+++|.+|+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888999999999999999754321 112368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC-C-HHHHHHHHHHHHHHHh
Q 008486 492 AGDQQYLAEAKELGVMGPLVDLAQNG-T-DRGKRKAAQLLERMSR 534 (564)
Q Consensus 492 ~~~~~~~~~~~~~g~i~~L~~Ll~~~-~-~~~k~~A~~lL~~l~~ 534 (564)
.+++..+..+.+.|+++.|+.++.+. + +.++..|..+|.+|..
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99889999999999999999999874 3 7999999999999975
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=237.82 Aligned_cols=290 Identities=21% Similarity=0.184 Sum_probs=254.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCcc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~ 332 (564)
..+.++.|+..|+++++.++..|+..|.+++... .++..+... |+++.|+++|.++ +++++..|+.+|.+|+.+.++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3578999999999999999999999999999754 567666654 8999999999875 899999999999999998889
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI- 410 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~- 410 (564)
+..+.+.|+++.|+.+|++++++++..|+++|.+|+... ..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999874 567778889999999999999999999999999999996
Q ss_pred ccChhHHHHHcCChHHHHHhccCCC-cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHH
Q 008486 411 YQGNKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 489 (564)
Q Consensus 411 ~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~ 489 (564)
.++++..+++.|+++.|+.+|.+.+ ..++..++.+|.+|+.+++++..+++.|+++.|+.++.++++.+++.|+++|.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6778888999999999999998744 567788999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhh
Q 008486 490 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 490 L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~ 548 (564)
||...+.. ....++++.|+.++.++++.++..|.++|.+|.......++.+.+.+.
T Consensus 251 L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~ 306 (644)
T 2z6h_A 251 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306 (644)
T ss_dssp HGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred Hhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 99865331 112368999999999999999999999999999876555555544443
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=199.77 Aligned_cols=195 Identities=21% Similarity=0.241 Sum_probs=175.6
Q ss_pred hHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CCccc
Q 008486 257 TKIEILLCKLTSGSP--EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNK 333 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~--~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~~~ 333 (564)
..++.||++|.++++ +.|..|+..|++++.+++.+|..+++.|+||.|+.+|+++++++|+.|+++|.||+. ++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 568999999999988 889999999999999999999999999999999999999999999999999999998 46789
Q ss_pred hhhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc---c-------------CCHH
Q 008486 334 GSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---E-------------GTQR 396 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------------~~~~ 396 (564)
..|++.|+|+.|+++|++ ++.+++++|+.+|++||..+.+|..|.+. ++++|+.++. + .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999984 68999999999999999999999999875 6999998763 1 2568
Q ss_pred HHHHHHHHHHHhhcc-cChhHHHHHc-CChHHHHHhccC------CCcchHHHHHHHHHHhcCC
Q 008486 397 GKKDAATALFNLCIY-QGNKGKAVRA-GVVPTLMHLLTE------PGGGMVDEALAILAILSSH 452 (564)
Q Consensus 397 ~~~~a~~aL~nL~~~-~~~~~~i~~~-g~i~~Lv~lL~~------~~~~~~~~al~~L~~L~~~ 452 (564)
++.+|..+|.||+.. +++|..+.+. |+|+.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999985 4889889875 789999999975 2557899999999999864
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=2.8e-22 Score=227.13 Aligned_cols=291 Identities=20% Similarity=0.187 Sum_probs=253.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CCccc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNK 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~~~ 333 (564)
..+.++.|++.|.++++..+..|+..|.+++...+..+..+.+.|+++.|+.+|.+++..++..++.+|.+++. +++++
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 45789999999999999999999999999999888889999999999999999999999999999999999986 46778
Q ss_pred hhhhccCChHHHHHHHhcCC-HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 334 GSIVSSGAVPSIVHVLRIGS-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
..++..|+++.|+.+|++++ ...++.++.+|.+|+....++..+.+.|+++.|+.++.+++..++..++++|.+|+...
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 88999999999999999885 45667889999999998899999999999999999999999999999999999999765
Q ss_pred ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHhc-CC-hHHHHHHHHHHHH
Q 008486 413 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGN-GS-PRNRENAAAVLVH 489 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~-~~~k~~A~~~L~~ 489 (564)
... ....++++.|+.+|.+.+..++..|+++|.+|+..+ +.+..+++.|+++.|+++|.. ++ ..+++.|+.+|.+
T Consensus 392 ~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 392 TKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 432 122478999999999999999999999999998764 678888999999999999986 33 4899999999999
Q ss_pred HhcCCHH---HHHHHHHcCCHHHHHHhhhcCCH-HHHHHHHHHHHHHHhhHHHHHHHhhchhh
Q 008486 490 LCAGDQQ---YLAEAKELGVMGPLVDLAQNGTD-RGKRKAAQLLERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 490 L~~~~~~---~~~~~~~~g~i~~L~~Ll~~~~~-~~k~~A~~lL~~l~~~~~~~~~~~~~~~~ 548 (564)
|+..++. ....+...|+++.|+.++.+++. .+++.|+++|.+|....+.+ ..+.+.+.
T Consensus 470 L~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~ 531 (780)
T 2z6g_A 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA 531 (780)
T ss_dssp TTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTH
T ss_pred HHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCC
Confidence 9976543 34577889999999999998865 99999999999999766554 44444443
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=7.5e-23 Score=231.80 Aligned_cols=289 Identities=21% Similarity=0.178 Sum_probs=252.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCCC-CHHHHHHHHHHHHhcccCCccc
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~-~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
.+.++.|+..|.+.++.+|..|+..|.+++. +..++..+... |+++.|+.+|.++ ++.++..|+.+|.+|+.+.+++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 5789999999999999999999999999997 45567677644 8999999999865 8999999999999999988888
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc-
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY- 411 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~- 411 (564)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+..
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999884 5677777889999999999999999999999999999974
Q ss_pred cChhHHHHHcCChHHHHHhccCCCc-chHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008486 412 QGNKGKAVRAGVVPTLMHLLTEPGG-GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
.+++..+++.|+++.|+.+|.+.+. .....++.+|.+|+..+..+..+++.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 6778888999999999999987554 456688999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhchhh
Q 008486 491 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTES 548 (564)
Q Consensus 491 ~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~ 548 (564)
+...+.. ....++++.|+.++.+.++.++..|+++|.+|.......++.+.+.+.
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~ 442 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTH
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 9766321 112468999999999999999999999999999876555555554443
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=198.06 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=173.1
Q ss_pred CHHHHHHhhCCCCH--HHHHHHHHHHHhccc-CCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhh
Q 008486 300 AIPLLVGLLSTPDS--RTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKV 375 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~--~i~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~ 375 (564)
.+|.|+.+|+++++ .+|..|++.|.+|+. +++++..|++.|+||.|+++|+++++++++.|+++|.+|+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999988 899999999999996 567899999999999999999999999999999999999985 68999
Q ss_pred HhhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC----------------CCcch
Q 008486 376 TIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE----------------PGGGM 438 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~----------------~~~~~ 438 (564)
.|.+.|+||+|+++|. +++..+++.|+.+|+||+..+++|..+++. ++++|++++.. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999998874 69999987631 24589
Q ss_pred HHHHHHHHHHhcC-ChhhHHHHHhc-CChHHHHHHHhcC------ChHHHHHHHHHHHHHhcC
Q 008486 439 VDEALAILAILSS-HPEGKAAIGAA-EAVPVLVEVIGNG------SPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 439 ~~~al~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~~k~~A~~~L~~L~~~ 493 (564)
++.|.++|.||+. ++++|..+.+. |+|+.|+.+++.+ +.+.+|+|+.+|.|||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999987 56999999986 6689999999862 467899999999999874
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=2.7e-22 Score=190.38 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=178.9
Q ss_pred HhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc-CCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchh
Q 008486 297 EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENK 374 (564)
Q Consensus 297 ~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~ 374 (564)
..|..+.|+.+|+++++.++..|+++|.+++. +++++..+++.|+++.|+.+|++++++++..|+++|.+|+.. +.++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45789999999999999999999999999995 556788899999999999999999999999999999999964 5788
Q ss_pred hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-
Q 008486 375 VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH- 452 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~- 452 (564)
..+.+.|+++.|+.+|.++++.++..|+++|.||+...+. +..+++.|+++.|+.+|.+++..++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999976544 45678999999999999999999999999999999987
Q ss_pred hhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 453 PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 453 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
++.+..+.+.|+++.|+.++.++++.+++.|+.+|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7888888999999999999999999999999999999985
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=7e-22 Score=187.49 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=180.9
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-ccChh
Q 008486 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI-YQGNK 415 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~ 415 (564)
..|+.+.|+.+|++++++++..|+++|.+|+.. ++++..+.+.|+++.|+.+|.++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 468899999999999999999999999999954 5788889999999999999999999999999999999995 55677
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008486 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
..+++.|+++.|+.+|.++++.++..|+++|.+|+. .++.+..+++.|+++.|+.+|+++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 788899999999999999999999999999999995 4566678889999999999999999999999999999999988
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 495 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 495 ~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+.....+.+.|+++.|+.++.++++.+++.|.++|.+|.+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999864
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-22 Score=220.07 Aligned_cols=280 Identities=16% Similarity=0.134 Sum_probs=237.4
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-hHHHH
Q 008486 255 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNA-------------------------------------D-NRVAI 295 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s-~~~~~~~~al~~L~~L~~~~~-------------------------------------~-~r~~i 295 (564)
+.+.++.|++.+++ .+......++..|.+++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 45779999999985 667788888888888875221 1 56778
Q ss_pred HHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHH---HHHHHHHHHHhccCCcc
Q 008486 296 AEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSME---ARENAAATLFSLSVIDE 372 (564)
Q Consensus 296 ~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e---~~~~a~~~L~~Ls~~~~ 372 (564)
.+.|+||.|+.+++++++.+|+.|+++|.||+.+.++|..+++.|+++.|+.+|.+++.. .+..|+.+|.+|....+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999998644 89999999999986655
Q ss_pred hhhHhhh---cCChHHHHHhhcc--CCH------------HHHHHHHHHHHHhhcccCh-----hHHHHHc-CChHHHHH
Q 008486 373 NKVTIGA---SGAIPPLVTLLSE--GTQ------------RGKKDAATALFNLCIYQGN-----KGKAVRA-GVVPTLMH 429 (564)
Q Consensus 373 ~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~a~~aL~nL~~~~~~-----~~~i~~~-g~i~~Lv~ 429 (564)
....+.. .|++++|+.+|.. +.. .-+..|+.||.||+..+++ +..++.. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 4443321 3999999999983 211 2277999999999998743 6778885 99999999
Q ss_pred hccCCCcchHHHHHHHHHHhcCChhhH-HHHHhcC------ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008486 430 LLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAE------AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK 502 (564)
Q Consensus 430 lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g------~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~ 502 (564)
+|.+++..++..|++++.||+.+++++ ..+.+.+ .++.|+.+++.++..+|..|+++|.+++..++..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999888999999999999999999875 3554322 378899999999999999999999999888888888888
Q ss_pred Hc-CCHHHHHHhhhc--CCHHHHHHHHHHHHHHHh
Q 008486 503 EL-GVMGPLVDLAQN--GTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 503 ~~-g~i~~L~~Ll~~--~~~~~k~~A~~lL~~l~~ 534 (564)
+. ++++.|+.++++ +++.++..+..++.+|..
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 86 899999999999 899999999999999996
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2e-20 Score=204.34 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=235.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCC-CCHHHHHHHHHHHHhcccCCc--
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLST-PDSRTQEHAVTALLNLSICED-- 331 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~-- 331 (564)
....+.+++.|..++.+.+..|++.|..++. .++.|..+++. |+++.|+.+++. ++..+...++.+|.||+.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3577888888888887789999999999996 67788888766 679999999995 788899999999999986322
Q ss_pred -------------------------------------cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh
Q 008486 332 -------------------------------------NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 332 -------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3456678999999999999999999999999999999999999
Q ss_pred hHhhhcCChHHHHHhhccCCHH---HHHHHHHHHHHhhcccChhHHHHH---cCChHHHHHhccC-CCcc----------
Q 008486 375 VTIGASGAIPPLVTLLSEGTQR---GKKDAATALFNLCIYQGNKGKAVR---AGVVPTLMHLLTE-PGGG---------- 437 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~nL~~~~~~~~~i~~---~g~i~~Lv~lL~~-~~~~---------- 437 (564)
..+.+.|++++|+.++.+++.. ++..|+.+|++|....+....+-. .|+|++|+.+|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999988654 899999999999977665543311 3899999999973 2211
Q ss_pred --h-HHHHHHHHHHhcCCh-----hhHHHHHhc-CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHHc---
Q 008486 438 --M-VDEALAILAILSSHP-----EGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL-AEAKEL--- 504 (564)
Q Consensus 438 --~-~~~al~~L~~L~~~~-----~~~~~i~~~-g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~-~~~~~~--- 504 (564)
+ +..|+.+|.||+..+ +.+..++++ |+++.|.++|.++++.+|..|+.+|.||+.+. ... +.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~ 650 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENP 650 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCc
Confidence 2 678999999999886 347888886 99999999999999999999999999999744 432 233221
Q ss_pred ---CCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 008486 505 ---GVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQ 545 (564)
Q Consensus 505 ---g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 545 (564)
+-++.|+.|+..++.++|+.|.++|.++....+...+.+.+
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 23789999999999999999999999997655544344433
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=3.8e-19 Score=177.33 Aligned_cols=238 Identities=17% Similarity=0.165 Sum_probs=192.3
Q ss_pred hhhhHHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCCHHHHHHHH
Q 008486 254 AERTKIEILLCKLTSG------------SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAV 320 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~------------~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~i~~~A~ 320 (564)
.+...++..+..|.++ +.+.+..|+..|..++. +.++...+...|++|.|+. +|.++++.++..|+
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 3456677778888764 23578889999999996 7778888999999999999 99999999999999
Q ss_pred HHHHhcccCC-ccchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHH
Q 008486 321 TALLNLSICE-DNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRG 397 (564)
Q Consensus 321 ~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 397 (564)
++|+|++.+. ..+..+++.|++++|+.+|+++ +.++++.|+++|.+|+.+. .....+...|+++.|+.+|++++..+
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 9999998865 4688899999999999999975 7899999999999999765 45667888899999999999999999
Q ss_pred HHHHHHHHHHhhcc-cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh-hhHHHHHhc-CChHH----HHH
Q 008486 398 KKDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAA-EAVPV----LVE 470 (564)
Q Consensus 398 ~~~a~~aL~nL~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~-g~i~~----Lv~ 470 (564)
+..|+|+|.||+.. ++.+..+++.|+++.|+.+|.+++..+++.|+.+|.+|+... .....+... ..+.. -.+
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~ 263 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ 263 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999876 456778889999999999999999999999999999998773 222222221 11222 223
Q ss_pred HHhcC--ChHHHHHHHHHHHHHhc
Q 008486 471 VIGNG--SPRNRENAAAVLVHLCA 492 (564)
Q Consensus 471 lL~~~--~~~~k~~A~~~L~~L~~ 492 (564)
-|+.. ..+..+.|..+|-++..
T Consensus 264 ~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 264 LLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HccchHHHHHHHHHHHHHHHHHcC
Confidence 33322 24666777777766553
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.81 E-value=6e-19 Score=175.90 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHH-hhccCCHHHHHHHHHHHHHhhcccC-hhHHHHHcCChHHHHHh
Q 008486 353 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHL 430 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~l 430 (564)
+.+.+..|+..|.+++.+.++...+...|++++|+. +|.++++.++..|+++|+|++.+.+ .+..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999998888888999999999999 9999999999999999999998654 56778899999999999
Q ss_pred ccC-CCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 008486 431 LTE-PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMG 508 (564)
Q Consensus 431 L~~-~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 508 (564)
|.+ ++..++..|+++|.+++.+ +.+...+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++..+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 985 5788999999999999864 56778888999999999999999999999999999999998888999999999999
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhhHHHHHH
Q 008486 509 PLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQ 541 (564)
Q Consensus 509 ~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~ 541 (564)
.|+.++.+++..+++.|..+|.+|....+....
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~ 245 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHH
Confidence 999999999999999999999999887544333
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.80 E-value=1e-19 Score=149.60 Aligned_cols=76 Identities=30% Similarity=0.435 Sum_probs=71.2
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCC-CcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 234 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg-~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 234 (564)
...+|++|.||||+++|+|||+++|| |+|||.||++|+.. +.+||.|+.++....+.||..+++.|+.|+..++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 44689999999999999999999999 99999999999985 789999999999999999999999999999998764
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.79 E-value=8.9e-20 Score=146.23 Aligned_cols=74 Identities=32% Similarity=0.479 Sum_probs=69.2
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Q 008486 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
..+|++|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+.++....+.||..++++|+.|+..++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999999999999984 78999999999999999999999999999988653
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=1.6e-19 Score=163.64 Aligned_cols=75 Identities=35% Similarity=0.543 Sum_probs=70.8
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 234 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 234 (564)
.+|++|.||||+++|.|||+++|||+|||.||.+|+..++.+||.|+.+++...+.||..++.+|+.|+..+|+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 579999999999999999999999999999999999875558999999999999999999999999999999874
No 42
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.78 E-value=1.7e-19 Score=148.92 Aligned_cols=75 Identities=33% Similarity=0.473 Sum_probs=70.2
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
...+|++|.||||+++|.|||+++|||+|||.||.+|+. ++.+||.|+.+++...+.||..+++.|+.|+..++-
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 346899999999999999999999999999999999998 578999999999999999999999999999998764
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.75 E-value=1.2e-18 Score=137.90 Aligned_cols=75 Identities=76% Similarity=1.340 Sum_probs=71.2
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Q 008486 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
..++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|+.++....+.||..++++|+.|..++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999999987789999999999989999999999999999999987
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=4.6e-17 Score=161.81 Aligned_cols=76 Identities=34% Similarity=0.527 Sum_probs=71.5
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC
Q 008486 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 234 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 234 (564)
..+|++|.||||+++|.|||+++||||||+.||.+|+..++.+||.|+.+++...+.||..++..|+.|+..+++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999999999999999987777999999999999999999999999999998874
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=132.81 Aligned_cols=74 Identities=28% Similarity=0.481 Sum_probs=65.2
Q ss_pred CCCCCccCcccccCCCCCEEcC-CCCcccHHHHHHHHHhC-----CCCCCC--CCCC-CcCCCCCchHHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAG-----HRTCPK--TQQT-LTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
..+++|.||||+++|.|||+++ |||+||+.||.+|+..+ ..+||. |+.. +....+.||..++.+|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578899999999999999996 99999999999999853 468999 6555 8888999999999999999887
Q ss_pred cCC
Q 008486 231 NGI 233 (564)
Q Consensus 231 ~~~ 233 (564)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 653
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=120.41 Aligned_cols=75 Identities=29% Similarity=0.572 Sum_probs=67.7
Q ss_pred CCCCCCccCcccccCCCCCEEcC-CCCcccHHHHHHHHHh-CCCCCCCCCCCC-cCCCCCchHHHHHHHHHHHHHcCC
Q 008486 159 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEA-GHRTCPKTQQTL-TSTAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
..++++|.||||+++|.+||+++ |||+||+.||..|+.. +...||.|+.++ ....+.+|..++++++.|...++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 36788999999999999999999 9999999999999975 457999999997 566899999999999999998765
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=2.2e-13 Score=145.30 Aligned_cols=287 Identities=18% Similarity=0.179 Sum_probs=230.1
Q ss_pred hhhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhccc-CC
Q 008486 255 ERTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSI-CE 330 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~-~~ 330 (564)
..++|+.|+..+.+. -.+.++.|+..|+.+++. ++.. +..++++.|+..|+.+ |.++...++.+|.++.. ++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 458999999999874 478999999999999864 3333 3466899999999874 88899999999988744 22
Q ss_pred cc-----------------chhh-hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--hhhHhhhc-CChHHHHHh
Q 008486 331 DN-----------------KGSI-VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGAS-GAIPPLVTL 389 (564)
Q Consensus 331 ~~-----------------~~~i-~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~-g~i~~Lv~l 389 (564)
.. .+.+ .+.+.++.|+.+|++.+..+|.+++.+|..|+.... ++..|... ++++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 11 1122 257899999999999999999999999999997753 67777755 999999999
Q ss_pred hccCCHHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCC----cchHHHHHHHHHHhcCC-hhhHHHHHhcC
Q 008486 390 LSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPG----GGMVDEALAILAILSSH-PEGKAAIGAAE 463 (564)
Q Consensus 390 L~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~~~~i~~~g 463 (564)
|++..+.++..++..|.+|+.++.+..+++. .|+++.|+.++.... ..++..|+.+|.||..+ +.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999999998888775 599999999997633 36889999999999865 46888899999
Q ss_pred ChHHHHHHHhcCCh-------H--HHHHHHHHHHHHhcC------CHHHHHHHHHcCCHHHHHHhhhcC--CHHHHHHHH
Q 008486 464 AVPVLVEVIGNGSP-------R--NRENAAAVLVHLCAG------DQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAA 526 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~-------~--~k~~A~~~L~~L~~~------~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k~~A~ 526 (564)
+++.|..+|..+.. + ....+..++.-|+.. +..+...+.+.|+++.|++++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975432 1 122355666666665 335678889999999999998865 677888999
Q ss_pred HHHHHHHhhHHHHHHHhhc
Q 008486 527 QLLERMSRFIEQQKQAQVQ 545 (564)
Q Consensus 527 ~lL~~l~~~~~~~~~~~~~ 545 (564)
.++..+.+..+..+..++.
T Consensus 335 ~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHhh
Confidence 9998888877777766654
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.52 E-value=2e-12 Score=138.06 Aligned_cols=293 Identities=14% Similarity=0.079 Sum_probs=225.9
Q ss_pred hhhhhHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChh-----------------hH-HHHHHhCCHHHHHHhhCCCC
Q 008486 253 PAERTKIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNAD-----------------NR-VAIAEAGAIPLLVGLLSTPD 312 (564)
Q Consensus 253 ~~~~~~i~~Lv~~L~s--~~~~~~~~al~~L~~L~~~~~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~ 312 (564)
.....+++.|+..|+. .|.+....++..|.++...+.+ +. ..+.+.+.|+.|+.+|++.+
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d 135 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence 3446779999999986 4778888899999887643322 11 22345688999999999999
Q ss_pred HHHHHHHHHHHHhcccCCc--cchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh-hcCChHHHHH
Q 008486 313 SRTQEHAVTALLNLSICED--NKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG-ASGAIPPLVT 388 (564)
Q Consensus 313 ~~i~~~A~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~ 388 (564)
..++..++..|..|+.... .++.|. ..++++.|+.+|++....+|..++.+|.+|+..+....++. -.|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 9999999999999986543 577888 56999999999999999999999999999999876555554 4599999999
Q ss_pred hhccCC----HHHHHHHHHHHHHhhcccC-hhHHHHHcCChHHHHHhccCCCcc------hHHH---HHHHHHHhcCC--
Q 008486 389 LLSEGT----QRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLLTEPGGG------MVDE---ALAILAILSSH-- 452 (564)
Q Consensus 389 lL~~~~----~~~~~~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~------~~~~---al~~L~~L~~~-- 452 (564)
++..+. ..+..+++.+|.||..++. |...+.+.|+++.|..+|..+... .... ++.++..|...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998753 3678899999999998765 777788999999999999753321 2233 56666666543
Q ss_pred -----hhhHHHHHhcCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CHHHHHHhhhc
Q 008486 453 -----PEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELG---------VMGPLVDLAQN 516 (564)
Q Consensus 453 -----~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~Ll~~ 516 (564)
..++..+.+.|++..|++++... ...++..|..++..++++++.....+.+.. ++..|+.++.+
T Consensus 296 ~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 24577889999999999999865 477899999999999999998888877643 34444444544
Q ss_pred C-CHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 008486 517 G-TDRGKRKAAQLLERMSRFIEQQKQAQVQ 545 (564)
Q Consensus 517 ~-~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 545 (564)
. ...+|-.|..+++......+..+..+..
T Consensus 376 ~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCFLYKNQKGQGEIVS 405 (651)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3 5778888888988887666554444443
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.9e-13 Score=129.33 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=64.4
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHh-CCCCCCC--CCCCCcCCCCCchHHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEA-GHRTCPK--TQQTLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
....+|.||||+++|+|||+. .|||+|||.||.+||.. +..+||+ |++.+...++.||..++.+++.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457789999999999999985 99999999999999985 4568999 99999999999999999999999774
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=122.81 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=64.0
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC-CCCCchHHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS-TAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~~ 230 (564)
.+++++.||||++.|.+||+++|||+||+.||..|+..+...||.|+.++.. ..+.+|..++.+++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3467899999999999999999999999999999999667799999999987 7899999999999988543
No 51
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.45 E-value=1.2e-13 Score=152.60 Aligned_cols=153 Identities=24% Similarity=0.282 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhHhhhcCCC
Q 008486 52 VELYEELLSLYNKNNDVTPDPAVLRGLAEKLQLMGIADLTQESLALHEMVASTGGDPGETIEKMSMLLKKIKDFVQTENP 131 (564)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 131 (564)
.++..+|..+|-+ .. +.+.+-.+..+-|.++..++..+...+-. .+.+-...+.++++..+..++.+.....+.
T Consensus 807 k~lL~~i~~IYln-L~---~~~~F~~aVa~DgRSy~~elF~~a~~il~--~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~ 880 (968)
T 3m62_A 807 KDLLKALTTVYIN-LS---EQSEFISAVAKDERSFNRNLFVRAVDILG--RKTGLASPEFIEKLLNFANKAEEQRKADEE 880 (968)
T ss_dssp HHHHHHHHHHHHH-TT---TCHHHHHHHHHCTTTCCHHHHHHHHHHHT--TSTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cc---CChHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666665543 11 12446666666777666666666654321 011112355677777777777544322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCccCcccccCCCCCEEcCCC-CcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 132 NLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpic~~lm~dPv~~~cg-~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.+....++|++|.|||+.++|+|||++++| +||+|.+|++|+.. +.+||.|+++++
T Consensus 881 ----------------------~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 881 ----------------------EDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp ----------------------HHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred ----------------------hhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 011123689999999999999999999997 79999999999985 779999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHcCC
Q 008486 211 STAVTPNYVLRSLIAQWCEANGI 233 (564)
Q Consensus 211 ~~~l~~n~~l~~~i~~~~~~~~~ 233 (564)
...++||+.+|..|++||..++.
T Consensus 938 ~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 938 LEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp GGGCEECHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 52
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.42 E-value=3.5e-14 Score=105.37 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=49.2
Q ss_pred CccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchH
Q 008486 164 DFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNY 218 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~ 218 (564)
.|.||||+++|.|||+. +|||+|||.||++|+.. +.+||+|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999985 45699999999999998875
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=9.4e-14 Score=123.62 Aligned_cols=70 Identities=21% Similarity=0.454 Sum_probs=64.0
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC-CCCchHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST-AVTPNYVLRSLIAQWCE 229 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~~ 229 (564)
.+++++.||||.++|.+||+++|||+||+.||..|+..+...||.|+.++... .+.+|..++.++..|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999997777999999999977 89999999999998853
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.40 E-value=6.7e-12 Score=124.09 Aligned_cols=229 Identities=15% Similarity=0.117 Sum_probs=178.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
+...++.|+..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+++|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 34568999999999999999999999998752 2467999999999999999999999999864322111
Q ss_pred hhhccCChHHHH-HHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008486 335 SIVSSGAVPSIV-HVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 335 ~i~~~g~i~~Lv-~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
..++.+. .+++++++.++..++++|..+...... ....+++.|+.++.++++.++..|+.+|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 1223333 235667899999999999998632210 122467899999999999999999999998753
Q ss_pred hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 008486 414 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
.++++.|+.+|.++++.++..|+.+|+.+.... ..+++.|+.+|.+.++.+|..|+.+|..+..
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-
Confidence 358999999999999999999999999885322 1357889999998899999999999988862
Q ss_pred CHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 494 DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 494 ~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
..+++.|..++.+++ ++..|..+|..+..
T Consensus 222 ----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred ----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 357888888887755 77788888877754
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=1.3e-11 Score=116.56 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=160.9
Q ss_pred hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHh
Q 008486 298 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 377 (564)
Q Consensus 298 ~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 377 (564)
.+.++.|+.+|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 3578999999999999999999999987642 467899999999999999999999998875
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHH
Q 008486 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
..++++.|+.+|.++++.++..|+.+|.++.. .+.++.|+.+|.++++.++..|+.+|+.+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24578999999999999999999999998853 3578999999999999999999999998853
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHH
Q 008486 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 537 (564)
...++.|..+|.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999999853 2367889999999999999999999999887654
Q ss_pred H
Q 008486 538 Q 538 (564)
Q Consensus 538 ~ 538 (564)
.
T Consensus 207 ~ 207 (211)
T 3ltm_A 207 H 207 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=1.7e-11 Score=115.79 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=161.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
+...++.|++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35789999999999999999999999987643 357899999999999999999999998874
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
..++++.|+..|+++++.++..|+.+|..+.. ...++.|+.++.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 24678999999999999999999999998852 3578999999999999999999999998843
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008486 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
...++.|..+|.++++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|.++....
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578999999998999999999999998854 236788999999999999999999999887655
Q ss_pred H
Q 008486 495 Q 495 (564)
Q Consensus 495 ~ 495 (564)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 57
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.7e-13 Score=110.65 Aligned_cols=71 Identities=28% Similarity=0.472 Sum_probs=64.5
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHc
Q 008486 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 231 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 231 (564)
.+++++.||||.+.+.+||++ +|||+||+.||.+|+. ...+||.|+..+....+.+|..++++++.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 346689999999999999998 8999999999999998 4678999999999888999999999999998764
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=3.7e-11 Score=112.49 Aligned_cols=186 Identities=21% Similarity=0.206 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
..+..+.+++.|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 45789999999999999999999999987653 257899999999999999999999998874
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
...+++.|+..|.+.++.++..|+.+|..+.. ..+++.|+.++.++++.++..|+++|.++..
T Consensus 74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 23578999999999999999999999998742 3578999999999999999999999998853
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008486 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
.+.++.|..++.++++.++..|+.+|+.+.. ..+++.|..++.++++.+|..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999998843 236888999999999999999999988763
No 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=4.5e-13 Score=110.85 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=63.4
Q ss_pred CCCCCccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 230 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 230 (564)
.+.+++.||||++.+.+||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+..+++....-
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 45678999999999999999 899999999999999997667999999999988999998888887776554
No 60
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=3.9e-13 Score=107.77 Aligned_cols=65 Identities=29% Similarity=0.615 Sum_probs=56.7
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh-----CCCCCCCCCCCCcCCCCCchHHHHH
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-----GHRTCPKTQQTLTSTAVTPNYVLRS 222 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~ 222 (564)
...+.+++.||||++.+.+|++++|||+||+.||..|+.. +...||.|+..+....+.+|..+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3457789999999999999999999999999999999986 3678999999999888888765543
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.34 E-value=5e-11 Score=111.57 Aligned_cols=185 Identities=21% Similarity=0.204 Sum_probs=159.9
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh
Q 008486 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 378 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 378 (564)
+..+.++.+|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 467899999999999999999999987642 367899999999999999999999998874
Q ss_pred hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHH
Q 008486 379 ASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAA 458 (564)
Q Consensus 379 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~ 458 (564)
...+++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+|.++++.++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23578999999999999999999999998753 3578899999999999999999999998853
Q ss_pred HHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 459 IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 459 i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
...++.|..++.+.++.+|..|+.+|..+.. ..+++.|..++.++++.++..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999842 1367888899999999999999999987653
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.33 E-value=2.7e-13 Score=115.41 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=61.2
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC-------CCCCchHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS-------TAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~i~~~~ 228 (564)
...++|.||||++++.+||+++|||+||+.||.+|+..+...||.|+..+.. ..+.+|..+...+..|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4567899999999999999999999999999999998778899999999863 56778889988888875
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=98.90 Aligned_cols=56 Identities=18% Similarity=0.463 Sum_probs=49.9
Q ss_pred CCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 008486 159 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 214 (564)
..+++++.||||++.+.+||.++|||+||+.||.+|+..+...||.|+.++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 35678999999999999999999999999999999997677899999999876543
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=107.20 Aligned_cols=65 Identities=22% Similarity=0.578 Sum_probs=56.7
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh-----CCCCCCCCCCCCcCCCCCchHHHHH
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-----GHRTCPKTQQTLTSTAVTPNYVLRS 222 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~ 222 (564)
...+.+++.||||.+.+.+|+.++|||+||+.||..|+.. +...||.|+..+....+.+|..+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 3457789999999999999999999999999999999985 4678999999999888888765543
No 65
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.31 E-value=1.1e-12 Score=112.10 Aligned_cols=70 Identities=21% Similarity=0.517 Sum_probs=63.1
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHH
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQW 227 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 227 (564)
...+++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.+..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999987666999999999988888999888887764
No 66
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=99.32 Aligned_cols=57 Identities=25% Similarity=0.631 Sum_probs=49.7
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH--hCCCCCCCCCCCCcCCCC
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE--AGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~--~~~~~CP~~~~~l~~~~l 214 (564)
...+.+++.||||++.+.+|++++|||+||+.||.+|+. .+...||.|+.++....+
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 346788999999999999999999999999999999997 356789999999875543
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=99.29 Aligned_cols=52 Identities=33% Similarity=0.654 Sum_probs=46.6
Q ss_pred CCCCCCccCcccccCCCCCEEcC-CCCcccHHHHHHHHHhC-CCCCCCCCCCCc
Q 008486 159 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAG-HRTCPKTQQTLT 210 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~~-cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~ 210 (564)
..+++++.||||++.|.+||+++ |||+||+.||.+|+... ...||.|+.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 35788999999999999999999 99999999999999853 478999999855
No 68
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=1.1e-12 Score=110.24 Aligned_cols=68 Identities=15% Similarity=0.401 Sum_probs=60.1
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC----CCCchHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTST----AVTPNYVLRSLIAQWC 228 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~~~~ 228 (564)
.+++++.||||++.+.+||++ +|||+||+.||..|+.. ...||.|+..+... .+.+|..+..++..|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456789999999999999997 99999999999999984 58899999998865 6788999988887763
No 69
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-13 Score=109.15 Aligned_cols=63 Identities=24% Similarity=0.523 Sum_probs=55.0
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhC------CCCCCCCCCCCcCCCCCchHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG------HRTCPKTQQTLTSTAVTPNYVLRS 222 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~ 222 (564)
.+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+..+....+.+|..+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 567899999999999999999999999999999999852 678999999998877777765543
No 70
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=103.30 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=52.3
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRS 222 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~ 222 (564)
.....+.||||++.+.+||+++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 45678999999999999999999999999999999984 778999999996 56677755443
No 71
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.3e-12 Score=97.65 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=51.2
Q ss_pred CCCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 159 PVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
..+.+++.||||++.+.+||++ +|||+||+.||.+|+.. ...||.|+..+...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3567899999999999999997 99999999999999985 6789999999987766554
No 72
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.5e-12 Score=93.75 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=43.1
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh--CCCCCCCC
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKT 205 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~ 205 (564)
...+.+++.||||++.+.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457889999999999999999999999999999999985 46789987
No 73
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.27 E-value=2.2e-10 Score=113.06 Aligned_cols=201 Identities=12% Similarity=0.063 Sum_probs=160.4
Q ss_pred HHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh
Q 008486 295 IAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 374 (564)
Q Consensus 295 i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 374 (564)
+...+.++.|+..|.++++.++..|+++|.++. ..++++.++.+|.++++.++..|+++|..+.......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999886 2356899999999999999999999999987433211
Q ss_pred hHhhhcCChHHHHH-hhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCCh
Q 008486 375 VTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 453 (564)
Q Consensus 375 ~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 453 (564)
. ..++.|.+ ++.++++.++..++++|.++....... ...+++.|+.+|.++++.++..|+.+|+++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 1 12333432 346778999999999999987433211 12467889999999999999999999997754
Q ss_pred hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008486 454 EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 454 ~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
.+.++.|+.+|.+.++.+|..|+.+|..+...++ .+++.|..++.++++.++..|.+.|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2589999999999999999999999999865443 35678889999999999999999998876
No 74
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=1.7e-12 Score=118.00 Aligned_cols=70 Identities=21% Similarity=0.540 Sum_probs=62.2
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCc-CCCCCchHHHHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT-STAVTPNYVLRSLIAQWCE 229 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~-~~~l~~n~~l~~~i~~~~~ 229 (564)
.+.+++.||||++.+.+||++ +|||+||+.||.+|+..++..||.|+.++. ...+.+|..+..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999987 999999999999999977889999999985 4568899999999998854
No 75
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.25 E-value=5.7e-11 Score=136.07 Aligned_cols=280 Identities=13% Similarity=0.096 Sum_probs=195.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH----HhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA----EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~ 332 (564)
+.++.|++.+.++++..+..++..|..++...+.....-. -.+++|.|+.+++++++.+|..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 5789999999999999999999999999875443211000 124678888899999999999999999988654321
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
...-.-.+.++.++.++.+++++++..|+.+|..|+......-.-.-.+.++.++.++.+.++.++..|+..+..++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11111135678888888888999999999999999865321111011246777788888888888888888877776422
Q ss_pred ChhH-------------------------------------------------------HHH---H----cCChHHHHHh
Q 008486 413 GNKG-------------------------------------------------------KAV---R----AGVVPTLMHL 430 (564)
Q Consensus 413 ~~~~-------------------------------------------------------~i~---~----~g~i~~Lv~l 430 (564)
..+. .+. . ..+++.+.++
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1100 000 0 1234445555
Q ss_pred ccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 008486 431 LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPL 510 (564)
Q Consensus 431 L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 510 (564)
+.+++..+++.|+.+|+.++........-.-.++++.++..|.+.++.+|..|+++|.+++...+.......-.++++.|
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 66677788888888888888765422111123578889999999999999999999999886432211111122477888
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 511 VDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 511 ~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
+..+.+++++++..|.++|.++.+..
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999988643
No 76
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=1.7e-12 Score=110.66 Aligned_cols=69 Identities=16% Similarity=0.347 Sum_probs=62.7
Q ss_pred CCCCCccCcccccCCCCCEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHHHHc
Q 008486 160 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 231 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 231 (564)
.+.+++.||||++++.+||++ +|||+||+.||..|+. ..||.|+.++....+.+|..++.++..|....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 346789999999999999999 9999999999999986 68999999998889999999999999887653
No 77
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=3.7e-12 Score=111.98 Aligned_cols=64 Identities=22% Similarity=0.530 Sum_probs=51.8
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHHHH
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 228 (564)
.+++.||||++.|.+||+++|||+||+.||.+|+. .+.+||.|+.++... .+|..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 35689999999999999999999999999999998 467899999998643 23455555555543
No 78
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=7.1e-12 Score=106.06 Aligned_cols=67 Identities=24% Similarity=0.506 Sum_probs=56.7
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhC--CCCCCCCCCCCcCCCCCchHHHHHHHHHHH
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG--HRTCPKTQQTLTSTAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 228 (564)
.+.+.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+..+++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 4578999999999999999999999999999999843 368999999999888888766655555544
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=3.4e-12 Score=112.14 Aligned_cols=69 Identities=16% Similarity=0.398 Sum_probs=57.4
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc---------CCCCCchHHHHHHHHH
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT---------STAVTPNYVLRSLIAQ 226 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~---------~~~l~~n~~l~~~i~~ 226 (564)
...++++|.||||+++|.+||.++|||+||+.||.+|+..+...||.|+.++. ...+.++..+++.|..
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 34678899999999999999999999999999999999877779999998753 2245577777776653
No 80
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=93.14 Aligned_cols=55 Identities=24% Similarity=0.507 Sum_probs=48.7
Q ss_pred CCccCccccc-CCCCC----EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 163 DDFRCPISLE-LMKDP----VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 163 ~~f~Cpic~~-lm~dP----v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5689999999999999998777889999999987777654
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.16 E-value=8.6e-12 Score=106.23 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=56.1
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCC-chHHHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT-PNYVLRSLIAQ 226 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~ 226 (564)
.+++++.||||.+.+.+||+++|||+||+.||.+|+..+..+||.|+.++....+. ++..+..++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 45678999999999999999999999999999999997678899999999876654 45555555543
No 82
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=112.13 Aligned_cols=69 Identities=22% Similarity=0.528 Sum_probs=62.2
Q ss_pred CCCCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCchHHHHHHHHH
Q 008486 158 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 226 (564)
Q Consensus 158 ~~~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 226 (564)
...++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+.+.+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 346789999999999999999999999999999999998766799999999998888899888877765
No 83
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.1e-11 Score=86.70 Aligned_cols=46 Identities=30% Similarity=0.791 Sum_probs=41.6
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHh--CCCCCCCC
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKT 205 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~ 205 (564)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56788999999999999999999999999999999764 56789987
No 84
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.09 E-value=2.3e-11 Score=93.73 Aligned_cols=57 Identities=19% Similarity=0.456 Sum_probs=50.1
Q ss_pred CCCCCccCcccccCCCCC-------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 160 VIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
...+++.||||++.+.+| +.++|||+||+.||.+|+.. ..+||.|+.++....+.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 345789999999999998 88999999999999999985 5789999999987777664
No 85
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=93.31 Aligned_cols=54 Identities=28% Similarity=0.584 Sum_probs=47.8
Q ss_pred CCCCCCccCcccccCCCC----CEEcCCCCcccHHHHHHHHHhC--CCCCCCCCCCCcCC
Q 008486 159 PVIPDDFRCPISLELMKD----PVIVSTGQTYERSCIEKWLEAG--HRTCPKTQQTLTST 212 (564)
Q Consensus 159 ~~~p~~f~Cpic~~lm~d----Pv~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~~l~~~ 212 (564)
..+.+.+.||||++.+.+ |+.++|||+||+.||.+|+... ...||.|+..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356788999999999999 9999999999999999999864 57899999987654
No 86
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.08 E-value=2.1e-09 Score=117.00 Aligned_cols=227 Identities=15% Similarity=0.175 Sum_probs=165.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..++.+...+.+.++.++..|+..|..++...... .....++|.|..++.+++..+|..|+.+|..++..... ..
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--ED 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HH
Confidence 45666777778889999999999999998643321 22356889999999999999999999999998753221 11
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh-
Q 008486 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK- 415 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~- 415 (564)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++.+.++.++..|+.+|..++..-...
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2344678888888888999999999999998753211 1123457899999999999999999999999998654322
Q ss_pred -HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 416 -GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 416 -~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.......+++.+..++.++++.++..++.+|..++..-.. ... ....++.+..++.+.++.+|..|+.+|..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 2233456778888888888888888888888877642211 111 12367777777777777777777766666554
No 87
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.07 E-value=3.8e-10 Score=129.21 Aligned_cols=273 Identities=14% Similarity=0.072 Sum_probs=192.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..++.++..+.+++++++..|+..|..++...+..-.... .++++.++.++++.++.++..|+..+..++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 5678888888889999999999999999976654322111 247888899999999999999999999998654333322
Q ss_pred h--ccCChHHHHHHH-----------hc-----------CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc
Q 008486 337 V--SSGAVPSIVHVL-----------RI-----------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE 392 (564)
Q Consensus 337 ~--~~g~i~~Lv~lL-----------~~-----------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 392 (564)
. -...++.++..+ .. .+..++..|+.+|..|+.... ..+ -...++.+..++.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~-~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DEL-LPHILPLLKELLFH 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGG-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHH-HHHHHHHHHHHhcC
Confidence 1 123455555555 12 123468888889888875432 111 12467778888888
Q ss_pred CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHH
Q 008486 393 GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEV 471 (564)
Q Consensus 393 ~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~l 471 (564)
.+..++..|+.+|++++........-.-.++++.++..+.++++.++..|+++|++++..-.. .....-.++++.|+..
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 899999999999999997654322222356889999999999999999999999998853211 0001112467888888
Q ss_pred HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 472 IGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 472 L~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
|.+.++.++..|+.+|.++|...+....... .++++.|..++.....+....+..++..+..
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 8888999999999999999864332211111 3577888888887776666666666666653
No 88
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7e-11 Score=91.00 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=45.1
Q ss_pred CCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
..+++.||||++.+.+||.++|||+||+.||.+|+.. ..+||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 4567999999999999999999999999999999984 5789999998763
No 89
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.07 E-value=7.7e-10 Score=116.70 Aligned_cols=274 Identities=15% Similarity=0.139 Sum_probs=191.2
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCc
Q 008486 257 TKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 257 ~~i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~ 331 (564)
+.++.|++.+.++ ++..+..|+..|..++... +..-.... ..+++.++.+|.++ +..+|..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 8999999999999998753 21111111 23678889999887 78999999999998753211
Q ss_pred -c-chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch--hhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 332 -N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN--KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 332 -~-~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
+ .......-.++.+...+.+++.+++..++.+|..++..... ...+ ..+.++.++..+.+.++.++..|+..+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1 00111111355566666777899999999999998754321 1111 11667778888888899999999999988
Q ss_pred hhcccCh------------------hHHHHH---cCChHHHHHhccC-------CCcchHHHHHHHHHHhcCChhhHHHH
Q 008486 408 LCIYQGN------------------KGKAVR---AGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAI 459 (564)
Q Consensus 408 L~~~~~~------------------~~~i~~---~g~i~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i 459 (564)
++..... ...+++ ..+++.++..|.. .+..++..|..+|..++..-.. .+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH
Confidence 8764310 001111 3466777777743 2346888899999988754321 22
Q ss_pred HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 460 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
. ..+++.+...|.+.+...|+.|+.+|..++.+.. ...... -..+++.|..++.++++.+|..|+++|..+....
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2356777788888889999999999999987543 111111 1468999999999999999999999999998754
No 90
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=88.04 Aligned_cols=51 Identities=20% Similarity=0.491 Sum_probs=45.7
Q ss_pred CCCCCccCcccccCCCCC-------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 160 VIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.+++.+.||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 467889999999999988 88999999999999999985 6789999998763
No 91
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.02 E-value=5.1e-09 Score=113.97 Aligned_cols=266 Identities=15% Similarity=0.092 Sum_probs=194.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..++.|...+.+.++.++..|+..|..++...+.. .....++|.+..+..+++...|..|+.++..++..-.. .
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~- 160 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A- 160 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-
Confidence 45666666667788999999999999998755432 12334577788888888899999999999888654321 1
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhH
Q 008486 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 416 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 416 (564)
.....++.+..+++++++++|..|+.+|..++..-... ......+|.|..++.+++..++..|+.+|..++...+..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-
Confidence 23445778888888889999999999999997543221 223467888999999999999999999999988654332
Q ss_pred HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 008486 417 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 417 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~ 496 (564)
.....+++.+..++.+++..++..|+.+|+.++...... ......++.++.++.+.++.+|..|+.+|..++..-+.
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 233457888888888888899999999999887532111 12335789999999998999999999999998864321
Q ss_pred H-HHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 497 Y-LAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 497 ~-~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
. ........+++.+..++.+.++.+|..+.++|..+..
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 1111223466777777777777777777777666654
No 92
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=3.1e-10 Score=88.56 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=46.4
Q ss_pred CCCCCccCcccccCC--CCCEEcC--CCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 008486 160 VIPDDFRCPISLELM--KDPVIVS--TGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm--~dPv~~~--cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 214 (564)
.+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467889999999988 4666665 999999999999997778899999999875543
No 93
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=9.9e-11 Score=88.10 Aligned_cols=54 Identities=20% Similarity=0.487 Sum_probs=47.5
Q ss_pred CCccCcccccCCCCC-------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 163 DDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 163 ~~f~Cpic~~lm~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468999999999887 78899999999999999985 7789999999987766553
No 94
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.97 E-value=4.9e-10 Score=87.96 Aligned_cols=57 Identities=26% Similarity=0.557 Sum_probs=47.6
Q ss_pred CCCCCccCcccccCCCCC---EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 160 VIPDDFRCPISLELMKDP---VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dP---v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
...+++.||||++.+.+| +.++|||+||+.||.+|+. .+.+||.|+..+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCCC
Confidence 346789999999999866 3469999999999999997 45789999999987666554
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.95 E-value=4.9e-08 Score=106.94 Aligned_cols=266 Identities=17% Similarity=0.130 Sum_probs=185.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc-h
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK-G 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~-~ 334 (564)
...++.+.+.+.+.++.++..|+.++..+...+++. +.+.++++.|..+|.++++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 356677888999999999999999999998866652 233578899999999999999999999999998765422 1
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcc---
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY--- 411 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--- 411 (564)
.-...+.+..++..+...++-.+...+.+|..+...++.. ....++.+..++++.++.++..|++++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1112345777788887788888888888888887443211 124577888888888899999999999998742
Q ss_pred cChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC-hh------------------hHHH-------HHhcC--
Q 008486 412 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PE------------------GKAA-------IGAAE-- 463 (564)
Q Consensus 412 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~------------------~~~~-------i~~~g-- 463 (564)
++.....+-..+.+.|+.++. ++++++..|+..|..++.. ++ .|.. +.+..
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 122222233355677776554 6778888888888766531 10 1111 11222
Q ss_pred --ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 464 --AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 464 --~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+++.|.+++.+.+...|..++..|..++...+.... ..++.|+.++.+....++..+...++.+..
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 345566677777899999999999999987654332 245677777777777777666666665543
No 96
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.90 E-value=9.5e-09 Score=112.61 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=191.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
.....+++.+.+++...++-+...+..+++.+++.. .-++..|.+-|.++++.+|..|+.+|+++.. ++
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~----- 117 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK----- 117 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-----
Confidence 345677888889999999888888888887655532 2356788889999999999999999999862 11
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChh-
Q 008486 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK- 415 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~- 415 (564)
+....++.+...|.+.++.+|..|+.++..+....+. .+...+.++.|..+|.+.++.++..|+.+|..++......
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 1233467899999999999999999999999764321 2223478899999999999999999999999998765422
Q ss_pred HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC--
Q 008486 416 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-- 493 (564)
Q Consensus 416 ~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~-- 493 (564)
..-...+.+..|+..+.+.++..+...+.+|..++..++.. ....++.+..+|++.++.++..|+.++..+...
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 11112244667777777778888888888888887543211 123567777778888899999999999998642
Q ss_pred -CHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 494 -DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 494 -~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
+++....+. ..+.+.|+.++. +++.+|..|...|..+...
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 333333322 346677777664 7788999998888887754
No 97
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.85 E-value=1.4e-08 Score=113.11 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=151.8
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHH-HhhccCCHHHHHHHHHHHHHhhccc--ChhHH
Q 008486 341 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLV-TLLSEGTQRGKKDAATALFNLCIYQ--GNKGK 417 (564)
Q Consensus 341 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~~ 417 (564)
.+.++++.|++++++.|..|+++|.+|+.+...+..+...+++..++ .+|.+.+..++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 46677888999999999999999999999888899888888888765 5678889999999999999999764 45667
Q ss_pred HHHcCChHHHHHhccCCC---------------------cchHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHHhcC
Q 008486 418 AVRAGVVPTLMHLLTEPG---------------------GGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNG 475 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~~~---------------------~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~ 475 (564)
++..|++++|..+|.... ..+.+.++.+|++||.. ++....+...++++.|+.+|.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 889999999998875310 12445678899999864 45566778888999999988542
Q ss_pred ---ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008486 476 ---SPRNRENAAAVLVHLCAGDQQYLAEAKELGVM---GPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 476 ---~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i---~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
...++..|+.+|..++..++.....+.+.|.. ..|..+.. ++...+..++++|.++.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 36789999999999999999988888887653 33333333 44445677888888875
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.85 E-value=1.8e-09 Score=78.42 Aligned_cols=47 Identities=28% Similarity=0.586 Sum_probs=41.5
Q ss_pred CCccCcccccCCCC----CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKD----PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~d----Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+++.||||++.+.+ |+.++|||.||..||.+|+..+ .+||.|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46889999999976 7778999999999999999964 88999998764
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.84 E-value=8.5e-09 Score=114.77 Aligned_cols=191 Identities=15% Similarity=0.149 Sum_probs=146.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHH-HHhcCCHHHHHHHHHHHHhccCCc--chhhH
Q 008486 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVH-VLRIGSMEARENAAATLFSLSVID--ENKVT 376 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~ 376 (564)
.|.+++..|++++++.|..|+++|.||+.++..+..+...|++..++. +|.+.+.+++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 445567889999999999999999999988888999999999887654 677789999999999999999664 56788
Q ss_pred hhhcCChHHHHHhhccCC---------------------HHHHHHHHHHHHHhhcccCh-hHHHHHcCChHHHHHhccC-
Q 008486 377 IGASGAIPPLVTLLSEGT---------------------QRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTE- 433 (564)
Q Consensus 377 i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~nL~~~~~~-~~~i~~~g~i~~Lv~lL~~- 433 (564)
+.+.|++++|..++.... ..+...++.+|++||...+. ...+...++++.|+..|.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 899999999999986321 12345678899999876554 3466788999999999854
Q ss_pred --CCcchHHHHHHHHHHhcCC-hhhHHHHHhcCChH---HHHHHHhcCChHHHHHHHHHHHHHh
Q 008486 434 --PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVP---VLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 434 --~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~---~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
...+++..|+.+|..|+.. ++....+.+.+... .++.+ ..++...+..++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 2357899999999999875 45566666665432 33333 3344445778889999985
No 100
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=9.3e-10 Score=84.36 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=46.2
Q ss_pred CCCCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008486 160 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
.+.+.+.||||++.+.+ ++++|||+||..||.+|+. ...+||.|+.++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 8999999999999999998 6789999999887443
No 101
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=1.5e-09 Score=82.67 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=42.0
Q ss_pred CCccCcccccCCCCC-EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dP-v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.+..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 467899999999998 67899999999999999985 578999999876
No 102
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=4.7e-09 Score=80.11 Aligned_cols=50 Identities=18% Similarity=0.578 Sum_probs=42.5
Q ss_pred CCCCccCcccccCCC---CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
...+..||||++.+. .++.++|||+||..||.+|+.. +.+||.|+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 456789999999884 4567899999999999999985 5679999998864
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.81 E-value=2.6e-09 Score=77.55 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=42.0
Q ss_pred CCCccCcccccCCCC---CEEcC-CCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 162 PDDFRCPISLELMKD---PVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~d---Pv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.++..||||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 467899999999987 78886 9999999999999984 778999998764
No 104
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=4.1e-09 Score=81.65 Aligned_cols=52 Identities=23% Similarity=0.481 Sum_probs=44.2
Q ss_pred CCCCCccCcccccCCCCCEEc---CCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 008486 160 VIPDDFRCPISLELMKDPVIV---STGQTYERSCIEKWLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~---~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 212 (564)
....+..||||++.+.+|..+ +|||.||+.||.+|+.. +.+||.|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 456789999999999877654 99999999999999985 45899999988643
No 105
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.3e-09 Score=79.41 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.+++.||||++.+.+|++++|||+||+.||.+ ....||.|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 46789999999999999999999999999987 36689999998763
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.77 E-value=4e-09 Score=85.25 Aligned_cols=50 Identities=18% Similarity=0.525 Sum_probs=43.5
Q ss_pred CCCCccCcccccCCCC---CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~d---Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
..++..||||++.+.+ ++.++|||.||..||.+|+. .+.+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 4567899999998877 77889999999999999998 46799999998763
No 107
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.76 E-value=2e-07 Score=106.42 Aligned_cols=273 Identities=16% Similarity=0.130 Sum_probs=190.0
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHH--HhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCC
Q 008486 257 TKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIA--EAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICE 330 (564)
Q Consensus 257 ~~i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~ 330 (564)
..++.|++.+.++ ++..+..++..|..++...... .+. -..+++.+...+.++ +..+|..|+.+|.++...-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH--HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh--hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5688999999988 8999999999999998643111 111 124667788888876 6889999999999886421
Q ss_pred c-c-chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh-hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 331 D-N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 331 ~-~-~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
. + .........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 1 1 111111225666777777778999999999999887543211 112223678888888888889999999999988
Q ss_pred hhcccC---------------------hhHHHHHcCChHHHHHhccC-------CCcchHHHHHHHHHHhcCChhhHHHH
Q 008486 408 LCIYQG---------------------NKGKAVRAGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAI 459 (564)
Q Consensus 408 L~~~~~---------------------~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i 459 (564)
++.... ....-.-..+++.+++.|.. .+..++..|..+|..++..-.. .+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh
Confidence 875421 00000113456777777752 3457888899998888754321 12
Q ss_pred HhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 460 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
+. .+++.+...+.+.++.+|+.|+.+|..++.+.. ....... ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 22 356667777778889999999999999987653 3332222 34889999999999999999999999998875
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.76 E-value=1.9e-09 Score=93.80 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=47.6
Q ss_pred CCCccCcccccCCCCC-------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCc
Q 008486 162 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 216 (564)
Q Consensus 162 p~~f~Cpic~~lm~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 216 (564)
++++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|++.+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence 5689999999999999 88999999999999999984 568999999998666544
No 109
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=6.5e-09 Score=80.75 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=43.4
Q ss_pred CCCCccCcccccCCCCC---EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKDP---VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dP---v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
..++..||||++.+.++ +.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34678999999999887 67899999999999999985 5789999998764
No 110
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.72 E-value=4.8e-08 Score=111.42 Aligned_cols=274 Identities=11% Similarity=0.077 Sum_probs=181.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc--h
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK--G 334 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~--~ 334 (564)
.++.+.+.+.+.++..+..|+..|..++.... ..-.... ..+++.|+..+.++++.++..++++|..++..-... .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 44555566678899999999999999986432 2211122 257899999999999999999999999987532110 0
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--hhhHhhh--cCChHHHHHhhccCC--HHHHHHHHHHHHHh
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGA--SGAIPPLVTLLSEGT--QRGKKDAATALFNL 408 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL 408 (564)
.-.-...++.++..|++. +.++..|+++|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+|..+
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 001234577788888765 8999999999998875311 0111111 245778888887543 68899999999999
Q ss_pred hcccChhHHHHHcCChHHHHHhccCC---------------CcchHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHHH
Q 008486 409 CIYQGNKGKAVRAGVVPTLMHLLTEP---------------GGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVI 472 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~~~---------------~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL 472 (564)
+........-.-..+++.++..|... ...++..++.+|.+++..-.. ..... ...++.++.++
T Consensus 528 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l 606 (861)
T 2bpt_A 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLL 606 (861)
T ss_dssp HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHH
T ss_pred HHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHH
Confidence 87655432211124566666666421 234667788888877643211 11111 13677788888
Q ss_pred hcCCh-HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 473 GNGSP-RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 473 ~~~~~-~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
...+. .+++.++.++..++...+....... ..+++.|...+.+.++.++..|..++..+.+.
T Consensus 607 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 607 EKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 87766 8899999888888754322221111 23788888888888888999999988877653
No 111
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.70 E-value=1e-08 Score=86.66 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCccCcccccCCCCCE------------------EcCCCCcccHHHHHHHHHh----CCCCCCCCCCCCcC
Q 008486 163 DDFRCPISLELMKDPV------------------IVSTGQTYERSCIEKWLEA----GHRTCPKTQQTLTS 211 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv------------------~~~cg~t~~r~ci~~~~~~----~~~~CP~~~~~l~~ 211 (564)
.+..||||++.|.+|+ .++|||.||+.||.+|+.. .+.+||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4579999999998875 6799999999999999963 46789999998763
No 112
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.68 E-value=1.9e-07 Score=106.69 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHH-HHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc
Q 008486 256 RTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRV-AIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 332 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~ 332 (564)
...++.++..+.++ +..++..|+.+|..+...-..+-. ......+++.+..++.+++.+++..++.+|..++.....
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 35667778888776 688999999999988753222110 111123577788888888999999999999998753221
Q ss_pred -chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch----------------h---hHh--hhcCChHHHHHhh
Q 008486 333 -KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN----------------K---VTI--GASGAIPPLVTLL 390 (564)
Q Consensus 333 -~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~----------------~---~~i--~~~g~i~~Lv~lL 390 (564)
-...+....++.++..+.+.+.+++..|+..+..++..... + ..+ .-...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 11222346788888888888889999999888888643200 0 000 0023566777777
Q ss_pred cc-------CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh--hHHHHHh
Q 008486 391 SE-------GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE--GKAAIGA 461 (564)
Q Consensus 391 ~~-------~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~~~~i~~ 461 (564)
.. .+..+++.|+.+|..++..... .++ ..+++.+...+.+++..++..|+.+|+.++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 2346788888899888765332 122 2466677777888889999999999999987542 222222
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH--HHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHH
Q 008486 462 AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL--AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 462 ~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 537 (564)
...++.++..|.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+.....
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 2478999999998899999999999999987543211 001 123677788888775 8999999999999886543
No 113
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.66 E-value=7.2e-07 Score=98.12 Aligned_cols=252 Identities=12% Similarity=0.037 Sum_probs=181.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-chh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGS 335 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~-~~~ 335 (564)
..++.+.+.|.+.++.++..|+.++.++...+++.. .++++.+..+|.+.++.++..|+.+|..++..... ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 457888888999999999999999999998777643 26788888999999999999999999999864322 112
Q ss_pred hhccCChHHHHHHHhc---------------CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc------CC
Q 008486 336 IVSSGAVPSIVHVLRI---------------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE------GT 394 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~---------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~ 394 (564)
+ ...++.++.+|++ .++-.+...+.+|..+...++.. ....++.|..++.. .+
T Consensus 217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 2 3578888888764 36778888889999888654321 12345556665532 24
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc
Q 008486 395 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN 474 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 474 (564)
..+...|++++.++...+ .+.. .++..|..+|.+.+++++..|+..|..++.... .++. .....++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC
Confidence 577888888888875432 1222 467788888888888999999999988875421 1222 246677788888
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 475 GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 475 ~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
.+..+|..|+.+|..++.... ... ++..|...+.+.+...|..+...|..++..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 888889999998888887542 111 346677777777888888888888777653
No 114
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.66 E-value=1.2e-06 Score=96.44 Aligned_cols=256 Identities=17% Similarity=0.110 Sum_probs=182.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 337 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~ 337 (564)
.....++.+.+.+.+.++-+--.+..++..+++... -++..|.+-|.++++.++..|+++|+++... .+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EM- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HH-
Confidence 455666778888888888877788888876654222 2457888889999999999999999999731 12
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHH
Q 008486 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 417 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 417 (564)
....++.+...|.+.++.+|..|+.++.++....+. +. .++++.+..++.+.++.++..|+.+|..++........
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 235678899999999999999999999999764321 11 26788888999999999999999999999875432211
Q ss_pred HHHcCChHHHHHhccC---------------CCcchHHHHHHHHHHhcCChhh-HH-------H----------------
Q 008486 418 AVRAGVVPTLMHLLTE---------------PGGGMVDEALAILAILSSHPEG-KA-------A---------------- 458 (564)
Q Consensus 418 i~~~g~i~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~~~~-~~-------~---------------- 458 (564)
.. ...++.++.+|.+ .++..+...+.+|..++..+.. .. .
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 22 2567777766642 3566667777777777653211 00 0
Q ss_pred ------HHh--------cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHH
Q 008486 459 ------IGA--------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRK 524 (564)
Q Consensus 459 ------i~~--------~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~ 524 (564)
+.. ..++..|..+|.+.++.+|..|+.+|..++...+... ......+...+.+.+..+|..
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHH
Confidence 000 0245667777777778888888888888876544322 124567888888899999999
Q ss_pred HHHHHHHHHh
Q 008486 525 AAQLLERMSR 534 (564)
Q Consensus 525 A~~lL~~l~~ 534 (564)
|..+|..+..
T Consensus 370 alelL~~l~~ 379 (618)
T 1w63_A 370 AMELSFALVN 379 (618)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 9999988765
No 115
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=5.1e-09 Score=81.07 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCCCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
+.+++.|+||++.+.+||.++|||+ ||..|+.+| ..||.|+.++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3467899999999999999999999 999999988 679999998763
No 116
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.64 E-value=6.1e-08 Score=102.01 Aligned_cols=267 Identities=13% Similarity=0.062 Sum_probs=181.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCccch-hh
Q 008486 260 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICEDNKG-SI 336 (564)
Q Consensus 260 ~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~~~~-~i 336 (564)
..|+..|.+.+..+ ..++..|..++....... .-.+++|.|+..+.++ ++.+++.|+.+|..++.+..... .-
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 44667777766666 777788888876421110 1146889999999988 89999999999999976421110 11
Q ss_pred hccCChHHHHHHHhcC--CHHHHHHHHHHHHhccCCcc-hh-hHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 337 VSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDE-NK-VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~-~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
.-...++.++..|.+. +.++|..|+.++.++...-. +- ......-.++.|...+.+++..++..++.+|..++...
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1134778888889887 79999999999998753211 10 01111124666777777888999999999999998654
Q ss_pred ChhH-HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHH------------------HHh---cCChHHHHH
Q 008486 413 GNKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAA------------------IGA---AEAVPVLVE 470 (564)
Q Consensus 413 ~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~------------------i~~---~g~i~~Lv~ 470 (564)
.... ..+..++++.++..+.+.+..++..|+.++..++........ +.+ ...+|.++.
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 3221 111126777778888888889999999999988764311110 111 124566666
Q ss_pred HHhc-------CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 471 VIGN-------GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 471 lL~~-------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.|.. .+...|..|+.+|..++..-+. .+. ..+++.+...+.+.+.+.|..|..+|..+..
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6643 2356889999999998875432 122 2467788888889999999999999998885
No 117
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.63 E-value=1.7e-08 Score=101.97 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=44.8
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 008486 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 212 (564)
...||||.+.+.+||.++|||+||..|+..|+..+..+||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999999999999999999999999986678999999988743
No 118
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.63 E-value=5e-07 Score=102.93 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=187.0
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhh-H-HHHHHhCCHHHHHHhhCCC--CHHHHHHHHHHHHhcccCCc
Q 008486 257 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADN-R-VAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 257 ~~i~~Lv~~L~s~-~~~~~~~al~~L~~L~~~~~~~-r-~~i~~~g~i~~Lv~lL~~~--~~~i~~~A~~~L~nLs~~~~ 331 (564)
..++.|++.+.++ ++..+..++..|..++...... + ..-....+++.++..+.++ +..+|..|+.+|.++...-.
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988 8999999999999998643211 0 0001123567778888886 88999999999988743111
Q ss_pred -c-chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--hhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 332 -N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 332 -~-~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
+ .........++.+...+.+++++++..++.+|..++.... ....+ ....++.+...+.+.+..++..|+.++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 0000112346667777778899999999999998875422 11111 11556677777888889999999999998
Q ss_pred hhcccChh-----------------HHHHHcCChHHHHHhccCC-------CcchHHHHHHHHHHhcCChhhHHHHHhcC
Q 008486 408 LCIYQGNK-----------------GKAVRAGVVPTLMHLLTEP-------GGGMVDEALAILAILSSHPEGKAAIGAAE 463 (564)
Q Consensus 408 L~~~~~~~-----------------~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~~~~~~i~~~g 463 (564)
++...... ..-.-..+++.++..|... +..++..|..+|..++..-. ..++. .
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~-~ 369 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILE-P 369 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHH-H
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHH-H
Confidence 87653110 0111145778888888642 24678888899988875322 11111 2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
+++.+.+.+.+.+...|+.|+.+|..++.+.. ......+. .+++.|+..+.+.++.+|..+.++|..+...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45666667777889999999999999997642 33333333 4788999999999999999999998888765
No 119
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.59 E-value=4.9e-06 Score=77.11 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=163.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc-cc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NK 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~-~~ 333 (564)
+.+.+..|+.+|...|+.++..++..|..+.+.-+.......-..+++.++.+++++|..+-..|+.+|..|-.+.+ ..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34678899999999999999999999999998754444444445688999999999999999999999998866433 23
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
..+. -.+..+..+++++++-.+..|+..+..|......+ +++..+.+++.+.+.+++..++.+|.|++...+
T Consensus 111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3332 13577888899999999999999999995443333 356889999988899999999999999998765
Q ss_pred hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH--------hcCChHHHHHHHH
Q 008486 414 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI--------GNGSPRNRENAAA 485 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL--------~~~~~~~k~~A~~ 485 (564)
.... -.+++.-+-.+|.+.++.+++.|+.+|..+...+-. .+.++.+..++ ..|.|..+..|-.
T Consensus 183 D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 183 DSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp SCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4321 125666677889899999999999999999877622 23444444333 2366777766643
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=8.3e-09 Score=80.11 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=40.4
Q ss_pred CCCCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
+.+++.||||++.+.+||.++|||+ ||..|+.+ ...||.|+.++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3567899999999999999999999 99999964 3689999998864
No 121
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.51 E-value=8.7e-08 Score=113.99 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=188.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..+..|++.+.+.|.+.+..|...|.+..+.....-..-....+++.|++.|.++++.+|..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 5688899999999999999999999887643211000001124578899999999999999999999998753222 11
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchh------hHhhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 008486 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK------VTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLC 409 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~ 409 (564)
-...++.++..|.+++..+|..|+.+|..++..-... ..-.....+|.|+..+. +++..++..|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1234677777777888888999999988887442211 01112357899999998 478899999999999988
Q ss_pred cccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-hHHHHHHHHHHH
Q 008486 410 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLV 488 (564)
Q Consensus 410 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~k~~A~~~L~ 488 (564)
........-.-..+++.|+..|.+++..++..|+.+|..++...... +. ...++.++..|...+ +..+..++.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 53221100011346777888888888899999999999998654322 22 246888888886543 456777888888
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 489 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 489 ~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
.++...+..... .-..+++.+...+.+.++.+|+.|..++..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 877643321111 0135788999999888899999999988887764
No 122
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.48 E-value=1.9e-08 Score=87.42 Aligned_cols=56 Identities=20% Similarity=0.465 Sum_probs=48.8
Q ss_pred CCCCccCcccccCCCCC-------EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 161 IPDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
.++.+.||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+..+....+.++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 35678999999999887 88899999999999999985 6789999999987766654
No 123
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=9.9e-07 Score=84.81 Aligned_cols=186 Identities=12% Similarity=0.082 Sum_probs=139.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcccChhHHHHH
Q 008486 343 PSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIYQGNKGKAVR 420 (564)
Q Consensus 343 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~ 420 (564)
+.+.+.+.+.++..|..|+..|..+... +...... ...+++.|..++ ++.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4478888889999999999999988754 2211000 124577788888 488999999999999999964332212223
Q ss_pred cCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHH-H
Q 008486 421 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-DQQY-L 498 (564)
Q Consensus 421 ~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~-~~~~-~ 498 (564)
..+++.|+..+.+.+..++..|..+|..+...... ..+++.+...|++.++.+|..++..|..+... ++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 45899999999999999999999999998765421 12577888889988999999999999995443 3331 1
Q ss_pred HHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 499 AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 499 ~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
...+. .+++.|..++.+.++++|..|..+|..+...-
T Consensus 171 ~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 171 KKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 12222 48899999999999999999999999888654
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.1e-07 Score=74.84 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=39.8
Q ss_pred CCccCcccccCCCC--------------CEEc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 163 DDFRCPISLELMKD--------------PVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 163 ~~f~Cpic~~lm~d--------------Pv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
++-.|+||++.+.+ ++.+ +|||.|+..||.+|+.. +.+||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 46679999998877 4455 59999999999999984 5799999998753
No 125
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.41 E-value=9.9e-07 Score=84.80 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=138.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccchhhh--
Q 008486 261 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIV-- 337 (564)
Q Consensus 261 ~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~~~i~-- 337 (564)
.+.+.+.+.+|..+..|+..|..+....+.....- -..+++.|...|. +.+..++..|+.+|..|+..-. ..+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 47888899999999999999999987633211000 0135778888894 8899999999999999985321 1221
Q ss_pred ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC-h--
Q 008486 338 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-N-- 414 (564)
Q Consensus 338 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~-- 414 (564)
-...++.|+..+.+.+..+|+.|..+|..+...... ...++.|...+++.++.++..++.+|..+..... .
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 244788899999999999999999999998765332 2357888899999999999999999999654422 1
Q ss_pred hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008486 415 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 415 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
-...+ ..+++.|+.+|.+.+.+++..|..++..++..
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 11222 36899999999999999999999999988743
No 126
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.40 E-value=1.6e-07 Score=70.27 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCCccCcccccCCCCCEEc--CCCCc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 162 PDDFRCPISLELMKDPVIV--STGQT-YERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~--~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+++..|+||++-..+++.+ +|||. ||..|+.+|+. .+..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 3567899999999999987 99999 89999999997 4678999999875
No 127
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=8.8e-08 Score=77.83 Aligned_cols=66 Identities=14% Similarity=0.355 Sum_probs=47.5
Q ss_pred CCccCcccccCCCCCEEc---CCCCcccHHHHHHHHHh----C---CCCCCC--CCCC--CcCCCCCchHHHHHHHHHHH
Q 008486 163 DDFRCPISLELMKDPVIV---STGQTYERSCIEKWLEA----G---HRTCPK--TQQT--LTSTAVTPNYVLRSLIAQWC 228 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~---~cg~t~~r~ci~~~~~~----~---~~~CP~--~~~~--l~~~~l~~n~~l~~~i~~~~ 228 (564)
+.|.||||.+.+.+|+.+ +|||.||+.|+..|+.. | ...||. |+.. ++...+ .+....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999764 69999999999999963 3 247999 9887 543221 1222245556665
Q ss_pred H
Q 008486 229 E 229 (564)
Q Consensus 229 ~ 229 (564)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.33 E-value=2.4e-07 Score=69.01 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCccCcccccCCCCCEEc--CCCCc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKDPVIV--STGQT-YERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~--~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
....|+||++-.+|++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 456899999999999988 99998 999999999974 578999999875
No 129
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.33 E-value=1.2e-06 Score=104.27 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccc-
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK- 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~- 333 (564)
....++.|++.|.+.++.+|..|+..|..++...+.. . -..+++.|+..|.++++.+|..|+.+|..++..-...
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3467888999999999999999999999998654331 1 1236788888898888899999999999886532211
Q ss_pred -----hhhhccCChHHHHHHHh-cCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 334 -----GSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 334 -----~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
..-.....++.++..+. ++++.++..|+.+|..++......-.-.-...++.|+..+.+.+..++..|+.+|..
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11123457888899998 478999999999999987421100000112456777778888889999999999999
Q ss_pred hhcccChhHHHHHcCChHHHHHhccCC-CcchHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHHhcCChHHHHHHH
Q 008486 408 LCIYQGNKGKAVRAGVVPTLMHLLTEP-GGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNGSPRNRENAA 484 (564)
Q Consensus 408 L~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~k~~A~ 484 (564)
++...+.. + -...++.+++.|... +..++..++.++..++..... .+.. ..+++.++..+.+.++.+|+.|+
T Consensus 202 l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~ 276 (1230)
T 1u6g_C 202 LVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCI 276 (1230)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred HHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 98765432 1 235678888887553 345666778888777643211 1211 25788899999888889999999
Q ss_pred HHHHHHhcCC
Q 008486 485 AVLVHLCAGD 494 (564)
Q Consensus 485 ~~L~~L~~~~ 494 (564)
.++..++...
T Consensus 277 ~~l~~l~~~~ 286 (1230)
T 1u6g_C 277 QAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHC
Confidence 9998887654
No 130
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.30 E-value=4.8e-05 Score=83.48 Aligned_cols=255 Identities=11% Similarity=0.057 Sum_probs=176.6
Q ss_pred hHHHHHHHHH--ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008486 257 TKIEILLCKL--TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L--~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
..++.+.+.| .+.++.++..|+.++.++...+++.. ...+.++.+..+|.+.++.++..|+.+|..++.....
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4556777788 77899999999999999998766532 1248999999999999999999999999998764321
Q ss_pred hhhccCChHHHHHHHh----cC-------------CHHHHHHHHHHHHhccCCc--chhhHhhhcCChHHHHHhhc----
Q 008486 335 SIVSSGAVPSIVHVLR----IG-------------SMEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLS---- 391 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~----~~-------------~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~---- 391 (564)
.+ ...++.+++.|. .+ ++-.+.....+|..+...+ +.+..+. ..++.++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 134455554443 22 4667888888888887532 2222222 13333333221
Q ss_pred -----cCC--HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCC
Q 008486 392 -----EGT--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA 464 (564)
Q Consensus 392 -----~~~--~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 464 (564)
+.+ ..+...++.++..+...+ .++. .++..|..+|.+.+++++..|+..|..++........+. ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 112 267778888888886322 2222 467788899988889999999999999986643222332 35
Q ss_pred hHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 465 VPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 465 i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
...++..|+ +.++.+|..|+.+|..++. +.+... ++..|...+.+.+...+..+...+..+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 778888888 8889999999999999985 344433 45567777777888888888877777764
No 131
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.30 E-value=4.8e-07 Score=74.77 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=39.8
Q ss_pred CCccCcccccCCCCC-----------------E-EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKDP-----------------V-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dP-----------------v-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
++-.|+||++.|.+| + .++|||.|+..||.+|+. .+.+||.|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 356799999988876 3 369999999999999998 4789999999864
No 132
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=2.1e-07 Score=72.77 Aligned_cols=45 Identities=18% Similarity=0.416 Sum_probs=40.0
Q ss_pred CCCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.++..|+||++.+.+||.++|||. ||..|+..| ..||.||.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 456789999999999999999999 999999876 379999998863
No 133
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.21 E-value=2.3e-07 Score=80.25 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=92.8
Q ss_pred hCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHh
Q 008486 298 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 377 (564)
Q Consensus 298 ~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 377 (564)
...++.|+.+|+++++.+|..|+++|.++.. ..++.|+..|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3567889999999999999999888876632 136899999999999999999999998862
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHH
Q 008486 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 448 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~ 448 (564)
..+++.|+.++.++++.++..|+++|.++.. ..+++.|+.+|.++++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2358999999999999999999999998852 2468889999988889999999888764
No 134
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.21 E-value=9.3e-05 Score=81.14 Aligned_cols=256 Identities=15% Similarity=0.125 Sum_probs=176.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh--CCCCHHHHHHHHHHHHhcccCCccch
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
-.+..+.+.|.++++..+.-|++.|..+. .++ ++ ..+++.+.++| .+.++.+|..|+.++.++....+ +
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVG--SRE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence 34567788889999999999999999985 333 22 24568889999 88899999999999999976322 2
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc----cC-------------CHHH
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----EG-------------TQRG 397 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~-------------~~~~ 397 (564)
.+-..+.++.+..+|.+.++.++..|+.++..++..+.. . -...++.++..|. .+ ++-.
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 332358999999999988999999999999999754421 1 1133444444433 21 4667
Q ss_pred HHHHHHHHHHhhcccC--hhHHHHHcCChHHHHHhccC-C--------C--cchHHHHHHHHHHhcCChhhHHHHHhcCC
Q 008486 398 KKDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLLTE-P--------G--GGMVDEALAILAILSSHPEGKAAIGAAEA 464 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~--~~~~i~~~g~i~~Lv~lL~~-~--------~--~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 464 (564)
+...+..|..++..++ .+..+.+ .+..++..+.+ + + ..+.-.|+.++..+...++... .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 7777888887775432 2222222 33334333211 1 2 2677788888888875443322 25
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh-cCCHHHHHHHHHHHHHHHhh
Q 008486 465 VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 465 i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~~~ 535 (564)
+..|..+|.+.++.+|-.|+..|..++...+. . .++. .....++..+. +.+..+|.+|..+|..+...
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 66788889888899999999999999876642 1 1222 35667777777 88899999999998877643
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.20 E-value=1.2e-05 Score=74.64 Aligned_cols=221 Identities=16% Similarity=0.076 Sum_probs=159.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHhcccCCcc-chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-hhhHh
Q 008486 300 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTI 377 (564)
Q Consensus 300 ~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i 377 (564)
.+..|+.+|...|+.++.+|+.+|..+-..-+. .....-...++.++.++++.+..+.-.|+.+|..|-.+-+ ....+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 567899999999999999999999999765332 2222235678999999999999999999999998876532 22211
Q ss_pred hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHH
Q 008486 378 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 378 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
...+..|.+++.++++-.+..|+..|..|......+ +++..+..++.+.+.+++..++.+|.+++...+...
T Consensus 114 --~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 --LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp --HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred --HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 134688899999999999999999999984333332 456678888888999999999999999987543221
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH--HHHHHHHcCCHHHHHHhh-hcCCHHHHHHHHHHHHHH
Q 008486 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ--YLAEAKELGVMGPLVDLA-QNGTDRGKRKAAQLLERM 532 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~Ll-~~~~~~~k~~A~~lL~~l 532 (564)
.+ .+++..+-++|++.++.+++.|..+|..+....-. ....+. ++....-.+. ..|.|..+.+|...-..+
T Consensus 186 i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 186 HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 11 23566777889999999999999999998875311 011110 1222233344 467888888887665443
No 136
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.18 E-value=6.3e-06 Score=79.60 Aligned_cols=189 Identities=8% Similarity=0.070 Sum_probs=135.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-HHhhChhhHHHHHH-hCCHHHHHHhh-CCCCHHHHHHHHHHHHhcccCCccchhhh-
Q 008486 262 LLCKLTSGSPEDQRSAAGEIRL-LAKRNADNRVAIAE-AGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKGSIV- 337 (564)
Q Consensus 262 Lv~~L~s~~~~~~~~al~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~~~~~~i~~~A~~~L~nLs~~~~~~~~i~- 337 (564)
+-+.+.+.+|..+..|+..|.. +..+.+.....-.+ ..++..|...+ ++.+..++..|+.+|..|+..-.. ..+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 5667789999999999999999 87543321100011 13467888888 688999999999999999842210 1221
Q ss_pred --ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008486 338 --SSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 338 --~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
..-.++.++..+++....++..+..+|..++..- +....-.-...++.|+..|++.++.++..++.+|..+......
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1336888899988888899998888888887532 1110000113677888888888999999999999998876543
Q ss_pred --hH--HHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcC
Q 008486 415 --KG--KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 415 --~~--~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
.. ..+...+++.|.+++.+.+..++..|..+|..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 22226899999999999999999999999997763
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.18 E-value=1.5e-05 Score=82.37 Aligned_cols=263 Identities=12% Similarity=0.105 Sum_probs=173.3
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHH--HHHHhhCC-CCHHHHHHHHHHHHhcccCCccchhhhccC--Ch
Q 008486 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIP--LLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSG--AV 342 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~-~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g--~i 342 (564)
.+++-.+..+...+..++..+......+ ...+. .++..|.. ++...+.-++.+|..|...++.|..+.+.+ .+
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM 213 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence 3445556666666666653332211111 01112 34455555 345667788999999988888898887543 46
Q ss_pred HHHHHHHhc---------------C--CHHHHHHHHHHHHhccCCcchhhHhhhcCCh--HHHHHhhccC-CHHHHHHHH
Q 008486 343 PSIVHVLRI---------------G--SMEARENAAATLFSLSVIDENKVTIGASGAI--PPLVTLLSEG-TQRGKKDAA 402 (564)
Q Consensus 343 ~~Lv~lL~~---------------~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~ 402 (564)
+.++.+++. + ..+++.+++.+++-|++.++....+...+.. +.|+..++.. .+++.+-++
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 677655441 1 3667899999999999998877777666543 5677777764 689999999
Q ss_pred HHHHHhhcccC-h----hHH-HHHcCChHHHHHhccC---CCcchHHHHHHHHH-------HhcCChhhHHH--------
Q 008486 403 TALFNLCIYQG-N----KGK-AVRAGVVPTLMHLLTE---PGGGMVDEALAILA-------ILSSHPEGKAA-------- 458 (564)
Q Consensus 403 ~aL~nL~~~~~-~----~~~-i~~~g~i~~Lv~lL~~---~~~~~~~~al~~L~-------~L~~~~~~~~~-------- 458 (564)
.+|.||..... + ... ++..++ ..+++.|.. .++++.+..-.+.. .++..++...+
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 99999988652 1 122 233444 556666644 56665544332222 22222222211
Q ss_pred ----------------HHhc--CChHHHHHHHhc----------CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 008486 459 ----------------IGAA--EAVPVLVEVIGN----------GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPL 510 (564)
Q Consensus 459 ----------------i~~~--g~i~~Lv~lL~~----------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 510 (564)
+.+. .++..|+++|.+ .++.+..-|+.=|..++...|..+..+-+.|+-..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 2122 367899999974 246677778888899999998888888889999999
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHH
Q 008486 511 VDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 511 ~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
+.|+.+.++++|..|..+++-+-
T Consensus 453 M~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 453 MELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999886653
No 138
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=3.5e-07 Score=91.96 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=41.6
Q ss_pred CCCCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
+.+++.||||++.+.+||.++|||+ ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567999999999999999999999 999999987 679999998863
No 139
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.4e-06 Score=64.55 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=39.9
Q ss_pred CCCccCcccccCCCCCEEcCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.++..|+||++...++|.++|||. ||..|+.. ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 457899999999999999999999 99999984 4689999998863
No 140
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.1e-05 Score=78.00 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=136.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-ccCC-cchhhHhhh-cCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcccC-hhHH-H
Q 008486 345 IVHVLRIGSMEARENAAATLFS-LSVI-DENKVTIGA-SGAIPPLVTLL-SEGTQRGKKDAATALFNLCIYQG-NKGK-A 418 (564)
Q Consensus 345 Lv~lL~~~~~e~~~~a~~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~-~~~~-i 418 (564)
+...+.+.++.-|..|+..|.. +... .+....... ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5667788899999999999999 8643 211100111 24577788888 67789999999999999986433 1111 1
Q ss_pred HHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHH--hcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-
Q 008486 419 VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG--AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ- 495 (564)
Q Consensus 419 ~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~- 495 (564)
.-.-+++.++..+.+....+++.+..+|..++..-+. .... =..+++.|+..|.+.++.+|+.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2224788999999988888999988888877653211 0000 01257788888988899999999999999876543
Q ss_pred --HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 496 --QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 496 --~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
......+...+++.|..++.+.++.+|..|..+|..+...-
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 22223332569999999999999999999999998887543
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=2.3e-07 Score=80.29 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=92.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..++.++..|++.++.++..|+..|..+.. ..++.|+.+|+++++.+|..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 457788999998888888888877765431 136899999999999999999999988752
Q ss_pred hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008486 337 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 337 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
..+++.|+..|+++++.+|..|+++|..+. ...+++.|+.++++.+..++..|+.+|.++
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 245899999999999999999999999875 234678999999988999999999988753
No 142
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=6.9e-06 Score=64.02 Aligned_cols=51 Identities=16% Similarity=0.390 Sum_probs=42.5
Q ss_pred CCCCccCcccccCC--CCCEEcCCC-----CcccHHHHHHHHHhC-CCCCCCCCCCCcC
Q 008486 161 IPDDFRCPISLELM--KDPVIVSTG-----QTYERSCIEKWLEAG-HRTCPKTQQTLTS 211 (564)
Q Consensus 161 ~p~~f~Cpic~~lm--~dPv~~~cg-----~t~~r~ci~~~~~~~-~~~CP~~~~~l~~ 211 (564)
..++..|+||++-+ .+|++++|+ |.|...||.+|+... ..+||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999766 478888996 999999999999864 4799999998864
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.00 E-value=0.00011 Score=72.52 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
.-.+..+++.|.+++....+.++..|+.+-..+...-..++..+++..|++.....+..++..++++|.+|..+..+...
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 35678899999999999999999999995546777888889999999999999999999999999999999988777766
Q ss_pred hh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-hhhHhhhc----------CChHHHHHhhc---cCCHHHHHH
Q 008486 336 IV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGAS----------GAIPPLVTLLS---EGTQRGKKD 400 (564)
Q Consensus 336 i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~~ 400 (564)
++ ....|..+..++.+....+.+.|+.+|..+...++ +...+.+. .-+..|+.+|. +++.+++..
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 66 67788999999998889999999999999987764 33222221 24789999997 678999999
Q ss_pred HHHHHHHhhcccCh---hHHHH----HcCChHHHHHhccC
Q 008486 401 AATALFNLCIYQGN---KGKAV----RAGVVPTLMHLLTE 433 (564)
Q Consensus 401 a~~aL~nL~~~~~~---~~~i~----~~g~i~~Lv~lL~~ 433 (564)
|+..|-.+....+. +..++ +.|+=..+...+..
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 98887776655332 22333 33444445555654
No 144
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.99 E-value=0.00032 Score=78.67 Aligned_cols=235 Identities=17% Similarity=0.126 Sum_probs=161.5
Q ss_pred HHHHHHHHHccCC--------HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccC
Q 008486 258 KIEILLCKLTSGS--------PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC 329 (564)
Q Consensus 258 ~i~~Lv~~L~s~~--------~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~ 329 (564)
.+..|...|.+.+ +.++..|+..|....-++.. ..+++.|..+|.+++..+++.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4555666666544 45666666666665433211 12467788888887777777788888776443
Q ss_pred CccchhhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhcc-CCHHHHHHHHHHHHH
Q 008486 330 EDNKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-GTQRGKKDAATALFN 407 (564)
Q Consensus 330 ~~~~~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~n 407 (564)
..|.. ++..|+..+.+ .+..++..++..|..+.. ++...++.+++.|.. .++-++..++.+++-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33322 35667776544 477888888888887753 334567888888875 577888888888875
Q ss_pred hhcccChhHHHHHcCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH-hcCChHHHHHHHH
Q 008486 408 LCIYQGNKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GNGSPRNRENAAA 485 (564)
Q Consensus 408 L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~k~~A~~ 485 (564)
-.....|. .+|+.|+..+ .+.+..++..|+..|+.+....+ ..++.++.+| ++.++.+|..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44444443 2355566665 34667889999999997764432 3577777755 5678999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 486 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 486 ~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
+|..+|.+++. ..++..|..++++.+..++..|...|..+-.
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 99999987742 1256788888899999999999999988764
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.92 E-value=0.0002 Score=70.50 Aligned_cols=180 Identities=12% Similarity=0.051 Sum_probs=135.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-ccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHH-Hc
Q 008486 344 SIVHVLRIGSMEARENAAATLFS-LSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-RA 421 (564)
Q Consensus 344 ~Lv~lL~~~~~e~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~-~~ 421 (564)
.+++-|.+++.+.+..++.-|.. ++.+......++..+++..|+....+++...+..+++||.+|..+..+..-++ ..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34566667777777888888887 66677888889999999999999999999999999999999999877776666 45
Q ss_pred CChHHHHHhccCCCcchHHHHHHHHHHhcCChh-hHHHHHh-------c-C--ChHHHHHHHh---cCChHHHHHHHHHH
Q 008486 422 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGA-------A-E--AVPVLVEVIG---NGSPRNRENAAAVL 487 (564)
Q Consensus 422 g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~-------~-g--~i~~Lv~lL~---~~~~~~k~~A~~~L 487 (564)
..|..+..++.+....+...|+.+|..++...+ +...+.+ . | ..+.|+.+|. +++..++.+|...|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 689999999988888899999999999987654 3222221 1 2 3789999997 67789999998777
Q ss_pred HHHhcCCH--H----HHHHHHHcCCHHHHHHhhhcC--CHHHHH
Q 008486 488 VHLCAGDQ--Q----YLAEAKELGVMGPLVDLAQNG--TDRGKR 523 (564)
Q Consensus 488 ~~L~~~~~--~----~~~~~~~~g~i~~L~~Ll~~~--~~~~k~ 523 (564)
-.+..+-+ + ....+.+.|+-..+...+... ++..++
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 66554322 2 233444567767777766654 445444
No 146
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.90 E-value=1.7e-06 Score=72.54 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=0.4
Q ss_pred CccCcccccCCCCCE-----------------E-cCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 164 DFRCPISLELMKDPV-----------------I-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv-----------------~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+-.|+||++.|.+|. . ++|||.|+..||.+|+.. +.+||.||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 458999999987742 2 489999999999999984 788999998764
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.84 E-value=0.0014 Score=74.33 Aligned_cols=260 Identities=15% Similarity=0.179 Sum_probs=186.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh---hhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc--CCc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA---DNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI--CED 331 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~--~~~ 331 (564)
+.+..|.+.+...... ..|+..+..++.... ..--.++ +.+|.++..+.+....++..|-.++..+.. .+.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 6677777777654333 788888888884332 1222222 678999999999889999888877777643 222
Q ss_pred cchhhhccCChHHHHHHHhcC-CHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHh
Q 008486 332 NKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNL 408 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 408 (564)
.. ...+|.|+..|++. .+..+..|+.++..|+... ..+++.. ..||.+-+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 22 44589999999876 6999999999999998654 3444443 7889999999888999999999999999
Q ss_pred hcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh---hHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 008486 409 CIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE---GKAAIGAAEAVPVLVEVIGNGSPRNRENAAA 485 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~ 485 (564)
|..-+|+.. ...||.|++.+.+++. +..++..|..-+-..+ ..-.+ .+|.|.+-|...+...+..++.
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~ 273 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAV 273 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEE
Confidence 887666542 3678999999987643 5566665554432221 11122 3566666676677888999999
Q ss_pred HHHHHhc--CCHHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhHH
Q 008486 486 VLVHLCA--GDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFIE 537 (564)
Q Consensus 486 ~L~~L~~--~~~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~~~ 537 (564)
++-|+|. .+|..+..++ ...+|.|...... .+|++|+.|..++..|.+...
T Consensus 274 ~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred EEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999996 5655554444 3578888887654 589999999999999976543
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.73 E-value=0.00029 Score=71.02 Aligned_cols=248 Identities=11% Similarity=0.012 Sum_probs=155.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhc
Q 008486 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
-...++.+.+.|...++-.--.+..+++..++. + =++..|.+=+.++++-++-.|+++|+++...+- -
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------~ 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM------L 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------H
Confidence 344567888999988888888888888753331 1 256788888889999999999999999964321 1
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH
Q 008486 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 418 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 418 (564)
....+.+.+.|.+.++-++..|+-+...|....+. .+ .++++.+-+++.+.++-++.+|+.+|..+...+..
T Consensus 138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---- 209 (355)
T 3tjz_B 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---- 209 (355)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH----
Confidence 22456677777888999999999999988755432 22 26899999999999999999999999999865421
Q ss_pred HHcCChHHHHHhccCC---CcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 008486 419 VRAGVVPTLMHLLTEP---GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 419 ~~~g~i~~Lv~lL~~~---~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~ 495 (564)
++..|+..|... ++-.+-..+.++..++..++.. .....++.|..+|++.++.+.-.|+.++..+...+.
T Consensus 210 ----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 210 ----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA 282 (355)
T ss_dssp ----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence 334455555332 3333333444444443332111 123456677777888889999999999988755222
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008486 496 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 496 ~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
. .. ..++..|..++.+.++.+|-.|...|..+....+.
T Consensus 283 ~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 283 K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 2 11 23567788888889999999999888777765543
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.72 E-value=0.00024 Score=71.69 Aligned_cols=265 Identities=12% Similarity=0.008 Sum_probs=148.4
Q ss_pred CCchHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH
Q 008486 214 VTPNYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV 293 (564)
Q Consensus 214 l~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~ 293 (564)
..+|..+|+++=.+.....-. +. . ---.+..+.+.+.++++-++--|++.|..+.. ++.-.
T Consensus 78 ~s~d~~lKrLvYLyl~~~~~~---~~-------------e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 78 QSNDPTLRRMCYLTIKEMSCI---AE-------------D-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp GCCCHHHHHHHHHHHHHHTTT---SS-------------C-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH
T ss_pred cCCCHHHHHHHHHHHHHhCCC---HH-------------H-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH
Confidence 357788898877766543221 10 0 12567889999999999999999999999864 22211
Q ss_pred HHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcch
Q 008486 294 AIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN 373 (564)
Q Consensus 294 ~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~ 373 (564)
.+.+.+.+.|.+.++.++..|+.+...|....+ +. + .++++.+-+++.+.++-++.+|..+|..+...+..
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 245678888899999999999999888865432 22 2 36899999999999999999999999999865421
Q ss_pred hhHhhhcCChHHHHHhhccC---CHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008486 374 KVTIGASGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 374 ~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
++..|+..+..+ ++-.+-..+..+..++..++. -.....++.|.++|++.++.+.-.|+.++..+.
T Consensus 210 --------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 210 --------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp --------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred --------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 344455555443 344444444444444333210 123467778888898888999999999998876
Q ss_pred CChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHH
Q 008486 451 SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAA 526 (564)
Q Consensus 451 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~ 526 (564)
..+.. .. ..++..|..+|.+.++.+|-.|+..|..+....|...+. .-.-+.+++.+++.-+...|.
T Consensus 279 ~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 279 GCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp -------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred CCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 53321 11 235677778888888999999999999988877655433 233455666666655544443
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.66 E-value=0.00033 Score=72.43 Aligned_cols=229 Identities=15% Similarity=0.139 Sum_probs=152.4
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhC--CHHHHHHhhCC---------------C--CHHHHHHHHH
Q 008486 262 LLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAG--AIPLLVGLLST---------------P--DSRTQEHAVT 321 (564)
Q Consensus 262 Lv~~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--~~~i~~~A~~ 321 (564)
++..|.. ++...+.-++.+|..+.. .+++|..+.+.+ .+|.++.+++. + +..++.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4445554 245556778899998886 788898887653 47777654431 1 3567899999
Q ss_pred HHHhcccCCccchhhhccCCh--HHHHHHHhcC-CHHHHHHHHHHHHhccCCcc-h-h---h-HhhhcCChHHHHHhhcc
Q 008486 322 ALLNLSICEDNKGSIVSSGAV--PSIVHVLRIG-SMEARENAAATLFSLSVIDE-N-K---V-TIGASGAIPPLVTLLSE 392 (564)
Q Consensus 322 ~L~nLs~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~-~-~---~-~i~~~g~i~~Lv~lL~~ 392 (564)
+++-|+.+++....+...+.. +.++.+++.. ...+.+-+.++|.||..... + . . .+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988766666666643 5667777765 57888999999999987652 1 1 1 2222334 556666654
Q ss_pred C---CHHHHHHHHHHHH-------HhhcccC------------------------hhHHHHH--cCChHHHHHhccC---
Q 008486 393 G---TQRGKKDAATALF-------NLCIYQG------------------------NKGKAVR--AGVVPTLMHLLTE--- 433 (564)
Q Consensus 393 ~---~~~~~~~a~~aL~-------nL~~~~~------------------------~~~~i~~--~g~i~~Lv~lL~~--- 433 (564)
. |+++..+.-...- .+++.++ |..++-+ ..++..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 6666554332222 2222111 1112221 2357889999963
Q ss_pred -------CCcchHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 434 -------PGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 434 -------~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.++.+..-|+.=++.++. +|.+|..+-+.|+=..++++|.+.++++|.+|..++..+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 245566667777777664 68888888888998999999999999999999988877654
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.0065 Score=54.14 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=148.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCC-ccchhhhccCChHHHHHHHh-cCCHHHHHHHHHHHHhccCCcchhhH
Q 008486 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVT 376 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~ 376 (564)
.++..++.+|.++-..+|.+|+.++.+++..- +..+. .+..++.+++ +....+-...+.++..++...+ .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 46788999999888899999999999998632 22222 2445555554 4466666667778887774322 1
Q ss_pred hhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhH
Q 008486 377 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK 456 (564)
Q Consensus 377 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~ 456 (564)
+. .+.+|.|..=..-++++++.+...+|..+....+.- -.+++.-+..++.+++..=+-.|+..+..+..+ .
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen---~ 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---S 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---T
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---C
Confidence 11 134666666667789999999999999887654432 235667788899887765566667666655543 2
Q ss_pred HHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 008486 457 AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 533 (564)
Q Consensus 457 ~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 533 (564)
..-+. -.+|.|..+|.+++.-+|..|+.+|.+++..++..+..+. .-+.=+.+.++-++++....|..+.
T Consensus 176 ~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22222 3689999999999999999999999999999987554433 2334455667777777777776654
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.42 E-value=0.033 Score=62.62 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCCHHHHHHHHHHHHhcccCCccch
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
...+..|...|...+......|+..|..+..++.. . .++..|+..+ ...+..++..++..|+.+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 45677888888777765666677777766432221 1 1345555544 345778999899888877542
Q ss_pred hhhccCChHHHHHHHhc-CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhccc
Q 008486 335 SIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~ 412 (564)
+...++.+++.|.. .++-+|..++.++.--.....+. .+|+.|+..+. +.+..++..|+.+|+.+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 23457788888875 47777777776665333222222 24566666665 446789999999999887665
Q ss_pred ChhHHHHHcCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 008486 413 GNKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~ 491 (564)
+ ..++.++.+| .+.++.++..|..+|+.++..... ..++..|..++.+.+..++..|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 3567777766 458899999999999998754321 124667777888888999999999999998
Q ss_pred cCCHHHH-HHHHHcCCHHHHHHhhhc--CCHHHHHHHHHHHHHHH
Q 008486 492 AGDQQYL-AEAKELGVMGPLVDLAQN--GTDRGKRKAAQLLERMS 533 (564)
Q Consensus 492 ~~~~~~~-~~~~~~g~i~~L~~Ll~~--~~~~~k~~A~~lL~~l~ 533 (564)
.++.... ..+ .++...|.....+ .++.++-.|.-+...+.
T Consensus 676 ~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 676 IQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 7653220 011 1134456666654 35666666666655554
No 153
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.053 Score=48.39 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=149.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCCccc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNK 333 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~~~~ 333 (564)
+...+..+++.|..+-|.+|.-|+..|..+++.-++-...+ +..|+-+++ ++..........+++.++...+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 56788999999999999999999999999998877755443 355666654 4555555556677877765221
Q ss_pred hhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC
Q 008486 334 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 334 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
.++ .+.+|.+..-..-|++.++.+...+|..++...+.- -.+++.-+..++.+.+..-+..|+.. +..-.+
T Consensus 103 -e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnF---i~alGe 173 (253)
T 2db0_A 103 -ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNF---IEAMGE 173 (253)
T ss_dssp -HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHH---HHTCCT
T ss_pred -HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHH---HHHHhc
Confidence 111 234566666667789999999999999887543311 12467778888988775555444444 444455
Q ss_pred hhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 414 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 414 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
|..+.+. -.+|.|..+|.+.+.-++..|+.+|.+++.... -|.. |..-++-+.+.|..++......|..|..
T Consensus 174 n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6555554 678999999999999999999999999987543 3322 3344555667777777777666666543
No 154
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.12 E-value=0.00033 Score=55.53 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=39.0
Q ss_pred cCcccccCCCCCE-EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 166 RCPISLELMKDPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 166 ~Cpic~~lm~dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
.|++|.-....=. .+||+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888987776444 479999999999999998889999999998763
No 155
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.00055 Score=52.07 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=37.8
Q ss_pred CccCcccccCCCCCEE-cCCCCcccHHHHHHHHHhC-CCCCCCCCCCCc
Q 008486 164 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAG-HRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~-~~cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~ 210 (564)
.-.|+||.+.+..=.. ..|+|.|-..||.+||+.. ..+||.|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4679999988764333 3799999999999999743 378999998875
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0059 Score=59.45 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=123.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--HH-HHHh-CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc---c-c
Q 008486 262 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNR--VA-IAEA-GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED---N-K 333 (564)
Q Consensus 262 Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r--~~-i~~~-g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~---~-~ 333 (564)
|-+.|.+.+|..|..|+..|..+....+... .. +... ..++.+-..+.+.+..++..++.+|..++..-. . +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999998775433211 11 1112 345667778888999999999999887754211 1 1
Q ss_pred hh--hhccCChHHHHHH-HhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008486 334 GS--IVSSGAVPSIVHV-LRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 410 (564)
Q Consensus 334 ~~--i~~~g~i~~Lv~l-L~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 410 (564)
.. ..-..+++.|+.- |.++...++..+..++..+........ .+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 1234456767754 667778888888888877753322111 134566677788899999999999988765
Q ss_pred ccChh---HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCC
Q 008486 411 YQGNK---GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 452 (564)
Q Consensus 411 ~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 452 (564)
..... ....-..+++.+..+|.+.++.|+..|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 32211 1111124566778888999999999999999877543
No 157
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.04 E-value=0.00058 Score=49.80 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=39.3
Q ss_pred CCccCcccccCCCCCEEcCCCC-----cccHHHHHHHHHh-CCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEA-GHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~~~~l~ 210 (564)
+.-.|.||++-..+|.+.||.+ .|-+.|+.+|+.. ++.+||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4467999998777888778653 6999999999984 6789999998775
No 158
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.97 E-value=0.0045 Score=64.53 Aligned_cols=243 Identities=14% Similarity=0.042 Sum_probs=154.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh--CCHHHHHHhhCC-------C---CHHHHHHHHHHHHh
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA--GAIPLLVGLLST-------P---DSRTQEHAVTALLN 325 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~-------~---~~~i~~~A~~~L~n 325 (564)
..+.|+..|-++.|++|.-|+-.|+.+.+............ ...-.|+-+|.- + -..+|+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67889999999999999999999999876432110000111 222233333311 1 24689999998888
Q ss_pred cccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhh-hcCChHHHHHhhccCCHHHHHHHHHH
Q 008486 326 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG-ASGAIPPLVTLLSEGTQRGKKDAATA 404 (564)
Q Consensus 326 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~a 404 (564)
+ .+-+.. ..++..++..+..+.++++.-+.-.|.++ ...+. -.++++.++..|.+.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 543322 33444555555777899999999999998 11111 23667888888889999999999999
Q ss_pred HHHhhcccChhHHHHHcCChHHHHHhccC-CC-cchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHH
Q 008486 405 LFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNREN 482 (564)
Q Consensus 405 L~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~ 482 (564)
|.-++ .++.... ++..+-+.|.+ ++ .......+..|+.|+..+.. .......||.|..+|++.-+.+|..
T Consensus 323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99988 2222222 22233333333 22 22345567778887766631 1122368999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHH
Q 008486 483 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 530 (564)
Q Consensus 483 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 530 (564)
++.+|..+. +...... ....++-..++.+++.+..+.+
T Consensus 395 VL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 999998776 2222221 2224445667777777776653
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.85 E-value=0.0073 Score=68.54 Aligned_cols=264 Identities=15% Similarity=0.132 Sum_probs=171.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhh
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 336 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i 336 (564)
..+..+++.+...+......++..|..+....... .....+++..|.+.+.+.... +.|+.++..|+........+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 34555777777655666778888888876543221 111236778888888775433 88999999888544321111
Q ss_pred --hccCChHHHHHHHhcCCHHHHHHHHHHHHhccCC-cchhhHhhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhccc
Q 008486 337 --VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 337 --~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~ 412 (564)
.--+.++.++..+.+....++..|..++..+... +.+.. ...+|.|+..|.+. .=..+..|+.+|..|+...
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1125677788877777778888777776666532 22111 34689999999766 4688999999999999765
Q ss_pred ChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 413 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 413 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.......-..+||.+.+.+.+..+++...|..++..+|..-+++.. ...||.|++.+.+++ ....++..|..-..
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~--~~~~~~~~l~~~tf 240 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPT--EVPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTT--HHHHHHHHHTTCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChh--hhHHHHHHhhcCee
Confidence 3222222357899999999889999999999999988864433311 246899999998664 24444444433222
Q ss_pred CCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 493 GDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 493 ~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
-..-....+ .=.+|.|..=+...+...+++++-++.||++.
T Consensus 241 v~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 241 VAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp CSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred EeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 110000000 01356666666667888999999999999873
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.79 E-value=0.16 Score=47.80 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=152.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH--HhCCHHHHHH-------hhCCCC-----HHHHHHHHHHH
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA--EAGAIPLLVG-------LLSTPD-----SRTQEHAVTAL 323 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~-------lL~~~~-----~~i~~~A~~~L 323 (564)
.+..++..|.. ++.+..|+.+|.+--. +...-..+. ..|.+..|+. .++.+. ..-..+|+..|
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re-~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRE-SVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTT-TCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhh-ccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 45556666654 4457777777765432 222222222 2366666643 333321 12224566666
Q ss_pred HhcccCCccchhhhccCChHHHHHHHhcCC-----HHHHHHHHHHHHhccCCc--chhhHhhhcCChHHHHHhhccCCHH
Q 008486 324 LNLSICEDNKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEGTQR 396 (564)
Q Consensus 324 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~ 396 (564)
--++.+++.|..+.++...--+.-+|+..+ .-+|-.+..+++.|...+ +....+...+++|..++.+..|++-
T Consensus 81 QcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 81 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL 160 (268)
T ss_dssp HHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH
Confidence 677889999999999998888888887663 457888899999988664 3455566789999999999999999
Q ss_pred HHHHHHHHHHHhhcccChhHHHHH--------cCChHHHHHhc-cCCCcchHHHHHHHHHHhcCChhhHHHHHh------
Q 008486 397 GKKDAATALFNLCIYQGNKGKAVR--------AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIGA------ 461 (564)
Q Consensus 397 ~~~~a~~aL~nL~~~~~~~~~i~~--------~g~i~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~~------ 461 (564)
.|.-|...+..+..++.+...+.. ..++..++.-+ ..+++.+.+..+.+-..|++++..+..+..
T Consensus 161 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~L 240 (268)
T 2fv2_A 161 SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL 240 (268)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHh
Confidence 999999999998887776543331 12333344433 558889999999999999999999988764
Q ss_pred -cCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 008486 462 -AEAVPVLVEVIGNGSPRNRENAAAVLVHL 490 (564)
Q Consensus 462 -~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L 490 (564)
.|.... ++ .+++.++..-...+.|+
T Consensus 241 rd~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 241 KDTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp TSSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred hChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 222222 22 24667777666666554
No 161
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.53 E-value=0.049 Score=52.29 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=122.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhC-CHHHHHHhhCCCCHHHHHHHHHHHHhccc---CCccchh
Q 008486 260 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAG-AIPLLVGLLSTPDSRTQEHAVTALLNLSI---CEDNKGS 335 (564)
Q Consensus 260 ~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~---~~~~~~~ 335 (564)
+.+...|.+.++..+..|+..|......+++ ..+...+ +++.+.--+.+.+..+...++.+|..+.. +.+.+-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3566777788999999999998887654443 2222111 22222222336688888888887777632 1111111
Q ss_pred hh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh
Q 008486 336 IV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 414 (564)
Q Consensus 336 i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 414 (564)
-. ..-.+|.|+.-+......+|+.+-.++..+... .....+++.+++-+++.+.+.+..++..+..+......
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 134688888888777888998888888777532 11224677788888888999999999999888654333
Q ss_pred hHHHHHcCCh---HHHHHhccCCCcchHHHHHHHHHHhc
Q 008486 415 KGKAVRAGVV---PTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 415 ~~~i~~~g~i---~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
. ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 24578 99999999999999999999998554
No 162
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.51 E-value=0.058 Score=62.10 Aligned_cols=254 Identities=13% Similarity=0.108 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC------CCCHHHHHHHHHHHHhcccCCccchhhhcc-----CC
Q 008486 273 DQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS------TPDSRTQEHAVTALLNLSICEDNKGSIVSS-----GA 341 (564)
Q Consensus 273 ~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~-----g~ 341 (564)
.+..|...|..++....+ .+. .-+++.+...+. +.+...++.|+.+++.++........-+.. ..
T Consensus 377 ~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 456667777777764331 111 112333334444 456788999999999997532211111110 22
Q ss_pred hHH----HHHHHhcC---CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccC-
Q 008486 342 VPS----IVHVLRIG---SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG- 413 (564)
Q Consensus 342 i~~----Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~- 413 (564)
.+. ++..|.++ .+-+|..|++++..++..- ... .-..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 222 33445666 7899999999999998642 111 122567888888888889999999999999987422
Q ss_pred --------hhHHHH--HcCChHHHHHhccCCC-----cchHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHHh----
Q 008486 414 --------NKGKAV--RAGVVPTLMHLLTEPG-----GGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIG---- 473 (564)
Q Consensus 414 --------~~~~i~--~~g~i~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~---- 473 (564)
.+..+. -..+++.|+.++.... ....+.++.+|..++..- +...-... ..++.|+..+.
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~ 608 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAK 608 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTT
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHh
Confidence 122221 1345666667775531 012345555565543211 11000111 13444444443
Q ss_pred c-CChHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 474 N-GSPRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 474 ~-~~~~~k~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
+ .++..+..+..+|..++.. ++..... ....+++.+..++..........+..++..+...
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 609 NPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 2 2456677778888887765 3322222 2334677777777766555566666666655543
No 163
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.029 Score=54.44 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=121.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCcc---hhhHhhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh----h
Q 008486 345 IVHVLRIGSMEARENAAATLFSLSVIDE---NKVTIGA--SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN----K 415 (564)
Q Consensus 345 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~---~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~----~ 415 (564)
+-+-|.+.++..|..|...|..+..... ....... ....+.+-..+.+.+..+...++.+|..++..... +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5677888999999999988877653321 1111111 24556677788888999999999999887753221 1
Q ss_pred --HHHHHcCChHHHHHh-ccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 416 --GKAVRAGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 416 --~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
....-..+++.|+.- |.+....++..|+.++..++........ ++..++..+.+.+|.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 122334677878764 7777888888888888776543211111 24555666778899999999888877653
Q ss_pred C-CHHH--HHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhhH
Q 008486 493 G-DQQY--LAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 493 ~-~~~~--~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 536 (564)
. +... ....+ ..+++.+..++.+.++.+|..|..++..+..+-
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 2 1111 11111 125567788889999999999999998887654
No 164
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.22 E-value=0.0008 Score=65.91 Aligned_cols=48 Identities=23% Similarity=0.612 Sum_probs=37.9
Q ss_pred CCccCcccccCCCC----CEE----cCCCCcccHHHHHHHHHhCC----------CCCCCCCCCCc
Q 008486 163 DDFRCPISLELMKD----PVI----VSTGQTYERSCIEKWLEAGH----------RTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~d----Pv~----~~cg~t~~r~ci~~~~~~~~----------~~CP~~~~~l~ 210 (564)
..-.|+||...+.+ |-. ..|||.|...|+.+|+.... .+||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44679999988876 422 37999999999999997421 46999999876
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.63 E-value=0.24 Score=46.61 Aligned_cols=100 Identities=22% Similarity=0.206 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCC-----hHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHH
Q 008486 439 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-----PRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVD 512 (564)
Q Consensus 439 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~k~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ 512 (564)
+-.|+..|..++.+++.|..+++++..-.|..+|...+ .-+|-.+.+++..|... +++....+++..++|..+.
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 46678888899999999999999998888999998765 35688899999998864 4567788899999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhHHH
Q 008486 513 LAQNGTDRGKRKAAQLLERMSRFIEQ 538 (564)
Q Consensus 513 Ll~~~~~~~k~~A~~lL~~l~~~~~~ 538 (564)
++..|+.-.|.-|..++.-+-..+.+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~G 178 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTG 178 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999877655543
No 166
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.49 E-value=0.14 Score=50.34 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=146.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH----HHHHh-CCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCc
Q 008486 257 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV----AIAEA-GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 331 (564)
Q Consensus 257 ~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~----~i~~~-g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~ 331 (564)
+.+..|+..|..-+.+.+..+......+.+.....+. .+... .++..|+..-. ++++-..+-..|.....++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHH
Confidence 6778889999999999999999999988876554432 22221 23333333333 44555566666777777777
Q ss_pred cchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc-hhhHhhhc---CChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 332 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 332 ~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
....|...+.+..+.+.+..++=++...|..++..|-..+. -....... .++...-.||.+++--+++.++..|+.
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 66777778888899999999999999999999887754432 11122221 567778889999999999999999999
Q ss_pred hhcccChhHHHH----HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChh
Q 008486 408 LCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 454 (564)
Q Consensus 408 L~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 454 (564)
|..+..|...+. +..-+..++.+|++.+..++-.|..++.....+|.
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999988877554 34578889999999999999999999998887764
No 167
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.48 E-value=0.36 Score=55.48 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHH----HHHhhCCC---CHHHHHHHHHHHHhcccCCccchh
Q 008486 268 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPL----LVGLLSTP---DSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 268 s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~-----g~i~~----Lv~lL~~~---~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
+.+|..+..|+..+..++.+....... ... .+.+. ++..|.++ ++.+|..|+++|+.++..- .++
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 567888889999999997532100000 000 12222 33344555 8899999999999998642 111
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc---------hhhHhhhc--CChHHHHHhhccCC---HH--HHH
Q 008486 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE---------NKVTIGAS--GAIPPLVTLLSEGT---QR--GKK 399 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~---------~~~~i~~~--g~i~~Lv~lL~~~~---~~--~~~ 399 (564)
.-...++.++..|.+.+..++..|+.+|.+++.... .+..+... ..++.|+.++.... +. ...
T Consensus 493 -~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 -QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 124457778888888789999999999999886421 23333221 45566666666541 11 234
Q ss_pred HHHHHHHHhhcccC-hhHHHHHcCChHHHHHhc----cC-CCcchHHHHHHHHHHhcCC--hhhHHHHHhcCChHHHHHH
Q 008486 400 DAATALFNLCIYQG-NKGKAVRAGVVPTLMHLL----TE-PGGGMVDEALAILAILSSH--PEGKAAIGAAEAVPVLVEV 471 (564)
Q Consensus 400 ~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~lL----~~-~~~~~~~~al~~L~~L~~~--~~~~~~i~~~g~i~~Lv~l 471 (564)
.++.+|..++..-. .....+ ..+++.|+..+ .+ .+......++.+|..++.. ++....+. ..++|.+..+
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHH
Confidence 56666665543211 111111 12334444443 22 3445666678888777643 33333333 3467788888
Q ss_pred HhcCChHHHHHHHHHHHHHh
Q 008486 472 IGNGSPRNRENAAAVLVHLC 491 (564)
Q Consensus 472 L~~~~~~~k~~A~~~L~~L~ 491 (564)
|........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 87655555666666555443
No 168
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.38 E-value=0.31 Score=47.79 Aligned_cols=136 Identities=11% Similarity=0.058 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHhhcccChhHHHHH--cCChHHHHHhccCCCcchHHHHHHHHHHhcCChh---hHHHHHhcCChHHH
Q 008486 394 TQRGKKDAATALFNLCIYQGNKGKAVR--AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE---GKAAIGAAEAVPVL 468 (564)
Q Consensus 394 ~~~~~~~a~~aL~nL~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~---~~~~i~~~g~i~~L 468 (564)
.+..+..++++++|+..++..+..+.. ..+++.+...+...+..++..+..++.|++..-. ..... ..++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHH
Confidence 566689999999999999888877664 2355566666656678889899999999985321 01111 1134445
Q ss_pred HHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHH
Q 008486 469 VEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLER 531 (564)
Q Consensus 469 v~lL~~-~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~ 531 (564)
..++.. .+.+....++.+|.+|...++...+.+...|+...+-.+... ...++.+.|..+|..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 555543 467888888999999998877767777777777777777665 467788887777653
No 169
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.01 E-value=1.1 Score=51.49 Aligned_cols=174 Identities=12% Similarity=0.052 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh---c--cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHH
Q 008486 352 GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL---S--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 426 (564)
Q Consensus 352 ~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~ 426 (564)
.++..++.++.++..++..-.... ...++.++.++ . +.++.++..++++|+.++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 467789999999999986532111 13344444433 3 2478999999999999886432211111 134556
Q ss_pred HHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HH-HHH
Q 008486 427 LMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQ-QY-LAE 500 (564)
Q Consensus 427 Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~L~~~~~-~~-~~~ 500 (564)
|+..| + +.++..|+.++.+++.. .+..+.. ...+..|..++..+ +...+..+..++..+...-+ .. ...
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 2 78899999999999942 3333332 24566777777763 46788888888888876421 22 221
Q ss_pred HHH--cCCHHHHHHhhhcC--CHHHHHHHHHHHHHHHhh
Q 008486 501 AKE--LGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 501 ~~~--~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~ 535 (564)
+.. .-++..+..++... ++..+......|..|...
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 111 11333333444333 444556666666666543
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.74 E-value=0.23 Score=48.72 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHH-HHcCChHHHHH
Q 008486 353 SMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA-VRAGVVPTLMH 429 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i-~~~g~i~~Lv~ 429 (564)
.+..+-.+++++.|+.....++..+... .+++.+...+.+.+..++..+++.++|++......... ....++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 5666888999999999888888777653 34445555555567889999999999998742110000 01113444455
Q ss_pred hccC-CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-HHhc-CChHHHHHHHHHH
Q 008486 430 LLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVE-VIGN-GSPRNRENAAAVL 487 (564)
Q Consensus 430 lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~-~~~~~k~~A~~~L 487 (564)
++.. .+.+....++-+|++|...+.....+.+.-.+...+. +... ..+++.+.|-.+|
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 5543 6778899999999999876655555554433333333 3333 2455666554443
No 171
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.65 E-value=0.055 Score=51.43 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=96.0
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008486 288 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSL 367 (564)
Q Consensus 288 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L 367 (564)
++..|...+..=....|..++.++++.++..++..| . .+.+..++++.++.+|..++..+
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~~l--- 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVADRL--- 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHHHS---
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHHhC---
Confidence 455565555543455667788888999998888532 1 13466667777888888777632
Q ss_pred cCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHH
Q 008486 368 SVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILA 447 (564)
Q Consensus 368 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~ 447 (564)
. .+.|..++.+++..++..++..+ . .+.+..++.++++.|+..++..+.
T Consensus 123 ~--------------~~~L~~L~~D~d~~VR~~aA~~l---~--------------~~~l~~l~~D~d~~VR~~aa~~l~ 171 (244)
T 1lrv_A 123 P--------------LEQLEQMAADRDYLVRAYVVQRI---P--------------PGRLFRFMRDEDRQVRKLVAKRLP 171 (244)
T ss_dssp C--------------TGGGGGGTTCSSHHHHHHHHHHS---C--------------GGGGGGTTTCSCHHHHHHHHHHSC
T ss_pred C--------------HHHHHHHHcCCCHHHHHHHHHhc---C--------------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 1 12344555666677776666521 1 112223334444444444443211
Q ss_pred -----HhcCCh--hhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHH
Q 008486 448 -----ILSSHP--EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 520 (564)
Q Consensus 448 -----~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~ 520 (564)
.+...+ ..|..++..-..+.|..++.+.+..+|..++..+. .+.|..| .+.+..
T Consensus 172 ~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~ 232 (244)
T 1lrv_A 172 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPE 232 (244)
T ss_dssp GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHH
Confidence 111111 11222222223456666677777777777766531 3566666 888899
Q ss_pred HHHHHHHHH
Q 008486 521 GKRKAAQLL 529 (564)
Q Consensus 521 ~k~~A~~lL 529 (564)
++..|...|
T Consensus 233 VR~aa~~~L 241 (244)
T 1lrv_A 233 VRLAIAGRL 241 (244)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHh
Confidence 988886543
No 172
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.60 E-value=0.013 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCccCccccc-CCCCCEE--cCCCCcccHHHHHHHH
Q 008486 163 DDFRCPISLE-LMKDPVI--VSTGQTYERSCIEKWL 195 (564)
Q Consensus 163 ~~f~Cpic~~-lm~dPv~--~~cg~t~~r~ci~~~~ 195 (564)
++..|++|.+ ...+||. +.|+|+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4688999996 4789998 8999999999999844
No 173
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.033 Score=55.47 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=51.4
Q ss_pred CccCcccccCCCCCEE-cCCCCc--ccHHHHHHHHH-hCCCCCCCCCCCCcCCCCCchHHHHHHHHH
Q 008486 164 DFRCPISLELMKDPVI-VSTGQT--YERSCIEKWLE-AGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 226 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~-~~cg~t--~~r~ci~~~~~-~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 226 (564)
.+.||++...|..|+. ..|.|. |+...+..... .+...||.|.+.+...++..+..+...+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 4999999999999997 589997 77666655543 467899999999999999998888776654
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.39 E-value=1 Score=51.56 Aligned_cols=214 Identities=16% Similarity=0.019 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHH---h--cCCHHHHHHHHHHHHhccCCc-chhhHhhhcCChH
Q 008486 311 PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL---R--IGSMEARENAAATLFSLSVID-ENKVTIGASGAIP 384 (564)
Q Consensus 311 ~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~ 384 (564)
.+...++.|+.++..++....... ...++.++.++ . ...+.++..+++++..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788999999999875322111 23445555544 2 237889999999999987542 111111 13556
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCC--CcchHHHHHHHHHHhcCC--hhhHHHHH
Q 008486 385 PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP--GGGMVDEALAILAILSSH--PEGKAAIG 460 (564)
Q Consensus 385 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~~L~~L~~~--~~~~~~i~ 460 (564)
.|+..| + +.++..|+.++.+++........-.-..++..+..++..+ +...+..++.+++.++.. ++......
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666 3 6789999999999995433221112245667777777663 456777778888877542 23333322
Q ss_pred hcCChHHHHHH----HhcC--ChHHHHHHHHHHHHHhcC-----C-----------HHHHHHHHHcCCHHHHHHhhhcC-
Q 008486 461 AAEAVPVLVEV----IGNG--SPRNRENAAAVLVHLCAG-----D-----------QQYLAEAKELGVMGPLVDLAQNG- 517 (564)
Q Consensus 461 ~~g~i~~Lv~l----L~~~--~~~~k~~A~~~L~~L~~~-----~-----------~~~~~~~~~~g~i~~L~~Ll~~~- 517 (564)
. ..++.++.. +... ++..+......|..|+.. . +..... ....+++.+..++...
T Consensus 627 ~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~ 704 (971)
T 2x1g_F 627 D-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWV 704 (971)
T ss_dssp H-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhcc
Confidence 2 233444433 3332 333444444444444321 1 001111 1234777777777543
Q ss_pred -CHHHHHHHHHHHHHHHhh
Q 008486 518 -TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 518 -~~~~k~~A~~lL~~l~~~ 535 (564)
++.+.+.+.++++.+...
T Consensus 705 ~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 678999999999887654
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.35 E-value=1.1 Score=42.00 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=104.5
Q ss_pred HHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC----C-------CHHHHHHHHHHHHhcccC
Q 008486 262 LLCKLTSGS-PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST----P-------DSRTQEHAVTALLNLSIC 329 (564)
Q Consensus 262 Lv~~L~s~~-~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~-------~~~i~~~A~~~L~nLs~~ 329 (564)
.++.|+++. .+.-.+.+..|+..-..++.....-...+|+..|+.+|.. + +...+...+.+|..+...
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 455555432 2222334555554434444332222246788888887742 1 356778888999888776
Q ss_pred Cccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--h-hhHh----------hhcCChHHHHHhhcc-CC
Q 008486 330 EDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTI----------GASGAIPPLVTLLSE-GT 394 (564)
Q Consensus 330 ~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~ 394 (564)
..+...++ ..+++..|+..|.+.++.++..++.+|..++..+. + ...+ .+..-+.++++.+++ .+
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~ 164 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 164 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSC
T ss_pred hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCCh
Confidence 66656555 57789999999998899999999988888876653 3 3332 223577788888874 45
Q ss_pred HHHHHHHHHHHHHhhcccCh-------hHHHHHcCChHHHHHh
Q 008486 395 QRGKKDAATALFNLCIYQGN-------KGKAVRAGVVPTLMHL 430 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~-------~~~i~~~g~i~~Lv~l 430 (564)
.+.+..++..+-.+...+++ |..+...|+.+.+-.+
T Consensus 165 ~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 165 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 56666666666556665553 2234455655544433
No 176
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.33 E-value=1.5 Score=45.15 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=95.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhc
Q 008486 259 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 259 i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
...++... .++...+.-|+..|....+..|+.... ++..++.|..++|..+|..|+..|-.+|.+ ++...+
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-- 101 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-- 101 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH--
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH--
Confidence 44444433 467889999999999999888875543 568899999999999999999999999988 554444
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 008486 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 407 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 407 (564)
++.|+++|.+.++.-....-.+|..|-..+ ..+.+..|...+.++++.+++.++..|..
T Consensus 102 ---aDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 ---ADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ---HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 678899999887554444445554443222 12556777777777888888888887754
No 177
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.93 E-value=0.025 Score=53.81 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhcCCHHHHHHHHH
Q 008486 302 PLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAA 362 (564)
Q Consensus 302 ~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~ 362 (564)
+.|..++++++..++..++.. +. .+.+..+++.+++++|..++.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 567788888899999887763 21 122444456667777776665
No 178
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.73 E-value=0.058 Score=53.59 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCccCcccccCCCCCEE-cCCCCc--ccHHHHHHHHH-hCCCCCCCCCCCCcCCCCCchHHHHHHHHH
Q 008486 163 DDFRCPISLELMKDPVI-VSTGQT--YERSCIEKWLE-AGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 226 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv~-~~cg~t--~~r~ci~~~~~-~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 226 (564)
-.+.||++...|..|+. ..|.|. |+...+..... .+...||.|++.+...++..+..+...+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 35899999999999997 589997 77776666554 467899999999998899988888777654
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.71 E-value=2.1 Score=43.40 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=112.6
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhH-HHHHHhCCHHHHHHhhCC-----------CCHHHHHHHHHHHHhc
Q 008486 260 EILLCKLTSGS-PEDQRSAAGEIRLLAKRNADNR-VAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNL 326 (564)
Q Consensus 260 ~~Lv~~L~s~~-~~~~~~al~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~-----------~~~~i~~~A~~~L~nL 326 (564)
...++.|.++. .+...+.+..|+..-..++-.. ..++ .+|+..|+.+|.. .+...+...+.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45566666543 2333445666665444444332 3344 6778888888741 2457788899999998
Q ss_pred ccCCccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--h-hhHh----------hhcCChHHHHHhhcc
Q 008486 327 SICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTI----------GASGAIPPLVTLLSE 392 (564)
Q Consensus 327 s~~~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~ 392 (564)
..+..+...++ ...++..|+..|.+..+.++..+..+|..++..+. + ...+ .+..-+..++..|++
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 87766666555 67889999999999999999999999988887653 2 3322 233678889999987
Q ss_pred -CCHHHHHHHHHHHHHhhcccCh-------hHHHHHcCChHHHHHhccC
Q 008486 393 -GTQRGKKDAATALFNLCIYQGN-------KGKAVRAGVVPTLMHLLTE 433 (564)
Q Consensus 393 -~~~~~~~~a~~aL~nL~~~~~~-------~~~i~~~g~i~~Lv~lL~~ 433 (564)
.+.+.+..++..+-.+....+. +..+...|+.+.+-. |..
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 4667766666666666665543 223445666665554 554
No 180
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.42 E-value=2.6 Score=48.06 Aligned_cols=214 Identities=12% Similarity=0.117 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHH---hcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHH
Q 008486 309 STPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL---RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPP 385 (564)
Q Consensus 309 ~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL---~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~ 385 (564)
.+.+...++.++.+++.++..-... ....++.++..+ ..+++.++..+++++..++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 4567788999999999997643211 123455555555 2346889999999999987542111111 2378888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcccChhHHHH--HcCChHHHHHhccC--CCcchHHHHHHHHHHhcCCh--hhHHHH
Q 008486 386 LVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTE--PGGGMVDEALAILAILSSHP--EGKAAI 459 (564)
Q Consensus 386 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~--~~g~i~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~--~~~~~i 459 (564)
|+..|.+ +.++..|+.+|.+++..... .+. -..++..|..++.. -+...+..++.+++.++..- +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~~--~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECKY--DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTGG--GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999964221 111 12345555566654 24567777888888776432 333333
Q ss_pred HhcCChHHHHHHHh----cC-ChHHHHHHHHH---HHHHhcC----CH------------------HHHHHHHHcCCHHH
Q 008486 460 GAAEAVPVLVEVIG----NG-SPRNRENAAAV---LVHLCAG----DQ------------------QYLAEAKELGVMGP 509 (564)
Q Consensus 460 ~~~g~i~~Lv~lL~----~~-~~~~k~~A~~~---L~~L~~~----~~------------------~~~~~~~~~g~i~~ 509 (564)
++ ..++.+...+. .. ++..+...... |..+... .+ ..... ....+++.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 687 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHHH
Confidence 32 24445544443 22 45554433333 3332211 00 00111 12235556
Q ss_pred HHHhhhc--CCHHHHHHHHHHHHHHH
Q 008486 510 LVDLAQN--GTDRGKRKAAQLLERMS 533 (564)
Q Consensus 510 L~~Ll~~--~~~~~k~~A~~lL~~l~ 533 (564)
+..++.. .+..+.+.+..+++.+.
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHH
Confidence 6565543 36778888888777764
No 181
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.34 E-value=0.6 Score=44.70 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=115.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhc--CChHHHHHhhccCCHHHHHHHHHHHHHhhcc---cChhHH
Q 008486 343 PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIY---QGNKGK 417 (564)
Q Consensus 343 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---~~~~~~ 417 (564)
+.+...|-+.+..-+..++..|...... +...+... ..++.+.-.+.+.+..+...++.+|..+... .+.+..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3455555566666666666655543211 11111111 1233333333466788877777777765421 111111
Q ss_pred HH-HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 008486 418 AV-RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ 496 (564)
Q Consensus 418 i~-~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~ 496 (564)
-. ..-++|.|+.-+.+....+++.+-.+|..++..- --..+.+.+++-+++.+.+.|+.++..|..+-...+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 1347899999998888889998888887665311 0112566677778888999999999888887542211
Q ss_pred HHHHHHHcCCH---HHHHHhhhcCCHHHHHHHHHHHHHHHhhH-HHHHHHhh
Q 008486 497 YLAEAKELGVM---GPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQV 544 (564)
Q Consensus 497 ~~~~~~~~g~i---~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~-~~~~~~~~ 544 (564)
. ....+ +.+..++.+.+..+|..|..++..+.... +.-.+.+|
T Consensus 201 ~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 201 S-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp G-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred C-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 1 23467 99999999999999999999887666543 34444444
No 182
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.81 E-value=0.079 Score=50.05 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=38.0
Q ss_pred CccCcccccCCCCCEEc-CCCCcccHHHHHHHHHh-CCCCCCCCCCCCcCC
Q 008486 164 DFRCPISLELMKDPVIV-STGQTYERSCIEKWLEA-GHRTCPKTQQTLTST 212 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~-~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~~~ 212 (564)
-..|.+|.++...-+.- .|++.|...|+.+|++. ++..||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45799999877644433 49999999999999974 356899999876643
No 183
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.52 E-value=5.3 Score=39.18 Aligned_cols=172 Identities=17% Similarity=0.057 Sum_probs=128.8
Q ss_pred HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccCh----hHHHHHc--CChHHHHHhccCCCcchHHHHHHHHHHh
Q 008486 376 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN----KGKAVRA--GVVPTLMHLLTEPGGGMVDEALAILAIL 449 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~----~~~i~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~~L 449 (564)
.+...+.+..|+..|..=+-+.++++..+..++.....+ ....+.. .++..|+.-- .++++.-.+-.+|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHH
Confidence 345568888999999888999999999999998775432 1122222 2333333332 4667777888888888
Q ss_pred cCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHhhhcCCHHHHHHHH
Q 008486 450 SSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG---VMGPLVDLAQNGTDRGKRKAA 526 (564)
Q Consensus 450 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~Ll~~~~~~~k~~A~ 526 (564)
..++.....+...+.+-.+.+++..++-++-..|..++..|-......+...+..+ +....-.|+.+++.-+|+.+.
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 89988888888888899999999999999999999999888776666665665544 578888999999999999999
Q ss_pred HHHHHHHh---hHHHHHHHhhchhhH
Q 008486 527 QLLERMSR---FIEQQKQAQVQTESQ 549 (564)
Q Consensus 527 ~lL~~l~~---~~~~~~~~~~~~~~~ 549 (564)
.+|..|-- ......+.+++.+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nL 256 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENL 256 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHH
Confidence 99977652 445566666665554
No 184
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.34 E-value=3.9 Score=41.41 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=109.3
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-----------CCHHHHHHHHHHHHhcc
Q 008486 260 EILLCKLTSGSP-EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNLS 327 (564)
Q Consensus 260 ~~Lv~~L~s~~~-~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~i~~~A~~~L~nLs 327 (564)
...|+.|.++.. ..-.+.+..|+..-..++.....-...+|+..|+.+|.. .+...+...+.+|..+.
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 345666665432 212234555555444444332221236778888887742 14567888899999887
Q ss_pred cCCccchhhh-ccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcc--h-hhHh----------hhcCChHHHHHhhcc-
Q 008486 328 ICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTI----------GASGAIPPLVTLLSE- 392 (564)
Q Consensus 328 ~~~~~~~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~- 392 (564)
....+...++ ..+++..|+..|.+.++.++..++.+|..++..+. + ...+ .+..-+..|+..+.+
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 7666655555 57789999999988899999999988888877653 3 3322 223577788888874
Q ss_pred CCHHHHHHHHHHHHHhhcccCh-------hHHHHHcCChHHHHHhccC-CCcch
Q 008486 393 GTQRGKKDAATALFNLCIYQGN-------KGKAVRAGVVPTLMHLLTE-PGGGM 438 (564)
Q Consensus 393 ~~~~~~~~a~~aL~nL~~~~~~-------~~~i~~~g~i~~Lv~lL~~-~~~~~ 438 (564)
.+.+.+..++..+-.|....++ |..+...|+.+.+ .-|.. .++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhH
Confidence 4566666666666666665553 2244556655555 44444 44433
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.26 E-value=2.4 Score=48.32 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=106.0
Q ss_pred hcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh---ccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHH
Q 008486 350 RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL---SEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 426 (564)
Q Consensus 350 ~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~ 426 (564)
.+.++..++.++.++..++..-... ....++.++..+ .++++.++..++++|+.++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3457888999999999998653210 123344455444 23468899999999998886422222333 378888
Q ss_pred HHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HHHHHH
Q 008486 427 LMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQ-QYLAEA 501 (564)
Q Consensus 427 Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~k~~A~~~L~~L~~~~~-~~~~~~ 501 (564)
|+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++..+ +...+..+..++..+...-+ ......
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999842 2222221 12344555566643 46788888888888875432 333332
Q ss_pred HHcCCHHHHHHhh----hcC-CHHHHHHHHHHHHHHH
Q 008486 502 KELGVMGPLVDLA----QNG-TDRGKRKAAQLLERMS 533 (564)
Q Consensus 502 ~~~g~i~~L~~Ll----~~~-~~~~k~~A~~lL~~l~ 533 (564)
++ .+++++...+ .+. ++..+.....++..|.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 22 2444444433 232 5666665555555554
No 186
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.38 E-value=1.3 Score=46.51 Aligned_cols=185 Identities=17% Similarity=0.124 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhh-ccCChHHHHHHHh
Q 008486 272 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLR 350 (564)
Q Consensus 272 ~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~ 350 (564)
-++..|++.|..+ ..-+.. ..++..++..+..+..+++..++-.|..+ ++.+. -.++++.++.-|.
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcC
Confidence 4678888888887 543332 34566666666778899999999888888 12221 2566778888888
Q ss_pred cCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCC--HHHHHHHHHHHHHhhcccChhHHHHHcCChHHHH
Q 008486 351 IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLM 428 (564)
Q Consensus 351 ~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv 428 (564)
+.+.+++..||.+|.-++ .+.... ..+..|-+.|.+-+ .......+..|..|+..+.+. ......||.|.
T Consensus 310 D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~ 381 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIF 381 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTG
T ss_pred CcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHH
Confidence 889999999999999998 111111 22333334443321 122334455566666555321 11237899999
Q ss_pred HhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-HHhcCChHHHHHHHHHH
Q 008486 429 HLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVE-VIGNGSPRNRENAAAVL 487 (564)
Q Consensus 429 ~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~k~~A~~~L 487 (564)
++|.++-..|+..++.+|..+.. ...+..+.+ +|-..+++++..+..+-
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999987771 112333333 33445566666555443
No 187
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.68 E-value=2.2 Score=39.85 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCCcchHHHHHHHHHHhcCChh--h-HHHHHh---------
Q 008486 395 QRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE--G-KAAIGA--------- 461 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~-~~~i~~--------- 461 (564)
......++.+|..+..+..+...++. .+++..|+..|.++++.++..++.+|..+|..++ | ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45567888999999888877777774 5689999999988899999999999998887654 5 444432
Q ss_pred -cCChHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHhhhcCCHHHHH
Q 008486 462 -AEAVPVLVEVIGNG-SPRNRENAAAVLVHLCAGDQ------QYLAEAKELGVMGPLVDLAQNGTDRGKR 523 (564)
Q Consensus 462 -~g~i~~Lv~lL~~~-~~~~k~~A~~~L~~L~~~~~------~~~~~~~~~g~i~~L~~Ll~~~~~~~k~ 523 (564)
..-...+++.|+.. +...+..+...+-.+....+ .-+..+...|+.+.|-.+-..+++....
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 23456677777643 34555555555544554433 2345556778777777666555555433
No 188
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.47 E-value=3.2 Score=41.94 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=97.0
Q ss_pred cCChHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCCcchHHHHHHHHH
Q 008486 380 SGAIPPLVTLLSE-----------GTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILA 447 (564)
Q Consensus 380 ~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~ 447 (564)
.+++..|+..|.. .+......++.+|..+..+..+...++. ...|..|+..|.+..+.++..++.+|+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3456666666531 2346677889999999888877777774 578999999999899999999999999
Q ss_pred HhcCChh--h-HHHHHh----------cCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCH
Q 008486 448 ILSSHPE--G-KAAIGA----------AEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ------QYLAEAKELGVM 507 (564)
Q Consensus 448 ~L~~~~~--~-~~~i~~----------~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~~------~~~~~~~~~g~i 507 (564)
.+|..++ + ...+++ ..-...++..|+. .+...+..+...+-.+....+ .-+..+...|+.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9987654 3 444432 2346778888876 345666666655555655433 234555678888
Q ss_pred HHHHHhhhcCCHHHH
Q 008486 508 GPLVDLAQNGTDRGK 522 (564)
Q Consensus 508 ~~L~~Ll~~~~~~~k 522 (564)
+.+..+-..+++.+.
T Consensus 268 ~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 268 QVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHTTSCCHHHH
T ss_pred HHHHHHhcCCChhHH
Confidence 877775544455443
No 189
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.92 E-value=18 Score=41.44 Aligned_cols=286 Identities=10% Similarity=0.045 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccC---CHHHHHHHHHHHHHHHhhChhh--
Q 008486 217 NYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSG---SPEDQRSAAGEIRLLAKRNADN-- 291 (564)
Q Consensus 217 n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~---~~~~~~~al~~L~~L~~~~~~~-- 291 (564)
+...|....+|...-.- ..+........|..+ +.+++.-|+..|.+..+.-+..
T Consensus 21 d~~~r~~A~~~L~~~q~---------------------sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS---------------------SSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp CHHHHHHHHHHHHHHHH---------------------STTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred CHHHHHHHHHHHHHHHc---------------------ChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 46677778888776322 014566677777653 6889999999998876532222
Q ss_pred --HHHHHHhCCHHHHHHhhC-CCCHHHHHHHHHHHHhcccCC--ccchhhhccCChHHHHHHHhcCCH-HHHHHHHHHHH
Q 008486 292 --RVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICE--DNKGSIVSSGAVPSIVHVLRIGSM-EARENAAATLF 365 (564)
Q Consensus 292 --r~~i~~~g~i~~Lv~lL~-~~~~~i~~~A~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~ 365 (564)
....+...++..+...-. .....++.....+|..+.... .. ..+.++.++.++.+++. ........+|.
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 223333334444444111 235668888888888886532 22 34567888888876543 34444555555
Q ss_pred hccCC----c--c-----h-----hhHhhhc---CChHHHHHhhcc----CCHHHHHHHHHHHHHhhcccChhHHHHHcC
Q 008486 366 SLSVI----D--E-----N-----KVTIGAS---GAIPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRAG 422 (564)
Q Consensus 366 ~Ls~~----~--~-----~-----~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g 422 (564)
.|+.. . . . +..+.+. .+++....+|.. .++.+...++.+|......-+. ..+++.+
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ 233 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEP 233 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHH
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhhcch
Confidence 33321 0 0 0 1222221 123444444433 6778888899999887765332 3456678
Q ss_pred ChHHHHHhccCCCcchHHHHHHHHHHhcC---ChhhHHHHHhcCChHHHHHHHh-----cCChHHHHHHHHHHHHHhc--
Q 008486 423 VVPTLMHLLTEPGGGMVDEALAILAILSS---HPEGKAAIGAAEAVPVLVEVIG-----NGSPRNRENAAAVLVHLCA-- 492 (564)
Q Consensus 423 ~i~~Lv~lL~~~~~~~~~~al~~L~~L~~---~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~k~~A~~~L~~L~~-- 492 (564)
.++.+..+|.+ +.++..|+.+|..+.. .++.+..++.. + .|.+.+. ..+.+..+.-+.++..++.
T Consensus 234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l 308 (980)
T 3ibv_A 234 CMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVEL 308 (980)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 88888888864 7889999999997753 34444444432 1 2222222 3455555444444433322
Q ss_pred ----CC-----HHHHHHH--HHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 008486 493 ----GD-----QQYLAEA--KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 534 (564)
Q Consensus 493 ----~~-----~~~~~~~--~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 534 (564)
.. ++..... .-.++++.++....++++.+-..+...+..+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 309 VAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp HHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 11 1111111 112578888888888888776666655554443
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.54 E-value=2.3 Score=48.95 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHhccCCcc-hhhHhhhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcccChhHHHHHcCChH
Q 008486 352 GSMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSE-----GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVP 425 (564)
Q Consensus 352 ~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~ 425 (564)
.++..++.+++++..++.... ....-.-..+++.|+.++.. ....++..++++|+..+..-........ .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 479999999999999997643 22222223577888888864 2234556777888877664333333322 4555
Q ss_pred HHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh------cCChHHHHH----HHhcCChHHHHHHHHHHHHHhcCC
Q 008486 426 TLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA------AEAVPVLVE----VIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 426 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~------~g~i~~Lv~----lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
.|+..|.++++.++..|+.+|.+||.. ++..+.. ...++.++. .+..-++.....+..++..+...-
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 666667666788999999999999963 3333432 112333333 333345666777778888776643
No 191
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.65 E-value=18 Score=41.62 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHhccCCcchh-hHhhhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHhhcccChhHHHHHcCChH
Q 008486 352 GSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSE-----GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVP 425 (564)
Q Consensus 352 ~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~ 425 (564)
.++..++.++.++..++..-... ..-.-..+++.|+.+... +.+.++..++++++..+..-......+. .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 47889999999999998542211 111011233444443321 1233444678888877654222223332 4677
Q ss_pred HHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHh----------cCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 008486 426 TLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA----------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 492 (564)
Q Consensus 426 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~----------~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~ 492 (564)
.++..|.++++.++..|+.+|.+++... +..+.. ...+..+..++..-+.........++..+..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888888788999999999999999742 333320 1123334444444445555555666666544
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.69 E-value=0.98 Score=34.70 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=37.1
Q ss_pred CCccCcccccCCC-----CCEEc--CCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMK-----DPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~-----dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
..-.|.||.+-.- +|.+. .|+...||.|++-=.++|+..||.|..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3458999987431 34332 578899999999888899999999988775
No 193
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.59 E-value=17 Score=41.64 Aligned_cols=216 Identities=12% Similarity=0.040 Sum_probs=128.5
Q ss_pred HHHHHHH-HHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC---CHHHHHHHHHHHHhccc--CC
Q 008486 258 KIEILLC-KLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP---DSRTQEHAVTALLNLSI--CE 330 (564)
Q Consensus 258 ~i~~Lv~-~L~s-~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~i~~~A~~~L~nLs~--~~ 330 (564)
.+...++ .+.. .+++.|.+|-..|..+-+ +++ +......+|..+ +..+|..|+.+|.+... .+
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3444553 3332 368889899888888764 444 344556667553 68899999988887643 22
Q ss_pred c----cchhhhccCChHHHHHHHhc-----CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCH-HHHHH
Q 008486 331 D----NKGSIVSSGAVPSIVHVLRI-----GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ-RGKKD 400 (564)
Q Consensus 331 ~----~~~~i~~~g~i~~Lv~lL~~-----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~ 400 (564)
+ .+.. .-..++.++.+ +..-++...+.++..+....... .-.+.++.|+.++..++. .....
T Consensus 77 e~~~~~~~~-----lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~ 148 (980)
T 3ibv_A 77 ESNLLELQM-----IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNF 148 (980)
T ss_dssp TTSHHHHHH-----HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred hhhHHHHHH-----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHH
Confidence 2 2222 22334444432 24567777887877776432100 123677888888876543 34455
Q ss_pred HHHHHHHhhcc----c---C----hh-----HHHHHc---CChHHHHHhcc----CCCcchHHHHHHHHHHhcCChhhHH
Q 008486 401 AATALFNLCIY----Q---G----NK-----GKAVRA---GVVPTLMHLLT----EPGGGMVDEALAILAILSSHPEGKA 457 (564)
Q Consensus 401 a~~aL~nL~~~----~---~----~~-----~~i~~~---g~i~~Lv~lL~----~~~~~~~~~al~~L~~L~~~~~~~~ 457 (564)
.+++|..|+.. . + .| ..+.+. .+++....+|. ..++.++..++.+|.......+ ..
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~ 227 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-IN 227 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HH
Confidence 56666644322 0 0 11 112211 11333444442 3567788899999998877543 33
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008486 458 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 458 ~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
.+++.+.++.+..+|.. +..+..|+.+|..+....
T Consensus 228 ~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 228 LIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred hhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 45556778888888864 889999999999987654
No 194
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.56 E-value=3.8 Score=42.18 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 008486 392 EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEV 471 (564)
Q Consensus 392 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~l 471 (564)
.++...++.|+..|.....+-+... ..++..++.++.+.+..++..|+..|..+|.. +... .++..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHHH
Confidence 4578899999999988776655432 25677889999988999999999999999987 4332 246688999
Q ss_pred HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHH
Q 008486 472 IGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLL 529 (564)
Q Consensus 472 L~~~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 529 (564)
|.+.++......-.+|..|...++.. .+..|..-+.++++.+|+++...|
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHH
Confidence 99888877777777777777766533 344455555556777777766655
No 195
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.24 E-value=5.6 Score=40.19 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhhcccChhHHHHH-cCChHHHHHhccCCCcchHHHHHHHHHHhcCChh--h-HHHHHh---------
Q 008486 395 QRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE--G-KAAIGA--------- 461 (564)
Q Consensus 395 ~~~~~~a~~aL~nL~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~-~~~i~~--------- 461 (564)
......++.+|..|..+..+...++. .+++..|+..|.++++.++..++.+|..+|..++ | ...+.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 45567888999999888877777664 5789999999988888999999999998887654 5 433322
Q ss_pred -cCChHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHhhhcCCHHHHHH
Q 008486 462 -AEAVPVLVEVIGNG-SPRNRENAAAVLVHLCAGDQ------QYLAEAKELGVMGPLVDLAQNGTDRGKRK 524 (564)
Q Consensus 462 -~g~i~~Lv~lL~~~-~~~~k~~A~~~L~~L~~~~~------~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~ 524 (564)
..-...+++.|..+ +...+..+...+-.|....+ .-+..+...|+.+.|-.+-..+++.+...
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 23466788888743 45566655555555555443 23456667888888777766666655444
No 196
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.35 E-value=21 Score=41.20 Aligned_cols=236 Identities=14% Similarity=0.070 Sum_probs=123.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH----HHhC---CHHHHHHhhCCCCHHHHHHHHHHHHhcccC-
Q 008486 258 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAI----AEAG---AIPLLVGLLSTPDSRTQEHAVTALLNLSIC- 329 (564)
Q Consensus 258 ~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i----~~~g---~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~- 329 (564)
..-.|++.|..-+.+.-......+. ..+..|.++ ...| .+..+..++.++.....+ |+.+|..+...
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC
Confidence 4455666666655544443333332 233344444 3345 345556666665433333 33333322111
Q ss_pred CccchhhhccCChHHHHHHHhcC----CHHHHHHHHHHHHhccC----CcchhhHhhhcCChHHHHHhh----ccCCHHH
Q 008486 330 EDNKGSIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLL----SEGTQRG 397 (564)
Q Consensus 330 ~~~~~~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~ 397 (564)
..+ ...+..+..+++++ ++.++..+.-++..|.. .... .....++.+.+.+ ..++..-
T Consensus 387 ~Pt------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~ 456 (1056)
T 1lsh_A 387 QAT------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEE 456 (1056)
T ss_dssp CCC------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHH
T ss_pred CCC------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHH
Confidence 112 22356666777653 56677777766666642 2111 1112345555444 5567777
Q ss_pred HHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC-----C--CcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 008486 398 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----P--GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVE 470 (564)
Q Consensus 398 ~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~-----~--~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 470 (564)
+..++.+|+|+-.. ..++.|.+++.. . ...++..|+.+|..++..... .+-+.++.
T Consensus 457 ~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~ 519 (1056)
T 1lsh_A 457 IVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLP 519 (1056)
T ss_dssp HHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHH
T ss_pred HHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHH
Confidence 88899999999753 356677777642 1 235677899998888743210 13445677
Q ss_pred HHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhh
Q 008486 471 VIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 471 lL~~--~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~ 535 (564)
+..+ .++++|..|+.+|.. |.-+... +..+...+.. .+..+.......|+++.+.
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~-t~P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFE-SKPSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHH-TCCCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HhcCCCCChHHHHHHHHHHHH-HCcCHHH---------HHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 7743 457888888877753 2223222 2233333333 3455555555555555543
No 197
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=86.13 E-value=16 Score=36.04 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=96.0
Q ss_pred HHHhhcccChh-HHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHh-cCChHHHHH
Q 008486 405 LFNLCIYQGNK-GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNREN 482 (564)
Q Consensus 405 L~nL~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~k~~ 482 (564)
|.||..++.+. .-+++..+|..+...+..++.++....+..|..+++...-...=. ...+|.++..+. .+++++.-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 44566666654 468899999999999999999999999999998876543211111 146788888876 466888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-------CHHHHHHHHHHHHHHH
Q 008486 483 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-------TDRGKRKAAQLLERMS 533 (564)
Q Consensus 483 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~-------~~~~k~~A~~lL~~l~ 533 (564)
..+.|.|...+.....+.++..|+++.|...+... +..-|+.|++++.+.-
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 89999999999988888899999999999987543 2333555777776644
No 198
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=85.45 E-value=6.7 Score=45.27 Aligned_cols=185 Identities=9% Similarity=0.058 Sum_probs=98.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHhccc----CCccchhhhccCChHHHHHHHh----cC------------------
Q 008486 299 GAIPLLVGLLSTPDSRTQEHAVTALLNLSI----CEDNKGSIVSSGAVPSIVHVLR----IG------------------ 352 (564)
Q Consensus 299 g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL~----~~------------------ 352 (564)
.+++.++.+...++.++...++..+..++. .+..+..+ .+.++.|+..+- -+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~--~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIY--EEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGG--HHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 356666666666777887778777766654 22222221 123333333321 00
Q ss_pred -C---HHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHH----hhcc--CCHHHHHHHHHHHHHhhcccChh-HHHHHc
Q 008486 353 -S---MEARENAAATLFSLSVIDENKVTIGASGAIPPLVT----LLSE--GTQRGKKDAATALFNLCIYQGNK-GKAVRA 421 (564)
Q Consensus 353 -~---~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~----lL~~--~~~~~~~~a~~aL~nL~~~~~~~-~~i~~~ 421 (564)
+ ...+..+..+|..++.... ..+++.+.. .+.. .+-+.++.++.+++.++..-... ..-.-.
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~~-------~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLNV-------IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 0 0223345556666652211 112333333 3332 35677889999999887543222 111112
Q ss_pred CChHHHHHhccC-----CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 008486 422 GVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 422 g~i~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
.+++.|+.+... +.+.++..++++++..+..-........ .+++.++..|.+.++.++..|+.++.++|..
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344445543321 1223343577777766543111112222 3577788888877899999999999999974
No 199
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.54 E-value=2.9 Score=48.09 Aligned_cols=99 Identities=8% Similarity=0.070 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhhcccChh-HHHHHcCChHHHHHhccC-----CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 008486 394 TQRGKKDAATALFNLCIYQGNK-GKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPV 467 (564)
Q Consensus 394 ~~~~~~~a~~aL~nL~~~~~~~-~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~ 467 (564)
+=..++.++++++.++...... ..-.-..+++.|+.++.+ ....++..++++++..+..-........ .++..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence 5677899999999998765542 222233567778887753 2223444566777755543211112222 24566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcC
Q 008486 468 LVEVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 468 Lv~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
|++.|...++.++..|+.++.+||..
T Consensus 545 L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 545 LFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 66666666789999999999999973
No 200
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.74 E-value=19 Score=41.46 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=99.7
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHHhccc----CCccchhhhccCChHHHHHH----HhcCCHHHHHHHHHHHHhc
Q 008486 300 AIPLLVGLLST----PDSRTQEHAVTALLNLSI----CEDNKGSIVSSGAVPSIVHV----LRIGSMEARENAAATLFSL 367 (564)
Q Consensus 300 ~i~~Lv~lL~~----~~~~i~~~A~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~l----L~~~~~e~~~~a~~~L~~L 367 (564)
.+..+..++.+ .++.++..++-++++|.. +... .....++.+.+. +.+++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34555566665 356677777777777643 2111 112234555544 4566777778888899888
Q ss_pred cCCcchhhHhhhcCChHHHHHhhcc-------CCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccC--CCcch
Q 008486 368 SVIDENKVTIGASGAIPPLVTLLSE-------GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGM 438 (564)
Q Consensus 368 s~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~ 438 (564)
-.. ..++.|..++.. ...+++..|++||.++....+.. +-+.+++++.+ .+.++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHH
Confidence 632 356677777642 24678899999999987543221 22456777744 56677
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCC
Q 008486 439 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 439 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~k~~A~~~L~~L~~~~ 494 (564)
+..|+.+|.. .+|. ...+..+...+.. .+..+.-.....|.+++..+
T Consensus 531 RiaA~~~Lm~--t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFFE--SKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHH--TCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH--HCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 7666666642 3332 1245566666654 45677777777777777654
No 201
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.36 E-value=9.4 Score=36.86 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=96.9
Q ss_pred hHHHHHHHhcC------CHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhh--ccCCHHHHHHHHHHHHHhhcccC
Q 008486 342 VPSIVHVLRIG------SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL--SEGTQRGKKDAATALFNLCIYQG 413 (564)
Q Consensus 342 i~~Lv~lL~~~------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~aL~nL~~~~~ 413 (564)
+..+..+++++ +.+..+.|...|..+|.+-++-.+|.... +..|-.++ ...++.+++.|..+|..-..+++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 45566777777 34567889999999998888777777642 34444443 33467889999999987666655
Q ss_pred hhHHHH-H--cCChHHHHHhccC-------CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHHhcC--ChHHHH
Q 008486 414 NKGKAV-R--AGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRE 481 (564)
Q Consensus 414 ~~~~i~-~--~g~i~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k~ 481 (564)
.....+ + ...+..+..-|.. ....++..-+.+|.-|..++. .+ ...++..|.+++... ++..|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHH
Confidence 444332 2 3444444443322 233567777899998888762 12 134678888888777 889999
Q ss_pred HHHHHHHHHh
Q 008486 482 NAAAVLVHLC 491 (564)
Q Consensus 482 ~A~~~L~~L~ 491 (564)
.++.++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998888776
No 202
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=81.53 E-value=11 Score=35.00 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=95.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHH-hhccCCHHHHHHHHHHHHHhhc-ccChhHHHH
Q 008486 342 VPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCI-YQGNKGKAV 419 (564)
Q Consensus 342 i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~i~ 419 (564)
++....+.++...++|..|+.+|..+ .. ....++.+.. +..+.+=.+++.++.++..++. ....
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 34455556667789999999988877 21 1124555555 4445567899999999998875 2222
Q ss_pred HcCChHHHHHhccCCCcchHHHHHHHHHHhcCChhhHHHHHhc-CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH
Q 008486 420 RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL 498 (564)
Q Consensus 420 ~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~~~ 498 (564)
..++.+.....+++..++..|...+.--+..+..+ .+. -+++.|-.+..+.+.-+|...+..|..++..+|+-+
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 25677888888999999988887664322221110 011 134444444555678889999999999999999877
Q ss_pred HHHHHc
Q 008486 499 AEAKEL 504 (564)
Q Consensus 499 ~~~~~~ 504 (564)
..+++.
T Consensus 214 ~~~~~~ 219 (240)
T 3l9t_A 214 KIELKN 219 (240)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776653
No 203
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.59 E-value=5.2 Score=34.43 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC------CCHHHHHHHHHHHHhc
Q 008486 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNL 326 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~------~~~~i~~~A~~~L~nL 326 (564)
+....+..|.+.|+++++.+|..|+..|-.+.+. .......+....++..|++++.. .+..++..++..+...
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999876 34566677777899999999874 3788999988888777
Q ss_pred cc
Q 008486 327 SI 328 (564)
Q Consensus 327 s~ 328 (564)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 204
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.27 E-value=14 Score=42.55 Aligned_cols=220 Identities=14% Similarity=0.072 Sum_probs=133.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhcccC----
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSIC---- 329 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~~---- 329 (564)
+-..+..++..+.+++.+.+.+|-..|..+-+ +++. ...+..+|.. .++.+|..|+.+|.+....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45678888888888888888888888876643 4443 3444455544 5889999999999887542
Q ss_pred -CccchhhhccCChHHHHHHHhc-----CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHH
Q 008486 330 -EDNKGSIVSSGAVPSIVHVLRI-----GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAAT 403 (564)
Q Consensus 330 -~~~~~~i~~~g~i~~Lv~lL~~-----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 403 (564)
+.....-++...+..+...-.. .++.++...+.++..++..+... .-.+.++-++.++.. ++......+.
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 1111122233334444433222 13556666777777776432100 013567778887754 3455666777
Q ss_pred HHHHhhcc--c-------ChhH-----HHHHcCChHHHHHh----cc-CCCcchHHHHHHHHHHhcCChhhHHHHHhcCC
Q 008486 404 ALFNLCIY--Q-------GNKG-----KAVRAGVVPTLMHL----LT-EPGGGMVDEALAILAILSSHPEGKAAIGAAEA 464 (564)
Q Consensus 404 aL~nL~~~--~-------~~~~-----~i~~~g~i~~Lv~l----L~-~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 464 (564)
.|..|+.. + ..|. .+.. .++.++.+ |. ..++.+...++.+|..+...-+. ..+++.+.
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~l 248 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchH
Confidence 77777644 1 0111 1222 24444444 42 25677888899999999877543 35667777
Q ss_pred hHHHH-HHHhcCChHHHHHHHHHHHHHhcC
Q 008486 465 VPVLV-EVIGNGSPRNRENAAAVLVHLCAG 493 (564)
Q Consensus 465 i~~Lv-~lL~~~~~~~k~~A~~~L~~L~~~ 493 (564)
++.|+ .+| .++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 77774 555 4688999999999998865
No 205
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.55 E-value=5.2 Score=35.04 Aligned_cols=74 Identities=5% Similarity=0.054 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|+++++.+|..|+..|-.+.+.. ......+....++..|++++.. .++.++..++..+...+.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998763 4455566667788888888875 578899988888777653
No 206
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.02 E-value=20 Score=33.24 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=90.3
Q ss_pred hHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCCHHHHHHHHHHHHhccc--CCcc
Q 008486 257 TKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAVTALLNLSI--CEDN 332 (564)
Q Consensus 257 ~~i~~Lv~~L~-s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~i~~~A~~~L~nLs~--~~~~ 332 (564)
..+..+...|. ++..++|..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. +++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 33445555544 45578888888876665 211 124455555 4556788999999999988864 222
Q ss_pred chhhhccCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhccc
Q 008486 333 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 412 (564)
Q Consensus 333 ~~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 412 (564)
..++.+...+.+++..+|..|+..+.--+.... ....-.-+++.|-.+..+++.-+++...++|..++..+
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 256788899999999999998877653221110 00001124555555556678889999999999999876
Q ss_pred Chh
Q 008486 413 GNK 415 (564)
Q Consensus 413 ~~~ 415 (564)
+..
T Consensus 210 Pd~ 212 (240)
T 3l9t_A 210 PDL 212 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 207
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=77.20 E-value=22 Score=34.25 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=91.7
Q ss_pred ChHHHHHhhccC------CHHHHHHHHHHHHHhhcccChhHHHHHc--CChHHHHHhccCCCcchHHHHHHHHHH-hcCC
Q 008486 382 AIPPLVTLLSEG------TQRGKKDAATALFNLCIYQGNKGKAVRA--GVVPTLMHLLTEPGGGMVDEALAILAI-LSSH 452 (564)
Q Consensus 382 ~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~al~~L~~-L~~~ 452 (564)
.+.....+++++ +......|+..|--++-+-.--.+|++. ..+..|+ +.....+.+++.|..+++. |-.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 455666777776 3334566777777776554444466642 3333343 2233456688999999884 4566
Q ss_pred hhhHHHHHhc--CChHHHHHHHhc-------CChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHH
Q 008486 453 PEGKAAIGAA--EAVPVLVEVIGN-------GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRG 521 (564)
Q Consensus 453 ~~~~~~i~~~--g~i~~Lv~lL~~-------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~ 521 (564)
|.....|.+. ..+..+..-|.. ....+...-+.+|-.|...+.... ...+..|..++..+ ++.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHH
Confidence 7776666553 455555554433 233455556678877777552221 34667888888777 9999
Q ss_pred HHHHHHHHHHHHh
Q 008486 522 KRKAAQLLERMSR 534 (564)
Q Consensus 522 k~~A~~lL~~l~~ 534 (564)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999877764
No 208
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=77.09 E-value=56 Score=32.20 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchhhhccCChHHHHHHHhc-CCHHHHHHHH
Q 008486 283 LLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-GSMEARENAA 361 (564)
Q Consensus 283 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~ 361 (564)
+|.-+....-.-++..++|..+...+.-++.++....+..|+..|.... -..+--...+|.++..+.. +..++.....
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvYSGT 346 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIYSGT 346 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEEecc
Confidence 3334577778889999999999999999999999999999988864221 1111124568888888864 4789999999
Q ss_pred HHHHhccCCc-chhhHhhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhhc-------------c------cCh
Q 008486 362 ATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG-------TQRGKKDAATALFNLCI-------------Y------QGN 414 (564)
Q Consensus 362 ~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~-------------~------~~~ 414 (564)
..|.|..... ..++.-...|+|+.|-..+... +..-++.||..++|-.. + .++
T Consensus 347 GFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~ 426 (619)
T 3c2g_A 347 GFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPN 426 (619)
T ss_dssp HHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHH
T ss_pred hHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChH
Confidence 9999998776 4555556779999998887432 33345566665555321 0 011
Q ss_pred -hH---HHHHcCChHHHHHhccCCC------cchHHHHHHHHHHhcCCh
Q 008486 415 -KG---KAVRAGVVPTLMHLLTEPG------GGMVDEALAILAILSSHP 453 (564)
Q Consensus 415 -~~---~i~~~g~i~~Lv~lL~~~~------~~~~~~al~~L~~L~~~~ 453 (564)
+. ++++..++..|+..|+-+. .+++...+..+..+...|
T Consensus 427 EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP 475 (619)
T 3c2g_A 427 EKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTP 475 (619)
T ss_dssp HHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCC
Confidence 12 3445667777887775532 234445555555554433
No 209
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.14 E-value=6.1 Score=33.63 Aligned_cols=75 Identities=5% Similarity=0.051 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 008486 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~ 328 (564)
+....+..+.+.|.++++.+|..|+..|..+.+.. ......+....++..|+.+++..++.++..++..+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999888753 3334455566677788888877788999999888877753
No 210
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.47 E-value=7 Score=34.50 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC------CCHHHHHHHHHHHHhcc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLS 327 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~i~~~A~~~L~nLs 327 (564)
....+..|.+.|+++++.+|..|+..|-.+.+.. ......+....++..|++++.. .+..++..++..+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998863 4455567777889999999863 36789999998888776
Q ss_pred c
Q 008486 328 I 328 (564)
Q Consensus 328 ~ 328 (564)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 211
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.13 E-value=6.7 Score=29.38 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=32.2
Q ss_pred CCCccCcccccCCCCCEEcCC----CCcccHHHHHHHHHh----CCCCCCC
Q 008486 162 PDDFRCPISLELMKDPVIVST----GQTYERSCIEKWLEA----GHRTCPK 204 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~c----g~t~~r~ci~~~~~~----~~~~CP~ 204 (564)
-..++|.+|.+-+.|-..+.| +|.||..|-...++. +...||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 346899999999998766544 699999998888863 2344664
No 212
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=73.04 E-value=47 Score=38.85 Aligned_cols=214 Identities=11% Similarity=0.029 Sum_probs=120.5
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh--CCCCHHHHHHHHHHHHhcccC-----
Q 008486 259 IEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVTALLNLSIC----- 329 (564)
Q Consensus 259 i~~Lv~~L~s~--~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~i~~~A~~~L~nLs~~----- 329 (564)
+..++..+.++ +.+.+.+|-..|..+-.. ++ +...+...| .+.+..+|..|+..|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44444444444 667788888888877542 22 333333333 345788999999999887532
Q ss_pred -CccchhhhccCChHHHHHHHhc-------CCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHH
Q 008486 330 -EDNKGSIVSSGAVPSIVHVLRI-------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDA 401 (564)
Q Consensus 330 -~~~~~~i~~~g~i~~Lv~lL~~-------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 401 (564)
++.|..| + ..++..+.+ ....++...+.++..++..+... .-.+.++.|+.++.+ ++..+..+
T Consensus 83 ~~e~k~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 83 SRLEKVYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp CHHHHHHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred CHHHHHHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHH
Confidence 1222222 2 334444432 34677888888888877543110 013678888888866 55667778
Q ss_pred HHHHHHhhcc---c----ChhHH-----HHHc--CChHHHHHhccC-------------------CCcchHHHHHHHHHH
Q 008486 402 ATALFNLCIY---Q----GNKGK-----AVRA--GVVPTLMHLLTE-------------------PGGGMVDEALAILAI 448 (564)
Q Consensus 402 ~~aL~nL~~~---~----~~~~~-----i~~~--g~i~~Lv~lL~~-------------------~~~~~~~~al~~L~~ 448 (564)
+.+|..|+.. . ..+.. +.+. .+++.+..+|.. .+..++..++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888888643 1 11111 1111 122333333321 122355666777665
Q ss_pred hcCChhhHHHHHhcC--ChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 008486 449 LSSHPEGKAAIGAAE--AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 494 (564)
Q Consensus 449 L~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~ 494 (564)
....... ..+.+.. .++.+..++. ++.++..|+.+|..++...
T Consensus 234 ~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 234 YIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 5544322 2223332 5666665554 5778999999999998754
No 213
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.95 E-value=13 Score=31.92 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC------CCHHHHHHHHHHHHhc
Q 008486 254 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNL 326 (564)
Q Consensus 254 ~~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~------~~~~i~~~A~~~L~nL 326 (564)
+....+..|.+.|.+.++.+|..|+..|..+.+..- .....+....++..|++++.. .+..++..++..+...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999887543 345566677788889999864 4788999998888877
Q ss_pred cc
Q 008486 327 SI 328 (564)
Q Consensus 327 s~ 328 (564)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 214
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.10 E-value=1.8e+02 Score=33.97 Aligned_cols=250 Identities=11% Similarity=0.023 Sum_probs=134.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhh-----ChhhHHHHHHhCCHHHHHHhhCC---CCHHHHHHHHHHHHhcccCCccchhhhc
Q 008486 267 TSGSPEDQRSAAGEIRLLAKR-----NADNRVAIAEAGAIPLLVGLLST---PDSRTQEHAVTALLNLSICEDNKGSIVS 338 (564)
Q Consensus 267 ~s~~~~~~~~al~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~~---~~~~i~~~A~~~L~nLs~~~~~~~~i~~ 338 (564)
.+.+..++.-|+..|++..+. +++.+..|. ..++..+...-.. ....++.....++..++..+-.. --
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HW 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cc
Confidence 345788999999999987643 333444433 3344444433211 35778888888888887642110 13
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCC---c----chhh-----Hhhhc--CChHHHHHhhcc------------
Q 008486 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVI---D----ENKV-----TIGAS--GAIPPLVTLLSE------------ 392 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~---~----~~~~-----~i~~~--g~i~~Lv~lL~~------------ 392 (564)
.+.++.++.++.+ +...++.+..+|..|+.. . ..+. .+... .+++.+..++..
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5678889988876 456677788888887642 0 1111 11111 233333333432
Q ss_pred -------CCHHHHHHHHHHHHHhhcccChhHHHHHcC--ChHHHHHhccCCCcchHHHHHHHHHHhcCCh---hhHHHHH
Q 008486 393 -------GTQRGKKDAATALFNLCIYQGNKGKAVRAG--VVPTLMHLLTEPGGGMVDEALAILAILSSHP---EGKAAIG 460 (564)
Q Consensus 393 -------~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~al~~L~~L~~~~---~~~~~i~ 460 (564)
++..+...++.++.+....-+. ..+++.. .++.+..++. ++.++..|+.+|..+.... +.+..++
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 1234556667777655443222 1233332 6777776665 5678999999999887533 3333333
Q ss_pred hc---CChHHHHHHHhc------C--ChHHHHHHHHHHHHHhcCCHHHHHHHHH----------cCCHHHHHHhhhcCCH
Q 008486 461 AA---EAVPVLVEVIGN------G--SPRNRENAAAVLVHLCAGDQQYLAEAKE----------LGVMGPLVDLAQNGTD 519 (564)
Q Consensus 461 ~~---g~i~~Lv~lL~~------~--~~~~k~~A~~~L~~L~~~~~~~~~~~~~----------~g~i~~L~~Ll~~~~~ 519 (564)
.. ..+..++..+.. . +....+.-+.++..++. .....+.+ .++++.++.+..+++.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCccH
Confidence 21 113345555421 1 13344555556665552 11211110 1346666666666665
Q ss_pred HHHHHHHH
Q 008486 520 RGKRKAAQ 527 (564)
Q Consensus 520 ~~k~~A~~ 527 (564)
.+-..+..
T Consensus 366 ~vs~~~l~ 373 (1204)
T 3a6p_A 366 FLRSSTQM 373 (1204)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 55555444
No 215
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.00 E-value=72 Score=29.96 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccchh
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 335 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~~ 335 (564)
++.+-.|+...+....+.+...+...+.++-.+... .-..+++.++.+..+.+.++|...+..+...+... .
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~ 85 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----V 85 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----G
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----H
Confidence 345555666555544478889999999977543221 11346678888877788999999999888776321 1
Q ss_pred hhccCChHHHHHHHhcCCHHHHHHHHHHHHhc--------cCCcch---hhHhhhc--CChHHHHHhhccCCHHHHHHHH
Q 008486 336 IVSSGAVPSIVHVLRIGSMEARENAAATLFSL--------SVIDEN---KVTIGAS--GAIPPLVTLLSEGTQRGKKDAA 402 (564)
Q Consensus 336 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L--------s~~~~~---~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~ 402 (564)
-.-..+++.|..+|+..++.+.+.+..+..++ +.++.. .....+. ..-..++.++.+++..++..++
T Consensus 86 ~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~i 165 (257)
T 3gs3_A 86 ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAI 165 (257)
T ss_dssp GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 12344677788888887888887777655544 222211 1122221 3334455556666677776666
Q ss_pred HHHHHhh
Q 008486 403 TALFNLC 409 (564)
Q Consensus 403 ~aL~nL~ 409 (564)
..+-.+.
T Consensus 166 KF~e~vI 172 (257)
T 3gs3_A 166 KFLEGVV 172 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 216
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.46 E-value=1 Score=28.18 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=12.5
Q ss_pred CCccCcccccCCCCCE
Q 008486 163 DDFRCPISLELMKDPV 178 (564)
Q Consensus 163 ~~f~Cpic~~lm~dPv 178 (564)
+.|.||+|+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3599999998887663
No 217
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.67 E-value=10 Score=32.23 Aligned_cols=72 Identities=10% Similarity=0.105 Sum_probs=54.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|.++++.++..|+.+|-.+..+. ......+....++..|..++...++.+++++..++......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999988877766554 34555665566788888888888899999999988866543
No 218
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.55 E-value=16 Score=31.96 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=54.7
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhc-CCHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|..+++.++..|+.+|-.+..+. ......+....++..|+.++.. .++.+++++..++..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4556777788889999999998887776653 4566666667788888888875 4688999998888765543
No 219
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.13 E-value=17 Score=31.09 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=56.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHhhhc------CCHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|.++++.++..|+.+|-.+..+ +..+...+....++..|+.++.. .+..+++++..++..-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466777778889999999999888887765 44666777777889999999864 3688999988888776654
No 220
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.49 E-value=15 Score=33.91 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|++.++.+|..|+..|..+.+. .......+....++..|+++++. .+..++..++..+...+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998864 23345556666777788888764 477899999888887764
No 221
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=58.00 E-value=95 Score=31.05 Aligned_cols=145 Identities=8% Similarity=0.033 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCCCHHHHHHHHHHHHhcccCCccch
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 334 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~i~~~A~~~L~nLs~~~~~~~ 334 (564)
.+.+-.|+...+....+.+...+..++.|... ++. .-.++++.++.+-.+.+.++|...+..|...+.. +.
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~ 95 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DI 95 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CG
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HH
Confidence 34445555544432235788899999987653 332 2257889999999999999999999998877642 11
Q ss_pred hhhccCChHHHHHHHhcCCHHHHHHHHHHHHhcc--------CCcch---hhHhhhc--CChHHHHHhhccCCHHHHHHH
Q 008486 335 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLS--------VIDEN---KVTIGAS--GAIPPLVTLLSEGTQRGKKDA 401 (564)
Q Consensus 335 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls--------~~~~~---~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a 401 (564)
.+ -..+++.|..+|.+.++.+...++.+..++- .++.. .....+. ..-..++.++.+++..++..+
T Consensus 96 el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 96 EL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 11 1445777888888888888777766555441 11111 1112221 334456667778888888888
Q ss_pred HHHHHHhh
Q 008486 402 ATALFNLC 409 (564)
Q Consensus 402 ~~aL~nL~ 409 (564)
+..+-.+.
T Consensus 175 iKFle~VI 182 (386)
T 3o2t_A 175 IKFVEGLI 182 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 222
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.32 E-value=17 Score=31.94 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=57.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc------CCHHHHHHHHHHHHHHHhhH
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~~~ 536 (564)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+.+..++..|+.++.. .+..+++++..++..-....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45677778888999999999999888877755 455667677788899999862 36889999999888776543
No 223
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.70 E-value=19 Score=33.05 Aligned_cols=74 Identities=9% Similarity=0.148 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC-CCHHHHHHHHHHHHhccc
Q 008486 255 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~i~~~A~~~L~nLs~ 328 (564)
..+.+..|.+.|++.++.+|..|+..|..+.+.. ......+....++..|+.++.. .+..++..++..+...+.
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998754 3345566666788888888764 467888888877776653
No 224
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.35 E-value=30 Score=29.88 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHH-HHHhhCC---CCHHHHHHHHHHHHhccc
Q 008486 255 ERTKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPL-LVGLLST---PDSRTQEHAVTALLNLSI 328 (564)
Q Consensus 255 ~~~~i~~Lv~~L~-s~~~~~~~~al~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~~~~i~~~A~~~L~nLs~ 328 (564)
....+..|.+.|+ ++++.+|..|+..|..+.+.. ......+....++.. |++++.. .+..++..++..+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4688999999998 489999999999999998764 555666777778887 7888853 345788888888777653
No 225
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=55.82 E-value=8.9 Score=29.81 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCCCccCcccccCCCCCEEcCC-CCcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008486 160 VIPDDFRCPISLELMKDPVIVST-GQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~~~c-g~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
..-+-+.|-.|....+. .+.| .|-+|..|+...+. ....||.|+.+|+..-
T Consensus 24 s~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCS
T ss_pred cccCcccChhhccccCC--eeeecchhhHHHHHHHHHh-hccCCcccCCcCCcce
Confidence 34456889888866553 4445 68899999998877 4566999999997543
No 226
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=55.52 E-value=2.8 Score=24.92 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=11.5
Q ss_pred CCccCcccccCCCCC
Q 008486 163 DDFRCPISLELMKDP 177 (564)
Q Consensus 163 ~~f~Cpic~~lm~dP 177 (564)
..|.||+|...|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 468888888877765
No 227
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.20 E-value=11 Score=35.50 Aligned_cols=101 Identities=8% Similarity=0.049 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHHHHhhcccC-hhHHHHHcCChHHHHHhc----cC----CCcchHHHHHHHHHHhcCChhh-HHHHHh
Q 008486 392 EGTQRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLL----TE----PGGGMVDEALAILAILSSHPEG-KAAIGA 461 (564)
Q Consensus 392 ~~~~~~~~~a~~aL~nL~~~~~-~~~~i~~~g~i~~Lv~lL----~~----~~~~~~~~al~~L~~L~~~~~~-~~~i~~ 461 (564)
++++..+..++++++|+..++. ++..+........++..+ .+ .+..++..+..++.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467889999999999999988 666554332333444433 22 2446777778888888753210 00 1
Q ss_pred cCChHHHHHHHhc---------CChHHHHHHHHHHHHHhcCCH
Q 008486 462 AEAVPVLVEVIGN---------GSPRNRENAAAVLVHLCAGDQ 495 (564)
Q Consensus 462 ~g~i~~Lv~lL~~---------~~~~~k~~A~~~L~~L~~~~~ 495 (564)
......+++.+.. .+++..-.++.+|.+|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2234556665552 255667777778888876443
No 228
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.81 E-value=7.9 Score=31.89 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=38.9
Q ss_pred CCCccCcccccCCCC---CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 008486 162 PDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 214 (564)
Q Consensus 162 p~~f~Cpic~~lm~d---Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 214 (564)
++-|.|..|...+.+ +....-|..||..|..+.+.. ...|..|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 345999999999963 445567889999999887641 2269999998875443
No 229
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.79 E-value=24 Score=30.19 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=55.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc------CCHHHHHHHHHHHHHHHhhH
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRFI 536 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~~~ 536 (564)
++..|..-|.+.++.++..|+.+|-.+..+.+ .+...+....++..|+.++.. .+..+++++..++..-....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45677777888899999999988887766544 555666667788889998853 47889999988888776543
No 230
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=49.63 E-value=3.8 Score=30.68 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=32.0
Q ss_pred ccCcccccCCCCCE----EcCCCC----cccHHHHHHHHHhCCCCCCCCCCCCcCCCCCch
Q 008486 165 FRCPISLELMKDPV----IVSTGQ----TYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 217 (564)
Q Consensus 165 f~Cpic~~lm~dPv----~~~cg~----t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 217 (564)
-.||+|+..+.-.- .+.-+. --+|.-...-+.+..+.||.|+..+--..+..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 47999987664110 011111 134555566666677889999998876555443
No 231
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.92 E-value=19 Score=33.88 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=63.1
Q ss_pred hcCCHHHHHHHHHHHHhccCCcc-hhhHhhhcCChHHHHHhhcc--------CCHHHHHHHHHHHHHhhcccChhHHHHH
Q 008486 350 RIGSMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSE--------GTQRGKKDAATALFNLCIYQGNKGKAVR 420 (564)
Q Consensus 350 ~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~nL~~~~~~~~~i~~ 420 (564)
.++++..+-.+++++.|+..++. .+..+........+++.+.+ .+..++..+++.++|++........ +
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~ 177 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D 177 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h
Confidence 34467788899999999998887 56655544334455554422 2456777888899999874221000 1
Q ss_pred cCChHHHHHhccC---------CCcchHHHHHHHHHHhcCC
Q 008486 421 AGVVPTLMHLLTE---------PGGGMVDEALAILAILSSH 452 (564)
Q Consensus 421 ~g~i~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~ 452 (564)
......+++++.. .+.+....++-+|++|...
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1233344444431 2567888888899988753
No 232
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.42 E-value=7.9 Score=30.30 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHh
Q 008486 185 TYERSCIEKWLEA 197 (564)
Q Consensus 185 t~~r~ci~~~~~~ 197 (564)
.|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 233
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.60 E-value=8.3 Score=30.13 Aligned_cols=13 Identities=38% Similarity=1.060 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHh
Q 008486 185 TYERSCIEKWLEA 197 (564)
Q Consensus 185 t~~r~ci~~~~~~ 197 (564)
.|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 234
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=45.65 E-value=34 Score=28.90 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=48.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcC-CHHHHHHhhhc-----C---CHHHHHHHHHHHHHHH
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELG-VMGPLVDLAQN-----G---TDRGKRKAAQLLERMS 533 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g-~i~~L~~Ll~~-----~---~~~~k~~A~~lL~~l~ 533 (564)
++..|.+-|...++..+-.|+.+|-.||.++. .++..+...- .|..|...--- | ...+|.+|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 46677777888889999999999999997654 4555555432 33333333211 1 1568999999998886
Q ss_pred h
Q 008486 534 R 534 (564)
Q Consensus 534 ~ 534 (564)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 235
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=45.57 E-value=1.9e+02 Score=26.94 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=68.3
Q ss_pred cCChHHHHHHHhcCCHHHHHHHHHHHHhccCCcchhhHhhhcCChHHHHHhhccCCHHHHHHHHHHHHHh--------hc
Q 008486 339 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL--------CI 410 (564)
Q Consensus 339 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL--------~~ 410 (564)
..+++.++.+-.+.+.++|...+..+...+..+. -....+++.|..++.++++.+.+.++.+..++ +.
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666665555678888888888877762221 12235778888889888888888877765554 33
Q ss_pred ccCh------hHHHHHcCChHHHHHhccCCCcchHHHHHHHHHHhc
Q 008486 411 YQGN------KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 450 (564)
Q Consensus 411 ~~~~------~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~~L~~L~ 450 (564)
++.. ....+ ..+=..++.++.+.+..++-.|++.+..+.
T Consensus 128 ~~~~~~~~~~~W~~m-~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 128 LMEPGDSAEQAWNIL-SLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSSCCHHHHHHHHHH-HHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH-HHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 3321 11111 123345677777788899999998888543
No 236
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=44.54 E-value=7.1 Score=26.20 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=11.4
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999984
No 237
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=44.19 E-value=1.1e+02 Score=30.97 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHHHhhcccChhHHHHHc-CChHHHHHhccC--------CCcchHHHHHHHHHHhcCChhh-HHHHHh
Q 008486 392 EGTQRGKKDAATALFNLCIYQGNKGKAVRA-GVVPTLMHLLTE--------PGGGMVDEALAILAILSSHPEG-KAAIGA 461 (564)
Q Consensus 392 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~-g~i~~Lv~lL~~--------~~~~~~~~al~~L~~L~~~~~~-~~~i~~ 461 (564)
+..+..+..++++|+|+..++.....++.. .....++..+.. .+..++..+..++.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446788899999999999988844444432 234455555422 1345666777777888753210 00 1
Q ss_pred cCChHHHHHHHh---------cCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 008486 462 AEAVPVLVEVIG---------NGSPRNRENAAAVLVHLCAGDQQYLAEA 501 (564)
Q Consensus 462 ~g~i~~Lv~lL~---------~~~~~~k~~A~~~L~~L~~~~~~~~~~~ 501 (564)
...+..+++.+. ..+++..-.++.+|.+|...++......
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a 398 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFA 398 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHh
Confidence 224456666665 2366777888888888887665444433
No 238
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=43.50 E-value=45 Score=38.42 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhccCCcc-hhhHhhhcCChHHHHHhhccC---C--HHHHHHHHHHHHHhhcccChhHHHHHcCChHH
Q 008486 353 SMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEG---T--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 426 (564)
Q Consensus 353 ~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~---~--~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~ 426 (564)
++...+.++++++.+|..-. ....-.=..+++.|+.+.... + ..+....+++++..+..-.....+.+ ..+..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~ 570 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNK 570 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHH
Confidence 58899999999999985422 112111124566666666543 1 12333445666655543333344443 46667
Q ss_pred HHHhccCCCcchHHHHHHHHHHhcC
Q 008486 427 LMHLLTEPGGGMVDEALAILAILSS 451 (564)
Q Consensus 427 Lv~lL~~~~~~~~~~al~~L~~L~~ 451 (564)
|+..+.+.++.+++.|+.++..+|.
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7777777889999999999998874
No 239
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.06 E-value=44 Score=30.49 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=54.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|.++++.++..|+.+|-.+..+.+. ....+....++..|..++.+. +..+++++..++..-...
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 455666777888999999999999888877654 456666666888888888754 678888888887766643
No 240
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.46 E-value=54 Score=28.86 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Q 008486 23 LDISDEVKEQVELVLSQFRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLAEKLQ 83 (564)
Q Consensus 23 ~~~~~~~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (564)
++|++|=+.|+..++.+++.........-...+.++..++ ....||.+.++.++.++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~---~a~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALL---TASSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHH
Confidence 7899999999999998887653221111111222222222 346688877776665544
No 241
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.23 E-value=31 Score=31.82 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=53.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcC-CHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~~~~~~~k~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++... +..+++++..+|......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999988877766543 4556666666777888887654 678999999988877654
No 242
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=40.45 E-value=1.4e+02 Score=25.17 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=59.8
Q ss_pred CChhhHHHHHhcCChHHHHHHHhc---C---ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHH
Q 008486 451 SHPEGKAAIGAAEAVPVLVEVIGN---G---SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGK 522 (564)
Q Consensus 451 ~~~~~~~~i~~~g~i~~Lv~lL~~---~---~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k 522 (564)
...+-+..+++.|++..+-..|.. + +..+|.....+|..+= -....+.+.|+-..++.+.++. ++..|
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHH
Confidence 344557788899999999999964 2 3577888888887773 2356777888888888888765 78899
Q ss_pred HHHHHHHHHHH
Q 008486 523 RKAAQLLERMS 533 (564)
Q Consensus 523 ~~A~~lL~~l~ 533 (564)
+.|..++.--.
T Consensus 125 ~la~~Li~~Ws 135 (145)
T 2xpp_A 125 ASAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998886544
No 243
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.35 E-value=11 Score=26.06 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=11.6
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999985
No 244
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.67 E-value=19 Score=29.51 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
++-|.|..|...+.+ +....-|..||..|..+. ....|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCc
Confidence 456999999988875 555677899999998664 35679999998874
No 245
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.57 E-value=9.8 Score=26.47 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=11.6
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999985
No 246
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.95 E-value=20 Score=29.64 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=37.9
Q ss_pred CCCccCcccccCCC---CCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
++-|.|..|...+. .+....-|..||..|..+.+. ....|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 46799999999885 366677889999999887653 11279999998864
No 247
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.59 E-value=12 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=18.1
Q ss_pred cCcccccCCC-----CCEEcC-CCCcccHHHHHHH
Q 008486 166 RCPISLELMK-----DPVIVS-TGQTYERSCIEKW 194 (564)
Q Consensus 166 ~Cpic~~lm~-----dPv~~~-cg~t~~r~ci~~~ 194 (564)
.||-|...+. .+|.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 5998877553 234443 7777777775555
No 248
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.83 E-value=97 Score=30.65 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHhhcccChhHHHHHcC-ChHHHHHhc----cC----CCcchHHHHHHHHHHhcCChhh-HHHHHh
Q 008486 392 EGTQRGKKDAATALFNLCIYQGNKGKAVRAG-VVPTLMHLL----TE----PGGGMVDEALAILAILSSHPEG-KAAIGA 461 (564)
Q Consensus 392 ~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g-~i~~Lv~lL----~~----~~~~~~~~al~~L~~L~~~~~~-~~~i~~ 461 (564)
+..+..+..++++++|+..++.....++... ....++..+ .. .+..++..+..++.|++..-.. +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4467889999999999999888444444221 223333333 11 2345666777777788753211 00 1
Q ss_pred cCChHHHHHHHh---------cCChHHHHHHHHHHHHHhcCCHHHH
Q 008486 462 AEAVPVLVEVIG---------NGSPRNRENAAAVLVHLCAGDQQYL 498 (564)
Q Consensus 462 ~g~i~~Lv~lL~---------~~~~~~k~~A~~~L~~L~~~~~~~~ 498 (564)
...+..+++.+. ..+++..-.++.+|.+|...++...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 224456666665 2467777888888888887555443
No 249
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=34.97 E-value=39 Score=26.55 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=38.4
Q ss_pred CCCCccCcccccCCCCCEEcC-C-C----CcccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 008486 161 IPDDFRCPISLELMKDPVIVS-T-G----QTYERSCIEKWLEAGHRTCPKTQQTLTSTA 213 (564)
Q Consensus 161 ~p~~f~Cpic~~lm~dPv~~~-c-g----~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 213 (564)
+++.+.|||+++.-..=|.+. . | .-|+...+.+....|. .=|.+|.+++...
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sM 81 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASI 81 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhh
Confidence 356789999999998888762 2 2 2499999999888654 3588888876543
No 250
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.80 E-value=14 Score=28.04 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=11.6
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999985
No 251
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=34.29 E-value=13 Score=25.68 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=11.5
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999975
No 252
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.61 E-value=13 Score=25.97 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.5
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 253
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.73 E-value=76 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.289 Sum_probs=9.4
Q ss_pred CCCccCcccccCCC
Q 008486 162 PDDFRCPISLELMK 175 (564)
Q Consensus 162 p~~f~Cpic~~lm~ 175 (564)
+..+.||+|+.+..
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 45678888776553
No 254
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.85 E-value=10 Score=21.61 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=9.1
Q ss_pred ccCcccccCCC
Q 008486 165 FRCPISLELMK 175 (564)
Q Consensus 165 f~Cpic~~lm~ 175 (564)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 57999998875
No 255
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=31.77 E-value=37 Score=26.19 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=11.6
Q ss_pred CCCccCcccccCCCC
Q 008486 162 PDDFRCPISLELMKD 176 (564)
Q Consensus 162 p~~f~Cpic~~lm~d 176 (564)
...|.|++|...+..
T Consensus 15 ~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 15 KKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CcCeECCCCCCccCC
Confidence 456999999887764
No 256
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.43 E-value=1e+02 Score=26.46 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=51.5
Q ss_pred ChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHH-HHHhhhc---CCHHHHHHHHHHHHHHHhh
Q 008486 464 AVPVLVEVIG-NGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGP-LVDLAQN---GTDRGKRKAAQLLERMSRF 535 (564)
Q Consensus 464 ~i~~Lv~lL~-~~~~~~k~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~-L~~Ll~~---~~~~~k~~A~~lL~~l~~~ 535 (564)
++..|..-|. .+++.++..|+.+|-.+..+. +.....+.+..++.. |+.++.. ....+++++..++..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556777776 478999999998888777654 456666766678887 7887742 2457888888877766553
No 257
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.29 E-value=49 Score=29.09 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 212 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 212 (564)
++-|.|..|...+.+.....-|..||..|..+. ....|..|+.++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~---f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR---FGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT---TSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCccccc---cccccccCCCccCCC
Confidence 355889888887765434456788999987653 345799998887643
No 258
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.10 E-value=64 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHHHh
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLEA 197 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~~~ 197 (564)
++=|.|..|...+.+ +....-|..||+.|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 356999999988864 355667889999999988863
No 259
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=30.62 E-value=1.2e+02 Score=25.42 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHh
Q 008486 256 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEA 298 (564)
Q Consensus 256 ~~~i~~Lv~~L~s~~~~~~~~al~~L~~L~~~~~-~~r~~i~~~ 298 (564)
...+..|.+.|...++....+|+..|..|++... ..+..+...
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4678999999999999999999999999986544 444444443
No 260
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.60 E-value=15 Score=26.99 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=11.6
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 5899999999985
No 261
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.92 E-value=54 Score=28.40 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
++-|.|..|...+.+-....-|..||..|..+-+. ..|..|+..+..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCC
Confidence 46799999998887544456788999999877653 468888777654
No 262
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=29.74 E-value=2.5e+02 Score=23.64 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=53.1
Q ss_pred hcccChhHHHHHcCChHHHHHhccC------CCcchHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHH-hc--CChHH
Q 008486 409 CIYQGNKGKAVRAGVVPTLMHLLTE------PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GN--GSPRN 479 (564)
Q Consensus 409 ~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~--~~~~~ 479 (564)
.....-...+++.|++..+-..|.. ++..++...+.+|.+|- -.++.+.++| +...+-++ ++ .++..
T Consensus 48 l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~Sg-lGkvv~~l~k~~~et~~n 123 (145)
T 2xpp_A 48 LMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSG-VGKIVYFYSINPKESKEV 123 (145)
T ss_dssp HTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHC-HHHHHHHHHHCTTSCHHH
T ss_pred HhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCC-CCcchhhhhcCCccCHHH
Confidence 3444556788899999999988865 45678899999988874 3356666665 55555555 34 34778
Q ss_pred HHHHHHHHHH
Q 008486 480 RENAAAVLVH 489 (564)
Q Consensus 480 k~~A~~~L~~ 489 (564)
|..|-.++..
T Consensus 124 k~la~~Li~~ 133 (145)
T 2xpp_A 124 RASAKALVQK 133 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 263
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.92 E-value=2.4 Score=33.14 Aligned_cols=41 Identities=27% Similarity=0.520 Sum_probs=25.9
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
+..||.|...|.. .-|+.+|..|-..+. -...||.|+++|.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIE--MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEE--EEEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchhh--ccccCcchhhHHH
Confidence 3799999987752 223334776633211 1356999999885
No 264
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.58 E-value=17 Score=24.38 Aligned_cols=40 Identities=5% Similarity=0.107 Sum_probs=22.7
Q ss_pred CccCcccccCCCCCEEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 164 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.|.|++|...+.....+ ..-+..........|+.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhC
Confidence 48899998887754221 11122121223467999988765
No 265
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.10 E-value=82 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=25.1
Q ss_pred CCCccCcccccCCCCCEEcCCCCcccHHHHHHHHH----hCCCCCCCCCCCCc
Q 008486 162 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE----AGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~----~~~~~CP~~~~~l~ 210 (564)
...+.|++|...|... ..+..... +..+.|+.|++.+.
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 4558999999887753 33444443 12357999988775
No 266
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.63 E-value=12 Score=33.30 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCCccCcccccCCCC---CEEcCCCCcccHHHHHHHHHhCCC-CCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHR-TCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~d---Pv~~~cg~t~~r~ci~~~~~~~~~-~CP~~~~~l~~ 211 (564)
++-|.|..|...+.+ +....-|..||..|..+.+. .. .|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS--CCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccc--cCCccccCCCcccc
Confidence 456999999998874 66667889999999887653 22 69999888764
No 267
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.19 E-value=19 Score=27.66 Aligned_cols=13 Identities=46% Similarity=0.782 Sum_probs=11.6
Q ss_pred CCCCCccCccccc
Q 008486 160 VIPDDFRCPISLE 172 (564)
Q Consensus 160 ~~p~~f~Cpic~~ 172 (564)
.+|+++.||+|..
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999985
No 268
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=26.39 E-value=2.2e+02 Score=24.76 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=59.2
Q ss_pred CChhhHHHHHhcCChHHHHHHHhc---C---ChHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--CHHHH
Q 008486 451 SHPEGKAAIGAAEAVPVLVEVIGN---G---SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGK 522 (564)
Q Consensus 451 ~~~~~~~~i~~~g~i~~Lv~lL~~---~---~~~~k~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~Ll~~~--~~~~k 522 (564)
....-+..+++.|++..+-.+|.. + +-.+|.....+|..|-. ....+..+|+-..++.+.++. ++..|
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvV~~l~k~~~et~~nk 139 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESGLGRVVIFYTKSKRVEAQLA 139 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHSHHHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCCCCceeeehhcCCcccHHHH
Confidence 345567788889999999999964 3 34678888888887642 346677888888888777665 78889
Q ss_pred HHHHHHHHHHH
Q 008486 523 RKAAQLLERMS 533 (564)
Q Consensus 523 ~~A~~lL~~l~ 533 (564)
+.|..++..-.
T Consensus 140 rla~~Li~~Ws 150 (170)
T 3nfq_A 140 RLAEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 269
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=45 Score=23.85 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=26.0
Q ss_pred CCCccCcccccCCCCC-EEcCCCCcccHHHHHHHHH
Q 008486 162 PDDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 162 p~~f~Cpic~~lm~dP-v~~~cg~t~~r~ci~~~~~ 196 (564)
++=|.|..|...+.+- ....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4569999998887753 3345678899999887764
No 270
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.68 E-value=1.1e+02 Score=23.19 Aligned_cols=35 Identities=9% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCCCccCcccccCCCCCEE--cCCCCcccHHHHHHH
Q 008486 160 VIPDDFRCPISLELMKDPVI--VSTGQTYERSCIEKW 194 (564)
Q Consensus 160 ~~p~~f~Cpic~~lm~dPv~--~~cg~t~~r~ci~~~ 194 (564)
.++.+-.|+||...-.+-.. -.|+..|-..|+++.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 56788999999854433221 247889999999885
No 271
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.28 E-value=41 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.6
Q ss_pred CccCcccccCCCCCE-EcCCCCcccHHHHHHHHHhCCCCCCCCCCCCc
Q 008486 164 DFRCPISLELMKDPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 164 ~f~Cpic~~lm~dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
.-.|+-|.+...+.. +..-|..|...| +.|..|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 457888888777663 456666665554 45778877775
No 272
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.13 E-value=56 Score=23.80 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=33.5
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccH-HHHHHHHHhCCCCCCCCCCCCc
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYER-SCIEKWLEAGHRTCPKTQQTLT 210 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r-~ci~~~~~~~~~~CP~~~~~l~ 210 (564)
++-|.|..|...+.+ +....-|..||. .|..+.+ ...|..|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCcee
Confidence 456999999988875 556667889999 6976544 445888875543
No 273
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.66 E-value=51 Score=25.52 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=35.1
Q ss_pred CCCccCcccccCCCCC-EEcCCCCcccHHHHHHHHHhCCCCCCCCCCCCcC
Q 008486 162 PDDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 211 (564)
Q Consensus 162 p~~f~Cpic~~lm~dP-v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 211 (564)
++=|.|..|...+.+. ....-|..||..|..+. ....|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 4569999999888654 44567889999997543 34679999988863
No 274
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.33 E-value=64 Score=18.77 Aligned_cols=15 Identities=47% Similarity=0.472 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008486 88 ADLTQESLALHEMVA 102 (564)
Q Consensus 88 ~~~~~E~~~l~~~~~ 102 (564)
.++++|+.++++++.
T Consensus 5 aalkqeiaalkkeia 19 (33)
T 4dzn_A 5 AALKQEIAALKKEIA 19 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467778888877763
No 275
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.29 E-value=58 Score=24.70 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=12.3
Q ss_pred ccCcccccCCCC-CEEcCCCCcccHHHHHH
Q 008486 165 FRCPISLELMKD-PVIVSTGQTYERSCIEK 193 (564)
Q Consensus 165 f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~ 193 (564)
|.|..|...+.+ .....-|..||..|..+
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 445545444432 22223344455555443
No 276
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=60 Score=23.09 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHH
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWL 195 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~ 195 (564)
++=|.|..|...+.+ +....-|..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 456999999988764 4445678889999987654
No 277
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.54 E-value=3e+02 Score=27.79 Aligned_cols=109 Identities=9% Similarity=0.054 Sum_probs=66.9
Q ss_pred CCCcchHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHHHhc--------CChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008486 433 EPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGN--------GSPRNRENAAAVLVHLCAGDQQYLAEAKE 503 (564)
Q Consensus 433 ~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 503 (564)
...+..+.-++++|.||-.++. ++..+........+++.+.. .+..++..++.++.|++...-... .+
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SC
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 3456678889999999998888 45444332234556665531 135677788888889876321100 00
Q ss_pred cCCHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008486 504 LGVMGPLVDLAQ---------NGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 504 ~g~i~~L~~Ll~---------~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
......+.+.+. ..++++...+..+|.+|....+..++...
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~ 399 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN 399 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc
Confidence 123345555554 24788999999999988865554444433
No 278
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=22.14 E-value=3.5e+02 Score=22.71 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=42.5
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Q 008486 19 SYENLDISDEVKEQVELVLSQFRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLAEKLQ 83 (564)
Q Consensus 19 ~~~~~~~~~~~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (564)
.+..|+|+++=+.++..++.+.+...... ..+.++.+..++ ....+|.+.++..+++..
T Consensus 40 m~~~L~LTdeQkqqir~L~~~~r~~~~~~---~~~~r~~l~~Li---~ad~fDeaa~ral~~~~~ 98 (145)
T 3itf_A 40 MFDGISLTEHQRQQMRDLMQQARHEQPPV---NVSELETMHRLV---TAENFDENAVRAQAEKMA 98 (145)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHHHHHSCCC---CHHHHHHHHHHH---TCSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHH---ccCCCCHHHHHHHHHHHH
Confidence 46778999999999999999988765433 234455555544 345688888888777664
No 279
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.13 E-value=80 Score=22.33 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHHH
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~~ 196 (564)
++=|.|..|...+.. .....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 456999999988864 44556788999999887764
No 280
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.22 E-value=6.8e+02 Score=25.67 Aligned_cols=96 Identities=18% Similarity=0.144 Sum_probs=66.0
Q ss_pred HhhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcccChhHHHHHcCChHHHHHhccCCCcc---hHHHHHHHHHHhcCC
Q 008486 376 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG---MVDEALAILAILSSH 452 (564)
Q Consensus 376 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~al~~L~~L~~~ 452 (564)
.+.+.--+..++.-|.++.+.+...||..+. ....+..+...+++..|++++.+.+.. +....=.++..|+.+
T Consensus 111 ~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd 186 (500)
T 3vld_A 111 DVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD 186 (500)
T ss_dssp HHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch
Confidence 3445557788899999998999999999887 555666778889999999999775433 666666677777766
Q ss_pred hhhHHHHHhcCChHHHHHHHhcCC
Q 008486 453 PEGKAAIGAAEAVPVLVEVIGNGS 476 (564)
Q Consensus 453 ~~~~~~i~~~g~i~~Lv~lL~~~~ 476 (564)
.=.|..+.+ ...+.|..+=...+
T Consensus 187 eLirrril~-nnl~lL~~vK~~~~ 209 (500)
T 3vld_A 187 ELIRRRLFD-NNLPYLVSVKGRME 209 (500)
T ss_dssp HHHHHHHHT-TTHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HhHHHHHHHhcCCC
Confidence 645555543 23444443333333
No 281
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.90 E-value=18 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=21.4
Q ss_pred ccCcccccCCCCCEEcCCCCcccHHHHHHHHH----hCCCCCCCCCCCCc
Q 008486 165 FRCPISLELMKDPVIVSTGQTYERSCIEKWLE----AGHRTCPKTQQTLT 210 (564)
Q Consensus 165 f~Cpic~~lm~dPv~~~cg~t~~r~ci~~~~~----~~~~~CP~~~~~l~ 210 (564)
|.|++|...+..+ ..+..... .....|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhc
Confidence 6788888777653 22233332 12357999988765
No 282
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.58 E-value=41 Score=24.46 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCccCcccccCCC--CCEEcCCCCcccHHHHHHHHH
Q 008486 162 PDDFRCPISLELMK--DPVIVSTGQTYERSCIEKWLE 196 (564)
Q Consensus 162 p~~f~Cpic~~lm~--dPv~~~cg~t~~r~ci~~~~~ 196 (564)
++-|.|..|...+. +.....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 45699999998886 444556678899999876544
No 283
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.50 E-value=38 Score=26.00 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCccCcccccCCC-CCEEcCCCCcccHHHHHHHHH-hCCCCCCCCCCCCc
Q 008486 163 DDFRCPISLELMK-DPVIVSTGQTYERSCIEKWLE-AGHRTCPKTQQTLT 210 (564)
Q Consensus 163 ~~f~Cpic~~lm~-dPv~~~cg~t~~r~ci~~~~~-~~~~~CP~~~~~l~ 210 (564)
..|.|++|...|. ....+ ..-+..... ...+.|+.|++.+.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L-------~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGL-------KKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHH-------HHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHH-------HHHHHHHcCCCCCEECCCCCCccC
Confidence 4599999998887 54222 111222222 23467999988775
No 284
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.30 E-value=2.7e+02 Score=27.41 Aligned_cols=109 Identities=9% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCCcchHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHHHhc--------CChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008486 433 EPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGN--------GSPRNRENAAAVLVHLCAGDQQYLAEAKE 503 (564)
Q Consensus 433 ~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~--------~~~~~k~~A~~~L~~L~~~~~~~~~~~~~ 503 (564)
...+..+.-++++|.|+-.++. ++..+........+++.+.. .+..++..++.++.|++...-... .+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SC
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 3456678889999999998888 45444322123344444321 235677788888889876321100 00
Q ss_pred cCCHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008486 504 LGVMGPLVDLAQ---------NGTDRGKRKAAQLLERMSRFIEQQKQAQV 544 (564)
Q Consensus 504 ~g~i~~L~~Ll~---------~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 544 (564)
......+.+++. ..++++...+..+|.+|....+..++...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~ 336 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN 336 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGG
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhc
Confidence 123345555555 35888999999999998865555444433
No 285
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.20 E-value=49 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=23.3
Q ss_pred CCCccCcccccCCCC-CEEcCCCCcccHHHHHHHH
Q 008486 162 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWL 195 (564)
Q Consensus 162 p~~f~Cpic~~lm~d-Pv~~~cg~t~~r~ci~~~~ 195 (564)
++=|.|..|...+.+ +....-|..||+.|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 455888888877654 3445567788888876543
Done!