Query 008488
Match_columns 564
No_of_seqs 219 out of 2702
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:48:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1.1E-64 2.4E-69 564.5 41.9 427 82-549 479-928 (977)
2 PRK14098 glycogen synthase; Pr 100.0 3.7E-63 8E-68 539.5 42.0 428 84-548 5-447 (489)
3 PRK14099 glycogen synthase; Pr 100.0 7.5E-63 1.6E-67 536.6 41.3 428 82-548 1-440 (485)
4 TIGR02095 glgA glycogen/starch 100.0 1.2E-58 2.6E-63 504.8 41.6 421 85-548 1-433 (473)
5 PLN02316 synthase/transferase 100.0 1.5E-58 3.2E-63 524.5 42.1 398 77-550 580-996 (1036)
6 PRK00654 glgA glycogen synthas 100.0 4.4E-58 9.6E-63 499.0 40.8 413 85-548 1-424 (466)
7 cd03791 GT1_Glycogen_synthase_ 100.0 2.2E-55 4.9E-60 479.3 41.5 426 86-548 1-438 (476)
8 COG0297 GlgA Glycogen synthase 100.0 1.3E-55 2.8E-60 470.1 35.1 426 85-551 1-441 (487)
9 TIGR02094 more_P_ylases alpha- 100.0 3.2E-37 7E-42 339.5 33.6 438 87-548 1-552 (601)
10 TIGR02468 sucrsPsyn_pln sucros 100.0 1.3E-36 2.7E-41 344.9 32.0 411 82-548 167-633 (1050)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 3.2E-35 6.9E-40 317.6 32.8 357 99-548 24-402 (439)
12 TIGR02470 sucr_synth sucrose s 100.0 3.1E-35 6.7E-40 327.9 32.1 388 83-548 254-705 (784)
13 TIGR03449 mycothiol_MshA UDP-N 100.0 4.7E-35 1E-39 312.4 31.0 349 87-548 1-364 (405)
14 cd03796 GT1_PIG-A_like This fa 100.0 3.7E-35 8.1E-40 313.0 30.0 323 86-548 1-329 (398)
15 PRK10307 putative glycosyl tra 100.0 5.7E-35 1.2E-39 312.9 30.9 358 85-548 1-369 (412)
16 TIGR02149 glgA_Coryne glycogen 100.0 1.8E-34 3.9E-39 305.4 32.3 336 85-548 1-348 (388)
17 PLN02871 UDP-sulfoquinovose:DA 100.0 1.5E-34 3.3E-39 314.6 31.2 337 82-548 56-396 (465)
18 PRK15484 lipopolysaccharide 1, 100.0 2.4E-33 5.1E-38 297.5 30.7 326 85-548 3-340 (380)
19 PLN00142 sucrose synthase 100.0 1.2E-33 2.6E-38 315.1 29.4 387 85-547 280-727 (815)
20 cd04962 GT1_like_5 This family 100.0 5.2E-33 1.1E-37 291.9 31.8 329 85-548 1-332 (371)
21 cd03818 GT1_ExpC_like This fam 100.0 1.5E-32 3.3E-37 292.7 33.6 346 86-548 1-362 (396)
22 cd04299 GT1_Glycogen_Phosphory 100.0 1.1E-32 2.4E-37 308.3 32.7 435 85-547 86-640 (778)
23 PRK15427 colanic acid biosynth 100.0 1.2E-32 2.7E-37 294.3 31.3 240 226-548 117-366 (406)
24 cd03802 GT1_AviGT4_like This f 100.0 5.7E-32 1.2E-36 279.5 30.1 300 85-549 1-305 (335)
25 PLN02846 digalactosyldiacylgly 100.0 1.7E-32 3.7E-37 292.7 24.9 346 83-548 3-359 (462)
26 cd03800 GT1_Sucrose_synthase T 100.0 1.6E-31 3.4E-36 282.8 31.6 337 100-548 20-364 (398)
27 cd03805 GT1_ALG2_like This fam 100.0 4.6E-32 9.9E-37 287.5 27.3 342 85-548 1-360 (392)
28 PRK10125 putative glycosyl tra 100.0 8.8E-32 1.9E-36 287.1 28.4 343 85-547 1-366 (405)
29 PRK09922 UDP-D-galactose:(gluc 100.0 7.1E-32 1.5E-36 283.9 26.7 182 314-548 131-320 (359)
30 cd03819 GT1_WavL_like This fam 100.0 3.2E-31 7E-36 276.1 31.2 311 99-547 8-325 (355)
31 KOG1111 N-acetylglucosaminyltr 100.0 7.1E-33 1.5E-37 274.7 17.0 309 85-518 1-313 (426)
32 PF08323 Glyco_transf_5: Starc 100.0 1.1E-32 2.5E-37 274.2 17.0 235 86-346 1-244 (245)
33 cd03812 GT1_CapH_like This fam 100.0 4.2E-31 9.1E-36 275.6 29.0 323 86-548 1-327 (358)
34 TIGR03088 stp2 sugar transfera 100.0 8.8E-31 1.9E-35 276.4 29.0 322 85-548 2-334 (374)
35 cd04955 GT1_like_6 This family 100.0 1.2E-29 2.7E-34 264.7 32.0 311 86-524 1-314 (363)
36 cd03816 GT1_ALG1_like This fam 100.0 9.7E-30 2.1E-34 272.9 30.9 344 84-548 3-377 (415)
37 cd03817 GT1_UGDG_like This fam 100.0 8E-30 1.7E-34 264.5 29.2 320 86-524 1-326 (374)
38 cd03792 GT1_Trehalose_phosphor 100.0 9.9E-30 2.1E-34 268.7 30.2 311 86-524 1-321 (372)
39 cd03823 GT1_ExpE7_like This fa 100.0 7.9E-30 1.7E-34 263.7 28.4 325 86-549 1-326 (359)
40 cd04951 GT1_WbdM_like This fam 100.0 1.3E-29 2.8E-34 264.0 30.0 319 86-549 1-323 (360)
41 cd03795 GT1_like_4 This family 100.0 3.1E-29 6.6E-34 260.9 31.2 323 86-548 1-328 (357)
42 cd05844 GT1_like_7 Glycosyltra 100.0 1.5E-29 3.2E-34 265.2 28.3 241 227-548 82-332 (367)
43 cd03806 GT1_ALG11_like This fa 100.0 2.7E-29 5.7E-34 269.7 29.6 190 309-548 182-388 (419)
44 cd03799 GT1_amsK_like This is 100.0 6.3E-29 1.4E-33 258.4 31.0 313 86-548 1-323 (355)
45 PRK15179 Vi polysaccharide bio 100.0 2.7E-29 5.9E-34 280.6 29.9 245 227-546 400-653 (694)
46 cd03814 GT1_like_2 This family 100.0 5.5E-29 1.2E-33 258.2 30.3 326 86-548 1-328 (364)
47 cd03825 GT1_wcfI_like This fam 100.0 4.8E-29 1E-33 260.3 28.8 315 85-548 1-326 (365)
48 cd03821 GT1_Bme6_like This fam 100.0 6.3E-29 1.4E-33 257.5 29.1 335 86-548 1-341 (375)
49 cd03794 GT1_wbuB_like This fam 100.0 1.2E-28 2.6E-33 256.5 30.6 353 86-549 1-362 (394)
50 cd03807 GT1_WbnK_like This fam 100.0 1.3E-28 2.9E-33 254.1 29.6 323 86-548 1-328 (365)
51 cd03801 GT1_YqgM_like This fam 100.0 7.8E-28 1.7E-32 247.3 30.8 333 86-548 1-337 (374)
52 cd03809 GT1_mtfB_like This fam 100.0 1.3E-28 2.9E-33 255.7 24.6 329 86-548 1-332 (365)
53 PRK15490 Vi polysaccharide bio 100.0 3.5E-28 7.6E-33 260.7 27.7 188 316-546 339-532 (578)
54 cd03813 GT1_like_3 This family 100.0 3.5E-29 7.6E-34 273.1 20.5 253 227-548 173-438 (475)
55 PLN02275 transferase, transfer 100.0 1.1E-27 2.4E-32 253.3 30.7 243 227-548 100-369 (371)
56 cd03808 GT1_cap1E_like This fa 100.0 1.4E-27 3.1E-32 245.4 29.8 322 86-548 1-325 (359)
57 PLN02949 transferase, transfer 100.0 1.4E-27 3E-32 258.0 30.1 189 310-548 214-418 (463)
58 cd03822 GT1_ecORF704_like This 100.0 2E-27 4.3E-32 247.0 28.2 315 86-548 1-330 (366)
59 cd03811 GT1_WabH_like This fam 100.0 2.2E-27 4.8E-32 243.1 27.6 314 86-542 1-319 (353)
60 cd03798 GT1_wlbH_like This fam 100.0 6.4E-27 1.4E-31 241.5 30.4 336 87-549 1-341 (377)
61 cd03793 GT1_Glycogen_synthase_ 100.0 9.5E-28 2.1E-32 257.5 24.1 412 90-548 7-548 (590)
62 cd03820 GT1_amsD_like This fam 100.0 6E-27 1.3E-31 239.8 28.3 310 86-549 1-316 (348)
63 cd03804 GT1_wbaZ_like This fam 100.0 3.3E-27 7.2E-32 247.0 23.4 178 308-548 145-322 (351)
64 PLN02501 digalactosyldiacylgly 100.0 4E-27 8.6E-32 254.9 22.8 238 226-548 433-677 (794)
65 PHA01633 putative glycosyl tra 99.9 3.6E-25 7.9E-30 228.1 27.7 203 308-549 84-304 (335)
66 TIGR03087 stp1 sugar transfera 99.9 7.2E-26 1.6E-30 241.5 18.4 188 308-548 164-358 (397)
67 cd04946 GT1_AmsK_like This fam 99.9 1.6E-24 3.4E-29 232.0 24.5 190 308-548 175-373 (407)
68 TIGR02918 accessory Sec system 99.9 1.1E-24 2.4E-29 237.6 22.3 190 313-548 267-463 (500)
69 PHA01630 putative group 1 glyc 99.9 5.5E-24 1.2E-28 221.0 18.9 172 308-526 85-259 (331)
70 cd03788 GT1_TPS Trehalose-6-Ph 99.9 7.8E-24 1.7E-28 229.6 18.7 258 228-549 132-424 (460)
71 TIGR02400 trehalose_OtsA alpha 99.9 4.2E-23 9.1E-28 222.6 22.5 258 228-549 128-419 (456)
72 cd04949 GT1_gtfA_like This fam 99.9 5.4E-23 1.2E-27 216.7 20.9 185 312-549 153-342 (372)
73 PRK00726 murG undecaprenyldiph 99.9 6.5E-22 1.4E-26 207.9 27.5 308 85-548 2-320 (357)
74 cd03785 GT1_MurG MurG is an N- 99.9 2.4E-21 5.2E-26 202.5 27.6 308 86-548 1-320 (350)
75 TIGR01133 murG undecaprenyldip 99.9 2E-21 4.2E-26 203.0 26.9 305 85-547 1-316 (348)
76 PLN03063 alpha,alpha-trehalose 99.9 6.7E-21 1.5E-25 217.6 19.5 260 228-550 148-441 (797)
77 cd01635 Glycosyltransferase_GT 99.9 6.9E-20 1.5E-24 177.2 23.5 117 407-523 109-228 (229)
78 PRK13609 diacylglycerol glucos 99.8 3.9E-19 8.5E-24 188.5 25.5 184 314-547 145-333 (380)
79 PLN02605 monogalactosyldiacylg 99.8 1E-18 2.2E-23 185.6 28.2 182 314-547 148-342 (382)
80 PF00534 Glycos_transf_1: Glyc 99.8 7.9E-20 1.7E-24 171.4 15.6 148 387-548 2-154 (172)
81 PRK14501 putative bifunctional 99.8 8.1E-20 1.8E-24 208.7 15.9 258 228-550 134-426 (726)
82 PRK05749 3-deoxy-D-manno-octul 99.8 1.3E-18 2.8E-23 187.3 21.9 196 308-548 170-384 (425)
83 TIGR02398 gluc_glyc_Psyn gluco 99.8 1.7E-18 3.6E-23 186.4 20.8 259 228-550 133-446 (487)
84 cd04950 GT1_like_1 Glycosyltra 99.8 1.4E-17 3E-22 176.4 27.1 188 308-549 145-337 (373)
85 PRK13608 diacylglycerol glucos 99.8 1.5E-16 3.3E-21 169.5 26.2 183 315-547 146-333 (391)
86 KOG0853 Glycosyltransferase [C 99.8 4.1E-17 8.9E-22 172.6 20.1 202 313-547 206-428 (495)
87 PRK09814 beta-1,6-galactofuran 99.7 8.9E-16 1.9E-20 160.1 26.0 172 307-548 114-296 (333)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 8E-16 1.7E-20 161.7 24.5 188 313-548 138-333 (363)
89 PRK00025 lpxB lipid-A-disaccha 99.7 9.1E-16 2E-20 162.5 23.2 181 313-547 131-336 (380)
90 TIGR00236 wecB UDP-N-acetylglu 99.7 2E-15 4.3E-20 159.3 22.5 237 227-548 86-330 (365)
91 PLN03064 alpha,alpha-trehalose 99.7 1.2E-15 2.6E-20 174.2 19.2 261 228-551 232-526 (934)
92 PF05693 Glycogen_syn: Glycoge 99.6 9.9E-16 2.1E-20 164.2 13.6 375 90-516 2-509 (633)
93 KOG1387 Glycosyltransferase [C 99.6 2.5E-14 5.3E-19 142.2 18.1 173 313-524 219-408 (465)
94 KOG2941 Beta-1,4-mannosyltrans 99.6 1.5E-12 3.2E-17 129.8 26.2 267 227-547 103-400 (444)
95 COG0438 RfaG Glycosyltransfera 99.6 1.9E-13 4E-18 138.6 18.7 186 316-549 150-339 (381)
96 PF13692 Glyco_trans_1_4: Glyc 99.5 1.3E-14 2.9E-19 130.3 8.2 126 402-548 2-131 (135)
97 TIGR00215 lpxB lipid-A-disacch 99.5 1.2E-11 2.6E-16 131.5 23.7 153 311-506 133-292 (385)
98 PF13439 Glyco_transf_4: Glyco 99.4 1.2E-12 2.6E-17 121.7 11.9 177 87-363 1-177 (177)
99 COG0058 GlgP Glucan phosphoryl 99.4 2.1E-12 4.5E-17 142.6 12.8 415 95-531 110-635 (750)
100 PF13579 Glyco_trans_4_4: Glyc 99.4 2.2E-12 4.7E-17 117.9 9.3 160 101-356 1-160 (160)
101 PF00982 Glyco_transf_20: Glyc 99.3 3.8E-11 8.2E-16 129.9 17.9 261 228-550 142-438 (474)
102 PRK10117 trehalose-6-phosphate 99.3 3.1E-11 6.7E-16 129.2 16.8 259 228-551 124-418 (474)
103 PRK14986 glycogen phosphorylas 99.2 8E-10 1.7E-14 123.8 22.6 296 228-530 313-699 (815)
104 PLN02205 alpha,alpha-trehalose 99.2 1.6E-10 3.4E-15 133.0 16.9 260 229-550 203-515 (854)
105 COG0380 OtsA Trehalose-6-phosp 99.2 3.4E-09 7.4E-14 113.2 21.1 281 196-551 126-444 (486)
106 TIGR03713 acc_sec_asp1 accesso 99.1 7.8E-10 1.7E-14 121.3 15.7 129 402-547 319-483 (519)
107 PRK14985 maltodextrin phosphor 99.1 2.7E-09 5.9E-14 119.2 16.9 295 227-529 302-684 (798)
108 cd04300 GT1_Glycogen_Phosphory 99.0 3.8E-09 8.3E-14 118.6 15.9 292 227-530 300-686 (797)
109 PF00343 Phosphorylase: Carboh 99.0 1.6E-08 3.5E-13 112.1 16.8 295 230-529 216-599 (713)
110 TIGR02093 P_ylase glycogen/sta 98.9 2.4E-09 5.2E-14 119.8 10.2 296 227-530 297-683 (794)
111 TIGR02919 accessory Sec system 98.9 9.5E-09 2.1E-13 110.4 13.8 168 315-549 238-408 (438)
112 PRK12446 undecaprenyldiphospho 98.9 7.1E-07 1.5E-11 93.9 27.4 105 388-507 173-279 (352)
113 PF09314 DUF1972: Domain of un 98.9 6.2E-08 1.3E-12 91.5 15.9 182 86-358 3-185 (185)
114 KOG3742 Glycogen synthase [Car 98.7 2.3E-09 5E-14 110.0 0.6 291 228-547 174-573 (692)
115 PF13528 Glyco_trans_1_3: Glyc 98.6 6.5E-06 1.4E-10 85.0 22.1 116 401-548 192-316 (318)
116 PF04007 DUF354: Protein of un 98.6 5.2E-06 1.1E-10 86.1 20.6 294 85-550 1-308 (335)
117 COG0707 MurG UDP-N-acetylgluco 98.6 3.6E-05 7.7E-10 80.8 26.7 113 402-524 183-304 (357)
118 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1.5E-05 3.3E-10 84.3 22.3 185 315-548 143-335 (365)
119 TIGR03590 PseG pseudaminic aci 98.5 9.9E-05 2.1E-09 75.1 25.4 96 403-508 172-268 (279)
120 PF13477 Glyco_trans_4_2: Glyc 98.4 3.8E-06 8.3E-11 75.6 12.2 138 86-324 1-139 (139)
121 cd03784 GT1_Gtf_like This fami 98.4 5.7E-05 1.2E-09 80.6 22.3 120 401-548 239-368 (401)
122 COG0763 LpxB Lipid A disacchar 98.4 2.6E-05 5.6E-10 80.7 18.4 227 193-510 60-294 (381)
123 PF02350 Epimerase_2: UDP-N-ac 98.1 0.00032 6.9E-09 73.6 19.9 238 227-550 67-316 (346)
124 PF02684 LpxB: Lipid-A-disacch 98.0 0.00071 1.5E-08 71.3 21.1 159 310-510 127-290 (373)
125 PRK01021 lpxB lipid-A-disaccha 98.0 0.00085 1.8E-08 74.1 21.7 156 311-510 356-518 (608)
126 PF13524 Glyco_trans_1_2: Glyc 97.8 1.9E-05 4.1E-10 66.0 4.5 46 479-524 1-46 (92)
127 PF12000 Glyco_trans_4_3: Gkyc 97.8 0.0007 1.5E-08 63.3 13.9 130 193-362 39-170 (171)
128 COG3914 Spy Predicted O-linked 97.7 0.0065 1.4E-07 65.8 22.3 123 391-518 421-563 (620)
129 TIGR00661 MJ1255 conserved hyp 97.7 0.0032 6.9E-08 65.3 20.0 101 403-523 190-296 (321)
130 COG1817 Uncharacterized protei 97.5 0.0094 2E-07 60.1 18.4 165 313-524 123-296 (346)
131 PHA03392 egt ecdysteroid UDP-g 97.3 0.044 9.5E-07 60.6 22.9 120 402-547 297-427 (507)
132 COG1819 Glycosyl transferases, 97.2 0.011 2.5E-07 63.4 15.9 126 401-550 237-366 (406)
133 TIGR03492 conserved hypothetic 97.1 0.067 1.4E-06 57.3 21.6 147 314-508 158-323 (396)
134 PF00862 Sucrose_synth: Sucros 97.1 0.00074 1.6E-08 72.1 6.3 182 85-329 273-481 (550)
135 PF07429 Glyco_transf_56: 4-al 96.9 0.32 6.9E-06 50.3 22.7 122 402-524 184-313 (360)
136 COG3660 Predicted nucleoside-d 96.8 0.17 3.7E-06 50.0 18.7 197 226-511 69-276 (329)
137 COG1519 KdtA 3-deoxy-D-manno-o 96.8 0.13 2.9E-06 54.2 19.4 182 306-523 167-369 (419)
138 PF13844 Glyco_transf_41: Glyc 96.7 0.011 2.4E-07 63.9 11.2 113 390-508 275-392 (468)
139 PRK02797 4-alpha-L-fucosyltran 96.6 0.57 1.2E-05 47.8 21.4 116 403-519 146-270 (322)
140 PF06258 Mito_fiss_Elm1: Mitoc 96.4 0.093 2E-06 54.2 14.9 118 387-510 134-259 (311)
141 COG0381 WecB UDP-N-acetylgluco 96.3 1.2 2.7E-05 46.7 22.3 174 315-525 144-325 (383)
142 PRK10017 colanic acid biosynth 95.9 3.1 6.8E-05 45.0 26.5 169 307-508 167-354 (426)
143 COG3980 spsG Spore coat polysa 95.7 1.2 2.6E-05 44.7 18.1 87 404-502 161-248 (318)
144 PRK14089 ipid-A-disaccharide s 95.5 0.4 8.7E-06 50.3 15.1 90 403-506 169-260 (347)
145 PF04464 Glyphos_transf: CDP-G 95.3 0.21 4.6E-06 52.7 12.5 198 309-548 127-332 (369)
146 PF11997 DUF3492: Domain of un 95.1 0.051 1.1E-06 54.9 6.7 45 85-130 1-45 (268)
147 KOG1050 Trehalose-6-phosphate 95.0 0.94 2E-05 51.9 17.2 259 228-549 141-437 (732)
148 TIGR01426 MGT glycosyltransfer 95.0 0.16 3.6E-06 54.0 10.7 123 401-547 225-354 (392)
149 PF10087 DUF2325: Uncharacteri 93.9 0.16 3.4E-06 42.9 6.0 81 434-515 2-90 (97)
150 TIGR02195 heptsyl_trn_II lipop 92.9 1.1 2.4E-05 46.5 12.0 113 387-507 161-277 (334)
151 PF11440 AGT: DNA alpha-glucos 92.2 11 0.00023 38.0 16.5 140 401-549 179-350 (355)
152 COG4641 Uncharacterized protei 91.7 5.7 0.00012 41.6 14.9 162 316-523 138-310 (373)
153 PF06925 MGDG_synth: Monogalac 91.6 0.79 1.7E-05 42.7 8.0 25 315-342 136-160 (169)
154 PF01075 Glyco_transf_9: Glyco 91.6 1.5 3.1E-05 43.3 10.3 101 402-507 106-209 (247)
155 TIGR03609 S_layer_CsaB polysac 91.5 7 0.00015 39.8 15.6 100 403-507 173-276 (298)
156 PRK10422 lipopolysaccharide co 90.3 3.1 6.6E-05 43.7 11.9 100 403-507 185-288 (352)
157 PF02951 GSH-S_N: Prokaryotic 90.1 3.6 7.9E-05 36.1 10.2 82 85-169 1-86 (119)
158 TIGR02201 heptsyl_trn_III lipo 90.0 4.4 9.5E-05 42.3 12.7 100 403-507 183-286 (344)
159 cd03789 GT1_LPS_heptosyltransf 89.2 2.6 5.7E-05 42.4 10.0 102 404-512 124-229 (279)
160 PF08288 PIGA: PIGA (GPI ancho 88.6 2.2 4.7E-05 35.2 7.0 35 227-267 50-84 (90)
161 PRK10916 ADP-heptose:LPS hepto 87.6 7 0.00015 40.8 12.3 111 388-506 168-286 (348)
162 COG0859 RfaF ADP-heptose:LPS h 86.3 6 0.00013 41.2 10.8 97 404-507 178-277 (334)
163 PF12038 DUF3524: Domain of un 86.2 4.3 9.4E-05 37.7 8.4 21 313-333 116-136 (168)
164 COG4671 Predicted glycosyl tra 85.6 50 0.0011 34.6 22.4 131 403-551 221-364 (400)
165 TIGR02193 heptsyl_trn_I lipopo 84.9 9.4 0.0002 39.2 11.5 98 403-507 181-280 (319)
166 PF05159 Capsule_synth: Capsul 84.7 5.3 0.00011 40.1 9.2 101 400-509 115-227 (269)
167 PF01975 SurE: Survival protei 84.6 1.1 2.3E-05 43.2 3.8 39 85-130 1-39 (196)
168 KOG2099 Glycogen phosphorylase 81.5 1.3 2.7E-05 48.3 3.2 136 390-525 551-714 (843)
169 PF04101 Glyco_tran_28_C: Glyc 80.7 1.4 3.1E-05 40.7 3.0 47 458-510 56-102 (167)
170 PF01113 DapB_N: Dihydrodipico 78.9 3.3 7.1E-05 36.5 4.6 47 468-514 59-105 (124)
171 PF08660 Alg14: Oligosaccharid 75.1 22 0.00047 33.3 9.2 36 227-264 92-127 (170)
172 PRK10964 ADP-heptose:LPS hepto 74.7 25 0.00055 36.1 10.6 96 406-508 183-280 (322)
173 PLN02448 UDP-glycosyltransfera 74.2 20 0.00043 39.2 10.1 108 403-524 276-390 (459)
174 PRK00207 sulfur transfer compl 73.2 6.3 0.00014 35.1 4.8 40 85-127 1-41 (128)
175 TIGR00696 wecB_tagA_cpsF bacte 72.2 22 0.00048 33.5 8.6 95 416-516 33-140 (177)
176 PLN02562 UDP-glycosyltransfera 71.4 20 0.00044 39.0 9.2 111 403-524 275-395 (448)
177 PF00201 UDPGT: UDP-glucoronos 71.3 6.3 0.00014 43.3 5.4 107 401-524 276-389 (500)
178 COG2910 Putative NADH-flavin r 71.2 5.6 0.00012 37.7 4.1 34 85-128 1-34 (211)
179 PF03033 Glyco_transf_28: Glyc 70.5 6.7 0.00015 34.6 4.5 28 100-127 8-35 (139)
180 COG1703 ArgK Putative periplas 66.8 1.4E+02 0.003 30.8 13.1 41 82-128 49-89 (323)
181 cd06533 Glyco_transf_WecG_TagA 66.8 44 0.00095 31.2 9.3 100 413-515 28-138 (171)
182 PLN03004 UDP-glycosyltransfera 65.6 27 0.00058 38.1 8.6 115 402-524 271-401 (451)
183 PF03016 Exostosin: Exostosin 65.1 18 0.0004 36.5 7.0 67 470-546 230-299 (302)
184 PF03808 Glyco_tran_WecB: Glyc 64.1 47 0.001 31.0 9.0 97 414-516 31-141 (172)
185 cd03146 GAT1_Peptidase_E Type 64.1 57 0.0012 31.5 9.9 106 405-510 3-124 (212)
186 COG0111 SerA Phosphoglycerate 64.0 25 0.00053 36.6 7.6 81 431-513 142-239 (324)
187 PF04230 PS_pyruv_trans: Polys 62.1 1.4E+02 0.003 28.8 12.6 91 413-508 188-284 (286)
188 PRK08410 2-hydroxyacid dehydro 60.0 27 0.00059 36.0 7.2 81 431-513 145-238 (311)
189 PF02826 2-Hacid_dh_C: D-isome 59.0 59 0.0013 30.4 8.7 81 431-513 36-133 (178)
190 PRK13932 stationary phase surv 58.7 11 0.00025 37.7 3.9 39 83-129 4-42 (257)
191 PF03358 FMN_red: NADPH-depend 58.1 18 0.00039 32.6 4.9 40 85-127 1-40 (152)
192 PF04413 Glycos_transf_N: 3-De 58.0 75 0.0016 30.1 9.3 40 307-355 140-179 (186)
193 TIGR01007 eps_fam capsular exo 55.9 19 0.0004 34.4 4.9 40 84-127 16-55 (204)
194 PRK06932 glycerate dehydrogena 55.5 34 0.00074 35.4 7.0 80 432-513 148-239 (314)
195 PLN00016 RNA-binding protein; 55.0 18 0.00038 38.3 4.9 39 83-127 51-89 (378)
196 cd03129 GAT1_Peptidase_E_like 53.9 1.5E+02 0.0032 28.5 10.8 99 413-511 11-125 (210)
197 PRK09271 flavodoxin; Provision 53.2 24 0.00052 32.5 4.9 36 85-125 1-36 (160)
198 PF02374 ArsA_ATPase: Anion-tr 52.8 15 0.00033 37.8 3.8 37 85-128 1-39 (305)
199 PRK05718 keto-hydroxyglutarate 52.7 1.2E+02 0.0026 29.5 9.8 71 416-486 25-97 (212)
200 COG4635 HemG Flavodoxin [Energ 52.4 20 0.00044 33.1 4.0 37 85-126 1-37 (175)
201 PLN02927 antheraxanthin epoxid 52.2 22 0.00047 40.8 5.3 34 82-126 79-112 (668)
202 PRK06179 short chain dehydroge 51.9 59 0.0013 32.1 8.0 25 100-127 13-37 (270)
203 PRK06249 2-dehydropantoate 2-r 51.4 20 0.00044 36.8 4.6 35 82-127 3-37 (313)
204 PRK03692 putative UDP-N-acetyl 50.9 63 0.0014 32.2 7.7 95 416-516 90-197 (243)
205 PRK06487 glycerate dehydrogena 50.5 38 0.00082 35.1 6.4 81 431-513 148-239 (317)
206 PRK05866 short chain dehydroge 49.0 31 0.00067 35.0 5.4 36 82-127 38-73 (293)
207 TIGR00087 surE 5'/3'-nucleotid 48.2 20 0.00044 35.7 3.7 37 85-129 1-37 (244)
208 PRK06756 flavodoxin; Provision 48.0 32 0.00068 31.0 4.8 37 85-126 2-38 (148)
209 PLN03007 UDP-glucosyltransfera 47.9 45 0.00098 36.7 6.8 97 402-508 286-391 (482)
210 TIGR01380 glut_syn glutathione 47.9 18 0.00039 37.3 3.5 40 85-127 1-40 (312)
211 PLN02670 transferase, transfer 47.9 78 0.0017 34.8 8.6 116 402-525 279-406 (472)
212 PF00551 Formyl_trans_N: Formy 47.8 45 0.00098 31.3 6.0 34 85-127 1-36 (181)
213 PLN02167 UDP-glycosyltransfera 45.0 63 0.0014 35.5 7.4 112 402-524 281-407 (475)
214 COG1052 LdhA Lactate dehydroge 44.4 67 0.0015 33.4 7.0 44 470-513 194-242 (324)
215 PLN02410 UDP-glucoronosyl/UDP- 44.0 1.1E+02 0.0025 33.3 9.1 39 84-128 7-45 (451)
216 PRK13234 nifH nitrogenase redu 43.1 31 0.00067 35.3 4.3 39 82-127 1-41 (295)
217 PRK15409 bifunctional glyoxyla 42.7 84 0.0018 32.6 7.5 44 470-513 194-242 (323)
218 PLN02928 oxidoreductase family 42.4 63 0.0014 33.9 6.6 46 468-513 218-268 (347)
219 PLN02306 hydroxypyruvate reduc 42.3 65 0.0014 34.4 6.7 45 469-513 229-278 (386)
220 PRK14619 NAD(P)H-dependent gly 41.9 34 0.00074 35.1 4.5 35 82-127 2-36 (308)
221 TIGR01915 npdG NADPH-dependent 41.6 30 0.00066 33.5 3.8 33 85-127 1-33 (219)
222 PRK09739 hypothetical protein; 41.6 52 0.0011 31.3 5.4 42 83-127 2-43 (199)
223 PRK15438 erythronate-4-phospha 41.5 68 0.0015 34.1 6.7 61 470-530 161-237 (378)
224 KOG2884 26S proteasome regulat 41.4 1.1E+02 0.0023 29.8 7.2 115 402-548 108-225 (259)
225 PRK06015 keto-hydroxyglutarate 41.3 2.5E+02 0.0053 27.1 9.9 89 416-504 14-121 (201)
226 PF00389 2-Hacid_dh: D-isomer 41.1 1.9E+02 0.0041 25.3 8.6 55 458-514 20-74 (133)
227 PF06564 YhjQ: YhjQ protein; 41.0 39 0.00085 33.6 4.5 38 85-126 1-38 (243)
228 TIGR01182 eda Entner-Doudoroff 41.0 2.7E+02 0.0058 26.9 10.1 89 416-504 18-125 (204)
229 PRK05246 glutathione synthetas 40.9 26 0.00056 36.2 3.4 40 85-127 2-41 (316)
230 PRK13933 stationary phase surv 40.8 30 0.00064 34.7 3.6 37 85-129 1-37 (253)
231 PRK13935 stationary phase surv 40.7 30 0.00064 34.7 3.6 38 85-130 1-38 (253)
232 cd01080 NAD_bind_m-THF_DH_Cycl 40.5 2E+02 0.0043 26.8 9.0 81 419-504 30-113 (168)
233 COG1553 DsrE Uncharacterized c 40.2 59 0.0013 28.7 4.9 40 85-127 1-41 (126)
234 PLN02173 UDP-glucosyl transfer 39.8 1.6E+02 0.0035 32.1 9.4 113 403-524 266-384 (449)
235 PRK00048 dihydrodipicolinate r 39.6 78 0.0017 31.6 6.5 42 470-511 54-95 (257)
236 PRK08305 spoVFB dipicolinate s 39.6 53 0.0011 31.6 5.0 37 83-127 4-42 (196)
237 PF00185 OTCace: Aspartate/orn 39.4 35 0.00075 31.5 3.7 37 83-128 1-37 (158)
238 PRK13243 glyoxylate reductase; 39.4 1.1E+02 0.0025 31.8 7.9 44 470-513 198-246 (333)
239 TIGR00639 PurN phosphoribosylg 39.2 97 0.0021 29.5 6.8 34 85-127 1-36 (190)
240 COG0496 SurE Predicted acid ph 39.0 32 0.00069 34.3 3.5 37 85-129 1-37 (252)
241 PRK10037 cell division protein 38.8 42 0.00092 33.2 4.5 36 85-126 1-38 (250)
242 PLN02572 UDP-sulfoquinovose sy 38.6 45 0.00097 36.2 5.0 33 83-125 46-78 (442)
243 PF12683 DUF3798: Protein of u 38.6 1.9E+02 0.0042 29.1 8.8 92 387-484 22-114 (275)
244 PLN02863 UDP-glucoronosyl/UDP- 38.6 85 0.0018 34.5 7.1 113 402-524 284-410 (477)
245 cd00027 BRCT Breast Cancer Sup 38.4 98 0.0021 22.7 5.6 64 432-507 2-65 (72)
246 PRK13934 stationary phase surv 38.1 35 0.00075 34.4 3.6 37 85-129 1-37 (266)
247 TIGR02069 cyanophycinase cyano 38.1 3.4E+02 0.0075 27.0 10.8 104 408-511 4-127 (250)
248 PLN02210 UDP-glucosyl transfer 37.6 1.6E+02 0.0035 32.1 9.1 111 402-525 270-392 (456)
249 TIGR01754 flav_RNR ribonucleot 37.6 51 0.0011 29.4 4.4 34 85-123 1-34 (140)
250 PF04321 RmlD_sub_bind: RmlD s 37.5 52 0.0011 33.3 5.0 31 85-125 1-31 (286)
251 PLN02207 UDP-glycosyltransfera 36.8 1.3E+02 0.0028 33.0 8.1 115 402-524 276-399 (468)
252 PLN02555 limonoid glucosyltran 36.2 1.9E+02 0.004 31.9 9.3 112 403-524 279-404 (480)
253 PF12996 DUF3880: DUF based on 36.2 58 0.0013 26.1 4.1 44 312-366 14-57 (79)
254 PF02441 Flavoprotein: Flavopr 35.7 58 0.0013 28.7 4.4 36 85-127 1-36 (129)
255 PRK00346 surE 5'(3')-nucleotid 35.6 41 0.00088 33.6 3.7 37 85-129 1-37 (250)
256 PRK05708 2-dehydropantoate 2-r 35.6 51 0.0011 33.8 4.5 33 84-127 2-34 (305)
257 TIGR00288 conserved hypothetic 35.2 1.5E+02 0.0033 27.4 7.1 67 415-483 89-155 (160)
258 PRK10840 transcriptional regul 34.6 4E+02 0.0086 25.1 11.3 105 431-547 3-121 (216)
259 PRK05647 purN phosphoribosylgl 34.5 77 0.0017 30.5 5.3 34 85-127 2-37 (200)
260 PRK12480 D-lactate dehydrogena 34.5 91 0.002 32.5 6.3 44 470-513 192-240 (330)
261 PRK11104 hemG protoporphyrinog 34.5 50 0.0011 31.0 3.9 36 85-126 1-36 (177)
262 PLN02554 UDP-glycosyltransfera 34.3 1.4E+02 0.003 32.9 8.0 113 403-525 276-410 (481)
263 TIGR03012 sulf_tusD_dsrE sulfu 34.2 73 0.0016 28.2 4.7 38 86-126 1-39 (127)
264 COG0716 FldA Flavodoxins [Ener 33.9 54 0.0012 29.7 4.0 36 85-125 2-37 (151)
265 cd01425 RPS2 Ribosomal protein 33.8 3E+02 0.0066 26.1 9.3 40 475-515 126-166 (193)
266 PF10727 Rossmann-like: Rossma 33.8 30 0.00065 30.8 2.1 35 82-127 8-42 (127)
267 COG0300 DltE Short-chain dehyd 33.5 63 0.0014 32.6 4.6 27 100-129 15-41 (265)
268 PRK11790 D-3-phosphoglycerate 32.7 93 0.002 33.5 6.1 45 469-513 196-245 (409)
269 PF09949 DUF2183: Uncharacteri 32.7 1.3E+02 0.0029 25.5 5.8 33 430-462 63-95 (100)
270 PRK06522 2-dehydropantoate 2-r 32.6 54 0.0012 33.1 4.2 32 85-127 1-32 (304)
271 TIGR00036 dapB dihydrodipicoli 32.5 89 0.0019 31.4 5.6 36 475-510 67-102 (266)
272 TIGR03371 cellulose_yhjQ cellu 32.3 64 0.0014 31.4 4.6 39 85-127 1-39 (246)
273 PF00201 UDPGT: UDP-glucoronos 32.1 17 0.00037 39.9 0.4 28 101-128 10-37 (500)
274 PLN02152 indole-3-acetate beta 32.1 1.7E+02 0.0036 32.1 8.0 116 402-523 262-393 (455)
275 PF02525 Flavodoxin_2: Flavodo 32.1 65 0.0014 30.5 4.4 39 85-126 1-41 (199)
276 COG1763 MobB Molybdopterin-gua 32.0 74 0.0016 29.5 4.5 40 84-128 1-40 (161)
277 PRK00211 sulfur relay protein 32.0 73 0.0016 27.9 4.3 40 85-127 2-41 (119)
278 PRK07236 hypothetical protein; 31.9 44 0.00096 35.3 3.5 35 82-127 4-38 (386)
279 PRK10360 DNA-binding transcrip 31.7 3.9E+02 0.0085 24.2 10.7 105 433-549 3-115 (196)
280 PF00205 TPP_enzyme_M: Thiamin 31.6 1.5E+02 0.0033 26.1 6.5 18 466-483 67-84 (137)
281 PF02635 DrsE: DsrE/DsrF-like 31.4 1E+02 0.0022 26.0 5.2 40 85-127 1-43 (122)
282 TIGR03018 pepcterm_TyrKin exop 31.3 86 0.0019 30.0 5.1 40 84-127 34-74 (207)
283 PRK07574 formate dehydrogenase 31.2 95 0.0021 33.1 5.8 44 470-513 242-290 (385)
284 PLN02695 GDP-D-mannose-3',5'-e 30.9 59 0.0013 34.3 4.2 35 83-127 20-54 (370)
285 PRK06436 glycerate dehydrogena 30.6 1.7E+02 0.0036 30.2 7.3 44 470-513 167-215 (303)
286 PRK15469 ghrA bifunctional gly 30.4 1.2E+02 0.0025 31.4 6.2 46 468-513 182-232 (312)
287 cd05565 PTS_IIB_lactose PTS_II 30.3 1.9E+02 0.0041 24.4 6.4 73 434-507 4-79 (99)
288 CHL00072 chlL photochlorophyll 30.3 68 0.0015 32.7 4.4 35 85-127 1-37 (290)
289 TIGR03453 partition_RepA plasm 30.2 75 0.0016 33.8 4.9 39 83-127 102-142 (387)
290 PRK06703 flavodoxin; Provision 30.0 88 0.0019 28.2 4.7 37 85-126 2-38 (151)
291 PRK13398 3-deoxy-7-phosphohept 30.0 5.9E+02 0.013 25.6 11.6 102 404-508 28-142 (266)
292 PRK07454 short chain dehydroge 29.8 69 0.0015 30.9 4.2 35 84-127 5-39 (241)
293 TIGR03029 EpsG chain length de 29.6 88 0.0019 31.3 5.1 39 84-126 102-140 (274)
294 PRK07308 flavodoxin; Validated 29.6 78 0.0017 28.4 4.3 27 99-125 11-37 (146)
295 PRK10427 putative PTS system f 29.4 1E+02 0.0022 26.8 4.7 39 84-127 2-42 (114)
296 PRK06753 hypothetical protein; 29.2 49 0.0011 34.6 3.3 32 85-127 1-32 (373)
297 PF04392 ABC_sub_bind: ABC tra 29.2 3.8E+02 0.0082 27.0 9.7 91 416-507 116-218 (294)
298 PRK05723 flavodoxin; Provision 29.1 84 0.0018 28.7 4.4 36 85-125 1-36 (151)
299 PRK08605 D-lactate dehydrogena 29.0 1.9E+02 0.0042 30.0 7.6 44 470-513 194-242 (332)
300 COG2102 Predicted ATPases of P 28.6 4.2E+02 0.0091 26.0 9.1 85 403-490 61-149 (223)
301 PRK13235 nifH nitrogenase redu 28.5 63 0.0014 32.4 3.8 28 100-127 9-38 (274)
302 COG0003 ArsA Predicted ATPase 28.4 71 0.0015 33.2 4.2 75 84-177 1-78 (322)
303 cd01078 NAD_bind_H4MPT_DH NADP 28.4 3.4E+02 0.0073 25.4 8.7 58 431-488 52-109 (194)
304 COG4088 Predicted nucleotide k 28.3 50 0.0011 32.1 2.7 39 85-128 1-39 (261)
305 COG1090 Predicted nucleoside-d 28.2 48 0.001 33.6 2.7 30 100-129 4-33 (297)
306 TIGR03010 sulf_tusC_dsrF sulfu 28.1 89 0.0019 27.0 4.2 39 86-127 1-39 (116)
307 PRK14494 putative molybdopteri 28.1 93 0.002 30.7 4.7 38 85-127 1-38 (229)
308 PRK13869 plasmid-partitioning 28.0 85 0.0018 33.7 4.8 38 83-126 119-158 (405)
309 PRK04155 chaperone protein Hch 27.9 1E+02 0.0022 31.5 5.2 47 82-128 47-100 (287)
310 PF00072 Response_reg: Respons 27.9 3.3E+02 0.0071 22.1 8.4 99 435-546 2-111 (112)
311 COG2085 Predicted dinucleotide 27.6 48 0.001 32.2 2.5 29 101-129 7-35 (211)
312 PRK10538 malonic semialdehyde 27.6 79 0.0017 30.8 4.3 33 85-127 1-33 (248)
313 PF15024 Glyco_transf_18: Glyc 27.6 1.4E+02 0.003 33.4 6.3 136 402-550 277-428 (559)
314 PLN00141 Tic62-NAD(P)-related 27.5 82 0.0018 30.9 4.4 34 84-127 17-50 (251)
315 PRK13011 formyltetrahydrofolat 27.5 2.2E+02 0.0048 29.0 7.5 38 83-129 88-127 (286)
316 TIGR00853 pts-lac PTS system, 27.5 1.9E+02 0.004 24.2 5.8 73 434-508 7-83 (95)
317 PF01408 GFO_IDH_MocA: Oxidore 27.3 3.1E+02 0.0068 23.0 7.6 68 430-507 24-93 (120)
318 PLN02778 3,5-epimerase/4-reduc 27.3 69 0.0015 32.6 3.9 33 82-124 7-39 (298)
319 PRK12921 2-dehydropantoate 2-r 27.1 64 0.0014 32.7 3.6 31 85-126 1-31 (305)
320 PRK10446 ribosomal protein S6 27.1 77 0.0017 32.3 4.2 35 85-127 1-35 (300)
321 PF10093 DUF2331: Uncharacteri 26.9 3E+02 0.0065 29.2 8.5 114 384-506 165-288 (374)
322 PRK05653 fabG 3-ketoacyl-(acyl 26.7 89 0.0019 29.9 4.4 34 84-127 5-38 (246)
323 PRK13397 3-deoxy-7-phosphohept 26.5 6E+02 0.013 25.4 10.1 91 416-508 27-130 (250)
324 PF13460 NAD_binding_10: NADH( 26.4 58 0.0012 30.0 2.9 30 100-129 4-33 (183)
325 cd02040 NifH NifH gene encodes 26.3 97 0.0021 30.7 4.7 27 101-127 10-38 (270)
326 PRK00257 erythronate-4-phospha 26.0 1.8E+02 0.0039 31.0 6.8 44 470-513 161-213 (381)
327 PRK01372 ddl D-alanine--D-alan 25.8 1E+02 0.0022 31.2 4.9 44 82-127 2-45 (304)
328 PF10649 DUF2478: Protein of u 25.8 1.2E+02 0.0025 28.2 4.7 39 473-511 90-134 (159)
329 COG2327 WcaK Polysaccharide py 25.8 8.4E+02 0.018 26.1 23.6 37 468-509 277-313 (385)
330 TIGR03609 S_layer_CsaB polysac 25.6 5.3E+02 0.011 25.9 10.1 93 407-508 3-107 (298)
331 PRK12827 short chain dehydroge 25.6 95 0.0021 29.9 4.4 34 83-126 5-38 (249)
332 PRK13849 putative crown gall t 25.4 1E+02 0.0023 30.2 4.6 37 85-127 1-39 (231)
333 PRK08163 salicylate hydroxylas 25.1 71 0.0015 33.7 3.6 33 83-126 3-35 (396)
334 COG0569 TrkA K+ transport syst 24.9 52 0.0011 32.2 2.3 26 102-127 7-32 (225)
335 cd03145 GAT1_cyanophycinase Ty 24.8 6.3E+02 0.014 24.3 11.0 46 467-512 74-129 (217)
336 cd02032 Bchl_like This family 24.7 1E+02 0.0022 30.7 4.5 35 85-127 1-37 (267)
337 TIGR01281 DPOR_bchL light-inde 24.7 1E+02 0.0022 30.7 4.5 34 85-126 1-36 (268)
338 CHL00175 minD septum-site dete 24.6 1.2E+02 0.0027 30.3 5.1 38 85-126 15-52 (281)
339 PRK06924 short chain dehydroge 24.5 87 0.0019 30.4 3.9 25 100-127 10-34 (251)
340 PRK10675 UDP-galactose-4-epime 24.3 88 0.0019 32.0 4.1 32 85-126 1-32 (338)
341 PF01081 Aldolase: KDPG and KH 24.1 6.4E+02 0.014 24.1 11.6 92 410-504 15-125 (196)
342 PRK13931 stationary phase surv 24.1 89 0.0019 31.4 3.8 38 85-129 1-41 (261)
343 PLN02206 UDP-glucuronate decar 24.0 1E+02 0.0023 33.4 4.7 33 83-125 118-150 (442)
344 PLN02166 dTDP-glucose 4,6-dehy 24.0 84 0.0018 34.1 3.9 35 82-126 118-152 (436)
345 PRK13396 3-deoxy-7-phosphohept 23.9 8.7E+02 0.019 25.6 11.2 102 403-508 101-216 (352)
346 PRK06732 phosphopantothenate-- 23.9 1E+02 0.0022 30.2 4.2 26 99-127 24-49 (229)
347 PRK05920 aromatic acid decarbo 23.9 1.5E+02 0.0032 28.7 5.2 37 83-127 2-39 (204)
348 PRK10569 NAD(P)H-dependent FMN 23.8 1.4E+02 0.0031 28.3 5.1 38 85-126 1-39 (191)
349 PF01012 ETF: Electron transfe 23.8 2.9E+02 0.0063 25.1 7.1 90 416-506 16-120 (164)
350 COG0299 PurN Folate-dependent 23.7 1.3E+02 0.0028 28.9 4.6 32 226-267 78-109 (200)
351 PLN02712 arogenate dehydrogena 23.5 1.3E+02 0.0029 34.6 5.6 36 81-127 49-84 (667)
352 PRK05693 short chain dehydroge 23.4 90 0.002 30.9 3.8 34 85-127 1-34 (274)
353 PRK08340 glucose-1-dehydrogena 23.4 1E+02 0.0023 30.1 4.3 33 85-127 1-33 (259)
354 PRK06849 hypothetical protein; 23.3 98 0.0021 32.8 4.3 35 83-127 3-37 (389)
355 KOG0068 D-3-phosphoglycerate d 23.3 3.5E+02 0.0076 28.4 7.8 44 471-514 195-243 (406)
356 PRK07023 short chain dehydroge 23.1 1.1E+02 0.0023 29.7 4.2 33 85-127 2-34 (243)
357 COG1922 WecG Teichoic acid bio 23.1 4.5E+02 0.0097 26.4 8.4 96 415-516 92-201 (253)
358 COG4007 Predicted dehydrogenas 23.1 56 0.0012 32.7 2.1 32 100-136 31-63 (340)
359 PRK05884 short chain dehydroge 23.1 1.2E+02 0.0026 29.2 4.5 33 85-127 1-33 (223)
360 PRK07364 2-octaprenyl-6-methox 22.9 87 0.0019 33.2 3.8 34 83-127 17-50 (415)
361 TIGR02622 CDP_4_6_dhtase CDP-g 22.9 1.1E+02 0.0023 31.8 4.4 34 84-127 4-37 (349)
362 TIGR01969 minD_arch cell divis 22.9 1.2E+02 0.0026 29.5 4.6 26 102-127 13-38 (251)
363 PF13614 AAA_31: AAA domain; P 22.8 1.5E+02 0.0033 26.4 4.9 29 99-127 10-38 (157)
364 COG3349 Uncharacterized conser 22.7 80 0.0017 34.7 3.4 32 85-127 1-32 (485)
365 KOG0780 Signal recognition par 22.6 7.3E+02 0.016 26.7 10.1 104 405-510 157-277 (483)
366 COG0655 WrbA Multimeric flavod 22.6 1.4E+02 0.0031 28.5 4.9 40 85-127 1-40 (207)
367 PLN02208 glycosyltransferase f 22.5 5E+02 0.011 28.2 9.6 99 399-505 249-354 (442)
368 PLN02657 3,8-divinyl protochlo 22.4 1.5E+02 0.0031 31.6 5.4 35 83-127 59-93 (390)
369 PRK07538 hypothetical protein; 22.4 75 0.0016 33.9 3.2 32 85-127 1-32 (413)
370 COG0240 GpsA Glycerol-3-phosph 22.3 1.1E+02 0.0024 31.8 4.2 34 84-128 1-34 (329)
371 PRK08105 flavodoxin; Provision 22.3 1.3E+02 0.0027 27.4 4.2 28 99-126 11-38 (149)
372 PRK14620 NAD(P)H-dependent gly 22.2 98 0.0021 31.9 3.9 32 85-127 1-32 (326)
373 TIGR03219 salicylate_mono sali 22.2 74 0.0016 33.9 3.1 31 85-126 1-32 (414)
374 PF01210 NAD_Gly3P_dh_N: NAD-d 22.2 55 0.0012 29.9 1.8 21 107-127 11-31 (157)
375 PF03721 UDPG_MGDP_dh_N: UDP-g 22.1 1.2E+02 0.0025 28.7 4.1 32 85-127 1-32 (185)
376 cd02071 MM_CoA_mut_B12_BD meth 21.9 4.4E+02 0.0096 22.7 7.5 39 404-442 53-92 (122)
377 COG2984 ABC-type uncharacteriz 21.9 4.5E+02 0.0098 27.3 8.4 92 417-509 145-248 (322)
378 PRK09730 putative NAD(P)-bindi 21.8 1E+02 0.0022 29.7 3.8 34 85-127 1-34 (247)
379 PRK13185 chlL protochlorophyll 21.6 1.4E+02 0.003 29.7 4.8 27 101-127 11-39 (270)
380 PRK05993 short chain dehydroge 21.5 1.2E+02 0.0026 30.2 4.3 25 100-127 13-37 (277)
381 TIGR00715 precor6x_red precorr 21.4 1.4E+02 0.003 30.0 4.6 55 457-511 176-234 (256)
382 PRK06953 short chain dehydroge 21.2 99 0.0021 29.5 3.5 22 106-127 13-34 (222)
383 PRK08229 2-dehydropantoate 2-r 21.0 1E+02 0.0023 31.8 3.9 33 84-127 2-34 (341)
384 PRK07588 hypothetical protein; 21.0 85 0.0018 33.1 3.2 32 85-127 1-32 (391)
385 PRK14618 NAD(P)H-dependent gly 20.8 1.1E+02 0.0023 31.7 3.9 33 84-127 4-36 (328)
386 PRK06180 short chain dehydroge 20.8 1.2E+02 0.0026 30.1 4.2 25 100-127 13-37 (277)
387 PF09587 PGA_cap: Bacterial ca 20.8 6.1E+02 0.013 24.9 9.2 51 78-129 122-194 (250)
388 TIGR03837 efp_adjacent_2 conse 20.7 6.8E+02 0.015 26.6 9.5 117 381-506 161-286 (371)
389 PRK09004 FMN-binding protein M 20.7 1.4E+02 0.0031 26.9 4.2 27 99-125 11-37 (146)
390 PF09140 MipZ: ATPase MipZ; I 20.5 1.4E+02 0.0031 29.8 4.4 35 86-126 1-37 (261)
391 TIGR01426 MGT glycosyltransfer 20.5 72 0.0016 33.6 2.6 21 107-127 12-32 (392)
392 PLN00164 glucosyltransferase; 20.5 4.6E+02 0.0099 28.9 8.8 57 463-524 345-406 (480)
393 PRK10669 putative cation:proto 20.4 3.1E+02 0.0068 30.7 7.7 26 102-127 424-449 (558)
394 PRK06718 precorrin-2 dehydroge 20.3 3.6E+02 0.0077 25.8 7.1 90 424-515 2-109 (202)
395 PRK07417 arogenate dehydrogena 20.3 1.4E+02 0.003 30.1 4.5 32 85-127 1-32 (279)
396 PF01656 CbiA: CobQ/CobB/MinD/ 20.1 1.6E+02 0.0034 27.2 4.5 27 101-127 10-36 (195)
397 PLN02487 zeta-carotene desatur 20.1 2.1E+02 0.0046 32.2 6.2 35 82-127 73-107 (569)
398 COG1192 Soj ATPases involved i 20.0 1.6E+02 0.0035 29.0 4.9 38 84-127 1-41 (259)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-64 Score=564.53 Aligned_cols=427 Identities=33% Similarity=0.560 Sum_probs=354.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcc-----eEEEEEeCCeeeeEEEEE
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-----VVIELKVGDKIEKVRFFH 156 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 156 (564)
.++|||+||++|+.|+.++||++++++.|+++|+++||+|.||+|.|+.....+... ......++......+++.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 468999999999999999999999999999999999999999999998665221111 112222333333467788
Q ss_pred eeecCeeEEEEeC--C-cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEE
Q 008488 157 CHKRGVDRVFVDH--P-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV 233 (564)
Q Consensus 157 ~~~~gv~~~~v~~--~-~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih 233 (564)
...+||++||+++ | .|+.+ ..+|+ +.|+..||.+||++++++++.+++ +|| |||
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~~----------~PD-IIH 615 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSGK----------KPD-IIH 615 (977)
T ss_pred EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcCC----------CCC-EEE
Confidence 8889999999984 3 25555 57886 679999999999999999988765 599 999
Q ss_pred EcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHH
Q 008488 234 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAG 313 (564)
Q Consensus 234 ~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 313 (564)
+|||++++++.++...|...+ +.++|+|+||||..|||.|+...+..++++.......+.+.. . ....+++++.+
T Consensus 616 ~HDW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~---~-~~~~iN~LK~G 690 (977)
T PLN02939 616 CHDWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQD---N-AHGRINVVKGA 690 (977)
T ss_pred ECCccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhh---c-cCCchHHHHHH
Confidence 999999998555444454433 467899999999999999988888778887665432211111 1 23468999999
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhh--ccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (564)
+..||.|+|||+.+++++.. .+|..++..++ ..++.+|+||||++.|+|.++++|+.+|+..++ ++|..++.++|
T Consensus 691 Iv~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLR 767 (977)
T PLN02939 691 IVYSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALR 767 (977)
T ss_pred HHhCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHH
Confidence 99999999999999999886 45655555444 358999999999999999999999999999997 69999999999
Q ss_pred HHhCCCCC-CCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC-hhhHHHHHHHHHhCC--CceEEEeccCh
Q 008488 392 AEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYP--EKARGVAKFNI 467 (564)
Q Consensus 392 ~~~gl~~~-~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~L~~~~~--~~v~~~~~~~~ 467 (564)
+++|++.+ .+.|+|+|+||+.++||++.+++|+..+.+.+++|+|+|+|+ ..+++.++.+..+++ ++|.+.+.++.
T Consensus 768 kelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de 847 (977)
T PLN02939 768 KQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDE 847 (977)
T ss_pred HHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCH
Confidence 99999864 467899999999999999999999998877789999999996 456788888888875 47999999999
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccccccc---------CcceeEeeccccccccCCCCC
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---------GFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~---------g~~G~l~~~~~~~~~~v~~~d 538 (564)
.+.+.+|++||+||+||++|+||++++|||+||+|||++++||+.|+|.+ +.|||+ +++.|
T Consensus 848 ~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfL----------f~~~D 917 (977)
T PLN02939 848 ALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFT----------FLTPD 917 (977)
T ss_pred HHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEE----------ecCCC
Confidence 98889999999999999999999999999999999999999999999976 579999 58889
Q ss_pred HHHHHhhcccC
Q 008488 539 NSRVIPRIPLD 549 (564)
Q Consensus 539 ~~aLa~aI~~~ 549 (564)
+++|+++|.+.
T Consensus 918 ~eaLa~AL~rA 928 (977)
T PLN02939 918 EQGLNSALERA 928 (977)
T ss_pred HHHHHHHHHHH
Confidence 98888877643
No 2
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=3.7e-63 Score=539.55 Aligned_cols=428 Identities=29% Similarity=0.579 Sum_probs=357.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccc-cCc-ce--EEE--EEeCCeeeeEEEEEe
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDA-WDT-DV--VIE--LKVGDKIEKVRFFHC 157 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~-~~~-~~--~~~--~~~~~~~~~~~~~~~ 157 (564)
.|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|++..+. +.. .. ..+ +.++......+..+.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 499999999999999999999999999999999999999999999887653 111 11 222 233332223333333
Q ss_pred ee--cCeeEEEEeCCcccccccCCCCCcccCCC-CCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEE
Q 008488 158 HK--RGVDRVFVDHPWFLAKVWGKTQSKIYGPR-TGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVA 234 (564)
Q Consensus 158 ~~--~gv~~~~v~~~~~~~~~w~~~~~~iy~~~-~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~ 234 (564)
.. .|+++|++++|.|+.| ..+|+.. .|.+|.|+.+||.+||++++++++.+.+ +|| |||+
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r------~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~----------~pD-iiH~ 147 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKR------NGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGW----------KPD-IIHC 147 (489)
T ss_pred cccCCCceEEEEeCHHHcCC------CCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEe
Confidence 33 3799999999999887 6799876 6788999999999999999999987754 599 9999
Q ss_pred cCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHH
Q 008488 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 314 (564)
Q Consensus 235 h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 314 (564)
|||+++++|.+++..+.....+.++|+|+|+||..+||.++...+..+ ++..+...+ . .....+++++.++
T Consensus 148 hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~------~--~~~~~~n~lk~~i 218 (489)
T PRK14098 148 HDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGL------H--REGDEVNMLYTGV 218 (489)
T ss_pred cCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhh------h--hcCCcccHHHHHH
Confidence 999999999999987755555678999999999999998876544333 333322111 0 0123578999999
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhh--ccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
..||.|+|||+.+++++...+.+|..++.+++ ..++.+|+||||++.|+|.+++.+..+|+..++ ++|..+|.++++
T Consensus 219 ~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~-~~k~~~k~~l~~ 297 (489)
T PRK14098 219 EHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERL-DGKLENKKALLE 297 (489)
T ss_pred HhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchh-hhHHHHHHHHHH
Confidence 99999999999999999763234444444443 358999999999999999999999999999876 688899999999
Q ss_pred HhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHH
Q 008488 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~ 472 (564)
++|++.+++.++|+++||+.++||++.+++|++++.+.+++|+|+|+|+..+++.++++..++++++.+.+.++.++++.
T Consensus 298 ~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 298 EVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred HhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 99999887889999999999999999999999999877899999999987788899999998888899999999999999
Q ss_pred HHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccccccc----CcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 473 il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~----g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|++||++++||++|+||++++|||+||+|+|++++||+.|++.+ +.|||+ +++.|+++|+++|.+
T Consensus 378 ~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l----------~~~~d~~~la~ai~~ 447 (489)
T PRK14098 378 AIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFI----------FHDYTPEALVAKLGE 447 (489)
T ss_pred HHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeE----------eCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999874 689999 688999999988764
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=7.5e-63 Score=536.62 Aligned_cols=428 Identities=38% Similarity=0.600 Sum_probs=353.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcce-EEEEEeCCeeeeEEEEEeeec
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDV-VIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (564)
|++|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|++..+...... ..++.+.-. ...++++...+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG-GPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC-ceEEEEEEEeC
Confidence 4679999999999999999999999999999999999999999999998754432221 222322111 14567778889
Q ss_pred CeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
|+++||+++|.++.+ .+.+|+...|.+|.|+.+||.+||++++++++.+.. .++|| |||+|||+++
T Consensus 80 ~v~~~~~~~~~~f~r-----~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~--------~~~pD-IiH~Hdw~~~ 145 (485)
T PRK14099 80 GLDLFVLDAPHLYDR-----PGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVP--------GFVPD-IVHAHDWQAG 145 (485)
T ss_pred CceEEEEeChHhhCC-----CCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhcc--------CCCCC-EEEECCcHHH
Confidence 999999999998876 134898877888999999999999999999876521 14699 9999999999
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
++|.+++... ..++|+|+|+||..+|+.++...+..++++...... ++.. +...+++++.++..||.|
T Consensus 146 l~~~~l~~~~-----~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~k~~i~~ad~v 213 (485)
T PRK14099 146 LAPAYLHYSG-----RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSL----DGVE---YYGGIGYLKAGLQLADRI 213 (485)
T ss_pred HHHHHHHhCC-----CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCc----hhhh---hCCCccHHHHHHHhcCee
Confidence 9999887422 136899999999999999887666667766544321 1110 123457899999999999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhhh--ccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (564)
+|||+.+++++.. ..+|+.++.+++ ..++.+|+||||++.|+|.+++.++.+|+..++ ++|..++.++|+++|++.
T Consensus 214 itVS~~~a~ei~~-~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~ 291 (485)
T PRK14099 214 TTVSPTYALEIQG-PEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETL-AARAANKAALQARFGLDP 291 (485)
T ss_pred eecChhHHHHHhc-ccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHH-HhHHHhHHHHHHHcCCCc
Confidence 9999999999985 224443333332 358999999999999999999999999999886 788999999999999987
Q ss_pred CCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
+.+.++|+++||+.++||++.+++|++.+.+.+++|+|+|+|++.+++.++++..++++++..+.+++.+..+.++++||
T Consensus 292 ~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 292 DPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred ccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCC
Confidence 66678999999999999999999999999777899999999987788899999888887776666776666665567899
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++++||++|+||++++|||+||+|+|++++||+.|+|.++ .|||+ +++.|+++|+++|.+
T Consensus 372 ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l----------~~~~d~~~La~ai~~ 440 (485)
T PRK14099 372 ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ----------FSPVTADALAAALRK 440 (485)
T ss_pred EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876 68999 789999999998875
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.2e-58 Score=504.81 Aligned_cols=421 Identities=45% Similarity=0.771 Sum_probs=357.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCc----ceEEEEEeCCeeeeEEEEEeeec
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT----DVVIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
|||+||++|++|+.++||+++++..|+++|+++||+|+|++|.|++..+.+.. ....++.+++....+++.+...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999877665432 22345566667777888888899
Q ss_pred CeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
|+++++++++.++.+ ...+|++ +|.++..|+..|+++++++++.++. +|| |||+|||+++
T Consensus 81 ~v~~~~i~~~~~~~r-----~~~~y~~----~~~d~~~r~~~f~~a~~~~~~~~~~----------~~D-iiH~hdw~~~ 140 (473)
T TIGR02095 81 GVPVYFIDNPSLFDR-----PGGIYGD----DYPDNAERFAFFSRAAAELLSGLGW----------QPD-VVHAHDWHTA 140 (473)
T ss_pred CceEEEEECHHHcCC-----CCCCCCC----CCCCHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEECCcHHH
Confidence 999999999877664 1247864 6889999999999999999887653 599 9999999999
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
+++.+++..++.. ++|+|+|+|+..+|+.++...+..++++..+.... .++ ....+++++.++..||.|
T Consensus 141 ~~~~~l~~~~~~~----~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~k~~~~~ad~v 209 (473)
T TIGR02095 141 LVPALLKAVYRPN----PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHME----GLE---FYGRVNFLKGGIVYADRV 209 (473)
T ss_pred HHHHHHHhhccCC----CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCch----hhh---cCCchHHHHHHHHhCCcC
Confidence 9999998876211 48999999999999988876666666664433211 111 112578999999999999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhh--hccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (564)
++||+.+++++... .+|..++..+ +..++.+|+||+|.+.|+|.+++++..+|+...+ +.+..++..+++++|++.
T Consensus 210 ~tVS~~~~~ei~~~-~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~ 287 (473)
T TIGR02095 210 TTVSPTYAREILTP-EFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDL-AGKAENKEALQEELGLPV 287 (473)
T ss_pred eecCHhHHHHhcCC-cCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccch-hhhhhhHHHHHHHcCCCc
Confidence 99999999998752 3444433322 2458999999999999999999999999998765 578888999999999987
Q ss_pred CCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
+++.++|+|+||+.++||++.+++|++++.+.+++|+|+|+|++.+++.++++..+++.++.+...++.++++.++++||
T Consensus 288 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 367 (473)
T TIGR02095 288 DDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGAD 367 (473)
T ss_pred cCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 66779999999999999999999999999877799999999987788899999988888899999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC------cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g------~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++++||++|+||++++|||+||+|||++++||+.|+|.++ .+|++ +++.|+++|+++|.+
T Consensus 368 v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l----------~~~~d~~~la~~i~~ 433 (473)
T TIGR02095 368 FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFL----------FEEYDPGALLAALSR 433 (473)
T ss_pred EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 89999 688899999888754
No 5
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.5e-58 Score=524.50 Aligned_cols=398 Identities=32% Similarity=0.540 Sum_probs=331.7
Q ss_pred cccccCCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEE
Q 008488 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFH 156 (564)
Q Consensus 77 ~~~~~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (564)
+.....++|||+||++|++|+.++||+++++..|+++|+++||+|.|++|.|+...............+......+++++
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 659 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWF 659 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEE
Confidence 44455678999999999999999999999999999999999999999999998654322222122223332333567788
Q ss_pred eeecCeeEEEEeCC-cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEc
Q 008488 157 CHKRGVDRVFVDHP-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235 (564)
Q Consensus 157 ~~~~gv~~~~v~~~-~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h 235 (564)
...+|+++++++++ .++.+ ..+|+ +.|+..||.+||++++++++.+++ +|| |||+|
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r------~~~Yg------~~Dd~~RF~~F~~Aale~l~~~~~----------~PD-IIHaH 716 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWA------GCVYG------CRNDGERFGFFCHAALEFLLQSGF----------HPD-IIHCH 716 (1036)
T ss_pred EEECCcEEEEEeccccccCC------CCCCC------chhHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEEC
Confidence 88899999999976 35543 35665 789999999999999999988764 599 99999
Q ss_pred CCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHH
Q 008488 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (564)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 315 (564)
||++++++.+++..++..+ +.++|+|+|+|+..++. +.++.++.
T Consensus 717 DW~talva~llk~~~~~~~-~~~~p~V~TiHnl~~~~-----------------------------------n~lk~~l~ 760 (1036)
T PLN02316 717 DWSSAPVAWLFKDHYAHYG-LSKARVVFTIHNLEFGA-----------------------------------NHIGKAMA 760 (1036)
T ss_pred CChHHHHHHHHHHhhhhhc-cCCCCEEEEeCCcccch-----------------------------------hHHHHHHH
Confidence 9999999999988764433 35789999999866522 34667889
Q ss_pred hcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhC
Q 008488 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (564)
Q Consensus 316 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (564)
.+|.|+|||+.+++++... ..+.. +..++.+|+||||++.|+|.++++++.+|+..++.++|..++.++|+++|
T Consensus 761 ~AD~ViTVS~tya~EI~~~--~~l~~----~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lG 834 (1036)
T PLN02316 761 YADKATTVSPTYSREVSGN--SAIAP----HLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLG 834 (1036)
T ss_pred HCCEEEeCCHHHHHHHHhc--cCccc----ccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhC
Confidence 9999999999999998862 22221 12489999999999999999999999999999988899999999999999
Q ss_pred CCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC-hhhHHHHHHHHHh----CCCceEEEeccChHHH
Q 008488 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEIL----YPEKARGVAKFNIPLA 470 (564)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~L~~~----~~~~v~~~~~~~~~~~ 470 (564)
++. .+.|+|+|+|||.++||++.|++|++.+.+.+++|+|+|+|+ ..+++.+++++.+ +++++.+.+.+++.+.
T Consensus 835 L~~-~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~la 913 (1036)
T PLN02316 835 LKQ-ADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLS 913 (1036)
T ss_pred CCc-ccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHH
Confidence 984 356899999999999999999999999877789999999995 4467777777774 4567888888988888
Q ss_pred HHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC-------------cceeEeeccccccccCCCC
Q 008488 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-------------FTGFQMGSFSVDVIYSSPS 537 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g-------------~~G~l~~~~~~~~~~v~~~ 537 (564)
+.+|++||++|+||++|+||++++|||+||+|||++++||++|+|.|+ .|||+ +++.
T Consensus 914 h~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGfl----------f~~~ 983 (1036)
T PLN02316 914 HLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFS----------FDGA 983 (1036)
T ss_pred HHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEE----------eCCC
Confidence 899999999999999999999999999999999999999999999884 69999 6888
Q ss_pred CHHHHHhhcccCC
Q 008488 538 YNSRVIPRIPLDS 550 (564)
Q Consensus 538 d~~aLa~aI~~~~ 550 (564)
|+++|+.+|.+..
T Consensus 984 d~~aLa~AL~raL 996 (1036)
T PLN02316 984 DAAGVDYALNRAI 996 (1036)
T ss_pred CHHHHHHHHHHHH
Confidence 9988888776543
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=4.4e-58 Score=499.02 Aligned_cols=413 Identities=41% Similarity=0.676 Sum_probs=341.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCcccccc-CcceEEEEEeCCeeeeEEEEE--eeecC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAW-DTDVVIELKVGDKIEKVRFFH--CHKRG 161 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~g 161 (564)
|||+||++|++|+.++||+++++..|+++|+++||+|+|++|.|+...+.. +.....++ +..++.. ...+|
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g 74 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRL------DLFTVLFGHLEGDG 74 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEe------eeEEEEEEeEEcCC
Confidence 899999999999999999999999999999999999999999998654331 11111111 1133333 34589
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcch
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~ 241 (564)
+++++++++.++.+ ..+|+ +.++..||.+||++++++++.++. +|| |||+|+|++++
T Consensus 75 v~v~~v~~~~~~~~------~~~y~------~~d~~~r~~~f~~~~~~~~~~~~~----------~pD-iiH~h~w~~~~ 131 (466)
T PRK00654 75 VPVYLIDAPHLFDR------PSGYG------YPDNGERFAFFSWAAAEFAEGLDP----------RPD-IVHAHDWHTGL 131 (466)
T ss_pred ceEEEEeCHHHcCC------CCCCC------CcChHHHHHHHHHHHHHHHHhcCC----------CCc-eEEECCcHHHH
Confidence 99999999887775 46776 778999999999999999988764 599 99999999999
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceec
Q 008488 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (564)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (564)
++.+++..+ . ..+.++|+|+|+|+..+||.++...+..++++...... +... .....++++.++..||.|+
T Consensus 132 ~~~~l~~~~-~-~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~ad~vi 202 (466)
T PRK00654 132 IPALLKEKY-W-RGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHL----EGLE---FYGQISFLKAGLYYADRVT 202 (466)
T ss_pred HHHHHHHhh-h-ccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCc----hhhh---cCCcccHHHHHHHhcCcCe
Confidence 999998765 2 22347899999999999998876666666665543221 1110 1124688999999999999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhh--hccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (564)
+||+.+++++... .+|..++..+ +..++.+|+||||.+.|+|.+++.++..|+...+ +++..+++++++++|++.
T Consensus 203 tvS~~~~~ei~~~-~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~- 279 (466)
T PRK00654 203 TVSPTYAREITTP-EFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDL-EGKAENKRALQERFGLPD- 279 (466)
T ss_pred eeCHHHHHHhccc-cCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhh-hchHHHHHHHHHHhCCCC-
Confidence 9999999998752 2332222211 2358999999999999999999899999998875 588889999999999983
Q ss_pred CCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
++.++|+|+||+.++||++.+++|++++.+++++|+|+|+|++.+++.++++..+++.++.+...++.++++.+|++||+
T Consensus 280 ~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv 359 (466)
T PRK00654 280 DDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM 359 (466)
T ss_pred CCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE
Confidence 35689999999999999999999999997778999999999877888999999988877877788888888889999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC------cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g------~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|+||++|+||++++|||+||+|||++++||+.|+|.++ .||++ +++.|+++|+++|.+
T Consensus 360 ~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~l----------v~~~d~~~la~~i~~ 424 (466)
T PRK00654 360 FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFV----------FDDFNAEDLLRALRR 424 (466)
T ss_pred EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEE----------eCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 89999 689999999988865
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=2.2e-55 Score=479.27 Aligned_cols=426 Identities=44% Similarity=0.738 Sum_probs=353.0
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEE----EEEeCCeeeeEEEEEeeecC
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVI----ELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g 161 (564)
||+||++|++|+.++||+++++.+|+++|+++||+|+|++|.|+.....+...... .+........++..+...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999876654433222 23445556667788888899
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcch
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~ 241 (564)
++++++++|.+..+ ..+| +..+.+|.++..+|..|+++++++++.+.. +|| |||+|||++++
T Consensus 81 v~~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~----------~pD-viH~hd~~t~~ 142 (476)
T cd03791 81 VPVYFLDNPDYFDR------PGLY-DDSGYDYEDNAERFALFSRAALELLRRLGW----------KPD-IIHCHDWHTGL 142 (476)
T ss_pred ceEEEEcChHHcCC------CCCC-CccCCCCccHHHHHHHHHHHHHHHHHhcCC----------CCc-EEEECchHHHH
Confidence 99999999988775 3444 445566899999999999999999988754 599 99999999999
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceec
Q 008488 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (564)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (564)
++.+++..++. ..+.++|+|+|+|+..+++.++...+.....+..... .... .......++++.++..+|.|+
T Consensus 143 ~~~~l~~~~~~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~ad~v~ 215 (476)
T cd03791 143 VPALLKEKYAD-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELF---HIDG---LEFYGQVNFLKAGIVYADAVT 215 (476)
T ss_pred HHHHHHHhhcc-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchh---hhcc---cccCCcccHHHHHHHhcCcCe
Confidence 99999887643 3446899999999999999877554444333221000 0111 112335688999999999999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhhh--ccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (564)
+||+.+++++.+. .+|..++.++. ..++.+|+||+|.+.|.|..++.+...|+.. ....+..++..+++++|++.+
T Consensus 216 ~vS~~~~~~i~~~-~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~-~~~~~~~~k~~l~~~~g~~~~ 293 (476)
T cd03791 216 TVSPTYAREILTP-EFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSAD-DLEGKAENKAALQEELGLPVD 293 (476)
T ss_pred ecCHhHHHHhCCC-CCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCcc-ccccHHHHHHHHHHHcCCCcC
Confidence 9999999998752 23333333332 3589999999999999999988888888854 457889999999999999866
Q ss_pred CCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
++.++|+|+||+.++||++.+++|++++.+.+++|+|+|.|++.+++.++++..++++++.++..++.++++.++++||+
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv 373 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF 373 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE
Confidence 67899999999999999999999999998777999999999877888999998887778999999998888899999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCc------ceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF------TGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~------~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++||++|+||++++|||+||+|||++++||+.|+|.++. +|++ +++.|+++++++|.+
T Consensus 374 ~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~----------~~~~~~~~l~~~i~~ 438 (476)
T cd03791 374 FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFV----------FEGYNADALLAALRR 438 (476)
T ss_pred EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 9999 688899999888865
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=470.09 Aligned_cols=426 Identities=40% Similarity=0.633 Sum_probs=362.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcc--e--EEEEEeCCeeeeEEEEEeeec
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD--V--VIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 160 (564)
|||+++++|+.|..|+||++++++.|+++|++.||+|.|+.|.|+..++.|... . ..++..+.........+..+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 999999999999999999999999999999999999999999999777766543 1 122233333333333333333
Q ss_pred -CeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCc
Q 008488 161 -GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (564)
Q Consensus 161 -gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~ 239 (564)
|++.+++++|.++.|- ...+.++.|+.+||..|++++++.+..... ...|| |||+||||+
T Consensus 81 ~~v~~~lid~~~~f~r~----------~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~--------~~~pD-IvH~hDWqt 141 (487)
T COG0297 81 GGVDLYLIDNPALFKRP----------DSTLYGYYDNAERFAFFSLAAAELAPLGLI--------SWLPD-IVHAHDWQT 141 (487)
T ss_pred CCCcEEEecChhhcCcc----------ccccCCCCcHHHHHHHHHHHHHHHhhhcCC--------CCCCC-EEEeecHHH
Confidence 3999999988877751 122334899999999999999999866541 03599 999999999
Q ss_pred chHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcce
Q 008488 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 319 (564)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~ 319 (564)
+++|.+++..+. ....+|.|||+||..+||.|+......+++|..++..+... .+ ...+++|.++..||.
T Consensus 142 ~L~~~~lk~~~~---~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~-~~------~~~~~lK~gi~~ad~ 211 (487)
T COG0297 142 GLLPAYLKQRYR---SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLE-FY------GQISFLKGGLYYADA 211 (487)
T ss_pred HHHHHHHhhccc---ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceee-ec------CcchhhhhhheeccE
Confidence 999999998641 12589999999999999999966778888987665522211 11 236899999999999
Q ss_pred eccCCHHHHHHHHcCccCCCcchhhhhc--cceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCC
Q 008488 320 VLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 397 (564)
Q Consensus 320 vi~vS~~~~~~l~~~~~~g~~~~~~~~~--~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~ 397 (564)
|.+||+.+++++. .+.+|..++.+++. .++++|.||+|...|+|.+++++...|+..+.. +|+.+|..|+.++||+
T Consensus 212 vttVSptYa~Ei~-t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~-~k~~nk~~L~~~~gL~ 289 (487)
T COG0297 212 VTTVSPTYAGEIY-TPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLP-AKAENKVALQERLGLD 289 (487)
T ss_pred EEEECHHHHHhhc-cccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchh-hhHHHHHHHHHHhCCC
Confidence 9999999999998 56787776666654 478999999999999999999999999999886 5999999999999999
Q ss_pred CCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 398 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 398 ~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
.+.+.|+++++|||..|||+|.+++++..+.+..+++||+|+|++.+++.+..+++.+++++.....++.++.+.++++|
T Consensus 290 ~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~aga 369 (487)
T COG0297 290 VDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGA 369 (487)
T ss_pred CCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcC
Confidence 88888999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccccccc--------CcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--------GFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--------g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|++++||++||||+++++||++||++|+..+||++|+|.+ ..|||+| .+.++++|+.+|.++
T Consensus 370 D~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f----------~~~~~~~l~~al~rA 439 (487)
T COG0297 370 DVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLF----------LQTNPDHLANALRRA 439 (487)
T ss_pred CEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEE----------ecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 5899996 555999999998866
Q ss_pred Cc
Q 008488 550 ST 551 (564)
Q Consensus 550 ~~ 551 (564)
-.
T Consensus 440 ~~ 441 (487)
T COG0297 440 LV 441 (487)
T ss_pred HH
Confidence 53
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=3.2e-37 Score=339.49 Aligned_cols=438 Identities=17% Similarity=0.209 Sum_probs=332.2
Q ss_pred EEEEEeecc-----CccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc--cc-------------cccCc---------
Q 008488 87 ILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ--YK-------------DAWDT--------- 137 (564)
Q Consensus 87 Il~vs~~~~-----P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~--~~-------------~~~~~--------- 137 (564)
|+++|.||. | ...||+|........+++..|....-++-.|.+ +. +.|+.
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 466776654 5 478999999999999999999999988876532 11 11211
Q ss_pred -----ceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccccccCCCCC-cccCCCCCCCCcchhHHHHHHHHHHHHhh
Q 008488 138 -----DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLRFSLLCQAALEAP 211 (564)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~-~iy~~~~~~~~~~~~~r~~~~~~~~l~~~ 211 (564)
....++.+......++.+....+++++++++++..-...|.+... .+|++ |..++..++.+|+.+.++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~----D~~~R~~Qe~fl~~a~l~~l 155 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG----DKEMRIAQEIVLGIGGVRAL 155 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 123566666667778888887789999999988521112222222 46763 23455556699999999999
Q ss_pred hhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCC-----C--CCCeEEEEEccCCcCcc--ccccccc--
Q 008488 212 RILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAFEDFG-- 280 (564)
Q Consensus 212 ~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~-----~--~~~kvv~tiH~~~~~~~--~~~~~~~-- 280 (564)
+.+++ .|| |||+||||+++++..+.+.....+. + ...+++||+|++.+||. |+...+.
T Consensus 156 ~~l~~----------~pd-viH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~ 224 (601)
T TIGR02094 156 RALGI----------DPD-VYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKY 224 (601)
T ss_pred HHcCC----------Cce-EEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHH
Confidence 98875 499 9999999999999986443111110 0 14679999999999997 8866663
Q ss_pred ------cCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhh--hccceEE
Q 008488 281 ------LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKG 352 (564)
Q Consensus 281 ------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~~ 352 (564)
.++++........... +-.....++++.++..||.|.+||+-+.+.... .++ ++...+ +..++..
T Consensus 225 ~~~~~~~~gl~~~~~~~~~~~~----~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~--l~~-~l~~~~~~~~~~i~g 297 (601)
T TIGR02094 225 FGDYAANLGLPREQLLALGREN----PDDPEPFNMTVLALRLSRIANGVSKLHGEVSRK--MWQ-FLYPGYEEEEVPIGY 297 (601)
T ss_pred hhhhhhHhCCCHHHHHhhhhhc----cCccCceeHHHHHHHhCCeeeeecHHHHHHHHH--HHH-hhhhhcccccCCccc
Confidence 3555554433222111 000134799999999999999999988873221 011 000001 1236899
Q ss_pred ecCCcccCCCCCCCccccccccCcch---------------------hhhccHHHHHHHHH-------------------
Q 008488 353 IVNGMDVQEWNPLTDKYIGVKYDAST---------------------VMDAKPLLKEALQA------------------- 392 (564)
Q Consensus 353 I~NGid~~~~~p~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~------------------- 392 (564)
|.||||...|.|.+++.|..+|+.++ +.+.|..+|.+|++
T Consensus 298 ItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~ 377 (601)
T TIGR02094 298 VTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAI 377 (601)
T ss_pred eeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchh
Confidence 99999999999999999999999988 45899999999988
Q ss_pred --HhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCChh------hHHHHHHHHHh--CC
Q 008488 393 --EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKP------MEKQLEQLEIL--YP 456 (564)
Q Consensus 393 --~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~~~------~~~~l~~L~~~--~~ 456 (564)
++|++.+++.+++++++|+.++||+++++++++.+.+ .++++|++|++++. +++.+.+++.. ++
T Consensus 378 ~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~ 457 (601)
T TIGR02094 378 LMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFR 457 (601)
T ss_pred hhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCC
Confidence 6888888899999999999999999999999888853 47999999999854 99999999988 78
Q ss_pred CceEEEeccChHHHHHHHHhcCEEEE-cCC-CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccc--cc
Q 008488 457 EKARGVAKFNIPLAHMIIAGADFILI-PSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD--VI 532 (564)
Q Consensus 457 ~~v~~~~~~~~~~~~~il~~ADv~v~-PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~--~~ 532 (564)
+++.++..|+.++++.++++||++++ ||+ +|+||++.+-||..|.+.+++-.|++.|.. ++.|||.|++.... .+
T Consensus 458 ~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 458 GRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEE 536 (601)
T ss_pred CCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccc
Confidence 89999999999999999999999999 999 999999999999999999999999999987 67899999853321 22
Q ss_pred cCCCCCHHHHHhhccc
Q 008488 533 YSSPSYNSRVIPRIPL 548 (564)
Q Consensus 533 ~v~~~d~~aLa~aI~~ 548 (564)
..+..|+++|.++|++
T Consensus 537 ~~d~~da~~l~~~L~~ 552 (601)
T TIGR02094 537 EQDRLDAEALYDLLEN 552 (601)
T ss_pred cccCCCHHHHHHHHHH
Confidence 2345677788777754
No 10
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.3e-36 Score=344.88 Aligned_cols=411 Identities=17% Similarity=0.121 Sum_probs=261.6
Q ss_pred CCCceEEEEEeeccC---------ccccchHHHHhhhhHHHHHhCC--CeEEEEeeCCCccccccCcceEEEEEeCCeee
Q 008488 82 GVGLNILFVGTEVAP---------WSKTGGLGDVLGGLPPALAANG--HRVMTIAPRYDQYKDAWDTDVVIELKVGDKIE 150 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P---------~~~~GG~~~~~~~La~aLa~~G--h~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~ 150 (564)
.++|.|++|+-.-.| ...+||...|+.+|+++|+++| |+|.|+|.......-.|+.....+.--....+
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 357999999976443 1368999999999999999998 89999998754322223322222111000000
Q ss_pred eEEEEEeeecCeeEEEEeCC---cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhh----ccCCCCCCC
Q 008488 151 KVRFFHCHKRGVDRVFVDHP---WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL----NLNSNKYFS 223 (564)
Q Consensus 151 ~~~~~~~~~~gv~~~~v~~~---~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l----~~~~~~~~~ 223 (564)
.........+|+.+++++.. .++.| ..-+-.+..|...+++.++.+ ..+ +.
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~K------------------e~L~~~l~ef~d~~l~~~~~~~~~~~~~----~~ 304 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPK------------------EELWPYIPEFVDGALSHIVNMSKVLGEQ----IG 304 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCH------------------HHHHHHHHHHHHHHHHHHHhhhhhhhhh----hc
Confidence 00111123468888887632 12332 111233445666666654431 100 00
Q ss_pred -C-CCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCC-
Q 008488 224 -G-PYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK- 300 (564)
Q Consensus 224 -~-~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 300 (564)
+ +..|| |||+|+|.++.++..++... ++|+|+|.|.+.....- .++....... +..+.
T Consensus 305 ~~~~~~pD-vIHaHyw~sG~aa~~L~~~l-------gVP~V~T~HSLgr~K~~-----~ll~~g~~~~------~~~~~~ 365 (1050)
T TIGR02468 305 SGHPVWPY-VIHGHYADAGDSAALLSGAL-------NVPMVLTGHSLGRDKLE-----QLLKQGRMSK------EEINST 365 (1050)
T ss_pred cccCCCCC-EEEECcchHHHHHHHHHHhh-------CCCEEEECccchhhhhh-----hhcccccccc------cccccc
Confidence 0 12399 99999999999999999875 89999999965321100 0000000000 00000
Q ss_pred CccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcch--hhhh-------------ccceEEecCCcccCCCCCC
Q 008488 301 PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD--NIIR-------------KTGIKGIVNGMDVQEWNPL 365 (564)
Q Consensus 301 ~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~--~~~~-------------~~~i~~I~NGid~~~~~p~ 365 (564)
......+..++..+..||.||++|+..++++...|. ++++. ..++ ..++.+||||||++.|.|.
T Consensus 366 y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~-~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~ 444 (1050)
T TIGR02468 366 YKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYD-GFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPH 444 (1050)
T ss_pred cchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc-cCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCC
Confidence 001234556788899999999999999988765321 12210 0000 1288999999999999985
Q ss_pred CccccccccCcc-hhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc----CCeEEEEEeCC
Q 008488 366 TDKYIGVKYDAS-TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTG 440 (564)
Q Consensus 366 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~----~~v~lvIvG~g 440 (564)
....-....... ......+.....++..+ .+ ++.++|+|+||+.++||++.||+|+..+.+ +++. +|+|.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~-~~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~g 520 (1050)
T TIGR02468 445 DGDMDGETEGNEEHPAKPDPPIWSEIMRFF-TN--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNR 520 (1050)
T ss_pred CccccchhcccccccccccchhhHHHHhhc-cc--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecC
Confidence 321000000000 00000111122344333 32 355899999999999999999999999863 3565 466876
Q ss_pred Ch---------hhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhc----CEEEEcCCCCCCcHHHHHHHHcCCcEEE
Q 008488 441 KK---------PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIV 505 (564)
Q Consensus 441 ~~---------~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~A----Dv~v~PS~~E~~gl~~lEAma~G~PvI~ 505 (564)
+. ...+.++.+..++. ++|.+.+..+.+++..+|+.| |+||+||++|+||++++|||+||+|||+
T Consensus 521 dd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA 600 (1050)
T TIGR02468 521 DDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA 600 (1050)
T ss_pred chhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE
Confidence 42 12345566666654 568777777888888999988 6999999999999999999999999999
Q ss_pred cCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 506 ASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 506 s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+.||+.|++.++.+|++ ++|.|+++||++|..
T Consensus 601 SdvGG~~EII~~g~nGlL----------VdP~D~eaLA~AL~~ 633 (1050)
T TIGR02468 601 TKNGGPVDIHRVLDNGLL----------VDPHDQQAIADALLK 633 (1050)
T ss_pred eCCCCcHHHhccCCcEEE----------ECCCCHHHHHHHHHH
Confidence 999999999999999999 799999999998754
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.2e-35 Score=317.55 Aligned_cols=357 Identities=18% Similarity=0.144 Sum_probs=231.5
Q ss_pred ccchHHHHhhhhHHHHHhCCC--eEEEEeeCCCccc--cccCcceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccc
Q 008488 99 KTGGLGDVLGGLPPALAANGH--RVMTIAPRYDQYK--DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLA 174 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh--~V~vitp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~ 174 (564)
..||++.++.+|+++|+++|| +|.|+|..++... ..+. .-.....+|+++++++...
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~----------------~~~~~~~~gv~v~r~~~~~--- 84 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYA----------------QPIERIAPGARIVRLPFGP--- 84 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccC----------------CCeeEeCCCcEEEEecCCC---
Confidence 479999999999999999997 9999997643210 1000 0012334788888875321
Q ss_pred cccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCC
Q 008488 175 KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKG 254 (564)
Q Consensus 175 ~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~ 254 (564)
+. +.. ..+-...+..+...+.+.+++.. .+|| |||+|.|..+++...+++.
T Consensus 85 ~~--------~~~-----~~~~~~~~~~~~~~l~~~~~~~~----------~~~D-vIH~h~~~~~~~~~~~~~~----- 135 (439)
T TIGR02472 85 RR--------YLR-----KELLWPYLDELADNLLQHLRQQG----------HLPD-LIHAHYADAGYVGARLSRL----- 135 (439)
T ss_pred CC--------CcC-----hhhhhhhHHHHHHHHHHHHHHcC----------CCCC-EEEEcchhHHHHHHHHHHH-----
Confidence 00 000 00011112334455555555432 1499 9999999888887777665
Q ss_pred CCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcC
Q 008488 255 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG 334 (564)
Q Consensus 255 ~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~ 334 (564)
.++|+|+|.|+...... ..+...++... .+ ...+ .......+++..++.+|.|+++|+...++....
T Consensus 136 --~~~p~V~t~H~~~~~~~---~~~~~~~~~~~---~~--~~~~---~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 202 (439)
T TIGR02472 136 --LGVPLIFTGHSLGREKR---RRLLAAGLKPQ---QI--EKQY---NISRRIEAEEETLAHASLVITSTHQEIEEQYAL 202 (439)
T ss_pred --hCCCEEEecccccchhh---hhcccCCCChh---hh--hhhc---chHHHHHHHHHHHHhCCEEEECCHHHHHHHHHh
Confidence 37899999996432100 00000000000 00 0000 001123456778899999999997655443221
Q ss_pred ccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccc
Q 008488 335 EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQ 414 (564)
Q Consensus 335 ~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~ 414 (564)
..+++.+ ++.+||||+|++.|.|.... +.....+..+ ++++.+. +.++|+|+||+.+.
T Consensus 203 -~~~~~~~------ki~vIpnGvd~~~f~~~~~~------------~~~~~~~~~~-~~~~~~~--~~~~i~~vGrl~~~ 260 (439)
T TIGR02472 203 -YDSYQPE------RMQVIPPGVDLSRFYPPQSS------------EETSEIDNLL-APFLKDP--EKPPILAISRPDRR 260 (439)
T ss_pred -ccCCCcc------ceEEECCCcChhhcCCCCcc------------ccchhHHHHH-Hhhcccc--CCcEEEEEcCCccc
Confidence 1244433 89999999999998875321 0111112223 3334432 34799999999999
Q ss_pred cCHHHHHHHHHhccc--CCeEEE-EEeCCCh--hh-------HHHHHHHHHhC--CCceEEEeccChHHHHHHHHhc---
Q 008488 415 KGSDILAAAIPHFIK--ENVQII-VLGTGKK--PM-------EKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGA--- 477 (564)
Q Consensus 415 KG~d~ll~A~~~l~~--~~v~lv-IvG~g~~--~~-------~~~l~~L~~~~--~~~v~~~~~~~~~~~~~il~~A--- 477 (564)
||++.+++|++.+.. .+.+++ |+|+|+. .+ .+.+.++..++ .+++.+.+.++.+++..+|+.|
T Consensus 261 Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~ 340 (439)
T TIGR02472 261 KNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARS 340 (439)
T ss_pred CCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence 999999999986422 234443 5687652 11 12233344443 3678877777888888999987
Q ss_pred -CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 478 -DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 478 -Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|++|+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|++ ++++|+++|+++|.+
T Consensus 341 ~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~l----------v~~~d~~~la~~i~~ 402 (439)
T TIGR02472 341 RGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLL----------VDVLDLEAIASALED 402 (439)
T ss_pred CCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 799999999998854
No 12
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=3.1e-35 Score=327.88 Aligned_cols=388 Identities=15% Similarity=0.153 Sum_probs=248.0
Q ss_pred CCceEEEEEeecc---Ccc----ccchHHHHhhhhHHHH--------HhCCC----eEEEEeeCCCccccccCcceEEEE
Q 008488 83 VGLNILFVGTEVA---PWS----KTGGLGDVLGGLPPAL--------AANGH----RVMTIAPRYDQYKDAWDTDVVIEL 143 (564)
Q Consensus 83 ~~MkIl~vs~~~~---P~~----~~GG~~~~~~~La~aL--------a~~Gh----~V~vitp~~~~~~~~~~~~~~~~~ 143 (564)
+.|||++||...+ |.. .+||...++.+|+++| +++|| +|.|+|...+.... .+..+..+.
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~ 332 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEK 332 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-ccccccccc
Confidence 3699999998862 211 3799999999999985 68999 77799987532111 000000000
Q ss_pred EeCCeeeeEEEEEeeecCeeEEEEeCC--------cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhh-hh
Q 008488 144 KVGDKIEKVRFFHCHKRGVDRVFVDHP--------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR-IL 214 (564)
Q Consensus 144 ~~~~~~~~~~~~~~~~~gv~~~~v~~~--------~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~-~l 214 (564)
. .-.+|+.+++++.. .|.+| ..+ +-.+..|...+.+.+. ..
T Consensus 333 ~------------~~~~~~~I~rvp~g~~~~~~~~~~i~k------~~l------------~p~l~~f~~~~~~~~~~~~ 382 (784)
T TIGR02470 333 V------------YGTEHAWILRVPFRTENGIILRNWISR------FEI------------WPYLETFAEDAEKEILAEL 382 (784)
T ss_pred c------------cCCCceEEEEecCCCCcccccccccCH------HHH------------HHHHHHHHHHHHHHHHHhc
Confidence 0 01235556555421 12222 111 1123345555555433 22
Q ss_pred ccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCccccccccc
Q 008488 215 NLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDF 294 (564)
Q Consensus 215 ~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (564)
+. +|| |||+|.|.+++++..++... ++|.++|.|......... ...........+..
T Consensus 383 ~~----------~pD-lIHahy~d~glva~lla~~l-------gVP~v~t~HsL~~~K~~~-~g~~~~~~e~~~~~---- 439 (784)
T TIGR02470 383 QG----------KPD-LIIGNYSDGNLVASLLARKL-------GVTQCTIAHALEKTKYPD-SDIYWQEFEDKYHF---- 439 (784)
T ss_pred CC----------CCC-EEEECCCchHHHHHHHHHhc-------CCCEEEECCcchhhcccc-cccccccchhHHHh----
Confidence 22 599 99999999999999888874 899999999764321110 00000000000000
Q ss_pred ccCCCCCccCchhHHHHHHHHhcceeccCCHHHHH----HHHc---Cc------cC----CCcchhhhhccceEEecCCc
Q 008488 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQ----ELVS---GE------DK----GVELDNIIRKTGIKGIVNGM 357 (564)
Q Consensus 295 ~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~----~l~~---~~------~~----g~~~~~~~~~~~i~~I~NGi 357 (564)
...+.-...++..||.||+.|..... .+.+ .. .+ |++. ...++.+|++|+
T Consensus 440 ---------~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~----~~~Ki~VVpPGV 506 (784)
T TIGR02470 440 ---------SCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDV----FDPKFNIVSPGA 506 (784)
T ss_pred ---------hhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccC----CcCCeEEECCCc
Confidence 00111133567889999999976533 2211 00 11 2221 124889999999
Q ss_pred ccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEE
Q 008488 358 DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQII 435 (564)
Q Consensus 358 d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lv 435 (564)
|...|.|.+.+.-.. -....-.+....++.+.++++|+..++++|+|+++||+.+.||++.|++|+.++.. ++++|+
T Consensus 507 D~~iF~P~~~~~~r~-~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LV 585 (784)
T TIGR02470 507 DESIYFPYSDKEKRL-TNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLV 585 (784)
T ss_pred ChhhcCCCCchhhhh-hhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEE
Confidence 999888765310000 00000001112245667788998666778999999999999999999999987643 579999
Q ss_pred EEeCCCh----------hhHHHHHHHHHhCC--CceEEEecc-ChHHHHHHH---H-hcCEEEEcCCCCCCcHHHHHHHH
Q 008488 436 VLGTGKK----------PMEKQLEQLEILYP--EKARGVAKF-NIPLAHMII---A-GADFILIPSRFEPCGLIQLHAMR 498 (564)
Q Consensus 436 IvG~g~~----------~~~~~l~~L~~~~~--~~v~~~~~~-~~~~~~~il---~-~ADv~v~PS~~E~~gl~~lEAma 498 (564)
|+|++.. ...+.+.++..+++ ++|.+.+.. +......++ + ++|+||+||++|+||++++|||+
T Consensus 586 IVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMA 665 (784)
T TIGR02470 586 VVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMT 665 (784)
T ss_pred EEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHH
Confidence 9998642 13345666777765 678877754 333333333 3 46899999999999999999999
Q ss_pred cCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 499 YGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 499 ~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
||+|||+|++||+.|+|.++.|||+ ++|.|++++|++|.+
T Consensus 666 cGlPVVAT~~GG~~EiV~dg~tGfL----------Vdp~D~eaLA~aL~~ 705 (784)
T TIGR02470 666 CGLPTFATRFGGPLEIIQDGVSGFH----------IDPYHGEEAAEKIVD 705 (784)
T ss_pred cCCCEEEcCCCCHHHHhcCCCcEEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999 799999999998764
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.7e-35 Score=312.38 Aligned_cols=349 Identities=20% Similarity=0.267 Sum_probs=245.4
Q ss_pred EEEEEeeccCcc-----ccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecC
Q 008488 87 ILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 87 Il~vs~~~~P~~-----~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (564)
|++++....|+. ..||.+.++.+|+++|+++||+|+++++........ .....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------~~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP--------------------VVEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC--------------------ccccCCC
Confidence 567777766642 259999999999999999999999999863211110 0112357
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHH-HhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAAL-EAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l-~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
+.++.+....+... ........+..|....+ .++++.. .+|| |||+|+|.++
T Consensus 61 ~~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~D-iih~h~~~~~ 113 (405)
T TIGR03449 61 VRVRNVVAGPYEGL----------------DKEDLPTQLCAFTGGVLRAEARHEP----------GYYD-LIHSHYWLSG 113 (405)
T ss_pred cEEEEecCCCcccC----------------CHHHHHHHHHHHHHHHHHHHhhccC----------CCCC-eEEechHHHH
Confidence 77776643221110 00000111112222233 2222221 2599 8999998887
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
+++.++++. .++|+|+|+|+...... ..+. .. ..+.......+.+..+..+|.+
T Consensus 114 ~~~~~~~~~-------~~~p~v~t~h~~~~~~~--------~~~~----------~~-~~~~~~~~~~~e~~~~~~~d~v 167 (405)
T TIGR03449 114 QVGWLLRDR-------WGVPLVHTAHTLAAVKN--------AALA----------DG-DTPEPEARRIGEQQLVDNADRL 167 (405)
T ss_pred HHHHHHHHh-------cCCCEEEeccchHHHHH--------Hhcc----------CC-CCCchHHHHHHHHHHHHhcCeE
Confidence 777776654 37899999996432000 0000 00 0000001122345678899999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (564)
+++|+...+.+.. .++.+.+ ++.+|+||+|.+.|.|.. +...+.+++++.
T Consensus 168 i~~s~~~~~~~~~--~~~~~~~------ki~vi~ngvd~~~~~~~~--------------------~~~~~~~~~~~~-- 217 (405)
T TIGR03449 168 IANTDEEARDLVR--HYDADPD------RIDVVAPGADLERFRPGD--------------------RATERARLGLPL-- 217 (405)
T ss_pred EECCHHHHHHHHH--HcCCChh------hEEEECCCcCHHHcCCCc--------------------HHHHHHhcCCCC--
Confidence 9999998888765 3454433 899999999998887643 445677888864
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhccc--CC--eEEEEEeCCCh---hhHHHHHHHHHhCC--CceEEEeccChHHHH
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN--VQIIVLGTGKK---PMEKQLEQLEILYP--EKARGVAKFNIPLAH 471 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~--v~lvIvG~g~~---~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~ 471 (564)
+.++|+|+||+.+.||++.+++|++++.+ ++ ++|+|+|++.. ...+.++++.+.++ +++.+.+..+.+++.
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 297 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELV 297 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHH
Confidence 44899999999999999999999998855 44 99999996421 24556666666654 468888888888899
Q ss_pred HHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 472 ~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
.+|+.||++++||..|+||++++|||++|+|||+++.||+.|++.++.+|++ ++++|+++++++|.+
T Consensus 298 ~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~----------~~~~d~~~la~~i~~ 364 (405)
T TIGR03449 298 HVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLL----------VDGHDPADWADALAR 364 (405)
T ss_pred HHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEE----------CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 788999999988754
No 14
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=3.7e-35 Score=313.04 Aligned_cols=323 Identities=19% Similarity=0.236 Sum_probs=227.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..|.|. .||.+.++..|+++|+++||+|.|+++.++..... ....+|+.++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---------------------~~~~~~i~v~ 57 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI---------------------RYLTNGLKVY 57 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc---------------------ccccCceeEE
Confidence 799999999996 89999999999999999999999999864321110 0112466666
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHH--
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP-- 243 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~-- 243 (564)
.++...+... ..+ . ++......+.+.+++ .+|| |||+|++...+..
T Consensus 58 ~~p~~~~~~~------~~~---------~----~~~~~~~~l~~~~~~------------~~~D-iIh~~~~~~~~~~~~ 105 (398)
T cd03796 58 YLPFVVFYNQ------STL---------P----TFFGTFPLLRNILIR------------ERIT-IVHGHQAFSALAHEA 105 (398)
T ss_pred EecceeccCC------ccc---------c----chhhhHHHHHHHHHh------------cCCC-EEEECCCCchHHHHH
Confidence 6543211110 000 0 000111122222222 2599 9999987655432
Q ss_pred HHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccC
Q 008488 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (564)
Q Consensus 244 ~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 323 (564)
..+.+. .++|+|+|.|+... ..+ .. ......+++..++.+|.++++
T Consensus 106 ~~~~~~-------~~~~~v~t~h~~~~-----~~~--------~~--------------~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 106 LLHART-------MGLKTVFTDHSLFG-----FAD--------AS--------------SIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred HHHhhh-------cCCcEEEEeccccc-----ccc--------hh--------------hHHhhHHHHHhhccCCEEEEe
Confidence 222322 47899999995321 000 00 000123455667899999999
Q ss_pred CHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCcc
Q 008488 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (564)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (564)
|+...+.+.. ..+++. .++.+||||+|.+.|.|...+ .+++.+
T Consensus 152 s~~~~~~~~~--~~~~~~------~k~~vi~ngvd~~~f~~~~~~-----------------------------~~~~~~ 194 (398)
T cd03796 152 SHTSKENTVL--RASLDP------ERVSVIPNAVDSSDFTPDPSK-----------------------------RDNDKI 194 (398)
T ss_pred cHhHhhHHHH--HhCCCh------hhEEEEcCccCHHHcCCCccc-----------------------------CCCCce
Confidence 9999876543 134433 389999999999888765421 123557
Q ss_pred EEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv 479 (564)
+++|+||+.++||++.+++|++.+.+ ++++++|+|+|+ ..+.++++..+++ +++.+.+..+.+++..+++.||+
T Consensus 195 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~ 272 (398)
T cd03796 195 TIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHI 272 (398)
T ss_pred EEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 99999999999999999999998865 789999999987 3455666655543 56888888888899999999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++||.+|+||++++|||+||+|||+++.||..|++.++.. ++ ++ .|+++++++|.+
T Consensus 273 ~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~-~~----------~~-~~~~~l~~~l~~ 329 (398)
T cd03796 273 FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMI-LL----------AE-PDVESIVRKLEE 329 (398)
T ss_pred EEeCChhhccCHHHHHHHHcCCCEEECCCCCchhheeCCce-ee----------cC-CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643 32 34 478888888764
No 15
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.7e-35 Score=312.89 Aligned_cols=358 Identities=19% Similarity=0.213 Sum_probs=245.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++|+..|+|. .||.+.++.+|+++|.++||+|+|+|+.. .++. |... ..........+..+|+++
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~-~~~~-~~~~--------~~~~~~~~~~~~~~~i~v 68 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPP-YYPQ-WRVG--------EGYSAWRYRRESEGGVTV 68 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCC-CCCC-CCCC--------cccccccceeeecCCeEE
Confidence 8999999988886 79999999999999999999999999762 1211 1100 000001122233578888
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHh-hhhhccCCCCCCCCCCCCCEEEEEcCCCc--ch
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHT--SL 241 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~-~~~l~~~~~~~~~~~~~pDvIih~h~~~~--~~ 241 (564)
++++....... . ..........|....... .+.+. .+|| |||+|.+.. +.
T Consensus 69 ~r~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~D-iv~~~~p~~~~~~ 121 (412)
T PRK10307 69 WRCPLYVPKQP-------------S---GLKRLLHLGSFALSSFFPLLAQRR----------WRPD-RVIGVVPTLFCAP 121 (412)
T ss_pred EEccccCCCCc-------------c---HHHHHHHHHHHHHHHHHHHhhccC----------CCCC-EEEEeCCcHHHHH
Confidence 87753211000 0 001111122222222222 22221 2599 899987442 23
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceec
Q 008488 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (564)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (564)
....+++. .++|+++++|+...+..+ ..+.. .. ..+......+++..++.+|.|+
T Consensus 122 ~~~~~~~~-------~~~~~v~~~~d~~~~~~~------~~~~~---~~---------~~~~~~~~~~~~~~~~~ad~ii 176 (412)
T PRK10307 122 GARLLARL-------SGARTWLHIQDYEVDAAF------GLGLL---KG---------GKVARLATAFERSLLRRFDNVS 176 (412)
T ss_pred HHHHHHHh-------hCCCEEEEeccCCHHHHH------HhCCc---cC---------cHHHHHHHHHHHHHHhhCCEEE
Confidence 33445544 378999999964321100 00000 00 0000112235667788999999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (564)
++|+..++.+.+ ++++.+ ++.+||||+|.+.|.|.... ....++++++++. +
T Consensus 177 ~~S~~~~~~~~~---~~~~~~------~i~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~~~--~ 228 (412)
T PRK10307 177 TISRSMMNKARE---KGVAAE------KVIFFPNWSEVARFQPVADA-----------------DVDALRAQLGLPD--G 228 (412)
T ss_pred ecCHHHHHHHHH---cCCCcc------cEEEECCCcCHhhcCCCCcc-----------------chHHHHHHcCCCC--C
Confidence 999999999876 455433 89999999999888764321 1345778888864 4
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCC-CceEEEeccChHHHHHHHHhcCE
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~-~~v~~~~~~~~~~~~~il~~ADv 479 (564)
.++|+|+|++.+.||++.|++|++++.+ ++++|+|+|+|+ .++.++++...++ .++.+.+..+.+++..++++||+
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi 306 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGG--GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADC 306 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCCh--hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCE
Confidence 4799999999999999999999998865 689999999997 4566666666543 36888888888899999999999
Q ss_pred EEEcCCCCC----CcHHHHHHHHcCCcEEEcCccc--cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEP----CGLIQLHAMRYGTVPIVASTGG--LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~----~gl~~lEAma~G~PvI~s~~gg--~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++||..|+ +|.+++|||+||+|||+|+.|| +.|++. .+|++ ++++|+++++++|.+
T Consensus 307 ~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~----------~~~~d~~~la~~i~~ 369 (412)
T PRK10307 307 HLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVC----------VEPESVEALVAAIAA 369 (412)
T ss_pred eEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEE----------eCCCCHHHHHHHHHH
Confidence 999999998 5777999999999999999877 468887 59998 789999999998853
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.8e-34 Score=305.45 Aligned_cols=336 Identities=21% Similarity=0.298 Sum_probs=234.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++|+..|+|. ..||.+.++.+|+++|+++ |+|.|++...+.. ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999987774 5699999999999999987 7888777542210 1134454
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.+..+..... +... +..+...+ .... . ..++| |||+|+|..++.+.
T Consensus 53 ~~~~~~~~~~~-----------------~~~~---~~~~~~~~-~~~~--~---------~~~~d-ivh~~~~~~~~~~~ 99 (388)
T TIGR02149 53 KGYRPWSELKE-----------------ANKA---LGTFSVDL-AMAN--D---------PVDAD-VVHSHTWYTFLAGH 99 (388)
T ss_pred EEecChhhccc-----------------hhhh---hhhhhHHH-HHhh--C---------CCCCC-eEeecchhhhhHHH
Confidence 44321110000 0000 00011111 1111 1 12599 99999988776666
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
.+++. .++|+|+++|+......+. . .... .++ .....+.+..++.+|.++++|
T Consensus 100 ~~~~~-------~~~p~v~~~h~~~~~~~~~-----~----~~~~------~~~-----~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 100 LAKKL-------YDKPLVVTAHSLEPLRPWK-----E----EQLG------GGY-----KLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HHHHh-------cCCCEEEEeeccccccccc-----c----cccc------cch-----hHHHHHHHHHHhhCCEEEEcc
Confidence 55443 4889999999654311110 0 0000 000 011234566788999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+.+++.+.+.+ .+++ ..++.+|+||+|...|.|.. +..++++++++. +.++
T Consensus 153 ~~~~~~~~~~~-~~~~------~~~i~vi~ng~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~ 203 (388)
T TIGR02149 153 GGMREDILKYY-PDLD------PEKVHVIYNGIDTKEYKPDD--------------------GNVVLDRYGIDR--SRPY 203 (388)
T ss_pred HHHHHHHHHHc-CCCC------cceEEEecCCCChhhcCCCc--------------------hHHHHHHhCCCC--CceE
Confidence 99999887621 1333 23799999999998887643 456788889864 4489
Q ss_pred EEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC--hhhHHHHHHHHHhCC---CceEEEec-cChHHHHHHHHhcC
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYP---EKARGVAK-FNIPLAHMIIAGAD 478 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~--~~~~~~l~~L~~~~~---~~v~~~~~-~~~~~~~~il~~AD 478 (564)
|+|+||+.+.||++.+++|++++. ++++++++|+|+ +++.+.++++...++ +++.+++. .+.+++..+|++||
T Consensus 204 i~~~Grl~~~Kg~~~li~a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aD 282 (388)
T TIGR02149 204 ILFVGRITRQKGVPHLLDAVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAE 282 (388)
T ss_pred EEEEcccccccCHHHHHHHHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCC
Confidence 999999999999999999999884 578899988765 334556666554443 23666554 58888899999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCH------HHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYN------SRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~------~aLa~aI~~ 548 (564)
++|+||.+|++|++++|||+||+|||+++.||..|++.++.+|++ ++++|+ ++++++|.+
T Consensus 283 v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~----------~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 283 VFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFL----------VPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred EEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEE----------cCCCCCcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 677777 888887743
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.5e-34 Score=314.60 Aligned_cols=337 Identities=18% Similarity=0.249 Sum_probs=232.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (564)
.++|||+++... .|+...||.+.++.+|+++|.++||+|+++++..+. ... ..|
T Consensus 56 ~~~mrI~~~~~~-~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~------------------------~~g 109 (465)
T PLN02871 56 SRPRRIALFVEP-SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE------------------------FHG 109 (465)
T ss_pred CCCceEEEEECC-cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc------------------------ccC
Confidence 578999999854 343568999999999999999999999999986321 110 012
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc-
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS- 240 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~- 240 (564)
+.++.+.. +.. ..|.. ....+ .+...+.+.+++. +|| |||+|+....
T Consensus 110 ~~v~~~~~--~~~--------~~~~~--------~~~~~-~~~~~l~~~i~~~------------kpD-iIh~~~~~~~~ 157 (465)
T PLN02871 110 AKVIGSWS--FPC--------PFYQK--------VPLSL-ALSPRIISEVARF------------KPD-LIHASSPGIMV 157 (465)
T ss_pred ceeeccCC--cCC--------ccCCC--------ceeec-cCCHHHHHHHHhC------------CCC-EEEECCCchhH
Confidence 22221110 000 00000 00000 0001222333332 599 8999975432
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
+....+.+. .++|+|++.|+.... +. ...... . +......+++...+.+|.+
T Consensus 158 ~~~~~~ak~-------~~ip~V~~~h~~~~~--~~----~~~~~~-----------~----~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 158 FGALFYAKL-------LCVPLVMSYHTHVPV--YI----PRYTFS-----------W----LVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred HHHHHHHHH-------hCCCEEEEEecCchh--hh----hcccch-----------h----hHHHHHHHHHHHHhhCCEE
Confidence 233333333 378999999953210 00 000000 0 0001123456667899999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (564)
+++|+..++.+.. .+.. ...++.+|+||+|.+.|.|... ...++.++.... +
T Consensus 210 i~~S~~~~~~l~~---~~~~-----~~~kv~vi~nGvd~~~f~p~~~-------------------~~~~~~~~~~~~-~ 261 (465)
T PLN02871 210 LVTSPALGKELEA---AGVT-----AANRIRVWNKGVDSESFHPRFR-------------------SEEMRARLSGGE-P 261 (465)
T ss_pred EECCHHHHHHHHH---cCCC-----CcCeEEEeCCccCccccCCccc-------------------cHHHHHHhcCCC-C
Confidence 9999999999886 3321 1238999999999998877542 223444443221 2
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
+.++|+|+||+.++||++.++++++++ ++++|+|+|+|+ .++.++++... .++.+.+..+.+++..+|+.||++
T Consensus 262 ~~~~i~~vGrl~~~K~~~~li~a~~~~--~~~~l~ivG~G~--~~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~aDv~ 335 (465)
T PLN02871 262 EKPLIVYVGRLGAEKNLDFLKRVMERL--PGARLAFVGDGP--YREELEKMFAG--TPTVFTGMLQGDELSQAYASGDVF 335 (465)
T ss_pred CCeEEEEeCCCchhhhHHHHHHHHHhC--CCcEEEEEeCCh--HHHHHHHHhcc--CCeEEeccCCHHHHHHHHHHCCEE
Confidence 457999999999999999999999987 589999999987 56667777654 358888888888899999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcccccccccc---CcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---GFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~---g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+||.+|+||++++|||+||+|||+++.||+.|++.+ +.+|++ ++++|+++++++|.+
T Consensus 336 V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~l----------v~~~d~~~la~~i~~ 396 (465)
T PLN02871 336 VMPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFL----------YTPGDVDDCVEKLET 396 (465)
T ss_pred EECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999 789999999988754
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2.4e-33 Score=297.45 Aligned_cols=326 Identities=16% Similarity=0.230 Sum_probs=236.8
Q ss_pred ceEEEEEeeccCc--cccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCe
Q 008488 85 LNILFVGTEVAPW--SKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (564)
Q Consensus 85 MkIl~vs~~~~P~--~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (564)
-||+|+.++-.|. ...||+++++.++++.|+. +|++++-..+.+++. +...+|+
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~---------------------~~~~~~~ 58 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY---------------------TKVNDNC 58 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCch---------------------hhccCCC
Confidence 3899998874443 4689999999999999953 999999876644441 0122456
Q ss_pred eEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchH
Q 008488 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (564)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~ 242 (564)
.+.++..+..+.+.. .+.+.. +...+.+..+..+..... .++| |||.|+... +.
T Consensus 59 ~~~~~~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~~---------~~~~-vi~v~~~~~-~~ 112 (380)
T PRK15484 59 DIHYIGFSRIYKRLF----QKWTRL-----------DPLPYSQRILNIAHKFTI---------TKDS-VIVIHNSMK-LY 112 (380)
T ss_pred ceEEEEeccccchhh----hhhhcc-----------CchhHHHHHHHHHHhcCC---------CCCc-EEEEeCcHH-hH
Confidence 666664332221100 011110 112234444444433321 1478 899997332 22
Q ss_pred HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 243 ~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
..++..+ +++|+++++|+... ...+..++.+++
T Consensus 113 -~~~~~~~------~~~~~v~~~h~~~~----------------------------------------~~~~~~~~~ii~ 145 (380)
T PRK15484 113 -RQIRERA------PQAKLVMHMHNAFE----------------------------------------PELLDKNAKIIV 145 (380)
T ss_pred -HHHHhhC------CCCCEEEEEecccC----------------------------------------hhHhccCCEEEE
Confidence 2223322 68899999994311 112346799999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|++.++.+.+. .+ ..++.+||||+|...|.+.. +..+++++|++.+ .
T Consensus 146 ~S~~~~~~~~~~----~~------~~~i~vIpngvd~~~~~~~~--------------------~~~~~~~~~~~~~--~ 193 (380)
T PRK15484 146 PSQFLKKFYEER----LP------NADISIVPNGFCLETYQSNP--------------------QPNLRQQLNISPD--E 193 (380)
T ss_pred cCHHHHHHHHhh----CC------CCCEEEecCCCCHHHcCCcc--------------------hHHHHHHhCCCCC--C
Confidence 999999988752 11 23789999999988776643 3456778888643 4
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCC-------hhhHHHHHHHHHhCCCceEEEeccChHHHHHH
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-------KPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~-------~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~i 473 (564)
++|+|+||+.+.||++.+++|++++.+ ++++|+|+|+|+ ..+.+.++++..+++.++.+.+..+.+++..+
T Consensus 194 ~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~ 273 (380)
T PRK15484 194 TVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNY 273 (380)
T ss_pred eEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Confidence 789999999999999999999999865 789999999875 23556777777777778888888888889999
Q ss_pred HHhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 474 IAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 474 l~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+.||++++||.+ |+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++.|+++++++|..
T Consensus 274 ~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l---------~~~~d~~~la~~I~~ 340 (380)
T PRK15484 274 YPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHL---------AEPMTSDSIISDINR 340 (380)
T ss_pred HHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEE---------eCCCCHHHHHHHHHH
Confidence 9999999999986 99999999999999999999999999999999999953 688999999998854
No 19
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.2e-33 Score=315.12 Aligned_cols=387 Identities=16% Similarity=0.151 Sum_probs=244.3
Q ss_pred ceEEEEEeecc--C-----ccccchHHHHhhhhH--------HHHHhCCCeEE----EEeeCCCccccccCcceEEEEEe
Q 008488 85 LNILFVGTEVA--P-----WSKTGGLGDVLGGLP--------PALAANGHRVM----TIAPRYDQYKDAWDTDVVIELKV 145 (564)
Q Consensus 85 MkIl~vs~~~~--P-----~~~~GG~~~~~~~La--------~aLa~~Gh~V~----vitp~~~~~~~~~~~~~~~~~~~ 145 (564)
|||++||...+ | ...+||...++.+++ ++|+++||+|. |+|...+.... -+..+..+.-
T Consensus 280 ~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~-~~~~~~~e~v- 357 (815)
T PLN00142 280 FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKG-TTCNQRLEKV- 357 (815)
T ss_pred HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccC-CcccCcceec-
Confidence 79999997643 1 135899999997655 67788999874 88876432211 0001000000
Q ss_pred CCeeeeEEEEEeeecCeeEEEEeCC-------cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhh-hhhccC
Q 008488 146 GDKIEKVRFFHCHKRGVDRVFVDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAP-RILNLN 217 (564)
Q Consensus 146 ~~~~~~~~~~~~~~~gv~~~~v~~~-------~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~-~~l~~~ 217 (564)
. -.+++.+++++.. .|.+| ..++ --+..|...+.+.+ +....
T Consensus 358 -~----------~~~~~~I~rvP~g~~~~~l~~~i~k------e~l~------------p~L~~f~~~~~~~~~~~~~~- 407 (815)
T PLN00142 358 -S----------GTEHSHILRVPFRTEKGILRKWISR------FDVW------------PYLETFAEDAASEILAELQG- 407 (815)
T ss_pred -c----------CCCceEEEecCCCCCccccccccCH------HHHH------------HHHHHHHHHHHHHHHHhcCC-
Confidence 0 0124445544311 12222 1111 12234555555443 22322
Q ss_pred CCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccC
Q 008488 218 SNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDG 297 (564)
Q Consensus 218 ~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 297 (564)
+|| |||+|.|.+++++..++... ++|.++|.|...-.... .++..+-.....+.-
T Consensus 408 ---------~PD-lIHaHYwdsg~vA~~La~~l-------gVP~v~T~HsL~k~K~~-~~~~~~~~~e~~y~~------- 462 (815)
T PLN00142 408 ---------KPD-LIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALEKTKYP-DSDIYWKKFDDKYHF------- 462 (815)
T ss_pred ---------CCC-EEEECCccHHHHHHHHHHHh-------CCCEEEEcccchhhhcc-ccCCcccccchhhhh-------
Confidence 499 99999999999999999875 99999999976532211 011000000111000
Q ss_pred CCCCccCchhHHHHHHHHhcceeccCCHHHHHHH-------HcCccCCCc-chhhh-----hccceEEecCCcccCCCCC
Q 008488 298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQEL-------VSGEDKGVE-LDNII-----RKTGIKGIVNGMDVQEWNP 364 (564)
Q Consensus 298 ~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l-------~~~~~~g~~-~~~~~-----~~~~i~~I~NGid~~~~~p 364 (564)
...+.-...++..||.||+.|......+ .+...++.+ +-.++ ...++.+|++|+|...|.|
T Consensus 463 ------~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P 536 (815)
T PLN00142 463 ------SCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 536 (815)
T ss_pred ------hhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCC
Confidence 0112235567889999999998776422 221111111 00000 0237899999999999987
Q ss_pred CCccc--cccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCC
Q 008488 365 LTDKY--IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTG 440 (564)
Q Consensus 365 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g 440 (564)
..... +..-++. .+....+..+.++++|+..+++.++|+++||+.++||++.|++|+.++.+ ++++|+|+|++
T Consensus 537 ~~~~~~rl~~l~n~---I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg 613 (815)
T PLN00142 537 YTEKQKRLTSLHPS---IEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGF 613 (815)
T ss_pred CChHHhhHHhhccc---chhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 54210 0000000 01122233445667887666677899999999999999999999998754 57999999987
Q ss_pred C-h------hh---HHHHHHHHHhCC--CceEEEecc----ChHHHHHHHH-hcCEEEEcCCCCCCcHHHHHHHHcCCcE
Q 008488 441 K-K------PM---EKQLEQLEILYP--EKARGVAKF----NIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVP 503 (564)
Q Consensus 441 ~-~------~~---~~~l~~L~~~~~--~~v~~~~~~----~~~~~~~il~-~ADv~v~PS~~E~~gl~~lEAma~G~Pv 503 (564)
. + +. .+.+.++..+++ +++.+.+.. ..+++..+++ .+|+||+||++|+||++++|||+||+||
T Consensus 614 ~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPV 693 (815)
T PLN00142 614 IDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPT 693 (815)
T ss_pred ccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCE
Confidence 2 1 11 134566666665 577776643 2244545555 5799999999999999999999999999
Q ss_pred EEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 504 IVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 504 I~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
|+|+.||+.|+|.+|.||++ ++|.|++++|++|.
T Consensus 694 VATdvGG~~EIV~dG~tG~L----------V~P~D~eaLA~aI~ 727 (815)
T PLN00142 694 FATCQGGPAEIIVDGVSGFH----------IDPYHGDEAANKIA 727 (815)
T ss_pred EEcCCCCHHHHhcCCCcEEE----------eCCCCHHHHHHHHH
Confidence 99999999999999999999 79999999999875
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.2e-33 Score=291.89 Aligned_cols=329 Identities=23% Similarity=0.215 Sum_probs=229.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++++ +|. .||.+.++.+|+++|+++||+|++++...+..... ...++.+
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~-----------------------~~~~~~~ 52 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE-----------------------YSPNIFF 52 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh-----------------------hccCeEE
Confidence 8999998 343 69999999999999999999999998753211110 0112222
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.++.+.+... . .... .......+.+.+++ ++|| |||+|.+.....+.
T Consensus 53 ~~~~~~~~~~~----------~------~~~~---~~~~~~~l~~~i~~------------~~~d-ivh~~~~~~~~~~~ 100 (371)
T cd04962 53 HEVEVPQYPLF----------Q------YPPY---DLALASKIAEVAKR------------YKLD-LLHVHYAVPHAVAA 100 (371)
T ss_pred EEecccccchh----------h------cchh---HHHHHHHHHHHHhc------------CCcc-EEeecccCCccHHH
Confidence 22211111000 0 0000 01122333333333 3699 89999876554444
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
++....... .++|+++++|+..... .... .....+.+..++.+|.++++|
T Consensus 101 ~~~~~~~~~---~~~~~i~~~h~~~~~~---------~~~~------------------~~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 101 YLAREILGK---KDLPVVTTLHGTDITL---------VGQD------------------PSFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHHhcCc---CCCcEEEEEcCCcccc---------cccc------------------ccchHHHHHHHhhCCEEEEcC
Confidence 444322110 2789999999543210 0000 011235667788999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+..++.+.+. ++ ...++.+|+||+|...+.+.. +...+.+++++. +.++
T Consensus 151 ~~~~~~~~~~--~~-------~~~~i~vi~n~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~ 199 (371)
T cd04962 151 ESLRQETYEL--FD-------ITKEIEVIPNFVDEDRFRPKP--------------------DEALKRRLGAPE--GEKV 199 (371)
T ss_pred HHHHHHHHHh--cC-------CcCCEEEecCCcCHhhcCCCc--------------------hHHHHHhcCCCC--CCeE
Confidence 9999988762 21 123799999999987766543 234566777764 4478
Q ss_pred EEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEEE
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
++++||+.+.||++.+++|++++.+ .+++++|+|.|+. .+.++++..+.+ +++.+.+.. +++..+|+.||+++
T Consensus 200 il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v 275 (371)
T cd04962 200 LIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPE--RSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFL 275 (371)
T ss_pred EEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcC--HHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEE
Confidence 9999999999999999999999866 5799999999873 345555555543 467777743 35678999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+||.+|++|++++|||+||+|||+|+.||..|++.++.+|++ ++++|+++++++|.+
T Consensus 276 ~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~----------~~~~~~~~l~~~i~~ 332 (371)
T cd04962 276 LPSEKESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFL----------VDVGDVEAMAEYALS 332 (371)
T ss_pred eCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEE----------cCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 788899999887753
No 21
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.5e-32 Score=292.67 Aligned_cols=346 Identities=18% Similarity=0.198 Sum_probs=228.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
|||||+..|++. ...|+++|+++||+|+++++....... .|++++
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 699999885432 456999999999999999987432111 046666
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+..+..-. . ...+|...........+++.+.+..+..+ .++|| |||+|.... ...+
T Consensus 46 ~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~pd-vi~~h~~~~--~~~~ 102 (396)
T cd03818 46 RYRPPRGPT-------S------GTHPYLREFEEAVLRGQAVARALLALRAK-------GFRPD-VIVAHPGWG--ETLF 102 (396)
T ss_pred EecCCCCCC-------C------CCCccchhHHHHHHHHHHHHHHHHHHHhc-------CCCCC-EEEECCccc--hhhh
Confidence 554221100 0 11124444444444444444444443211 35799 899996322 2234
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCc-CccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAY-QGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
++... +++|+|.+.|-... .+ ...+.......... ..........+....+..+|.++++|
T Consensus 103 l~~~~------~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ad~vi~~s 164 (396)
T cd03818 103 LKDVW------PDAPLIGYFEFYYRAEG-------ADVGFDPEFPPSLD-----DALRLRNRNALILLALAQADAGVSPT 164 (396)
T ss_pred HHHhC------CCCCEEEEEeeeecCCC-------CCCCCCCCCCCchh-----HHHHHHHhhhHhHHHHHhCCEEECCC
Confidence 44443 57888877762110 00 00000000000000 00000001112345688999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
++.++.+.+. + ..++.+|+||+|.+.|.|.... ....+...+++ .+.++
T Consensus 165 ~~~~~~~~~~--~---------~~ki~vI~ngvd~~~f~~~~~~------------------~~~~~~~~~~~--~~~~~ 213 (396)
T cd03818 165 RWQRSTFPAE--L---------RSRISVIHDGIDTDRLRPDPQA------------------RLRLPNGRVLT--PGDEV 213 (396)
T ss_pred HHHHhhCcHh--h---------ccceEEeCCCccccccCCCchh------------------hhcccccccCC--CCCeE
Confidence 9999887641 1 1389999999999998875421 11112222232 24578
Q ss_pred EEEEec-cccccCHHHHHHHHHhccc--CCeEEEEEeCCCh-----------hhHHHHHHHHHhC-CCceEEEeccChHH
Q 008488 405 IGFIGR-LEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-----------PMEKQLEQLEILY-PEKARGVAKFNIPL 469 (564)
Q Consensus 405 i~~iGr-l~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~-----------~~~~~l~~L~~~~-~~~v~~~~~~~~~~ 469 (564)
|+|+|| ++++||++.+++|++++.+ ++++++|+|++.+ ..++.++++..+. .+++.+.+..+.++
T Consensus 214 i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~ 293 (396)
T cd03818 214 ITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQ 293 (396)
T ss_pred EEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHH
Confidence 999998 9999999999999999865 7999999997421 1234455555422 25788888888889
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+..+|+.||++++||..|++|++++|||+||+|||+|+.||+.|++.++.+|++ +++.|+++++++|.+
T Consensus 294 ~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~l----------v~~~d~~~la~~i~~ 362 (396)
T cd03818 294 YLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLL----------VDFFDPDALAAAVIE 362 (396)
T ss_pred HHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEE----------cCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 799999999998754
No 22
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.1e-32 Score=308.29 Aligned_cols=435 Identities=19% Similarity=0.246 Sum_probs=321.8
Q ss_pred ceEEEEEeecc-----CccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc--cc-------------cccCc-------
Q 008488 85 LNILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ--YK-------------DAWDT------- 137 (564)
Q Consensus 85 MkIl~vs~~~~-----P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~--~~-------------~~~~~------- 137 (564)
--++++|.||. | ...||+|...+...++++..|..+.-+.-.|.+ +. +.|+.
T Consensus 86 ~~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~ 164 (778)
T cd04299 86 LVAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEP 164 (778)
T ss_pred CeeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEE
Confidence 34559998865 5 478999999999999999999999988876532 11 11211
Q ss_pred -------ceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccccccCCCC-CcccCCCCCCCCcchhHH---HHHHHHH
Q 008488 138 -------DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQ-SKIYGPRTGEDYQDNQLR---FSLLCQA 206 (564)
Q Consensus 138 -------~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~-~~iy~~~~~~~~~~~~~r---~~~~~~~ 206 (564)
...+.+.+......++.......++++++++++.+-...|.+.. ..+|+ .|+..| +.+|+.+
T Consensus 165 ~~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg-------~D~~~Rl~Qe~~Lg~a 237 (778)
T cd04299 165 VRDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYG-------GDQETRIQQEILLGIG 237 (778)
T ss_pred EecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCC-------CcHHHHHHHHHHHHHH
Confidence 23456667666677888888888999999998764222222221 24776 346677 5999999
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH-----HHHhh-ccCCC--CCCCCeEEEEEccCCcCc--cccc
Q 008488 207 ALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-----YLKTM-YKPKG--MYKSAKVVFCIHNIAYQG--RFAF 276 (564)
Q Consensus 207 ~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~-----~l~~~-~~~~~--~~~~~kvv~tiH~~~~~~--~~~~ 276 (564)
.+++++.+++ .|| |||+||||+++++. +++.. +.... .....+++||+|+..+|| .|+.
T Consensus 238 gl~~Lr~lg~----------~pd-ViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~ 306 (778)
T cd04299 238 GVRALRALGI----------KPT-VYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPP 306 (778)
T ss_pred HHHHHHHhCC----------CCe-EEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCH
Confidence 9999998865 499 99999999999998 44321 10000 012578999999999999 9987
Q ss_pred cccc--------cCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHH---HHHHHcCccCCCcchhhh
Q 008488 277 EDFG--------LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY---AQELVSGEDKGVELDNII 345 (564)
Q Consensus 277 ~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~---~~~l~~~~~~g~~~~~~~ 345 (564)
..+. .++++......+......+ .....++++.++..|+.+.+||+-. .+++......|.+++
T Consensus 307 ~l~~~~~~~~~~~lgl~~~~~~~lg~e~~~~---~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~--- 380 (778)
T cd04299 307 DLVERYFGPYARELGLSRDRFLALGRENPGD---DPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVE--- 380 (778)
T ss_pred HHHHHHhhHHHHHcCCCHHHHhhhccccccC---ccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcc---
Confidence 7663 2555544333222211100 0124699999999999999999977 555544333455432
Q ss_pred hccceEEecCCcccCCCC-CCCccccccccC---------------------cchhhhccHHHHHHHHHHh---------
Q 008488 346 RKTGIKGIVNGMDVQEWN-PLTDKYIGVKYD---------------------ASTVMDAKPLLKEALQAEV--------- 394 (564)
Q Consensus 346 ~~~~i~~I~NGid~~~~~-p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~--------- 394 (564)
..++..|.||||...|. |..++.+ .+|. ...+.+.|..+|+.|.+.+
T Consensus 381 -~~~i~~ITNGVh~~~W~~P~~~~l~-~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~ 458 (778)
T cd04299 381 -EVPIGHVTNGVHVPTWVAPEMRELY-DRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWL 458 (778)
T ss_pred -cCceeceeCCcchhhhcCHHHHHHH-HHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34799999999999998 7766655 3331 1224568888888887664
Q ss_pred ------------CCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCC------hhhHHHHHH
Q 008488 395 ------------GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK------KPMEKQLEQ 450 (564)
Q Consensus 395 ------------gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~------~~~~~~l~~ 450 (564)
+.+.+++.++|+|+.|+..+||.+++++.++.+.+ .++|||++|.++ +++.+.+.+
T Consensus 459 ~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~ 538 (778)
T cd04299 459 RRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVE 538 (778)
T ss_pred hcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHH
Confidence 55567788899999999999999999999887744 479999999987 567778888
Q ss_pred HHH--hCCCceEEEeccChHHHHHHHHhcCEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeec
Q 008488 451 LEI--LYPEKARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 526 (564)
Q Consensus 451 L~~--~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~ 526 (564)
++. .+++++.++..|+..+++.++++||++++||+ +|+||++.+-||..|.+-+++-.|.+.|-. ++.|||.||+
T Consensus 539 ~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~ 617 (778)
T cd04299 539 FSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGD 617 (778)
T ss_pred HHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCC
Confidence 888 66789999999999999999999999999999 899999999999999999999999999998 7899999987
Q ss_pred cccc--cccCCCCCHHHHHhhcc
Q 008488 527 FSVD--VIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 527 ~~~~--~~~v~~~d~~aLa~aI~ 547 (564)
.... .+.-+..|.++|.+.|+
T Consensus 618 ~~~~~~~~~~d~~da~~Ly~~Le 640 (778)
T cd04299 618 GDEYEDDEYQDAEEAEALYDLLE 640 (778)
T ss_pred CccccChhhcchhhHHHHHHHHH
Confidence 4432 11223345666666654
No 23
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.2e-32 Score=294.26 Aligned_cols=240 Identities=20% Similarity=0.238 Sum_probs=189.6
Q ss_pred CCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 226 ~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
.++| +||+|.+..+.+...++.... ...++++|.|+...... . ....
T Consensus 117 ~~~d-iihaH~~~~~~~~~~~~~~~~-----~~~~~~~t~Hg~d~~~~---------~------------------~~~~ 163 (406)
T PRK15427 117 FVAD-VFIAHFGPAGVTAAKLRELGV-----LRGKIATIFHGIDISSR---------E------------------VLNH 163 (406)
T ss_pred CCCC-EEEEcCChHHHHHHHHHHhCC-----CCCCeEEEEcccccccc---------h------------------hhhh
Confidence 3699 999998877766666654210 24467889995432100 0 0000
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
...+++..++.+|.++++|+..++.+.+ +|++.+ ++.+|+||+|.+.|.+....
T Consensus 164 ~~~~~~~~~~~ad~vv~~S~~~~~~l~~---~g~~~~------ki~vi~nGvd~~~f~~~~~~----------------- 217 (406)
T PRK15427 164 YTPEYQQLFRRGDLMLPISDLWAGRLQK---MGCPPE------KIAVSRMGVDMTRFSPRPVK----------------- 217 (406)
T ss_pred hhHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCHH------HEEEcCCCCCHHHcCCCccc-----------------
Confidence 1124566788999999999999999886 566544 89999999999888654311
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEE
Q 008488 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 461 (564)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~ 461 (564)
...+...|+|+||+.++||++.+++|++.+.+ ++++++|+|+|+ .++.++++..+++ +++.+
T Consensus 218 ------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~V~~ 283 (406)
T PRK15427 218 ------------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDVVEM 283 (406)
T ss_pred ------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCeEEE
Confidence 01234679999999999999999999999975 689999999997 4566777766654 57888
Q ss_pred EeccChHHHHHHHHhcCEEEEcCCC------CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCC
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSS 535 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~ 535 (564)
.+..+.+++..+|+.||++|+||.. |++|++++|||+||+|||+|+.||++|++.++.+|++ ++
T Consensus 284 ~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~l----------v~ 353 (406)
T PRK15427 284 PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWL----------VP 353 (406)
T ss_pred eCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEE----------eC
Confidence 8888888889999999999999984 9999999999999999999999999999999999998 79
Q ss_pred CCCHHHHHhhccc
Q 008488 536 PSYNSRVIPRIPL 548 (564)
Q Consensus 536 ~~d~~aLa~aI~~ 548 (564)
++|+++++++|.+
T Consensus 354 ~~d~~~la~ai~~ 366 (406)
T PRK15427 354 ENDAQALAQRLAA 366 (406)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
No 24
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=5.7e-32 Score=279.48 Aligned_cols=300 Identities=18% Similarity=0.207 Sum_probs=213.3
Q ss_pred ceEEEEEeeccC--ccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCe
Q 008488 85 LNILFVGTEVAP--WSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (564)
Q Consensus 85 MkIl~vs~~~~P--~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (564)
|||++|++.+.| ....||.++++..|+.+|.++||+|.++++..+..... ..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-------------------~~------- 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP-------------------LV------- 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc-------------------ee-------
Confidence 999999998754 34689999999999999999999999999864321110 00
Q ss_pred eEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchH
Q 008488 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (564)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~ 242 (564)
.. ........ +.............+.+.++. .+|| |||+|.+...+.
T Consensus 55 ~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~------------~~~D-ivh~~~~~~~~~ 101 (335)
T cd03802 55 PV--VPEPLRLD------------------APGRDRAEAEALALAERALAA------------GDFD-IVHNHSLHLPLP 101 (335)
T ss_pred ec--cCCCcccc------------------cchhhHhhHHHHHHHHHHHhc------------CCCC-EEEecCcccchh
Confidence 00 00000000 000001111122222233222 3599 999998877665
Q ss_pred HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 243 ~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
+... .+.|+++++|+..... ...........+.+++
T Consensus 102 ---~~~~-------~~~~~v~~~h~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 137 (335)
T cd03802 102 ---FARP-------LPVPVVTTLHGPPDPE----------------------------------LLKLYYAARPDVPFVS 137 (335)
T ss_pred ---hhcc-------cCCCEEEEecCCCCcc----------------------------------cchHHHhhCcCCeEEE
Confidence 2222 4789999999544310 0012334567889999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|+..++.+.. . .++.+||||+|++.|.+.. .+.
T Consensus 138 ~s~~~~~~~~~---~----------~~~~vi~ngvd~~~~~~~~---------------------------------~~~ 171 (335)
T cd03802 138 ISDAQRRPWPP---L----------PWVATVHNGIDLDDYPFRG---------------------------------PKG 171 (335)
T ss_pred ecHHHHhhccc---c----------cccEEecCCcChhhCCCCC---------------------------------CCC
Confidence 99999887654 1 2789999999998887532 134
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCCh--hhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~--~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
..++|+||+.+.||++.+++++++. +++|+|+|.|+. ......++... ..+++.+.+..+.+++..+++.+|++
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~---~~~l~i~G~~~~~~~~~~~~~~~~~-~~~~v~~~G~~~~~~~~~~~~~~d~~ 247 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRA---GIPLKLAGPVSDPDYFYREIAPELL-DGPDIEYLGEVGGAEKAELLGNARAL 247 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhc---CCeEEEEeCCCCHHHHHHHHHHhcc-cCCcEEEeCCCCHHHHHHHHHhCcEE
Confidence 6899999999999999999998765 899999999863 12222222211 24679999988888888899999999
Q ss_pred EEcCCC-CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 481 LIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 481 v~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
++||.+ |+||++++|||+||+|||+++.||..|++.++.+|++ +++ +++++++|..-
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l----------~~~--~~~l~~~l~~l 305 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFL----------VDS--VEELAAAVARA 305 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEE----------eCC--HHHHHHHHHHH
Confidence 999985 9999999999999999999999999999999999998 444 78888877643
No 25
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.7e-32 Score=292.69 Aligned_cols=346 Identities=14% Similarity=0.073 Sum_probs=211.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCC-CeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G-h~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (564)
++|||++|+..|.|| ++|+...+..++..|+++| |+|++++|.++...+.. ....++......+...+.. .-.+
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~--~~~~~~~f~~~~~~e~~~~-~~~~ 77 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKL--VYPNKITFSSPSEQEAYVR-QWLE 77 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccc--cccccccccCchhhhhhhh-hhcc
Confidence 579999999999999 9999999999999999999 89999999875221100 0000111111100000000 0001
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcchh---HHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCC-
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQ---LRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW- 237 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~---~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~- 237 (564)
-.++++....+ ..| .+.+ .++......+.+.++.. +|| |||.|+.
T Consensus 78 ~~v~r~~s~~~----------p~y--------p~r~~~~~r~~~~~~~i~~~l~~~------------~pD-VIHv~tP~ 126 (462)
T PLN02846 78 ERISFLPKFSI----------KFY--------PGKFSTDKRSILPVGDISETIPDE------------EAD-IAVLEEPE 126 (462)
T ss_pred CeEEEeccccc----------ccC--------cccccccccccCChHHHHHHHHhc------------CCC-EEEEcCch
Confidence 12223321111 001 1100 11111223344444433 599 8999973
Q ss_pred CcchH--HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHH-
Q 008488 238 HTSLI--PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI- 314 (564)
Q Consensus 238 ~~~~~--~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~- 314 (564)
+.++. +..+.+. .+. +|.+.|.... . | ....+ .+... ....+++...+
T Consensus 127 ~LG~~~~g~~~~~k-------~~~-vV~tyHT~y~-~-Y----~~~~~------------~g~~~---~~l~~~~~~~~~ 177 (462)
T PLN02846 127 HLTWYHHGKRWKTK-------FRL-VIGIVHTNYL-E-Y----VKREK------------NGRVK---AFLLKYINSWVV 177 (462)
T ss_pred hhhhHHHHHHHHhc-------CCc-EEEEECCChH-H-H----HHHhc------------cchHH---HHHHHHHHHHHH
Confidence 44443 2222221 134 8889995110 0 0 00000 00000 00111222222
Q ss_pred -HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 315 -LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 315 -~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
..+|.++++|....+ +.. .+...+||||.+.|.|... . +++.
T Consensus 178 r~~~d~vi~pS~~~~~-l~~---------------~~i~~v~GVd~~~f~~~~~--------------------~-~~~~ 220 (462)
T PLN02846 178 DIYCHKVIRLSAATQD-YPR---------------SIICNVHGVNPKFLEIGKL--------------------K-LEQQ 220 (462)
T ss_pred HHhcCEEEccCHHHHH-Hhh---------------CEEecCceechhhcCCCcc--------------------c-Hhhh
Confidence 248999999986655 443 3334568999998887542 1 1222
Q ss_pred hCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHH
Q 008488 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAH 471 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~ 471 (564)
.+ +.+.-.+.++|+|||.++||++.|++|++++.+ ++++|+|+|+|+ .++.++++..+++.++.++.++....
T Consensus 221 ~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp--~~~~L~~~a~~l~l~~~vf~G~~~~~-- 295 (462)
T PLN02846 221 KN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGE--DSDEVKAAAEKLELDVRVYPGRDHAD-- 295 (462)
T ss_pred cC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCc--cHHHHHHHHHhcCCcEEEECCCCCHH--
Confidence 22 222123579999999999999999999998865 689999999998 46677777776653344455554333
Q ss_pred HHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 472 ~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
.+++.+|+||+||.+|++|++++||||||+|||+++.++ .|++.++.+|+++ .|.++++++|.+
T Consensus 296 ~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~------------~~~~~~a~ai~~ 359 (462)
T PLN02846 296 PLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTY------------DDGKGFVRATLK 359 (462)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEec------------CCHHHHHHHHHH
Confidence 589999999999999999999999999999999999998 5999999999973 466777776544
No 26
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.6e-31 Score=282.83 Aligned_cols=337 Identities=23% Similarity=0.265 Sum_probs=235.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccccccCC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGK 179 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~ 179 (564)
.||++.++.+|+.+|+++||+|.|+++..+..... .....+++.++.+.......
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~----- 74 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPP--------------------IVELAPGVRVVRVPAGPAEY----- 74 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCC--------------------ccccccceEEEecccccccC-----
Confidence 78999999999999999999999999764321110 01123456666554321100
Q ss_pred CCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCC
Q 008488 180 TQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSA 259 (564)
Q Consensus 180 ~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~ 259 (564)
.. .......+..+...+...++... .+|| |||+|.+..++++..+++. .++
T Consensus 75 ----~~-------~~~~~~~~~~~~~~~~~~~~~~~----------~~~D-iv~~~~~~~~~~~~~~~~~-------~~~ 125 (398)
T cd03800 75 ----LP-------KEELWPYLDEFADDLLRFLRREG----------GRPD-LIHAHYWDSGLVALLLARR-------LGI 125 (398)
T ss_pred ----CC-------hhhcchhHHHHHHHHHHHHHhcC----------CCcc-EEEEecCccchHHHHHHhh-------cCC
Confidence 00 00000111223444444444321 1599 8999998888777776655 388
Q ss_pred eEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCC
Q 008488 260 KVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGV 339 (564)
Q Consensus 260 kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~ 339 (564)
|+|++.|+........ ...... .........++..++.+|.++++|+..++.+.+. ++.
T Consensus 126 ~~i~~~h~~~~~~~~~------~~~~~~-------------~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~--~~~ 184 (398)
T cd03800 126 PLVHTFHSLGAVKRRH------LGAADT-------------YEPARRIEAEERLLRAADRVIASTPQEAEELYSL--YGA 184 (398)
T ss_pred ceEEEeecccccCCcc------cccccc-------------cchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHH--ccc
Confidence 9999999643211000 000000 0001123445677889999999999998888762 222
Q ss_pred cchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHH
Q 008488 340 ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDI 419 (564)
Q Consensus 340 ~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ 419 (564)
+ ..++.+|+||+|...|.+... ....+.+.+.+. +.++|+|+||+.+.||++.
T Consensus 185 ~------~~~~~vi~ng~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~i~~~gr~~~~k~~~~ 237 (398)
T cd03800 185 Y------PRRIRVVPPGVDLERFTPYGR-------------------AEARRARLLRDP--DKPRILAVGRLDPRKGIDT 237 (398)
T ss_pred c------ccccEEECCCCCccceecccc-------------------hhhHHHhhccCC--CCcEEEEEcccccccCHHH
Confidence 2 226899999999988876542 111144455543 4589999999999999999
Q ss_pred HHHHHHhccc--CCeEEEEEeCCChh----hHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcH
Q 008488 420 LAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 491 (564)
Q Consensus 420 ll~A~~~l~~--~~v~lvIvG~g~~~----~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl 491 (564)
+++|+..+.+ ++++++|+|++... ....++.+...++ +++.+.+..+.+++..+++.||++++||..|++|+
T Consensus 238 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~ 317 (398)
T cd03800 238 LIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGL 317 (398)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCc
Confidence 9999999975 68999999987632 2334555555543 57888888888899999999999999999999999
Q ss_pred HHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 492 IQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 492 ~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++|||+||+|||+++.+|..|++.++.+|++ +++.|+++++++|.+
T Consensus 318 ~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~----------~~~~~~~~l~~~i~~ 364 (398)
T cd03800 318 TALEAMACGLPVVATAVGGPRDIVVDGVTGLL----------VDPRDPEALAAALRR 364 (398)
T ss_pred HHHHHHhcCCCEEECCCCCHHHHccCCCCeEE----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998 688899999888754
No 27
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.6e-32 Score=287.47 Aligned_cols=342 Identities=17% Similarity=0.178 Sum_probs=223.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeec-Cee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKR-GVD 163 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~ 163 (564)
|||+|+.+. ...||.+.++.+|+++|+++||+|+++|+..+.... .....+ ++.
T Consensus 1 mkIl~~~~~----~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------------------~~~~~~~~~~ 55 (392)
T cd03805 1 LRVAFIHPD----LGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC---------------------FEETKDGTLP 55 (392)
T ss_pred CeEEEECCC----CCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc---------------------chhccCCeeE
Confidence 899999865 346999999999999999999999999975321100 000111 133
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhh--hhccCCCCCCCCCCCCCEEEEEcCCCcch
Q 008488 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR--ILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (564)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~--~l~~~~~~~~~~~~~pDvIih~h~~~~~~ 241 (564)
+...... ..+ .++ .....+..+.+....... ... ..++| |||+|.+..+.
T Consensus 56 i~~~~~~--~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~D-vi~~~~~~~~~ 107 (392)
T cd03805 56 VRVRGDW--LPR-------SIF---------GRFHILCAYLRMLYLALYLLLLP---------DEKYD-VFIVDQVSACV 107 (392)
T ss_pred EEEEeEE--Ecc-------hhh---------HhHHHHHHHHHHHHHHHHHHhcc---------cCCCC-EEEEcCcchHH
Confidence 3332210 110 000 000011111111111110 111 12699 88988755432
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccC-chhHHHHHHHHhccee
Q 008488 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG-RKINWMKAGILESDMV 320 (564)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~ad~v 320 (564)
+ .++.. .+.|+++++|..... + .. ...+.. .+.. ....+.+..++.+|.|
T Consensus 108 -~-~~~~~-------~~~~~i~~~h~~~~~--~-----~~---~~~~~~----------~~~~~~~~~~e~~~~~~ad~i 158 (392)
T cd03805 108 -P-LLKLF-------SPSKILFYCHFPDQL--L-----AQ---RGSLLK----------RLYRKPFDWLEEFTTGMADKI 158 (392)
T ss_pred -H-HHHHh-------cCCcEEEEEecChHH--h-----cC---CCcHHH----------HHHHHHHHHHHHHHhhCceEE
Confidence 2 22222 237899999932210 0 00 000000 0000 1123455667899999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (564)
+++|+..++.+.+. ++.. ....+.+|+||+|.+.+.|.... ..+.....+ .
T Consensus 159 i~~s~~~~~~~~~~--~~~~-----~~~~~~vi~n~vd~~~~~~~~~~--------------------~~~~~~~~~--~ 209 (392)
T cd03805 159 VVNSNFTASVFKKT--FPSL-----AKNPREVVYPCVDTDSFESTSED--------------------PDPGLLIPK--S 209 (392)
T ss_pred EEcChhHHHHHHHH--hccc-----ccCCcceeCCCcCHHHcCccccc--------------------ccccccccC--C
Confidence 99999999988752 2211 11244699999999888764321 011122222 2
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhccc-----CCeEEEEEeCCCh------hhHHHHHHHHHh-C--CCceEEEeccC
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-----ENVQIIVLGTGKK------PMEKQLEQLEIL-Y--PEKARGVAKFN 466 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~-----~~v~lvIvG~g~~------~~~~~l~~L~~~-~--~~~v~~~~~~~ 466 (564)
+.++|+++||+.+.||++.+++|++++.+ ++++|+++|+|+. ++.+.++++..+ + .+++.+.+..+
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 45899999999999999999999999864 4899999998863 234666666665 3 36799999999
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
.+++..+|+.||++++||..|+||++++|||+||+|||+++.||..|++.++.+|++ +++ |+++++++|
T Consensus 290 ~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~----------~~~-~~~~~a~~i 358 (392)
T cd03805 290 DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFL----------CEP-TPEEFAEAM 358 (392)
T ss_pred hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEE----------eCC-CHHHHHHHH
Confidence 998889999999999999999999999999999999999999999999999999998 555 788888877
Q ss_pred cc
Q 008488 547 PL 548 (564)
Q Consensus 547 ~~ 548 (564)
..
T Consensus 359 ~~ 360 (392)
T cd03805 359 LK 360 (392)
T ss_pred HH
Confidence 53
No 28
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8.8e-32 Score=287.15 Aligned_cols=343 Identities=15% Similarity=0.145 Sum_probs=213.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++|... ...||+|.++.+|++.|.++||+|.++..+.+...... ...++..
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~----------------------~~~~~~~ 54 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV----------------------SHQNYPQ 54 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc----------------------ccCCcce
Confidence 999999976 45799999999999999999999999988743211100 0001111
Q ss_pred EEEeCCc-------ccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCC
Q 008488 165 VFVDHPW-------FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW 237 (564)
Q Consensus 165 ~~v~~~~-------~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~ 237 (564)
.....+. .+.|.++. ..++ -..+..+.+.+ .++|| |||.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~i~~-----------~~~pD-viHlH~~ 103 (405)
T PRK10125 55 VIKHTPRMTAMANIALFRLFNR---DLFG----------------NFNELYRTITR-----------TPGPV-VLHFHVL 103 (405)
T ss_pred EEEecccHHHHHHHHHHHhcch---hhcc----------------hHHHHHHHHhh-----------ccCCC-EEEEecc
Confidence 1111111 11110000 0000 01112222211 24699 9999988
Q ss_pred CcchHHHH-HHhhcc-CCCCCCCCeEEEEEccCCc-CccccccccccCCCCcccccc---cccccCCCCC-------ccC
Q 008488 238 HTSLIPCY-LKTMYK-PKGMYKSAKVVFCIHNIAY-QGRFAFEDFGLLNLPAQFKSS---FDFIDGYNKP-------VRG 304 (564)
Q Consensus 238 ~~~~~~~~-l~~~~~-~~~~~~~~kvv~tiH~~~~-~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~-------~~~ 304 (564)
+..++... +....+ -+-..+++|+|+|+|+.+. .|.+...+ ....|... +.....+... .+.
T Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~-----~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~ 178 (405)
T PRK10125 104 HSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTD-----GCEGWKTGCQKCPTLNNYPPVKVDRAHQLVA 178 (405)
T ss_pred cCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCc-----ccccccccCCCCCCccCCCCCccchHHHHHH
Confidence 87544332 111000 0000157899999998653 33333211 11112111 1111112110 011
Q ss_pred chhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccH
Q 008488 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (564)
Q Consensus 305 ~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (564)
.+..+.+.....++.++++|+++++.+.+ .++ ..++.+|+||+|++.+.+....
T Consensus 179 ~k~~~~~~~~~~~~~iV~~S~~l~~~~~~--~~~--------~~~i~vI~NGid~~~~~~~~~~---------------- 232 (405)
T PRK10125 179 GKRQLFREMLALGCQFISPSQHVADAFNS--LYG--------PGRCRIINNGIDMATEAILAEL---------------- 232 (405)
T ss_pred HHHHHHHHHhhcCcEEEEcCHHHHHHHHH--HcC--------CCCEEEeCCCcCcccccccccc----------------
Confidence 22233334445578999999999998875 233 2389999999997543322110
Q ss_pred HHHHHHHHHhCCCCCCCccEEEEEecc--ccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEE
Q 008488 385 LLKEALQAEVGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV 462 (564)
Q Consensus 385 ~~~~~l~~~~gl~~~~~~~~i~~iGrl--~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~ 462 (564)
...+ . ..+.++|+++|+. .+.||++.+++|+..+. ++++|+|+|.|++.. ..++...
T Consensus 233 ---~~~~----~--~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~-----------~~~v~~~ 291 (405)
T PRK10125 233 ---PPVR----E--TQGKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFT-----------AGNVVNH 291 (405)
T ss_pred ---cccc----c--CCCCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCccc-----------ccceEEe
Confidence 0000 0 1245789999994 47899999999999874 579999999886311 1235555
Q ss_pred ecc-ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHH
Q 008488 463 AKF-NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSR 541 (564)
Q Consensus 463 ~~~-~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~a 541 (564)
+.. +..++..+|++||++|+||++|+||++++||||||+|||+|++||++|++.++ +|++ ++|+|+++
T Consensus 292 g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~l----------v~~~d~~~ 360 (405)
T PRK10125 292 GFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKT----------VSEEEVLQ 360 (405)
T ss_pred cCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEE----------ECCCCHHH
Confidence 544 55677789999999999999999999999999999999999999999999875 9999 79999999
Q ss_pred HHhhcc
Q 008488 542 VIPRIP 547 (564)
Q Consensus 542 La~aI~ 547 (564)
||+.+.
T Consensus 361 La~~~~ 366 (405)
T PRK10125 361 LAQLSK 366 (405)
T ss_pred HHhccC
Confidence 998654
No 29
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=7.1e-32 Score=283.89 Aligned_cols=182 Identities=19% Similarity=0.280 Sum_probs=150.9
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCC-CCCccccccccCcchhhhccHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN-PLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
+..+|.++++|+..++.+.. +|++.+ ++.+|+||+|.+.+. +...
T Consensus 131 ~~~~d~~i~~S~~~~~~~~~---~~~~~~------ki~vi~N~id~~~~~~~~~~------------------------- 176 (359)
T PRK09922 131 ITCADYHLAISSGIKEQMMA---RGISAQ------RISVIYNPVEIKTIIIPPPE------------------------- 176 (359)
T ss_pred hhcCCEEEEcCHHHHHHHHH---cCCCHH------HEEEEcCCCCHHHccCCCcc-------------------------
Confidence 36899999999999999886 566544 899999999965543 2211
Q ss_pred HhCCCCCCCccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccC--
Q 008488 393 EVGLPVDRNIPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFN-- 466 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~-- 466 (564)
..+.++++++||+. ++||++.+++|+.++. ++++|+|+|+|+ .++.++++..+++ +++.+.+..+
T Consensus 177 ------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~-~~~~l~ivG~g~--~~~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 177 ------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT-GEWQLHIIGDGS--DFEKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred ------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC-CCeEEEEEeCCc--cHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 12347899999996 5699999999999884 479999999997 3556666666543 5788887663
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCcceeEeeccccccccCCCCCHHHHHhh
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPR 545 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~a 545 (564)
.+.+..+|+.+|++++||.+|+||++++|||+||+|||+++ .||..|+|.++.+|++ ++++|+++++++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~l----------v~~~d~~~la~~ 317 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGEL----------YTPGNIDEFVGK 317 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEE----------ECCCCHHHHHHH
Confidence 36777899999999999999999999999999999999999 8999999999999998 799999999998
Q ss_pred ccc
Q 008488 546 IPL 548 (564)
Q Consensus 546 I~~ 548 (564)
|.+
T Consensus 318 i~~ 320 (359)
T PRK09922 318 LNK 320 (359)
T ss_pred HHH
Confidence 864
No 30
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.2e-31 Score=276.09 Aligned_cols=311 Identities=23% Similarity=0.251 Sum_probs=224.9
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccccccC
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWG 178 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~ 178 (564)
..||.+.++.+|+++|+++||+|.++++....... ....|++++.+... .
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-----------------------~~~~~~~~~~~~~~---~---- 57 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAE-----------------------LEAEGSRHIKLPFI---S---- 57 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHH-----------------------HHhcCCeEEEcccc---c----
Confidence 45999999999999999999999999875321110 01124443332110 0
Q ss_pred CCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCC
Q 008488 179 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKS 258 (564)
Q Consensus 179 ~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~ 258 (564)
. +..........+...+++ .+|| +||+|.....+...++... .+
T Consensus 58 ---~-------------~~~~~~~~~~~l~~~~~~------------~~~d-ii~~~~~~~~~~~~~~~~~-------~~ 101 (355)
T cd03819 58 ---K-------------NPLRILLNVARLRRLIRE------------EKVD-IVHARSRAPAWSAYLAARR-------TR 101 (355)
T ss_pred ---c-------------chhhhHHHHHHHHHHHHH------------cCCC-EEEECCCchhHHHHHHHHh-------cC
Confidence 0 000111112222333332 3699 8999987766655554443 37
Q ss_pred CeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCC
Q 008488 259 AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG 338 (564)
Q Consensus 259 ~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g 338 (564)
+|+++++|+.... ..+.+..+..+|.++++|+..++.+.. .++
T Consensus 102 ~~~i~~~h~~~~~-----------------------------------~~~~~~~~~~~~~vi~~s~~~~~~~~~--~~~ 144 (355)
T cd03819 102 PPFVTTVHGFYSV-----------------------------------NFRYNAIMARGDRVIAVSNFIADHIRE--NYG 144 (355)
T ss_pred CCEEEEeCCchhh-----------------------------------HHHHHHHHHhcCEEEEeCHHHHHHHHH--hcC
Confidence 8999999943220 013455677899999999999999885 356
Q ss_pred CcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHH
Q 008488 339 VELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD 418 (564)
Q Consensus 339 ~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d 418 (564)
++.+ ++.+|+||+|...+.+.... ......++++++++. +.++++|+||+.+.||++
T Consensus 145 ~~~~------k~~~i~ngi~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 145 VDPD------RIRVIPRGVDLDRFDPGAVP---------------PERILALAREWPLPK--GKPVILLPGRLTRWKGQE 201 (355)
T ss_pred CChh------hEEEecCCccccccCccccc---------------hHHHHHHHHHcCCCC--CceEEEEeeccccccCHH
Confidence 5543 89999999999888654321 111233677777754 448999999999999999
Q ss_pred HHHHHHHhccc--CCeEEEEEeCCCh--hhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEEEEcC-CCCCCcH
Q 008488 419 ILAAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPS-RFEPCGL 491 (564)
Q Consensus 419 ~ll~A~~~l~~--~~v~lvIvG~g~~--~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~v~PS-~~E~~gl 491 (564)
.+++++..+.+ ++++++|+|.++. .+.+.+.++..+++ +++.+.+. .+++..+|+.||++++|| .+|++|+
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~ 279 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGR 279 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCch
Confidence 99999999977 6899999998863 34455555555443 46776666 455678999999999999 7899999
Q ss_pred HHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 492 IQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 492 ~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+++|||+||+|||+++.||..|++.++.+|++ ++++|+++++++|.
T Consensus 280 ~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~----------~~~~~~~~l~~~i~ 325 (355)
T cd03819 280 TAVEAQAMGRPVIASDHGGARETVRPGETGLL----------VPPGDAEALAQALD 325 (355)
T ss_pred HHHHHHhcCCCEEEcCCCCcHHHHhCCCceEE----------eCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998 78899999999884
No 31
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-33 Score=274.67 Aligned_cols=309 Identities=21% Similarity=0.296 Sum_probs=228.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
++|++|+..++|. .||++..++.|++.|-+.||.|.+++..|++... +|+. .+|+++
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~g------------------iryl---t~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRVG------------------IRYL---TNGLKV 57 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCccc------------------eeee---cCCceE
Confidence 5899999999997 9999999999999999999999999999875433 2322 367899
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
|+++....+.. -|=..+|+. +.++ +.. .+++ +.. |||.|...+.+.--
T Consensus 58 yylp~~v~~n~---tT~ptv~~~------------~Pll-r~i--~lrE-------------~I~-ivhghs~fS~lahe 105 (426)
T KOG1111|consen 58 YYLPAVVGYNQ---TTFPTVFSD------------FPLL-RPI--LLRE-------------RIE-IVHGHSPFSYLAHE 105 (426)
T ss_pred EEEeeeeeecc---cchhhhhcc------------Cccc-chh--hhhh-------------ceE-EEecCChHHHHHHH
Confidence 99876544432 111122221 1111 110 1111 356 99999877666543
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
.+.... ..+.++|||-|. .|.+.++..... .+++...+.+.|++||||
T Consensus 106 ~l~har-----tMGlktVfTdHS-----lfGfad~~si~~----------------------n~ll~~sL~~id~~IcVs 153 (426)
T KOG1111|consen 106 ALMHAR-----TMGLKTVFTDHS-----LFGFADIGSILT----------------------NKLLPLSLANIDRIICVS 153 (426)
T ss_pred HHHHHH-----hcCceEEEeccc-----cccccchhhhhh----------------------cceeeeeecCCCcEEEEe
Confidence 333221 258999999994 333333322211 123344577899999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
...++...-+ -.+ .+.++.+|||.++...|.|.... - .+.+...
T Consensus 154 htskentvlr--~~L------~p~kvsvIPnAv~~~~f~P~~~~---------------------------~-~S~~i~~ 197 (426)
T KOG1111|consen 154 HTSKENTVLR--GAL------APAKVSVIPNAVVTHTFTPDAAD---------------------------K-PSADIIT 197 (426)
T ss_pred ecCCCceEEE--ecc------CHhHeeeccceeeccccccCccc---------------------------c-CCCCeeE
Confidence 9888765531 122 33499999999999999995421 0 1224468
Q ss_pred EEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCCh--hhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~--~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
|+.++||...||+|.++++++++.+ ++++|+|+|+||+ .+++.++++.-+ +.+.+.+..+.+++.+.|...|+|
T Consensus 198 ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~--~rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 198 IVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQ--DRVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred EEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhcc--CceEEecccchHHHHHHHhcCcEE
Confidence 9999999999999999999999987 8999999999994 456666655543 569999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG 518 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g 518 (564)
++||..|+||++++|||+||++||+|+.||++|++.++
T Consensus 276 lntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d 313 (426)
T KOG1111|consen 276 LNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED 313 (426)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc
Confidence 99999999999999999999999999999999999875
No 32
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=1.1e-32 Score=274.23 Aligned_cols=235 Identities=40% Similarity=0.684 Sum_probs=175.3
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccC-cceEEE--------EEeCCeeeeEEEEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD-TDVVIE--------LKVGDKIEKVRFFH 156 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~ 156 (564)
||+||++|+.|+.++||+++++.+|+++|+++||+|+|++|.|+....... .....+ +.+.. ...+++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 799999999999999999999999999999999999999999976666541 111222 22222 15677888
Q ss_pred eeecCeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcC
Q 008488 157 CHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND 236 (564)
Q Consensus 157 ~~~~gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~ 236 (564)
...+|+++++++++.++.+ ..+|++. +.+|.|+..||.+|+++++++++.+++ +|| |||+||
T Consensus 80 ~~~~~v~v~~i~~~~~f~r------~~iY~~~-~~~~~d~~~rf~~fs~a~le~~~~l~~----------~pD-IIH~hD 141 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDR------PGIYGDN-GGDYPDNAERFAFFSRAALELLKKLGW----------KPD-IIHCHD 141 (245)
T ss_dssp EEETTEEEEEEESHHHHGS------SSSSBST-SSBHTTHHHHHHHHHHHHHHHHCTCT-----------S-S-EEEEEC
T ss_pred EEcCCccEEEecChhhccc------cceeccC-CCcchhHHHHHHHHHHHHHHHHHhhCC----------CCC-EEEecC
Confidence 8889999999999998876 5699877 788999999999999999999999865 599 899999
Q ss_pred CCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHh
Q 008488 237 WHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILE 316 (564)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 316 (564)
|+++++|.+++..++..+.+.++|+++||||..|||.++...+..+++++.....++.. .....+++++.++..
T Consensus 142 W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~------~~~~~in~lk~gi~~ 215 (245)
T PF08323_consen 142 WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEY------EFYGQINFLKAGIVY 215 (245)
T ss_dssp GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTT------EETTEEEHHHHHHHH
T ss_pred chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccc------ccccccCHHHHHHHh
Confidence 99999999999998877778899999999999999999988888888886443222111 123468999999999
Q ss_pred cceeccCCHHHHHHHHcCccCCCcchhhhh
Q 008488 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIR 346 (564)
Q Consensus 317 ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~ 346 (564)
||.|+|||+.+++++.. ..+|..++.+++
T Consensus 216 AD~v~TVS~~Ya~Ei~~-~~~g~GL~~~l~ 244 (245)
T PF08323_consen 216 ADKVTTVSPTYAREIQT-PEFGEGLEGLLR 244 (245)
T ss_dssp SSEEEESSHHHHHHTTS-HHHHTT-HHHHH
T ss_pred cCEeeeCCHHHHHHHhC-cccCCChHHHhc
Confidence 99999999999999987 334555554443
No 33
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=4.2e-31 Score=275.58 Aligned_cols=323 Identities=17% Similarity=0.153 Sum_probs=221.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||+++++.+ + .||.+.++.+++++|++.||+|+++++..... . +. ......|+.++
T Consensus 1 kIl~~~~~~-~---~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~-~~------------------~~~~~~~~~~~ 56 (358)
T cd03812 1 KILHIVGTM-N---RGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-D-YD------------------DEIEKLGGKIY 56 (358)
T ss_pred CEEEEeCCC-C---CccHHHHHHHHHHhcCccceEEEEEEeCCCCc-c-hH------------------HHHHHcCCeEE
Confidence 799999874 3 69999999999999999999999999874321 0 00 00011244444
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+.... . +.. .+.....+.+++ ++|| |||+|......++..
T Consensus 57 ~~~~~~--~---------------------~~~---~~~~~~~~~~~~------------~~~D-vv~~~~~~~~~~~~~ 97 (358)
T cd03812 57 YIPARK--K---------------------NPL---KYFKKLYKLIKK------------NKYD-IVHVHGSSASGFILL 97 (358)
T ss_pred EecCCC--c---------------------cHH---HHHHHHHHHHhc------------CCCC-EEEEeCcchhHHHHH
Confidence 332110 0 011 111222222222 3699 899998776555555
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
+.... ....++++.|+..+..... .. ......+.+.....+|.++++|+
T Consensus 98 ~~~~~------~~~~~v~~~~~~~~~~~~~-------------~~------------~~~~~~~~~~~~~~~~~~i~~s~ 146 (358)
T cd03812 98 AAKKA------GVKVRIAHSHNTSDSHDKK-------------KK------------ILKYKVLRKLINRLATDYLACSE 146 (358)
T ss_pred HHhhC------CCCeEEEEecccccccccc-------------ch------------hhHHHHHHHHHHhcCCEEEEcCH
Confidence 55442 2334567788544311100 00 00001234456778999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+. ++ +.++.+||||+|.+.+.+.... ++. +.+.+.. .+.++|
T Consensus 147 ~~~~~~~~~----~~------~~~~~vi~ngvd~~~~~~~~~~------------------~~~-~~~~~~~--~~~~~i 195 (358)
T cd03812 147 EAGKWLFGK----VK------NKKFKVIPNGIDLEKFIFNEEI------------------RKK-RRELGIL--EDKFVI 195 (358)
T ss_pred HHHHHHHhC----CC------cccEEEEeccCcHHHcCCCchh------------------hhH-HHHcCCC--CCCEEE
Confidence 999988752 22 3389999999999887654320 111 4455554 355899
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+|+||+.++||++.+++|+..+.+ ++++++|+|+|+ ..+.++++..+++ +++.+.+. .+++..+++.||++|
T Consensus 196 ~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v 271 (358)
T cd03812 196 GHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--LEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFL 271 (358)
T ss_pred EEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEE
Confidence 999999999999999999999976 699999999988 3445555554443 56777766 445667999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+||++|++|++++|||++|+|||+|+.||..|++.+ ..|++ ..++++++++++|.+
T Consensus 272 ~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~~~~----------~~~~~~~~~a~~i~~ 327 (358)
T cd03812 272 FPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTD-LVKFL----------SLDESPEIWAEEILK 327 (358)
T ss_pred ecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-CccEE----------eCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998 45555 466678999888744
No 34
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=8.8e-31 Score=276.38 Aligned_cols=322 Identities=18% Similarity=0.184 Sum_probs=217.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC-ccccccCcceEEEEEeCCeeeeEEEEEeeecCee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (564)
-||++|.... ..||.+.++.+|+.+|.+.||++.+++.... .+.. .....|+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~i~ 55 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRK----------------------RIQRPDVA 55 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHH----------------------HHHhcCce
Confidence 5899999863 3699999999999999999999988874321 1111 01123555
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHH
Q 008488 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (564)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~ 243 (564)
++.+..+.. . . ..+...+.+++++. +|| |||+|...+.. .
T Consensus 56 ~~~~~~~~~-~---------------------~----~~~~~~l~~~l~~~------------~~D-ivh~~~~~~~~-~ 95 (374)
T TIGR03088 56 FYALHKQPG-K---------------------D----VAVYPQLYRLLRQL------------RPD-IVHTRNLAALE-A 95 (374)
T ss_pred EEEeCCCCC-C---------------------C----hHHHHHHHHHHHHh------------CCC-EEEEcchhHHH-H
Confidence 555432100 0 0 01222333444433 599 89999754322 2
Q ss_pred HHHHhhccCCCCCCCCe-EEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHH-HHHhcceec
Q 008488 244 CYLKTMYKPKGMYKSAK-VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA-GILESDMVL 321 (564)
Q Consensus 244 ~~l~~~~~~~~~~~~~k-vv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~ad~vi 321 (564)
.+.... .+.| ++++.|....... . + ......+++. ....+|.++
T Consensus 96 ~~~~~~-------~~~~~~i~~~h~~~~~~~-----------~-----------~-----~~~~~~~~~~~~~~~~~~~i 141 (374)
T TIGR03088 96 QLPAAL-------AGVPARIHGEHGRDVFDL-----------D-----------G-----SNWKYRWLRRLYRPLIHHYV 141 (374)
T ss_pred HHHHHh-------cCCCeEEEeecCcccccc-----------h-----------h-----hHHHHHHHHHHHHhcCCeEE
Confidence 222222 1334 3445553211000 0 0 0011234433 345789999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (564)
++|+..++.+.+ .++++.+ ++.+|+||+|.+.|.|.... +...+.+...+ .+
T Consensus 142 ~vs~~~~~~~~~--~~~~~~~------~~~vi~ngvd~~~~~~~~~~------------------~~~~~~~~~~~--~~ 193 (374)
T TIGR03088 142 AVSRDLEDWLRG--PVKVPPA------KIHQIYNGVDTERFHPSRGD------------------RSPILPPDFFA--DE 193 (374)
T ss_pred EeCHHHHHHHHH--hcCCChh------hEEEeccCccccccCCCccc------------------hhhhhHhhcCC--CC
Confidence 999999998876 3455433 88999999999888765321 11222222222 24
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHH
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMI 473 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~i 473 (564)
.++|+++||+.++||++.+++|++++.+ ++++|+++|+|+ .++.++++...++ +++.+.+ . .+++..+
T Consensus 194 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g-~-~~~~~~~ 269 (374)
T TIGR03088 194 SVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP--ARGACEQMVRAAGLAHLVWLPG-E-RDDVPAL 269 (374)
T ss_pred CeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc--hHHHHHHHHHHcCCcceEEEcC-C-cCCHHHH
Confidence 5799999999999999999999998854 279999999987 3455666655554 3344444 3 4456789
Q ss_pred HHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 474 l~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++.||++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++ ++++|+++++++|..
T Consensus 270 ~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~----------~~~~d~~~la~~i~~ 334 (374)
T TIGR03088 270 MQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGAL----------VPPGDAVALARALQP 334 (374)
T ss_pred HHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEE----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 688999999988854
No 35
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.2e-29 Score=264.71 Aligned_cols=311 Identities=17% Similarity=0.178 Sum_probs=207.4
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..++| ...||++.++.+|+++|.++||+|.|+++....... ....+|++++
T Consensus 1 ~i~~i~~~~~~-~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~----------------------~~~~~~i~~~ 57 (363)
T cd04955 1 KIAIIGTRGIP-AKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK----------------------ETEYNGVRLI 57 (363)
T ss_pred CeEEEecCcCC-cccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc----------------------ccccCCceEE
Confidence 79999887666 368999999999999999999999999976322110 1123567776
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.++.+.... . ..+...........+ . ++| ++|.|.+.....+..
T Consensus 58 ~~~~~~~~~------------------~----~~~~~~~~~~~~~~~--~-----------~~~-~~~i~~~~~~~~~~~ 101 (363)
T cd04955 58 HIPAPEIGG------------------L----GTIIYDILAILHALF--V-----------KRD-IDHVHALGPAIAPFL 101 (363)
T ss_pred EcCCCCccc------------------h----hhhHHHHHHHHHHHh--c-----------cCC-eEEEEecCccHHHHH
Confidence 654321000 0 000000111111111 1 234 344444333222222
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
..... .+.|+++++|+..+... .+ ..+.......+.+..++.+|.++++|+
T Consensus 102 ~~~~~------~~~~~v~~~h~~~~~~~-------------~~----------~~~~~~~~~~~~~~~~~~ad~ii~~s~ 152 (363)
T cd04955 102 PLLRL------KGKKVVVNMDGLEWKRA-------------KW----------GRPAKRYLKFGEKLAVKFADRLIADSP 152 (363)
T ss_pred HHHHh------cCCCEEEEccCcceeec-------------cc----------ccchhHHHHHHHHHHHhhccEEEeCCH
Confidence 11111 37899999996543110 00 000000112234556789999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.. .+|.+ . .+|+||+|...+.+ ..+.+.+.+++. .+.+
T Consensus 153 ~~~~~~~~--~~~~~--------~-~~i~ngv~~~~~~~----------------------~~~~~~~~~~~~---~~~i 196 (363)
T cd04955 153 GIKEYLKE--KYGRD--------S-TYIPYGADHVVSSE----------------------EDEILKKYGLEP---GRYY 196 (363)
T ss_pred HHHHHHHH--hcCCC--------C-eeeCCCcChhhcch----------------------hhhhHHhcCCCC---CcEE
Confidence 99999865 24432 3 89999999876543 122344556542 2478
Q ss_pred EEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC--hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~--~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
+|+||+.+.||++.+++|+.++.. +++|+|+|+|+ ..+.+.+++. ....+++++.+..+.+++..++..||++++|
T Consensus 197 ~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~-~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 197 LLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHNTPYGKLLKEK-AAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred EEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCcchHHHHHHHH-hCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 899999999999999999999854 89999999985 2344444431 2234679999888888888899999999999
Q ss_pred CCC-CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEe
Q 008488 484 SRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (564)
Q Consensus 484 S~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~ 524 (564)
|.. |+||++++|||+||+|||+|+.|+..|++.+ +|++|
T Consensus 275 s~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~ 314 (363)
T cd04955 275 GHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYF 314 (363)
T ss_pred CccCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEe
Confidence 999 9999999999999999999999999999986 78774
No 36
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=9.7e-30 Score=272.86 Aligned_cols=344 Identities=13% Similarity=0.027 Sum_probs=219.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCee
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (564)
..||++++.. .+|....+..++.+|+++||+|+++++..+...+. .....|+.
T Consensus 3 ~~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~---------------------~~~~~~v~ 55 (415)
T cd03816 3 RKRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE---------------------ILSNPNIT 55 (415)
T ss_pred ccEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH---------------------HhcCCCEE
Confidence 4577777753 35667778899999999999999999763211110 01124667
Q ss_pred EEEEeCCc-ccccccCCCCCcccCCCCCCCCcchhHHH-HHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCc--
Q 008488 164 RVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRF-SLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT-- 239 (564)
Q Consensus 164 ~~~v~~~~-~~~~~w~~~~~~iy~~~~~~~~~~~~~r~-~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~-- 239 (564)
++.+..+. ... ......++ ......+..+++.+.. ..+|| |||+|....
T Consensus 56 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~D-vi~~~~~~~~~ 108 (415)
T cd03816 56 IHPLPPPPQRLN------------------KLPFLLFAPLKVLWQFFSLLWLLYK--------LRPAD-YILIQNPPSIP 108 (415)
T ss_pred EEECCCCccccc------------------cchHHHHHHHHHHHHHHHHHHHHHh--------cCCCC-EEEEeCCCCch
Confidence 66664321 000 00111111 1111112222221111 12699 888886332
Q ss_pred -chHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcc
Q 008488 240 -SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (564)
Q Consensus 240 -~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad 318 (564)
+.++.+++.. .++|+|+++|+..+. .. ..+.. ...++......+++...+.+|
T Consensus 109 ~~~~a~~~~~~-------~~~~~V~~~h~~~~~------~~-~~~~~------------~~~~~~~~~~~~e~~~~~~ad 162 (415)
T cd03816 109 TLLIAWLYCLL-------RRTKLIIDWHNYGYT------IL-ALKLG------------ENHPLVRLAKWYEKLFGRLAD 162 (415)
T ss_pred HHHHHHHHHHH-------hCCeEEEEcCCchHH------HH-hcccC------------CCCHHHHHHHHHHHHHhhcCC
Confidence 2233344443 378999999964320 00 00000 000000112233455667899
Q ss_pred eeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH------
Q 008488 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA------ 392 (564)
Q Consensus 319 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 392 (564)
.|+++|+.+++.+.+ +|++.+ ++.+|+||. ...|.|.... .....+.+
T Consensus 163 ~ii~vS~~~~~~l~~---~~~~~~------ki~vI~Ng~-~~~f~p~~~~----------------~~~~~~~~~~~~~~ 216 (415)
T cd03816 163 YNLCVTKAMKEDLQQ---FNNWKI------RATVLYDRP-PEQFRPLPLE----------------EKHELFLKLAKTFL 216 (415)
T ss_pred EeeecCHHHHHHHHh---hhccCC------CeeecCCCC-HHHceeCcHH----------------HHHHHHHhcccccc
Confidence 999999999999875 455433 899999994 4556654310 01111111
Q ss_pred -------HhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--------CCeEEEEEeCCChhhHHHHHHHHHhCC-
Q 008488 393 -------EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--------ENVQIIVLGTGKKPMEKQLEQLEILYP- 456 (564)
Q Consensus 393 -------~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--------~~v~lvIvG~g~~~~~~~l~~L~~~~~- 456 (564)
..++.. ++..+++++||+.++||++.+++|++.+.+ ++++|+|+|+|+ .++.++++..+++
T Consensus 217 ~~~~~~~~~~~~~-~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~--~~~~l~~~~~~~~l 293 (415)
T cd03816 217 TRELRIGAVQLSE-ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP--LKEKYLERIKELKL 293 (415)
T ss_pred ccccccccceecC-CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc--cHHHHHHHHHHcCC
Confidence 112222 234678889999999999999999999853 479999999998 4566666666655
Q ss_pred CceEEEec-cChHHHHHHHHhcCEEEEcCC---CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccc
Q 008488 457 EKARGVAK-FNIPLAHMIIAGADFILIPSR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVI 532 (564)
Q Consensus 457 ~~v~~~~~-~~~~~~~~il~~ADv~v~PS~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~ 532 (564)
.++.++.+ .+.+++..+|+.||+++.|+. .|++|++++|||+||+|||+++.||..|+++++.+|++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~l--------- 364 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLV--------- 364 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEE---------
Confidence 35776654 588889999999999997533 47899999999999999999999999999999999998
Q ss_pred cCCCCCHHHHHhhccc
Q 008488 533 YSSPSYNSRVIPRIPL 548 (564)
Q Consensus 533 ~v~~~d~~aLa~aI~~ 548 (564)
++ |+++||++|.+
T Consensus 365 -v~--d~~~la~~i~~ 377 (415)
T cd03816 365 -FG--DSEELAEQLID 377 (415)
T ss_pred -EC--CHHHHHHHHHH
Confidence 42 78888888753
No 37
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=8e-30 Score=264.49 Aligned_cols=320 Identities=22% Similarity=0.288 Sum_probs=220.5
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..++|. .||.+..+..++.+|+++||+|.++++........... .++...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 56 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV----------------------VVVRPF 56 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc----------------------cccccc
Confidence 799999988775 89999999999999999999999999875433221000 000110
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCC-cchHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~-~~~~~~ 244 (564)
..... +..+ .. .. ..+.....+.++. .+|| |||+|... .+....
T Consensus 57 ~~~~~-~~~~--------~~------------~~-~~~~~~~~~~~~~------------~~~D-iv~~~~~~~~~~~~~ 101 (374)
T cd03817 57 RVPTF-KYPD--------FR------------LP-LPIPRALIIILKE------------LGPD-IVHTHTPFSLGLLGL 101 (374)
T ss_pred ccccc-hhhh--------hh------------cc-ccHHHHHHHHHhh------------cCCC-EEEECCchhhhhHHH
Confidence 00000 0000 00 00 0011122222222 2599 88888643 233333
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchh-HHHHHHHHhcceeccC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI-NWMKAGILESDMVLTV 323 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~ad~vi~v 323 (564)
.+++. .++|+++++|.... .+ .......... ...... .+++..+..+|.++++
T Consensus 102 ~~~~~-------~~~~~i~~~~~~~~--~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~i~~~ 155 (374)
T cd03817 102 RVARK-------LGIPVVATYHTMYE--DY----THYVPLGRLL-------------ARAVVRRKLSRRFYNRCDAVIAP 155 (374)
T ss_pred HHHHH-------cCCCEEEEecCCHH--HH----HHHHhcccch-------------hHHHHHHHHHHHHhhhCCEEEec
Confidence 33333 38899999995432 00 0000000000 000112 4667788899999999
Q ss_pred CHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCcc
Q 008488 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (564)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (564)
|+..++.+.. ++.+ .++.+++||+|...+.+.. .+..+++++++. +.+
T Consensus 156 s~~~~~~~~~---~~~~-------~~~~vi~~~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~ 203 (374)
T cd03817 156 SEKIADLLRE---YGVK-------RPIEVIPTGIDLDRFEPVD--------------------GDDERRKLGIPE--DEP 203 (374)
T ss_pred cHHHHHHHHh---cCCC-------CceEEcCCccchhccCccc--------------------hhHHHHhcCCCC--CCe
Confidence 9999988876 3332 2689999999998876643 122255666643 457
Q ss_pred EEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv 479 (564)
+|+++|++.+.||++.++++++++.+ ++++++++|.++ ..+.++++..+++ .++.+.+..+.+++..+++.||+
T Consensus 204 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 281 (374)
T cd03817 204 VLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIFTGFVPREELPDYYKAADL 281 (374)
T ss_pred EEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE
Confidence 99999999999999999999999876 789999999987 3455555554433 57888888888899999999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEe
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~ 524 (564)
+++||..|++|++++|||+||+|||+++.|++.|++.++.+|+++
T Consensus 282 ~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~ 326 (374)
T cd03817 282 FVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLF 326 (374)
T ss_pred EEecccccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEe
Confidence 999999999999999999999999999999999999999999983
No 38
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.97 E-value=9.9e-30 Score=268.65 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=205.7
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..+ ..||++.++.+|+++|.+.||+|+++++.... +.+... + .. +....|...
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~--~~~~~~-----------~--~~-~~~~~g~~~- 59 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDP--EFFNVT-----------K--KF-HNALQGADI- 59 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCCh--hHHHHH-----------H--Hh-hHhhcCCCC-
Confidence 799999763 36999999999999999999999999885321 100000 0 00 000001111
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhh-hhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR-ILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~-~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+ .... .+ ..+......... .+. ..+|| |||+|++....++.
T Consensus 60 -------------------~-------~~~~-~~-~~~~~~~~~~~~~~~~---------~~~~D-vv~~h~~~~~~~~~ 101 (372)
T cd03792 60 -------------------E-------LSEE-EK-EIYLEWNEENAERPLL---------DLDAD-VVVIHDPQPLALPL 101 (372)
T ss_pred -------------------C-------CCHH-HH-HHHHHHHHHHhccccc---------cCCCC-EEEECCCCchhHHH
Confidence 0 0111 00 111111111111 111 23699 89999887544333
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
..+. .++|+|++.|+..... . .....+++..+..+|.+++.|
T Consensus 102 ~~~~--------~~~~~i~~~H~~~~~~---------------~---------------~~~~~~~~~~~~~~d~~i~~~ 143 (372)
T cd03792 102 FKKK--------RGRPWIWRCHIDLSSP---------------N---------------RRVWDFLQPYIEDYDAAVFHL 143 (372)
T ss_pred hhhc--------CCCeEEEEeeeecCCC---------------c---------------HHHHHHHHHHHHhCCEEeecH
Confidence 2221 3789999999532100 0 112345677788999999888
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+.+. . .+++ ..++ +||||+|........ ..+.....+++++|++. +.++
T Consensus 144 ~~~~----~---~~~~------~~~~-vipngvd~~~~~~~~---------------~~~~~~~~~~~~~~~~~--~~~~ 192 (372)
T cd03792 144 PEYV----P---PQVP------PRKV-IIPPSIDPLSGKNRE---------------LSPADIEYILEKYGIDP--ERPY 192 (372)
T ss_pred HHhc----C---CCCC------CceE-EeCCCCCCCccccCC---------------CCHHHHHHHHHHhCCCC--CCcE
Confidence 4332 1 2222 1244 999999965311100 11233556788899864 4489
Q ss_pred EEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCCh---hhHHHHHHHHHh--CCCceEEEecc--ChHHHHHHHH
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEIL--YPEKARGVAKF--NIPLAHMIIA 475 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~---~~~~~l~~L~~~--~~~~v~~~~~~--~~~~~~~il~ 475 (564)
|+++||+.++||++.+++|++.+.+ ++++|+|+|+|+. +.++.++++.+. ..+++.+.+.. +.+++..+|+
T Consensus 193 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 272 (372)
T cd03792 193 ITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQR 272 (372)
T ss_pred EEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHH
Confidence 9999999999999999999998865 6899999999862 233444554432 33467777765 7788888999
Q ss_pred hcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEe
Q 008488 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (564)
Q Consensus 476 ~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~ 524 (564)
.||++++||.+|+||++++|||+||+|||+|+.||+.|++.++.+|+++
T Consensus 273 ~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~ 321 (372)
T cd03792 273 ASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLV 321 (372)
T ss_pred hCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEe
Confidence 9999999999999999999999999999999999999999999999983
No 39
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=7.9e-30 Score=263.71 Aligned_cols=325 Identities=19% Similarity=0.212 Sum_probs=218.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||+++++.++| ...||.+.++.+|+++|+++||+|.++++........... .+....
T Consensus 1 kIl~i~~~~~~-~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 57 (359)
T cd03823 1 RILVVNHLYPP-RSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEV----------------------IGVVVY 57 (359)
T ss_pred CeeEEcccCCc-ccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccc----------------------ccceee
Confidence 79999998777 4679999999999999999999999999874332221000 000000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.......... ......+ .........+.....+.++. .+|| +||+|.+........
T Consensus 58 ~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------~~~d-ii~~~~~~~~~~~~~ 113 (359)
T cd03823 58 GRPIDEVLRS---ALPRDLF--------HLSDYDNPAVVAEFARLLED------------FRPD-VVHFHHLQGLGVSIL 113 (359)
T ss_pred ccccccccCC---Cchhhhh--------HHHhccCHHHHHHHHHHHHH------------cCCC-EEEECCccchHHHHH
Confidence 0000000000 0000000 00000001122233333333 2599 899987643322222
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
..... .++|+++++|+...... +........|.++++|+
T Consensus 114 ~~~~~------~~~~~i~~~hd~~~~~~-----------------------------------~~~~~~~~~d~ii~~s~ 152 (359)
T cd03823 114 RAARD------RGIPIVLTLHDYWLICP-----------------------------------RQGLFKKGGDAVIAPSR 152 (359)
T ss_pred HHHHh------cCCCEEEEEeeeeeecc-----------------------------------hhhhhccCCCEEEEeCH
Confidence 11111 37899999995332000 00000112399999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+ ++.. ..++.+|+||+|...+.+... +. ..+.+++
T Consensus 153 ~~~~~~~~---~~~~------~~~~~vi~n~~~~~~~~~~~~---------------------------~~--~~~~~~i 194 (359)
T cd03823 153 FLLDRYVA---NGLF------AEKISVIRNGIDLDRAKRPRR---------------------------AP--PGGRLRF 194 (359)
T ss_pred HHHHHHHH---cCCC------ccceEEecCCcChhhcccccc---------------------------CC--CCCceEE
Confidence 99999886 3332 238999999999987765421 11 2245789
Q ss_pred EEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCC
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~ 485 (564)
+|+|++.+.||++.++++++++.+++++|+++|.++......... ....++.+.+.++.+++..+++.||++++||.
T Consensus 195 ~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~ 271 (359)
T cd03823 195 GFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSI 271 (359)
T ss_pred EEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCc
Confidence 999999999999999999999876789999999987433222221 34457888888888999999999999999998
Q ss_pred -CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 486 -FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 486 -~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.|++|++++|||+||+|||+++.++..|++.++.+|++ ++++|+++++++|.+.
T Consensus 272 ~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~----------~~~~d~~~l~~~i~~l 326 (359)
T cd03823 272 WPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLL----------FPPGDAEDLAAALERL 326 (359)
T ss_pred ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEE----------ECCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998 6888899998887544
No 40
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=1.3e-29 Score=264.04 Aligned_cols=319 Identities=20% Similarity=0.245 Sum_probs=223.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||+++++.+ ..||.+.++.+|+++|.++||+|++++...+...... ..+....
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-----------------------~~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP-----------------------IDATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch-----------------------hhccceE
Confidence 588888652 4699999999999999999999999986532111100 0000001
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+... . ....+......+.++++. ++|| |||+|.+++.++..+
T Consensus 54 ~~~~~---~---------------------~~~~~~~~~~~~~~~~~~------------~~pd-iv~~~~~~~~~~~~l 96 (360)
T cd04951 54 NLNMS---K---------------------NPLSFLLALWKLRKILRQ------------FKPD-VVHAHMFHANIFARL 96 (360)
T ss_pred Eeccc---c---------------------cchhhHHHHHHHHHHHHh------------cCCC-EEEEcccchHHHHHH
Confidence 11100 0 000011111222333333 3599 999998887766666
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
++... ...+++++.|+...++. ....+.+.....++.++++|+
T Consensus 97 ~~~~~------~~~~~v~~~h~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~s~ 139 (360)
T cd04951 97 LRLFL------PSPPLICTAHSKNEGGR-------------------------------LRMLAYRLTDFLSDLTTNVSK 139 (360)
T ss_pred HHhhC------CCCcEEEEeeccCchhH-------------------------------HHHHHHHHHhhccCceEEEcH
Confidence 65543 47889999995432110 011222333446888889999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
...+.+... .+++ ..++.+||||+|...+.+... .+..++++++++. +.+++
T Consensus 140 ~~~~~~~~~--~~~~------~~~~~~i~ng~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~ 191 (360)
T cd04951 140 EALDYFIAS--KAFN------ANKSFVVYNGIDTDRFRKDPA------------------RRLKIRNALGVKN--DTFVI 191 (360)
T ss_pred HHHHHHHhc--cCCC------cccEEEEccccchhhcCcchH------------------HHHHHHHHcCcCC--CCEEE
Confidence 999988762 2233 238999999999887765431 2456778888864 44899
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+ .++.++++...++ +++.+.+.. +++..+|+.||+++
T Consensus 192 l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v 267 (360)
T cd04951 192 LAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--LRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFV 267 (360)
T ss_pred EEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--cHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEE
Confidence 999999999999999999999876 589999999987 3344555544443 467777643 45667999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+||.+|++|++++|||++|+|||+++.|++.|++.+ +|+. ++++|+++++++|.+.
T Consensus 268 ~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~----------~~~~~~~~~~~~i~~l 323 (360)
T cd04951 268 LSSAWEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLI----------VPISDPEALANKIDEI 323 (360)
T ss_pred ecccccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceE----------eCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 7887 6889999999887654
No 41
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=3.1e-29 Score=260.91 Aligned_cols=323 Identities=20% Similarity=0.243 Sum_probs=224.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..|+|. .||.+.++.+|+++|.++||+|++++......... ....+.++.
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----------------------~~~~~~~~~ 56 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD----------------------EERNGHRVI 56 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh----------------------hhccCceEE
Confidence 799999998885 89999999999999999999999999764321110 001222333
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+... .. +.. .. . ........+ +. .+++| |||+|..........
T Consensus 57 ~~~~~--~~---------~~~------~~-~-------~~~~~~~~~-~~---------~~~~D-ii~~~~~~~~~~~~~ 100 (357)
T cd03795 57 RAPSL--LN---------VAS------TP-F-------SPSFFKQLK-KL---------AKKAD-VIHLHFPNPLADLAL 100 (357)
T ss_pred Eeecc--cc---------ccc------cc-c-------cHHHHHHHH-hc---------CCCCC-EEEEecCcchHHHHH
Confidence 22211 00 000 00 0 000011111 11 23699 889886443222221
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
.... .+.|+++++|+...... ........+++..++.+|.++++|+
T Consensus 101 ~~~~-------~~~~~i~~~h~~~~~~~---------------------------~~~~~~~~~~~~~~~~~d~vi~~s~ 146 (357)
T cd03795 101 LLLP-------RKKPVVVHWHSDIVKQK---------------------------LLLKLYRPLQRRFLRRADAIVATSP 146 (357)
T ss_pred HHhc-------cCceEEEEEcChhhccc---------------------------hhhhhhhHHHHHHHHhcCEEEeCcH
Confidence 1111 37899999995322110 0001122455667899999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
.+.+.+... .+. +.++.+||||+|...+.+.... +. .+...+ .+.+++
T Consensus 147 ~~~~~~~~~--~~~-------~~~~~~i~~gi~~~~~~~~~~~------------------~~---~~~~~~--~~~~~i 194 (357)
T cd03795 147 NYAETSPVL--RRF-------RDKVRVIPLGLDPARYPRPDAL------------------EE---AIWRRA--AGRPFF 194 (357)
T ss_pred HHHHHHHHh--cCC-------ccceEEecCCCChhhcCCcchh------------------hh---HhhcCC--CCCcEE
Confidence 999877652 111 1278999999999887654310 00 122222 245799
Q ss_pred EEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~--~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
+|+||+.+.||++.+++|++++. +++++|+|.|+ ....++++.++. ..++.+.+..+.+++..+++.||++++|
T Consensus 195 ~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~--~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~p 270 (357)
T cd03795 195 LFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGP--LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFP 270 (357)
T ss_pred EEecccccccCHHHHHHHHHhcc--CcEEEEEeCCh--hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeC
Confidence 99999999999999999999995 89999999987 455566665443 3579999888988888999999999999
Q ss_pred CC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc-CcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 484 SR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 484 S~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~-g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|. .|++|++++|||+||+|||+++.|+..|.+.+ +.+|++ ++++|+++++++|..
T Consensus 271 s~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~----------~~~~d~~~~~~~i~~ 328 (357)
T cd03795 271 SVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLV----------VPPGDPAALAEAIRR 328 (357)
T ss_pred CcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEE----------eCCCCHHHHHHHHHH
Confidence 97 49999999999999999999999999999986 899998 688899999988754
No 42
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=1.5e-29 Score=265.24 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=187.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCch
Q 008488 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
+|| |||+|....++....+.+. .++|+++++|+....... .+... . . ....
T Consensus 82 ~~d-vvh~~~~~~~~~~~~~~~~-------~~~p~i~~~h~~~~~~~~------------~~~~~----~----~-~~~~ 132 (367)
T cd05844 82 RPD-LVHAHFGFDGVYALPLARR-------LGVPLVVTFHGFDATTSL------------ALLLR----S----R-WALY 132 (367)
T ss_pred CCC-EEEeccCchHHHHHHHHHH-------cCCCEEEEEeCccccccc------------hhhcc----c----c-hhHH
Confidence 599 8999976655555554443 389999999954321000 00000 0 0 0112
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+.+..++.+|.++++|+..++.+.+ +|++.+ ++.+++||+|.+.+.+...
T Consensus 133 ~~~~~~~~~~~d~ii~~s~~~~~~~~~---~~~~~~------~i~vi~~g~d~~~~~~~~~------------------- 184 (367)
T cd05844 133 ARRRRRLARRAALFIAVSQFIRDRLLA---LGFPPE------KVHVHPIGVDTAKFTPATP------------------- 184 (367)
T ss_pred HHHHHHHHHhcCEEEECCHHHHHHHHH---cCCCHH------HeEEecCCCCHHhcCCCCC-------------------
Confidence 334556778999999999999999986 465543 7999999999887765421
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHh--CCCceEEE
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEIL--YPEKARGV 462 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~--~~~~v~~~ 462 (564)
..+.++++|+|++.+.||++.+++|++++.+ ++++|+|+|.|+ .++.++++..+ ...++.+.
T Consensus 185 ------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~ 250 (367)
T cd05844 185 ------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGRVTFL 250 (367)
T ss_pred ------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCeEEEC
Confidence 1244789999999999999999999999865 689999999886 45566776666 34678888
Q ss_pred eccChHHHHHHHHhcCEEEEcCC------CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCC
Q 008488 463 AKFNIPLAHMIIAGADFILIPSR------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSP 536 (564)
Q Consensus 463 ~~~~~~~~~~il~~ADv~v~PS~------~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~ 536 (564)
+..+.+++..+|+.||++++||. .|+||++++|||+||+|||+++.+|..|++.++.+|++ +++
T Consensus 251 g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~----------~~~ 320 (367)
T cd05844 251 GAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLL----------VPE 320 (367)
T ss_pred CCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEE----------ECC
Confidence 88888889999999999999997 49999999999999999999999999999999999998 688
Q ss_pred CCHHHHHhhccc
Q 008488 537 SYNSRVIPRIPL 548 (564)
Q Consensus 537 ~d~~aLa~aI~~ 548 (564)
.|+++++++|.+
T Consensus 321 ~d~~~l~~~i~~ 332 (367)
T cd05844 321 GDVAALAAALGR 332 (367)
T ss_pred CCHHHHHHHHHH
Confidence 899999888754
No 43
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=2.7e-29 Score=269.66 Aligned_cols=190 Identities=19% Similarity=0.150 Sum_probs=154.0
Q ss_pred HHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHH
Q 008488 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (564)
Q Consensus 309 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
+++...+.+|.++++|+++++.+.+. ++. ..++.+|+||+|++.+.+...
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~~--~~~-------~~~~~vi~~gvd~~~~~~~~~--------------------- 231 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRSL--WKR-------NTKPSIVYPPCDVEELLKLPL--------------------- 231 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHHH--hCc-------CCCcEEEcCCCCHHHhccccc---------------------
Confidence 56667889999999999999998862 221 127899999999887754321
Q ss_pred HHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C-----CeEEEEEeCCCh----hhHHHHHHHHHhCC-
Q 008488 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-----NVQIIVLGTGKK----PMEKQLEQLEILYP- 456 (564)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~-----~v~lvIvG~g~~----~~~~~l~~L~~~~~- 456 (564)
. ...+.++|+|+||+++.||++.+++|++++.+ + +++++|+|++.. .+.+.++++..+++
T Consensus 232 ------~--~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l 303 (419)
T cd03806 232 ------D--EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL 303 (419)
T ss_pred ------c--cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Confidence 0 01244799999999999999999999999875 2 599999998742 35667777776653
Q ss_pred -CceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccc-ccccc---cCcceeEeecccccc
Q 008488 457 -EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL-VDTVE---EGFTGFQMGSFSVDV 531 (564)
Q Consensus 457 -~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~-~e~v~---~g~~G~l~~~~~~~~ 531 (564)
++|.+.+..+.+++..+|+.||++++||..|+||++++|||+||+|||++++||. .|++. ++.+|++
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l-------- 375 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFL-------- 375 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEE--------
Confidence 5799999889999999999999999999999999999999999999999999775 57887 8999998
Q ss_pred ccCCCCCHHHHHhhccc
Q 008488 532 IYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 532 ~~v~~~d~~aLa~aI~~ 548 (564)
+ .|++++|++|.+
T Consensus 376 --~--~d~~~la~ai~~ 388 (419)
T cd03806 376 --A--STAEEYAEAIEK 388 (419)
T ss_pred --e--CCHHHHHHHHHH
Confidence 3 277788777643
No 44
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=6.3e-29 Score=258.37 Aligned_cols=313 Identities=21% Similarity=0.204 Sum_probs=223.6
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||+|++..+ |. |.+.++.+++++|.++||+|.++++.........+ .
T Consensus 1 ki~~~~~~~-~~----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~----------------~------------ 47 (355)
T cd03799 1 KIAYLVKEF-PR----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHP----------------E------------ 47 (355)
T ss_pred CEEEECCCC-CC----cchHHHHHHHHHHHhCCCeEEEEEecCcccccccc----------------c------------
Confidence 799999885 42 36789999999999999999999987432211000 0
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
....+.... +. .+..........+.+.+. ..++| |||+|.+........
T Consensus 48 ~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~---------~~~~D-ii~~~~~~~~~~~~~ 96 (355)
T cd03799 48 DRAELARTR------------------YL---ARSLALLAQALVLARELR---------RLGID-HIHAHFGTTPATVAM 96 (355)
T ss_pred ccccccchH------------------HH---HHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCCchHHHHH
Confidence 000000000 00 111111122222222221 12599 999998755444444
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
+.... .+.|+++++|+...... ....+++..++.+|.++++|+
T Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~vi~~s~ 139 (355)
T cd03799 97 LASRL------GGIPYSFTAHGKDIFRS-------------------------------PDAIDLDEKLARADFVVAISE 139 (355)
T ss_pred HHHHh------cCCCEEEEEeccccccc-------------------------------CchHHHHHHHhhCCEEEECCH
Confidence 44332 36899999995332100 001356777889999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+. ++.+. .++.+++||+|...+.+.... ...+.+.|
T Consensus 140 ~~~~~l~~~--~~~~~------~~~~vi~~~~d~~~~~~~~~~-----------------------------~~~~~~~i 182 (355)
T cd03799 140 YNRQQLIRL--LGCDP------DKIHVVHCGVDLERFPPRPPP-----------------------------PPGEPLRI 182 (355)
T ss_pred HHHHHHHHh--cCCCc------ccEEEEeCCcCHHHcCCcccc-----------------------------ccCCCeEE
Confidence 999999872 24433 389999999998877654200 12245789
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeccChHHHHHHHHhcCEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~--~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+|+|++.+.||++.+++++.++.+ ++++++|+|.++ ..+.++++..++ +.++.+.+..+.+++..+++.||+++
T Consensus 183 ~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l 260 (355)
T cd03799 183 LSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP--LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFV 260 (355)
T ss_pred EEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc--cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEE
Confidence 999999999999999999999876 589999999987 234455554443 35788888888888999999999999
Q ss_pred EcCCC------CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 482 IPSRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 482 ~PS~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+||.+ |++|++++|||++|+|+|+++.|+..|+++++.+|++ +++.|+++++++|..
T Consensus 261 ~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~----------~~~~~~~~l~~~i~~ 323 (355)
T cd03799 261 LPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLL----------VPPGDPEALADAIER 323 (355)
T ss_pred ecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEE----------eCCCCHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999998 688899999888754
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=2.7e-29 Score=280.57 Aligned_cols=245 Identities=15% Similarity=0.147 Sum_probs=171.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEE-EEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF-CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~-tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
+|| |||+|.....++..+.... .++|+|+ +.|+... ... +..+ ..
T Consensus 400 kpD-IVH~h~~~a~~lg~lAa~~-------~gvPvIv~t~h~~~~-~~~----------~~~~---------------~~ 445 (694)
T PRK15179 400 VPS-VVHIWQDGSIFACALAALL-------AGVPRIVLSVRTMPP-VDR----------PDRY---------------RV 445 (694)
T ss_pred CCc-EEEEeCCcHHHHHHHHHHH-------cCCCEEEEEeCCCcc-ccc----------hhHH---------------HH
Confidence 599 9999988777666666554 3678776 5564321 000 0000 00
Q ss_pred hhHHHHHHHH--hcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhcc
Q 008488 306 KINWMKAGIL--ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383 (564)
Q Consensus 306 ~~~~~k~~~~--~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (564)
...+....+. ..+.++++|...++.+.. .+|++.+ ++.+||||+|...|.+...
T Consensus 446 ~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~--~~g~~~~------kI~VI~NGVd~~~f~~~~~---------------- 501 (694)
T PRK15179 446 EYDIIYSELLKMRGVALSSNSQFAAHRYAD--WLGVDER------RIPVVYNGLAPLKSVQDDA---------------- 501 (694)
T ss_pred HHHHHHHHHHhcCCeEEEeCcHHHHHHHHH--HcCCChh------HEEEECCCcCHHhcCCCch----------------
Confidence 0111111222 345677778888877765 3566544 8999999999887765321
Q ss_pred HHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--Cce
Q 008488 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKA 459 (564)
Q Consensus 384 ~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v 459 (564)
....+..+......+.++|+++||+.++||++.+++|+.++.+ ++++|+|+|+|+ .++.++++..+++ ++|
T Consensus 502 ---~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL~~~V 576 (694)
T PRK15179 502 ---CTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGMGERI 576 (694)
T ss_pred ---hhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCCCCcE
Confidence 0111112222112245799999999999999999999998865 789999999987 4566777766654 567
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCH
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYN 539 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~ 539 (564)
.+.+.. +++..+|+.+|++|+||.+|+||++++|||+||+|||+|+.||+.|+|.++.+|++ ++++|+
T Consensus 577 ~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlL----------v~~~d~ 644 (694)
T PRK15179 577 LFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLT----------LPADTV 644 (694)
T ss_pred EEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEE----------eCCCCC
Confidence 766643 34667999999999999999999999999999999999999999999999999999 677664
Q ss_pred --HHHHhhc
Q 008488 540 --SRVIPRI 546 (564)
Q Consensus 540 --~aLa~aI 546 (564)
++++++|
T Consensus 645 ~~~~La~aL 653 (694)
T PRK15179 645 TAPDVAEAL 653 (694)
T ss_pred ChHHHHHHH
Confidence 3454444
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=5.5e-29 Score=258.24 Aligned_cols=326 Identities=23% Similarity=0.270 Sum_probs=223.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..+.|. .||.+..+..|+++|+++||+|.++++.......... +.+.+.
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-----------------------RVVPVP 55 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-----------------------Cceeec
Confidence 799999998775 5999999999999999999999999987432111000 001111
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCc-chHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT-SLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~-~~~~~ 244 (564)
....+.+.. .++. .. ........++. ++|| +||+|.... ++...
T Consensus 56 ~~~~~~~~~-------~~~~-------~~--------~~~~~~~~~~~------------~~pd-ii~~~~~~~~~~~~~ 100 (364)
T cd03814 56 SVPLPGYPE-------IRLA-------LP--------PRRRVRRLLDA------------FAPD-VVHIATPGPLGLAAL 100 (364)
T ss_pred ccccCcccc-------eEec-------cc--------chhhHHHHHHh------------cCCC-EEEEeccchhhHHHH
Confidence 110000000 0000 00 00111112222 3599 788875433 22333
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
.+.+. .++|+++++|+...+- . .. . ...+.........+..+..+|.++++|
T Consensus 101 ~~~~~-------~~~~~i~~~~~~~~~~--~----~~------~---------~~~~~~~~~~~~~~~~~~~~d~i~~~s 152 (364)
T cd03814 101 RAARR-------LGIPVVTSYHTDFPEY--L----RY------Y---------GLGPLSWLAWAYLRWFHNRADRVLVPS 152 (364)
T ss_pred HHHHH-------cCCCEEEEEecChHHH--h----hh------c---------ccchHhHhhHHHHHHHHHhCCEEEeCC
Confidence 33332 4889999999533200 0 00 0 000000111345566788999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+...+.+.. .+. .++.+++||+|...+.|... +...+.+++ + .+.++
T Consensus 153 ~~~~~~~~~---~~~--------~~~~~~~~g~~~~~~~~~~~-------------------~~~~~~~~~-~--~~~~~ 199 (364)
T cd03814 153 PSLADELRA---RGF--------RRVRLWPRGVDTELFHPRRR-------------------DEALRARLG-P--PDRPV 199 (364)
T ss_pred HHHHHHHhc---cCC--------CceeecCCCccccccCcccc-------------------cHHHHHHhC-C--CCCeE
Confidence 999986664 222 27899999999988876542 122344444 2 24578
Q ss_pred EEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
++|+|++.+.||++.++++++++.+ ++++++|+|.++. +..++ ....++.+.+..+.+++..+++.||++++|
T Consensus 200 i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~ 273 (364)
T cd03814 200 LLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA--RARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFP 273 (364)
T ss_pred EEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch--HHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 9999999999999999999999976 5899999999873 23333 334578888888888899999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 484 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|..|++|++++|||+||+|||+++.++..|++.++.+|++ +++.|.++++++|.+
T Consensus 274 s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~----------~~~~~~~~l~~~i~~ 328 (364)
T cd03814 274 SRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLL----------VEPGDAEAFAAALAA 328 (364)
T ss_pred cccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEE----------cCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 688888888887754
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=4.8e-29 Score=260.26 Aligned_cols=315 Identities=19% Similarity=0.226 Sum_probs=218.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++++.. + ..||.+.++..++++|.++||+|.+++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 999999864 3 3699999999999999999999999987521
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
.+.. .++ ..+|| |||+|.+....+..
T Consensus 42 ------~~~~-----------------------------------~~~------------~~~~d-iih~~~~~~~~~~~ 67 (365)
T cd03825 42 ------ALIS-----------------------------------KIE------------IINAD-IVHLHWIHGGFLSI 67 (365)
T ss_pred ------hhhh-----------------------------------Chh------------cccCC-EEEEEccccCccCH
Confidence 0000 000 12599 89999866655443
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccc---cccccCCCC-CccCchhHHHHHHH-Hhcce
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSS---FDFIDGYNK-PVRGRKINWMKAGI-LESDM 319 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~k~~~-~~ad~ 319 (564)
.....+. .++|+|+++|+......-. . .......+... ..+...+.. .+......+.+..+ ..++.
T Consensus 68 ~~~~~~~-----~~~~~v~~~hd~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
T cd03825 68 EDLSKLL-----DRKPVVWTLHDMWPFTGGC--H--YPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLT 138 (365)
T ss_pred HHHHHHH-----cCCCEEEEcccCccccccc--C--CccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcE
Confidence 3332221 3789999999753211000 0 00000000000 000000000 00011112222222 45778
Q ss_pred eccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 008488 320 VLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (564)
Q Consensus 320 vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (564)
++++|++.++.+.+. +.++ ..++.+++||+|.+.+.|.. +...+..++++.+
T Consensus 139 ~v~~s~~~~~~~~~~--~~~~------~~~~~vi~ngi~~~~~~~~~--------------------~~~~~~~~~~~~~ 190 (365)
T cd03825 139 IVAPSRWLADCARSS--SLFK------GIPIEVIPNGIDTTIFRPRD--------------------KREARKRLGLPAD 190 (365)
T ss_pred EEehhHHHHHHHHhc--cccC------CCceEEeCCCCcccccCCCc--------------------HHHHHHHhCCCCC
Confidence 999999999888762 2222 33899999999998886643 4556777888644
Q ss_pred CCccEEEEEecccc--ccCHHHHHHHHHhccc---CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccC-hHHHHHH
Q 008488 400 RNIPVIGFIGRLEE--QKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN-IPLAHMI 473 (564)
Q Consensus 400 ~~~~~i~~iGrl~~--~KG~d~ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~-~~~~~~i 473 (564)
.+++++.|+... .||++.+++|++.+.+ ++++++++|.++...+. ....++.+.+..+ .+++..+
T Consensus 191 --~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 191 --KKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-------DLPFPVHYLGSLNDDESLALI 261 (365)
T ss_pred --CeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-------cCCCceEecCCcCCHHHHHHH
Confidence 357777777655 8999999999999875 78999999998742221 2335688888887 7788889
Q ss_pred HHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 474 l~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+.||++++||..|++|++++|||+||+|||+++.||+.|++.++.+|++ +++.|+++++++|.+
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~----------~~~~~~~~~~~~l~~ 326 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYL----------AKPGDPEDLAEGIEW 326 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEE----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 688888888887754
No 48
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.97 E-value=6.3e-29 Score=257.51 Aligned_cols=335 Identities=19% Similarity=0.198 Sum_probs=221.7
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..++|. .||.+.++.+|+++|+++||+|+++++........... ......
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 56 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVAL----------------------NGVPVK 56 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhc----------------------cCceee
Confidence 799999987654 89999999999999999999999999864322211000 000000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcC-CCcchH-H
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND-WHTSLI-P 243 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~-~~~~~~-~ 243 (564)
..... ... .. .... ..+........... ...+| |||+|+ |..... .
T Consensus 57 ~~~~~--~~~--------~~----------~~~~-~~~~~~~~~~~~~~----------~~~~d-ii~~~~~~~~~~~~~ 104 (375)
T cd03821 57 LFSIN--VAY--------GL----------NLAR-YLFPPSLLAWLRLN----------IREAD-IVHVHGLWSYPSLAA 104 (375)
T ss_pred ecccc--hhh--------hh----------hhhh-hccChhHHHHHHHh----------CCCCC-EEEEecccchHHHHH
Confidence 00000 000 00 0000 00000111111111 12599 889987 332222 2
Q ss_pred HHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccC
Q 008488 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (564)
Q Consensus 244 ~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 323 (564)
..+.+. .+.|++++.|+........ ...+. +. .......+..+..++.++++
T Consensus 105 ~~~~~~-------~~~~~i~~~~~~~~~~~~~---------~~~~~----------~~--~~~~~~~~~~~~~~~~i~~~ 156 (375)
T cd03821 105 ARAARK-------YGIPYVVSPHGMLDPWALP---------HKALK----------KR--LAWFLFERRLLQAAAAVHAT 156 (375)
T ss_pred HHHHHH-------hCCCEEEEccccccccccc---------cchhh----------hH--HHHHHHHHHHHhcCCEEEEC
Confidence 222222 3789999999543211000 00000 00 00112345567789999999
Q ss_pred CHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCcc
Q 008488 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (564)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (564)
|+......... . ...++.+||||+|...+.+... ...+...+.+ .+.+
T Consensus 157 s~~~~~~~~~~---~-------~~~~~~vi~~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~ 204 (375)
T cd03821 157 SEQEAAEIRRL---G-------LKAPIAVIPNGVDIPPFAALPS--------------------RGRRRKFPIL--PDKR 204 (375)
T ss_pred CHHHHHHHHhh---C-------CcccEEEcCCCcChhccCcchh--------------------hhhhhhccCC--CCCc
Confidence 98877766541 1 1237999999999988876431 1115555554 3458
Q ss_pred EEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv 479 (564)
+++|+||+.+.||++.+++|+.++.+ ++++++|+|.++......++.+..+++ .++.+.+..+.+++..+++.||+
T Consensus 205 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv 284 (375)
T cd03821 205 IILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADL 284 (375)
T ss_pred EEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCE
Confidence 99999999999999999999999977 699999999987656666666544433 57888888888888899999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++||.+|+||++++|||+||+|||+++.||+.|++.+ .+|++ .+.+.++++++|.+
T Consensus 285 ~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~i~~ 341 (375)
T cd03821 285 FVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWV-----------VDDDVDALAAALRR 341 (375)
T ss_pred EEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEE-----------eCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999998 78986 34455788777644
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=1.2e-28 Score=256.46 Aligned_cols=353 Identities=19% Similarity=0.195 Sum_probs=235.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+..++|. .||.+.++..++++|+++||+|.++++............ ......++++++
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG---------------YKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc---------------ceEEecCCeEEE
Confidence 799999987775 489999999999999999999999998643222110000 111223566666
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCC-cc-hHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TS-LIP 243 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~-~~-~~~ 243 (564)
.+........ . +.....+...+.......... . ..+|| +||+|.+. .. ...
T Consensus 64 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~-~---------~~~~D-~v~~~~~~~~~~~~~ 116 (394)
T cd03794 64 RVPLPPYKKN-------G---------LLKRLLNYLSFALSALLALLK-R---------RRRPD-VIIATSPPLLIALAA 116 (394)
T ss_pred EEecCCCCcc-------c---------hHHHHHhhhHHHHHHHHHHHh-c---------ccCCC-EEEEcCChHHHHHHH
Confidence 6543221110 0 101112222233333332221 1 12699 78888632 22 222
Q ss_pred HHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccC
Q 008488 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (564)
Q Consensus 244 ~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 323 (564)
..++.. .++|+++++|+....... ...... ...........+++..+..+|.++++
T Consensus 117 ~~~~~~-------~~~~~i~~~h~~~~~~~~-----~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~vi~~ 172 (394)
T cd03794 117 LLLARL-------KGAPFVLEVRDLWPESAV-----ALGLLK------------NGSLLYRLLRKLERLIYRRADAIVVI 172 (394)
T ss_pred HHHHHh-------cCCCEEEEehhhcchhHH-----HccCcc------------ccchHHHHHHHHHHHHHhcCCEEEEE
Confidence 333332 378999999964321100 000000 00000012234566778899999999
Q ss_pred CHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCcc
Q 008488 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (564)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (564)
|+..++.+.. ++.+ ..++.+++||+|...+.+.... .. +.+...+ .+.+
T Consensus 173 s~~~~~~~~~---~~~~------~~~~~~i~~~~~~~~~~~~~~~-------------------~~-~~~~~~~--~~~~ 221 (394)
T cd03794 173 SPGMREYLVR---RGVP------PEKISVIPNGVDLELFKPPPAD-------------------ES-LRKELGL--DDKF 221 (394)
T ss_pred CHHHHHHHHh---cCCC------cCceEEcCCCCCHHHcCCccch-------------------hh-hhhccCC--CCcE
Confidence 9999999873 3333 2389999999998877654321 00 2223322 3457
Q ss_pred EEEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhC-CCceEEEeccChHHHHHHHHhcCEEE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~-~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+++|+|++.+.||++.+++|+.++.+ ++++++|+|.|+. .+.++++.... ..++.+.+..+.+++..+|+.||+++
T Consensus 222 ~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 299 (394)
T cd03794 222 VVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPE--KEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGL 299 (394)
T ss_pred EEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCccc--HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeE
Confidence 99999999999999999999999976 4899999999873 34444433322 25688888778888999999999999
Q ss_pred EcCCCCCC-----cHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 482 IPSRFEPC-----GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 482 ~PS~~E~~-----gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+||..|++ |++++|||+||+|||+++.++..+++.++.+|++ +++.|+++++++|...
T Consensus 300 ~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~----------~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 300 VPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLV----------VPPGDPEALAAAILEL 362 (394)
T ss_pred EeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceE----------eCCCCHHHHHHHHHHH
Confidence 99998875 8889999999999999999999999999899998 6888999998887543
No 50
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=1.3e-28 Score=254.09 Aligned_cols=323 Identities=20% Similarity=0.197 Sum_probs=227.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|...+.+ ||.+.++..|+++|.+.||+|.+++......... .....|+++.
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~i~v~ 55 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---------------------ELEEAGVPVY 55 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---------------------HHHhcCCeEE
Confidence 78999987543 9999999999999999999999998653211000 0001356665
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+..+.... . ......+.++++. .+|| +||+|.+...+....
T Consensus 56 ~~~~~~~~~---------------------~----~~~~~~~~~~~~~------------~~~d-iv~~~~~~~~~~~~~ 97 (365)
T cd03807 56 CLGKRPGRP---------------------D----PGALLRLYKLIRR------------LRPD-VVHTWMYHADLYGGL 97 (365)
T ss_pred EEecccccc---------------------c----HHHHHHHHHHHHh------------hCCC-EEEeccccccHHHHH
Confidence 554321100 0 0111223333332 2599 899998776666555
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
..... .+.+++++.|+...... .+ .......+.+.....+|.++++|+
T Consensus 98 ~~~~~------~~~~~i~~~~~~~~~~~-------------~~-------------~~~~~~~~~~~~~~~~~~~i~~s~ 145 (365)
T cd03807 98 AARLA------GVPPVIWGIRHSDLDLG-------------KK-------------STRLVARLRRLLSSFIPLIVANSA 145 (365)
T ss_pred HHHhc------CCCcEEEEecCCccccc-------------ch-------------hHhHHHHHHHHhccccCeEEeccH
Confidence 55432 37899999996543110 00 001122334445668899999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.. ++++.+ ++.+++||+|...+.+.... +..++++++++. +.+++
T Consensus 146 ~~~~~~~~---~~~~~~------~~~vi~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~i 196 (365)
T cd03807 146 AAAEYHQA---IGYPPK------KIVVIPNGVDTERFSPDLDA------------------RARLREELGLPE--DTFLI 196 (365)
T ss_pred HHHHHHHH---cCCChh------heeEeCCCcCHHhcCCcccc------------------hHHHHHhcCCCC--CCeEE
Confidence 99999886 355433 88999999998877654321 445667888864 44799
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHH-h--CCCceEEEeccChHHHHHHHHhcCEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-L--YPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~-~--~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
+++|++.+.||++.+++|+.++.+ ++++++|+|.++. ...++.+.. . ..+++.+.+. .+++..+|+.||++
T Consensus 197 ~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~ 272 (365)
T cd03807 197 GIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD--RANLELLALKELGLEDKVILLGE--RSDVPALLNALDVF 272 (365)
T ss_pred EEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc--hhHHHHHHHHhcCCCceEEEccc--cccHHHHHHhCCEE
Confidence 999999999999999999999866 6899999998873 222333322 2 2345666553 34566899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++||.+|++|++++|||+||+|||+++.|+..|++.+ +|++ +++.|+++++++|..
T Consensus 273 v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~----------~~~~~~~~l~~~i~~ 328 (365)
T cd03807 273 VLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFL----------VPPGDPEALAEAIEA 328 (365)
T ss_pred EeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEE----------eCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 8888 678888888887754
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.96 E-value=7.8e-28 Score=247.27 Aligned_cols=333 Identities=26% Similarity=0.360 Sum_probs=232.4
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..+.|. .||.+.++..|+++|.+.||+|.++++.......... . ......
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~----------------~------~~~~~~ 56 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE----------------V------GGIVVV 56 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee----------------e------cCccee
Confidence 799999987774 7999999999999999999999999987443222100 0 000000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.. ... . . .........+.......++. .++| +||+|.+........
T Consensus 57 ~~--~~~-~--------~----------~~~~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~~~~ 102 (374)
T cd03801 57 RP--PPL-L--------R----------VRRLLLLLLLALRLRRLLRR------------ERFD-VVHAHDWLALLAAAL 102 (374)
T ss_pred cC--Ccc-c--------c----------cchhHHHHHHHHHHHHHhhh------------cCCc-EEEEechhHHHHHHH
Confidence 00 000 0 0 00001111122222222222 2599 899998776665543
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
.+.. .+.|+++++|+..+...... ..........+.+..+..+|.++++|+
T Consensus 103 ~~~~-------~~~~~i~~~h~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~d~~i~~s~ 153 (374)
T cd03801 103 AARL-------LGIPLVLTVHGLEFGRPGNE----------------------LGLLLKLARALERRALRRADRIIAVSE 153 (374)
T ss_pred HHHh-------cCCcEEEEeccchhhccccc----------------------hhHHHHHHHHHHHHHHHhCCEEEEecH
Confidence 3332 58899999996554211100 000011233456677889999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+ .++.+. .++.+++||+|...+.+.. ...+.....+ .+.+.+
T Consensus 154 ~~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~--~~~~~i 202 (374)
T cd03801 154 ATREELRE--LGGVPP------EKITVIPNGVDTERFRPAP---------------------RAARRRLGIP--EDEPVI 202 (374)
T ss_pred HHHHHHHh--cCCCCC------CcEEEecCcccccccCccc---------------------hHHHhhcCCc--CCCeEE
Confidence 99999987 233321 3899999999988776431 1122222222 345799
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHh--CCCceEEEeccChHHHHHHHHhcCEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEIL--YPEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~--~~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+|+|++.+.||++.+++++..+.+ ++++|+|+|.++ ..+.++++..+ .+.++.+.+..+.+++..+++.||+++
T Consensus 203 ~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 280 (374)
T cd03801 203 LFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFV 280 (374)
T ss_pred EEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEE
Confidence 999999999999999999999876 589999999776 44455554433 335788888888888999999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|+..|++|++++|||++|+|||+++.++..|++.++.+|++ +++.|+++++++|..
T Consensus 281 ~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~----------~~~~~~~~l~~~i~~ 337 (374)
T cd03801 281 LPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLL----------VPPGDPEALAEAILR 337 (374)
T ss_pred ecchhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEE----------eCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 688888888887765
No 52
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=1.3e-28 Score=255.73 Aligned_cols=329 Identities=19% Similarity=0.166 Sum_probs=226.3
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..+.|. ..||++.++.+|+++|+++||+|.++++............ .....
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~---------------------~~~~~- 57 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLR---------------------AALRL- 57 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccch---------------------hcccc-
Confidence 689999887772 4899999999999999999999999998754322211000 00000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
...... ......+............+ .++| |||+|.+.....
T Consensus 58 -~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~--- 99 (365)
T cd03809 58 -LLRLPR---------------------RLLWGLLFLLRAGDRLLLLL------------LGLD-LLHSPHNTAPLL--- 99 (365)
T ss_pred -cccccc---------------------ccccchhhHHHHHHHHHhhh------------cCCC-eeeecccccCcc---
Confidence 000000 00001111111112222222 2599 899997665544
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
+. .+.|+++++|+..+.. + +..... ........+++..++.+|.++++|+
T Consensus 100 --~~-------~~~~~i~~~hd~~~~~-~----------~~~~~~----------~~~~~~~~~~~~~~~~~d~~i~~s~ 149 (365)
T cd03809 100 --RL-------RGVPVVVTIHDLIPLR-F----------PEYFSP----------GFRRYFRRLLRRALRRADAIITVSE 149 (365)
T ss_pred --cC-------CCCCEEEEeccchhhh-C----------cccCCH----------HHHHHHHHHHHHHHHHcCEEEEccH
Confidence 11 4899999999654311 0 000000 0011234566778899999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+ .++.+.+ ++.+++||+|...+.+... +. +.....+ .+.++|
T Consensus 150 ~~~~~~~~--~~~~~~~------~~~vi~~~~~~~~~~~~~~--------------------~~-~~~~~~~--~~~~~i 198 (365)
T cd03809 150 ATKRDLLR--YLGVPPD------KIVVIPLGVDPRFRPPPAE--------------------AE-VLRALYL--LPRPYF 198 (365)
T ss_pred HHHHHHHH--HhCcCHH------HEEeeccccCccccCCCch--------------------HH-HHHHhcC--CCCCeE
Confidence 99999987 2443333 8899999999988765432 11 2233332 245799
Q ss_pred EEEeccccccCHHHHHHHHHhcccC--CeEEEEEeCCChhhHHHHHHHHH-hCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLEI-LYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~~--~v~lvIvG~g~~~~~~~l~~L~~-~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
+|+|++.+.||++.+++++..+.+. +++++++|.+........+.+.. ....++.+.+..+.+++..+++.||++++
T Consensus 199 ~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ 278 (365)
T cd03809 199 LYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVF 278 (365)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcc
Confidence 9999999999999999999999773 69999999876433443333211 23467888888889999999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
||.+|++|++++|||++|+|||+++.|++.|++.+ +|++ +++.|+++++++|.+
T Consensus 279 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~----------~~~~~~~~~~~~i~~ 332 (365)
T cd03809 279 PSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALY----------FDPLDPEALAAAIER 332 (365)
T ss_pred cchhccCCCCHHHHhcCCCcEEecCCCCccceecC--ceee----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999864 5776 688889999888765
No 53
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.96 E-value=3.5e-28 Score=260.74 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=149.7
Q ss_pred hcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH--
Q 008488 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE-- 393 (564)
Q Consensus 316 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 393 (564)
.+| ++++|...++.+.+ .++++.+ ++.+||||+|+..|.|.... ....+..
T Consensus 339 ~sd-~v~~s~~v~~~l~~--~lgip~~------KI~VIyNGVD~~rf~p~~~~------------------~~~~r~~~~ 391 (578)
T PRK15490 339 GVD-FMSNNHCVTRHYAD--WLKLEAK------HFQVVYNGVLPPSTEPSSEV------------------PHKIWQQFT 391 (578)
T ss_pred cch-hhhccHHHHHHHHH--HhCCCHH------HEEEEeCCcchhhcCccchh------------------hHHHHHHhh
Confidence 344 77888888888876 3566655 89999999999888775321 1122332
Q ss_pred hCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHH
Q 008488 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPL 469 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~ 469 (564)
.+++ .+.++++++||+.++||.+.+++++.++.+ ++++|+|+|+|+ .++.++++..+++ +++.+.+. .++
T Consensus 392 ~~l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~elgL~d~V~FlG~--~~D 465 (578)
T PRK15490 392 QKTQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQLGILERILFVGA--SRD 465 (578)
T ss_pred hccC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHHcCCCCcEEECCC--hhh
Confidence 3343 234789999999999999999999988755 789999999987 4566777766554 56777765 345
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
+..+|+.+|++|+||.+|+||++++|||+||+|||+|+.||..|+|.++.+|++ +++.|++++++++
T Consensus 466 v~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~L----------Vp~~D~~aLa~ai 532 (578)
T PRK15490 466 VGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFI----------LDDAQTVNLDQAC 532 (578)
T ss_pred HHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEE----------ECCCChhhHHHHH
Confidence 677999999999999999999999999999999999999999999999999999 6788776666554
No 54
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=3.5e-29 Score=273.08 Aligned_cols=253 Identities=17% Similarity=0.206 Sum_probs=187.7
Q ss_pred CCCEEEEEcCCC-cchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 227 GEDVVFVANDWH-TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 227 ~pDvIih~h~~~-~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
++| |+|+|+.. .+++.+.++.. .++|+|+|.|++....+.. ++....+.... ..+.....
T Consensus 173 ~~d-viH~~s~~~~g~~~~~~~~~-------~~~p~I~t~Hg~~~~e~~~--~~~~~~~~~~~---------~~~~~~~~ 233 (475)
T cd03813 173 KAD-VYHAVSTGYAGLLGALAKAR-------RGTPFLLTEHGIYTRERKI--ELLQADWEMSY---------FRRLWIRF 233 (475)
T ss_pred CCC-EEeccCcchHHHHHHHHHHH-------hCCCEEEecCCccHHHHHH--HHHhcccchHH---------HHHHHHHH
Confidence 589 99999743 34455555554 4899999999653211100 00000000000 00000001
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
...+.+..++.||.|+++|+..++.+.. +|++.+ ++.+||||+|.+.|.+....
T Consensus 234 ~~~l~~~~~~~ad~Ii~~s~~~~~~~~~---~g~~~~------ki~vIpNgid~~~f~~~~~~----------------- 287 (475)
T cd03813 234 FESLGRLAYQAADRITTLYEGNRERQIE---DGADPE------KIRVIPNGIDPERFAPARRA----------------- 287 (475)
T ss_pred HHHHHHHHHHhCCEEEecCHHHHHHHHH---cCCCHH------HeEEeCCCcCHHHcCCcccc-----------------
Confidence 2234566778999999999999887765 666654 89999999999888765320
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCC--hhhHHHHHHHHHhCC--Cce
Q 008488 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK--KPMEKQLEQLEILYP--EKA 459 (564)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~--~~~~~~l~~L~~~~~--~~v 459 (564)
. ...+.++|+|+||+.+.||++.+++|++.+.+ ++++++|+|.++ +.+.+.++++..+++ +++
T Consensus 288 ---------~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V 356 (475)
T cd03813 288 ---------R--PEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNV 356 (475)
T ss_pred ---------c--cCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeE
Confidence 0 12345899999999999999999999999876 799999999984 456777888877654 578
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccccccc------CcceeEeecccccccc
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDVIY 533 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~------g~~G~l~~~~~~~~~~ 533 (564)
.+.+ .+++..+|+.+|++++||..|++|++++|||+||+|||+|+.||+.|++.+ |.+|++
T Consensus 357 ~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~l---------- 423 (475)
T cd03813 357 KFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEV---------- 423 (475)
T ss_pred EEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEE----------
Confidence 8777 445667999999999999999999999999999999999999999999998 679998
Q ss_pred CCCCCHHHHHhhccc
Q 008488 534 SSPSYNSRVIPRIPL 548 (564)
Q Consensus 534 v~~~d~~aLa~aI~~ 548 (564)
+++.|+++++++|.+
T Consensus 424 v~~~d~~~la~ai~~ 438 (475)
T cd03813 424 VPPADPEALARAILR 438 (475)
T ss_pred ECCCCHHHHHHHHHH
Confidence 799999999998764
No 55
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.1e-27 Score=253.29 Aligned_cols=243 Identities=15% Similarity=0.089 Sum_probs=172.4
Q ss_pred CCCEEEEEcCCCcc---hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCcc
Q 008488 227 GEDVVFVANDWHTS---LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR 303 (564)
Q Consensus 227 ~pDvIih~h~~~~~---~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 303 (564)
+|| |||+|..... +.+.++++. .++|+|+++|+..+. .. ..+.. ......
T Consensus 100 ~~D-vV~~~~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~-~~------~~~~~------------~~~~~~ 152 (371)
T PLN02275 100 RPD-VFLVQNPPSVPTLAVVKLACWL-------RRAKFVIDWHNFGYT-LL------ALSLG------------RSHPLV 152 (371)
T ss_pred CCC-EEEEeCCCCcHHHHHHHHHHHH-------hCCCEEEEcCCccHH-HH------hcccC------------CCCHHH
Confidence 699 8999864432 233334433 378999999965320 00 00000 000001
Q ss_pred CchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhcc
Q 008488 304 GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383 (564)
Q Consensus 304 ~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (564)
.....+++...+.+|.++++|+.+++.+.+ .+|+ ++.+|+||. .+.|.|....
T Consensus 153 ~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~--~~g~---------~i~vi~n~~-~~~f~~~~~~--------------- 205 (371)
T PLN02275 153 RLYRWYERHYGKMADGHLCVTKAMQHELDQ--NWGI---------RATVLYDQP-PEFFRPASLE--------------- 205 (371)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHH--hcCC---------CeEEECCCC-HHHcCcCCch---------------
Confidence 112334566778999999999999999875 1233 378999995 4666654310
Q ss_pred HHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcc-------------------cCCeEEEEEeCCChhh
Q 008488 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-------------------KENVQIIVLGTGKKPM 444 (564)
Q Consensus 384 ~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~-------------------~~~v~lvIvG~g~~~~ 444 (564)
. .+.. +...+++++||+.++||++.+++|+..+. .++++|+|+|+|+ .
T Consensus 206 --------~--~~~~-~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~--~ 272 (371)
T PLN02275 206 --------I--RLRP-NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP--Q 272 (371)
T ss_pred --------h--cccC-CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC--C
Confidence 0 0111 12357889999999999999999998762 2689999999998 4
Q ss_pred HHHHHHHHHhCC-CceEEEec-cChHHHHHHHHhcCEEEEcC--C-CCCCcHHHHHHHHcCCcEEEcCccccccccccCc
Q 008488 445 EKQLEQLEILYP-EKARGVAK-FNIPLAHMIIAGADFILIPS--R-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF 519 (564)
Q Consensus 445 ~~~l~~L~~~~~-~~v~~~~~-~~~~~~~~il~~ADv~v~PS--~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~ 519 (564)
++.++++..+.+ .++.+++. .+.+++..+|+.||++++|+ . .|++|++++|||+||+|||+++.||..|+|+++.
T Consensus 273 ~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~ 352 (371)
T PLN02275 273 KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGK 352 (371)
T ss_pred HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCC
Confidence 566666666554 35777775 57889999999999999864 2 3899999999999999999999999999999999
Q ss_pred ceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 520 TGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 520 ~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|++ ++ |+++||++|.+
T Consensus 353 ~G~l----------v~--~~~~la~~i~~ 369 (371)
T PLN02275 353 NGLL----------FS--SSSELADQLLE 369 (371)
T ss_pred CeEE----------EC--CHHHHHHHHHH
Confidence 9998 44 68999998754
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=1.4e-27 Score=245.44 Aligned_cols=322 Identities=20% Similarity=0.218 Sum_probs=221.9
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+.. .||...++..|+++|.++||+|.++++...... .....|++.+
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----------------------~~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-----------------------ELEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-----------------------ccccCCceEE
Confidence 68999975 488899999999999999999999997633211 1112355555
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.++...... ...+.......+.+.+++ .+|| +||+|.+...++...
T Consensus 52 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~------------~~~d-vv~~~~~~~~~~~~~ 97 (359)
T cd03808 52 PIPLDRRGI---------------------NPFKDLKALLRLYRLLRK------------ERPD-IVHTHTPKPGILGRL 97 (359)
T ss_pred ecccccccc---------------------ChHhHHHHHHHHHHHHHh------------cCCC-EEEEccccchhHHHH
Confidence 443221000 000111112222333332 3599 899998776666655
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
.+... ...++++++|+..+..... .+ .......+.+..+..+|.++++|+
T Consensus 98 ~~~~~------~~~~~i~~~~~~~~~~~~~-----------~~-------------~~~~~~~~~~~~~~~~d~ii~~s~ 147 (359)
T cd03808 98 AARLA------GVPKVIYTVHGLGFVFTSG-----------GL-------------KRRLYLLLERLALRFTDKVIFQNE 147 (359)
T ss_pred HHHHc------CCCCEEEEecCcchhhccc-----------hh-------------HHHHHHHHHHHHHhhccEEEEcCH
Confidence 55432 3667888888654311100 00 001123345667788999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+ ++... ....+.+++||+|...+.+.... . ..+.+.+
T Consensus 148 ~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---------------------------~--~~~~~~i 191 (359)
T cd03808 148 DDRDLALK---LGIIK----KKKTVLIPGSGVDLDRFSPSPEP---------------------------I--PEDDPVF 191 (359)
T ss_pred HHHHHHHH---hcCCC----cCceEEecCCCCChhhcCccccc---------------------------c--CCCCcEE
Confidence 99999887 22211 12367788999998877654310 0 2245799
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHH-hCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-LYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~-~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
+|+|++.+.||++.+++++..+.+ ++++|+|+|.++.........+.. ....++.+.+. .+++..+++.||++++
T Consensus 192 ~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ 269 (359)
T cd03808 192 LFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVL 269 (359)
T ss_pred EEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEe
Confidence 999999999999999999999874 789999999987432222111111 12246776665 4556789999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
||.+|++|++++|||+||+|||+++.++..|++.++.+|++ ++++|+++++++|.+
T Consensus 270 ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~----------~~~~~~~~~~~~i~~ 325 (359)
T cd03808 270 PSYREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFL----------VPPGDAEALADAIER 325 (359)
T ss_pred cCcccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEE----------ECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 688899999888765
No 57
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.4e-27 Score=258.01 Aligned_cols=189 Identities=15% Similarity=0.091 Sum_probs=148.7
Q ss_pred HHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHH
Q 008488 310 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 389 (564)
Q Consensus 310 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (564)
++.....+|.|+++|+++++.+.+. ++.+ .++.+++||+|+..+.+...
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~~--~~~~-------~~i~vvyp~vd~~~~~~~~~---------------------- 262 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEAL--WRIP-------ERIKRVYPPCDTSGLQALPL---------------------- 262 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHHH--cCCC-------CCeEEEcCCCCHHHcccCCc----------------------
Confidence 3444578999999999999998762 2221 26889999999765532110
Q ss_pred HHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCC----hhhHHHHHHHHHhCC--C
Q 008488 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILYP--E 457 (564)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~----~~~~~~l~~L~~~~~--~ 457 (564)
....+.++++++||++++||++.+++|+.++.+ ++++|+|+|++. .+..++++++..+++ +
T Consensus 263 -------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~ 335 (463)
T PLN02949 263 -------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDG 335 (463)
T ss_pred -------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCC
Confidence 001234789999999999999999999988643 589999999874 234466777776653 6
Q ss_pred ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccc-ccccc---CcceeEeecccccccc
Q 008488 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV-DTVEE---GFTGFQMGSFSVDVIY 533 (564)
Q Consensus 458 ~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~-e~v~~---g~~G~l~~~~~~~~~~ 533 (564)
++.+.+..+.+++..+|+.||++++||..|+||++++|||+||+|||+++.||.. |++.+ +.+||+
T Consensus 336 ~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l---------- 405 (463)
T PLN02949 336 DVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFL---------- 405 (463)
T ss_pred cEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCccccc----------
Confidence 7999988898999999999999999999999999999999999999999999975 77765 678997
Q ss_pred CCCCCHHHHHhhccc
Q 008488 534 SSPSYNSRVIPRIPL 548 (564)
Q Consensus 534 v~~~d~~aLa~aI~~ 548 (564)
+ .|++++|++|.+
T Consensus 406 ~--~~~~~la~ai~~ 418 (463)
T PLN02949 406 A--TTVEEYADAILE 418 (463)
T ss_pred C--CCHHHHHHHHHH
Confidence 3 378888887754
No 58
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.96 E-value=2e-27 Score=247.01 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=212.2
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||+||+.. .|. .||.+.++.+|+++|+++||+|.+++........ ... . . ..+....
T Consensus 1 kI~~v~~~-~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--~~~--------~--~--------~~~~~~~ 57 (366)
T cd03822 1 RIALVSPY-PPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSL--LYG--------G--E--------QEVVRVI 57 (366)
T ss_pred CeEEecCC-CCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcc--cCC--------C--c--------ccceeee
Confidence 79999875 553 7999999999999999999999999865321110 000 0 0 0000000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH-
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC- 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~- 244 (564)
.. + +.. ....+.+.++. .+|| |||+|.|.+.+.+.
T Consensus 58 ~~-----------------~----------~~~----~~~~~~~~~~~------------~~~d-ii~~~~~~~~~~~~~ 93 (366)
T cd03822 58 VL-----------------D----------NPL----DYRRAARAIRL------------SGPD-VVVIQHEYGIFGGEA 93 (366)
T ss_pred ec-----------------C----------Cch----hHHHHHHHHhh------------cCCC-EEEEeeccccccchh
Confidence 00 0 000 11122222332 2599 88888765433222
Q ss_pred --HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 245 --YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 245 --~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
.+.... ...+.|+|+++|+..... . ......+++..+..+|.+++
T Consensus 94 ~~~~~~~~----~~~~~~~i~~~h~~~~~~------------~-----------------~~~~~~~~~~~~~~~d~ii~ 140 (366)
T cd03822 94 GLYLLLLL----RGLGIPVVVTLHTVLLHE------------P-----------------RPGDRALLRLLLRRADAVIV 140 (366)
T ss_pred hHHHHHHH----hhcCCCEEEEEecCCccc------------c-----------------chhhhHHHHHHHhcCCEEEE
Confidence 222111 014889999999651100 0 01123456677889999999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|....+++... .. ..++.+|+||+|...+.+... . ++...+ .+.
T Consensus 141 ~s~~~~~~~~~~--~~--------~~~~~~i~~~~~~~~~~~~~~----------------------~-~~~~~~--~~~ 185 (366)
T cd03822 141 MSSELLRALLLR--AY--------PEKIAVIPHGVPDPPAEPPES----------------------L-KALGGL--DGR 185 (366)
T ss_pred eeHHHHHHHHhh--cC--------CCcEEEeCCCCcCcccCCchh----------------------h-HhhcCC--CCC
Confidence 974444443321 11 238999999999776654321 0 222222 245
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHH-------HHHHHHhCCCceEEEec-cChHHHHH
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQ-------LEQLEILYPEKARGVAK-FNIPLAHM 472 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~-------l~~L~~~~~~~v~~~~~-~~~~~~~~ 472 (564)
++++|+|++.+.||++.+++|+.++.+ ++++|+|+|.+.+..... ++++. ...++.+++. .+.+++..
T Consensus 186 ~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~--~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 186 PVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLG--LADRVIFINRYLPDEELPE 263 (366)
T ss_pred eEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcC--CCCcEEEecCcCCHHHHHH
Confidence 799999999999999999999999876 689999999886433222 33332 3357888888 57888889
Q ss_pred HHHhcCEEEEcCCCC--CCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 473 IIAGADFILIPSRFE--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 473 il~~ADv~v~PS~~E--~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|+.||++++||.+| ++|++++|||+||+|||+++.|+ .+.+.++.+|++ +++.|+++++++|..
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~----------~~~~d~~~~~~~l~~ 330 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLL----------VPPGDPAALAEAIRR 330 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEE----------EcCCCHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999 777788889998 688889999888754
No 59
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.96 E-value=2.2e-27 Score=243.05 Aligned_cols=314 Identities=22% Similarity=0.253 Sum_probs=214.3
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..+ + .||.+.++..|+++|.+.||+|.+++............. .. ......
T Consensus 1 kIl~~~~~~-~---~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~------------~~-------~~~~~~ 57 (353)
T cd03811 1 KILFVIPSL-G---GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPS------------NV-------KLIPVR 57 (353)
T ss_pred CeEEEeecc-c---CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccccccc------------ch-------hhhcee
Confidence 789999863 2 699999999999999999999999997643222110000 00 000000
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCC-CcchHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW-HTSLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~-~~~~~~~ 244 (564)
..... .+ ....+.....+.++.. +|| +||+|.+ ...++..
T Consensus 58 ~~~~~-------------~~-------------~~~~~~~~~~~~~~~~------------~~d-ii~~~~~~~~~~~~~ 98 (353)
T cd03811 58 VLKLK-------------SL-------------RDLLAILRLRRLLRKE------------KPD-VVISHLTTTPNVLAL 98 (353)
T ss_pred eeecc-------------cc-------------cchhHHHHHHHHHHhc------------CCC-EEEEcCccchhHHHH
Confidence 00000 00 0011222333333332 599 8888876 3333333
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
+.+. .+.|+++++|+........ . .......+..+..+|.++++|
T Consensus 99 ~~~~--------~~~~~i~~~~~~~~~~~~~------------~---------------~~~~~~~~~~~~~~d~ii~~s 143 (353)
T cd03811 99 LAAR--------LGTKLIVWEHNSLSLELKR------------K---------------LRLLLLIRKLYRRADKIVAVS 143 (353)
T ss_pred HHhh--------cCCceEEEEcCcchhhhcc------------c---------------hhHHHHHHhhccccceEEEec
Confidence 2221 1689999999654311100 0 000034667788999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+..++.+.+. ++.+ ..++.+|+||+|...+.+...+ .. ..+.+ .+.++
T Consensus 144 ~~~~~~~~~~--~~~~------~~~~~vi~~~~~~~~~~~~~~~-------------------~~---~~~~~--~~~~~ 191 (353)
T cd03811 144 EGVKEDLLKL--LGIP------PDKIEVIYNPIDIEEIRALAEE-------------------PL---ELGIP--PDGPV 191 (353)
T ss_pred cchhhhHHHh--hcCC------ccccEEecCCcChhhcCcccch-------------------hh---hcCCC--CCceE
Confidence 9999998872 3322 2389999999998877654321 00 22222 35589
Q ss_pred EEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEE
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
++|+||+.+.||++.++++++.+.+ ++++|+|+|.++ ..+.++++..+++ +++.+.+..+ ++..+++.||++
T Consensus 192 i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~ 267 (353)
T cd03811 192 ILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP--LREELEALAKELGLADRVHFLGFQS--NPYPYLKAADLF 267 (353)
T ss_pred EEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc--cHHHHHHHHHhcCCCccEEEecccC--CHHHHHHhCCEE
Confidence 9999999999999999999999976 589999999887 2344444444443 4577666533 356799999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHH
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRV 542 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aL 542 (564)
++||.+|++|++++|||++|+|||+++.||+.|++.++.+|++ +++.|.+++
T Consensus 268 i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~----------~~~~~~~~~ 319 (353)
T cd03811 268 VLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLL----------VPVGDEAAL 319 (353)
T ss_pred EeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEE----------ECCCCHHHH
Confidence 9999999999999999999999999999999999999999998 688888887
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.96 E-value=6.4e-27 Score=241.52 Aligned_cols=336 Identities=24% Similarity=0.300 Sum_probs=229.7
Q ss_pred EEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEEE
Q 008488 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (564)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (564)
|+++++.++| ...||.+.++..++++|.+.||+|+++++............... .....
T Consensus 1 iLii~~~~p~-~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~--------------------~~~~~ 59 (377)
T cd03798 1 ILVISSLYPP-PNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRL--------------------VGVER 59 (377)
T ss_pred CeEeccCCCC-CCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccccc--------------------ccccc
Confidence 5788877544 23589999999999999999999999998643222211000000 00000
Q ss_pred EeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCC-cchHHHH
Q 008488 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPCY 245 (564)
Q Consensus 167 v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~-~~~~~~~ 245 (564)
........ . ..........+.......++.. .+++| +||+|... ...+...
T Consensus 60 ~~~~~~~~----------~-------~~~~~~~~~~~~~~~~~~l~~~----------~~~~d-ii~~~~~~~~~~~~~~ 111 (377)
T cd03798 60 LPVLLPVV----------P-------LLKGPLLYLLAARALLKLLKLK----------RFRPD-LIHAHFAYPDGFAAAL 111 (377)
T ss_pred cccCcchh----------h-------ccccchhHHHHHHHHHHHHhcc----------cCCCC-EEEEeccchHHHHHHH
Confidence 00000000 0 0001112223333344444311 13699 78877433 3334444
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
+... .++|+++++|+........ ......+++..+..+|.++++|+
T Consensus 112 ~~~~-------~~~~~i~~~h~~~~~~~~~---------------------------~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 112 LKRK-------LGIPLVVTLHGSDVNLLPR---------------------------KRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHh-------cCCCEEEEeecchhcccCc---------------------------hhhHHHHHHHHHhcCCeEEeCCH
Confidence 4433 3689999999654411000 00134567778899999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
..++.+.+ .+++ ..++.+++||+|...+.+.... . . .+.+.. .+.+.+
T Consensus 158 ~~~~~~~~---~~~~------~~~~~~i~~~~~~~~~~~~~~~------------------~-~--~~~~~~--~~~~~i 205 (377)
T cd03798 158 ALADELKA---LGID------PEKVTVIPNGVDTERFSPADRA------------------E-A--RKLGLP--EDKKVI 205 (377)
T ss_pred HHHHHHHH---hcCC------CCceEEcCCCcCcccCCCcchH------------------H-H--HhccCC--CCceEE
Confidence 99999886 2222 3389999999999888765421 0 0 223332 345799
Q ss_pred EEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeccChHHHHHHHHhcCEEE
Q 008488 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 406 ~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~--~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
+++|++.+.||++.++++++.+.+ ++++++|+|.++. .+.++++.... ..++.+.+..+.+++..+++.||+++
T Consensus 206 ~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i 283 (377)
T cd03798 206 LFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL--REALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFV 283 (377)
T ss_pred EEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc--hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeee
Confidence 999999999999999999999976 5899999998873 34444444433 35788888889889999999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+||..|++|++++|||++|+|+|+++.|+..|++.++.+|++ +++.|+++++++|...
T Consensus 284 ~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~----------~~~~~~~~l~~~i~~~ 341 (377)
T cd03798 284 LPSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLL----------VPPGDPEALAEAILRL 341 (377)
T ss_pred cchhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeE----------ECCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6888999888877553
No 61
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.96 E-value=9.5e-28 Score=257.48 Aligned_cols=412 Identities=18% Similarity=0.214 Sum_probs=243.2
Q ss_pred EEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeCCCccc-cccCcceEEE--E-----EeCCeeeeEEEEEeeec
Q 008488 90 VGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPRYDQYK-DAWDTDVVIE--L-----KVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 90 vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~~~~~~-~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~ 160 (564)
+++|+.. |.||+-+++..=++.+.+ .|-+..++.|...+.. ...+.....+ + .....--.+++...-.+
T Consensus 7 ~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 5556543 789999999998888765 5889999998754211 1110000000 0 00011123566666777
Q ss_pred CeeEEE-EeCC-------cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhh-ccCCCCCCCCCCCCCEE
Q 008488 161 GVDRVF-VDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVV 231 (564)
Q Consensus 161 gv~~~~-v~~~-------~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l-~~~~~~~~~~~~~pDvI 231 (564)
|-+.+. +|.. .++...|...| +-++..+.+|.+. ..|...+..+++-+... . +-++| |
T Consensus 85 G~P~viL~D~~~~~~~~~~~~~~lW~~~~--i~s~~~~~d~nea-~~fgy~~~~~i~~~~~~~~---------~~~~d-V 151 (590)
T cd03793 85 GYPKVVLFDIGSAAWKLDEWKGELWELCG--IGSPEGDRETNDA-IIFGFLVAWFLGEFAEQFD---------DEPAV-V 151 (590)
T ss_pred CCCeEEEEeCchhhhhHHHHHHHHHHHcC--CCCCCCCCcchHH-HHHHHHHHHHHHHHHhhcc---------CCCCe-E
Confidence 776554 3432 23344553332 4444455556443 33555444444433322 2 12588 9
Q ss_pred EEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccc-cccccccCCCCcccccccccccCCC---CCccCchh
Q 008488 232 FVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF-AFEDFGLLNLPAQFKSSFDFIDGYN---KPVRGRKI 307 (564)
Q Consensus 232 ih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~ 307 (564)
+|+|+|++++....+++.. .++|+|+|+|.... ||. +... ..+...++..++-. +.-...+.
T Consensus 152 iH~HeWm~g~a~~~lK~~~------~~VptVfTtHAT~~-GR~l~~g~-------~~~y~~l~~~~~d~eA~~~~I~~r~ 217 (590)
T cd03793 152 AHFHEWQAGVGLPLLRKRK------VDVSTIFTTHATLL-GRYLCAGN-------VDFYNNLDYFDVDKEAGKRGIYHRY 217 (590)
T ss_pred EEEcchhHhHHHHHHHHhC------CCCCEEEEeccccc-ccccccCC-------cccchhhhhcchhhhhhcccchHHH
Confidence 9999999999999999643 58899999997665 553 1110 11111111111100 00011234
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+++.+...||.+++||+.++.+... .++.+++ + +||||+|+..|.+..+. . ........+-.+..+
T Consensus 218 ~iE~~aa~~Ad~fttVS~it~~E~~~--Ll~~~pd------~--ViPNGid~~~f~~~~e~-~--~~~~~~k~ki~~f~~ 284 (590)
T cd03793 218 CIERAAAHCAHVFTTVSEITAYEAEH--LLKRKPD------V--VLPNGLNVKKFSALHEF-Q--NLHAQSKEKINEFVR 284 (590)
T ss_pred HHHHHHHhhCCEEEECChHHHHHHHH--HhCCCCC------E--EeCCCcchhhcccchhh-h--hhhHHhhhhhhHHHH
Confidence 56888899999999999999999997 5677654 3 99999999998765421 0 000000001112234
Q ss_pred HHHHHHhCCCCCCCccEEEE-Eecccc-ccCHHHHHHHHHhccc------CC---eEEEEEeCCC--------------h
Q 008488 388 EALQAEVGLPVDRNIPVIGF-IGRLEE-QKGSDILAAAIPHFIK------EN---VQIIVLGTGK--------------K 442 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~-iGrl~~-~KG~d~ll~A~~~l~~------~~---v~lvIvG~g~--------------~ 442 (564)
..++.+++++.+ .++++| +||++. +||+|.+|+|++++.. .+ +-|+|+=.+. +
T Consensus 285 ~~~~~~~~~~~d--~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~ 362 (590)
T cd03793 285 GHFYGHYDFDLD--KTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRK 362 (590)
T ss_pred HHHhhhcCCCCC--CeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHH
Confidence 446777787543 367777 799998 9999999999999865 22 2344442220 1
Q ss_pred hhHHHHHHHHH----h-------------------------------------------------------------C--
Q 008488 443 PMEKQLEQLEI----L-------------------------------------------------------------Y-- 455 (564)
Q Consensus 443 ~~~~~l~~L~~----~-------------------------------------------------------------~-- 455 (564)
.+++.++++.. + +
T Consensus 363 ~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N 442 (590)
T cd03793 363 QLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFN 442 (590)
T ss_pred HHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcC
Confidence 12222222100 0 0
Q ss_pred --C--CceEEEecc---C----hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccc----ccccccC-c
Q 008488 456 --P--EKARGVAKF---N----IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVEEG-F 519 (564)
Q Consensus 456 --~--~~v~~~~~~---~----~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e~v~~g-~ 519 (564)
. -+++++..| . .....+++++||++|+||++|+||++++|||+||+|+|+|+.+|+ .|++.++ .
T Consensus 443 ~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~ 522 (590)
T cd03793 443 SPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPES 522 (590)
T ss_pred CCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCC
Confidence 0 145566655 1 123456999999999999999999999999999999999999998 5666554 3
Q ss_pred ceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 520 TGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 520 ~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
.|+.+-+-... ..+.++++|+++|..
T Consensus 523 ~gi~V~~r~~~---~~~e~v~~La~~m~~ 548 (590)
T cd03793 523 YGIYIVDRRFK---SPDESVQQLTQYMYE 548 (590)
T ss_pred ceEEEecCCcc---chHHHHHHHHHHHHH
Confidence 56663111100 013456667776654
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.96 E-value=6e-27 Score=239.76 Aligned_cols=310 Identities=20% Similarity=0.192 Sum_probs=210.1
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++++..+.| .||.+.++..|+++|+++||+|.++++.... .... ....++.+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~---------------------~~~~~~~~~ 55 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY---------------------ELDPKIKVI 55 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc---------------------ccCCcccee
Confidence 79999987655 6999999999999999999999999987442 0100 011233333
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.+...... . .+ ........+.++++. .+|| +|+.|.+. ...+
T Consensus 56 ~~~~~~~~-~--------~~-------------~~~~~~~~~~~~l~~------------~~~d-~i~~~~~~---~~~~ 97 (348)
T cd03820 56 DLGDKRDS-K--------LL-------------ARFKKLRRLRKLLKN------------NKPD-VVISFLTS---LLTF 97 (348)
T ss_pred eccccccc-c--------hh-------------ccccchHHHHHhhcc------------cCCC-EEEEcCch---HHHH
Confidence 33211100 0 00 000111222222222 3699 78887765 1222
Q ss_pred HHhhccCCCCCCC-CeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 246 LKTMYKPKGMYKS-AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 246 l~~~~~~~~~~~~-~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
+.... .+ .|++++.|+....... ........+..++.+|.++++|
T Consensus 98 ~~~~~------~~~~~~i~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~d~ii~~s 143 (348)
T cd03820 98 LASLG------LKIVKLIVSEHNSPDAYKK----------------------------RLRRLLLRRLLYRRADAVVVLT 143 (348)
T ss_pred HHHHh------hccccEEEecCCCccchhh----------------------------hhHHHHHHHHHHhcCCEEEEeC
Confidence 22221 13 4899999954321100 0011124677889999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+..+..... .. ..++.+++||++...+.+.. ..+.+.
T Consensus 144 ~~~~~~~~~-----~~------~~~~~vi~~~~~~~~~~~~~--------------------------------~~~~~~ 180 (348)
T cd03820 144 EEDRALYYK-----KF------NKNVVVIPNPLPFPPEEPSS--------------------------------DLKSKR 180 (348)
T ss_pred HHHHHHhhc-----cC------CCCeEEecCCcChhhccccC--------------------------------CCCCcE
Confidence 999732221 11 23899999999987665420 124579
Q ss_pred EEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCEE
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
++|+|++.+.||++.++++++++.+ ++++|+|+|.++. +..++++..+++ .++.+.+. .+++..+|+.||++
T Consensus 181 i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~ 256 (348)
T cd03820 181 ILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPE--REALEALIKELGLEDRVILLGF--TKNIEEYYAKASIF 256 (348)
T ss_pred EEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCC--HHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEE
Confidence 9999999999999999999999974 7899999999873 444555555443 35555554 56677899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
++||.+|++|++++|||+||+|||+++.+ +..+++.++.+|++ +++.|+++++++|.+.
T Consensus 257 i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~i~~l 316 (348)
T cd03820 257 VLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLL----------VPNGDVEALAEALLRL 316 (348)
T ss_pred EeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEE----------eCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999975 56677777779998 6888888988887654
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.95 E-value=3.3e-27 Score=246.97 Aligned_cols=178 Identities=20% Similarity=0.271 Sum_probs=151.7
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+.+..++.+|.++++|+.+++.+.+. ++ .+..+|+||+|.+.|.+...
T Consensus 145 ~~~~~~~~~~d~ii~~S~~~~~~~~~~--~~---------~~~~vi~~~~d~~~~~~~~~-------------------- 193 (351)
T cd03804 145 IWDRRSAARVDYFIANSRFVARRIKKY--YG---------RDATVIYPPVDTDRFTPAEE-------------------- 193 (351)
T ss_pred HHHHHHhcCCCEEEECCHHHHHHHHHH--hC---------CCcEEECCCCCHhhcCcCCC--------------------
Confidence 455667789999999999999998752 22 15678999999988765421
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccCh
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~ 467 (564)
..+.++|+||+.+.||++.+++|++++ +++|+|+|+|+. ++.+++ ....++.+.+..+.
T Consensus 194 -------------~~~~il~~G~~~~~K~~~~li~a~~~~---~~~l~ivG~g~~--~~~l~~---~~~~~V~~~g~~~~ 252 (351)
T cd03804 194 -------------KEDYYLSVGRLVPYKRIDLAIEAFNKL---GKRLVVIGDGPE--LDRLRA---KAGPNVTFLGRVSD 252 (351)
T ss_pred -------------CCCEEEEEEcCccccChHHHHHHHHHC---CCcEEEEECChh--HHHHHh---hcCCCEEEecCCCH
Confidence 235799999999999999999999988 389999999973 344443 34567999999999
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+++..+++.||++++||. |++|++++|||+||+|||+++.||..|++.++.+|++ ++++|+++++++|.
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~----------~~~~~~~~la~~i~ 321 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGIL----------FEEQTVESLAAAVE 321 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEE----------eCCCCHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999998 78999999998875
Q ss_pred c
Q 008488 548 L 548 (564)
Q Consensus 548 ~ 548 (564)
+
T Consensus 322 ~ 322 (351)
T cd03804 322 R 322 (351)
T ss_pred H
Confidence 4
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.95 E-value=4e-27 Score=254.92 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=162.7
Q ss_pred CCCCEEEEEcC-CCcchH--HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCc
Q 008488 226 YGEDVVFVAND-WHTSLI--PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPV 302 (564)
Q Consensus 226 ~~pDvIih~h~-~~~~~~--~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (564)
+.|| |||.+. .+.++. +..++..+ + |+|.++|.... . .+..... + .+
T Consensus 433 f~PD-VVHLatP~~LGw~~~Glr~ArKl-------~-PVVasyHTny~-e-----Yl~~y~~------------g---~L 482 (794)
T PLN02501 433 KDAD-IAILEEPEHLNWYHHGKRWTDKF-------N-HVVGVVHTNYL-E-----YIKREKN------------G---AL 482 (794)
T ss_pred cCCC-EEEECCchhhccHHHHHHHHHHc-------C-CeEEEEeCCcH-H-----HHhHhcc------------h---hH
Confidence 4699 888886 455666 44444443 5 79999994221 0 0000000 0 01
Q ss_pred cCchhHHHHHHHHh--cceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhh
Q 008488 303 RGRKINWMKAGILE--SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (564)
Q Consensus 303 ~~~~~~~~k~~~~~--ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~ 380 (564)
......++...+.. ||.|+++|..+++ +.. . .+. ..||||++.|.|...
T Consensus 483 ~~~llk~l~~~v~r~hcD~VIaPS~atq~-L~~---~-----------vI~-nVnGVDte~F~P~~r------------- 533 (794)
T PLN02501 483 QAFFVKHINNWVTRAYCHKVLRLSAATQD-LPK---S-----------VIC-NVHGVNPKFLKIGEK------------- 533 (794)
T ss_pred HHHHHHHHHHHHHHhhCCEEEcCCHHHHH-hcc---c-----------cee-ecccccccccCCcch-------------
Confidence 11122233344443 8999999977773 321 0 222 337999999988642
Q ss_pred hccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCc
Q 008488 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEK 458 (564)
Q Consensus 381 ~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~ 458 (564)
...++++|++... +.++|+|||.++||++.|++|++.+.+ ++++|+|+|+|+ .++.++++..+++.+
T Consensus 534 -------~~~~r~lgi~~~~--kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP--~reeLe~la~eLgL~ 602 (794)
T PLN02501 534 -------VAEERELGQQAFS--KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGE--DAHEVQRAAKRLDLN 602 (794)
T ss_pred -------hHHHHhcCCcccc--CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc--cHHHHHHHHHHcCCE
Confidence 2223566765432 458999999999999999999998865 689999999998 466677777666544
Q ss_pred eEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCC
Q 008488 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 459 v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d 538 (564)
+.+.+..+ +...+|+.+|+||+||.+|+||++++||||||+|||+++.+|. +++.++.+|++ .+|
T Consensus 603 V~FLG~~d--d~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll------------~~D 667 (794)
T PLN02501 603 LNFLKGRD--HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLT------------YKT 667 (794)
T ss_pred EEecCCCC--CHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEe------------cCC
Confidence 65554433 2336899999999999999999999999999999999999985 45777888885 256
Q ss_pred HHHHHhhccc
Q 008488 539 NSRVIPRIPL 548 (564)
Q Consensus 539 ~~aLa~aI~~ 548 (564)
+++++++|.+
T Consensus 668 ~EafAeAI~~ 677 (794)
T PLN02501 668 SEDFVAKVKE 677 (794)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.94 E-value=3.6e-25 Score=228.06 Aligned_cols=203 Identities=18% Similarity=0.215 Sum_probs=151.2
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
++..+.+.+.+.++++|+.+++.+.+ .|++. .+ .|+||+|++.|.|.... .
T Consensus 84 ~~y~~~m~~~~~vIavS~~t~~~L~~---~G~~~-------~i-~I~~GVD~~~f~p~~~~------------------~ 134 (335)
T PHA01633 84 EIVNKYLLQDVKFIPNSKFSAENLQE---VGLQV-------DL-PVFHGINFKIVENAEKL------------------V 134 (335)
T ss_pred HHHHHHHhcCCEEEeCCHHHHHHHHH---hCCCC-------ce-eeeCCCChhhcCccchh------------------h
Confidence 45666677788999999999999986 56542 23 47899999988775321 3
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C----CeEEEEEeCCChhhHHHHHHHHHhCCCceEE
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~----~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~ 461 (564)
.+++++++.+.+ +.++++++||+.++||++.+++|++++.+ + +++++++|.+ +++++. .++++.+
T Consensus 135 ~~~r~~~~~~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------~~~~l~--l~~~V~f 205 (335)
T PHA01633 135 PQLKQKLDKDFP-DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------QFTQLE--VPANVHF 205 (335)
T ss_pred HHHHHHhCcCCC-CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------HHHHcC--CCCcEEE
Confidence 456667765422 45789999999999999999999999865 3 4688888742 233332 4467887
Q ss_pred Eecc---ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccc--------
Q 008488 462 VAKF---NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD-------- 530 (564)
Q Consensus 462 ~~~~---~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~-------- 530 (564)
.+.+ +.+++..+|++||++|+||++|+||++++|||+||+|||+++.||+.|++.++ .|+++...+++
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~-~~~Li~~~~v~~~~~~~~g 284 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQ-WNLLIKSSKVEEYYDKEHG 284 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCc-cceeeCCCCHHHhcCcccC
Confidence 7533 56788899999999999999999999999999999999999999999986532 23433211110
Q ss_pred -cccCCCCCHHHHHhhcccC
Q 008488 531 -VIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 531 -~~~v~~~d~~aLa~aI~~~ 549 (564)
--.+++.|+++|+++|...
T Consensus 285 ~g~~~~~~d~~~la~ai~~~ 304 (335)
T PHA01633 285 QKWKIHKFQIEDMANAIILA 304 (335)
T ss_pred ceeeecCCCHHHHHHHHHHH
Confidence 0026788999999998755
No 66
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=7.2e-26 Score=241.49 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=140.8
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+++..++.+|.++++|+..++.+.+. .+.. ..++.+||||+|.+.|.|....
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~--~~~~------~~~v~vipngvd~~~f~~~~~~------------------- 216 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRL--APEA------AGRITAFPNGVDADFFSPDRDY------------------- 216 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHh--CCCC------CCCeEEeecccchhhcCCCccc-------------------
Confidence 456778889999999999999998752 2222 2378999999999988764321
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHH----HHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEE
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA----AAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll----~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~ 461 (564)
...++ .+.++|+|+||+.+.||++.++ ++++.+.+ ++++|+|+|+|+. +.++++... .++.+
T Consensus 217 -----~~~~~--~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~~--~~V~~ 284 (397)
T TIGR03087 217 -----PNPYP--PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAAL--PGVTV 284 (397)
T ss_pred -----cCCCC--CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhccC--CCeEE
Confidence 00011 2347899999999999999988 44555543 7899999999873 345555432 45887
Q ss_pred EeccChHHHHHHHHhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHH
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNS 540 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~ 540 (564)
.+..+ ++..+|+.||++|+||++ |++|++++|||+||+|||+|+.++ ..+..++++|++ ++ +|++
T Consensus 285 ~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~l----------v~-~~~~ 350 (397)
T TIGR03087 285 TGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA-EGIDALPGAELL----------VA-ADPA 350 (397)
T ss_pred eeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc-ccccccCCcceE----------eC-CCHH
Confidence 77665 356799999999999985 999999999999999999999754 233344567887 55 8899
Q ss_pred HHHhhccc
Q 008488 541 RVIPRIPL 548 (564)
Q Consensus 541 aLa~aI~~ 548 (564)
+++++|.+
T Consensus 351 ~la~ai~~ 358 (397)
T TIGR03087 351 DFAAAILA 358 (397)
T ss_pred HHHHHHHH
Confidence 99888753
No 67
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.93 E-value=1.6e-24 Score=231.98 Aligned_cols=190 Identities=17% Similarity=0.140 Sum_probs=154.2
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+.+..+..+|.++++|+..++.+.+ .++...+ ++.+++||++...+.+..
T Consensus 175 ~~~~~~~~~~d~ii~~S~~~~~~l~~--~~~~~~~------ki~vi~~gv~~~~~~~~~--------------------- 225 (407)
T cd04946 175 PLRRYLLSSLDAVFPCSEQGRNYLQK--RYPAYKE------KIKVSYLGVSDPGIISKP--------------------- 225 (407)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHH--HCCCccc------cEEEEECCcccccccCCC---------------------
Confidence 34455678999999999999999886 3444333 889999999887654321
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C--CeEEEEEeCCChhhHHHHHHHHHhCC--CceEE
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 461 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~--~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~ 461 (564)
..++.+.|+++||+.+.||++.+++|+.++.+ + ++.++++|+|+ ..+.++++..... .++.+
T Consensus 226 ----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f 293 (407)
T cd04946 226 ----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNF 293 (407)
T ss_pred ----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEE
Confidence 11245789999999999999999999999976 2 57788899987 4556666665433 46888
Q ss_pred EeccChHHHHHHHHh--cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCC-CC
Q 008488 462 VAKFNIPLAHMIIAG--ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSP-SY 538 (564)
Q Consensus 462 ~~~~~~~~~~~il~~--ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~-~d 538 (564)
.+..+.+++..+++. +|+++.||..|++|++++|||+||+|||+|+.||+.|++.++.+|++ +++ +|
T Consensus 294 ~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l----------~~~~~~ 363 (407)
T cd04946 294 TGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLL----------LSKDPT 363 (407)
T ss_pred ecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEE----------eCCCCC
Confidence 888888888888875 78999999999999999999999999999999999999999999998 454 58
Q ss_pred HHHHHhhccc
Q 008488 539 NSRVIPRIPL 548 (564)
Q Consensus 539 ~~aLa~aI~~ 548 (564)
+++++++|.+
T Consensus 364 ~~~la~~I~~ 373 (407)
T cd04946 364 PNELVSSLSK 373 (407)
T ss_pred HHHHHHHHHH
Confidence 8999988865
No 68
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.93 E-value=1.1e-24 Score=237.65 Aligned_cols=190 Identities=17% Similarity=0.070 Sum_probs=143.6
Q ss_pred HHHhcceeccCCHHHHHHHHcCcc-CCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGED-KGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~-~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (564)
....+|.++++|+..++.+.+... ++.. ..++.+||||++...+.|..
T Consensus 267 ~~~~~D~iI~~S~~~~~~l~~~~~~~~~~------~~ki~viP~g~~~~~~~~~~------------------------- 315 (500)
T TIGR02918 267 NADYIDFFITATDIQNQILKNQFKKYYNI------EPRIYTIPVGSLDELQYPEQ------------------------- 315 (500)
T ss_pred chhhCCEEEECCHHHHHHHHHHhhhhcCC------CCcEEEEcCCCcccccCccc-------------------------
Confidence 356789999999998888775221 1211 23789999998654433321
Q ss_pred HHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccCh
Q 008488 392 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 467 (564)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~ 467 (564)
.+....|+++||+.+.||++.+++|+.++.+ ++++|+|+|.|+ .++.++++..+++ +++.+.+..
T Consensus 316 -------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~--~~~~l~~~i~~~~l~~~V~f~G~~-- 384 (500)
T TIGR02918 316 -------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG--EKQKLQKIINENQAQDYIHLKGHR-- 384 (500)
T ss_pred -------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch--hHHHHHHHHHHcCCCCeEEEcCCC--
Confidence 1234689999999999999999999999875 799999999997 3566777766653 557766633
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCcceeEeeccccccccCCCCC-HHHHHhh
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDVIYSSPSY-NSRVIPR 545 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~l~~~~~~~~~~v~~~d-~~aLa~a 545 (564)
.+..+++.||++|+||.+|+||++++|||+||+|||+++.+ |.+|+|++|.+|+++...+.+ -++.| +++||++
T Consensus 385 -~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~---~d~~~~~~~la~~ 460 (500)
T TIGR02918 385 -NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEE---DDEDQIITALAEK 460 (500)
T ss_pred -CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccc---cchhHHHHHHHHH
Confidence 34568999999999999999999999999999999999986 899999999999994210000 01223 7888887
Q ss_pred ccc
Q 008488 546 IPL 548 (564)
Q Consensus 546 I~~ 548 (564)
|..
T Consensus 461 I~~ 463 (500)
T TIGR02918 461 IVE 463 (500)
T ss_pred HHH
Confidence 753
No 69
>PHA01630 putative group 1 glycosyl transferase
Probab=99.92 E-value=5.5e-24 Score=221.01 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=135.5
Q ss_pred HHHHHH-HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 308 NWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 308 ~~~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
.|+... ...+|.++++|+..++.+.+ .|++. +.++.+||||+|.+.|.|....
T Consensus 85 ~~~~~~~~~~ad~ii~~S~~~~~~l~~---~g~~~-----~~~i~vIpNGVd~~~f~~~~~~------------------ 138 (331)
T PHA01630 85 TALYFFRNQPVDEIVVPSQWSKNAFYT---SGLKI-----PQPIYVIPHNLNPRMFEYKPKE------------------ 138 (331)
T ss_pred HHHHHHhhccCCEEEECCHHHHHHHHH---cCCCC-----CCCEEEECCCCCHHHcCCCccc------------------
Confidence 455555 57899999999999999876 44331 2379999999999888764310
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEec
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~ 464 (564)
.....++++.|++.++||++.+++|++++.+ ++++++|+|++..+ ..+. ...+ ..+.
T Consensus 139 ------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~--~~l~----~~~~---~~~~ 197 (331)
T PHA01630 139 ------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLD--PRLF----GLNG---VKTP 197 (331)
T ss_pred ------------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccc--hhhc----cccc---eecc
Confidence 1133577788899999999999999999976 68999999976521 1111 1111 1234
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeec
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 526 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~ 526 (564)
.+.+++..+|+.||++++||++|+||++++||||||+|||+|+.||+.|++.++.||+++..
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~ 259 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKS 259 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeee
Confidence 56788889999999999999999999999999999999999999999999999999998653
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.91 E-value=7.8e-24 Score=229.58 Aligned_cols=258 Identities=17% Similarity=0.190 Sum_probs=180.2
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
.| +|+.||+|..++|.+++... ++.++++.+|. .||..+ |..+. .
T Consensus 132 ~d-~iwihDyhl~llp~~lr~~~------~~~~i~~f~Hi-----pfP~~e~~~~lp---------------------~- 177 (460)
T cd03788 132 GD-LVWVHDYHLLLLPQMLRERG------PDARIGFFLHI-----PFPSSEIFRCLP---------------------W- 177 (460)
T ss_pred CC-EEEEeChhhhHHHHHHHhhC------CCCeEEEEEeC-----CCCChHHHhhCC---------------------C-
Confidence 57 99999999999999988754 57899999993 333211 11111 0
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcch--------hhhhccceEEecCCcccCCCCCCCccccccccCcch
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD--------NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~--------~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~ 378 (564)
...+-.++..+|.|.+.+..+.+.+.+....-+.+. ..-+..++.+||||||++.|.+...
T Consensus 178 ~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~----------- 246 (460)
T cd03788 178 REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAA----------- 246 (460)
T ss_pred hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhc-----------
Confidence 112234566788888888777666554221100000 0001247899999999988875431
Q ss_pred hhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CC----eEEEEEeCC-----C--hhhH
Q 008488 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGTG-----K--KPME 445 (564)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~----v~lvIvG~g-----~--~~~~ 445 (564)
.+..++.+++..+... +.++|+++||+++.||++.+++|++.+.+ ++ +.|+++|.+ + .+++
T Consensus 247 ----~~~~~~~~~~~~~~~~--~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~ 320 (460)
T cd03788 247 ----SPEVQERAAELRERLG--GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELR 320 (460)
T ss_pred ----CchhHHHHHHHHHhcC--CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHH
Confidence 1222333333344432 45799999999999999999999998865 43 678888753 2 2456
Q ss_pred HHHHHHHHhCC--------CceEEEe-ccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCccccc
Q 008488 446 KQLEQLEILYP--------EKARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLV 512 (564)
Q Consensus 446 ~~l~~L~~~~~--------~~v~~~~-~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~ 512 (564)
++++++..+.+ ..++++. ..+.+++..+|+.||++|+||..|+||++++|||+||+| +|+|+.+|..
T Consensus 321 ~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 321 REVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred HHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccch
Confidence 66666644321 1254554 448888999999999999999999999999999999999 9999988888
Q ss_pred cccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 513 DTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 513 e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+. +.+|++ ++|.|++++|++|.+.
T Consensus 401 ~~---~~~g~l----------v~p~d~~~la~ai~~~ 424 (460)
T cd03788 401 EE---LSGALL----------VNPYDIDEVADAIHRA 424 (460)
T ss_pred hh---cCCCEE----------ECCCCHHHHHHHHHHH
Confidence 77 467888 7999999999988653
No 71
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.91 E-value=4.2e-23 Score=222.63 Aligned_cols=258 Identities=17% Similarity=0.195 Sum_probs=185.6
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|..||+|-.++|.+++... ++.++.|.+| -.||..+ |..+. .
T Consensus 128 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH-----ipfP~~e~f~~lp----------------------~ 173 (456)
T TIGR02400 128 GD-IVWVHDYHLMLLPAMLRELG------VQNKIGFFLH-----IPFPSSEIYRTLP----------------------W 173 (456)
T ss_pred CC-EEEEecchhhHHHHHHHhhC------CCCeEEEEEe-----CCCCChHHHhhCC----------------------c
Confidence 36 99999999999999999875 6889999999 3343221 12211 1
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcch-----hhhhccceEEecCCcccCCCCCCCccccccccCcchh
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD-----NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~-----~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~ 379 (564)
...+-.++..+|.|.+.+..+++.+.+... .|.+.. ..-+..++.++|||||++.|.+....
T Consensus 174 r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~----------- 242 (456)
T TIGR02400 174 RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKK----------- 242 (456)
T ss_pred HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcC-----------
Confidence 123456788999999999999988876332 122110 00133578999999999988764321
Q ss_pred hhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CC----eEEEEEeC-----CC--hhhHH
Q 008488 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGT-----GK--KPMEK 446 (564)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~----v~lvIvG~-----g~--~~~~~ 446 (564)
.......++++++++ +.++|+++||+++.||++.+++|++.+.+ ++ +.++++|. ++ ..+++
T Consensus 243 -~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~ 316 (456)
T TIGR02400 243 -PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRR 316 (456)
T ss_pred -hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHH
Confidence 000111224666653 44799999999999999999999999865 33 56777752 22 23556
Q ss_pred HHHHHHHhCCC--------ceEEEe-ccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCcccccc
Q 008488 447 QLEQLEILYPE--------KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVD 513 (564)
Q Consensus 447 ~l~~L~~~~~~--------~v~~~~-~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e 513 (564)
+++++..+.++ .+.++. .++.+++..+|+.||++++||..|+||++++|||+||+| +|+|+.+|..+
T Consensus 317 ~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~ 396 (456)
T TIGR02400 317 QVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ 396 (456)
T ss_pred HHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH
Confidence 66666432211 133333 447888899999999999999999999999999999999 99999988888
Q ss_pred ccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 514 TVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 514 ~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+. +|++ |+|.|++++|++|.+.
T Consensus 397 ~l~---~gll----------VnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 397 ELN---GALL----------VNPYDIDGMADAIARA 419 (456)
T ss_pred HhC---CcEE----------ECCCCHHHHHHHHHHH
Confidence 874 6888 8999999999988654
No 72
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.90 E-value=5.4e-23 Score=216.71 Aligned_cols=185 Identities=20% Similarity=0.163 Sum_probs=148.3
Q ss_pred HHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHH
Q 008488 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (564)
Q Consensus 312 ~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (564)
..+..+|.++++|+..++.+... ++. ..++.+||||++...+.+...
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~--~~~-------~~~v~~ip~g~~~~~~~~~~~------------------------ 199 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQ--FGN-------YNPIYTIPVGSIDPLKLPAQF------------------------ 199 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHH--hCC-------CCceEEEcccccChhhcccch------------------------
Confidence 34678999999999999988762 221 124889999999877655310
Q ss_pred HHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccCh
Q 008488 392 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 467 (564)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~ 467 (564)
.......++++||+.+.||++.+++|+.++.+ ++++|+|+|.|+. +..++.+...++ +++.+.+ + .
T Consensus 200 ------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g-~-~ 269 (372)
T cd04949 200 ------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE--EEKLKELIEELGLEDYVFLKG-Y-T 269 (372)
T ss_pred ------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch--HHHHHHHHHHcCCcceEEEcC-C-C
Confidence 01234689999999999999999999999975 7899999999873 344455544433 4566665 4 3
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
+++..+|+.||++|+||..|+||++++|||+||+|||+++.+ |..|++.++.+|++ +++.|+++|+++|
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~l----------v~~~d~~~la~~i 339 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYL----------VPKGDIEALAEAI 339 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceE----------eCCCcHHHHHHHH
Confidence 446679999999999999999999999999999999999987 89999999999999 7899999999987
Q ss_pred ccC
Q 008488 547 PLD 549 (564)
Q Consensus 547 ~~~ 549 (564)
...
T Consensus 340 ~~l 342 (372)
T cd04949 340 IEL 342 (372)
T ss_pred HHH
Confidence 543
No 73
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.90 E-value=6.5e-22 Score=207.87 Aligned_cols=308 Identities=16% Similarity=0.048 Sum_probs=198.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++++.. .||...+..+|+++|.++||+|.+++........ .....|+++
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~----------------------~~~~~g~~~ 53 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEAR----------------------LVPKAGIEF 53 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh----------------------ccccCCCcE
Confidence 899999854 5888888889999999999999999875311000 011147777
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.++.+..... . ..........+...+..+.+.+. .++|| |||+|.|..++.+.
T Consensus 54 ~~~~~~~~~~~-------~---------~~~~l~~~~~~~~~~~~~~~~ik---------~~~pD-vv~~~~~~~~~~~~ 107 (357)
T PRK00726 54 HFIPSGGLRRK-------G---------SLANLKAPFKLLKGVLQARKILK---------RFKPD-VVVGFGGYVSGPGG 107 (357)
T ss_pred EEEeccCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCcchhHHH
Confidence 77754322110 0 01111122223333333333332 23699 99999987776655
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
..++. .+.|+|++.|+... . ...+.....+|.+++++
T Consensus 108 ~~~~~-------~~~p~v~~~~~~~~---------------------------------~---~~~r~~~~~~d~ii~~~ 144 (357)
T PRK00726 108 LAARL-------LGIPLVIHEQNAVP---------------------------------G---LANKLLARFAKKVATAF 144 (357)
T ss_pred HHHHH-------cCCCEEEEcCCCCc---------------------------------c---HHHHHHHHHhchheECc
Confidence 55543 47899987663210 0 11233456899999998
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+....+ ++ ..++++++||+|.+.+.+.. .+.+++++. +.++
T Consensus 145 ~~~~~~--------~~------~~~i~vi~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~~ 185 (357)
T PRK00726 145 PGAFPE--------FF------KPKAVVTGNPVREEILALAA-----------------------PPARLAGRE--GKPT 185 (357)
T ss_pred hhhhhc--------cC------CCCEEEECCCCChHhhcccc-----------------------hhhhccCCC--CCeE
Confidence 744211 12 23899999999987654321 122445542 4478
Q ss_pred EEEEeccccccCHHHHH-HHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 405 IGFIGRLEEQKGSDILA-AAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll-~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
++++|+....|+...++ +|++++.+....++++|.|+ .++..+.+ . .+.++.+.+.. ++...+|+.||+++.+
T Consensus 186 i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~--~~~~~~~~-~-~~~~v~~~g~~--~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 186 LLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGD--LEEVRAAY-A-AGINAEVVPFI--DDMAAAYAAADLVICR 259 (357)
T ss_pred EEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCc--HHHHHHHh-h-cCCcEEEeehH--hhHHHHHHhCCEEEEC
Confidence 89999998888865555 99988854324577889887 34444444 3 44345544443 4566799999999987
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccc--------cccccccCcceeEeeccccccccCCCCC--HHHHHhhccc
Q 008488 484 SRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDVIYSSPSY--NSRVIPRIPL 548 (564)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~l~~~~~~~~~~v~~~d--~~aLa~aI~~ 548 (564)
|- +.+++|||++|+|+|++..++ ..+.+.+.++|++ +++.| +++|+++|.+
T Consensus 260 ~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~----------~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 260 AG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALL----------IPQSDLTPEKLAEKLLE 320 (357)
T ss_pred CC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEE----------EEcccCCHHHHHHHHHH
Confidence 62 689999999999999987643 2356777889998 56766 8999988864
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=2.4e-21 Score=202.48 Aligned_cols=308 Identities=15% Similarity=0.059 Sum_probs=194.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++.+.+ +||...++..|+++|.++||+|.+++........ .....|++++
T Consensus 1 ~~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~----------------------~~~~~~~~~~ 52 (350)
T cd03785 1 RILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEAR----------------------LVPKAGIPLH 52 (350)
T ss_pred CEEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh----------------------cccccCCceE
Confidence 46666643 6888889999999999999999999876321111 0011366676
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~ 245 (564)
.++.+.+..+ . ...+...+..+.+...++.+.+. +++|| |||+|.+..++....
T Consensus 53 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~i~---------~~~pD-vI~~~~~~~~~~~~~ 106 (350)
T cd03785 53 TIPVGGLRRK-------G---------SLKKLKAPFKLLKGVLQARKILK---------KFKPD-VVVGFGGYVSGPVGL 106 (350)
T ss_pred EEEecCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCCcchHHHH
Confidence 6654322110 0 01111111112222222222222 23699 889887665554444
Q ss_pred HHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCH
Q 008488 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (564)
Q Consensus 246 l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 325 (564)
.++. .++|++++.|+... ..+.+.....+|.|+++|+
T Consensus 107 ~a~~-------~~~p~v~~~~~~~~------------------------------------~~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 107 AAKL-------LGIPLVIHEQNAVP------------------------------------GLANRLLARFADRVALSFP 143 (350)
T ss_pred HHHH-------hCCCEEEEcCCCCc------------------------------------cHHHHHHHHhhCEEEEcch
Confidence 4443 37788875552110 0112333556999999999
Q ss_pred HHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEE
Q 008488 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (564)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (564)
...+.+ + ..++.+|+||+|...+.+.. . +++++++. +.+++
T Consensus 144 ~~~~~~--------~------~~~~~~i~n~v~~~~~~~~~----------------------~-~~~~~~~~--~~~~i 184 (350)
T cd03785 144 ETAKYF--------P------KDKAVVTGNPVREEILALDR----------------------E-RARLGLRP--GKPTL 184 (350)
T ss_pred hhhhcC--------C------CCcEEEECCCCchHHhhhhh----------------------h-HHhcCCCC--CCeEE
Confidence 877651 1 22889999999977654321 1 56677754 34678
Q ss_pred EEEeccccccCHH-HHHHHHHhcccCCeEE-EEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 406 GFIGRLEEQKGSD-ILAAAIPHFIKENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 406 ~~iGrl~~~KG~d-~ll~A~~~l~~~~v~l-vIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
++.|+....|+.+ .+++|++.+.++++++ +++|.|. . +.++++...+..++.+.+.. +.+..+|+.||+++.+
T Consensus 185 ~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--~-~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~ 259 (350)
T cd03785 185 LVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--L-EEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISR 259 (350)
T ss_pred EEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--H-HHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEEC
Confidence 8888777777765 4568888886566764 4678774 2 33444444334567766654 5666799999999987
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccc--------cccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 484 SRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
|- +++++|||++|+|+|+++.++ ..+.+.++++|++ +++. |+++|+++|.+
T Consensus 260 sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~----------v~~~~~~~~~l~~~i~~ 320 (350)
T cd03785 260 AG----ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVL----------IPQEELTPERLAAALLE 320 (350)
T ss_pred CC----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEE----------EecCCCCHHHHHHHHHH
Confidence 62 689999999999999987654 3466777789998 5665 88899888753
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.89 E-value=2e-21 Score=202.97 Aligned_cols=305 Identities=14% Similarity=0.083 Sum_probs=187.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||+|++.+ .||-......|+++|.++||+|++++.......+ . ....|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~--------------------~--~~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKR--------------------L--VPKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhc--------------------c--cccCCCce
Confidence 799988865 3554545568999999999999999864321101 0 01246677
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.++...+... .......+...+.....++.+.+. +++|| |||+|.+...+...
T Consensus 53 ~~i~~~~~~~~----------------~~~~~l~~~~~~~~~~~~l~~~i~---------~~~pD-vVi~~~~~~~~~~~ 106 (348)
T TIGR01133 53 YFIPVGGLRRK----------------GSFRLIKTPLKLLKAVFQARRILK---------KFKPD-AVIGFGGYVSGPAG 106 (348)
T ss_pred EEEeccCcCCC----------------ChHHHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEEcCCcccHHHH
Confidence 66643221110 011111121222223333333232 23699 89998766555554
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
.+++. .++|++++.|+... . ...+...+.+|.++++|
T Consensus 107 ~~~~~-------~~~p~v~~~~~~~~---------------------------------~---~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 107 LAAKL-------LGIPLFHHEQNAVP---------------------------------G---LTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHH-------cCCCEEEECCCCCc---------------------------------c---HHHHHHHHHhCeeEECc
Confidence 44443 36787754331100 0 11233456899999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccE
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (564)
+..++.+ +..+|+||+|...+.+... +++++++. +.++
T Consensus 144 ~~~~~~~-----------------~~~~i~n~v~~~~~~~~~~-----------------------~~~~~~~~--~~~~ 181 (348)
T TIGR01133 144 PGAKDHF-----------------EAVLVGNPVRQEIRSLPVP-----------------------RERFGLRE--GKPT 181 (348)
T ss_pred hhHhhcC-----------------CceEEcCCcCHHHhcccch-----------------------hhhcCCCC--CCeE
Confidence 9876554 2268999998765543211 23456653 4578
Q ss_pred EEEEeccccccCHHH-HHHHHHhcccCCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 405 IGFIGRLEEQKGSDI-LAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 405 i~~iGrl~~~KG~d~-ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
++++|+....|++.. +++|++.+.+.+++++++ |+++ . +.+++...+++ +.....|....++.+|+.||++|.
T Consensus 182 i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~-~~l~~~~~~~~--l~~~v~~~~~~~~~~l~~ad~~v~ 256 (348)
T TIGR01133 182 ILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND--L-EKVKNVYQELG--IEAIVTFIDENMAAAYAAADLVIS 256 (348)
T ss_pred EEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch--H-HHHHHHHhhCC--ceEEecCcccCHHHHHHhCCEEEE
Confidence 999998888888654 568888886556676544 4433 2 45555554443 212222222256789999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCccc-------cccccccCcceeEeeccccccccCCCCC--HHHHHhhcc
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVASTGG-------LVDTVEEGFTGFQMGSFSVDVIYSSPSY--NSRVIPRIP 547 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg-------~~e~v~~g~~G~l~~~~~~~~~~v~~~d--~~aLa~aI~ 547 (564)
+| + +++++|||++|+|+|+++.++ ..+++.++.+|++ +++.| +++|+++|.
T Consensus 257 ~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~----------~~~~~~~~~~l~~~i~ 316 (348)
T TIGR01133 257 RA---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLV----------IRQKELLPEKLLEALL 316 (348)
T ss_pred CC---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEE----------EecccCCHHHHHHHHH
Confidence 65 2 689999999999999998754 2357888899998 56765 899988875
No 76
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.86 E-value=6.7e-21 Score=217.60 Aligned_cols=260 Identities=17% Similarity=0.203 Sum_probs=181.7
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|-.||+|..++|.+++.+. +++++.|.+| -.||..+ |+.+..
T Consensus 148 ~d-~vWvhDYhL~llp~~lR~~~------~~~~igfFlH-----iPFPs~e~fr~lp~---------------------- 193 (797)
T PLN03063 148 GD-VVWCHDYHLMFLPQYLKEYN------NKMKVGWFLH-----TPFPSSEIYKTLPS---------------------- 193 (797)
T ss_pred CC-EEEEecchhhhHHHHHHHhC------CCCcEEEEec-----CCCCCHHHHhhCCC----------------------
Confidence 36 99999999999999999875 7899999999 3444221 122110
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcc--hhh---hhccceEEecCCcccCCCCCCCccccccccCcchh
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL--DNI---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~--~~~---~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~ 379 (564)
...+-.++..+|.|-+.+..+++.+.+.+. .|.+. ..+ -+..+|.++|||||++.|.+....
T Consensus 194 r~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~----------- 262 (797)
T PLN03063 194 RSELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL----------- 262 (797)
T ss_pred HHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC-----------
Confidence 123345677899999999988888775321 12110 000 112478999999999887654210
Q ss_pred hhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCe----EEEEEeC-----CC--hhhHH
Q 008488 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENV----QIIVLGT-----GK--KPMEK 446 (564)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v----~lvIvG~-----g~--~~~~~ 446 (564)
.........+++.++ +.++|+++||+++.||++.+++|++.+.+ +++ .|++++. ++ ..+++
T Consensus 263 -~~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~ 336 (797)
T PLN03063 263 -PEVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKS 336 (797)
T ss_pred -hhHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHH
Confidence 000011223454443 34799999999999999999999999865 443 4554432 22 24566
Q ss_pred HHHHHHHhCCCc--------eEEEe-ccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCcccccc
Q 008488 447 QLEQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVD 513 (564)
Q Consensus 447 ~l~~L~~~~~~~--------v~~~~-~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e 513 (564)
+++++....+++ ++++. .++.+++..+|+.||++|+||.+|++|++.+|||+||+| +|+|+.+|..+
T Consensus 337 ~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~ 416 (797)
T PLN03063 337 QVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ 416 (797)
T ss_pred HHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh
Confidence 677665332221 22222 347788889999999999999999999999999999999 99999999988
Q ss_pred ccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 514 TVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 514 ~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
.+ +.+|++ |+|.|++++|++|.+..
T Consensus 417 ~l--~~~all----------VnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 417 SL--GAGALL----------VNPWNITEVSSAIKEAL 441 (797)
T ss_pred hh--cCCeEE----------ECCCCHHHHHHHHHHHH
Confidence 76 447888 89999999999886544
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=6.9e-20 Score=177.18 Aligned_cols=117 Identities=28% Similarity=0.442 Sum_probs=96.9
Q ss_pred EEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHHHHHhcCEEEEc
Q 008488 407 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIAGADFILIP 483 (564)
Q Consensus 407 ~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~il~~ADv~v~P 483 (564)
|+|++.+.||++.+++++..+.+ ++++++++|.+++...............++.+.+.+ +.+....+++.||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 99999999999999999999976 599999999987422221111122233578888877 556666677779999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeE
Q 008488 484 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQ 523 (564)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l 523 (564)
|..|++|++++|||+||+|+|+|+.++..|++.++.+|++
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~ 228 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLL 228 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEE
Confidence 9999999999999999999999999999999999999986
No 78
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.84 E-value=3.9e-19 Score=188.47 Aligned_cols=184 Identities=14% Similarity=0.154 Sum_probs=129.1
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
.+++|.++++|+..++.+.+ +|++.+ ++.++.|.++.. |.+..+ +..++++
T Consensus 145 ~~~ad~i~~~s~~~~~~l~~---~gi~~~------ki~v~G~p~~~~-f~~~~~-------------------~~~~~~~ 195 (380)
T PRK13609 145 HREVDRYFVATDHVKKVLVD---IGVPPE------QVVETGIPIRSS-FELKIN-------------------PDIIYNK 195 (380)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCChh------HEEEECcccChH-HcCcCC-------------------HHHHHHH
Confidence 45799999999999999986 677654 676665555432 222111 3457888
Q ss_pred hCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHH
Q 008488 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~i 473 (564)
+|++.+ ...++++.|++...|+++.+++++.+. ++++++++|++....++.++++....++++.+.+..+ .+..+
T Consensus 196 ~~l~~~-~~~il~~~G~~~~~k~~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~--~~~~l 270 (380)
T PRK13609 196 YQLCPN-KKILLIMAGAHGVLGNVKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVE--NIDEL 270 (380)
T ss_pred cCCCCC-CcEEEEEcCCCCCCcCHHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechh--hHHHH
Confidence 999754 234566778999999999999998754 6899988765444466777777666665688776543 35679
Q ss_pred HHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-cccc----ccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGL----VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 474 l~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~----~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
|+.||+++. ++.|++++|||+||+|+|+++ .+|. .+.+.+ +|+. +...|+++++++|.
T Consensus 271 ~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~----------~~~~~~~~l~~~i~ 333 (380)
T PRK13609 271 FRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAA----------VVIRDDEEVFAKTE 333 (380)
T ss_pred HHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcE----------EEECCHHHHHHHHH
Confidence 999999884 567999999999999999986 4552 123333 3443 23467777777664
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.84 E-value=1e-18 Score=185.60 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=135.1
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
.+.+|.++++|+..++.+.+ +|++.+ ++.++.++++.+.+.+... +++++++
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~---~g~~~~------ki~v~g~~v~~~f~~~~~~-------------------~~~~r~~ 199 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALK---RGLEPS------QIRVYGLPIRPSFARAVRP-------------------KDELRRE 199 (382)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECcccCHhhccCCCC-------------------HHHHHHH
Confidence 35799999999999999986 677755 8888888888655443222 5678999
Q ss_pred hCCCCCCCccEEEEEeccccccCHHHHHHHHHhcc------cCCeE-EEEEeCCChhhHHHHHHHHHhCCCceEEEeccC
Q 008488 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI------KENVQ-IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~------~~~v~-lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~ 466 (564)
+|++.+ .++++++|+....|++..+++++..+. .++++ ++|+|.++ .+++.++++.. ..++.+.+..+
T Consensus 200 ~gl~~~--~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-~~~~~L~~~~~--~~~v~~~G~~~ 274 (382)
T PLN02605 200 LGMDED--LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-KLQSKLESRDW--KIPVKVRGFVT 274 (382)
T ss_pred cCCCCC--CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-HHHHHHHhhcc--cCCeEEEeccc
Confidence 999754 489999999999999999999998753 35666 56667653 34556655422 23466555543
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc------cccccccccCcceeEeeccccccccCCCCCHH
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST------GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNS 540 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~------gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~ 540 (564)
+++++|++||++|.++ .|++++|||+||+|+|+++. |+. +.+.++++|+. +.|++
T Consensus 275 --~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~------------~~~~~ 335 (382)
T PLN02605 275 --NMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAF------------SESPK 335 (382)
T ss_pred --cHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceee------------cCCHH
Confidence 5778999999999854 58899999999999999984 444 44445566764 26788
Q ss_pred HHHhhcc
Q 008488 541 RVIPRIP 547 (564)
Q Consensus 541 aLa~aI~ 547 (564)
+++++|.
T Consensus 336 ~la~~i~ 342 (382)
T PLN02605 336 EIARIVA 342 (382)
T ss_pred HHHHHHH
Confidence 8887764
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.83 E-value=7.9e-20 Score=171.40 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcc---cCCeEEEEEeCCChhhHHHHHHHHHhCC--CceEE
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI---KENVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 461 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~---~~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~ 461 (564)
++..+...+.+. +.++|+|+||+.+.||++.+++|+..+. .+++.++|+|.++ ....+..+...+. .++.+
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~i~~ 77 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--YKKELKNLIEKLNLKENIIF 77 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--HHHHHHHHHHHTTCGTTEEE
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--cccccccccccccccccccc
Confidence 556677777654 4589999999999999999999999996 3799999999776 4455555555543 57888
Q ss_pred EeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHH
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSR 541 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~a 541 (564)
++..+.+++..+++.||++++||.+|++|++++|||+||+|||+++.|+..|++.++.+|++ +++.|+++
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~----------~~~~~~~~ 147 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFL----------FDPNDIEE 147 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEE----------ESTTSHHH
T ss_pred cccccccccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEE----------eCCCCHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999 68889999
Q ss_pred HHhhccc
Q 008488 542 VIPRIPL 548 (564)
Q Consensus 542 La~aI~~ 548 (564)
++++|..
T Consensus 148 l~~~i~~ 154 (172)
T PF00534_consen 148 LADAIEK 154 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.82 E-value=8.1e-20 Score=208.66 Aligned_cols=258 Identities=17% Similarity=0.228 Sum_probs=179.8
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|..||+|..++|.+++.+. ++.++-|.+|- .||..+ +..+ | .
T Consensus 134 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH~-----pfP~~~~f~~l--p--------------------~ 179 (726)
T PRK14501 134 GD-VVWVHDYQLMLLPAMLRERL------PDARIGFFLHI-----PFPSFEVFRLL--P--------------------W 179 (726)
T ss_pred CC-EEEEeCchhhhHHHHHHhhC------CCCcEEEEeeC-----CCCChHHHhhC--C--------------------C
Confidence 36 99999999999999998765 68899999993 343222 1221 1 1
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccC--CCcch-----hhhhccceEEecCCcccCCCCCCCccccccccCcchh
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDK--GVELD-----NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~--g~~~~-----~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~ 379 (564)
...+-.++..+|.|-+-+..+.+.+.+.... +.+.. ..=+..++.++|||||++.|.+....
T Consensus 180 ~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~----------- 248 (726)
T PRK14501 180 REEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD----------- 248 (726)
T ss_pred hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC-----------
Confidence 1233456778999988888888776653211 21100 00012368999999999988764310
Q ss_pred hhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C----CeEEEEEeCC-----C--hhhHH
Q 008488 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTG-----K--KPMEK 446 (564)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~----~v~lvIvG~g-----~--~~~~~ 446 (564)
.......+.+++.++ +.++|+++||+++.||++.+++|++.+.+ + +++|+++|.+ + .++++
T Consensus 249 -~~~~~~~~~lr~~~~-----~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~ 322 (726)
T PRK14501 249 -PEVQEEIRRLRQDLR-----GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKR 322 (726)
T ss_pred -chHHHHHHHHHHHcC-----CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHH
Confidence 000111233455432 44799999999999999999999999865 4 3788888733 1 24566
Q ss_pred HHHHHHHhCCC--------ceE-EEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHc-----CCcEEEcCccccc
Q 008488 447 QLEQLEILYPE--------KAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY-----GTVPIVASTGGLV 512 (564)
Q Consensus 447 ~l~~L~~~~~~--------~v~-~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~-----G~PvI~s~~gg~~ 512 (564)
+++++..+.++ .++ +.+.++.+++..+|+.||++++||..|++|++++|||+| |+||++...|+..
T Consensus 323 ~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~ 402 (726)
T PRK14501 323 EIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA 402 (726)
T ss_pred HHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH
Confidence 66666543221 133 344568889999999999999999999999999999999 5577777788888
Q ss_pred cccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 513 DTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 513 e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
+++ +|++ |+|.|++++|++|.+..
T Consensus 403 ~l~----~~ll----------v~P~d~~~la~ai~~~l 426 (726)
T PRK14501 403 ELA----EALL----------VNPNDIEGIAAAIKRAL 426 (726)
T ss_pred HhC----cCeE----------ECCCCHHHHHHHHHHHH
Confidence 875 3787 89999999999886643
No 82
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.81 E-value=1.3e-18 Score=187.32 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=137.3
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+++..++.+|.|+++|+..++.+.+ .|++ +. +.+++|+ +.+.+.+.. .....
T Consensus 170 ~~~r~~~~~~d~ii~~S~~~~~~l~~---~g~~------~~-i~vi~n~-~~d~~~~~~----------------~~~~~ 222 (425)
T PRK05749 170 RFYRLLFKNIDLVLAQSEEDAERFLA---LGAK------NE-VTVTGNL-KFDIEVPPE----------------LAARA 222 (425)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH---cCCC------CC-cEecccc-cccCCCChh----------------hHHHH
Confidence 45667788999999999999999986 5654 22 6778874 333222211 11224
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCc-eE----
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEK-AR---- 460 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~-v~---- 460 (564)
..++++++ + +.++++++|+. .|+.+.+++|++++.+ ++++++|+|.|+.. .+.++++..+.+-. +.
T Consensus 223 ~~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~ 295 (425)
T PRK05749 223 ATLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQG 295 (425)
T ss_pred HHHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCC
Confidence 56777776 3 34688888864 6889999999999865 79999999998732 24455555543311 11
Q ss_pred ---------EEeccChHHHHHHHHhcCEEEE-cCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccC-cceeEeeccc
Q 008488 461 ---------GVAKFNIPLAHMIIAGADFILI-PSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEG-FTGFQMGSFS 528 (564)
Q Consensus 461 ---------~~~~~~~~~~~~il~~ADv~v~-PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g-~~G~l~~~~~ 528 (564)
.++. ...++..+|+.||++++ +|..|++|.+++|||+||+|||++.. ++..|+++.. .+|++
T Consensus 296 ~~~~~~~~v~l~~-~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~----- 369 (425)
T PRK05749 296 EPPSADTDVLLGD-TMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAA----- 369 (425)
T ss_pred CCCCCCCcEEEEe-cHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCe-----
Confidence 1111 23467789999999665 67779999999999999999999864 6666766542 45776
Q ss_pred cccccCCCCCHHHHHhhccc
Q 008488 529 VDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 529 ~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++.|+++|+++|..
T Consensus 370 -----~~~~d~~~La~~l~~ 384 (425)
T PRK05749 370 -----IQVEDAEDLAKAVTY 384 (425)
T ss_pred -----EEECCHHHHHHHHHH
Confidence 578899999988753
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.80 E-value=1.7e-18 Score=186.39 Aligned_cols=259 Identities=15% Similarity=0.160 Sum_probs=191.2
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|-.||+|..++|.+++... ++.++-|.+| -.||..+ |..+. .
T Consensus 133 ~d-~vWVhDYhL~llp~~LR~~~------~~~~IgfFlH-----iPFPs~eifr~LP----------------------~ 178 (487)
T TIGR02398 133 GA-TVWVHDYNLWLVPGYIRQLR------PDLKIAFFHH-----TPFPSADVFNILP----------------------W 178 (487)
T ss_pred CC-EEEEecchhhHHHHHHHHhC------CCCeEEEEee-----CCCCChHHHhhCC----------------------c
Confidence 36 99999999999999999865 6889999999 3444221 12221 1
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcchh-------h-------------------hhccceEEecCCcc
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN-------I-------------------IRKTGIKGIVNGMD 358 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~-------~-------------------~~~~~i~~I~NGid 358 (564)
...+-.++..+|.|-+-+..+++.+.+... .|.+-.. . =+...+.++|.|||
T Consensus 179 r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID 258 (487)
T TIGR02398 179 REQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTD 258 (487)
T ss_pred hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEec
Confidence 123345678999999999999988776332 1221100 0 01235899999999
Q ss_pred cCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C----Ce
Q 008488 359 VQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NV 432 (564)
Q Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~----~v 432 (564)
++.|.+.... ..-....+.++++++ +.++|++++|+++.||++..++|++++.+ | ++
T Consensus 259 ~~~f~~~~~~------------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv 321 (487)
T TIGR02398 259 PERIRSALAA------------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKV 321 (487)
T ss_pred HHHHHHHhcC------------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccCce
Confidence 9988654310 011223456788877 34799999999999999999999999865 4 57
Q ss_pred EEEEEeCCC-------hhhHHHHHHHHHhCCC---------ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHH
Q 008488 433 QIIVLGTGK-------KPMEKQLEQLEILYPE---------KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA 496 (564)
Q Consensus 433 ~lvIvG~g~-------~~~~~~l~~L~~~~~~---------~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEA 496 (564)
.|+++|.+. .+++++++++..+.++ .+.+...++.+++..+|+.||++++||..||++++..|+
T Consensus 322 ~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Ey 401 (487)
T TIGR02398 322 TLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEY 401 (487)
T ss_pred EEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhH
Confidence 899998763 2467777777665421 234455558888889999999999999999999999999
Q ss_pred HHcCC----cEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 497 MRYGT----VPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 497 ma~G~----PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
|+|+. |+|.|..+|..+.+. .+++ |+|.|++++|++|..+.
T Consensus 402 va~~~~~~GvLILSefaGaa~~l~---~All----------VNP~d~~~~A~ai~~AL 446 (487)
T TIGR02398 402 VAAQGLLDGVLVLSEFAGAAVELK---GALL----------TNPYDPVRMDETIYVAL 446 (487)
T ss_pred HhhhcCCCCCEEEeccccchhhcC---CCEE----------ECCCCHHHHHHHHHHHH
Confidence 99998 999999999887764 3666 89999999999887655
No 84
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.80 E-value=1.4e-17 Score=176.37 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=138.9
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHH
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (564)
.+++..++.+|.|+++|+.+++.+.. ++ .++.+|+||+|.+.|.+.....
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~---~~---------~~i~~i~ngvd~~~f~~~~~~~------------------ 194 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR---LN---------PNVVLVPNGVDYEHFAAARDPP------------------ 194 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh---CC---------CCEEEcccccCHHHhhcccccC------------------
Confidence 56788899999999999999988775 33 2789999999999887653210
Q ss_pred HHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccCh
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~ 467 (564)
...+... ..+.++++|+|++.+.++++.+.++++.. ++++|+|+|.++... ....+.. ..++.+.+..+.
T Consensus 195 ~~~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~~~--~~~~~~~--~~nV~~~G~~~~ 264 (373)
T cd04950 195 PPPADLA----ALPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDVSI--DPSALLR--LPNVHYLGPKPY 264 (373)
T ss_pred CChhHHh----cCCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcCcc--ChhHhcc--CCCEEEeCCCCH
Confidence 0001111 12457999999999988888777666543 789999999983211 1122211 256999998899
Q ss_pred HHHHHHHHhcCEEEEcCCC-----CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHH
Q 008488 468 PLAHMIIAGADFILIPSRF-----EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRV 542 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~-----E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aL 542 (564)
++++.+++++|++++|+.. +.+|++++|||+||+|||+|+.+. ++..+..+++ .++|++++
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~---~~~~~~~~~~-----------~~~d~~~~ 330 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE---VRRYEDEVVL-----------IADDPEEF 330 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH---HHhhcCcEEE-----------eCCCHHHH
Confidence 9999999999999999864 368999999999999999998654 4444444443 45689999
Q ss_pred HhhcccC
Q 008488 543 IPRIPLD 549 (564)
Q Consensus 543 a~aI~~~ 549 (564)
+++|.+.
T Consensus 331 ~~ai~~~ 337 (373)
T cd04950 331 VAAIEKA 337 (373)
T ss_pred HHHHHHH
Confidence 8888664
No 85
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=1.5e-16 Score=169.47 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=123.2
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHh
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (564)
..+|.+++.|+..++.+.+ .|++.+ ++.++.|+++... .+..+ +.++++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~---~gi~~~------ki~v~GiPv~~~f-~~~~~-------------------~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFID---VGIDPS------TVKVTGIPIDNKF-ETPID-------------------QKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECeecChHh-ccccc-------------------HHHHHHHc
Confidence 4699999999999999986 677655 7777766666432 22111 45677889
Q ss_pred CCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH
Q 008488 395 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (564)
Q Consensus 395 gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il 474 (564)
|++.+ ...++++.|++...||++.+++++.+. .+++++++++++.+.+.+.+++.... ..++.+.+. . +.++.+|
T Consensus 197 ~l~~~-~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~-~-~~~~~~~ 271 (391)
T PRK13608 197 NLDPD-KQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLTAKFKS-NENVLILGY-T-KHMNEWM 271 (391)
T ss_pred CCCCC-CCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEec-c-chHHHHH
Confidence 99754 334567899999999999999986432 26788877754443344444433222 235665554 3 3567899
Q ss_pred HhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 475 ~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~-gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+.||++|. ++.|++++|||++|+|+|+++. +| ..+++.+.+.|+. +.|+++++++|.
T Consensus 272 ~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~------------~~~~~~l~~~i~ 333 (391)
T PRK13608 272 ASSQLMIT----KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI------------ADTPEEAIKIVA 333 (391)
T ss_pred HhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE------------eCCHHHHHHHHH
Confidence 99999996 4679999999999999999964 33 2223345455554 346666665543
No 86
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=4.1e-17 Score=172.59 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=142.4
Q ss_pred HHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
....+|.+++.|...+..+.... ..+ ....+.+.+-.+|.+.+.+.- | +.+.+.++-.+.
T Consensus 206 ~~~~~~~~~~ns~~~~~~f~~~~-~~L------~~~d~~~~y~ei~~s~~~~~~-------~------~~~~~~~~~~r~ 265 (495)
T KOG0853|consen 206 TTGLAWKILVNSYFTKRQFKATF-VSL------SNSDITSTYPEIDGSWFTYGQ-------Y------ESHLELRLPVRL 265 (495)
T ss_pred hhhccceEecchhhhhhhhhhhh-hhc------CCCCcceeeccccchhccccc-------c------ccchhcccccce
Confidence 34578888888888887776521 111 123578888888887666421 1 111122223333
Q ss_pred HhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc-------CCeEEEEEeCC--C------hhhHHHHHHHHHhCC-
Q 008488 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLGTG--K------KPMEKQLEQLEILYP- 456 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~-------~~v~lvIvG~g--~------~~~~~~l~~L~~~~~- 456 (564)
+.+... ....+..+-|+++.||++++++++.++.. .+.+++++|+. + ..+.+.+.++.+++.
T Consensus 266 ~~~v~~--~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l 343 (495)
T KOG0853|consen 266 YRGVSG--IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL 343 (495)
T ss_pred eeeecc--cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc
Confidence 444432 23578889999999999999999998865 35788898832 1 246667777777774
Q ss_pred -CceEEE-eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccC
Q 008488 457 -EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYS 534 (564)
Q Consensus 457 -~~v~~~-~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v 534 (564)
++++.+ ...+......+++.+.+.+.....|+||++.+|||+||+|||+++.||..|+|.++.|||+ +
T Consensus 344 ~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l----------~ 413 (495)
T KOG0853|consen 344 LGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLL----------I 413 (495)
T ss_pred cCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCccee----------e
Confidence 244444 5556666666777777777766669999999999999999999999999999999999999 6
Q ss_pred CCCCHH---HHHhhcc
Q 008488 535 SPSYNS---RVIPRIP 547 (564)
Q Consensus 535 ~~~d~~---aLa~aI~ 547 (564)
+| +.+ .+|+++.
T Consensus 414 dp-~~e~~~~~a~~~~ 428 (495)
T KOG0853|consen 414 DP-GQEAVAELADALL 428 (495)
T ss_pred CC-chHHHHHHHHHHH
Confidence 77 555 4777653
No 87
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.73 E-value=8.9e-16 Score=160.08 Aligned_cols=172 Identities=15% Similarity=0.046 Sum_probs=123.7
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+++..++.+|.++++|+.+++.+.+ +|++.+ ++.+++|..+.....+..
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~---~g~~~~------~i~~~~~~~~~~~~~~~~-------------------- 164 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVE---EGLTTD------KIIVQGIFDYLNDIELVK-------------------- 164 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCcC------ceEecccccccccccccc--------------------
Confidence 466788899999999999999999986 565433 566555544321111100
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccC
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~ 466 (564)
.....+.++|+|++...+++. . ..++++|+|+|.|+... ....++.+.+.++
T Consensus 165 -----------~~~~~~~i~yaG~l~k~~~l~-------~-~~~~~~l~i~G~g~~~~---------~~~~~V~f~G~~~ 216 (333)
T PRK09814 165 -----------TPSFQKKINFAGNLEKSPFLK-------N-WSQGIKLTVFGPNPEDL---------ENSANISYKGWFD 216 (333)
T ss_pred -----------cccCCceEEEecChhhchHHH-------h-cCCCCeEEEECCCcccc---------ccCCCeEEecCCC
Confidence 011346899999999543221 1 23679999999997321 2335799999999
Q ss_pred hHHHHHHHHhcCEEEEcCCC-----------CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCC
Q 008488 467 IPLAHMIIAGADFILIPSRF-----------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSS 535 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~-----------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~ 535 (564)
.+++..+|+. |+.+++... -.+|.++.|+|+||+|||+++.+++.|+|+++.+|++ ++
T Consensus 217 ~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~----------v~ 285 (333)
T PRK09814 217 PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFV----------VD 285 (333)
T ss_pred HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEE----------eC
Confidence 9999888888 766665321 2578899999999999999999999999999999998 44
Q ss_pred CCCHHHHHhhccc
Q 008488 536 PSYNSRVIPRIPL 548 (564)
Q Consensus 536 ~~d~~aLa~aI~~ 548 (564)
+.++++++|..
T Consensus 286 --~~~el~~~l~~ 296 (333)
T PRK09814 286 --SLEELPEIIDN 296 (333)
T ss_pred --CHHHHHHHHHh
Confidence 45667666654
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.72 E-value=8e-16 Score=161.70 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=129.0
Q ss_pred HHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (564)
..+.+|.++++|+..++.+.+ .|++.+ ++.+++|++ |...+.+... .....+
T Consensus 138 ~~~~ad~~~~~s~~~~~~l~~---~G~~~~------kI~vign~v~d~~~~~~~~~------------------~~~~~~ 190 (363)
T cd03786 138 IDKLSDLHFAPTEEARRNLLQ---EGEPPE------RIFVVGNTMIDALLRLLELA------------------KKELIL 190 (363)
T ss_pred HHHHhhhccCCCHHHHHHHHH---cCCCcc------cEEEECchHHHHHHHHHHhh------------------ccchhh
Confidence 345789999999999999886 677655 899999986 5332221110 011224
Q ss_pred HHhCCCCCCCccEEEEEecccc---ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhC---CCceEEEecc
Q 008488 392 AEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY---PEKARGVAKF 465 (564)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~---~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~---~~~v~~~~~~ 465 (564)
++++++. +..++++.||... .||++.+++|++++.+.++.+++.|.++ .++.+++...++ .+++.+.+..
T Consensus 191 ~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 191 ELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred hhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCc
Confidence 5677753 3357788999874 7999999999998854456666666655 334444444333 3467766655
Q ss_pred ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCcceeEeeccccccccCCCCCHHHHHh
Q 008488 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIP 544 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~ 544 (564)
...++..+|+.||++|.+|- | ++.|||++|+|+|+++. +..+|+++.|. ++. + ..|++++++
T Consensus 267 ~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g~-~~~----------~-~~~~~~i~~ 329 (363)
T cd03786 267 GYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVESGT-NVL----------V-GTDPEAILA 329 (363)
T ss_pred CHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhheee-EEe----------c-CCCHHHHHH
Confidence 66778889999999999984 4 57999999999999975 44667776543 332 2 236778877
Q ss_pred hccc
Q 008488 545 RIPL 548 (564)
Q Consensus 545 aI~~ 548 (564)
+|..
T Consensus 330 ~i~~ 333 (363)
T cd03786 330 AIEK 333 (363)
T ss_pred HHHH
Confidence 6643
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=9.1e-16 Score=162.52 Aligned_cols=181 Identities=17% Similarity=0.097 Sum_probs=119.8
Q ss_pred HHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
..+.+|.++++|+..++.+.+ +|+ ++.++.|.+.... .+.. .+..+++
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~---~g~---------~~~~~G~p~~~~~-~~~~-------------------~~~~~~~ 178 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDK---LGV---------PVTFVGHPLADAI-PLLP-------------------DRAAARA 178 (380)
T ss_pred HHHHHhhheeCCccCHHHHHh---cCC---------CeEEECcCHHHhc-cccc-------------------ChHHHHH
Confidence 467899999999998888765 332 3444444443211 1101 1456788
Q ss_pred HhCCCCCCCccE-EEEEe-ccccc-cCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhC-CCceEEEeccC
Q 008488 393 EVGLPVDRNIPV-IGFIG-RLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFN 466 (564)
Q Consensus 393 ~~gl~~~~~~~~-i~~iG-rl~~~-KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~-~~~v~~~~~~~ 466 (564)
++|++.+. ++ +++.| |..+. ++++.+++|++.+.+ ++++++++|.++ ..++.++++..++ +.++... .
T Consensus 179 ~l~~~~~~--~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~v~~~---~ 252 (380)
T PRK00025 179 RLGLDPDA--RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-KRREQIEEALAEYAGLEVTLL---D 252 (380)
T ss_pred HcCCCCCC--CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-hhHHHHHHHHhhcCCCCeEEE---c
Confidence 89986542 54 45555 44444 457899999998865 589999987633 2445555555444 3233332 2
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-----------------CccccccccccCc--ceeEeecc
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-----------------STGGLVDTVEEGF--TGFQMGSF 527 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-----------------~~gg~~e~v~~g~--~G~l~~~~ 527 (564)
+++..+|+.||++|.+| |.+.+|||++|+|+|++ +.+++++++.++. .+++
T Consensus 253 -~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 322 (380)
T PRK00025 253 -GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELL---- 322 (380)
T ss_pred -ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhc----
Confidence 35677999999999987 88999999999999987 5567778877653 4454
Q ss_pred ccccccCCCCCHHHHHhhcc
Q 008488 528 SVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 528 ~~~~~~v~~~d~~aLa~aI~ 547 (564)
.+..|++.+++++.
T Consensus 323 ------~~~~~~~~l~~~i~ 336 (380)
T PRK00025 323 ------QEEATPEKLARALL 336 (380)
T ss_pred ------CCCCCHHHHHHHHH
Confidence 45667788877654
No 90
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.69 E-value=2e-15 Score=159.32 Aligned_cols=237 Identities=18% Similarity=0.112 Sum_probs=155.5
Q ss_pred CCCEEEEEc-CCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 227 GEDVVFVAN-DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 227 ~pDvIih~h-~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
+|| +||+| |+..++.....+.. .++|++.+-++....+.+ .+.
T Consensus 86 ~pD-iv~~~gd~~~~la~a~aa~~-------~~ipv~h~~~g~~s~~~~-------------------------~~~--- 129 (365)
T TIGR00236 86 KPD-IVLVQGDTTTTLAGALAAFY-------LQIPVGHVEAGLRTGDRY-------------------------SPM--- 129 (365)
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------hCCCEEEEeCCCCcCCCC-------------------------CCC---
Confidence 599 89999 46666666666554 488987543321100000 000
Q ss_pred hhHHHHHHH-HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhcc
Q 008488 306 KINWMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAK 383 (564)
Q Consensus 306 ~~~~~k~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (564)
...+.+..+ ..+|.++++|+..++.+.+ .|++.+ +|.+++|++ |...+.+..
T Consensus 130 ~~~~~r~~~~~~ad~~~~~s~~~~~~l~~---~G~~~~------~I~vign~~~d~~~~~~~~----------------- 183 (365)
T TIGR00236 130 PEEINRQLTGHIADLHFAPTEQAKDNLLR---ENVKAD------SIFVTGNTVIDALLTNVEI----------------- 183 (365)
T ss_pred ccHHHHHHHHHHHHhccCCCHHHHHHHHH---cCCCcc------cEEEeCChHHHHHHHHHhh-----------------
Confidence 001122233 3589999999999999987 577755 899999996 432221110
Q ss_pred HHHHHHHHHHhCCCCCCCccEEEEEe-cc-ccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCce
Q 008488 384 PLLKEALQAEVGLPVDRNIPVIGFIG-RL-EEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKA 459 (564)
Q Consensus 384 ~~~~~~l~~~~gl~~~~~~~~i~~iG-rl-~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v 459 (564)
.....++++++. + .+++++.+ |. ...||++.+++|+.++.+ ++++++++|.++...++.+.+.. ....++
T Consensus 184 -~~~~~~~~~~~~--~--~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v 257 (365)
T TIGR00236 184 -AYSSPVLSEFGE--D--KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRV 257 (365)
T ss_pred -ccchhHHHhcCC--C--CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCE
Confidence 012345566663 1 24555544 54 346999999999999864 58899988765433343333322 223468
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCcceeEeeccccccccCCCCC
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d 538 (564)
.+.+.........+++.||+++.+| |..++|||+||+|+|++ +.|+..|++.++ +|++ + +.|
T Consensus 258 ~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~l----------v-~~d 320 (365)
T TIGR00236 258 HLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKL----------V-GTD 320 (365)
T ss_pred EEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEE----------e-CCC
Confidence 8888777777778999999999887 66789999999999996 678899998865 5554 3 467
Q ss_pred HHHHHhhccc
Q 008488 539 NSRVIPRIPL 548 (564)
Q Consensus 539 ~~aLa~aI~~ 548 (564)
+++++++|.+
T Consensus 321 ~~~i~~ai~~ 330 (365)
T TIGR00236 321 KENITKAAKR 330 (365)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 91
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.67 E-value=1.2e-15 Score=174.16 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=179.5
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCcccccc-ccccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFE-DFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|..||+|..++|.+++... +++++-|.+| -.||.. .|+.+..
T Consensus 232 gD-~VWVHDYHL~LlP~~LR~~~------p~~~IGfFlH-----iPFPs~Eifr~LP~---------------------- 277 (934)
T PLN03064 232 GD-VVWCHDYHLMFLPKCLKEYN------SNMKVGWFLH-----TPFPSSEIHRTLPS---------------------- 277 (934)
T ss_pred CC-EEEEecchhhHHHHHHHHhC------CCCcEEEEec-----CCCCChHHHhhCCc----------------------
Confidence 36 99999999999999999875 7899999999 344422 1122210
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcc--hhhh---hccceEEecCCcccCCCCCCCccccccccCcchh
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL--DNII---RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~--~~~~---~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~ 379 (564)
..-+-.++..+|.|-+.+..++..|.+.+. .|.+. ..+. +...+.++|-|||++.|......
T Consensus 278 r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~----------- 346 (934)
T PLN03064 278 RSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET----------- 346 (934)
T ss_pred HHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC-----------
Confidence 122345678999999999999988876332 12211 0000 11257788999998887643210
Q ss_pred hhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeE--EEEE-------eCCC--hhhHH
Q 008488 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQ--IIVL-------GTGK--KPMEK 446 (564)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~--lvIv-------G~g~--~~~~~ 446 (564)
..-....++++++++ +..+|+.++|+++.||+...++|++.+.+ |+++ ++++ ++++ .+++.
T Consensus 347 -~~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~ 420 (934)
T PLN03064 347 -PQVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTS 420 (934)
T ss_pred -hhHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHH
Confidence 001122346777765 34699999999999999999999998765 4433 4444 3333 23555
Q ss_pred HHHHHHHhCCCc--------eEEE-eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCC----cEEEcCcccccc
Q 008488 447 QLEQLEILYPEK--------ARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT----VPIVASTGGLVD 513 (564)
Q Consensus 447 ~l~~L~~~~~~~--------v~~~-~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~----PvI~s~~gg~~e 513 (564)
++.++..+.+.+ |.++ ..++.+++..+|+.||++++||..|+++++.+|||+|+. ++|.|...|..+
T Consensus 421 ~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~ 500 (934)
T PLN03064 421 QVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQ 500 (934)
T ss_pred HHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHH
Confidence 566655543311 2222 225788888899999999999999999999999999954 455588888777
Q ss_pred ccccCcceeEeeccccccccCCCCCHHHHHhhcccCCc
Q 008488 514 TVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDST 551 (564)
Q Consensus 514 ~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~~ 551 (564)
.+ +..+++ |+|.|++++|++|.++..
T Consensus 501 ~L--~~~All----------VNP~D~~~vA~AI~~AL~ 526 (934)
T PLN03064 501 SL--GAGAIL----------VNPWNITEVAASIAQALN 526 (934)
T ss_pred Hh--CCceEE----------ECCCCHHHHHHHHHHHHh
Confidence 77 335777 899999999998876553
No 92
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.65 E-value=9.9e-16 Score=164.18 Aligned_cols=375 Identities=21% Similarity=0.290 Sum_probs=194.9
Q ss_pred EEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeCCCccccccCcceEEEEEeC------------CeeeeEEEEE
Q 008488 90 VGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPRYDQYKDAWDTDVVIELKVG------------DKIEKVRFFH 156 (564)
Q Consensus 90 vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 156 (564)
+++|+.- |.||+-+|+..=|+.+.+ .|-+..+|.|...+... +. ...+... ..--.+++.+
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~---~e-~e~~e~~~~~l~~~~~~~~~~Gl~v~~GR 75 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNAR---TE-VEEIEPDNPLLKDALESMREEGLKVRYGR 75 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHH---HH-EEE--SSSGGHHHHHHHHHHTT-EEEEEE
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccC---CC-CCcCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4555543 799999999998888865 58899999997543210 00 0000000 0012356666
Q ss_pred eeecCeeEEEE-eCCcc-------cccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCC
Q 008488 157 CHKRGVDRVFV-DHPWF-------LAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGE 228 (564)
Q Consensus 157 ~~~~gv~~~~v-~~~~~-------~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~p 228 (564)
...+|.+.+.+ |...+ +...|...| +=++..+.+|. ....|...+..+++.+...... ++
T Consensus 76 WlI~G~P~vIL~D~~s~~~~ldeik~~lW~~~g--IdS~~~~~dyn-ea~~Fgyava~fi~~f~~~~~~---------~~ 143 (633)
T PF05693_consen 76 WLIPGRPIVILFDFGSFFWKLDEIKGELWELFG--IDSPHGDGDYN-EAVMFGYAVAWFIEEFYKFYEE---------KP 143 (633)
T ss_dssp ESSTT--EEEEEEGGGGGGGHHHHHHHHHHHH-------TT-HHHH-HHHHHHHHHHHHHHHHHHH-S----------SE
T ss_pred eeECCcCeEEEEeCchHHHHHHHHHHHHHHHcC--CCCCCCCcchh-HHHHHHHHHHHHHHHHHHhhcC---------CC
Confidence 77778775554 54322 233442111 11222222222 2234444444444444433321 47
Q ss_pred CEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCC---CCCccCc
Q 008488 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGY---NKPVRGR 305 (564)
Q Consensus 229 DvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~ 305 (564)
.||.|+|+|+++....+++... +.+.+|||.|.... ||+- .+-...++..+...++- .+.-...
T Consensus 144 ~ViaHfHEWmaG~gll~lr~~~------~~VaTvFTTHAT~l-GR~l------~~~~~~~Y~~L~~~~~d~eA~~~~i~~ 210 (633)
T PF05693_consen 144 KVIAHFHEWMAGVGLLYLRKRK------PDVATVFTTHATLL-GRYL------AANNKDFYNNLDKFNGDQEAGERNIYH 210 (633)
T ss_dssp EEEEEEESGGGTTHHHHHHHTT-------SCEEEEEESS-HH-HHHH------TTTSS-TTTSGTTS-HHHHHHHTT-HH
T ss_pred cEEEEechHhHhHHHHHHhccC------CCeeEEEEecccch-hhHh------hcCCCcHHHHhhccCccccccCccchH
Confidence 8899999999999888888765 68999999996433 2220 00011111111111000 0000123
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
+..+++++...||.+.|||+-++.+-.. ++.+.+-.++|||+++..+..... ...-.+.
T Consensus 211 k~~iEraaA~~AdvFTTVSeITa~Ea~~----------LL~r~pDvV~pNGl~v~~~~~~~e-----------fqnl~~~ 269 (633)
T PF05693_consen 211 KHSIERAAAHYADVFTTVSEITAKEAEH----------LLKRKPDVVTPNGLNVDKFPALHE-----------FQNLHAK 269 (633)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHHHHH----------HHSS--SEE----B-GGGTSSTTH-----------HHHHHHH
T ss_pred HHHHHHHHHHhcCeeeehhhhHHHHHHH----------HhCCCCCEEcCCCccccccccchH-----------HHHHHHH
Confidence 5677888999999999999999988764 233335578999999987765431 0011223
Q ss_pred HHHHH----HHHh-C-CCCC-CCccEEEEEeccc-cccCHHHHHHHHHhccc------CC---eEEEEEeCCC-----h-
Q 008488 386 LKEAL----QAEV-G-LPVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK------EN---VQIIVLGTGK-----K- 442 (564)
Q Consensus 386 ~~~~l----~~~~-g-l~~~-~~~~~i~~iGrl~-~~KG~d~ll~A~~~l~~------~~---v~lvIvG~g~-----~- 442 (564)
.|+.+ +..+ | +.-+ ++..+|..+||++ ..||+|.+|+|+..|.. .+ +-|+|+=... +
T Consensus 270 ~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~ 349 (633)
T PF05693_consen 270 AKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVES 349 (633)
T ss_dssp HHHHHHHHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHH
T ss_pred HHHHHHHHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHH
Confidence 33332 3333 2 1112 2456778899998 69999999999998843 23 3344443211 0
Q ss_pred --------hhHHHHH-----------------------------------------------------------------
Q 008488 443 --------PMEKQLE----------------------------------------------------------------- 449 (564)
Q Consensus 443 --------~~~~~l~----------------------------------------------------------------- 449 (564)
.+++.+.
T Consensus 350 l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~ 429 (633)
T PF05693_consen 350 LKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNM 429 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHH
Confidence 1111111
Q ss_pred --HHHH----hCCCceEEEecc-C------hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccc
Q 008488 450 --QLEI----LYPEKARGVAKF-N------IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 516 (564)
Q Consensus 450 --~L~~----~~~~~v~~~~~~-~------~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~ 516 (564)
++.- ..+-+|+++..| + .-...+++.++|+.|+||++||+|.+.+|+.++|+|.|+|+..|+...+.
T Consensus 430 irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~ 509 (633)
T PF05693_consen 430 IRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQ 509 (633)
T ss_dssp HHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHH
T ss_pred HHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHH
Confidence 1000 011256666665 1 12334699999999999999999999999999999999999988665444
No 93
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.61 E-value=2.5e-14 Score=142.19 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=131.9
Q ss_pred HHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
+=..+|.+++.|.++..++.+ .++. ....+++...+++.+. .
T Consensus 219 ~G~~ad~vm~NssWT~nHI~q--iW~~--------~~~~iVyPPC~~e~lk----------------------------s 260 (465)
T KOG1387|consen 219 AGSKADIVMTNSSWTNNHIKQ--IWQS--------NTCSIVYPPCSTEDLK----------------------------S 260 (465)
T ss_pred ccccceEEEecchhhHHHHHH--Hhhc--------cceeEEcCCCCHHHHH----------------------------H
Confidence 345899999999999998887 2332 2667788777765443 2
Q ss_pred HhCCCCCCCccEEEEEeccccccCHH-HHHHHHHhccc------CCeEEEEEeCCC----hhhHHHHHHHHHhCC--Cce
Q 008488 393 EVGLPVDRNIPVIGFIGRLEEQKGSD-ILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILYP--EKA 459 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d-~ll~A~~~l~~------~~v~lvIvG~g~----~~~~~~l~~L~~~~~--~~v 459 (564)
..+. ++...+.++++|.+.|+|++. +-++|+....+ .+++|+|+|+-. .+.-+.++.+++.+. .++
T Consensus 261 ~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v 339 (465)
T KOG1387|consen 261 KFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHV 339 (465)
T ss_pred Hhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccce
Confidence 2333 244668999999999999999 44455555444 478999999743 244556666666553 678
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc-ccccccc---CcceeEe
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEE---GFTGFQM 524 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~v~~---g~~G~l~ 524 (564)
.+....+-+.+-.++..|.+.|++..-|.||+.+.|+||+|+-+|+.+.|| .-|+|.+ ..|||+.
T Consensus 340 ~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla 408 (465)
T KOG1387|consen 340 QFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLA 408 (465)
T ss_pred EEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeec
Confidence 888888999998999999999999999999999999999999999999877 5567764 3579983
No 94
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-12 Score=129.79 Aligned_cols=267 Identities=15% Similarity=0.145 Sum_probs=168.3
Q ss_pred CCCEEEEEcCC--CcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccC
Q 008488 227 GEDVVFVANDW--HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (564)
Q Consensus 227 ~pDvIih~h~~--~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (564)
++| +|...+. .+.+..|.+.... +++|.++++||..|.- .+ .+.-+...|+..
T Consensus 103 ~~~-~ilvQNPP~iPtliv~~~~~~l------~~~KfiIDWHNy~Ysl--------~l----------~~~~g~~h~lV~ 157 (444)
T KOG2941|consen 103 PPD-IILVQNPPSIPTLIVCVLYSIL------TGAKFIIDWHNYGYSL--------QL----------KLKLGFQHPLVR 157 (444)
T ss_pred CCc-EEEEeCCCCCchHHHHHHHHHH------hcceEEEEehhhHHHH--------HH----------HhhcCCCCchHH
Confidence 589 5555543 3345566655443 6999999999988720 00 111122223322
Q ss_pred chhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-----ccCC----CCCCCccccccccC
Q 008488 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-----DVQE----WNPLTDKYIGVKYD 375 (564)
Q Consensus 305 ~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-----d~~~----~~p~~~~~~~~~~~ 375 (564)
-....++..-+.||.-+||++.+++++.+ .+|+. +..++|.-. +.++ |.+.. .-+.
T Consensus 158 l~~~~E~~fgk~a~~nLcVT~AMr~dL~q--nWgi~--------ra~v~YDrPps~~~~l~~~H~lf~~l~-----~d~~ 222 (444)
T KOG2941|consen 158 LVRWLEKYFGKLADYNLCVTKAMREDLIQ--NWGIN--------RAKVLYDRPPSKPTPLDEQHELFMKLA-----GDHS 222 (444)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHH--hcCCc--------eeEEEecCCCCCCCchhHHHHHHhhhc-----cccc
Confidence 22333445557899999999999999887 46764 344444211 1111 11111 0011
Q ss_pred cch--hhhccHHHHHHHHHHhC--C-CC-CCCccEEEEEeccccccCHHHHHHHHHhccc---------CCeEEEEEeCC
Q 008488 376 AST--VMDAKPLLKEALQAEVG--L-PV-DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK---------ENVQIIVLGTG 440 (564)
Q Consensus 376 ~~~--~~~~~~~~~~~l~~~~g--l-~~-~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~---------~~v~lvIvG~g 440 (564)
+.. ..+.++.+..++-++.. . .- .....+++....+.|..++.+|++|+....+ |.+-.+|.|.|
T Consensus 223 ~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG 302 (444)
T KOG2941|consen 223 PFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG 302 (444)
T ss_pred hhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC
Confidence 111 12445555556655543 1 00 1122467778889999999999999984421 56778888888
Q ss_pred ChhhHHHHHHHHHhCC-CceEEEecc-ChHHHHHHHHhcCEEEE--cCCC-CCCcHHHHHHHHcCCcEEEcCcccccccc
Q 008488 441 KKPMEKQLEQLEILYP-EKARGVAKF-NIPLAHMIIAGADFILI--PSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTV 515 (564)
Q Consensus 441 ~~~~~~~l~~L~~~~~-~~v~~~~~~-~~~~~~~il~~ADv~v~--PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v 515 (564)
+ +++...+...+++ .++.+...+ ..++.+.+++.||+.|. +|.. --.|++++...-||+||++-+...+.|+|
T Consensus 303 P--lkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELV 380 (444)
T KOG2941|consen 303 P--LKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELV 380 (444)
T ss_pred c--hhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHH
Confidence 8 3333334444443 355554444 78889999999998765 4444 36899999999999999999999999999
Q ss_pred ccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 516 EEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 516 ~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+|++||++| .|.++||+.+.
T Consensus 381 kh~eNGlvF------------~Ds~eLa~ql~ 400 (444)
T KOG2941|consen 381 KHGENGLVF------------EDSEELAEQLQ 400 (444)
T ss_pred hcCCCceEe------------ccHHHHHHHHH
Confidence 999999997 45666666553
No 95
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.9e-13 Score=138.56 Aligned_cols=186 Identities=28% Similarity=0.444 Sum_probs=140.6
Q ss_pred hcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhC
Q 008488 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (564)
Q Consensus 316 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (564)
..+.+++.+....+.+.. ... ..++..++|+++...+.+. ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~---------------------------~~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA---LGV-------PNKIVVIPNGIDTEKFAPA---------------------------RIG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH---hCC-------CCCceEecCCcCHHHcCcc---------------------------ccC
Confidence 378888998887555554 111 1167889999998877652 011
Q ss_pred CCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHH
Q 008488 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAH 471 (564)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~ 471 (564)
+..+.....++++||+.+.||++.+++++..+.+ +++.++++|.++.. ...+..+..++. .++.+.+..+.++..
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 193 LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 1111113689999999999999999999999976 34899999998742 233333444443 467777777756666
Q ss_pred HHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 472 ~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+++.||++++||.+|++|++++|||++|+|+|+++.++..|++.++.+|++ +++.|.+++++++...
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~----------~~~~~~~~~~~~i~~~ 339 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLL----------VPPGDVEELADALEQL 339 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEe----------cCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999877885 5666788888776544
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.54 E-value=1.3e-14 Score=130.35 Aligned_cols=126 Identities=29% Similarity=0.354 Sum_probs=91.8
Q ss_pred ccEEEEEeccccccCHHHHHH-HHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 402 IPVIGFIGRLEEQKGSDILAA-AIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~-A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
.++++++|++.+.||++.+++ +++++.+ ++++|+|+|.+++ +++++ .. .++++++.. +++.++++.||
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~----~l~~~-~~--~~v~~~g~~--~e~~~~l~~~d 72 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD----ELKRL-RR--PNVRFHGFV--EELPEILAAAD 72 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCH-HH--CTEEEE-S---HHHHHHHHC-S
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH----HHHHh-cC--CCEEEcCCH--HHHHHHHHhCC
Confidence 368999999999999999999 9999975 7999999999875 25555 22 368888888 46778999999
Q ss_pred EEEEcCC-CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 479 FILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+++.|+. .|+++.+++|||++|+|+|+++. +..+++.....|.. + ++|+++++++|.+
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~----------~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVL----------V-ANDPEELAEAIER 131 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE------------TT-HHHHHHHHHH
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEE----------E-CCCHHHHHHHHHH
Confidence 9999997 58899999999999999999999 67777765667775 5 7899999998864
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.45 E-value=1.2e-11 Score=131.50 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=101.6
Q ss_pred HHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHH
Q 008488 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (564)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (564)
+...+.+|.|++.++...+.+.. +|+ +...+.|++......... .+.+.
T Consensus 133 r~l~~~~d~v~~~~~~e~~~~~~---~g~---------~~~~vGnPv~~~~~~~~~-------------------~~~~~ 181 (385)
T TIGR00215 133 KKIEKATDFLLAILPFEKAFYQK---KNV---------PCRFVGHPLLDAIPLYKP-------------------DRKSA 181 (385)
T ss_pred HHHHHHHhHhhccCCCcHHHHHh---cCC---------CEEEECCchhhhccccCC-------------------CHHHH
Confidence 34456899999999998888764 332 455666766322111001 14556
Q ss_pred HHHhCCCCCCCccEEEEE-e-cccc-ccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEe
Q 008488 391 QAEVGLPVDRNIPVIGFI-G-RLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVA 463 (564)
Q Consensus 391 ~~~~gl~~~~~~~~i~~i-G-rl~~-~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~ 463 (564)
++++|++.+ .++|++. | |..+ .|++..+++|++.+.+ +++++++.+.... .++.++++...+. ..+..+.
T Consensus 182 r~~lgl~~~--~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 258 (385)
T TIGR00215 182 REKLGIDHN--GETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-RRLQFEQIKAEYGPDLQLHLID 258 (385)
T ss_pred HHHcCCCCC--CCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-hHHHHHHHHHHhCCCCcEEEEC
Confidence 788998644 3666554 3 6766 7999999999998865 6888877654321 2344555444442 2344332
Q ss_pred ccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 464 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 464 ~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
. ....+|++||++|.+| |.+.+|+|++|+|+|..
T Consensus 259 ---~-~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~ 292 (385)
T TIGR00215 259 ---G-DARKAMFAADAALLAS-----GTAALEAALIKTPMVVG 292 (385)
T ss_pred ---c-hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEE
Confidence 2 2346999999999999 88888999999998887
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.42 E-value=1.2e-12 Score=121.70 Aligned_cols=177 Identities=21% Similarity=0.269 Sum_probs=92.8
Q ss_pred EEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEEE
Q 008488 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (564)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (564)
|+++... .|. .||++.++.+|+++|+++||+|+++++..+..... ......
T Consensus 1 ili~~~~-~~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~--------------------------~~~~~~ 51 (177)
T PF13439_consen 1 ILITNIF-LPN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE--------------------------ELVKIF 51 (177)
T ss_dssp -EEECC--TTS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS--------------------------TEEEE-
T ss_pred CEEEEec-CCC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh--------------------------hcccee
Confidence 4555544 453 89999999999999999999999999875432221 000000
Q ss_pred EeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHH
Q 008488 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYL 246 (564)
Q Consensus 167 v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l 246 (564)
...+.. ......+.......+.+.+++. +|| |||+|.+.........
T Consensus 52 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~------------~~D-iVh~~~~~~~~~~~~~ 98 (177)
T PF13439_consen 52 VKIPYP--------------------IRKRFLRSFFFMRRLRRLIKKE------------KPD-IVHIHGPPAFWIALLA 98 (177)
T ss_dssp --TT-S--------------------STSS--HHHHHHHHHHHHHHHH------------T-S-EEECCTTHCCCHHHHH
T ss_pred eeeecc--------------------cccccchhHHHHHHHHHHHHHc------------CCC-eEEecccchhHHHHHh
Confidence 000000 0111122223344555555554 499 7899986655444332
Q ss_pred HhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHH
Q 008488 247 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 326 (564)
Q Consensus 247 ~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 326 (564)
.. +.|+++++|+..... ...... ..+.......+++...+.+|.++++|+.
T Consensus 99 ~~---------~~~~v~~~H~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ii~vS~~ 149 (177)
T PF13439_consen 99 CR---------KVPIVYTIHGPYFER-------RFLKSK-------------LSPYSYLNFRIERKLYKKADRIIAVSES 149 (177)
T ss_dssp HH---------CSCEEEEE-HHH--H-------HTTTTS-------------CCCHHHHHHCTTHHHHCCSSEEEESSHH
T ss_pred cc---------CCCEEEEeCCCcccc-------cccccc-------------cchhhhhhhhhhhhHHhcCCEEEEECHH
Confidence 22 579999999654210 000000 0000011122234447789999999999
Q ss_pred HHHHHHcCccCCCcchhhhhccceEEecCCcccCCCC
Q 008488 327 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN 363 (564)
Q Consensus 327 ~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~ 363 (564)
+++++.+ +|++.+ ++.+||||+|++.|.
T Consensus 150 ~~~~l~~---~~~~~~------ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 150 TKDELIK---FGIPPE------KIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHHHHH---HT--SS-------EEE----B-CCCH-
T ss_pred HHHHHHH---hCCccc------CCEEEECCccHHHcC
Confidence 9999997 666544 899999999998763
No 99
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.1e-12 Score=142.61 Aligned_cols=415 Identities=20% Similarity=0.235 Sum_probs=259.2
Q ss_pred cCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc-cc-------------cccCc------------ceEE--EEEeC
Q 008488 95 APWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YK-------------DAWDT------------DVVI--ELKVG 146 (564)
Q Consensus 95 ~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~-~~-------------~~~~~------------~~~~--~~~~~ 146 (564)
-|- ..||+|.........++..|.-.+-+.-+|.+ +. +.|.. .... .+...
T Consensus 110 ~p~-lgGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~ 188 (750)
T COG0058 110 DPG-LGGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGY 188 (750)
T ss_pred Ccc-ccccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEec
Confidence 354 34999999999999999999988888776542 11 11211 0111 22223
Q ss_pred C-eeeeEEEEEeeecCeeEEEEeCCccccccc-CCCCCcccCCCCCCCCcchhHHH---HHHHHHHHHhhhhhc-cCCCC
Q 008488 147 D-KIEKVRFFHCHKRGVDRVFVDHPWFLAKVW-GKTQSKIYGPRTGEDYQDNQLRF---SLLCQAALEAPRILN-LNSNK 220 (564)
Q Consensus 147 ~-~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w-~~~~~~iy~~~~~~~~~~~~~r~---~~~~~~~l~~~~~l~-~~~~~ 220 (564)
+ .....+.+......+++++.+...--.+-| .+.-..||+..+ +.+|+ .+++.+.++.+.++. ...
T Consensus 189 ~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds------~elRl~Qeyfl~~agvq~I~~~~~~~~-- 260 (750)
T COG0058 189 DNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS------KELRLKQEYFLGSAGVQDILARGHLEH-- 260 (750)
T ss_pred cCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCc------HHHHHhhhheeeeHHHHHHHHHhhhcc--
Confidence 3 344555665555556777765322100000 011236787544 33333 466777777666652 110
Q ss_pred CCCCCCCCCEEEEEcCCCcchHHHH-HHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCccccc
Q 008488 221 YFSGPYGEDVVFVANDWHTSLIPCY-LKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFKS 290 (564)
Q Consensus 221 ~~~~~~~pDvIih~h~~~~~~~~~~-l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~~~~~ 290 (564)
+...+- +.|.||-|++++..- ++......+. ....-++||.|.....+ .|+...+..+ +|..+.-
T Consensus 261 ---~~~~~~-~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~-lpr~~~i 335 (750)
T COG0058 261 ---HDLDVL-ADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKL-LPRHLQI 335 (750)
T ss_pred ---ccccch-hhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHH-hhhhhhh
Confidence 012244 678999998876653 3322222211 12346889999876544 4443333221 1111100
Q ss_pred ----------ccccccC-----CCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCc---cCCCcchhhhhccceEE
Q 008488 291 ----------SFDFIDG-----YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKG 352 (564)
Q Consensus 291 ----------~~~~~~~-----~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~~ 352 (564)
....... ...+... .++...++..|..|..||+-..+..++.. .+++. +.+|.-
T Consensus 336 i~~in~~~l~~~~~~~~~~~~~~~~~i~~--v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~------p~~i~n 407 (750)
T COG0058 336 IYEINARFLPEVRLLYLGDLIRRGSPIEE--VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLY------PEKINN 407 (750)
T ss_pred HHHHHhhhhHHHHhhccccccccCCcccc--eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccC------cccccc
Confidence 0000000 0011111 45566678888999999987766554422 12333 337889
Q ss_pred ecCCcccCCCCCCCccccccccCcc--------------------------hhhhccHHHHHH----HHHHhCCCCCCCc
Q 008488 353 IVNGMDVQEWNPLTDKYIGVKYDAS--------------------------TVMDAKPLLKEA----LQAEVGLPVDRNI 402 (564)
Q Consensus 353 I~NGid~~~~~p~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~----l~~~~gl~~~~~~ 402 (564)
+.|||.+..|-....+-|...|+.. .+.+.|..+|.. +..+.|+..+++.
T Consensus 408 vTNGIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~ 487 (750)
T COG0058 408 VTNGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNA 487 (750)
T ss_pred ccCCcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCc
Confidence 9999999988655555555555555 233444445543 3456688888888
Q ss_pred cEEEEEeccccccCHHHHHHHHHh----ccc---CCeEEEEEeCCC------hhhHHHHHHHHHhCC--CceEEEeccCh
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPH----FIK---ENVQIIVLGTGK------KPMEKQLEQLEILYP--EKARGVAKFNI 467 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~----l~~---~~v~lvIvG~g~------~~~~~~l~~L~~~~~--~~v~~~~~~~~ 467 (564)
..++++-|+.++|+..+.+.-+.. +++ +.+++++.|... +.+.+.+.+.+...+ .+|.++..|+.
T Consensus 488 lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdv 567 (750)
T COG0058 488 LFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDV 567 (750)
T ss_pred ceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCCh
Confidence 999999999999998876654433 332 458888889764 245555666655533 47899999999
Q ss_pred HHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCccccccccc--cCcceeEeecccccc
Q 008488 468 PLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDV 531 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~--~g~~G~l~~~~~~~~ 531 (564)
..+..++.+||+....|+. |++|++-+-+|..|.+.|+|-.|...|+.+ ++.|||+||....+.
T Consensus 568 slA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v 635 (750)
T COG0058 568 SLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEV 635 (750)
T ss_pred hHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhH
Confidence 9999999999999999985 999999999999999999999999999997 889999999777543
No 100
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.36 E-value=2.2e-12 Score=117.93 Aligned_cols=160 Identities=23% Similarity=0.223 Sum_probs=87.2
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEEEEeCCcccccccCCC
Q 008488 101 GGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180 (564)
Q Consensus 101 GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~ 180 (564)
||++.++.+|+++|+++||+|+++++..+..... ...+|+.++.++.+.....
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~----- 53 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE----------------------EEEDGVRVHRLPLPRRPWP----- 53 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S----------------------EEETTEEEEEE--S-SSSG-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc----------------------cccCCceEEeccCCccchh-----
Confidence 8999999999999999999999999875433220 1235777777754422110
Q ss_pred CCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCe
Q 008488 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 260 (564)
Q Consensus 181 ~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~k 260 (564)
+. ... +...+..++... ..+|| |||+|++..+++..++++. .++|
T Consensus 54 ---~~----------~~~----~~~~~~~~l~~~----------~~~~D-vv~~~~~~~~~~~~~~~~~-------~~~p 98 (160)
T PF13579_consen 54 ---LR----------LLR----FLRRLRRLLAAR----------RERPD-VVHAHSPTAGLVAALARRR-------RGIP 98 (160)
T ss_dssp ---GG----------HCC----HHHHHHHHCHHC----------T---S-EEEEEHHHHHHHHHHHHHH-------HT--
T ss_pred ---hh----------hHH----HHHHHHHHHhhh----------ccCCe-EEEecccchhHHHHHHHHc-------cCCc
Confidence 00 011 112222333111 13699 8999997766666666634 3899
Q ss_pred EEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCc
Q 008488 261 VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 340 (564)
Q Consensus 261 vv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~ 340 (564)
+|+++|+...... ..+. ......+++..++.+|.++++|+..++.+.+ +|++
T Consensus 99 ~v~~~h~~~~~~~------------~~~~-------------~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~---~g~~ 150 (160)
T PF13579_consen 99 LVVTVHGTLFRRG------------SRWK-------------RRLYRWLERRLLRRADRVIVVSEAMRRYLRR---YGVP 150 (160)
T ss_dssp EEEE-SS-T------------------HH-------------HHHHHHHHHHHHHH-SEEEESSHHHHHHHHH---H---
T ss_pred EEEEECCCchhhc------------cchh-------------hHHHHHHHHHHHhcCCEEEECCHHHHHHHHH---hCCC
Confidence 9999996332110 0000 0112344677889999999999999999997 6776
Q ss_pred chhhhhccceEEecCC
Q 008488 341 LDNIIRKTGIKGIVNG 356 (564)
Q Consensus 341 ~~~~~~~~~i~~I~NG 356 (564)
.+ ++.+||||
T Consensus 151 ~~------ri~vipnG 160 (160)
T PF13579_consen 151 PD------RIHVIPNG 160 (160)
T ss_dssp GG------GEEE----
T ss_pred CC------cEEEeCcC
Confidence 55 99999998
No 101
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.33 E-value=3.8e-11 Score=129.85 Aligned_cols=261 Identities=19% Similarity=0.225 Sum_probs=153.3
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCcccccc-ccccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFE-DFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|-.||+|..++|.+++... +++++.|.+| -.||.. .|+.+. .
T Consensus 142 ~D-~VWVhDYhL~llP~~LR~~~------~~~~IgfFlH-----iPFPs~e~fr~lP----------------------~ 187 (474)
T PF00982_consen 142 GD-LVWVHDYHLMLLPQMLRERG------PDARIGFFLH-----IPFPSSEIFRCLP----------------------W 187 (474)
T ss_dssp T--EEEEESGGGTTHHHHHHHTT--------SEEEEEE------S----HHHHTTST----------------------T
T ss_pred CC-EEEEeCCcHHHHHHHHHhhc------CCceEeeEEe-----cCCCCHHHHhhCC----------------------c
Confidence 46 99999999999999999876 6899999999 344422 112221 1
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcchhh---h----hccceEEecCCcccCCCCCCCccccccccCcc
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDNI---I----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~~---~----~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~ 377 (564)
...+-.++..+|.|-+.+..+++.|.+... .|.+...- + +...+.+.|-|||++.+......
T Consensus 188 r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~--------- 258 (474)
T PF00982_consen 188 REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARS--------- 258 (474)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH----------
T ss_pred HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccC---------
Confidence 233445788999999999999998866331 22221100 0 11346677778887665321100
Q ss_pred hhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCC----h---hh
Q 008488 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K---PM 444 (564)
Q Consensus 378 ~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~----~---~~ 444 (564)
.+-....+.++++++- +..+|+-+.|++..||+..=++|++.+.+ .++.|+-++... + ++
T Consensus 259 ---~~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~ 331 (474)
T PF00982_consen 259 ---PEVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQEL 331 (474)
T ss_dssp ---S---HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHH
T ss_pred ---hHHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHH
Confidence 0111223567777652 23799999999999999999999999876 367787776422 2 34
Q ss_pred HHHHHHHHH----hCCC-c---eEEEe-ccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCcccc
Q 008488 445 EKQLEQLEI----LYPE-K---ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGL 511 (564)
Q Consensus 445 ~~~l~~L~~----~~~~-~---v~~~~-~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~ 511 (564)
+++++++.. +++. . |.++. .++.++...+|+.||+++++|..+|..++..|+.+|... +|.|...|.
T Consensus 332 ~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGa 411 (474)
T PF00982_consen 332 RREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGA 411 (474)
T ss_dssp HHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGG
T ss_pred HHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCH
Confidence 555555544 3431 1 33333 467788888999999999999999999999999999665 777777777
Q ss_pred ccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 512 VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 512 ~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
.+.+.++ .++ |+|.|++++|++|.++.
T Consensus 412 a~~L~~~--al~----------VNP~d~~~~A~ai~~AL 438 (474)
T PF00982_consen 412 AEQLSEA--ALL----------VNPWDIEEVADAIHEAL 438 (474)
T ss_dssp GGT-TTS---EE----------E-TT-HHHHHHHHHHHH
T ss_pred HHHcCCc--cEE----------ECCCChHHHHHHHHHHH
Confidence 7777653 144 89999999999987754
No 102
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.33 E-value=3.1e-11 Score=129.18 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=178.4
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
-| +|-.||+|..++|.+++.+. ++.++-|.+| -.||..+ |..+..
T Consensus 124 ~D-~VWVHDYhL~llp~~LR~~~------~~~~IgFFlH-----iPFPs~eifr~LP~---------------------- 169 (474)
T PRK10117 124 DD-IIWIHDYHLLPFASELRKRG------VNNRIGFFLH-----IPFPTPEIFNALPP---------------------- 169 (474)
T ss_pred CC-EEEEeccHhhHHHHHHHHhC------CCCcEEEEEe-----CCCCChHHHhhCCC----------------------
Confidence 36 99999999999999999875 6889999999 3344221 122210
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcch--hhh----hccceEEecCCcccCCCCCCCccccccccCcch
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD--NII----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~--~~~----~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~ 378 (564)
..-+-.++..+|.|-+-+..+++.+.+... .|.+.. ..+ +...+...|-|||++.|......
T Consensus 170 r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~---------- 239 (474)
T PRK10117 170 HDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG---------- 239 (474)
T ss_pred hHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc----------
Confidence 123445678999999999999988776332 122210 000 12357788889998776532210
Q ss_pred hhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCC-------hhhH
Q 008488 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK-------KPME 445 (564)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~-------~~~~ 445 (564)
......++++++++ +..+|+-+.|++.-||+..=++|++.+.+ .++.|+-+.... .+++
T Consensus 240 ---~~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~ 311 (474)
T PRK10117 240 ---PLPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIR 311 (474)
T ss_pred ---hHHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHH
Confidence 01112345666664 34689999999999999999999999876 367777666432 2456
Q ss_pred HHHHHHHHhCCC-----c---eEE-EeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCcccc
Q 008488 446 KQLEQLEILYPE-----K---ARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGGL 511 (564)
Q Consensus 446 ~~l~~L~~~~~~-----~---v~~-~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~-----PvI~s~~gg~ 511 (564)
.+++++..+.++ . +.+ .-.++.+++-.+|+.||+++++|..+|..|+..|+.+|.. +.|.|...|.
T Consensus 312 ~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGa 391 (474)
T PRK10117 312 HQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (474)
T ss_pred HHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccch
Confidence 666666554321 1 222 2234777777899999999999999999999999999965 3677777666
Q ss_pred ccccccCcceeEeeccccccccCCCCCHHHHHhhcccCCc
Q 008488 512 VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDST 551 (564)
Q Consensus 512 ~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~~ 551 (564)
.+.+.+ .++ |+|.|.+++|++|.++.+
T Consensus 392 A~~L~~---All----------VNP~d~~~~A~Ai~~AL~ 418 (474)
T PRK10117 392 ANELTS---ALI----------VNPYDRDEVAAALDRALT 418 (474)
T ss_pred HHHhCC---CeE----------ECCCCHHHHHHHHHHHHc
Confidence 666642 344 899999999999877653
No 103
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.24 E-value=8e-10 Score=123.83 Aligned_cols=296 Identities=18% Similarity=0.220 Sum_probs=191.6
Q ss_pred CCEEEEEcCCCcchHHH-HHHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCcccc------cc
Q 008488 228 EDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFK------SS 291 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~-~l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~~~~------~~ 291 (564)
..++||.||-|++++.. +++......+. .....++||.|.+...+ .|+...+..+ +|..+. ..
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~-lpr~l~Ii~eIn~~ 391 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKI-LPRHLQIIFEINDY 391 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHH-ccHhhhHHHHHHHH
Confidence 34599999999987655 44333211111 12346899999875533 4444433322 111110 00
Q ss_pred cc-cc-c---------CCCCCc---cCchhHHHHHHHHhcceeccCCHHHHHHHHcCc---cCCCcchhhhhccceEEec
Q 008488 292 FD-FI-D---------GYNKPV---RGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIV 354 (564)
Q Consensus 292 ~~-~~-~---------~~~~~~---~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~~I~ 354 (564)
|- .. . +....+ .+...++...++..|..|..||+-..+.+.+.- .+.+- +.++.-+.
T Consensus 392 fl~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~------P~kf~niT 465 (815)
T PRK14986 392 FLKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIF------PGRFCNVT 465 (815)
T ss_pred HHHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhC------CCcccccC
Confidence 00 00 0 000000 012456777788889999999886665542211 11111 23566799
Q ss_pred CCcccCCCC----CCCcccccc------------------ccCcch----hhhccHHHHHHH----HHHhCCCCCCCccE
Q 008488 355 NGMDVQEWN----PLTDKYIGV------------------KYDAST----VMDAKPLLKEAL----QAEVGLPVDRNIPV 404 (564)
Q Consensus 355 NGid~~~~~----p~~~~~~~~------------------~~~~~~----~~~~~~~~~~~l----~~~~gl~~~~~~~~ 404 (564)
|||....|- |.-...+.. ..+.+. +.+.|..+|..| +++.|...|++...
T Consensus 466 NGV~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLf 545 (815)
T PRK14986 466 NGVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALF 545 (815)
T ss_pred CCCChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccce
Confidence 999988875 321111110 111222 345555556554 55779888888899
Q ss_pred EEEEeccccccCHHH-HHHHHHhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHH------hCCC--ceE
Q 008488 405 IGFIGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEI------LYPE--KAR 460 (564)
Q Consensus 405 i~~iGrl~~~KG~d~-ll~A~~~l---~~-~-----~v~lvIvG~g~------~~~~~~l~~L~~------~~~~--~v~ 460 (564)
++++-|+.++|+..+ ++..+..+ .+ + ++++++.|... +.+-+.+-+++. ...+ +|.
T Consensus 546 d~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVV 625 (815)
T PRK14986 546 DVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVV 625 (815)
T ss_pred eeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEE
Confidence 999999999999999 66665444 33 2 58899999754 245555555555 2334 799
Q ss_pred EEeccChHHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeeccccc
Q 008488 461 GVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVD 530 (564)
Q Consensus 461 ~~~~~~~~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~~ 530 (564)
|+..|+...+..++.+||+....|+. |++|++-+-+|..|.+.++|-.|.+.|+.++ ++|||.||.-..+
T Consensus 626 FlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~e 699 (815)
T PRK14986 626 FIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEE 699 (815)
T ss_pred EeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHH
Confidence 99999999999999999999999984 9999999999999999999999999999987 8899999855443
No 104
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.23 E-value=1.6e-10 Score=133.04 Aligned_cols=260 Identities=14% Similarity=0.173 Sum_probs=174.5
Q ss_pred CEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCchh
Q 008488 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (564)
Q Consensus 229 DvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (564)
| +|-.||+|..++|.+|+.+. +++++-|.+| -.||..+ |+.+. ..
T Consensus 203 d-~VWVhDYhL~llP~~LR~~~------~~~~IgfFlH-----iPFPs~eifr~LP----------------------~r 248 (854)
T PLN02205 203 D-FVWIHDYHLMVLPTFLRKRF------NRVKLGFFLH-----SPFPSSEIYKTLP----------------------IR 248 (854)
T ss_pred C-EEEEeCchhhHHHHHHHhhC------CCCcEEEEec-----CCCCChHHHhhCC----------------------cH
Confidence 7 89999999999999998875 7899999999 4444322 12221 11
Q ss_pred HHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcchh---------hhhccceEEecCCcccCCCCCCCccccccccCc
Q 008488 308 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN---------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (564)
Q Consensus 308 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~---------~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~ 376 (564)
.-+-.++..||.|-+.+..+++.|.+.+. .|.+.+. .=+...+.+.|-|||+..|......
T Consensus 249 ~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~-------- 320 (854)
T PLN02205 249 EELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSL-------- 320 (854)
T ss_pred HHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcC--------
Confidence 22345678999999999999998876332 2322111 0023357788889988776432210
Q ss_pred chhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C----CeEEEEEeCCC-------hh
Q 008488 377 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK-------KP 443 (564)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~----~v~lvIvG~g~-------~~ 443 (564)
.......++++++++- ++..+|+-+.|++..||+..=+.|++++.+ | ++.||-+.... .+
T Consensus 321 ----~~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~ 393 (854)
T PLN02205 321 ----PETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKE 393 (854)
T ss_pred ----hhHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHH
Confidence 0011123456666642 245799999999999999999999999976 3 56677665422 24
Q ss_pred hHHHHHHHHHh----CCC----ceEEE-eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCC-------------
Q 008488 444 MEKQLEQLEIL----YPE----KARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT------------- 501 (564)
Q Consensus 444 ~~~~l~~L~~~----~~~----~v~~~-~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~------------- 501 (564)
++.+++++..+ ++. -|.++ ..++.+++-.+|+.||+++++|..+|..|+..|+.+|..
T Consensus 394 ~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~ 473 (854)
T PLN02205 394 VQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEP 473 (854)
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCcccccccccccc
Confidence 55555555543 331 13333 335778888899999999999999999999999998854
Q ss_pred ------cEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 502 ------VPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 502 ------PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
+.|.|..-|....+. ++..|+|.|++++|++|.++.
T Consensus 474 ~~~~~gvLiLSEfaGaa~~L~-------------~Ai~VNP~d~~~~a~ai~~AL 515 (854)
T PLN02205 474 STPKKSMLVVSEFIGCSPSLS-------------GAIRVNPWNIDAVADAMDSAL 515 (854)
T ss_pred ccCCCCceEeeeccchhHHhC-------------cCeEECCCCHHHHHHHHHHHH
Confidence 244444433333332 133499999999999987665
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=3.4e-09 Score=113.17 Aligned_cols=281 Identities=17% Similarity=0.206 Sum_probs=185.5
Q ss_pred hhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCcccc
Q 008488 196 NQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFA 275 (564)
Q Consensus 196 ~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~ 275 (564)
.+..+....+...+.+..+-. .-| +|-.||+|..++|.+++.+. ++.++.|.+| -.||
T Consensus 126 ~w~~Y~~vN~~FAd~i~~~~~----------~gD-iIWVhDYhL~L~P~mlR~~~------~~~~IgfFlH-----iPfP 183 (486)
T COG0380 126 WWDAYVKVNRKFADKIVEIYE----------PGD-IIWVHDYHLLLVPQMLRERI------PDAKIGFFLH-----IPFP 183 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----------CCC-EEEEEechhhhhHHHHHHhC------CCceEEEEEe-----CCCC
Confidence 344454455555554444321 247 99999999999999999876 7889999999 3444
Q ss_pred ccc-cccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccC--C------Ccchhh-h
Q 008488 276 FED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDK--G------VELDNI-I 345 (564)
Q Consensus 276 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~--g------~~~~~~-~ 345 (564)
..+ |..+. . ..-.-.++..||.|-+-++.+++.|.+.+.. + +..+.. =
T Consensus 184 ssEvfr~lP---------------------~-r~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~ 241 (486)
T COG0380 184 SSEVFRCLP---------------------W-REEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADG 241 (486)
T ss_pred CHHHHhhCc---------------------h-HHHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCC
Confidence 221 12211 0 1112346779999999999999887663321 1 110000 0
Q ss_pred hccceEEecCCcccCCCCCCCccccccccCcchhhhccH--HHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHH
Q 008488 346 RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP--LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAA 423 (564)
Q Consensus 346 ~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A 423 (564)
+..++..+|-|||+..+.-... .+. ....+++++++- +..+|+-+.|++.-||+..-+.|
T Consensus 242 ~~v~v~a~PIgID~~~~~~~~~--------------~~~v~~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~A 303 (486)
T COG0380 242 RIVKVGAFPIGIDPEEFERALK--------------SPSVQEKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLA 303 (486)
T ss_pred ceEEEEEEeeecCHHHHHHhhc--------------CCchhhHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHH
Confidence 1136778889999887754321 111 123455666543 25799999999999999999999
Q ss_pred HHhccc------CCeEEEEEeCCC----h---hhHHHHHHHHHh----CCC----ceEE-EeccChHHHHHHHHhcCEEE
Q 008488 424 IPHFIK------ENVQIIVLGTGK----K---PMEKQLEQLEIL----YPE----KARG-VAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 424 ~~~l~~------~~v~lvIvG~g~----~---~~~~~l~~L~~~----~~~----~v~~-~~~~~~~~~~~il~~ADv~v 481 (564)
+++|.+ .++.++-++... + .++.+++++..+ ++. -+.+ +-..+.+++..++..||+++
T Consensus 304 fe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~l 383 (486)
T COG0380 304 FERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVML 383 (486)
T ss_pred HHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceee
Confidence 999985 367777777543 2 255556555554 321 1222 22347788888999999999
Q ss_pred EcCCCCCCcHHHHHHHHcC----CcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCCc
Q 008488 482 IPSRFEPCGLIQLHAMRYG----TVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDST 551 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G----~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~~ 551 (564)
++|..|+..++..|+-+|. =+.|-|...|....+.+ -++ |+|.|.+.+|++|..+.+
T Consensus 384 VtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---Ali----------VNP~d~~~va~ai~~AL~ 444 (486)
T COG0380 384 VTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALI----------VNPWDTKEVADAIKRALT 444 (486)
T ss_pred eccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEe----------ECCCChHHHHHHHHHHhc
Confidence 9999999999999999883 25666665555555554 344 899999999998876653
No 106
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.13 E-value=7.8e-10 Score=121.35 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=101.8
Q ss_pred ccEEEEEe--ccccccCHHHHHHHHHhccc--CCeEEEEEeCCCh-hhHHHHHHHHHhC--C------------------
Q 008488 402 IPVIGFIG--RLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-PMEKQLEQLEILY--P------------------ 456 (564)
Q Consensus 402 ~~~i~~iG--rl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~-~~~~~l~~L~~~~--~------------------ 456 (564)
...+++++ || ++|.++.+++|+.++.. ++++|.+.|.+.. ++.+.++++.+++ .
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 35788888 99 99999999999999955 8999999998762 3444444332222 0
Q ss_pred -----------CceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEee
Q 008488 457 -----------EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMG 525 (564)
Q Consensus 457 -----------~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~ 525 (564)
..|.+.+-.++..+...+..+.++|.+|..|+++ .++||++.|+|+| .-|..++|+|+.||++
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~l-- 471 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYI-- 471 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEE--
Confidence 2344333335556778999999999999999999 9999999999999 5567999999999999
Q ss_pred ccccccccCCCCCHHHHHhhcc
Q 008488 526 SFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 526 ~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+ +|..+|+++|.
T Consensus 472 --------i--~d~~~l~~al~ 483 (519)
T TIGR03713 472 --------I--DDISELLKALD 483 (519)
T ss_pred --------e--CCHHHHHHHHH
Confidence 4 78888888874
No 107
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=99.07 E-value=2.7e-09 Score=119.19 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=189.3
Q ss_pred CCCEEEEEcCCCcchHHH-HHHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCccccc---c-c
Q 008488 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFKS---S-F 292 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~-~l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~~~~~---~-~ 292 (564)
.+. +||.||-|++++.. +++......+. .....++||.|.+-..+ .|+...+..+ +|..+.- . -
T Consensus 302 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~ 379 (798)
T PRK14985 302 DYE-VIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINT 379 (798)
T ss_pred CCc-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHH
Confidence 466 89999999987655 44433321111 12346899999875533 4444333322 1211110 0 0
Q ss_pred ccc----cCCC---------CCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCcc---CCCcchhhhhccceEEecCC
Q 008488 293 DFI----DGYN---------KPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGED---KGVELDNIIRKTGIKGIVNG 356 (564)
Q Consensus 293 ~~~----~~~~---------~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~---~g~~~~~~~~~~~i~~I~NG 356 (564)
.|. ..+. ..+.....++...++..|..|.-||+-..+.+.+.-. +.+- +.++.-+.||
T Consensus 380 ~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~------p~kf~nvTNG 453 (798)
T PRK14985 380 RFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLW------PNKFHNVTNG 453 (798)
T ss_pred HHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhC------CCccCCcCCC
Confidence 000 0000 0011113566667777888888888765544333111 1111 2367788999
Q ss_pred cccCCCC----CCCcc----ccc-------------ccc-Ccch----hhhccHHHHHHH----HHHhCCCCCCCccEEE
Q 008488 357 MDVQEWN----PLTDK----YIG-------------VKY-DAST----VMDAKPLLKEAL----QAEVGLPVDRNIPVIG 406 (564)
Q Consensus 357 id~~~~~----p~~~~----~~~-------------~~~-~~~~----~~~~~~~~~~~l----~~~~gl~~~~~~~~i~ 406 (564)
|....|- |.-.. +|. .++ +... +.+.|..+|..| +++.|...+++...++
T Consensus 454 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdv 533 (798)
T PRK14985 454 ITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDV 533 (798)
T ss_pred cCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchh
Confidence 9998884 32111 111 011 1122 244555555544 5677888888888999
Q ss_pred EEeccccccCHHH-HHHHHHhccc----C-----CeEEEEEeCCCh------hhHHHHHHHHHhC------CC--ceEEE
Q 008488 407 FIGRLEEQKGSDI-LAAAIPHFIK----E-----NVQIIVLGTGKK------PMEKQLEQLEILY------PE--KARGV 462 (564)
Q Consensus 407 ~iGrl~~~KG~d~-ll~A~~~l~~----~-----~v~lvIvG~g~~------~~~~~l~~L~~~~------~~--~v~~~ 462 (564)
++-|+.++|+..+ ++..+..+.+ + +.++|+.|...+ .+-+.+..++... .+ +|.|+
T Consensus 534 q~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 613 (798)
T PRK14985 534 QIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFL 613 (798)
T ss_pred hHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEe
Confidence 9999999999999 7666554433 2 478999997542 4455555555432 23 79999
Q ss_pred eccChHHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeecccc
Q 008488 463 AKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSV 529 (564)
Q Consensus 463 ~~~~~~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~ 529 (564)
..|+...+..++.+||+....|+. |++|++-+-+|..|.+.++|-.|.+.|+.++ ++|||.||.-..
T Consensus 614 enY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ 684 (798)
T PRK14985 614 PDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVE 684 (798)
T ss_pred CCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHH
Confidence 999999999999999999999984 9999999999999999999999999999986 789999985544
No 108
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.03 E-value=3.8e-09 Score=118.64 Aligned_cols=292 Identities=19% Similarity=0.215 Sum_probs=193.7
Q ss_pred CCCEEEEEcCCCcchHHH-HHHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCcccc-------
Q 008488 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFK------- 289 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~-~l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~~~~------- 289 (564)
.+. +||.||-|++++.. +++......+. .....++||.|.+...+ .|+...+..+ +|+.+.
T Consensus 300 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~ 377 (797)
T cd04300 300 DKV-AIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINR 377 (797)
T ss_pred Cce-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHH
Confidence 466 89999999887655 44433221111 12346899999875433 4443333322 122111
Q ss_pred -----------------cccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCc---cCCCcchhhhhccc
Q 008488 290 -----------------SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTG 349 (564)
Q Consensus 290 -----------------~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~ 349 (564)
..+..++.. .....++...++..|..|..||+-..+.+++.. .+.+- +.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~l~ii~~~----~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~------P~k 447 (797)
T cd04300 378 RFLEEVRAKYPGDEDRIRRMSIIEEG----GEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELY------PEK 447 (797)
T ss_pred HHHHHHHHhcCCCHHHHHhhcccccC----CCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhC------CCc
Confidence 000000100 012467777888899999999987766555420 11111 236
Q ss_pred eEEecCCcccCCCCCCCcc----ccccc------------------c-Cc---chhhhccHHHHHHH----HHHhCCCCC
Q 008488 350 IKGIVNGMDVQEWNPLTDK----YIGVK------------------Y-DA---STVMDAKPLLKEAL----QAEVGLPVD 399 (564)
Q Consensus 350 i~~I~NGid~~~~~p~~~~----~~~~~------------------~-~~---~~~~~~~~~~~~~l----~~~~gl~~~ 399 (564)
+.-+.|||....|--...+ .+... . |+ ..+.+.|..+|..| +++.|...+
T Consensus 448 f~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ld 527 (797)
T cd04300 448 FNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVD 527 (797)
T ss_pred cCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 7788999999887521111 11110 1 11 23445666666654 567898888
Q ss_pred CCccEEEEEeccccccCHHH-HHHHHHh---ccc-C-----CeEEEEEeCCC------hhhHHHHHHHHHh------CCC
Q 008488 400 RNIPVIGFIGRLEEQKGSDI-LAAAIPH---FIK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE 457 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~-ll~A~~~---l~~-~-----~v~lvIvG~g~------~~~~~~l~~L~~~------~~~ 457 (564)
++...++++-|+.++|+..+ ++..+.. +.+ + +.++++.|... +.+-+.+..++.. ..+
T Consensus 528 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 528 PDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCC
Confidence 88899999999999999999 6665444 433 2 37888989754 3455555555553 223
Q ss_pred --ceEEEeccChHHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeeccccc
Q 008488 458 --KARGVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVD 530 (564)
Q Consensus 458 --~v~~~~~~~~~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~~ 530 (564)
+|.|+..|+...+..++.+||+....|+. |++|++-+-+|..|.+.++|-.|...|+.++ ++|+|+||.-..+
T Consensus 608 ~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 686 (797)
T cd04300 608 KLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEE 686 (797)
T ss_pred ceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHH
Confidence 79999999999999999999999999984 9999999999999999999999999999987 8899999855443
No 109
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.95 E-value=1.6e-08 Score=112.07 Aligned_cols=295 Identities=18% Similarity=0.229 Sum_probs=166.5
Q ss_pred EEEEEcCCCcchHHH-HHHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCc----------ccc
Q 008488 230 VVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPA----------QFK 289 (564)
Q Consensus 230 vIih~h~~~~~~~~~-~l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~----------~~~ 289 (564)
++||.||-|++++.. .++......+. ....-++||.|.+-..+ +|+...+..+ +|. .+.
T Consensus 216 ~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~f~ 294 (713)
T PF00343_consen 216 VVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRRFL 294 (713)
T ss_dssp EEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHHHH
T ss_pred eEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHHHH
Confidence 499999999987655 44444333322 11235899999876544 4444333221 111 111
Q ss_pred cccc-----------cccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcc
Q 008488 290 SSFD-----------FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMD 358 (564)
Q Consensus 290 ~~~~-----------~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid 358 (564)
..+. .+.-.. .-.....++...++..|..|.-||+-..+.+++....... -+-+.++.-+.|||.
T Consensus 295 ~~~~~~~~~d~~~~~~l~ii~-~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~---~l~P~kf~nvTNGVh 370 (713)
T PF00343_consen 295 DELRRKYPGDEDQIRRLSIIE-EGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFY---ELWPEKFGNVTNGVH 370 (713)
T ss_dssp HHHHHHSTT-HHHHHHHSSEE-TSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHH---HHSGGGEEE----B-
T ss_pred HHHHHHhcCcchhhhhccccc-ccchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhh---hcCCceeeccccCcc
Confidence 0000 000000 0012356788888999999999999776665442111110 011237999999999
Q ss_pred cCCCCCCCcc--------cccccc--Ccchh----------------hhccHHHHH----HHHHHhCCCCCCCccEEEEE
Q 008488 359 VQEWNPLTDK--------YIGVKY--DASTV----------------MDAKPLLKE----ALQAEVGLPVDRNIPVIGFI 408 (564)
Q Consensus 359 ~~~~~p~~~~--------~~~~~~--~~~~~----------------~~~~~~~~~----~l~~~~gl~~~~~~~~i~~i 408 (564)
+..|-....+ +|...+ |++.+ .+.|..+|. .++++.|...+++...++++
T Consensus 371 ~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~ 450 (713)
T PF00343_consen 371 PRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQA 450 (713)
T ss_dssp TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEE
T ss_pred CcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhh
Confidence 9888532111 111111 11111 122333333 34667787777777889999
Q ss_pred eccccccCHHH-HH---HHHHhccc------CCeEEEEEeCCCh------hhHHHHHHHHH---hCC---C--ceEEEec
Q 008488 409 GRLEEQKGSDI-LA---AAIPHFIK------ENVQIIVLGTGKK------PMEKQLEQLEI---LYP---E--KARGVAK 464 (564)
Q Consensus 409 Grl~~~KG~d~-ll---~A~~~l~~------~~v~lvIvG~g~~------~~~~~l~~L~~---~~~---~--~v~~~~~ 464 (564)
-|+.++|+..+ ++ +-+.++++ .++++|+.|...+ ++-+.+.+++. ..+ + +|.|+..
T Consensus 451 rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlen 530 (713)
T PF00343_consen 451 RRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLEN 530 (713)
T ss_dssp S-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT
T ss_pred hhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecC
Confidence 99999999888 33 34444443 2588999997653 34445555543 122 3 7899999
Q ss_pred cChHHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeecccc
Q 008488 465 FNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSV 529 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~ 529 (564)
|+...+..++.++|+.+..|+. |++|++-+-+|..|.+.+++-.|...|+.++ .++.|+||.-..
T Consensus 531 YdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ 599 (713)
T PF00343_consen 531 YDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAE 599 (713)
T ss_dssp -SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHH
T ss_pred CcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHH
Confidence 9999999999999999999984 9999999999999999999999999999864 468999984433
No 110
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.95 E-value=2.4e-09 Score=119.81 Aligned_cols=296 Identities=20% Similarity=0.248 Sum_probs=193.0
Q ss_pred CCCEEEEEcCCCcchHHH-HHHhhccCCCC-------CCCCeEEEEEccCCcCc--cccccccccCCCCccccc--cc--
Q 008488 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFKS--SF-- 292 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~-~l~~~~~~~~~-------~~~~kvv~tiH~~~~~~--~~~~~~~~~~~l~~~~~~--~~-- 292 (564)
.+. +||.||-|++++.. +++......+. .....++||.|.+...+ .|+...+..+ +|..+.- ..
T Consensus 297 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~-Lpr~~~iI~~In~ 374 (794)
T TIGR02093 297 KKV-AIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKL-LPRHLEIIYEINR 374 (794)
T ss_pred cce-EEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHH-HhHHHHHHHHHhH
Confidence 456 89999999987655 44433221111 12346889999875433 4444433321 1211110 00
Q ss_pred cccc----CCC---------CCc---cCchhHHHHHHHHhcceeccCCHHHHHHHHcCc---cCCCcchhhhhccceEEe
Q 008488 293 DFID----GYN---------KPV---RGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGI 353 (564)
Q Consensus 293 ~~~~----~~~---------~~~---~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~~I 353 (564)
.|.. .+. ..+ .....++...++..|..|..||+-..+.+++.. .+.+- +.++.-+
T Consensus 375 ~fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~------P~kf~n~ 448 (794)
T TIGR02093 375 RFLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELY------PEKFNNK 448 (794)
T ss_pred HHHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhC------CCccCCc
Confidence 0000 000 000 012467777888899999999987766555310 11121 2367778
Q ss_pred cCCcccCCCCCCCcc----ccccc-----------------c-Cc----chhhhccHHHHHHH----HHHhCCCCCCCcc
Q 008488 354 VNGMDVQEWNPLTDK----YIGVK-----------------Y-DA----STVMDAKPLLKEAL----QAEVGLPVDRNIP 403 (564)
Q Consensus 354 ~NGid~~~~~p~~~~----~~~~~-----------------~-~~----~~~~~~~~~~~~~l----~~~~gl~~~~~~~ 403 (564)
.|||.+..|--...+ .+... + +. ..+.+.|..+|..| +++.|...+++..
T Consensus 449 TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~sl 528 (794)
T TIGR02093 449 TNGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSI 528 (794)
T ss_pred CCCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcccc
Confidence 999999888522111 11111 1 11 23445555666554 5677888888888
Q ss_pred EEEEEeccccccCHHH-HHHHHHhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHHh------CCC--ce
Q 008488 404 VIGFIGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE--KA 459 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~-ll~A~~~l---~~-~-----~v~lvIvG~g~------~~~~~~l~~L~~~------~~~--~v 459 (564)
..+++-|+.++|+..+ ++..+..+ .+ + +.++++.|... +.+-+.+..++.. ..+ +|
T Consensus 529 fdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkV 608 (794)
T TIGR02093 529 FDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKV 608 (794)
T ss_pred chhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeE
Confidence 9999999999999999 66665444 33 2 56899999754 2455555555533 223 79
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeeccccc
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVD 530 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~~ 530 (564)
.|+..|+...+..++.+||+....|+. |++|++-+-+|..|.+.++|-.|...|+.++ ++|+|+||.-..+
T Consensus 609 VFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 683 (794)
T TIGR02093 609 VFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEE 683 (794)
T ss_pred EEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHH
Confidence 999999999999999999999999984 9999999999999999999999999999987 8899999855443
No 111
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.93 E-value=9.5e-09 Score=110.37 Aligned_cols=168 Identities=7% Similarity=-0.015 Sum_probs=126.6
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHh
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (564)
.+.|.||+.++...+.+..+... ..++.++|-|+=.. + +..
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~---------~~~~~~ip~g~i~~-~-~~~---------------------------- 278 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDN---------EYQEQISQLGYLYP-F-KKD---------------------------- 278 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCc---------ccCceEEEEEEEEe-e-ccc----------------------------
Confidence 57889999998877777753211 12555566555321 1 111
Q ss_pred CCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHH
Q 008488 395 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (564)
Q Consensus 395 gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~ 472 (564)
++...-+++++. +..+++++.+.+ |+++|.| |.+.+ +...|.+| .++ .+++.+..+....+.+
T Consensus 279 ----~r~~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 279 ----NKYRKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred ----cCCcccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHH
Confidence 122345666662 888999998876 8999999 76653 56788888 677 5688888888777788
Q ss_pred HHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 473 il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
++..||+++-+|..|++++++.||+..|+|+++.+. -|..+++.+ |.+ ++.+|+++|+++|.+.
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l----------~~~~~~~~m~~~i~~l 408 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENI----------FEHNEVDQLISKLKDL 408 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---Cce----------ecCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999985 456677776 777 6899999999988654
No 112
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.93 E-value=7.1e-07 Score=93.89 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHHHhCCCCCCCccEEEEE-eccccccCH-HHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc
Q 008488 388 EALQAEVGLPVDRNIPVIGFI-GRLEEQKGS-DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF 465 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~i-Grl~~~KG~-d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~ 465 (564)
++.++.++++.+ .++|+.+ |... .+.+ +.+.+++..+. .+++++++ .|+..+++.++. +. ++.. ..|
T Consensus 173 ~~~~~~~~l~~~--~~~iLv~GGS~G-a~~in~~~~~~l~~l~-~~~~vv~~-~G~~~~~~~~~~----~~-~~~~-~~f 241 (352)
T PRK12446 173 EKGLAFLGFSRK--KPVITIMGGSLG-AKKINETVREALPELL-LKYQIVHL-CGKGNLDDSLQN----KE-GYRQ-FEY 241 (352)
T ss_pred hHHHHhcCCCCC--CcEEEEECCccc-hHHHHHHHHHHHHhhc-cCcEEEEE-eCCchHHHHHhh----cC-CcEE-ecc
Confidence 445667787643 3555544 5554 3444 44444555553 34776654 222224443332 12 2222 244
Q ss_pred ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
-.+.++.+|+.||++|. =+-++++.|++++|+|.|.-.
T Consensus 242 ~~~~m~~~~~~adlvIs----r~G~~t~~E~~~~g~P~I~iP 279 (352)
T PRK12446 242 VHGELPDILAITDFVIS----RAGSNAIFEFLTLQKPMLLIP 279 (352)
T ss_pred hhhhHHHHHHhCCEEEE----CCChhHHHHHHHcCCCEEEEc
Confidence 44556779999999985 356788999999999999874
No 113
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.89 E-value=6.2e-08 Score=91.52 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=113.0
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|++--.| ..-||.++.+.+|+..|+++||+|+|.+........ ....+|++++
T Consensus 3 kIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~----------------------~~~y~gv~l~ 59 (185)
T PF09314_consen 3 KIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK----------------------EFEYNGVRLV 59 (185)
T ss_pred eEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC----------------------CcccCCeEEE
Confidence 79999999888 688999999999999999999999999976321111 1123688888
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCC-cchHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~-~~~~~~ 244 (564)
.++.|..-. ...+..-..++..+++....+ +.+.| |++.+... .+++..
T Consensus 60 ~i~~~~~g~----------------------~~si~yd~~sl~~al~~~~~~-------~~~~~-ii~ilg~~~g~~~~~ 109 (185)
T PF09314_consen 60 YIPAPKNGS----------------------AESIIYDFLSLLHALRFIKQD-------KIKYD-IILILGYGIGPFFLP 109 (185)
T ss_pred EeCCCCCCc----------------------hHHHHHHHHHHHHHHHHHhhc-------cccCC-EEEEEcCCccHHHHH
Confidence 876552210 011111222333333211100 12478 77877665 344433
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
+++...+ .+.|+++.+|+++++. .+|.. +.......-++.+.+.+|.+|+.|
T Consensus 110 ~~r~~~~-----~g~~v~vN~DGlEWkR-------------~KW~~----------~~k~~lk~~E~~avk~ad~lIaDs 161 (185)
T PF09314_consen 110 FLRKLRK-----KGGKVVVNMDGLEWKR-------------AKWGR----------PAKKYLKFSEKLAVKYADRLIADS 161 (185)
T ss_pred HHHhhhh-----cCCcEEECCCcchhhh-------------hhcCH----------HHHHHHHHHHHHHHHhCCEEEEcC
Confidence 4443321 3679999999777522 11110 111111223556788999999999
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEecCCcc
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMD 358 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid 358 (564)
+..++.+.+ .|+ ..+.+.|++|.|
T Consensus 162 ~~I~~y~~~--~y~--------~~~s~~IaYGad 185 (185)
T PF09314_consen 162 KGIQDYIKE--RYG--------RKKSTFIAYGAD 185 (185)
T ss_pred HHHHHHHHH--HcC--------CCCcEEecCCCC
Confidence 999999998 344 127889999976
No 114
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=2.3e-09 Score=110.03 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=159.3
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccc-cccccccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF-AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
+-||-|.|+|..+..-++.+.+. ..+-+|||.|..-. |++ +.+..+.-|--+. |+--....+.--...
T Consensus 174 ~~vVahFHEW~AGVgL~l~R~rr------l~iaTifTTHATLL-GRyLCA~~~DfYNnLd~----f~vD~EAGkr~IYHr 242 (692)
T KOG3742|consen 174 TAVVAHFHEWQAGVGLILCRARR------LDIATIFTTHATLL-GRYLCAGNVDFYNNLDS----FDVDKEAGKRQIYHR 242 (692)
T ss_pred hHHHHHHHHHHhccchheehhcc------cceEEEeehhHHHH-HHHHhcccchhhhchhh----cccchhhccchhHHH
Confidence 35577899998775544444432 47889999996433 222 2111111111111 111011111111234
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+++++...|+...|||+-++-+.. .+++.++-.+.|||.++..|.....- ..+.+-...+.....
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAe----------HlLkRKPD~itPNGLNV~KFsA~HEF---QNLHA~~KekIndFV 309 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAE----------HLLKRKPDVITPNGLNVKKFSAVHEF---QNLHAQKKEKINDFV 309 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHH----------HHHhcCCCeeCCCCcceeehhHHHHH---HHHHHHHHHHHHHHh
Confidence 67788888889999999997765544 33445566788999999877644310 000000000111111
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccc-cccCHHHHHHHHHhccc------CC---eEEEEEeCCC-----h-----hhHH
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFIK------EN---VQIIVLGTGK-----K-----PMEK 446 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~-~~KG~d~ll~A~~~l~~------~~---v~lvIvG~g~-----~-----~~~~ 446 (564)
+.-+.-.+....| +..++...||++ ..||-|.+|++++.|.. .+ +-|+|.-... + ...+
T Consensus 310 RGHF~GhlDFdLd-kTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~k 388 (692)
T KOG3742|consen 310 RGHFHGHLDFDLD-KTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRK 388 (692)
T ss_pred hhhcccccccccc-ceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHH
Confidence 2222222333333 456788899998 69999999999998843 11 3344432210 0 0111
Q ss_pred HHHHHH----H---------------------------------------------------------------------
Q 008488 447 QLEQLE----I--------------------------------------------------------------------- 453 (564)
Q Consensus 447 ~l~~L~----~--------------------------------------------------------------------- 453 (564)
++.+.. +
T Consensus 389 qL~dtv~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN 468 (692)
T KOG3742|consen 389 QLWDTVNEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFN 468 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhccc
Confidence 110000 0
Q ss_pred --hCCCceEEEecc---C----hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccc----ccccccCcc
Q 008488 454 --LYPEKARGVAKF---N----IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVEEGFT 520 (564)
Q Consensus 454 --~~~~~v~~~~~~---~----~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e~v~~g~~ 520 (564)
....+++++..| + .-+..+..++|.+.|+||++||+|.+..|.--+|+|.|+|+..|+ .|.|.+...
T Consensus 469 ~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~a 548 (692)
T KOG3742|consen 469 SPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQA 548 (692)
T ss_pred CcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchh
Confidence 001244455444 1 112345889999999999999999999999999999999998774 455554332
Q ss_pred -eeEeeccccccccCCCC-CHHHHHhhcc
Q 008488 521 -GFQMGSFSVDVIYSSPS-YNSRVIPRIP 547 (564)
Q Consensus 521 -G~l~~~~~~~~~~v~~~-d~~aLa~aI~ 547 (564)
|+. -++-....|+ .++.|++-|.
T Consensus 549 yGIY----IvDRRfks~deSv~qL~~~m~ 573 (692)
T KOG3742|consen 549 YGIY----IVDRRFKSPDESVQQLASFMY 573 (692)
T ss_pred ceEE----EEecccCChhhHHHHHHHHHH
Confidence 443 3333333333 3566666553
No 115
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.61 E-value=6.5e-06 Score=84.98 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=80.9
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
...+++++|..... .++++++++ ++.+++++|.... .....++. +..+..+...++|+.||++
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~--~~~~~~v~g~~~~----------~~~~~ni~-~~~~~~~~~~~~m~~ad~v 254 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKAL--PDYQFIVFGPNAA----------DPRPGNIH-VRPFSTPDFAELMAAADLV 254 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhC--CCCeEEEEcCCcc----------cccCCCEE-EeecChHHHHHHHHhCCEE
Confidence 44689999998666 677888876 5788999976531 01134566 5556656677899999999
Q ss_pred EEcCCCCCCcHH-HHHHHHcCCcEEEcCccccccc------cccCcceeEeeccccccccCC--CCCHHHHHhhccc
Q 008488 481 LIPSRFEPCGLI-QLHAMRYGTVPIVASTGGLVDT------VEEGFTGFQMGSFSVDVIYSS--PSYNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~-~lEAma~G~PvI~s~~gg~~e~------v~~g~~G~l~~~~~~~~~~v~--~~d~~aLa~aI~~ 548 (564)
|. ..|.. +.||+++|+|+|+-...+..|. +++-+.|.. ++ .-+++.|++.|++
T Consensus 255 Is-----~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~----------~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 255 IS-----KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIV----------LSQEDLTPERLAEFLER 316 (318)
T ss_pred EE-----CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEE----------cccccCCHHHHHHHHhc
Confidence 96 35555 9999999999999887664443 333344443 33 3367888888765
No 116
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.59 E-value=5.2e-06 Score=86.13 Aligned_cols=294 Identities=16% Similarity=0.154 Sum_probs=161.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++=... +| .-.....+..+|.++||+|.+.+..++...+..+ .-|++.
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~----------------------~yg~~y 51 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDETEELLD----------------------LYGIDY 51 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH----------------------HcCCCe
Confidence 888887654 33 3557888999999999999999998775554322 124555
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
..+... |..+ ..++........++.+.+. +++|| |+.++....+ +.
T Consensus 52 ~~iG~~----------g~~~------------~~Kl~~~~~R~~~l~~~~~---------~~~pD-v~is~~s~~a--~~ 97 (335)
T PF04007_consen 52 IVIGKH----------GDSL------------YGKLLESIERQYKLLKLIK---------KFKPD-VAISFGSPEA--AR 97 (335)
T ss_pred EEEcCC----------CCCH------------HHHHHHHHHHHHHHHHHHH---------hhCCC-EEEecCcHHH--HH
Confidence 544321 1111 1222333344444444443 24699 5555432212 11
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
. ... .++|.|....+-.. . .-.+..+-.||.+++++
T Consensus 98 v-a~~-------lgiP~I~f~D~e~a----------------~--------------------~~~~Lt~Pla~~i~~P~ 133 (335)
T PF04007_consen 98 V-AFG-------LGIPSIVFNDTEHA----------------I--------------------AQNRLTLPLADVIITPE 133 (335)
T ss_pred H-HHH-------hCCCeEEEecCchh----------------h--------------------ccceeehhcCCeeECCc
Confidence 1 111 37888887763110 0 00111234688888887
Q ss_pred HHHHHHHHcCccCCCcchhhhhccceEEe-cCCcccCC----CCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 008488 325 PHYAQELVSGEDKGVELDNIIRKTGIKGI-VNGMDVQE----WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (564)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~~I-~NGid~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (564)
-.-...+.. +|.. + .+. +||++.-. |.| ..++.+++|++.
T Consensus 134 ~~~~~~~~~---~G~~-~--------~i~~y~G~~E~ayl~~F~P----------------------d~~vl~~lg~~~- 178 (335)
T PF04007_consen 134 AIPKEFLKR---FGAK-N--------QIRTYNGYKELAYLHPFKP----------------------DPEVLKELGLDD- 178 (335)
T ss_pred ccCHHHHHh---cCCc-C--------CEEEECCeeeEEeecCCCC----------------------ChhHHHHcCCCC-
Confidence 654444443 4432 1 234 77776533 344 346678999752
Q ss_pred CCccEEEEEecccccc-----C-HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHH
Q 008488 400 RNIPVIGFIGRLEEQK-----G-SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~K-----G-~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~i 473 (564)
.++|+. |.++.+ | ...+-+.++++.+..-.+|++-...+ + .++.++++ +. +.. ..-+.+.+
T Consensus 179 --~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~----~-~~~~~~~~--~~-i~~-~~vd~~~L 245 (335)
T PF04007_consen 179 --EPYIVV--RPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED----Q-RELFEKYG--VI-IPP-EPVDGLDL 245 (335)
T ss_pred --CCEEEE--EeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc----h-hhHHhccC--cc-ccC-CCCCHHHH
Confidence 255543 444433 2 23344566666553322666654432 1 12223333 21 111 11133469
Q ss_pred HHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc---ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 474 l~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
+..||++|- +-|+-..||...|+|.|++..| +..+.+.+ .|++ .--.|++++.+.+....
T Consensus 246 l~~a~l~Ig-----~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gll----------~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 246 LYYADLVIG-----GGGTMAREAALLGTPAISCFPGKLLAVDKYLIE--KGLL----------YHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHhcCEEEe-----CCcHHHHHHHHhCCCEEEecCCcchhHHHHHHH--CCCe----------EecCCHHHHHHHHHHhh
Confidence 999999994 5678899999999999998654 33344433 4666 45677778777554433
No 117
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=3.6e-05 Score=80.80 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=65.9
Q ss_pred ccE-EEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 402 IPV-IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 402 ~~~-i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.++ +++-|...-.+=-+.+.++...+.+ +++++...+... +++..+.+.. +. +..+..|..+ +..+|+.||++
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-~~~~~~~~~~-~~--~~~v~~f~~d-m~~~~~~ADLv 256 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-LEELKSAYNE-LG--VVRVLPFIDD-MAALLAAADLV 256 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-HHHHHHHHhh-cC--cEEEeeHHhh-HHHHHHhccEE
Confidence 344 4555556555544555555556533 677666554332 3333333332 22 2334445444 55699999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCccc--------cccccccCcceeEe
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQM 524 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~l~ 524 (564)
|. =+-++++-|..++|+|.|--..+. .+..+++.+.|..+
T Consensus 257 Is----RaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i 304 (357)
T COG0707 257 IS----RAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVI 304 (357)
T ss_pred Ee----CCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEe
Confidence 95 356799999999999988765433 33344555556653
No 118
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.52 E-value=1.5e-05 Score=84.27 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=115.0
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecC-CcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN-GMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~N-Gid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
+-|+..++.++..++.+.+ -|++.. +|.++-| ++|.-.+.... .++.+.++
T Consensus 143 ~la~l~f~~t~~~~~~L~~---eg~~~~------~i~~tG~~~iD~l~~~~~~-------------------~~~~~~~~ 194 (365)
T TIGR03568 143 KLSHLHFVATEEYRQRVIQ---MGEDPD------RVFNVGSPGLDNILSLDLL-------------------SKEELEEK 194 (365)
T ss_pred HHHhhccCCCHHHHHHHHH---cCCCCC------cEEEECCcHHHHHHhhhcc-------------------CHHHHHHH
Confidence 4578888999999988875 455433 5655544 45533221111 14567788
Q ss_pred hCCCCCCCccEEEEEeccc-----cccCHHHHHHHHHhcccCCeEEEEE-e-CCChhhHHHHHHHHHhCCCceEEEeccC
Q 008488 394 VGLPVDRNIPVIGFIGRLE-----EQKGSDILAAAIPHFIKENVQIIVL-G-TGKKPMEKQLEQLEILYPEKARGVAKFN 466 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~-----~~KG~d~ll~A~~~l~~~~v~lvIv-G-~g~~~~~~~l~~L~~~~~~~v~~~~~~~ 466 (564)
+|++.+ ...+++.+-+-. ..+.+..+++++.++ ..++.++.- + .+.+...+.++++... ..++.+....+
T Consensus 195 lgl~~~-~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~-~~~~~vi~P~~~p~~~~i~~~i~~~~~~-~~~v~l~~~l~ 271 (365)
T TIGR03568 195 LGIDLD-KPYALVTFHPVTLEKESAEEQIKELLKALDEL-NKNYIFTYPNADAGSRIINEAIEEYVNE-HPNFRLFKSLG 271 (365)
T ss_pred hCCCCC-CCEEEEEeCCCcccccCchHHHHHHHHHHHHh-ccCCEEEEeCCCCCchHHHHHHHHHhcC-CCCEEEECCCC
Confidence 888533 223344454432 233455666666554 224422221 2 2223456666666432 24688888888
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
..+...+++.||++|-- ..|.. .||.++|+|+|+ .|.-+|.++.|.+.++ | +.|++++.+++
T Consensus 272 ~~~~l~Ll~~a~~vitd----SSggi-~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~----------v-g~~~~~I~~a~ 333 (365)
T TIGR03568 272 QERYLSLLKNADAVIGN----SSSGI-IEAPSFGVPTIN--IGTRQKGRLRADSVID----------V-DPDKEEIVKAI 333 (365)
T ss_pred hHHHHHHHHhCCEEEEc----ChhHH-HhhhhcCCCEEe--ecCCchhhhhcCeEEE----------e-CCCHHHHHHHH
Confidence 88888899999999943 22333 899999999995 4578898888888876 4 45677777766
Q ss_pred cc
Q 008488 547 PL 548 (564)
Q Consensus 547 ~~ 548 (564)
..
T Consensus 334 ~~ 335 (365)
T TIGR03568 334 EK 335 (365)
T ss_pred HH
Confidence 55
No 119
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.45 E-value=9.9e-05 Score=75.12 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=69.9
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeE-EEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQ-IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~-lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
.++++.|...+.+....+++++.++. .+++ .+|+|.+.+ ..+.++++....+ ++..+ . ..+.+..+|+.||++|
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~~-~-~~~~m~~lm~~aDl~I 246 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP-NLDELKKFAKEYP-NIILF-I-DVENMAELMNEADLAI 246 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc-CHHHHHHHHHhCC-CEEEE-e-CHHHHHHHHHHCCEEE
Confidence 47899998888887888899998763 3444 336777654 3455666655544 45533 2 3445667999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
.+ .|.++.|++++|+|+|+-..
T Consensus 247 s~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 247 GA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EC-----CchHHHHHHHcCCCEEEEEe
Confidence 83 77999999999999998754
No 120
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.40 E-value=3.8e-06 Score=75.58 Aligned_cols=138 Identities=20% Similarity=0.298 Sum_probs=81.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeEE
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (564)
||++|+... +.++.+++.+|.++||+|.+++++.+. .. ....+|+.++
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~----------------------~~~~~~i~~~ 48 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDY-EK----------------------YEIIEGIKVI 48 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCc-hh----------------------hhHhCCeEEE
Confidence 789999752 236889999999999999999996432 11 0113466666
Q ss_pred EEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCc-chHHH
Q 008488 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT-SLIPC 244 (564)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~-~~~~~ 244 (564)
.++.+. . . ...+ + . +.++.+.+.. .+|| |||+|...+ ++++.
T Consensus 49 ~~~~~~--k------------------~---~~~~--~-~-~~~l~k~ik~---------~~~D-vIh~h~~~~~~~~~~ 91 (139)
T PF13477_consen 49 RLPSPR--K------------------S---PLNY--I-K-YFRLRKIIKK---------EKPD-VIHCHTPSPYGLFAM 91 (139)
T ss_pred EecCCC--C------------------c---cHHH--H-H-HHHHHHHhcc---------CCCC-EEEEecCChHHHHHH
Confidence 664221 0 0 0111 1 1 2223232322 2699 999998776 56666
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCC
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 324 (564)
++++.. ...|++++.|+...-. .+.. ......+++..++.+|.+++.|
T Consensus 92 l~~~~~------~~~~~i~~~hg~~~~~-----------~~~~---------------~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 92 LAKKLL------KNKKVIYTVHGSDFYN-----------SSKK---------------KKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred HHHHHc------CCCCEEEEecCCeeec-----------CCch---------------HHHHHHHHHHHHHhCCEEEEcC
Confidence 665553 2389999999543200 0000 0012346777889999999876
No 121
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.37 E-value=5.7e-05 Score=80.64 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=75.9
Q ss_pred CccEEEEEecccc---ccCHHHHHHHHHhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh
Q 008488 401 NIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (564)
Q Consensus 401 ~~~~i~~iGrl~~---~KG~d~ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ 476 (564)
..++++..|+... .+-...+++++..+ +.+++ .+|..... . ...++++......+.. .++..
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~~--~------~~~~~~v~~~~~~p~~---~ll~~ 304 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLG--A------EDLPDNVRVVDFVPHD---WLLPR 304 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCcccc--c------cCCCCceEEeCCCCHH---HHhhh
Confidence 3467788888743 45566677777765 55644 45544311 1 2334567766555533 47999
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
||++|. -+-..++.||+++|+|+|+....+ ..+.+.+.+.|.. +++. +.+.+++++.+
T Consensus 305 ~d~~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~----------l~~~~~~~~~l~~al~~ 368 (401)
T cd03784 305 CAAVVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPA----------LDPRELTAERLAAALRR 368 (401)
T ss_pred hheeee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCC----------CCcccCCHHHHHHHHHH
Confidence 999994 334588999999999999986654 3445556566765 2332 56666666543
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=2.6e-05 Score=80.70 Aligned_cols=227 Identities=16% Similarity=0.089 Sum_probs=138.3
Q ss_pred CcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCc--chHHHHHHhhccCCCCCCCCeEEEEEccCCc
Q 008488 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT--SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAY 270 (564)
Q Consensus 193 ~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~--~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~ 270 (564)
+.+...++..+.+...+..+.+..+ +||+ +.+=|... ..+.-.+++.. +++|+|+.+-...
T Consensus 60 f~EVL~~lp~llk~~~~~~~~i~~~---------kpD~-~i~IDsPdFnl~vak~lrk~~------p~i~iihYV~PsV- 122 (381)
T COG0763 60 FVEVLGRLPRLLKIRRELVRYILAN---------KPDV-LILIDSPDFNLRVAKKLRKAG------PKIKIIHYVSPSV- 122 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---------CCCE-EEEeCCCCCchHHHHHHHHhC------CCCCeEEEECcce-
Confidence 4455555555555555565554322 6995 44445432 33444444432 5688887665221
Q ss_pred CccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccce
Q 008488 271 QGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI 350 (564)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i 350 (564)
|. ++........+.+|+++++=|.-.+.+.+ +|. +.
T Consensus 123 --------WA------------------------Wr~~Ra~~i~~~~D~lLailPFE~~~y~k---~g~---------~~ 158 (381)
T COG0763 123 --------WA------------------------WRPKRAVKIAKYVDHLLAILPFEPAFYDK---FGL---------PC 158 (381)
T ss_pred --------ee------------------------echhhHHHHHHHhhHeeeecCCCHHHHHh---cCC---------Ce
Confidence 11 11122344567899999999999988886 444 33
Q ss_pred EEecCCcccCC-CCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEec-ccc-ccCHHHHHHHHHhc
Q 008488 351 KGIVNGMDVQE-WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIPHF 427 (564)
Q Consensus 351 ~~I~NGid~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGr-l~~-~KG~d~ll~A~~~l 427 (564)
+.|-|.+-.+. +.+ ++++.|+++|++.+. ..+.+..|+ -.+ .+-...+++|+.++
T Consensus 159 ~yVGHpl~d~i~~~~---------------------~r~~ar~~l~~~~~~-~~lalLPGSR~sEI~rl~~~f~~a~~~l 216 (381)
T COG0763 159 TYVGHPLADEIPLLP---------------------DREAAREKLGIDADE-KTLALLPGSRRSEIRRLLPPFVQAAQEL 216 (381)
T ss_pred EEeCChhhhhccccc---------------------cHHHHHHHhCCCCCC-CeEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 44444432211 111 267799999998654 345566665 344 66788899999999
Q ss_pred cc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEE
Q 008488 428 IK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV 505 (564)
Q Consensus 428 ~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~ 505 (564)
.+ ++.++++--.... ++...++.... +. ........+...++.+.+||+-+. .+|++.||+|.+|+|.|+
T Consensus 217 ~~~~~~~~~vlp~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~a~~~aD~al~-----aSGT~tLE~aL~g~P~Vv 288 (381)
T COG0763 217 KARYPDLKFVLPLVNAK-YRRIIEEALKW-EV-AGLSLILIDGEKRKAFAAADAALA-----ASGTATLEAALAGTPMVV 288 (381)
T ss_pred HhhCCCceEEEecCcHH-HHHHHHHHhhc-cc-cCceEEecCchHHHHHHHhhHHHH-----hccHHHHHHHHhCCCEEE
Confidence 75 7899988665442 33333333322 21 112333355566779999999986 579999999999999887
Q ss_pred c-Cccc
Q 008488 506 A-STGG 510 (564)
Q Consensus 506 s-~~gg 510 (564)
+ ....
T Consensus 289 ~Yk~~~ 294 (381)
T COG0763 289 AYKVKP 294 (381)
T ss_pred EEeccH
Confidence 6 4444
No 123
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.08 E-value=0.00032 Score=73.65 Aligned_cols=238 Identities=15% Similarity=0.108 Sum_probs=130.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCch
Q 008488 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
+||+|+..-|-.+++..+..... .++| |.++|+- .... +.+ . +..
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~-------~~ip-v~HieaG----lRs~-d~~---------------~-------g~~ 111 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFY-------LNIP-VAHIEAG----LRSG-DRT---------------E-------GMP 111 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHH-------TT-E-EEEES---------S--TT---------------S-------STT
T ss_pred CCCEEEEEcCCchHHHHHHHHHH-------hCCC-EEEecCC----CCcc-ccC---------------C-------CCc
Confidence 59976666677777777766665 4889 5666632 1000 000 0 111
Q ss_pred hHHHHHHH-HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCC-cccCCCCCCCccccccccCcchhhhccH
Q 008488 307 INWMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (564)
Q Consensus 307 ~~~~k~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NG-id~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (564)
....|..+ +-||..++.++..++.+.+ -|++++ +|.++=|- +|.-.
T Consensus 112 de~~R~~i~~la~lhf~~t~~~~~~L~~---~G~~~~------rI~~vG~~~~D~l~----------------------- 159 (346)
T PF02350_consen 112 DEINRHAIDKLAHLHFAPTEEARERLLQ---EGEPPE------RIFVVGNPGIDALL----------------------- 159 (346)
T ss_dssp HHHHHHHHHHH-SEEEESSHHHHHHHHH---TT--GG------GEEE---HHHHHHH-----------------------
T ss_pred hhhhhhhhhhhhhhhccCCHHHHHHHHh---cCCCCC------eEEEEChHHHHHHH-----------------------
Confidence 23344444 4699999999999999997 687765 67666542 23210
Q ss_pred HHHHHHHHH---hCC--CCCCCccEEEEEecccc---ccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhC
Q 008488 385 LLKEALQAE---VGL--PVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILY 455 (564)
Q Consensus 385 ~~~~~l~~~---~gl--~~~~~~~~i~~iGrl~~---~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~ 455 (564)
..+.....+ .++ . ..+..+++..-|.+. ......+.++++.+.+ .++++++.....+.....+.+...++
T Consensus 160 ~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~ 238 (346)
T PF02350_consen 160 QNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY 238 (346)
T ss_dssp HHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-
T ss_pred HhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc
Confidence 011111100 011 1 123345555555432 3456778888887766 58999998876666667776666666
Q ss_pred CCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCcceeEeeccccccccC
Q 008488 456 PEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDVIYS 534 (564)
Q Consensus 456 ~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~l~~~~~~~~~~v 534 (564)
.++..+..........+++.|+++|- ..|.++-||..+|+|+|.-+ .|--.|.+..+.+-+ +
T Consensus 239 -~~v~~~~~l~~~~~l~ll~~a~~vvg-----dSsGI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-----------v 301 (346)
T PF02350_consen 239 -DNVRLIEPLGYEEYLSLLKNADLVVG-----DSSGIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-----------V 301 (346)
T ss_dssp -TTEEEE----HHHHHHHHHHESEEEE-----SSHHHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-----------E
T ss_pred -CCEEEECCCCHHHHHHHHhcceEEEE-----cCccHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-----------e
Confidence 47999999988888889999999985 45544449999999999994 466666666554433 2
Q ss_pred CCCCHHHHHhhcccCC
Q 008488 535 SPSYNSRVIPRIPLDS 550 (564)
Q Consensus 535 ~~~d~~aLa~aI~~~~ 550 (564)
. .|.+++.++|....
T Consensus 302 ~-~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 302 G-TDPEAIIQAIEKAL 316 (346)
T ss_dssp T-SSHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHH
Confidence 3 56777766665443
No 124
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.02 E-value=0.00071 Score=71.31 Aligned_cols=159 Identities=21% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHH
Q 008488 310 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 389 (564)
Q Consensus 310 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (564)
.+..-+.+|.++++=|...+.+.+ .|+ +++.+-|.+- +...+... +..
T Consensus 127 ~~~i~~~~D~ll~ifPFE~~~y~~---~g~---------~~~~VGHPl~-d~~~~~~~-------------------~~~ 174 (373)
T PF02684_consen 127 AKKIKKYVDHLLVIFPFEPEFYKK---HGV---------PVTYVGHPLL-DEVKPEPD-------------------RAE 174 (373)
T ss_pred HHHHHHHHhheeECCcccHHHHhc---cCC---------CeEEECCcch-hhhccCCC-------------------HHH
Confidence 344456789999999999988886 454 4455555431 11222111 345
Q ss_pred HHHHhCCCCCCCccEEEEEec-ccc-ccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc
Q 008488 390 LQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF 465 (564)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGr-l~~-~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~ 465 (564)
.++.+ ++.+. ..+.+..|+ -.+ .+.+..++++++++.+ +++++++..... ...+.+++.....+.++....
T Consensus 175 ~~~~~-l~~~~-~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~-~~~~~i~~~~~~~~~~~~~~~-- 249 (373)
T PF02684_consen 175 AREKL-LDPDK-PIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE-VHEELIEEILAEYPPDVSIVI-- 249 (373)
T ss_pred HHHhc-CCCCC-cEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH-HHHHHHHHHHHhhCCCCeEEE--
Confidence 56666 65433 234455554 444 5566999999999977 789998876543 344556555554443333222
Q ss_pred ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Cccc
Q 008488 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGG 510 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg 510 (564)
........|++||+.+. ..|++-||++.+|+|.|+. ..+.
T Consensus 250 ~~~~~~~~m~~ad~al~-----~SGTaTLE~Al~g~P~Vv~Yk~~~ 290 (373)
T PF02684_consen 250 IEGESYDAMAAADAALA-----ASGTATLEAALLGVPMVVAYKVSP 290 (373)
T ss_pred cCCchHHHHHhCcchhh-----cCCHHHHHHHHhCCCEEEEEcCcH
Confidence 22334568999999997 4699999999999997765 4443
No 125
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.99 E-value=0.00085 Score=74.05 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=98.0
Q ss_pred HHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHHHHH
Q 008488 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 389 (564)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (564)
+..-+..|+++|.=|...+.+.+ .|+ +++.+-|.. |. ..+..+ +++
T Consensus 356 kki~k~vD~ll~IfPFE~~~y~~---~gv---------~v~yVGHPL~d~--i~~~~~-------------------~~~ 402 (608)
T PRK01021 356 TILEKYLDLLLLILPFEQNLFKD---SPL---------RTVYLGHPLVET--ISSFSP-------------------NLS 402 (608)
T ss_pred HHHHHHhhhheecCccCHHHHHh---cCC---------CeEEECCcHHhh--cccCCC-------------------HHH
Confidence 44456789999999988888876 454 345555543 21 111111 456
Q ss_pred HHHHhCCCCCCCccEEEEEec-ccc-ccCHHHHHHHHH--hcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEEec
Q 008488 390 LQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIP--HFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAK 464 (564)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGr-l~~-~KG~d~ll~A~~--~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~~~~~ 464 (564)
.++++|++.+. ..+.+..|+ -.+ .+....+++|++ .+. ++.++++... +...++.++++....+. .+....
T Consensus 403 ~r~~lgl~~~~-~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a-~~~~~~~i~~~~~~~~~~~~~ii~- 478 (608)
T PRK01021 403 WKEQLHLPSDK-PIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSA-NPKYDHLILEVLQQEGCLHSHIVP- 478 (608)
T ss_pred HHHHcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecC-chhhHHHHHHHHhhcCCCCeEEec-
Confidence 78899996443 334455554 444 667889999998 553 4688877543 33344556655433221 122221
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Cccc
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGG 510 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg 510 (564)
..+.++++++||+.+. .+|++-+|++.+|+|.|+. ..+.
T Consensus 479 --~~~~~~~m~aaD~aLa-----aSGTaTLEaAL~g~PmVV~YK~s~ 518 (608)
T PRK01021 479 --SQFRYELMRECDCALA-----KCGTIVLETALNQTPTIVTCQLRP 518 (608)
T ss_pred --CcchHHHHHhcCeeee-----cCCHHHHHHHHhCCCEEEEEecCH
Confidence 2123579999999998 4799999999999998764 4443
No 126
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.84 E-value=1.9e-05 Score=66.02 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=42.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEe
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~ 524 (564)
+.+.|+..+++++..+|+|+||+|+|+.+.+++.+++.++.+++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~ 46 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITY 46 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEE
Confidence 4678999999999999999999999999999999999999899884
No 127
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.76 E-value=0.0007 Score=63.33 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=71.1
Q ss_pred CcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcC-CCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcC
Q 008488 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND-WHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQ 271 (564)
Q Consensus 193 ~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~-~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~ 271 (564)
|....+....-.+++.+++..|..+ -|.|| ||.+|. |..+ ++++..+ +++|++..+= ..|.
T Consensus 39 ~~~~~e~~~~rg~av~~a~~~L~~~-------Gf~PD-vI~~H~GWGe~---Lflkdv~------P~a~li~Y~E-~~y~ 100 (171)
T PF12000_consen 39 YVRDFEAAVLRGQAVARAARQLRAQ-------GFVPD-VIIAHPGWGET---LFLKDVF------PDAPLIGYFE-FYYR 100 (171)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHc-------CCCCC-EEEEcCCcchh---hhHHHhC------CCCcEEEEEE-EEec
Confidence 4555566666667777776666543 35699 778774 5533 4677665 8898774321 0000
Q ss_pred ccccccccccCCCCcccccccccccCCCCCccCchhH-HHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccce
Q 008488 272 GRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN-WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI 350 (564)
Q Consensus 272 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i 350 (564)
... ...+.+..+...+ +....-+..| ..-..+..+|..++++.+.++.+-..+ ..+|
T Consensus 101 ~~g-----~d~~FDpe~p~~~------~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP~~~-----------r~kI 158 (171)
T PF12000_consen 101 ASG-----ADVGFDPEFPPSL------DDRARLRMRNAHNLLALEQADAGISPTRWQRSQFPAEF-----------RSKI 158 (171)
T ss_pred CCC-----CcCCCCCCCCCCH------HHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCCHHH-----------HcCc
Confidence 000 0111111110000 0000001112 233456799999999999998765411 2399
Q ss_pred EEecCCcccCCC
Q 008488 351 KGIVNGMDVQEW 362 (564)
Q Consensus 351 ~~I~NGid~~~~ 362 (564)
.+|+.|||++.+
T Consensus 159 ~VihdGiDt~~~ 170 (171)
T PF12000_consen 159 SVIHDGIDTDRF 170 (171)
T ss_pred EEeecccchhhc
Confidence 999999998764
No 128
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0065 Score=65.79 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=94.1
Q ss_pred HHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCC-hhhHHHHHHHHHhCC---CceEEEec
Q 008488 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYP---EKARGVAK 464 (564)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~-~~~~~~l~~L~~~~~---~~v~~~~~ 464 (564)
|+.+|||.+ .++|+.-=...|-...+++..-++.. |+-.|++.|.|+ ++....++++.++.+ .++++..+
T Consensus 421 R~~lglp~~----avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLPED----AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCCCC----eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 788999865 36666666677877777776655554 788888888775 578889999998866 47888888
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC--------------ccccccccccC
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS--------------TGGLVDTVEEG 518 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~--------------~gg~~e~v~~g 518 (564)
.+.++....+.-||+++=+..+ +-..+.+||+.+|+|||+-. .-|++|.|.+.
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s 563 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADS 563 (620)
T ss_pred CCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCC
Confidence 8888888899999999966544 45678999999999999642 23677777653
No 129
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.73 E-value=0.0032 Score=65.35 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=64.2
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
.+++|.|.. +...+++++.++ +++.+++ |..+. .. + .+++++.... +..+.+..+|+.||++|.
T Consensus 190 ~iLv~~g~~----~~~~l~~~l~~~--~~~~~i~-~~~~~-~~---~----~~~~~v~~~~-~~~~~~~~~l~~ad~vI~ 253 (321)
T TIGR00661 190 YILVYIGFE----YRYKILELLGKI--ANVKFVC-YSYEV-AK---N----SYNENVEIRR-ITTDNFKELIKNAELVIT 253 (321)
T ss_pred cEEEECCcC----CHHHHHHHHHhC--CCeEEEE-eCCCC-Cc---c----ccCCCEEEEE-CChHHHHHHHHhCCEEEE
Confidence 356665443 556777887766 3555443 43221 11 1 2345676654 544566779999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCcccccc------ccccCcceeE
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQ 523 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e------~v~~g~~G~l 523 (564)
-+- ..++.||+++|+|+|.....+..| .+.+.+.|..
T Consensus 254 ~~G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~ 296 (321)
T TIGR00661 254 HGG----FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIA 296 (321)
T ss_pred CCC----hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEE
Confidence 542 246899999999999988765444 3455566766
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.50 E-value=0.0094 Score=60.05 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=95.3
Q ss_pred HHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
.+.-||.+++++....+.+.. +|-.+.++..-..+.-+. +...|.|. .++.+
T Consensus 123 ~~Pla~~ii~P~~~~~~~~~~---~G~~p~~i~~~~giae~~---~v~~f~pd----------------------~evlk 174 (346)
T COG1817 123 TLPLADVIITPEAIDEEELLD---FGADPNKISGYNGIAELA---NVYGFVPD----------------------PEVLK 174 (346)
T ss_pred chhhhhheecccccchHHHHH---hCCCccceecccceeEEe---ecccCCCC----------------------HHHHH
Confidence 356799999998888877775 676654333222222222 33446553 35678
Q ss_pred HhCCCCCCCccEEEE------EeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccC
Q 008488 393 EVGLPVDRNIPVIGF------IGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~------iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~ 466 (564)
++|+..+. ++|++ ..-...+++.+.+.++++++.+. -.|++-. +++.++ .-+++.+.+ ...-.
T Consensus 175 eLgl~~~~--~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~--giV~ipr-~~~~~e----ife~~~n~i--~pk~~ 243 (346)
T COG1817 175 ELGLEEGE--TYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY--GIVLIPR-EKEQAE----IFEGYRNII--IPKKA 243 (346)
T ss_pred HcCCCCCC--ceEEEeeccccceeeccccchhhHHHHHHHHHhC--cEEEecC-chhHHH----HHhhhcccc--CCccc
Confidence 99997642 44433 11234577888888999988543 3555443 222233 333333211 11111
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc---ccccccccCcceeEe
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQM 524 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~v~~g~~G~l~ 524 (564)
.+.+ +++-.|++++ -+-|.-.-||...|+|.|++.-| +..+...+ .|.++
T Consensus 244 vD~l-~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~lie--~G~~~ 296 (346)
T COG1817 244 VDTL-SLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYLIE--KGLLY 296 (346)
T ss_pred ccHH-HHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHHHh--cCcee
Confidence 1112 3677788887 35677789999999999999854 34444444 56664
No 131
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.31 E-value=0.044 Score=60.60 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=74.8
Q ss_pred ccEEEEEecccc-----ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH--
Q 008488 402 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII-- 474 (564)
Q Consensus 402 ~~~i~~iGrl~~-----~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il-- 474 (564)
.++++..|.... .+-...+++|++.+ +.++++..++.. .. ...+.|+.....++..+ ++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~~~~-~~-------~~~p~Nv~i~~w~Pq~~---lL~h 362 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYDGEV-EA-------INLPANVLTQKWFPQRA---VLKH 362 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEECCCc-Cc-------ccCCCceEEecCCCHHH---HhcC
Confidence 367777888642 33457777777776 457666554431 10 13456787776667654 67
Q ss_pred HhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 475 ~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
..++++|. -+-..++.||+.+|+|+|+-...+ ...-+++.+.|...+ ...-+.++|.++|.
T Consensus 363 p~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~--------~~~~t~~~l~~ai~ 427 (507)
T PHA03392 363 KNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALD--------TVTVSAAQLVLAIV 427 (507)
T ss_pred CCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEec--------cCCcCHHHHHHHHH
Confidence 45888884 344667999999999999875433 555555666777632 11124566666664
No 132
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.17 E-value=0.011 Score=63.37 Aligned_cols=126 Identities=16% Similarity=0.110 Sum_probs=79.9
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
..++.+..|..... .+++-.+++.+.+-++++++...+.+ .. ....+.++.....++... ++..||++
T Consensus 237 ~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~---~~----~~~~p~n~~v~~~~p~~~---~l~~ad~v 304 (406)
T COG1819 237 RPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGAR---DT----LVNVPDNVIVADYVPQLE---LLPRADAV 304 (406)
T ss_pred CCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEeccccc---cc----cccCCCceEEecCCCHHH---HhhhcCEE
Confidence 34566667777655 33333333334334888888764421 11 123455676666666554 79999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
|.. +--.+..||+..|+|+|+--.+ -..+-+++-+.|..+. .+.-+.+.|+++|.+..
T Consensus 305 I~h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~--------~~~l~~~~l~~av~~vL 366 (406)
T COG1819 305 IHH----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALP--------FEELTEERLRAAVNEVL 366 (406)
T ss_pred Eec----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecC--------cccCCHHHHHHHHHHHh
Confidence 974 4445688999999999987544 3566677778887642 33567777877776544
No 133
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.15 E-value=0.067 Score=57.30 Aligned_cols=147 Identities=14% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
-+.||.|.+..+...+.+.+ .|+ ++..+=|.+-.... +.. +
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~---~g~---------k~~~vGnPv~d~l~-~~~--------------------~------ 198 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRR---QGV---------RASYLGNPMMDGLE-PPE--------------------R------ 198 (396)
T ss_pred chhhCEEeCCCHHHHHHHHH---CCC---------eEEEeCcCHHhcCc-ccc--------------------c------
Confidence 35899999999988888875 332 55666666532211 110 0
Q ss_pred hCCCCCCCccEEEEEecc--ccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCC-------------
Q 008488 394 VGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPE------------- 457 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl--~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~------------- 457 (564)
.+++.+ ...++++-|.- +-.+++..++++++.+.+ +++++++.-.+.... +.+++.....+.
T Consensus 199 ~~l~~~-~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~ 276 (396)
T TIGR03492 199 KPLLTG-RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-EKLQAILEDLGWQLEGSSEDQTSLF 276 (396)
T ss_pred cccCCC-CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-HHHHHHHHhcCceecCCccccchhh
Confidence 034322 22355666655 235678899999999954 578877653222212 223322221111
Q ss_pred ---ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 458 ---KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 458 ---~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
.+.... + ..+...+|+.||++|.. .|.+..|++++|+|+|....
T Consensus 277 ~~~~~~v~~-~-~~~~~~~l~~ADlvI~r-----SGt~T~E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 277 QKGTLEVLL-G-RGAFAEILHWADLGIAM-----AGTATEQAVGLGKPVIQLPG 323 (396)
T ss_pred ccCceEEEe-c-hHhHHHHHHhCCEEEEC-----cCHHHHHHHHhCCCEEEEeC
Confidence 122222 2 23456799999999986 56777999999999999874
No 134
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.14 E-value=0.00074 Score=72.05 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=89.2
Q ss_pred ceEEEEEeecc-------CccccchHHHHhhhhHHHHHhC--------CC----eEEEEeeCCCccccccCcceEEEEEe
Q 008488 85 LNILFVGTEVA-------PWSKTGGLGDVLGGLPPALAAN--------GH----RVMTIAPRYDQYKDAWDTDVVIELKV 145 (564)
Q Consensus 85 MkIl~vs~~~~-------P~~~~GG~~~~~~~La~aLa~~--------Gh----~V~vitp~~~~~~~~~~~~~~~~~~~ 145 (564)
-+|+++|...+ -.+.+||.-.++.++++||.+. |- +|.++|.--++.... ......+- +
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t-~~~q~le~-~ 350 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGT-TCNQRLEK-V 350 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCG-GGTSSEEE-E
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCC-Cccccccc-c
Confidence 48999997522 1135999999999999999753 44 477887654332110 01111111 1
Q ss_pred CCeeeeEEEEEeeecCeeEEEEeC-------CcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHH-HhhhhhccC
Q 008488 146 GDKIEKVRFFHCHKRGVDRVFVDH-------PWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAAL-EAPRILNLN 217 (564)
Q Consensus 146 ~~~~~~~~~~~~~~~gv~~~~v~~-------~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l-~~~~~l~~~ 217 (564)
.. ..+..+++++- +.|..| ..+|. |.+ .|...+. ++...+.-
T Consensus 351 ~g-----------t~~a~IlRvPF~~~~gi~~kwisr------f~lWP------yLe------~fa~d~~~~i~~e~~~- 400 (550)
T PF00862_consen 351 SG-----------TENARILRVPFGPEKGILRKWISR------FDLWP------YLE------EFADDAEREILAELQG- 400 (550)
T ss_dssp TT-----------ESSEEEEEE-ESESTEEE-S---G------GG-GG------GHH------HHHHHHHHHHHHHHTS-
T ss_pred CC-----------CCCcEEEEecCCCCcchhhhccch------hhchh------hHH------HHHHHHHHHHHHHhCC-
Confidence 11 12333444421 123333 23332 322 2333333 33444432
Q ss_pred CCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccC
Q 008488 218 SNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDG 297 (564)
Q Consensus 218 ~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 297 (564)
.|| +||.|....++++.+++... +++..++-|...-+. +..++..+-.+..++.-+
T Consensus 401 ---------~Pd-lI~GnYsDgnlvA~LLs~~l-------gv~~~~iaHsLek~K-y~~s~~~w~e~e~~Yhfs------ 456 (550)
T PF00862_consen 401 ---------KPD-LIIGNYSDGNLVASLLSRKL-------GVTQCFIAHSLEKTK-YEDSDLYWKEIEEKYHFS------ 456 (550)
T ss_dssp -----------S-EEEEEHHHHHHHHHHHHHHH-------T-EEEEE-SS-HHHH-HHTTTTTSHHHHHHH-HH------
T ss_pred ---------CCc-EEEeccCcchHHHHHHHhhc-------CCceehhhhcccccc-ccccCCCHHHHHhhccch------
Confidence 499 89999888889999998875 999999999765421 221221111111111110
Q ss_pred CCCCccCchhHHHHHHHHhcceeccCCHHHHH
Q 008488 298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQ 329 (564)
Q Consensus 298 ~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~ 329 (564)
..+.-...+++.||.|||.+.+-..
T Consensus 457 -------~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 457 -------CQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp -------HHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred -------hhhhHHHHHhhcCCEEEEcchHhhc
Confidence 1112233467899999998876554
No 135
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.92 E-value=0.32 Score=50.28 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=90.1
Q ss_pred ccEEEEEecc-ccccCHHHHHHHHHhcccCCeEEEE-EeCC--ChhhHHHHHHHHHhC-C-CceEEEecc-ChHHHHHHH
Q 008488 402 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIV-LGTG--KKPMEKQLEQLEILY-P-EKARGVAKF-NIPLAHMII 474 (564)
Q Consensus 402 ~~~i~~iGrl-~~~KG~d~ll~A~~~l~~~~v~lvI-vG~g--~~~~~~~l~~L~~~~-~-~~v~~~~~~-~~~~~~~il 474 (564)
.+.-+.+|+= ++.-++..+++++++....++++++ +|-| ++++.+++.+.+.++ + +++.....+ +-++..+++
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 3566667775 6777899999999887667888766 4544 456777888877764 4 367655544 778888899
Q ss_pred HhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEe
Q 008488 475 AGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (564)
Q Consensus 475 ~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~ 524 (564)
+.||+.++.... ++.|..++ .+.+|+||+.++...+-..+++..-=++|
T Consensus 264 ~~cDl~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf 313 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLF 313 (360)
T ss_pred HhCCEEEEeechhhhHhHHHH-HHHcCCeEEEecCChHHHHHHhCCCeEEe
Confidence 999999999887 89999887 79999999999876655555544333443
No 136
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.17 Score=50.01 Aligned_cols=197 Identities=19% Similarity=0.235 Sum_probs=107.3
Q ss_pred CCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 226 ~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
++|| +++.-...++.+..++++.+ .++++|-..| -+.+
T Consensus 69 ~~Pd-l~I~aGrrta~l~~~lkk~~------~~~~vVqI~~-----Prlp------------------------------ 106 (329)
T COG3660 69 QRPD-LIITAGRRTAPLAFYLKKKF------GGIKVVQIQD-----PRLP------------------------------ 106 (329)
T ss_pred CCCc-eEEecccchhHHHHHHHHhc------CCceEEEeeC-----CCCC------------------------------
Confidence 5799 55555788899999999876 4655665555 1111
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
....|.|++.-++..++... .|- |++ ++.+.+|-|..+... .
T Consensus 107 --------~~~fDlvivp~HD~~~~~s~---~~~---Nil---pi~Gs~h~Vt~~~lA---------------------a 148 (329)
T COG3660 107 --------YNHFDLVIVPYHDWREELSD---QGP---NIL---PINGSPHNVTSQRLA---------------------A 148 (329)
T ss_pred --------cccceEEeccchhhhhhhhc---cCC---cee---eccCCCCcccHHHhh---------------------h
Confidence 23478888888877776442 111 111 344444444332221 1
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEeccccccCH--HH---HHHHHHhccc-CCeEEEEEeCCC--hhhHHHHHHHHHhCCC
Q 008488 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DI---LAAAIPHFIK-ENVQIIVLGTGK--KPMEKQLEQLEILYPE 457 (564)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~--d~---ll~A~~~l~~-~~v~lvIvG~g~--~~~~~~l~~L~~~~~~ 457 (564)
.+++ +++++ |.. ...+-+++|.=.++-.. |. +..++.+..+ ....+++--+.. +..+..++.--...+.
T Consensus 149 ~~e~-~~~~~-p~~-rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~ 225 (329)
T COG3660 149 LREA-FKHLL-PLP-RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPG 225 (329)
T ss_pred hHHH-HHhhC-CCC-CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCce
Confidence 2344 44443 322 44688899986655443 33 3333333222 456677665432 3334444331111121
Q ss_pred ceEEEec---cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccc
Q 008488 458 KARGVAK---FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 458 ~v~~~~~---~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~ 511 (564)
+.+-.. ++ +. ..+++.||.+|.+.-.-. -.-||.+.|+||-+.--.+.
T Consensus 226 -i~w~~~d~g~N-PY-~~~La~Adyii~TaDSin---M~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 226 -IVWNNEDTGYN-PY-IDMLAAADYIISTADSIN---MCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred -eEeCCCCCCCC-ch-HHHHhhcceEEEecchhh---hhHHHhccCCCeEEEecCCc
Confidence 211111 12 33 359999999998754322 26799999999987754443
No 137
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.13 Score=54.25 Aligned_cols=182 Identities=16% Similarity=0.093 Sum_probs=112.7
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
...+.+..+...|.|++.|+-.++.+.+ .|.. ++.+.-| +....+.. ...+.
T Consensus 167 ~~~~~~~~~~~i~li~aQse~D~~Rf~~---LGa~--------~v~v~GN---lKfd~~~~--------------~~~~~ 218 (419)
T COG1519 167 LKFLARLLFKNIDLILAQSEEDAQRFRS---LGAK--------PVVVTGN---LKFDIEPP--------------PQLAA 218 (419)
T ss_pred HHHHHHHHHHhcceeeecCHHHHHHHHh---cCCc--------ceEEecc---eeecCCCC--------------hhhHH
Confidence 4566777889999999999999999997 6764 3333333 11111111 12234
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceE---
Q 008488 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKAR--- 460 (564)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~--- 460 (564)
..+++|..++.+ .++++..+. +..--+.++++...+.+ +|..++++=.-+ +--+.++++..+.+-.+.
T Consensus 219 ~~~~~r~~l~~~----r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHp-ERf~~v~~l~~~~gl~~~~rS 291 (419)
T COG1519 219 ELAALRRQLGGH----RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHP-ERFKAVENLLKRKGLSVTRRS 291 (419)
T ss_pred HHHHHHHhcCCC----CceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCCh-hhHHHHHHHHHHcCCeEEeec
Confidence 566788888764 367888777 33334568888888877 677777776544 334455555554321111
Q ss_pred -----------EEeccChHHHHHHHHhcCEEEEcCC-CCCCcHHHHHHHHcCCcEEEcC----ccccccccccCcceeE
Q 008488 461 -----------GVAKFNIPLAHMIIAGADFILIPSR-FEPCGLIQLHAMRYGTVPIVAS----TGGLVDTVEEGFTGFQ 523 (564)
Q Consensus 461 -----------~~~~~~~~~~~~il~~ADv~v~PS~-~E~~gl~~lEAma~G~PvI~s~----~gg~~e~v~~g~~G~l 523 (564)
..+. .--++..+|..||+..+--. .+--|=-+||+.++|+|+|.-. ...+.+-+...+.|+.
T Consensus 292 ~~~~~~~~tdV~l~D-tmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~ 369 (419)
T COG1519 292 QGDPPFSDTDVLLGD-TMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQ 369 (419)
T ss_pred CCCCCCCCCcEEEEe-cHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEE
Confidence 1111 22344569999999887644 4555666999999999999652 3334444444555665
No 138
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.74 E-value=0.011 Score=63.88 Aligned_cols=113 Identities=18% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC---CceEEEec
Q 008488 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAK 464 (564)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~---~~v~~~~~ 464 (564)
.|+.+|||.+. ++|..-=...|=.+..++++.++.+ |+..|++..... ..++.+++...+.+ +++.+...
T Consensus 275 ~R~~~gLp~d~----vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 275 TRAQYGLPEDA----VVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-SGEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp ETGGGT--SSS----EEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-THHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred CHHHcCCCCCc----eEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HHHHHHHHHHHHcCCChhhEEEcCC
Confidence 38899998653 4443333457777778887777766 899998876543 23455555555544 57877666
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
-+.++....+..+|+++=|..+ +-+.+.+||+.+|+|||+-..
T Consensus 350 ~~~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp --HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---
T ss_pred CCHHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccC
Confidence 6666555678999999977433 457889999999999998753
No 139
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.58 E-value=0.57 Score=47.78 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=90.6
Q ss_pred cEEEEEecc-ccccCHHHHHHHHHhcccCCeEEEE-EeC--CChhhHHHHHHHHHhC-C-CceEEEecc-ChHHHHHHHH
Q 008488 403 PVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIV-LGT--GKKPMEKQLEQLEILY-P-EKARGVAKF-NIPLAHMIIA 475 (564)
Q Consensus 403 ~~i~~iGrl-~~~KG~d~ll~A~~~l~~~~v~lvI-vG~--g~~~~~~~l~~L~~~~-~-~~v~~~~~~-~~~~~~~il~ 475 (564)
++-+.+|+= ++.-++..+++++++....++++++ +|- |++.+.+++++.+.++ + +++.....+ +-++..++++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 566677775 6778899999999988788899776 454 6777888888887764 3 577766666 6777778999
Q ss_pred hcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcC-ccccccccccCc
Q 008488 476 GADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGF 519 (564)
Q Consensus 476 ~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~ 519 (564)
.+|+.++--.. ++.|+.++ .+..|+||+.++ +.-+.++.+.|.
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~gv 270 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQGL 270 (322)
T ss_pred hCCEEEEeechhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCCC
Confidence 99999998766 89999887 699999998884 566777666543
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.38 E-value=0.093 Score=54.20 Aligned_cols=118 Identities=15% Similarity=0.055 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCCCCCccEEEEEecccc--ccCHH---HHHHHHHhccc-CCeEEEEEeCCC--hhhHHHHHHHHHhCCCc
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEE--QKGSD---ILAAAIPHFIK-ENVQIIVLGTGK--KPMEKQLEQLEILYPEK 458 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~--~KG~d---~ll~A~~~l~~-~~v~lvIvG~g~--~~~~~~l~~L~~~~~~~ 458 (564)
+++++.+++-. ....+.+.+|.=+. .-+.+ .+++.+..+.+ ...++.|..+.- ++.++.|+++....+ .
T Consensus 134 ~~~~~~~~~~l--~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~-~ 210 (311)
T PF06258_consen 134 AAAWAPRLAAL--PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNP-G 210 (311)
T ss_pred HHhhhhhhccC--CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCC-c
Confidence 44455555421 23346677886432 22344 56666666555 467888888653 567777777765443 3
Q ss_pred eEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc
Q 008488 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 459 v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (564)
+.++..-..+=...+|+.||.++++.-.-+ =+-||.+.|+||.+....+
T Consensus 211 ~~~~~~~~~nPy~~~La~ad~i~VT~DSvS---MvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 211 VYIWDGTGENPYLGFLAAADAIVVTEDSVS---MVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred eEEecCCCCCcHHHHHHhCCEEEEcCccHH---HHHHHHHcCCCEEEecCCC
Confidence 433433333334469999999999855332 3889999999999998766
No 141
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=1.2 Score=46.70 Aligned_cols=174 Identities=17% Similarity=0.106 Sum_probs=109.5
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
.-||.-++.++..++.+.+ -|++.+ +|.++-|-+ |.-.+.-. +..........
T Consensus 144 ~~S~~hfapte~ar~nLl~---EG~~~~------~IfvtGnt~iDal~~~~~-----------------~~~~~~~~~~~ 197 (383)
T COG0381 144 HLSDLHFAPTEIARKNLLR---EGVPEK------RIFVTGNTVIDALLNTRD-----------------RVLEDSKILAK 197 (383)
T ss_pred HhhhhhcCChHHHHHHHHH---cCCCcc------ceEEeCChHHHHHHHHHh-----------------hhccchhhHHh
Confidence 3588999999999999887 677654 677776653 22111100 00001112222
Q ss_pred -hCCCCCCCccEEEEEecccc-ccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccCh
Q 008488 394 -VGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 467 (564)
Q Consensus 394 -~gl~~~~~~~~i~~iGrl~~-~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~ 467 (564)
++.. .+..+++..-|-+- .+++..+++++.++.+ ++++++.-=...+..++.. . ..+. .++..+..+..
T Consensus 198 ~~~~~--~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~-~--~~L~~~~~v~li~pl~~ 272 (383)
T COG0381 198 GLDDK--DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELV-L--KRLKNVERVKLIDPLGY 272 (383)
T ss_pred hhccc--cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHH-H--HHhCCCCcEEEeCCcch
Confidence 2322 23356777777654 3999999999998876 5776666444333233222 1 2222 36899999988
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCcceeEee
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMG 525 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~l~~ 525 (564)
...+.++..|-+++- ..|..+=||-..|+||++-+.+ .-+|.++- ++-.+.|
T Consensus 273 ~~f~~L~~~a~~ilt-----DSGgiqEEAp~lg~Pvl~lR~~TERPE~v~a-gt~~lvg 325 (383)
T COG0381 273 LDFHNLMKNAFLILT-----DSGGIQEEAPSLGKPVLVLRDTTERPEGVEA-GTNILVG 325 (383)
T ss_pred HHHHHHHHhceEEEe-----cCCchhhhHHhcCCcEEeeccCCCCccceec-CceEEeC
Confidence 888889999966653 5678899999999999988653 45666654 3545533
No 142
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.95 E-value=3.1 Score=44.97 Aligned_cols=169 Identities=14% Similarity=0.070 Sum_probs=91.2
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+++..++.+|.|.+=-+...+.+.+ .|++.. ++.+.+ |+...-|.... ....
T Consensus 167 r~l~r~vl~~~~~ItvRD~~S~~~Lk~---lGv~~~------~v~~~a---DpAF~L~~~~~--------------~~~~ 220 (426)
T PRK10017 167 NQLANYVFGHCDALILRESVSLDLMKR---SNITTA------KVEHGV---DTAWLVDHHTE--------------DFTA 220 (426)
T ss_pred HHHHHHHHhcCCEEEEccHHHHHHHHH---hCCCcc------ceEEec---ChhhhCCcccc--------------cccc
Confidence 456777889999998888888888775 676533 444433 43332211100 0000
Q ss_pred HHHHHHHhCCCCCCCccEEEEEec-ccc---------ccCHHHHHHHHHhcccCCeEEEEEeCC------ChhhHHHHHH
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGR-LEE---------QKGSDILAAAIPHFIKENVQIIVLGTG------KKPMEKQLEQ 450 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGr-l~~---------~KG~d~ll~A~~~l~~~~v~lvIvG~g------~~~~~~~l~~ 450 (564)
..++...++.+. ..++|++.-| +.+ +.-...+.+++..+.+.+.+++++-.- .+.-....++
T Consensus 221 ~~~~~~~~~~~~--~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~ 298 (426)
T PRK10017 221 SYAVQHWLDVAA--QQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALN 298 (426)
T ss_pred chhhhhhhcccc--cCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHH
Confidence 011111222222 2346655544 321 112245566677766667776666531 1112223344
Q ss_pred HHHhCC--CceE-EEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 451 LEILYP--EKAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 451 L~~~~~--~~v~-~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
+....+ .+++ ....++..++..+++++|++|-.-.+ ..+=|++.|+|+|+-..
T Consensus 299 l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-----a~I~a~~~gvP~i~i~Y 354 (426)
T PRK10017 299 LRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-----SAIISMNFGTPAIAINY 354 (426)
T ss_pred HHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-----HHHHHHHcCCCEEEeee
Confidence 444433 2222 23346666777899999999876554 34558999999998764
No 143
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.68 E-value=1.2 Score=44.75 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=54.8
Q ss_pred EEEEEeccccccCHHHHHHHHHhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
+++..|.-++ |+ +.++.++.+.+.++.+. |+|.+.+.+.+..+... +++ ++..+ .+.+.+..+|..||+.|.
T Consensus 161 ilI~lGGsDp-k~--lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~-~~~-~i~~~--~~~~dma~LMke~d~aI~ 233 (318)
T COG3980 161 ILITLGGSDP-KN--LTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAE-KYP-NINLY--IDTNDMAELMKEADLAIS 233 (318)
T ss_pred EEEEccCCCh-hh--hHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHh-hCC-CeeeE--ecchhHHHHHHhcchhee
Confidence 5566665443 43 34455555544454443 45666665555444444 444 34433 345567779999999996
Q ss_pred cCCCCCCcHHHHHHHHcCCc
Q 008488 483 PSRFEPCGLIQLHAMRYGTV 502 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~P 502 (564)
+-|.++.||...|+|
T Consensus 234 -----AaGstlyEa~~lgvP 248 (318)
T COG3980 234 -----AAGSTLYEALLLGVP 248 (318)
T ss_pred -----ccchHHHHHHHhcCC
Confidence 578999999999999
No 144
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=95.48 E-value=0.4 Score=50.30 Aligned_cols=90 Identities=19% Similarity=0.119 Sum_probs=59.0
Q ss_pred cEEEEEeccc-c-ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLE-E-QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~-~-~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.+.++-|+=. + .+-+..+++++.++.+...++++.|... . +.+++...+.. .+.+. + ....+|+.||+.
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~-~~~~~---~--~~~~~m~~aDla 239 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDIS-EFEIS---Y--DTHKALLEAEFA 239 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCC-CcEEe---c--cHHHHHHhhhHH
Confidence 4556666542 2 4556677799988876557788877654 2 34444332222 23222 1 335689999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
+. ..|.+-+|++.+|+|.|..
T Consensus 240 l~-----~SGT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 240 FI-----CSGTATLEAALIGTPFVLA 260 (347)
T ss_pred Hh-----cCcHHHHHHHHhCCCEEEE
Confidence 97 4689999999999998875
No 145
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.29 E-value=0.21 Score=52.73 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=95.1
Q ss_pred HHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHH
Q 008488 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (564)
Q Consensus 309 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
.........|.+++.|+...+.+.+ .++++.+ .++.-|.. ..|. +.......++
T Consensus 127 ~~~~~~~~~d~~~~~s~~~~~~~~~--~f~~~~~--------~i~~~G~P------R~D~----------l~~~~~~~~~ 180 (369)
T PF04464_consen 127 NYKRNYRNYDYFIVSSEFEKEIFKK--AFGYPED--------KILVTGYP------RNDY----------LFNKSKENRN 180 (369)
T ss_dssp HHHHHHTT-SEEEESSHHHHHHHHH--HTT--GG--------GEEES--G------GGHH----------HHHSTT-HHH
T ss_pred hhhhhccCCcEEEECCHHHHHHHHH--HhccCcc--------eEEEeCCC------eEhH----------HhccCHHHHH
Confidence 3445667899999999999998887 4566543 23444542 1111 1122222367
Q ss_pred HHHHHhCCCCCCCccEEEEEeccccccCH------H--HHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceE
Q 008488 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGS------D--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR 460 (564)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~------d--~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~ 460 (564)
.+++.++++.+ ..+|+|.=.+...... . .-.+.+..+.+.++.+++-.. +......... .....++.
T Consensus 181 ~i~~~~~~~~~--~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~H--p~~~~~~~~~-~~~~~~i~ 255 (369)
T PF04464_consen 181 RIKKKLGIDKD--KKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPH--PNMKKKFKDF-KEDNSNII 255 (369)
T ss_dssp HHHHHTT--SS---EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--S--HHHHTT-----TT-TTTEE
T ss_pred HHHHHhccCCC--CcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeC--chhhhchhhh-hccCCcEE
Confidence 78888988754 3689998665443322 1 122333334447887777553 3333333332 22234455
Q ss_pred EEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHH
Q 008488 461 GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNS 540 (564)
Q Consensus 461 ~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~ 540 (564)
..... +.+..++..||++|. -++-+..|++.+++|+|-..-. ..+... ..|+.++ +...+--.-..+.+
T Consensus 256 ~~~~~--~~~~~ll~~aDiLIT-----DySSi~fD~~~l~KPiify~~D-~~~Y~~--~rg~~~~-~~~~~pg~~~~~~~ 324 (369)
T PF04464_consen 256 FVSDN--EDIYDLLAAADILIT-----DYSSIIFDFLLLNKPIIFYQPD-LEEYEK--ERGFYFD-YEEDLPGPIVYNFE 324 (369)
T ss_dssp E-TT---S-HHHHHHT-SEEEE-----SS-THHHHHGGGT--EEEE-TT-TTTTTT--TSSBSS--TTTSSSS-EESSHH
T ss_pred ECCCC--CCHHHHHHhcCEEEE-----echhHHHHHHHhCCCEEEEecc-HHHHhh--ccCCCCc-hHhhCCCceeCCHH
Confidence 44332 356679999999995 4677899999999999954211 122211 1455433 11110001125778
Q ss_pred HHHhhccc
Q 008488 541 RVIPRIPL 548 (564)
Q Consensus 541 aLa~aI~~ 548 (564)
+|.++|..
T Consensus 325 eL~~~i~~ 332 (369)
T PF04464_consen 325 ELIEAIEN 332 (369)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888876
No 146
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=95.08 E-value=0.051 Score=54.89 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=39.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~ 130 (564)
|+|++|.--.||+ ..||++..+++|.+.|.+.-+.|..++++..+
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~~~~ 45 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGANPED 45 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCCccc
Confidence 8999999999997 88999999999999998888888888877433
No 147
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.01 E-value=0.94 Score=51.91 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=153.9
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCcccccccc-ccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
.| +|..||.+..++|.+++... .++++-+..| ..|+.... ..+...
T Consensus 141 ~d-~vwihdyhlmllp~~lr~~~------~~~~ig~flh-----spfpssEi~r~lp~r--------------------- 187 (732)
T KOG1050|consen 141 GD-IVWIHDYHLMLLPQMLRERF------NSAKIGFFLH-----SPFPSSEIYRCLPVR--------------------- 187 (732)
T ss_pred CC-cEEEEcchhhccchhhhccc------ccceEEEecc-----CCCChHHHHHhcccH---------------------
Confidence 57 89999999999998888764 4777878888 33432211 111111
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCcch---------hhhhccceEEecCCcccCCCCCCCccccccccC
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD---------NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYD 375 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~---------~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~ 375 (564)
.-.-.++..+|.+-.....++..+.+.+- .+.+.. ..=+...+..+|-|+|+..+......
T Consensus 188 -~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~------- 259 (732)
T KOG1050|consen 188 -KEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLEL------- 259 (732)
T ss_pred -HHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccc-------
Confidence 11122455666666666555555443211 111100 00012356667778887776433210
Q ss_pred cchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc------CCeEEEEEeCCC----h---
Q 008488 376 ASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K--- 442 (564)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~------~~v~lvIvG~g~----~--- 442 (564)
+. -..-..+++..+ .+..+|+-+-|+..-||...=+.|+.++.+ ..+.++.+..+. +
T Consensus 260 ~~-----~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~ 329 (732)
T KOG1050|consen 260 PY-----VGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVE 329 (732)
T ss_pred hh-----HHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHH
Confidence 00 001123344333 255688888899999999877777777765 345555554332 2
Q ss_pred hhHHHHHHHHHh----CCC----ceE-EEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcC----CcEEEcCcc
Q 008488 443 PMEKQLEQLEIL----YPE----KAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG----TVPIVASTG 509 (564)
Q Consensus 443 ~~~~~l~~L~~~----~~~----~v~-~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G----~PvI~s~~g 509 (564)
+++.++..+..+ +.. -++ ..-.++..++-++++.||+.++.+..++..++.+|+..|. .+.|.+..-
T Consensus 330 ~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~ 409 (732)
T KOG1050|consen 330 ELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFI 409 (732)
T ss_pred HHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeec
Confidence 233333333332 211 122 2333477788889999999999999999999999999883 677778777
Q ss_pred ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 510 GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 510 g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|-.++.+++ +. .+.|.|.++++..|..+
T Consensus 410 G~~~tl~d~---ai---------vvnpw~~~~~~~~i~~a 437 (732)
T KOG1050|consen 410 GDDTTLEDA---AI---------VVNPWDGDEFAILISKA 437 (732)
T ss_pred ccccccccc---CE---------EECCcchHHHHHHHHHH
Confidence 777777553 33 27888888877766443
No 148
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=94.97 E-value=0.16 Score=53.96 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=69.8
Q ss_pred CccEEEEEecccccc--CHHHHHHHHHhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 401 ~~~~i~~iGrl~~~K--G~d~ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
..++++..|+....+ -++.+++++.++ +++++ ..|.+.. ...++ ..+.++......+.. .+++.|
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~g~~~~--~~~~~----~~~~~v~~~~~~p~~---~ll~~~ 292 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDL---DWHVVLSVGRGVD--PADLG----ELPPNVEVRQWVPQL---EILKKA 292 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcC---CCeEEEEECCCCC--hhHhc----cCCCCeEEeCCCCHH---HHHhhC
Confidence 335677788864322 233344444433 55655 4555432 11222 234567666555543 589999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
|++|..+ | ..+++||+++|+|+|+....+ +.+.+.+.+.|..+. -..-+.++++++|.
T Consensus 293 ~~~I~hg---G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~--------~~~~~~~~l~~ai~ 354 (392)
T TIGR01426 293 DAFITHG---G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP--------PEEVTAEKLREAVL 354 (392)
T ss_pred CEEEECC---C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec--------cccCCHHHHHHHHH
Confidence 9999643 2 246899999999999975433 344455556676532 01124566666654
No 149
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.85 E-value=0.16 Score=42.94 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=60.5
Q ss_pred EEEEeCCChhhHHHHHHHHHhCCCceEEE---eccChHH--HHHHHHhcCEEEEcCCC---CCCcHHHHHHHHcCCcEEE
Q 008488 434 IIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPL--AHMIIAGADFILIPSRF---EPCGLIQLHAMRYGTVPIV 505 (564)
Q Consensus 434 lvIvG~g~~~~~~~l~~L~~~~~~~v~~~---~~~~~~~--~~~il~~ADv~v~PS~~---E~~gl~~lEAma~G~PvI~ 505 (564)
++|+|+-+ .....++++.++++.++..+ .+..... ++..+..||++|++..+ ..+-.+--+|-.+|+|++-
T Consensus 2 vliVGG~~-~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGRE-DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCc-ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 56777632 25677788888888778877 5554444 77899999999998775 4566667788899999999
Q ss_pred cCcccccccc
Q 008488 506 ASTGGLVDTV 515 (564)
Q Consensus 506 s~~gg~~e~v 515 (564)
+...|+..+.
T Consensus 81 ~~~~~~~~l~ 90 (97)
T PF10087_consen 81 SRSRGVSSLE 90 (97)
T ss_pred ECCCCHHHHH
Confidence 9977766554
No 150
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.95 E-value=1.1 Score=46.49 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHHHHhCCCCCCCccEEEEEec-cccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceE-EE
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGR-LEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR-GV 462 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGr-l~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~-~~ 462 (564)
.+.+..+++++.+ +..+++..|. ..+.|. .+...+.++.+.+.+.+++++|+..+ ++..+++....+..+. ..
T Consensus 161 ~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e--~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDTE-RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD--HPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCCC-CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh--HHHHHHHHHhCCcccccCC
Confidence 4445667777532 2234445554 445564 55777777777656789999997542 3344555544443333 34
Q ss_pred eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 463 ~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+..+-.++..+++.||++|-.-. -++=+ |.|.|+|+|+--
T Consensus 238 g~~sL~el~ali~~a~l~I~~DS---Gp~Hl--AaA~~~P~i~lf 277 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTNDS---GLMHV--AAALNRPLVALY 277 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeCC---HHHHH--HHHcCCCEEEEE
Confidence 55577777889999999996532 22222 678999999753
No 151
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=92.19 E-value=11 Score=38.04 Aligned_cols=140 Identities=12% Similarity=0.049 Sum_probs=76.2
Q ss_pred CccEE---EEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCC-hhhHHHHHH--------------HHHhCCCceEE
Q 008488 401 NIPVI---GFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK-KPMEKQLEQ--------------LEILYPEKARG 461 (564)
Q Consensus 401 ~~~~i---~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~-~~~~~~l~~--------------L~~~~~~~v~~ 461 (564)
+.... .|+||....||+..+++.-++..+ +++.-++-|-.. ...-..++. .....+.-+..
T Consensus 179 se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v 258 (355)
T PF11440_consen 179 SEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPV 258 (355)
T ss_dssp GGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEE
T ss_pred HhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCccee
Confidence 33455 899999999999999998887766 688888888322 111111111 11111123566
Q ss_pred EeccChHHHHHHHHhcCEEEEcCCC------CCCcHHHHHHHHcCCcEEEc-Ccccccccccc------CcceeEeeccc
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEE------GFTGFQMGSFS 528 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~~------E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~------g~~G~l~~~~~ 528 (564)
++.+-.++.-..|+.+-+...-+.. +..-.+++|..|||+.+|-- .+|-.-..-.| ...|.++
T Consensus 259 ~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~---- 334 (355)
T PF11440_consen 259 YGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIY---- 334 (355)
T ss_dssp ESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EE----
T ss_pred cchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeE----
Confidence 7777666666789988888766542 45788999999999976644 44544432222 2345443
Q ss_pred cccccCCCCCHHHHHhhcccC
Q 008488 529 VDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 529 ~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+..|.++-.+.|.|.
T Consensus 335 -----~De~dle~T~ekl~E~ 350 (355)
T PF11440_consen 335 -----FDENDLESTVEKLIEV 350 (355)
T ss_dssp -----E-TTSHHHHHHHHHHH
T ss_pred -----eccchHHHHHHHHHHH
Confidence 6888888877776653
No 152
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.73 E-value=5.7 Score=41.57 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=94.8
Q ss_pred hcceeccCCHHH-HHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHh
Q 008488 316 ESDMVLTVSPHY-AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (564)
Q Consensus 316 ~ad~vi~vS~~~-~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (564)
-.|.|++.++.. +..+.+ +.+ ..+...+++++|...+.|.+.-
T Consensus 138 ~fd~v~~~g~~l~~~~yyq--~~~--------~~~~~~~~~a~d~~~~~~i~~d-------------------------- 181 (373)
T COG4641 138 IFDNVLSFGGGLVANKYYQ--EGG--------ARNCYYLPWAVDDSLFHPIPPD-------------------------- 181 (373)
T ss_pred hhhhhhhccchHHHHHHHH--hhc--------ccceeccCccCCchhcccCCcc--------------------------
Confidence 445577777766 444432 111 1267888999999999886520
Q ss_pred CCCCCCCccEEEEEeccccccCHHHHHHHHHhccc---CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccCh-HHH
Q 008488 395 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI-PLA 470 (564)
Q Consensus 395 gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~-~~~ 470 (564)
..-.--+.++|.-.+. ..+.+-+.+-+-.. .+-++.+.|..-+ ...... ....++...+.++. ...
T Consensus 182 ----a~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~--~~~~~~---~~~~~~~yIg~~~~~~~v 251 (373)
T COG4641 182 ----ASYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGPRYP--DDIWGR---TWEPNVQYIGYYNPKDGV 251 (373)
T ss_pred ----ccceeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCCccc--hhhhcc---cccchhhhhhccCccchh
Confidence 0111258888887665 33333333222111 2345666776510 111111 01123444455543 566
Q ss_pred HHHHHhcCEEEEcCCC---CCC---cHHHHHHHHcCCcEEEcCccccccccccCcceeE
Q 008488 471 HMIIAGADFILIPSRF---EPC---GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQ 523 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~---E~~---gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l 523 (564)
+..++.-|+.+.-++. ++. .+-+.|+|+||.+.|++...++.-++.+|..-.+
T Consensus 252 ~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv 310 (373)
T COG4641 252 PNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIV 310 (373)
T ss_pred hhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEE
Confidence 6677888888766553 332 6779999999999999998988888888766554
No 153
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=91.62 E-value=0.79 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.5
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcch
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELD 342 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~ 342 (564)
..+|..++.|+.+++++.+ +|++.+
T Consensus 136 ~~~D~y~Vase~~~~~l~~---~Gi~~~ 160 (169)
T PF06925_consen 136 PGVDRYFVASEEVKEELIE---RGIPPE 160 (169)
T ss_pred CCCCEEEECCHHHHHHHHH---cCCChh
Confidence 4699999999999999997 899876
No 154
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.56 E-value=1.5 Score=43.32 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=61.3
Q ss_pred ccEEEEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEEeccChHHHHHHHHhcC
Q 008488 402 IPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~~~~~~~~~~~~~il~~AD 478 (564)
..+++..|.-.+.|. .+...+.++.+.+..++++++|...+..++.++++....+. .+...+..+-.++..+++.||
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~ 185 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRAD 185 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSS
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCC
Confidence 345666666667776 45588888888766688999998764345555556554432 344555667777788999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
++|-+-. |..=+ |.+.|+|+|+--
T Consensus 186 ~~I~~Dt----g~~Hl-A~a~~~p~v~lf 209 (247)
T PF01075_consen 186 LVIGNDT----GPMHL-AAALGTPTVALF 209 (247)
T ss_dssp EEEEESS----HHHHH-HHHTT--EEEEE
T ss_pred EEEecCC----hHHHH-HHHHhCCEEEEe
Confidence 9997632 33222 678999999874
No 155
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=91.46 E-value=7 Score=39.82 Aligned_cols=100 Identities=14% Similarity=-0.001 Sum_probs=61.2
Q ss_pred cEEEEEeccc---cccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 403 PVIGFIGRLE---EQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 403 ~~i~~iGrl~---~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
+.+++.-|-. ..+..+.+.+++..+.+ .+.+++++......-.+..+++....+.........+.++.-.++++||
T Consensus 173 ~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~ 252 (298)
T TIGR03609 173 PVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASAR 252 (298)
T ss_pred CeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCC
Confidence 4566554432 22345677788887765 3777766654321123455556555443222234446666667999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
++|-...+ ..+=|+.+|+|+|+-.
T Consensus 253 ~vI~~RlH-----~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 253 LVIGMRLH-----ALILAAAAGVPFVALS 276 (298)
T ss_pred EEEEechH-----HHHHHHHcCCCEEEee
Confidence 88876665 3455899999999764
No 156
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=90.33 E-value=3.1 Score=43.66 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=63.1
Q ss_pred cEEEEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCC-Cc-eEEEeccChHHHHHHHHhcC
Q 008488 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP-EK-ARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~-~~-v~~~~~~~~~~~~~il~~AD 478 (564)
.+++..|.-.+.|. .+...+.++.+.+.+++++++|+..+.-.+..+++..... .. +...+..+-.++..+++.||
T Consensus 185 ~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 264 (352)
T PRK10422 185 YVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQ 264 (352)
T ss_pred eEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCC
Confidence 45566776556665 5577777777765678999998654222233344444322 12 33445567777778999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
++|-.-. |..=+ |.|.|+|+|+--
T Consensus 265 l~v~nDS----Gp~Hl-AaA~g~P~v~lf 288 (352)
T PRK10422 265 LFIGVDS----APAHI-AAAVNTPLICLF 288 (352)
T ss_pred EEEecCC----HHHHH-HHHcCCCEEEEE
Confidence 9996422 22222 678899999764
No 157
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=90.15 E-value=3.6 Score=36.14 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=40.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCe----eeeEEEEEeeec
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDK----IEKVRFFHCHKR 160 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 160 (564)
|||+|+-. |.....=..+....|+.+..++||+|..+.+..-.+.+..-......+.+.+. .+..........
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~ 77 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLD 77 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccc
Confidence 89999995 43222122345667899999999999999986322222111111223333222 122222234556
Q ss_pred CeeEEEEeC
Q 008488 161 GVDRVFVDH 169 (564)
Q Consensus 161 gv~~~~v~~ 169 (564)
.++++++..
T Consensus 78 ~~DvvlmRk 86 (119)
T PF02951_consen 78 DFDVVLMRK 86 (119)
T ss_dssp GSSEEEEE-
T ss_pred cCCEEEEec
Confidence 788888753
No 158
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=89.95 E-value=4.4 Score=42.26 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=62.6
Q ss_pred cEEEEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceE-EEeccChHHHHHHHHhcC
Q 008488 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KAR-GVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~-~~~~~~~~~~~~il~~AD 478 (564)
.+++..|.-.+.|. .+...+.++.+.+.+++++++|+..+.-++..+++....+. ++. ..+..+-.++..+++.||
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 262 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHAR 262 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCC
Confidence 34555665445554 56677777777556789999986542222334455444332 233 445557777778999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
++|-.- .|..=+ |.|.|+|+|+--
T Consensus 263 l~Vs~D----SGp~Hl-AaA~g~p~v~Lf 286 (344)
T TIGR02201 263 LFIGVD----SVPMHM-AAALGTPLVALF 286 (344)
T ss_pred EEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 999752 222222 688999999764
No 159
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.18 E-value=2.6 Score=42.44 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred EEEEEecccccc--CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhC-CCc-eEEEeccChHHHHHHHHhcCE
Q 008488 404 VIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY-PEK-ARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 404 ~i~~iGrl~~~K--G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~-~~~-v~~~~~~~~~~~~~il~~ADv 479 (564)
+++..|.-.+.| ..+...+.++.+.+.+++++++|+.+ -++..+++.... ..+ +...+..+-.+...+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~--e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA--ERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh--hHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 444555545555 45788888888866689999998754 244455555543 122 333444466777789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 512 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 512 (564)
+|-+. .|..-+ |.+.|+|+|+--....+
T Consensus 202 ~I~~D----sg~~Hl-A~a~~~p~i~l~g~~~~ 229 (279)
T cd03789 202 VVTND----SGPMHL-AAALGTPTVALFGPTDP 229 (279)
T ss_pred EEeeC----CHHHHH-HHHcCCCEEEEECCCCc
Confidence 99763 244444 46999999987544333
No 160
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=88.59 E-value=2.2 Score=35.18 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEcc
Q 008488 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHN 267 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~ 267 (564)
+.| |||.|...+.+..-.+.... ..+.|+|||-|.
T Consensus 50 ~I~-IVHgH~a~S~l~hE~i~hA~-----~mGlktVfTDHS 84 (90)
T PF08288_consen 50 RID-IVHGHQAFSTLCHEAILHAR-----TMGLKTVFTDHS 84 (90)
T ss_pred Cee-EEEeehhhhHHHHHHHHHHH-----hCCCcEEeeccc
Confidence 588 99999877666544332211 159999999994
No 161
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=87.56 E-value=7 Score=40.83 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHhCCCCCCCccEEEEEec-cccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC----ce-
Q 008488 388 EALQAEVGLPVDRNIPVIGFIGR-LEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE----KA- 459 (564)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGr-l~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~----~v- 459 (564)
+.+.+.+++..+ ...+.+..|. ..+.|. .+...+.++.+.+.+++++++|+..+ ++..+++....+. ++
T Consensus 168 ~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e--~~~~~~i~~~~~~~~~~~~~ 244 (348)
T PRK10916 168 SETCAAFSLSSE-RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKD--HEAGNEILAALNTEQQAWCR 244 (348)
T ss_pred HHHHHHcCCCCC-CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHh--HHHHHHHHHhccccccccee
Confidence 334555555322 2234445554 345564 45667777666556789999986542 3334444333321 22
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
...+..+-.++..+++.||++|-.-. |..=+ |.|.|+|+|+-
T Consensus 245 ~l~g~~sL~el~ali~~a~l~I~nDT----Gp~Hl-AaA~g~P~val 286 (348)
T PRK10916 245 NLAGETQLEQAVILIAACKAIVTNDS----GLMHV-AAALNRPLVAL 286 (348)
T ss_pred eccCCCCHHHHHHHHHhCCEEEecCC----hHHHH-HHHhCCCEEEE
Confidence 23344566677789999999996532 22222 67889999975
No 162
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.26 E-value=6 Score=41.22 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=70.1
Q ss_pred EEEEEe-ccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 404 VIGFIG-RLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 404 ~i~~iG-rl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
+++..| .-...|. .+...+.++.+.+...++++.|+.+ -++..+++...+++.+...+..+-.++-.+++.||++
T Consensus 178 i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~--e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~ 255 (334)
T COG0859 178 IVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD--EEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLV 255 (334)
T ss_pred EEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH--HHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEE
Confidence 455566 5556666 5577777888777678999999873 5677788887776544456666777777899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
|-+.. |..=+ |.|.|+|+|+--
T Consensus 256 I~~DS----g~~Hl-AaA~~~P~I~iy 277 (334)
T COG0859 256 IGNDS----GPMHL-AAALGTPTIALY 277 (334)
T ss_pred EccCC----hHHHH-HHHcCCCEEEEE
Confidence 97633 33333 788999999874
No 163
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=86.21 E-value=4.3 Score=37.68 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHhcceeccCCHHHHHHHHc
Q 008488 313 GILESDMVLTVSPHYAQELVS 333 (564)
Q Consensus 313 ~~~~ad~vi~vS~~~~~~l~~ 333 (564)
....||.|++.|.+-++.+.+
T Consensus 116 saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 116 SALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred HHHhceeeeecchhhHHHHHH
Confidence 345799999999999988775
No 164
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=85.57 E-value=50 Score=34.56 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc-CCeE---EEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHh
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQ---IIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAG 476 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~---lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ 476 (564)
.+++.+|.- +-|-+++..+++.... ++++ ++|.|.--+ +.+.+++...-+ .++.. ..|..+ ..+++++
T Consensus 221 ~Ilvs~GGG--~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP--~~~r~~l~~~A~~~p~i~I-~~f~~~-~~~ll~g 294 (400)
T COG4671 221 DILVSVGGG--ADGAELIETALAAAQLLAGLNHKWLIVTGPFMP--EAQRQKLLASAPKRPHISI-FEFRND-FESLLAG 294 (400)
T ss_pred eEEEecCCC--hhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCC--HHHHHHHHHhcccCCCeEE-EEhhhh-HHHHHHh
Confidence 467777754 3355544444433322 3333 555564432 344444444322 23543 344333 3369999
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-cccccccccc----CcceeEeeccccccccCCCC--CHHHHHhhcccC
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEE----GFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPLD 549 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~----g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~~ 549 (564)
|+..|.=. -=++..|-++.|+|.+.-- .-+-.|...- .+-|+. +...|+ +++.||++|...
T Consensus 295 A~~vVSm~----GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~--------dvL~pe~lt~~~La~al~~~ 362 (400)
T COG4671 295 ARLVVSMG----GYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLV--------DVLLPENLTPQNLADALKAA 362 (400)
T ss_pred hheeeecc----cchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcc--------eeeCcccCChHHHHHHHHhc
Confidence 99998532 2356789999999976553 3222232211 122331 223443 467788887665
Q ss_pred Cc
Q 008488 550 ST 551 (564)
Q Consensus 550 ~~ 551 (564)
..
T Consensus 363 l~ 364 (400)
T COG4671 363 LA 364 (400)
T ss_pred cc
Confidence 54
No 165
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=84.94 E-value=9.4 Score=39.19 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=63.4
Q ss_pred cEEEEEeccccccCH--HHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~--d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.+++..|.=.+.|.. +...+.++.+.+.+++++++|+++. -++..+++....+. ....+..+-.++..+++.||++
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA-EKQRAERIAEALPG-AVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCCEE
Confidence 355566654566654 6777777777656788888865543 23344555555443 2345666777777899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
|-.-. -++=+ |.+.|+|+|+--
T Consensus 259 I~~DS---gp~Hl--Aaa~g~P~i~lf 280 (319)
T TIGR02193 259 VGVDT---GLTHL--AAALDKPTVTLY 280 (319)
T ss_pred EeCCC---hHHHH--HHHcCCCEEEEE
Confidence 97532 22222 678899999864
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.68 E-value=5.3 Score=40.14 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCccEEEEEeccccc-------cCHHHHHHHHHhccc--CCeEEEEEeCCCh---hhHHHHHHHHHhCCCceEEEeccCh
Q 008488 400 RNIPVIGFIGRLEEQ-------KGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNI 467 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~-------KG~d~ll~A~~~l~~--~~v~lvIvG~g~~---~~~~~l~~L~~~~~~~v~~~~~~~~ 467 (564)
.+++++++....... .....+++.+..+.+ ++.+++|-=.... .....+.++.. .. ++.... +.
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~-~~~~~~--~~ 190 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LP-NVVIID--DD 190 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CC-CeEEEC--CC
Confidence 355788888877654 233445555555544 5788877543211 11233333322 12 232221 22
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (564)
-....++..||.++.- .+.+.+||+.+|+|||+....
T Consensus 191 ~~~~~Ll~~s~~Vvti-----nStvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 191 VNLYELLEQSDAVVTI-----NSTVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CCHHHHHHhCCEEEEE-----CCHHHHHHHHcCCceEEecCc
Confidence 2344689999999863 567899999999999997543
No 167
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=84.58 E-value=1.1 Score=43.19 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~ 130 (564)
||||+.+..- =.+.-+..|.++|++.||+|.|++|..++
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 9999999752 22334888999998889999999998653
No 168
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=81.52 E-value=1.3 Score=48.34 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=92.9
Q ss_pred HHHHhCCCCCCCccEEEEEeccccccCH----HHHHHHHHhccc-C----CeEEEEEeCCC-h--hhHHHHHHHHHh---
Q 008488 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGS----DILAAAIPHFIK-E----NVQIIVLGTGK-K--PMEKQLEQLEIL--- 454 (564)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGrl~~~KG~----d~ll~A~~~l~~-~----~v~lvIvG~g~-~--~~~~~l~~L~~~--- 454 (564)
+.+++|...+++..-=+.+-|++++|+. ..++-.+.++++ + --+.+++|+-. + .+.+++-.|...
T Consensus 551 le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V~d 630 (843)
T KOG2099|consen 551 LEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAVAD 630 (843)
T ss_pred HHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHHHH
Confidence 4567777665544344668899999964 334444555544 1 23466666422 1 233333333321
Q ss_pred ----CC-----CceEEEeccChHHHHHHHHhcCEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--Ccce
Q 008488 455 ----YP-----EKARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTG 521 (564)
Q Consensus 455 ----~~-----~~v~~~~~~~~~~~~~il~~ADv~v~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G 521 (564)
.| -+|+|...|+...+..++.++|+==.-|. .|+.|..-+.-|..|+..|.|-.|+.+|+-++ .+|-
T Consensus 631 vVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm~eE~GeeN~ 710 (843)
T KOG2099|consen 631 VVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEAGEENF 710 (843)
T ss_pred HhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHHHHHcCcccE
Confidence 11 37889999998888889999998644444 69999999999999999999999999998876 3578
Q ss_pred eEee
Q 008488 522 FQMG 525 (564)
Q Consensus 522 ~l~~ 525 (564)
|+||
T Consensus 711 FiFG 714 (843)
T KOG2099|consen 711 FIFG 714 (843)
T ss_pred EEec
Confidence 8888
No 169
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=80.66 E-value=1.4 Score=40.65 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=30.1
Q ss_pred ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc
Q 008488 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 458 ~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (564)
++..+...+ .+..+|+.||++|. =+-+.++.|++++|+|.|.-...+
T Consensus 56 ~v~~~~~~~--~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~ 102 (167)
T PF04101_consen 56 NVKVFGFVD--NMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPG 102 (167)
T ss_dssp CCEEECSSS--SHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TT
T ss_pred cEEEEechh--hHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCC
Confidence 455444433 25679999998885 244578999999999988765544
No 170
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=78.87 E-value=3.3 Score=36.55 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
..+..++..+|++|--|.-+..--.+-.++.+|+|+|+--+|.-.|-
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 34567888899999888656555567778889999999888875543
No 171
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=75.08 E-value=22 Score=33.34 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEE
Q 008488 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~t 264 (564)
+|| +|.++...++...+++.+.++-.+. .++|+||.
T Consensus 92 rPd-vii~nGpg~~vp~~~~~~l~~~~~~-~~~kiIyI 127 (170)
T PF08660_consen 92 RPD-VIISNGPGTCVPVCLAAKLLRLLGL-RGSKIIYI 127 (170)
T ss_pred CCC-EEEEcCCceeeHHHHHHHHHHHhhc-cCCcEEEE
Confidence 699 8999998888888877766433322 26777763
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.74 E-value=25 Score=36.15 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=59.8
Q ss_pred EEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 406 GFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 406 ~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
+..|.-.+.|. .+...+.++.+.+.++++++.|+++. -++..+++....+ .+...+..+-.++..+++.||++|-.
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~-e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I~n 260 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH-EEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVVSV 260 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEEec
Confidence 34444334454 55677777777656788888643432 2334555544433 34455666777777899999999965
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 484 SRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
-. |.. -=|-++|+|+|+-=.
T Consensus 261 DS----Gp~-HlA~A~g~p~valfG 280 (322)
T PRK10964 261 DT----GLS-HLTAALDRPNITLYG 280 (322)
T ss_pred CC----cHH-HHHHHhCCCEEEEEC
Confidence 32 222 227889999998643
No 173
>PLN02448 UDP-glycosyltransferase family protein
Probab=74.19 E-value=20 Score=39.19 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=60.2
Q ss_pred cEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.+++..|.... .+-+..++++++.. +..++++..++. ..+++. .+++.......++.+ +++..++-
T Consensus 276 vvyvsfGs~~~~~~~~~~~~~~~l~~~---~~~~lw~~~~~~---~~~~~~---~~~~~~v~~w~pQ~~---iL~h~~v~ 343 (459)
T PLN02448 276 VLYVSLGSFLSVSSAQMDEIAAGLRDS---GVRFLWVARGEA---SRLKEI---CGDMGLVVPWCDQLK---VLCHSSVG 343 (459)
T ss_pred eEEEeecccccCCHHHHHHHHHHHHhC---CCCEEEEEcCch---hhHhHh---ccCCEEEeccCCHHH---HhccCccc
Confidence 56666777632 22355666666654 677777654431 112221 223454444445443 78887773
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccC-cceeEe
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEG-FTGFQM 524 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g-~~G~l~ 524 (564)
.+-+. +--.+++||+++|+|+|+--.. .....+.+. +.|+-+
T Consensus 344 ~fvtH--gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~ 390 (459)
T PLN02448 344 GFWTH--CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRV 390 (459)
T ss_pred eEEec--CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEE
Confidence 32222 3345799999999999987543 344555542 456653
No 174
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=73.24 E-value=6.3 Score=35.09 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=31.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeE-EEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V-~vitp~ 127 (564)
|||+++... .|+ .+-......+++.++.+.||+| .|+...
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 899999986 786 4455567888999999999994 666543
No 175
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=72.17 E-value=22 Score=33.49 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=62.0
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEE-eccChHHHHH---HH--HhcCEEEEcCCCCC
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV-AKFNIPLAHM---II--AGADFILIPSRFEP 488 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~~~-~~~~~~~~~~---il--~~ADv~v~PS~~E~ 488 (564)
|.|++.+.++...+.+.++.++|+.+...++..+.+..+||+ ++... +.|+.++... .+ +++|++++ +
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~V-----g 107 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFV-----G 107 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEE-----E
Confidence 899999999887667789999999888888999999999985 44444 3344332222 22 36798887 4
Q ss_pred CcHHHHHHHH------cCCcEEEcCccccccccc
Q 008488 489 CGLIQLHAMR------YGTVPIVASTGGLVDTVE 516 (564)
Q Consensus 489 ~gl~~lEAma------~G~PvI~s~~gg~~e~v~ 516 (564)
+|..-.|-.. ...+ |.-..||.-|+..
T Consensus 108 lG~PkQE~~~~~~~~~~~~~-v~~gvGg~fd~~a 140 (177)
T TIGR00696 108 LGCPKQEIWMRNHRHLKPDA-VMIGVGGSFDVFS 140 (177)
T ss_pred cCCcHhHHHHHHhHHhCCCc-EEEEeceeeeecc
Confidence 4444444332 2333 3334777776653
No 176
>PLN02562 UDP-glycosyltransferase
Probab=71.39 E-value=20 Score=39.05 Aligned_cols=111 Identities=8% Similarity=-0.083 Sum_probs=61.1
Q ss_pred cEEEEEeccc---cccCHHHHHHHHHhcccCCeEEEE-EeCCCh-hhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 403 PVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIV-LGTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 403 ~~i~~iGrl~---~~KG~d~ll~A~~~l~~~~v~lvI-vG~g~~-~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
.+++..|... +.+-+..++.+++++ ..++++ +..+.. .+.+ ...++.++++......++.+ +++..
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~fiW~~~~~~~~~l~~---~~~~~~~~~~~v~~w~PQ~~---iL~h~ 345 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEAS---GRPFIWVLNPVWREGLPP---GYVERVSKQGKVVSWAPQLE---VLKHQ 345 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHC---CCCEEEEEcCCchhhCCH---HHHHHhccCEEEEecCCHHH---HhCCC
Confidence 5677788754 445566677777766 334443 332211 1111 11122234555455445554 78887
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcC----ccccccccccC-cceeEe
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLVDTVEEG-FTGFQM 524 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~----~gg~~e~v~~g-~~G~l~ 524 (564)
++..+-+. +--.+.+||+.+|+|+|+.- .......+.+. +.|+-+
T Consensus 346 ~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~ 395 (448)
T PLN02562 346 AVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI 395 (448)
T ss_pred ccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEe
Confidence 75333332 23456999999999999764 34455555543 566653
No 177
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=71.26 E-value=6.3 Score=43.34 Aligned_cols=107 Identities=16% Similarity=0.037 Sum_probs=58.6
Q ss_pred CccEEEEEecccc---ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 401 NIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 401 ~~~~i~~iGrl~~---~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
+..+++..|.+.. .+-.+.++++++++ ++ +++..=.+.. ...+. .++....+.++.+ +++..
T Consensus 276 ~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~--~~-~~iW~~~~~~-----~~~l~----~n~~~~~W~PQ~~---lL~hp 340 (500)
T PF00201_consen 276 KGVVYVSFGSIVSSMPEEKLKEIAEAFENL--PQ-RFIWKYEGEP-----PENLP----KNVLIVKWLPQND---LLAHP 340 (500)
T ss_dssp TEEEEEE-TSSSTT-HHHHHHHHHHHHHCS--TT-EEEEEETCSH-----GCHHH----TTEEEESS--HHH---HHTST
T ss_pred CCEEEEecCcccchhHHHHHHHHHHHHhhC--CC-cccccccccc-----ccccc----ceEEEeccccchh---hhhcc
Confidence 4456777788642 22255677777776 33 7777655531 11222 3566555556544 67766
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccCcceeEe
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEEGFTGFQM 524 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~g~~G~l~ 524 (564)
.+-++=+. +--.+++||+.+|+|+|+--. -.....+++.+.|..+
T Consensus 341 ~v~~fitH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l 389 (500)
T PF00201_consen 341 RVKLFITH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVL 389 (500)
T ss_dssp TEEEEEES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEE
T ss_pred cceeeeec--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEE
Confidence 54333222 344569999999999999754 3355666666677763
No 178
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.20 E-value=5.6 Score=37.66 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.9
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
|||++|+.. |-+| ..++++..++||+|+.|+.+.
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeCh
Confidence 899999974 3333 457888889999999999874
No 179
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=70.54 E-value=6.7 Score=34.63 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=21.1
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|-=.=.-.|+++|.++||||.+.++.
T Consensus 8 t~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 4554445567999999999999988875
No 180
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=66.82 E-value=1.4e+02 Score=30.79 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
++...|.+-+ .| .-|-++.+..|...|.++||+|-|++-..
T Consensus 49 G~a~viGITG---~P---GaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 49 GNAHVIGITG---VP---GAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCCcEEEecC---CC---CCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 4455565555 45 46888899999999999999999998653
No 181
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=66.75 E-value=44 Score=31.18 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=60.7
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEE--EeccChHHHH---HHH--HhcCEEEEcC
Q 008488 413 EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARG--VAKFNIPLAH---MII--AGADFILIPS 484 (564)
Q Consensus 413 ~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~~--~~~~~~~~~~---~il--~~ADv~v~PS 484 (564)
.--|.|++.+.++...+.+.++.++|+.++..++..+.+...+|+ ++.. .+.+..++.. ..+ .++|++++--
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 344999999999988777899999999888788888889999985 3443 2233322211 222 3678888742
Q ss_pred C---CCCCcHHHHHHHHcCCcEEEcCcccccccc
Q 008488 485 R---FEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515 (564)
Q Consensus 485 ~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~v 515 (564)
- -|-+-....+.+ ..+++. ..||.-|+.
T Consensus 108 G~PkQE~~~~~~~~~l--~~~v~~-~vG~~~d~~ 138 (171)
T cd06533 108 GAPKQELWIARHKDRL--PVPVAI-GVGGSFDFL 138 (171)
T ss_pred CCCHHHHHHHHHHHHC--CCCEEE-EeceeeEec
Confidence 2 133322222222 233333 366665554
No 182
>PLN03004 UDP-glycosyltransferase
Probab=65.58 E-value=27 Score=38.14 Aligned_cols=115 Identities=9% Similarity=-0.124 Sum_probs=63.2
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCCh-------hhHHHH-HHHHHhCC-CceEEEeccChHHH
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKK-------PMEKQL-EQLEILYP-EKARGVAKFNIPLA 470 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~-------~~~~~l-~~L~~~~~-~~v~~~~~~~~~~~ 470 (564)
..+++..|... +.+-...|..+++... ..|+.+=..+. .....+ +...++.. .++....+.++.+
T Consensus 271 sVvyvsfGS~~~~~~~q~~ela~gL~~s~---~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~- 346 (451)
T PLN03004 271 SVVFLCFGSLGLFSKEQVIEIAVGLEKSG---QRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP- 346 (451)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHCC---CCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH-
Confidence 35666778773 3555666777777662 23333322110 011101 11112221 2455555556654
Q ss_pred HHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC----cccccccccc-CcceeEe
Q 008488 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLVDTVEE-GFTGFQM 524 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~----~gg~~e~v~~-g~~G~l~ 524 (564)
+++.+++-.+-+. +--++++||+++|+|+|+.- .......+.+ -+.|..+
T Consensus 347 --iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l 401 (451)
T PLN03004 347 --VLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISM 401 (451)
T ss_pred --HhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEe
Confidence 7899998443332 33457999999999999874 4445556643 3677764
No 183
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=65.13 E-value=18 Score=36.49 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc---ccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
..+.|+.+.+.++|.-..+...-+.|||++||.+|....+ .+.|++.-....+. ++..+...|-+.|
T Consensus 230 ~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~----------v~~~~~~~l~~iL 299 (302)
T PF03016_consen 230 YMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVR----------VPEADLPELPEIL 299 (302)
T ss_pred HHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEE----------ECHHHHHHHHHHH
Confidence 4568999999999887777888899999999977765432 24555544434443 5666666665544
No 184
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.11 E-value=47 Score=30.98 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=63.5
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEec----cChHHHHHHH-----HhcCEEEEcC
Q 008488 414 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK----FNIPLAHMII-----AGADFILIPS 484 (564)
Q Consensus 414 ~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~----~~~~~~~~il-----~~ADv~v~PS 484 (564)
--|.|++.+.+....+.+.++-++|+.++..++..+.|...||+ +...+. ++.++...++ +.+|++++-
T Consensus 31 v~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~-l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg- 108 (172)
T PF03808_consen 31 VTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPG-LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG- 108 (172)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE-
Confidence 34899999999987667889999999888888888899999985 333332 3434444433 467998873
Q ss_pred CCCCCcHHHHHHH-----HcCCcEEEcCccccccccc
Q 008488 485 RFEPCGLIQLHAM-----RYGTVPIVASTGGLVDTVE 516 (564)
Q Consensus 485 ~~E~~gl~~lEAm-----a~G~PvI~s~~gg~~e~v~ 516 (564)
.|..-.|.. ...-+.|.-..||.-++..
T Consensus 109 ----lG~PkQE~~~~~~~~~l~~~v~i~vG~~~d~~a 141 (172)
T PF03808_consen 109 ----LGAPKQERWIARHRQRLPAGVIIGVGGAFDFLA 141 (172)
T ss_pred ----CCCCHHHHHHHHHHHHCCCCEEEEECchhhhhc
Confidence 444433322 2222226666677766654
No 185
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=64.11 E-value=57 Score=31.54 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=63.3
Q ss_pred EEEEecccc--ccCHHHHHHHHHhcccCCeEEEEEeCCCh---hhHHHHHHHHHhC-CCceEEEeccChHHHHHHHHhcC
Q 008488 405 IGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKK---PMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 405 i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvIvG~g~~---~~~~~l~~L~~~~-~~~v~~~~~~~~~~~~~il~~AD 478 (564)
++..|.... .-+.+.+.+.+..+...+.+++++.+... ++.+.+.+.-.++ +-.+.....++.+...+.+..||
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad 82 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD 82 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC
Confidence 444444443 44677777777777556788999987653 3333333333344 43344333333445556899999
Q ss_pred EEEEcCC--------CCCCcHH--HHHHHHcCCcEEEcCccc
Q 008488 479 FILIPSR--------FEPCGLI--QLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 479 v~v~PS~--------~E~~gl~--~lEAma~G~PvI~s~~gg 510 (564)
++++|-= +...++. +-++...|+|++.+..|.
T Consensus 83 ~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 83 VIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred EEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 9999841 1222322 445566799999888665
No 186
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=63.97 E-value=25 Score=36.64 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=56.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccCh------------HHHHHHHHhcCEEEE--cCCCCCCcHH---H
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI------------PLAHMIIAGADFILI--PSRFEPCGLI---Q 493 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~------------~~~~~il~~ADv~v~--PS~~E~~gl~---~ 493 (564)
.-.+-|+|-|. +-+.+.+..+.++-++..+..+.. ..+..+++.||++++ |..-|.-|+. .
T Consensus 142 gkTvGIiG~G~--IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGR--IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 44677777776 566666666666666776666422 336679999999975 4445776665 7
Q ss_pred HHHHHcCCcEEEcCcccccc
Q 008488 494 LHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (564)
+..|--|.-.|-+.-|++.|
T Consensus 220 ~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 220 LAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HhhCCCCeEEEECCCcceec
Confidence 77787888888888888654
No 187
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=62.06 E-value=1.4e+02 Score=28.79 Aligned_cols=91 Identities=10% Similarity=0.111 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHhcccC--CeEEEEEeCCC-hhhHHHHHHHH--HhCCCceEEEec-cChHHHHHHHHhcCEEEEcCCC
Q 008488 413 EQKGSDILAAAIPHFIKE--NVQIIVLGTGK-KPMEKQLEQLE--ILYPEKARGVAK-FNIPLAHMIIAGADFILIPSRF 486 (564)
Q Consensus 413 ~~KG~d~ll~A~~~l~~~--~v~lvIvG~g~-~~~~~~l~~L~--~~~~~~v~~~~~-~~~~~~~~il~~ADv~v~PS~~ 486 (564)
...-.+.+.+.+..+.+. .+.++.....+ ........... .....++..... .+..+...+++.+|++|-...+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH 267 (286)
T PF04230_consen 188 NEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH 267 (286)
T ss_pred hhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH
Confidence 444566667777776653 33333333322 22222222221 111223333333 3677777899999999988776
Q ss_pred CCCcHHHHHHHHcCCcEEEcCc
Q 008488 487 EPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 487 E~~gl~~lEAma~G~PvI~s~~ 508 (564)
..+=|+++|+|+|+-+.
T Consensus 268 -----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 -----GAILALSLGVPVIAISY 284 (286)
T ss_pred -----HHHHHHHcCCCEEEEec
Confidence 24448999999998653
No 188
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=59.99 E-value=27 Score=36.03 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=50.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc--------ChHHHHHHHHhcCEEEE--cCCCCC---CcHHHHHHH
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFILI--PSRFEP---CGLIQLHAM 497 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~--------~~~~~~~il~~ADv~v~--PS~~E~---~gl~~lEAm 497 (564)
+-.+-|+|.|. +-+.+.++...++.+|..+.+. ....+.++++.||++++ |..-|. ++-..++.|
T Consensus 145 gktvGIiG~G~--IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 145 GKKWGIIGLGT--IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCEEEEECCCH--HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 34455666655 4444444444444444443322 12245679999999976 333354 455699999
Q ss_pred HcCCcEEEcCcccccc
Q 008488 498 RYGTVPIVASTGGLVD 513 (564)
Q Consensus 498 a~G~PvI~s~~gg~~e 513 (564)
--|.-.|-+.-|++.|
T Consensus 223 k~~a~lIN~aRG~vVD 238 (311)
T PRK08410 223 KDGAILINVGRGGIVN 238 (311)
T ss_pred CCCeEEEECCCccccC
Confidence 9999999998888664
No 189
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=58.98 E-value=59 Score=30.37 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=49.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChH------------HHHHHHHhcCEEEEcCC--CCC---CcHHH
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP------------LAHMIIAGADFILIPSR--FEP---CGLIQ 493 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~------------~~~~il~~ADv~v~PS~--~E~---~gl~~ 493 (564)
+-.+-|+|.|. +-+.+.++...++-+|..+.+...+ .+.++++.||++++.-. -|. ++-..
T Consensus 36 g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 36 GKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 44566666665 4445555555555555555555322 23468999999986432 233 56669
Q ss_pred HHHHHcCCcEEEcCcccccc
Q 008488 494 LHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (564)
++.|--|.-+|.+.-|++.|
T Consensus 114 l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-
T ss_pred eeccccceEEEeccchhhhh
Confidence 99999999999998887554
No 190
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=58.74 E-value=11 Score=37.69 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
++||||+.+..-. .+.-+..|.++|.+.| +|.|++|..+
T Consensus 4 ~~M~ILltNDDGi-------~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 4 KKPHILVCNDDGI-------EGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCEEEEECCCCC-------CCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 5799998887522 1223777899998888 8999999754
No 191
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=58.13 E-value=18 Score=32.58 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|+...- +.|-...++..+.+.+.+.|++|.++-..
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 99999997532 35667777788888888899999999765
No 192
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=57.99 E-value=75 Score=30.13 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecC
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~N 355 (564)
..+.+..+...|.|.+.|+..++.+.+ .|++.+ ++.+.-|
T Consensus 140 ~~~~r~~l~~f~~i~aqs~~da~r~~~---lG~~~~------~v~v~Gn 179 (186)
T PF04413_consen 140 PFLFRPLLSRFDRILAQSEADAERFRK---LGAPPE------RVHVTGN 179 (186)
T ss_dssp -HHHHHHGGG-SEEEESSHHHHHHHHT---TT-S--------SEEE---
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCcc------eEEEeCc
Confidence 356788899999999999999999997 787755 6666554
No 193
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=55.95 E-value=19 Score=34.38 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=30.3
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.||++.|++. ...-|-.....+|+.+|++.|++|.+|=.+
T Consensus 16 ~~kvI~v~s~----kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSV----KPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4888877754 123456678899999999999999988543
No 194
>PRK06932 glycerate dehydrogenase; Provisional
Probab=55.46 E-value=34 Score=35.39 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=49.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccC-------hHHHHHHHHhcCEEEE--cCCCCC---CcHHHHHHHHc
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN-------IPLAHMIIAGADFILI--PSRFEP---CGLIQLHAMRY 499 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~-------~~~~~~il~~ADv~v~--PS~~E~---~gl~~lEAma~ 499 (564)
-.+.|+|-|. +-+.+.++...++.++..+.+.. ...+.++++.||++++ |..-|. ++-..++.|--
T Consensus 148 ktvgIiG~G~--IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ 225 (314)
T PRK06932 148 STLGVFGKGC--LGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225 (314)
T ss_pred CEEEEECCCH--HHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC
Confidence 3555666555 34444444444444444332211 1235679999999986 333344 45669999999
Q ss_pred CCcEEEcCcccccc
Q 008488 500 GTVPIVASTGGLVD 513 (564)
Q Consensus 500 G~PvI~s~~gg~~e 513 (564)
|.-+|-+.-|++.|
T Consensus 226 ga~lIN~aRG~~Vd 239 (314)
T PRK06932 226 TAFLINTGRGPLVD 239 (314)
T ss_pred CeEEEECCCccccC
Confidence 99999998888654
No 195
>PLN00016 RNA-binding protein; Provisional
Probab=55.04 E-value=18 Score=38.28 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=30.3
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||++++.. .||.|-+-..|++.|.++||+|++++..
T Consensus 51 ~~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 35789888653 4666666667999999999999999865
No 196
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=53.95 E-value=1.5e+02 Score=28.47 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=58.1
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCC---hhhHHHHHHHHHhCCCceEEEecc---ChHHHHHHHHhcCEEEEcC--
Q 008488 413 EQKGSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPEKARGVAKF---NIPLAHMIIAGADFILIPS-- 484 (564)
Q Consensus 413 ~~KG~d~ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~L~~~~~~~v~~~~~~---~~~~~~~il~~ADv~v~PS-- 484 (564)
+....+.+-+.+.+....+.+++++.+.. ..+-+...+.-.+++-++..+... +.++..+.+..||+++++-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 11 KAHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred ccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCc
Confidence 34445555555555533567788887654 222333333333444334433333 3466667999999999863
Q ss_pred ------CCCC--CcHHHHHHHHcCCcEEEcCcccc
Q 008488 485 ------RFEP--CGLIQLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 485 ------~~E~--~gl~~lEAma~G~PvI~s~~gg~ 511 (564)
.+.. .--.+.+..+.|+|++.++.|.+
T Consensus 91 ~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 91 QLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 2222 22247788888999999987763
No 197
>PRK09271 flavodoxin; Provisional
Probab=53.16 E-value=24 Score=32.48 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|||+++-. +.+|-.+.+...++..|.+.|++|.+.-
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 78888775 3579999999999999999999987654
No 198
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=52.77 E-value=15 Score=37.83 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=27.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhh--hHHHHHhCCCeEEEEeeCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGG--LPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~--La~aLa~~Gh~V~vitp~~ 128 (564)
|||+|++. .||+|+-.-. +|.+++++|++|.+++...
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 89999996 3777665555 7777899999999998653
No 199
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.73 E-value=1.2e+02 Score=29.50 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHH-HHHhcCEEEEcCCC
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRF 486 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~-il~~ADv~v~PS~~ 486 (564)
..+..++.++.+.+-.++.+=++-..++-.+.++.+.+++++...+-+.. +.+++.. +-++||+++.|...
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~ 97 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLT 97 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCC
Confidence 45555666665554445555555444456677777777777655666555 4444443 55677888877653
No 200
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=52.41 E-value=20 Score=33.05 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
||+|++-+ ++.|-.......++..|.+.||+|.+.-.
T Consensus 1 Mk~LIlYs-----tr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYS-----TRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEe-----cCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 88888876 46788999999999999999999998744
No 201
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=52.21 E-value=22 Score=40.76 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.++++|++|+.- .+|+. +|.+|+++|++|.|+=.
T Consensus 79 ~~~~~VlIVGgG------IaGLa-----lAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGG------IGGLV-----FALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCC------HHHHH-----HHHHHHhcCCeEEEEec
Confidence 457999999963 46766 88999999999999954
No 202
>PRK06179 short chain dehydrogenase; Provisional
Probab=51.93 E-value=59 Score=32.08 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+||+| ..+++.|+++|++|.+++.+
T Consensus 13 sg~iG---~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 13 SSGIG---RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45655 56888999999999888764
No 203
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=51.41 E-value=20 Score=36.83 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+..|||++|+. |++|.. ++..|++.||+|++++..
T Consensus 3 ~~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 45699999984 666643 667788899999999875
No 204
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=50.90 E-value=63 Score=32.16 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEE--EeccChHHHHHH-----HHhcCEEEEcCCCCC
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG--VAKFNIPLAHMI-----IAGADFILIPSRFEP 488 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~--~~~~~~~~~~~i-----l~~ADv~v~PS~~E~ 488 (564)
|.|++.+.++...+...++.++|+.+...++..+.+..+|+-++.+ .+.|+.++...+ -.++|++++-
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~Vg----- 164 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVA----- 164 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEE-----
Confidence 9999999888776567899999998877888888888888534432 344443332222 2367998873
Q ss_pred CcHHHHHHH-----Hc-CCcEEEcCccccccccc
Q 008488 489 CGLIQLHAM-----RY-GTVPIVASTGGLVDTVE 516 (564)
Q Consensus 489 ~gl~~lEAm-----a~-G~PvI~s~~gg~~e~v~ 516 (564)
.|..-.|-. .. +.+++ -..||.-|+..
T Consensus 165 lG~PkQE~~~~~~~~~~~~~v~-~gvGg~fD~~a 197 (243)
T PRK03692 165 MGSPKQEIFMRDCRLVYPDALY-MGVGGTYDVFT 197 (243)
T ss_pred CCCcHHHHHHHHHHHhCCCCEE-EEeCeEEEEec
Confidence 333322222 22 44443 44677666653
No 205
>PRK06487 glycerate dehydrogenase; Provisional
Probab=50.54 E-value=38 Score=35.07 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=50.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc------ChHHHHHHHHhcCEEEEc--CCCCC---CcHHHHHHHHc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF------NIPLAHMIIAGADFILIP--SRFEP---CGLIQLHAMRY 499 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~------~~~~~~~il~~ADv~v~P--S~~E~---~gl~~lEAma~ 499 (564)
+-.+-|+|-|. +-+.+.++...++.++..+... ....+.++++.||++++- ..-|. ++-..+..|--
T Consensus 148 gktvgIiG~G~--IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ 225 (317)
T PRK06487 148 GKTLGLLGHGE--LGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225 (317)
T ss_pred CCEEEEECCCH--HHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC
Confidence 34556666655 4444444444444444433322 112356799999999863 33343 56669999999
Q ss_pred CCcEEEcCcccccc
Q 008488 500 GTVPIVASTGGLVD 513 (564)
Q Consensus 500 G~PvI~s~~gg~~e 513 (564)
|.-+|-+.-|++.|
T Consensus 226 ga~lIN~aRG~vVd 239 (317)
T PRK06487 226 GALLINTARGGLVD 239 (317)
T ss_pred CeEEEECCCccccC
Confidence 99999999888665
No 206
>PRK05866 short chain dehydrogenase; Provisional
Probab=49.01 E-value=31 Score=35.02 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=24.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..+++|++++. .||+| ..+++.|+++|++|.++..+
T Consensus 38 ~~~k~vlItGa-------sggIG---~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 38 LTGKRILLTGA-------SSGIG---EAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCCEEEEeCC-------CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 34455655553 46665 45788899999999888765
No 207
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=48.15 E-value=20 Score=35.65 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+.. |=.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 899988764 222335788999999998 9999999754
No 208
>PRK06756 flavodoxin; Provisional
Probab=48.02 E-value=32 Score=31.01 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=31.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++|-. +.+|-.+.++..+++.|.+.|++|.++-.
T Consensus 2 mkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 78888765 34799999999999999999999987754
No 209
>PLN03007 UDP-glucosyltransferase family protein
Probab=47.94 E-value=45 Score=36.68 Aligned_cols=97 Identities=9% Similarity=-0.097 Sum_probs=52.4
Q ss_pred ccEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEE-EeCCCh------hhHHHHHHHHHhCCCceEEEeccChHHHHH
Q 008488 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIV-LGTGKK------PMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (564)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvI-vG~g~~------~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~ 472 (564)
..+.+..|.... .+.+..++++++.+ +..+++ ++.... .+-+.+++.. .+.+++.....++.+
T Consensus 286 svvyvsfGS~~~~~~~~~~~~~~~l~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~--~~~g~~v~~w~PQ~~--- 357 (482)
T PLN03007 286 SVIYLSFGSVASFKNEQLFEIAAGLEGS---GQNFIWVVRKNENQGEKEEWLPEGFEERT--KGKGLIIRGWAPQVL--- 357 (482)
T ss_pred ceEEEeecCCcCCCHHHHHHHHHHHHHC---CCCEEEEEecCCcccchhhcCCHHHHHHh--ccCCEEEecCCCHHH---
Confidence 356777787643 44555666666655 444443 342110 0111111111 123465555556543
Q ss_pred HHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 473 il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
+++.+++-++-+. +--.+++||+++|+|+|+--.
T Consensus 358 iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 358 ILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred HhccCccceeeec--CcchHHHHHHHcCCCeeeccc
Confidence 7888876333222 224579999999999998754
No 210
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=47.89 E-value=18 Score=37.33 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+|+-. |+....--.+....|..+..++||+|.++.|.
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 89999984 43333333445777999999999999999987
No 211
>PLN02670 transferase, transferring glycosyl groups
Probab=47.87 E-value=78 Score=34.80 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=60.0
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCC----hh-hHHHHHHHHHhCCC-ceEEEeccChHHHHHH
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGK----KP-MEKQLEQLEILYPE-KARGVAKFNIPLAHMI 473 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~----~~-~~~~l~~L~~~~~~-~v~~~~~~~~~~~~~i 473 (564)
..+.+..|.+. +.+-+..+..+++.. ...|+.+=..+ .+ ....-+...++..+ .+......++.+ +
T Consensus 279 sVvyvsfGS~~~l~~~q~~ela~gl~~s---~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~---I 352 (472)
T PLN02670 279 SVVYVALGTEASLRREEVTELALGLEKS---ETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVK---I 352 (472)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHC---CCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHH---H
Confidence 35566677764 344566666666666 22444432211 00 00000111111111 133334445543 7
Q ss_pred HHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC----ccccccccccCcceeEee
Q 008488 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLVDTVEEGFTGFQMG 525 (564)
Q Consensus 474 l~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~----~gg~~e~v~~g~~G~l~~ 525 (564)
++...+-.+-+. +--.+++||+++|+|+|+-- .......+.+-+.|..+.
T Consensus 353 L~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~ 406 (472)
T PLN02670 353 LSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVP 406 (472)
T ss_pred hcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEee
Confidence 877777433332 23357999999999999874 334555565667887753
No 212
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=47.85 E-value=45 Score=31.33 Aligned_cols=34 Identities=32% Similarity=0.631 Sum_probs=24.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCe--EEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR--VMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~--V~vitp~ 127 (564)
|||+|+.+. . +.....+..++.+.+++ +..+.++
T Consensus 1 mrI~~~~Sg------~---~~~~~~~l~~l~~~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSG------S---GSFLKALLEALKARGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESS------S---SHHHHHHHHHHHTTSSEEEEEEEEES
T ss_pred CEEEEEEcC------C---CHHHHHHHHHHHhCCCCceEEEEecc
Confidence 899999853 1 24677788899999997 4444443
No 213
>PLN02167 UDP-glycosyltransferase family protein
Probab=45.03 E-value=63 Score=35.47 Aligned_cols=112 Identities=14% Similarity=0.024 Sum_probs=56.9
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEE-EeCCChhh---HHHH-HHHHHhCCCceEEEeccChHHHHHHH
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIV-LGTGKKPM---EKQL-EQLEILYPEKARGVAKFNIPLAHMII 474 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvI-vG~g~~~~---~~~l-~~L~~~~~~~v~~~~~~~~~~~~~il 474 (564)
.++.+..|.+. ..+-+..++++++.+ +.++++ ++...... ...+ +...++..++.......++.+ ++
T Consensus 281 svvyvsfGS~~~~~~~~~~ela~~l~~~---~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~---iL 354 (475)
T PLN02167 281 SVVFLCFGSLGSLPAPQIKEIAQALELV---GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE---IL 354 (475)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC---CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH---Hh
Confidence 35666778763 344466677777766 445554 33211000 0000 111111112233333334443 67
Q ss_pred HhcC--EEEEcCCCCCCc-HHHHHHHHcCCcEEEcCccc----ccc-ccccCcceeEe
Q 008488 475 AGAD--FILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVD-TVEEGFTGFQM 524 (564)
Q Consensus 475 ~~AD--v~v~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e-~v~~g~~G~l~ 524 (564)
+... +||. .|| .+.+||+++|+|+|+--..+ ... +++.-+.|..+
T Consensus 355 ~h~~vg~fvt-----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~ 407 (475)
T PLN02167 355 AHKAIGGFVS-----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVEL 407 (475)
T ss_pred cCcccCeEEe-----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEe
Confidence 7754 4553 243 37999999999999874332 332 24444567764
No 214
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=44.37 E-value=67 Score=33.43 Aligned_cols=44 Identities=32% Similarity=0.477 Sum_probs=34.7
Q ss_pred HHHHHHhcCEEEE--cCCCCCCcH---HHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILI--PSRFEPCGL---IQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~--PS~~E~~gl---~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++ |...|...+ ..++.|--|.-.|-+.-|++.|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 4569999999975 555566544 4999999999999999888665
No 215
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=43.96 E-value=1.1e+02 Score=33.28 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=29.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.++|++|. +| .+ |--.=+-+|++.|+.+|+.|+++++..
T Consensus 7 ~~HVvlvP---fp--aq-GHi~P~l~LAk~La~~G~~VT~v~T~~ 45 (451)
T PLN02410 7 RRRVVLVP---VP--AQ-GHISPMMQLAKTLHLKGFSITIAQTKF 45 (451)
T ss_pred CCEEEEEC---CC--cc-ccHHHHHHHHHHHHcCCCEEEEEeCcc
Confidence 56788776 33 24 444466779999999999999998764
No 216
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=43.13 E-value=31 Score=35.28 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=28.9
Q ss_pred CCCceEEEEEeeccCccccchHHH--HhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.+|||+-|+ . .||+|. ...+|+.+|+++|++|.+|=..
T Consensus 1 ~~~~~~iai~-~------KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAFY-G------KGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CCcceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3578877664 2 366654 5688999999999999999543
No 217
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=42.71 E-value=84 Score=32.65 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=33.3
Q ss_pred HHHHHHhcCEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++ |..-|. ++-..++.|--|.-.|-+.-|++.|
T Consensus 194 l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 194 LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 4568999999876 333343 4556999999999999998888664
No 218
>PLN02928 oxidoreductase family protein
Probab=42.42 E-value=63 Score=33.91 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCEEEEcC--CCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 468 PLAHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
..+.++++.||++++.- .-|. ++-..+..|--|.-+|-+.-|++.|
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 34567999999998643 2343 4556888998999999988887654
No 219
>PLN02306 hydroxypyruvate reductase
Probab=42.32 E-value=65 Score=34.41 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHhcCEEEE-cC-CCCCCcH---HHHHHHHcCCcEEEcCcccccc
Q 008488 469 LAHMIIAGADFILI-PS-RFEPCGL---IQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 469 ~~~~il~~ADv~v~-PS-~~E~~gl---~~lEAma~G~PvI~s~~gg~~e 513 (564)
.+.++++.||++++ .+ .-|..++ ..++.|--|.-.|-+.-|++.|
T Consensus 229 ~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 229 SMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred CHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 46679999999986 23 2355444 4899999999999999888765
No 220
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.87 E-value=34 Score=35.08 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.+|||+|++. | .+-..++..|++.||+|.++..+
T Consensus 2 ~~~m~I~iiG~--------G---~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGA--------G---AWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECc--------c---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 35799999984 2 23445889999999999988765
No 221
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=41.56 E-value=30 Score=33.53 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=24.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|+ |.|.+-..|+..|++.||+|+++..+
T Consensus 1 MkI~IIG----------G~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLG----------GTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEc----------CCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 7888774 22334456888999999999988654
No 222
>PRK09739 hypothetical protein; Provisional
Probab=41.56 E-value=52 Score=31.33 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||++|... |. ..+=....+..+.+++.+.||+|.++-..
T Consensus 2 ~mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 2 QSMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 36899999985 53 22334456666778888899999988543
No 223
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=41.46 E-value=68 Score=34.15 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=40.9
Q ss_pred HHHHHHhcCEEE--EcCCCC----CC---cHHHHHHHHcCCcEEEcCcccccc------ccccCc-ceeEeeccccc
Q 008488 470 AHMIIAGADFIL--IPSRFE----PC---GLIQLHAMRYGTVPIVASTGGLVD------TVEEGF-TGFQMGSFSVD 530 (564)
Q Consensus 470 ~~~il~~ADv~v--~PS~~E----~~---gl~~lEAma~G~PvI~s~~gg~~e------~v~~g~-~G~l~~~~~~~ 530 (564)
+.++++.||+++ +|...+ .. +-..++.|.-|.-+|-+.-|++.| .++.|. .|...+-+..|
T Consensus 161 L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~E 237 (378)
T PRK15438 161 LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGE 237 (378)
T ss_pred HHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCC
Confidence 557899999998 454433 44 445889999999999998888655 223333 25555544444
No 224
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=1.1e+02 Score=29.83 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=58.8
Q ss_pred ccEEEEEec-cccccCHHHHHHHHHhcccCCe--EEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 402 IPVIGFIGR-LEEQKGSDILAAAIPHFIKENV--QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 402 ~~~i~~iGr-l~~~KG~d~ll~A~~~l~~~~v--~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
..+++|+|. +.+.+. .|++.+++|++.+| .+|..|....+ .+.+.......+++ =.++.
T Consensus 108 ~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~~~~-~e~l~~fida~N~~---------------~~gsh 169 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEAENN-TEKLFEFIDALNGK---------------GDGSH 169 (259)
T ss_pred eEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEecccccc-HHHHHHHHHHhcCC---------------CCCce
Confidence 357899998 444333 66777777766544 45555544321 23333333322211 12345
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++.+|+- + +|+=...-.|++.-+.|+..--+.-.++-|-|| |+|.+--+||.+|+.
T Consensus 170 lv~Vppg----~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fg--------vdp~~DPELAlALRl 225 (259)
T KOG2884|consen 170 LVSVPPG----P--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFG--------VDPEDDPELALALRL 225 (259)
T ss_pred EEEeCCC----c--cHHHHhhcCceeccCcccccccccccccccccC--------CCcccCHHHHHHHHh
Confidence 5555532 1 344444567777776544332222222344444 677766667777643
No 225
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.25 E-value=2.5e+02 Score=27.12 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHH-HHHhcCEEEEcCCCCC-----
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRFEP----- 488 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~-il~~ADv~v~PS~~E~----- 488 (564)
..+..++.++.+.+-.++.+=+--..+...+.++++.+++++-+.+.+.. +.+++.. +-++|++++.|...+.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a 93 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAA 93 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 45555555555555344433333223335667777777777655666666 4444443 5567788887765321
Q ss_pred ------------CcHHHHHHHHcCCcEE
Q 008488 489 ------------CGLIQLHAMRYGTVPI 504 (564)
Q Consensus 489 ------------~gl~~lEAma~G~PvI 504 (564)
.+.-+.+|+.+|.-+|
T Consensus 94 ~~~~i~~iPG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 94 NDSDVPLLPGAATPSEVMALREEGYTVL 121 (201)
T ss_pred HHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 1444888888888777
No 226
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=41.10 E-value=1.9e+02 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=43.3
Q ss_pred ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 458 ~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
.+.+....+.++..+.+..+|+++..+.. .+.-.+++++ -++..|++...|...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 47777777888888899999999985543 5788899887 8889999988887543
No 227
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=41.01 E-value=39 Score=33.61 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=27.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
||++.|.+ + ...-|..++.-+|+.+|++.|..|.+|=.
T Consensus 1 M~~iai~s---~-kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVS---P-KGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEec---C-CCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 77777664 2 12234456788899999999999999844
No 228
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=40.96 E-value=2.7e+02 Score=26.95 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHH-HHHhcCEEEEcCCCCC-----
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRFEP----- 488 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~-il~~ADv~v~PS~~E~----- 488 (564)
..+..++..+.+.+-.++++=+--..+...+.++++.+++++-..+-+.. +.+++.. +-++|+++|.|...+.
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHA 97 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 44555555555544344444443333445667777777777555566665 4444443 5567788877765311
Q ss_pred ------------CcHHHHHHHHcCCcEE
Q 008488 489 ------------CGLIQLHAMRYGTVPI 504 (564)
Q Consensus 489 ------------~gl~~lEAma~G~PvI 504 (564)
.+.-+.+|+.+|..+|
T Consensus 98 ~~~~i~~iPG~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 98 QDHGIPIIPGVATPSEIMLALELGITAL 125 (204)
T ss_pred HHcCCcEECCCCCHHHHHHHHHCCCCEE
Confidence 1333777777777665
No 229
>PRK05246 glutathione synthetase; Provisional
Probab=40.92 E-value=26 Score=36.16 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=31.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+|+-. |+....--......|+++..++||+|.+++|.
T Consensus 2 ~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 2 MKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred ceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 89999994 44333333445677999999999999999987
No 230
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=40.79 E-value=30 Score=34.67 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=27.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+..-.. .-| +..|+++|++ +|+|+|++|..+
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPENQ 37 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCCC
Confidence 899998876321 122 7778888876 579999999754
No 231
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=40.72 E-value=30 Score=34.67 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=27.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCc
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~ 130 (564)
||||+.+..-. .+.-+..|.++|++ +|+|.|++|..+|
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-------TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-------CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 89998887522 12236778888875 5799999998553
No 232
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=40.49 E-value=2e+02 Score=26.79 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHhccc--CCeEEEEEeCCChhhHH-HHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHH
Q 008488 419 ILAAAIPHFIK--ENVQIIVLGTGKKPMEK-QLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 495 (564)
Q Consensus 419 ~ll~A~~~l~~--~~v~lvIvG~g~~~~~~-~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lE 495 (564)
..+++++++.. .+-+++|+|.|.- ... ..+.|.. .+-++....+. .+++.+.+..||++|...-... +.--|
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~-~G~~~a~~L~~-~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~~~--ii~~~ 104 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNI-VGKPLAALLLN-RNATVTVCHSK-TKNLKEHTKQADIVIVAVGKPG--LVKGD 104 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHHhh-CCCEEEEEECC-chhHHHHHhhCCEEEEcCCCCc--eecHH
Confidence 44555555532 5788999999861 123 3333333 23245544443 3455679999999998876532 33444
Q ss_pred HHHcCCcEE
Q 008488 496 AMRYGTVPI 504 (564)
Q Consensus 496 Ama~G~PvI 504 (564)
.+.-|+.+|
T Consensus 105 ~~~~~~viI 113 (168)
T cd01080 105 MVKPGAVVI 113 (168)
T ss_pred HccCCeEEE
Confidence 444454443
No 233
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=40.16 E-value=59 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=29.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCC-CeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G-h~V~vitp~ 127 (564)
||+.++... +|+.+ -.......+++++.+.| ++|.++...
T Consensus 1 m~~~Ivvt~-ppYg~--q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPYGT--ESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCCcc--HHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788888876 77622 34556888999999997 567777644
No 234
>PLN02173 UDP-glucosyl transferase family protein
Probab=39.79 E-value=1.6e+02 Score=32.15 Aligned_cols=113 Identities=8% Similarity=0.009 Sum_probs=58.7
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhH-HHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPME-KQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~-~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
.+.+..|.... -..+.+.+.+.-|...++-+++-......+. ..+++. .++++....+.++.+ +++...+-.
T Consensus 266 vvyvsfGS~~~-~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~---~~~~~~i~~W~PQ~~---iL~H~~v~~ 338 (449)
T PLN02173 266 VVYIAFGSMAK-LSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETV---DKDKSLVLKWSPQLQ---VLSNKAIGC 338 (449)
T ss_pred eEEEEeccccc-CCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhh---cCCceEEeCCCCHHH---HhCCCccce
Confidence 56667787642 2334444444444333444444321111111 112211 134465555546443 788877444
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-cceeEe
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEEG-FTGFQM 524 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~g-~~G~l~ 524 (564)
+-+. +-.++++||+++|+|+|+--. .-....+.+. +.|.-+
T Consensus 339 FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v 384 (449)
T PLN02173 339 FMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRV 384 (449)
T ss_pred EEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEE
Confidence 4333 334679999999999998743 3355555553 466654
No 235
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=39.61 E-value=78 Score=31.62 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~ 511 (564)
+.+++..+|+++.-+.-+...-.+..|+..|+|+|+..+|-.
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 334566789988666545444557778888999987765544
No 236
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=39.60 E-value=53 Score=31.55 Aligned_cols=37 Identities=24% Similarity=0.071 Sum_probs=28.6
Q ss_pred CCceEEEEEeeccCccccchHHHHh--hhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~--~~La~aLa~~Gh~V~vitp~ 127 (564)
.++||++-. +||.+.+- ..|.+.|.+.|++|.++...
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 357777655 47777664 68999999999999988764
No 237
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=39.40 E-value=35 Score=31.46 Aligned_cols=37 Identities=41% Similarity=0.505 Sum_probs=30.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
+++||++|+. +-+.+++.+...+++.|.+|.+++|..
T Consensus 1 ~gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3689999983 224589999999999999999999974
No 238
>PRK13243 glyoxylate reductase; Reviewed
Probab=39.38 E-value=1.1e+02 Score=31.78 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -|. ++-..+++|.-|.-+|-+..|++.+
T Consensus 198 l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 198 LEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred HHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcC
Confidence 4568999999986433 233 4455889999999999998888654
No 239
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=39.24 E-value=97 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=24.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCC--eEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh--~V~vitp~ 127 (564)
|||+++.+ |-|..+..+..++.+.++ +|.++.++
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEEC
Confidence 78888885 335567788888887765 66665555
No 240
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=39.02 E-value=32 Score=34.32 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=28.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+-+.. |=.+.-+..|+++|+ .+++|+|++|..+
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCC
Confidence 899988875 222334777889998 8899999999754
No 241
>PRK10037 cell division protein; Provisional
Probab=38.78 E-value=42 Score=33.16 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=27.0
Q ss_pred ceEEEEEeeccCccccchHHHH--hhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~--~~~La~aLa~~Gh~V~vitp 126 (564)
|||+-|.+. .||.|+- ..+|+.+|+++|++|.+|=.
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 676656543 4666654 57899999999999999943
No 242
>PLN02572 UDP-sulfoquinovose synthase
Probab=38.64 E-value=45 Score=36.23 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
+.|||++.+. +|++| ..|++.|.++|++|.++.
T Consensus 46 ~~k~VLVTGa-------tGfIG---s~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGG-------DGYCG---WATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECC-------CcHHH---HHHHHHHHHCCCeEEEEe
Confidence 4577765553 35555 458899999999999874
No 243
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=38.62 E-value=1.9e+02 Score=29.13 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF 465 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~ 465 (564)
.+++.+++|-. ....+.|.-++ ....+..+.-+..|.. ++++.+|+-.+.+..-..+++..++.|+ +..+...
T Consensus 22 Ae~l~~~Yg~~---~I~h~tyPdnf--~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpD-Il~ia~~ 95 (275)
T PF12683_consen 22 AEELIKKYGDV---MIKHVTYPDNF--MSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPD-ILLIAGE 95 (275)
T ss_dssp HHHHHHHHHHH---EEEEEE--TTG--GGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TT-SEEEESS
T ss_pred HHHHHHHhCcc---eEEEEeCCCcc--cchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCC-eEEEcCC
Confidence 35566777641 11223333333 4458888888777765 8999999988887788899999998887 6667777
Q ss_pred ChHHHHHHHHhcCEEEEcC
Q 008488 466 NIPLAHMIIAGADFILIPS 484 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS 484 (564)
+.++...+-..||+.+.+.
T Consensus 96 ~~EDp~~i~~~aDi~~~~D 114 (275)
T PF12683_consen 96 PHEDPEVISSAADIVVNPD 114 (275)
T ss_dssp --S-HHHHHHHSSEEEE--
T ss_pred CcCCHHHHhhccCeEeccc
Confidence 7777777888999999854
No 244
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=38.57 E-value=85 Score=34.54 Aligned_cols=113 Identities=10% Similarity=-0.108 Sum_probs=58.4
Q ss_pred ccEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEEEeCCCh----hhHHHHHHHHHhC-CCceEEEeccChHHHHHHH
Q 008488 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKK----PMEKQLEQLEILY-PEKARGVAKFNIPLAHMII 474 (564)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvIvG~g~~----~~~~~l~~L~~~~-~~~v~~~~~~~~~~~~~il 474 (564)
..+.+..|.+.. .+-+..++++++.. +..++++-..+. .....-+.+.++. +.+++.....+... ++
T Consensus 284 svVyvsfGS~~~~~~~~~~ela~gL~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~---vL 357 (477)
T PLN02863 284 KVVYVCFGSQVVLTKEQMEALASGLEKS---GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVA---IL 357 (477)
T ss_pred ceEEEEeeceecCCHHHHHHHHHHHHhC---CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHH---Hh
Confidence 356666777642 23366666666655 455554432110 0000111111111 12354445556543 67
Q ss_pred Hh--cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----ccccccccc-CcceeEe
Q 008488 475 AG--ADFILIPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEE-GFTGFQM 524 (564)
Q Consensus 475 ~~--ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~-g~~G~l~ 524 (564)
+. .++||. -+--.+.+||+++|+|+|+--. .-....+.+ -+.|.-+
T Consensus 358 ~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~ 410 (477)
T PLN02863 358 SHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRV 410 (477)
T ss_pred cCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEe
Confidence 76 456663 1333579999999999998743 334444433 3677754
No 245
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=38.44 E-value=98 Score=22.66 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=41.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+.+.+.|.-+..-++.++++....++++... ++ ...+.+|.+..... ....+|...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~--~~--------~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSS--VS--------KKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecc--cc--------CCceEEEECCCCCc--hHHHHHHHcCCeEecHH
Confidence 4677888653345778888888877655422 12 46677777755321 12778889999988654
No 246
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=38.15 E-value=35 Score=34.42 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=27.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+..-. .+.-+..|.++|.+.| +|+|++|..+
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 89998887522 1233777889998887 8999999754
No 247
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=38.07 E-value=3.4e+02 Score=26.97 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=56.2
Q ss_pred EeccccccCHHHHHHHHHhccc-CCeEEEEEeCCC---hhhHHHHHHHHHhCCC-ceEEEecc-----ChHHHHHHHHhc
Q 008488 408 IGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK---KPMEKQLEQLEILYPE-KARGVAKF-----NIPLAHMIIAGA 477 (564)
Q Consensus 408 iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~---~~~~~~l~~L~~~~~~-~v~~~~~~-----~~~~~~~il~~A 477 (564)
+|.=+...+-..+.+.+-++.. ++.+++++.+.. .++.+...+.-.+++- .+..+.-. +.+...+.+..|
T Consensus 4 iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~a 83 (250)
T TIGR02069 4 IGGAEDKVGDREILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNA 83 (250)
T ss_pred EeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhC
Confidence 3333333344446665544443 566788876533 2222233333233442 23322221 223445678899
Q ss_pred CEEEEcC--------CCCCCcH--HHHHHHHcCCcEEEcCcccc
Q 008488 478 DFILIPS--------RFEPCGL--IQLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 478 Dv~v~PS--------~~E~~gl--~~lEAma~G~PvI~s~~gg~ 511 (564)
|++.+.- .++..++ .+-++...|+|++.++.|.+
T Consensus 84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 9988752 2344454 35578889999999988875
No 248
>PLN02210 UDP-glucosyl transferase
Probab=37.62 E-value=1.6e+02 Score=32.15 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=57.8
Q ss_pred ccEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEE-EeCCC-hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIV-LGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvI-vG~g~-~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
..+++..|.+.. ..-...+..+++.. +.++++ ++... ......+++... +++.......++.+ +++.+
T Consensus 270 svvyvsfGS~~~~~~~~~~e~a~~l~~~---~~~flw~~~~~~~~~~~~~~~~~~~--~~~g~v~~w~PQ~~---iL~h~ 341 (456)
T PLN02210 270 SVVYISFGSMLESLENQVETIAKALKNR---GVPFLWVIRPKEKAQNVQVLQEMVK--EGQGVVLEWSPQEK---ILSHM 341 (456)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHhC---CCCEEEEEeCCccccchhhHHhhcc--CCCeEEEecCCHHH---HhcCc
Confidence 356677787643 22244444444443 555554 34221 111122222211 12233333335443 78888
Q ss_pred C--EEEEcCCCCCCc-HHHHHHHHcCCcEEEcCcc----cccccccc-CcceeEee
Q 008488 478 D--FILIPSRFEPCG-LIQLHAMRYGTVPIVASTG----GLVDTVEE-GFTGFQMG 525 (564)
Q Consensus 478 D--v~v~PS~~E~~g-l~~lEAma~G~PvI~s~~g----g~~e~v~~-g~~G~l~~ 525 (564)
. +||. .|| .+++||+++|+|+|+--.. -....+.+ -+.|..+.
T Consensus 342 ~vg~Fit-----H~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~ 392 (456)
T PLN02210 342 AISCFVT-----HCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMR 392 (456)
T ss_pred CcCeEEe-----eCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEe
Confidence 7 5553 233 4699999999999987543 35555554 46787653
No 249
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=37.58 E-value=51 Score=29.42 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=28.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMT 123 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~v 123 (564)
|||+++-. +.+|-...++..++..|.+.|++|.+
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78877764 35788999999999999999999874
No 250
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=37.49 E-value=52 Score=33.32 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|||++++.. | .+-..|..+|.++|++|..++
T Consensus 1 MriLI~Gas-------G---~lG~~l~~~l~~~~~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGAS-------G---FLGSALARALKERGYEVIATS 31 (286)
T ss_dssp EEEEEETTT-------S---HHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEECCC-------C---HHHHHHHHHHhhCCCEEEEeC
Confidence 899988753 2 233457788888998877764
No 251
>PLN02207 UDP-glycosyltransferase
Probab=36.76 E-value=1.3e+02 Score=33.02 Aligned_cols=115 Identities=9% Similarity=-0.118 Sum_probs=58.2
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEE-eCCChhhHHHH-HHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQL-EQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l-~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
..+.+..|... +.+-...++.+++.+ ..+|+.+ ........+.+ +...++.+++.....+.++.+ +++..
T Consensus 276 sVVyvSfGS~~~~~~~q~~ela~~l~~~---~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~---IL~H~ 349 (468)
T PLN02207 276 SVVFLCFGSMGRLRGPLVKEIAHGLELC---QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVE---ILAHK 349 (468)
T ss_pred cEEEEEeccCcCCCHHHHHHHHHHHHHC---CCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHH---Hhccc
Confidence 35666677764 344466677777766 3344433 32110000000 222222334454444445544 67776
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----cccccccc-CcceeEe
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEE-GFTGFQM 524 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~-g~~G~l~ 524 (564)
.+-.+-+. +--.+.+||+.+|+|+|+--.. .....+.+ -+.|.-+
T Consensus 350 ~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~ 399 (468)
T PLN02207 350 AVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVEL 399 (468)
T ss_pred ccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEE
Confidence 66333222 2224689999999999987543 34443333 4566643
No 252
>PLN02555 limonoid glucosyltransferase
Probab=36.23 E-value=1.9e+02 Score=31.93 Aligned_cols=112 Identities=14% Similarity=0.048 Sum_probs=57.7
Q ss_pred cEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEE-eCC--ChhhH-HHH-HHHHHhCCCceEEEeccChHHHHHHHH
Q 008488 403 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVL-GTG--KKPME-KQL-EQLEILYPEKARGVAKFNIPLAHMIIA 475 (564)
Q Consensus 403 ~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIv-G~g--~~~~~-~~l-~~L~~~~~~~v~~~~~~~~~~~~~il~ 475 (564)
.+.+..|.+. ..+-+..++.+++.. +.+++++ ... ..... ..+ +...++.+++.......++.+ +++
T Consensus 279 VvyvsfGS~~~~~~~q~~ela~~l~~~---~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~---iL~ 352 (480)
T PLN02555 279 VVYISFGTVVYLKQEQIDEIAYGVLNS---GVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEK---VLA 352 (480)
T ss_pred eeEEEeccccCCCHHHHHHHHHHHHhc---CCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHH---HhC
Confidence 4666677764 233455555555544 4565544 311 00000 001 112222334454444445443 664
Q ss_pred h--cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-cceeEe
Q 008488 476 G--ADFILIPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEEG-FTGFQM 524 (564)
Q Consensus 476 ~--ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~g-~~G~l~ 524 (564)
. ..+||. -+--.+.+||+.+|+|+|+... ......+.+. +.|.-+
T Consensus 353 H~~v~~Fvt----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l 404 (480)
T PLN02555 353 HPSVACFVT----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRL 404 (480)
T ss_pred CCccCeEEe----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEc
Confidence 4 455553 2334579999999999998753 3345555554 677765
No 253
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=36.16 E-value=58 Score=26.11 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCC
Q 008488 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLT 366 (564)
Q Consensus 312 ~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~ 366 (564)
......|.|++..+...+++++ .|+. ++..+|-++|+..+.|..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~---~G~~--------~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN---LGAE--------NVFYLPLAANPERFRPIP 57 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH---cCCC--------CEEEccccCCHHHhCccc
Confidence 4467899999999999999997 6655 899999999999999875
No 254
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=35.67 E-value=58 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.034 Sum_probs=24.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++..+- ..+.- .+..+.++|.+.|++|.++...
T Consensus 1 k~i~l~vtG------s~~~~-~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG------SIAAY-KAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S------SGGGG-GHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC------HHHHH-HHHHHHHHHhhCCCEEEEEECC
Confidence 678777752 22222 3678999999999999988754
No 255
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=35.64 E-value=41 Score=33.63 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=28.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+..-. .+.-+..|.++|.+. |+|.|++|..+
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 89998887521 122377899999988 79999999754
No 256
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=35.56 E-value=51 Score=33.84 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++++. |++|.++ +-.|++.|++|++++..
T Consensus 2 ~m~I~IiGa--------GaiG~~~---a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSLW---ACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHHH---HHHHHhCCCCeEEEEec
Confidence 599999984 7777554 44577889999999875
No 257
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.23 E-value=1.5e+02 Score=27.44 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 415 KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
=.+.+.++|++.+..+++..+++-+|+..+...++.+.++ +-.|..++ ...-....+.++||-|+.-
T Consensus 89 ~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~-G~~V~v~g-~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKEN-GKETIVIG-AEPGFSTALQNSADIAIIL 155 (160)
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHC-CCEEEEEe-CCCCChHHHHHhcCeEEeC
Confidence 3688999999988555444444433433377778777765 44566655 2323344588999988753
No 258
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=34.56 E-value=4e+02 Score=25.10 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=57.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHHHHH--hcCEEEEcCCCCC----CcHHHHHHHH---cC
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRFEP----CGLIQLHAMR---YG 500 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~il~--~ADv~v~PS~~E~----~gl~~lEAma---~G 500 (564)
+.+++|+.+.+ .....++.+-...+. +.....+ +..+....+. ..|++++-....+ .|+.+++.+. -.
T Consensus 3 ~~~Ilivdd~~-~~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHP-IVLFGIRKSLEQIEW-VNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcH-HHHHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 35667776654 244445555444332 2222222 3344434443 4698888654432 5777777664 34
Q ss_pred CcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 501 TVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 501 ~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+|+|+-.... ..+.++.|..||+ ..|.+++.|.++|.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl----------~K~~~~~~l~~ai~ 121 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIV----------LKQGAPTDLPKALA 121 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEE----------ECCCCHHHHHHHHH
Confidence 5666543222 2344667888998 56667777766654
No 259
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.54 E-value=77 Score=30.46 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCC--CeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G--h~V~vitp~ 127 (564)
|||+++.+ |-|..+..+..++.+.+ ++|.++.++
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEec
Confidence 89999985 22556778888888764 667665444
No 260
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=34.53 E-value=91 Score=32.47 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -+. ++-..++.|.-|..+|.+.-|++.+
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd 240 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVIN 240 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccC
Confidence 4568999998876433 232 3444778888899999998888664
No 261
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=34.49 E-value=50 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=29.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||+++-. +.+|-...+...+++.|.. |++|.++-.
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 78888775 4678889899999999988 999988743
No 262
>PLN02554 UDP-glycosyltransferase family protein
Probab=34.33 E-value=1.4e+02 Score=32.87 Aligned_cols=113 Identities=11% Similarity=-0.018 Sum_probs=58.5
Q ss_pred cEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCC------------hhhHHH-HHHHHHhCCCceEEEeccCh
Q 008488 403 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQ-LEQLEILYPEKARGVAKFNI 467 (564)
Q Consensus 403 ~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~------------~~~~~~-l~~L~~~~~~~v~~~~~~~~ 467 (564)
.+++..|.+. ..+-+..++.+++.+ +.+++.+-..+ ....+. -+...++..++.....+.++
T Consensus 276 vvyvsfGS~~~~~~~~~~~la~~l~~~---~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ 352 (481)
T PLN02554 276 VVFLCFGSMGGFSEEQAREIAIALERS---GHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQ 352 (481)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHc---CCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCH
Confidence 4667778763 344677777777766 33544432110 000011 11111122234444444454
Q ss_pred HHHHHHHHhcCE--EEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccc-cccccCcceeEee
Q 008488 468 PLAHMIIAGADF--ILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLV-DTVEEGFTGFQMG 525 (564)
Q Consensus 468 ~~~~~il~~ADv--~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~-e~v~~g~~G~l~~ 525 (564)
.+ +++...+ ||. . +--.+++||+.+|+|+|+--.. ... .+++.-+.|..++
T Consensus 353 ~~---iL~H~~v~~Fvt--H--~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~ 410 (481)
T PLN02554 353 VA---VLAKPAIGGFVT--H--CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIR 410 (481)
T ss_pred HH---HhCCcccCcccc--c--CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEee
Confidence 43 6744444 542 2 2234799999999999987543 344 3455556677653
No 263
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=34.19 E-value=73 Score=28.18 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeE-EEEee
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAP 126 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V-~vitp 126 (564)
|++++... .|+ .+-.+....+++.++.+.||+| .|+.-
T Consensus 1 ~~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 1 KYTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred CEEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 46666665 676 4445667888999999999995 66654
No 264
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=33.94 E-value=54 Score=29.74 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=30.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|||++|-. +.+|..+.++..++..|.+.|++|.+..
T Consensus 2 ~ki~Ivy~-----S~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 2 MKILIVYG-----SRTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CeEEEEEE-----cCCCcHHHHHHHHHHHhccCCceEEEee
Confidence 78888876 4579999999999999999999995444
No 265
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=33.77 E-value=3e+02 Score=26.12 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=27.9
Q ss_pred HhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Ccccccccc
Q 008488 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTV 515 (564)
Q Consensus 475 ~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v 515 (564)
..=|++++....+. ..++.||...|.|+|+- |+...++.+
T Consensus 126 ~~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i~Dtn~~~~~i 166 (193)
T cd01425 126 RLPDLVIVLDPRKE-HQAIREASKLGIPVIAIVDTNCDPDLI 166 (193)
T ss_pred cCCCEEEEeCCccc-hHHHHHHHHcCCCEEEEecCCCCCccc
Confidence 34577777665433 77899999999999986 444444444
No 266
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.75 E-value=30 Score=30.76 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
...|||.||+. |.+-..|+.+|.+.||+|.-+..+
T Consensus 8 ~~~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGA-----------GRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECT-----------SCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEEeC
Confidence 35799999985 234566999999999999888655
No 267
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.46 E-value=63 Score=32.59 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=22.7
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
++|+| ..+++.|+++||+|.+++.+-+
T Consensus 15 SsGIG---~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 15 SSGIG---AELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCcHH
Confidence 57776 5689999999999999998754
No 268
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=32.70 E-value=93 Score=33.50 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHhcCEEEEc--CCCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 469 LAHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 469 ~~~~il~~ADv~v~P--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
.+.++++.||++++- ..-|. ++-..+..|--|.-+|-+..|++.|
T Consensus 196 ~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 196 SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred CHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 356799999999763 32243 4555888898899999998888654
No 269
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=32.66 E-value=1.3e+02 Score=25.46 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEE
Q 008488 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV 462 (564)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~ 462 (564)
++.++|++|+....--+...++++++|+++..+
T Consensus 63 P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai 95 (100)
T PF09949_consen 63 PERKFILIGDSGQHDPEIYAEIARRFPGRILAI 95 (100)
T ss_pred CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEE
Confidence 577999999754222456667888899877543
No 270
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.63 E-value=54 Score=33.14 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=24.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. |.+| ..++..|++.||+|+++..+
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78888884 4444 34777888899999999874
No 271
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=32.45 E-value=89 Score=31.42 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=28.7
Q ss_pred HhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc
Q 008488 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 475 ~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (564)
..+|++|--|.-+..--.+.+|+.+|+|+|+..+|-
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 468999988866666667888999999999876654
No 272
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.32 E-value=64 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=27.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+-|.+. ...-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 m~iI~v~s~----KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVGV----KGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEeC----CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 666555542 122344566788999999999999999654
No 273
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=32.15 E-value=17 Score=39.92 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.7
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 101 GGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 101 GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
++--..+..++++|+++||+|++++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 3455678889999999999999999863
No 274
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=32.12 E-value=1.7e+02 Score=32.05 Aligned_cols=116 Identities=12% Similarity=-0.004 Sum_probs=61.0
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCC------hhhHH---HHHHHHHhCCCceEEEeccChHHH
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGK------KPMEK---QLEQLEILYPEKARGVAKFNIPLA 470 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~------~~~~~---~l~~L~~~~~~~v~~~~~~~~~~~ 470 (564)
..+.+..|.+. +.+-.+.+..+++.+.. .+-+++-.... .+... ..+...++.+++.......++..
T Consensus 262 sVvyvsfGS~~~l~~~q~~ela~gL~~s~~-~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~- 339 (455)
T PLN02152 262 SVIYVSFGTMVELSKKQIEELARALIEGKR-PFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIE- 339 (455)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHcCC-CeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHH-
Confidence 35666678764 45567777777777732 33233322100 00000 11233333344444444445433
Q ss_pred HHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-cceeE
Q 008488 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEEG-FTGFQ 523 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~g-~~G~l 523 (564)
+++...+-++-+. +-..+++||+.+|+|+|+--. ......+.+. +.|+-
T Consensus 340 --iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 393 (455)
T PLN02152 340 --VLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVR 393 (455)
T ss_pred --HhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEE
Confidence 7888886444333 334579999999999998743 3344444441 24544
No 275
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=32.10 E-value=65 Score=30.49 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=27.0
Q ss_pred ceEEEEEeeccCccccchH-HHHhhhhHHHHHhCC-CeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANG-HRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~G-h~V~vitp 126 (564)
|||++|... |. ..++. ......+..++.++| |+|.++=-
T Consensus 1 mkiLvI~as--p~-~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL 41 (199)
T PF02525_consen 1 MKILVINAS--PR-PEGSFSRALADAFLEGLQEAGPHEVEIRDL 41 (199)
T ss_dssp EEEEEEE----SS-TTTSHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEEEEEcC--CC-CccCHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 899999985 53 22344 445566888899999 99988843
No 276
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=32.05 E-value=74 Score=29.53 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=32.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.|+|+-|... +.+|=.+.+..|.+.|.++|++|-++-...
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 3777777752 467888899999999999999999997654
No 277
>PRK00211 sulfur relay protein TusC; Validated
Probab=32.00 E-value=73 Score=27.86 Aligned_cols=40 Identities=20% Similarity=-0.007 Sum_probs=28.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+||... .|+ .+-.+.-..+++-++++.+++|.++...
T Consensus 2 ~ki~~i~~~-~Py--g~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 2 KRIAFVFRQ-APH--GTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred ceEEEEecC-CCC--CCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 569999987 787 2223333444577888889999988765
No 278
>PRK07236 hypothetical protein; Provisional
Probab=31.92 E-value=44 Score=35.26 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+.++|++|+.- .+|+. ++.+|++.|++|+|+=..
T Consensus 4 ~~~~~ViIVGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGS------LGGLF-----AALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCeEEEECCC------HHHHH-----HHHHHHhCCCCEEEEecC
Confidence 567899999962 35665 888999999999999643
No 279
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=31.67 E-value=3.9e+02 Score=24.17 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=58.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCc
Q 008488 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~~ 508 (564)
+++|+.+.+ .....+.++-...++ ....... +.......+. ..|++++-... +.-|...++.+...+|+|....
T Consensus 3 ~ilivd~~~-~~~~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~ 80 (196)
T PRK10360 3 TVALIDDHL-IVRSGFAQLLGLEPD-LQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV 80 (196)
T ss_pred EEEEECCcH-HHHHHHHHHHccCCC-cEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEEC
Confidence 566777654 234444444332222 2222222 3333333443 35888876544 4557778888877788776543
Q ss_pred ccc----ccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 509 GGL----VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 509 gg~----~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
-.. .+.+..|..|++ ..|.+.+.+.++|...
T Consensus 81 ~~~~~~~~~~~~~ga~~~i----------~kp~~~~~l~~~i~~~ 115 (196)
T PRK10360 81 HDSPALVEQALNAGARGFL----------SKRCSPDELIAAVHTV 115 (196)
T ss_pred CCCHHHHHHHHHcCCcEEE----------ECCCCHHHHHHHHHHH
Confidence 332 234556778887 5777777777766543
No 280
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=31.61 E-value=1.5e+02 Score=26.06 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.2
Q ss_pred ChHHHHHHHHhcCEEEEc
Q 008488 466 NIPLAHMIIAGADFILIP 483 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~P 483 (564)
..+...+++.+||++|+-
T Consensus 67 ~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 67 GSPAANEALEQADLVLAI 84 (137)
T ss_dssp SCHHHHHHHHHSSEEEEE
T ss_pred CCHHHHHHhcCCCEEEEE
Confidence 456677799999999863
No 281
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=31.38 E-value=1e+02 Score=26.03 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=27.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCC---CeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG---HRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G---h~V~vitp~ 127 (564)
|||+++.+. .|. ..........++.+....| ++|.|+...
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 788888875 453 2233566777888888999 999988764
No 282
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=31.28 E-value=86 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=28.4
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~ 127 (564)
.|||+.|++. ...-|-.+...+||.+|++ .|++|.++=..
T Consensus 34 ~~~vi~v~s~----kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSS----LPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECC----CCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4676666642 1234666778889999997 69999999544
No 283
>PRK07574 formate dehydrogenase; Provisional
Probab=31.23 E-value=95 Score=33.14 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++--. -|. ++-..+..|.-|.-+|-+..|++.+
T Consensus 242 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 242 FDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred HHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhh
Confidence 4568999999976433 233 4556899999999999998888664
No 284
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=30.91 E-value=59 Score=34.27 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||++.+ |.|-+-..|+..|.++||+|..+...
T Consensus 20 ~~~~IlVtG----------gtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITG----------AGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEEC----------CccHHHHHHHHHHHhCCCEEEEEEec
Confidence 579998764 44445566999999999999988753
No 285
>PRK06436 glycerate dehydrogenase; Provisional
Probab=30.55 E-value=1.7e+02 Score=30.17 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -|. ++-..+++|.-|.-+|-+..|++.+
T Consensus 167 l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 167 PEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred HHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 4568999999986432 233 4556899999999899888887554
No 286
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=30.44 E-value=1.2e+02 Score=31.42 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCEEEEcCC--CCCC---cHHHHHHHHcCCcEEEcCcccccc
Q 008488 468 PLAHMIIAGADFILIPSR--FEPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~--~E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
..+.++++.||++++.-. -+.- +-..++.|.-|.-+|-+.-|++.+
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 232 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVV 232 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccC
Confidence 345678999999986433 2333 445788898899888888887654
No 287
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.34 E-value=1.9e+02 Score=24.44 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcC
Q 008488 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 434 lvIvG~g~--~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~ 507 (564)
++++|.|- .-+.+.+++..++.+-.+. +...+..++...+..+|+++..... --+.-..-.+-.+|+||.+-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~-i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLE-AAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 45666664 3466777777777654344 3455667777789999999887653 122223333456688888766
No 288
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=30.32 E-value=68 Score=32.69 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=27.3
Q ss_pred ceEEEEEeeccCccccchHH--HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++.+ .||+| +...+|+.+|+++|++|.+|=..
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7877766 36665 45678999999999999998554
No 289
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=30.19 E-value=75 Score=33.77 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCceEEEEEeeccCccccchHH--HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~--~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|+|+.|++. .||.| +...+|+.+|+++|++|.+|=..
T Consensus 102 ~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 57888777754 45555 45677999999999999999543
No 290
>PRK06703 flavodoxin; Provisional
Probab=30.04 E-value=88 Score=28.16 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=29.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||+++-. +.+|-...++..++..|.+.|++|.+.-.
T Consensus 2 mkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 2 AKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 67666654 34789999999999999999999988754
No 291
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.98 E-value=5.9e+02 Score=25.64 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=61.1
Q ss_pred EEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCC-----------C-hhhHHHHHHHHHhCCCceEEEeccChHHHH
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG-----------K-KPMEKQLEQLEILYPEKARGVAKFNIPLAH 471 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g-----------~-~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~ 471 (564)
.++.+|- ..-...+.+++.++.+.+-..+++..|.- . .+--+.++++..+.+- -.....++...+.
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl-~~~te~~d~~~~~ 105 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNL-PVVTEVMDTRDVE 105 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCC-CEEEeeCChhhHH
Confidence 4444454 33346777788777777667788888821 1 1223345555555542 2223344666665
Q ss_pred HHHHhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCc
Q 008488 472 MIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 472 ~il~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~~ 508 (564)
.+...+|++-++|+. +.+++ +-++-..|+||+.+..
T Consensus 106 ~l~~~vd~~kIga~~~~n~~L-L~~~a~~gkPV~lk~G 142 (266)
T PRK13398 106 EVADYADMLQIGSRNMQNFEL-LKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHhCCEEEECcccccCHHH-HHHHhcCCCcEEEeCC
Confidence 555669999999985 45432 3334467999998864
No 292
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.77 E-value=69 Score=30.94 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=24.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.||.++|+.- +||+| ..+++.|.++|++|.++..+
T Consensus 5 ~~k~vlItG~------sg~iG---~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGA------SSGIG---KATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5776666631 34544 56888899999999988754
No 293
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=29.62 E-value=88 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=29.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
+.|++.|++. . ..-|-.++..+|+.+|++.|++|.+|=.
T Consensus 102 ~~~vi~vts~-~---~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSA-K---SGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECC-C---CCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4566555543 2 2567888999999999999999999843
No 294
>PRK07308 flavodoxin; Validated
Probab=29.59 E-value=78 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.5
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
.+|..+.+...++..|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 369999999999999999999988764
No 295
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=29.43 E-value=1e+02 Score=26.83 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=29.3
Q ss_pred CceEEEEEeeccCccccchHHHHh--hhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~--~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||+.|++ .| +|-...++ ..|.++-.++||++.|=+-.
T Consensus 2 ~mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 2 MAYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 399999987 45 56666666 55777777899999987654
No 296
>PRK06753 hypothetical protein; Provisional
Probab=29.24 E-value=49 Score=34.58 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=24.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|+.- .+|+. +|.+|+++|++|.|+=.+
T Consensus 1 ~~V~IvGgG------~aGl~-----~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAG------IGGLT-----AAALLQEQGHEVKVFEKN 32 (373)
T ss_pred CEEEEECCC------HHHHH-----HHHHHHhCCCcEEEEecC
Confidence 789999852 35555 788899999999998543
No 297
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=29.23 E-value=3.8e+02 Score=27.01 Aligned_cols=91 Identities=9% Similarity=-0.029 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhcccCCe-EE-EEEeCCCh---hhHHHHHHHHHhCCCceEEEeccChHHHHH----HHHhcCEEEEcCCC
Q 008488 416 GSDILAAAIPHFIKENV-QI-IVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNIPLAHM----IIAGADFILIPSRF 486 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v-~l-vIvG~g~~---~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~----il~~ADv~v~PS~~ 486 (564)
-+..-++.+.++. |++ ++ ++...... ...+.+++...+++-++....--+.+++.. +-...|+++++...
T Consensus 116 ~~~~~l~l~~~l~-P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~ 194 (294)
T PF04392_consen 116 PIEKQLELIKKLF-PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDN 194 (294)
T ss_dssp -HHHHHHHHHHHS-TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-H
T ss_pred CHHHHHHHHHHhC-CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCc
Confidence 4444444444442 222 33 34444332 345556666666654444333223333333 33466877776542
Q ss_pred ---CCCcHHHHHHHHcCCcEEEcC
Q 008488 487 ---EPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 487 ---E~~gl~~lEAma~G~PvI~s~ 507 (564)
..+...+..+..+++|++++.
T Consensus 195 ~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 195 LVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHTHHHHHHHCCCTT--EEESS
T ss_pred chHhHHHHHHHHHHhcCCCEEECC
Confidence 344455667788999999986
No 298
>PRK05723 flavodoxin; Provisional
Probab=29.07 E-value=84 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=29.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|||.++-. +.+|-.+.+...|+..|.++|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 67777744 3478899999999999999999998753
No 299
>PRK08605 D-lactate dehydrogenase; Validated
Probab=28.97 E-value=1.9e+02 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHhcCEEEEc--CCCCCC---cHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIP--SRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~P--S~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.+++..||++++. ...+.- +...++.|.-|..+|-+..|++.+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 45689999999864 433433 345788999999999998888654
No 300
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=28.57 E-value=4.2e+02 Score=25.99 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=57.6
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC-hhhHHHHHHHHHhCCCceE-EEeccC-hHHHHHHHHh-cC
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYPEKAR-GVAKFN-IPLAHMIIAG-AD 478 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~L~~~~~~~v~-~~~~~~-~~~~~~il~~-AD 478 (564)
|++.+-.+-++++.++.|.+++..+ ++.-|+.|+-. ..-+..+++++.+.+-++. ...+.+ .+++..++.. -+
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l---~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRL---KVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhC---cccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCe
Confidence 4555556668899999999999999 58889999865 4456788888888774332 222233 4455555544 68
Q ss_pred EEEEcCCCCCCc
Q 008488 479 FILIPSRFEPCG 490 (564)
Q Consensus 479 v~v~PS~~E~~g 490 (564)
+.|+-..-++++
T Consensus 138 ~~Iv~Vsa~gL~ 149 (223)
T COG2102 138 AIIVAVSAEGLD 149 (223)
T ss_pred EEEEEEeccCCC
Confidence 887765555554
No 301
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.55 E-value=63 Score=32.38 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=22.4
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~--~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.||+|+ ..-+|+.+|+++|++|.+|=..
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 477665 4678999999999999999443
No 302
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.42 E-value=71 Score=33.21 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=45.8
Q ss_pred CceEEEEEeeccCccccchHHH--HhhhhHHHHHhCCCeEEEEeeCCC-ccccccCcceEEEEEeCCeeeeEEEEEeeec
Q 008488 84 GLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aLa~~Gh~V~vitp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
.|||+|++. .||+|. ..-.++-.|++.|.+|.+++...- ...+ .....++.....+. +
T Consensus 1 ~~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d------~f~~elg~~~~~I~------~ 61 (322)
T COG0003 1 MTRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGD------VFDLELGHDPRKVG------P 61 (322)
T ss_pred CcEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHh------hhccccCCchhhcC------C
Confidence 378999885 589998 666677889999988888875421 1222 22223343332222 4
Q ss_pred CeeEEEEeCCccccccc
Q 008488 161 GVDRVFVDHPWFLAKVW 177 (564)
Q Consensus 161 gv~~~~v~~~~~~~~~w 177 (564)
++...-+|....+.+.|
T Consensus 62 nL~a~eiD~~~~l~ey~ 78 (322)
T COG0003 62 NLDALELDPEKALEEYW 78 (322)
T ss_pred CCceeeecHHHHHHHHH
Confidence 66666666555555555
No 303
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=28.38 E-value=3.4e+02 Score=25.42 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=33.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCC
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEP 488 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~ 488 (564)
..++++++...+..++..+++...++..+......+.+.....++.+|+++..+....
T Consensus 52 g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 52 GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCc
Confidence 4577777754433333334443333333443333456666678899999888765433
No 304
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.27 E-value=50 Score=32.14 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=31.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
|..++++. +| ..|-.+...+|+++|.+.+|+|..++..|
T Consensus 1 mpLiIlTG--yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG--YP---GSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec--CC---CCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 55666665 56 47888899999999999999998887643
No 305
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=28.24 E-value=48 Score=33.59 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
+||.|-+=..|...|.+.||+|++++.+.+
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 688887778899999999999999998744
No 306
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=28.12 E-value=89 Score=27.03 Aligned_cols=39 Identities=18% Similarity=0.016 Sum_probs=27.8
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+||... .|+ .+-.+.-..+++.++++.+++|.++...
T Consensus 1 kil~i~~~-~Py--g~~~~~e~l~~al~~aa~~~eV~vff~~ 39 (116)
T TIGR03010 1 KLAFVFRQ-APH--GTASGREGLDALLAASAFDEDIGVFFID 39 (116)
T ss_pred CEEEEEcC-CCC--CcchHHHHHHHHHHHHhccCCeEEEEec
Confidence 68888877 787 2223333555688888899999998765
No 307
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=28.11 E-value=93 Score=30.65 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|+.|... +..|-.+.+..|++.|.++|++|-++-+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 788887752 25788889999999999999999999654
No 308
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.97 E-value=85 Score=33.73 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=28.8
Q ss_pred CCceEEEEEeeccCccccchHHH--HhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aLa~~Gh~V~vitp 126 (564)
.+|+|+-|.+. .||.|+ ...+|+.+|+.+|++|.+|=.
T Consensus 119 ~~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 119 EHLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CCceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 46887777753 466654 567899999999999999843
No 309
>PRK04155 chaperone protein HchA; Provisional
Probab=27.95 E-value=1e+02 Score=31.46 Aligned_cols=47 Identities=15% Similarity=-0.042 Sum_probs=28.7
Q ss_pred CCCceEEEEEeeccCcc----c--cchHH-HHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 82 GVGLNILFVGTEVAPWS----K--TGGLG-DVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~----~--~GG~~-~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
..++|||+|.+...-+. + .-|.. .=+..-...|.+.|++|.++++..
T Consensus 47 ~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 47 RGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34579999998754321 1 12222 112223456788999999999863
No 310
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.92 E-value=3.3e+02 Score=22.09 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred EEEeCCChhhHHHHHHHHHhCCCce-EEEeccChHHHHHHHH--hcCEEEEcCCCC-CCcHHHHHHHHc---CCcEEEc-
Q 008488 435 IVLGTGKKPMEKQLEQLEILYPEKA-RGVAKFNIPLAHMIIA--GADFILIPSRFE-PCGLIQLHAMRY---GTVPIVA- 506 (564)
Q Consensus 435 vIvG~g~~~~~~~l~~L~~~~~~~v-~~~~~~~~~~~~~il~--~ADv~v~PS~~E-~~gl~~lEAma~---G~PvI~s- 506 (564)
+|+.+ ++...+.++.+-...+ + .....-+.+.+...+. ..|++++-...+ .-|+.+++.+.. .+|+|.-
T Consensus 2 livd~-~~~~~~~l~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 2 LIVDD-DPEIRELLEKLLERAG--YEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEES-SHHHHHHHHHHHHHTT--EEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEC-CHHHHHHHHHHHHhCC--CCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEec
Confidence 34443 3445556666655433 4 2222224444444444 347888776553 456666665543 6776643
Q ss_pred Cc---cccccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 507 ST---GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 507 ~~---gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
+. .-..+.++-|..|++ ..|.+.+.|.++|
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~i 111 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYL----------SKPFSPEELRAAI 111 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEE----------ESSSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEE----------ECCCCHHHHHHhh
Confidence 32 234556677889998 6888999998876
No 311
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=27.63 E-value=48 Score=32.15 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=22.6
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 101 GGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 101 GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
+|.|..=..|+..|++.||+|++.+.+.+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 34455556699999999999999987743
No 312
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.61 E-value=79 Score=30.79 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=23.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++++. +||+| ..+++.|.+.|++|.+++.+
T Consensus 1 ~~vlItGa-------sg~iG---~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGA-------TAGFG---ECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEECC-------CchHH---HHHHHHHHHCCCEEEEEECC
Confidence 66666554 46665 44788899999999888754
No 313
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=27.56 E-value=1.4e+02 Score=33.38 Aligned_cols=136 Identities=12% Similarity=0.010 Sum_probs=81.7
Q ss_pred ccEEEEEeccc-cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 402 IPVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 402 ~~~i~~iGrl~-~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
....+..|.-. -.||-+..++++.+. -+++-.|.+... -....+.-|.-++..+..+..++++.+-+|
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~--~eih~tV~~~~~---------~~~~~P~~V~NHG~l~~~ef~~lL~~akvf 345 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKY--MEIHGTVYDEPQ---------RPPNVPSFVKNHGILSGDEFQQLLRKAKVF 345 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhh--cEEEEEeccCCC---------CCcccchhhhhcCcCCHHHHHHHHHhhhEe
Confidence 34556666654 478889999988875 355555544322 001122235557778899999999999999
Q ss_pred EEcCC-CCCCcHHHHHHHHcCCcEEEcCcccc-----ccccccCcceeEeecc---------ccccccCCCCCHHHHHhh
Q 008488 481 LIPSR-FEPCGLIQLHAMRYGTVPIVASTGGL-----VDTVEEGFTGFQMGSF---------SVDVIYSSPSYNSRVIPR 545 (564)
Q Consensus 481 v~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~-----~e~v~~g~~G~l~~~~---------~~~~~~v~~~d~~aLa~a 545 (564)
|=.-. +| |=+.+||++.|+|.|-...... .+..++.-|---+-.= ......|+-+|.+++-+|
T Consensus 346 iGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~A 423 (559)
T PF15024_consen 346 IGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAA 423 (559)
T ss_pred eecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHH
Confidence 94322 34 4468999999999998765322 2222222111111100 112445788888888777
Q ss_pred cccCC
Q 008488 546 IPLDS 550 (564)
Q Consensus 546 I~~~~ 550 (564)
|++..
T Consensus 424 vk~il 428 (559)
T PF15024_consen 424 VKAIL 428 (559)
T ss_pred HHHHH
Confidence 76554
No 314
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.53 E-value=82 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=24.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++++. +|++| ..+++.|.++||+|..++.+
T Consensus 17 ~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecC
Confidence 578887775 35555 44777888899999887754
No 315
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.52 E-value=2.2e+02 Score=29.01 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=26.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeCCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRYD 129 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~~~ 129 (564)
++|||+++.+. .+.-+..|..+.... +++|.++..+.+
T Consensus 88 ~~~ri~vl~Sg---------~g~nl~al~~~~~~~~~~~~i~~visn~~ 127 (286)
T PRK13011 88 ARPKVLIMVSK---------FDHCLNDLLYRWRIGELPMDIVGVVSNHP 127 (286)
T ss_pred cCceEEEEEcC---------CcccHHHHHHHHHcCCCCcEEEEEEECCc
Confidence 47999999962 244577777776543 688888766543
No 316
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.45 E-value=1.9e+02 Score=24.18 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=43.6
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHH--HHHcCCcEEEcCc
Q 008488 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH--AMRYGTVPIVAST 508 (564)
Q Consensus 434 lvIvG~g~--~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lE--Ama~G~PvI~s~~ 508 (564)
++++|+|- .-+.+.+++..++.+-.+. +...+...+......+|++++.+... +-..-++ +-.+|+||+.-+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~-v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVK-IAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEE-EEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 56667774 2355666776666553332 33445555656778899999876642 1233333 3456789887664
No 317
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.33 E-value=3.1e+02 Score=23.00 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
++++++-+=+.. .+..+...++++ +. .|+. ..++++ ..|++++.+..+.-.-.+.+++..|++|++-.
T Consensus 24 ~~~~v~~v~d~~---~~~~~~~~~~~~--~~---~~~~--~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 24 PDFEVVAVCDPD---PERAEAFAEKYG--IP---VYTD--LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp TTEEEEEEECSS---HHHHHHHHHHTT--SE---EESS--HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred CCcEEEEEEeCC---HHHHHHHHHHhc--cc---chhH--HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 566666443333 234555566665 32 3322 234555 78999998887766777889999999888764
No 318
>PLN02778 3,5-epimerase/4-reductase
Probab=27.29 E-value=69 Score=32.60 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vi 124 (564)
+.+|||++.+. .|-.=..|++.|.++||+|.+.
T Consensus 7 ~~~~kiLVtG~----------tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIYGK----------TGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEECC----------CCHHHHHHHHHHHhCCCEEEEe
Confidence 34699887654 3334456888999999999754
No 319
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=27.15 E-value=64 Score=32.68 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=23.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++++. |++| ..++..|++.||+|.++..
T Consensus 1 mkI~IiG~--------G~iG---~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVG---GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHH---HHHHHHHHHCCCceEEEec
Confidence 88999884 4444 3367778889999999986
No 320
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=27.06 E-value=77 Score=32.30 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++.+..=+ ....+.+++.++||+|.++.+.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 8999999763211 3456999999999999999765
No 321
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=26.87 E-value=3e+02 Score=29.24 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCCC-CCccEEEEEeccccccC-HHHHHHHHHhcccCCeEEEEEeCCC-hhhHHHHH--HHHH----h
Q 008488 384 PLLKEALQAEVGLPVD-RNIPVIGFIGRLEEQKG-SDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLE--QLEI----L 454 (564)
Q Consensus 384 ~~~~~~l~~~~gl~~~-~~~~~i~~iGrl~~~KG-~d~ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~--~L~~----~ 454 (564)
+..+.++.+++|++.. ++...+.. +...+. +..+++++... ...+.+.|.++.. ..+...+. .+.. .
T Consensus 165 ~~~~~~~~~~lg~~~~~~~~~~vsl---F~Ye~~~l~~ll~~~~~~-~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~ 240 (374)
T PF10093_consen 165 PAARAAFLRRLGLPEPEPGALRVSL---FCYENAALASLLDAWAAS-PKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQ 240 (374)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEE---EeCCchHHHHHHHHHhcC-CCCeEEEecCCccHHHHHHHhccccccCccccc
Confidence 4557888999999632 22222222 233344 78888888865 2457777766433 22222222 1111 1
Q ss_pred CC-CceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 455 YP-EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 455 ~~-~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
.+ -.+....-++.++...++..||+-++ |-|- +.+-|+..|+|.|=.
T Consensus 241 ~g~l~l~~lPF~~Q~~yD~LLw~cD~NfV--RGED---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 241 RGNLTLHVLPFVPQDDYDRLLWACDFNFV--RGED---SFVRAQWAGKPFVWH 288 (374)
T ss_pred cCCeEEEECCCCCHHHHHHHHHhCccceE--ecch---HHHHHHHhCCCceEe
Confidence 11 13444444588999999999999887 3343 367889999998844
No 322
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.74 E-value=89 Score=29.91 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=23.4
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|+|++.+. .||+| ..+++.|.++||+|.++..+
T Consensus 5 ~~~ilItGa-------sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 5 GKTALVTGA-------SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 356666553 35555 45788889999998777654
No 323
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.51 E-value=6e+02 Score=25.42 Aligned_cols=91 Identities=11% Similarity=-0.057 Sum_probs=56.7
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCh------------hhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEc
Q 008488 416 GSDILAAAIPHFIKENVQIIVLGTGKK------------PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (564)
Q Consensus 416 G~d~ll~A~~~l~~~~v~lvIvG~g~~------------~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~P 483 (564)
.-+.+++..+.+.+..++++..|.-++ +--+.|.+..++++-.+ ....++...+..+...+|++=+|
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~-~Tev~d~~~v~~~~e~vdilqIg 105 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS-VSEIMSERQLEEAYDYLDVIQVG 105 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE-EEeeCCHHHHHHHHhcCCEEEEC
Confidence 344555555555445788888885321 22334445555555222 23445777777677789999999
Q ss_pred CCCCCCcHHHHHHH-HcCCcEEEcCc
Q 008488 484 SRFEPCGLIQLHAM-RYGTVPIVAST 508 (564)
Q Consensus 484 S~~E~~gl~~lEAm-a~G~PvI~s~~ 508 (564)
|+. ..-..+++++ ..|+||+.+..
T Consensus 106 s~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 106 ARN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred ccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 984 3335566666 56999998874
No 324
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.38 E-value=58 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
.||.|.+-..++++|.++||+|.+++.+..
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 466666677799999999999999998743
No 325
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.28 E-value=97 Score=30.67 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=21.5
Q ss_pred chHH--HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 101 GGLG--DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 101 GG~~--~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+| +...+|+.+|+++|++|.++=..
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 5554 56788999999999999999543
No 326
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=26.03 E-value=1.8e+02 Score=31.03 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=31.7
Q ss_pred HHHHHHhcCEEEE--cCCC----CCC---cHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILI--PSRF----EPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~--PS~~----E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++ |..- +.. +-..++.|.-|.-+|-+..|++.+
T Consensus 161 l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 161 LERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213 (381)
T ss_pred HHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccC
Confidence 4568899998874 3222 233 445899999999999998888654
No 327
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.84 E-value=1e+02 Score=31.19 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=30.5
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+++|||++++....|.... .-.....+..+|.+.||+|.++.+.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~--~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREV--SLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceE--eHHhHHHHHHHHHHCCCEEEEEecC
Confidence 3467999998654443111 1124477999999999999999755
No 328
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=25.81 E-value=1.2e+02 Score=28.17 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHhcCEEEEcCCC----CCCcHH--HHHHHHcCCcEEEcCcccc
Q 008488 473 IIAGADFILIPSRF----EPCGLI--QLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 473 il~~ADv~v~PS~~----E~~gl~--~lEAma~G~PvI~s~~gg~ 511 (564)
+-..+|++|+--.- |+-|+. +.+|++.|+||+++-....
T Consensus 90 l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 90 LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 44568988886542 455554 8999999999998854433
No 329
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=25.77 E-value=8.4e+02 Score=26.06 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (564)
+++-.+++++|+.|-.-++ +++=||+.|+|+|+-...
T Consensus 277 ~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~ 313 (385)
T COG2327 277 EELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYD 313 (385)
T ss_pred HHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeec
Confidence 4555699999999876554 345589999999987643
No 330
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.62 E-value=5.3e+02 Score=25.91 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=57.7
Q ss_pred EEeccc-cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcC-
Q 008488 407 FIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS- 484 (564)
Q Consensus 407 ~iGrl~-~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS- 484 (564)
.+|-+. .+-|=|.+++++-+-..++..++++...+.+. ...+ ++....+++...+...+..+|++|...
T Consensus 3 l~GyyG~~N~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~-------~~~~--~v~~~~r~~~~~~~~~l~~~D~vI~gGG 73 (298)
T TIGR03609 3 LCGYYGFGNLGDEALLAALLRELPPGVEPTVLSNDPAET-------AKLY--GVEAVNRRSLLAVLRALRRADVVIWGGG 73 (298)
T ss_pred EEEecCCCCcchHHHHHHHHHhcCCCCeEEEecCChHHH-------Hhhc--CceEEccCCHHHHHHHHHHCCEEEECCc
Confidence 344443 46688888887643334778888887655322 1233 366666777666667899999999763
Q ss_pred -CC-CCCcH--------HHHHHHHcCCcEEEcCc
Q 008488 485 -RF-EPCGL--------IQLHAMRYGTVPIVAST 508 (564)
Q Consensus 485 -~~-E~~gl--------~~lEAma~G~PvI~s~~ 508 (564)
.+ +..+. ...-|..+|+|++....
T Consensus 74 ~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 74 SLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 22 22111 23446678999887643
No 331
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.59 E-value=95 Score=29.88 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=25.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
++|+|++++. .||+| ..+++.|+++||+|.++..
T Consensus 5 ~~~~ilItGa-------sg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGG-------SGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCeEEEEcC
Confidence 3577776664 36666 4688999999999988764
No 332
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.42 E-value=1e+02 Score=30.19 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=27.7
Q ss_pred ceEEEEEeeccCccccchHHH--HhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~--~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+-|.+. .||.|+ ..-+|+.+|+++|.+|.++=..
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 676666643 577665 4567999999999999999654
No 333
>PRK08163 salicylate hydroxylase; Provisional
Probab=25.07 E-value=71 Score=33.67 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=26.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
++++|++|+.- .+|+. +|.+|++.|++|.|+=.
T Consensus 3 ~~~~V~IvGaG------iaGl~-----~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 3 KVTPVLIVGGG------IGGLA-----AALALARQGIKVKLLEQ 35 (396)
T ss_pred CCCeEEEECCc------HHHHH-----HHHHHHhCCCcEEEEee
Confidence 46899999962 36666 78889999999999844
No 334
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.90 E-value=52 Score=32.22 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.4
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 102 G~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|.|.+-..+|+.|.++||+|.++-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 34566777999999999999999654
No 335
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=24.80 E-value=6.3e+02 Score=24.32 Aligned_cols=46 Identities=24% Similarity=0.129 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCEEEEcC--------CCCCCcH--HHHHHHHcCCcEEEcCccccc
Q 008488 467 IPLAHMIIAGADFILIPS--------RFEPCGL--IQLHAMRYGTVPIVASTGGLV 512 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS--------~~E~~gl--~~lEAma~G~PvI~s~~gg~~ 512 (564)
.+...+.+..||++.+.- .+...++ .+.++...|+|++.++.|.+.
T Consensus 74 ~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 74 DPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred CHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHh
Confidence 445556888999888753 1222233 466677889999999877644
No 336
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.72 E-value=1e+02 Score=30.71 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=26.2
Q ss_pred ceEEEEEeeccCccccchHH--HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++.+ .||.| +...+|+.+|+++|++|.++=..
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6777663 25554 55688999999999999998544
No 337
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=24.66 E-value=1e+02 Score=30.68 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=25.8
Q ss_pred ceEEEEEeeccCccccchHH--HHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aLa~~Gh~V~vitp 126 (564)
|+|++. . .||+| +..-+|+.+|+++|++|.+|=.
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 666666 2 36665 4567899999999999999843
No 338
>CHL00175 minD septum-site determining protein; Validated
Probab=24.64 E-value=1.2e+02 Score=30.32 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=27.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
+||+.|.+. ...-|-.+...+|+.+|++.|++|.++=.
T Consensus 15 ~~vi~v~s~----KGGvGKTt~a~nLA~~La~~g~~vlliD~ 52 (281)
T CHL00175 15 SRIIVITSG----KGGVGKTTTTANLGMSIARLGYRVALIDA 52 (281)
T ss_pred ceEEEEEcC----CCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 466666653 11234456778899999999999998843
No 339
>PRK06924 short chain dehydrogenase; Provisional
Probab=24.49 E-value=87 Score=30.38 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=19.0
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+||+| ..++++|+++|++|.+++..
T Consensus 10 sggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 10 SQGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred CchHH---HHHHHHHHhcCCEEEEEeCC
Confidence 35555 55799999999999887654
No 340
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=24.30 E-value=88 Score=32.03 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=22.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++++. +|++| ..|++.|.++||+|.++..
T Consensus 1 m~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGG-------SGYIG---SHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEECC-------CChHH---HHHHHHHHHCCCeEEEEec
Confidence 67766653 34444 4578889999999998753
No 341
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.05 E-value=6.4e+02 Score=24.13 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=49.8
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHHH-HHHhcCEEEEcCCCC
Q 008488 410 RLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRFE 487 (564)
Q Consensus 410 rl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~-il~~ADv~v~PS~~E 487 (564)
|.........+++|+- +..++++=+--..+...+.++.+.+++++-+.+.+.. +.+++.. +-++|++++.|...+
T Consensus 15 r~~~~~~a~~~~~al~---~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~ 91 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALI---EGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDP 91 (196)
T ss_dssp TTSSGGGHHHHHHHHH---HTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--H
T ss_pred EcCCHHHHHHHHHHHH---HCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCH
Confidence 4444444444444444 3355555444444446677777777777766677776 5555443 666788888886542
Q ss_pred C-----------------CcHHHHHHHHcCCcEE
Q 008488 488 P-----------------CGLIQLHAMRYGTVPI 504 (564)
Q Consensus 488 ~-----------------~gl~~lEAma~G~PvI 504 (564)
. .+.-+.+|+.+|.-+|
T Consensus 92 ~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 92 EVIEYAREYGIPYIPGVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp HHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEE
Confidence 1 1334677777777666
No 342
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=24.05 E-value=89 Score=31.45 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=25.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC---CCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN---GHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~---Gh~V~vitp~~~ 129 (564)
||||+.+..-.- .-| +..|.++|++. |++|+|++|..+
T Consensus 1 M~ILlTNDDGI~---a~G----l~aL~~~l~~~~~~~~~V~VVAP~~e 41 (261)
T PRK13931 1 MRILITNDDGIN---APG----LEVLEQIATELAGPDGEVWTVAPAFE 41 (261)
T ss_pred CeEEEEcCCCCC---CHh----HHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 899988875211 123 55667777663 479999999754
No 343
>PLN02206 UDP-glucuronate decarboxylase
Probab=24.04 E-value=1e+02 Score=33.41 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=24.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
+.|||++.+ |.|-+=..|+++|.++||+|.++.
T Consensus 118 ~~~kILVTG----------atGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTG----------GAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEEC----------cccHHHHHHHHHHHHCcCEEEEEe
Confidence 569987655 444445568899999999998875
No 344
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=23.96 E-value=84 Score=34.10 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=25.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.++|||++.+ |.|-+-..|++.|.++||+|.++..
T Consensus 118 ~~~mkILVTG----------atGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 118 RKRLRIVVTG----------GAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred cCCCEEEEEC----------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3569987765 4444455689999999999998764
No 345
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.92 E-value=8.7e+02 Score=25.60 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=61.7
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC------------hhhHHHHHHHHHhCCCceEEEeccChHHH
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~------------~~~~~~l~~L~~~~~~~v~~~~~~~~~~~ 470 (564)
+.++.+|- ..-...+.+++.++.+.+..++++-.|.-+ .+--+.+++...+.+-.+ ....++...+
T Consensus 101 ~l~vIAGP-CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~-~tev~d~~~v 178 (352)
T PRK13396 101 PVVVVAGP-CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI-ITEVMDAADL 178 (352)
T ss_pred eEEEEEeC-CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcE-EEeeCCHHHH
Confidence 45556553 334455667777766655567777656322 123344455555555322 2444566666
Q ss_pred HHHHHhcCEEEEcCCC-CCCcHHHHHHH-HcCCcEEEcCc
Q 008488 471 HMIIAGADFILIPSRF-EPCGLIQLHAM-RYGTVPIVAST 508 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~-E~~gl~~lEAm-a~G~PvI~s~~ 508 (564)
..+...+|++=++|+. ..+++ |++. ..|+||+.+..
T Consensus 179 ~~~~~~~d~lqIga~~~~n~~L--L~~va~t~kPVllk~G 216 (352)
T PRK13396 179 EKIAEVADVIQVGARNMQNFSL--LKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHhhCCeEEECcccccCHHH--HHHHHccCCeEEEeCC
Confidence 6666779999999985 45554 5554 67999998863
No 346
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=23.90 E-value=1e+02 Score=30.20 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=19.9
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|++| ..|+++|.++|++|++++..
T Consensus 24 SSG~iG---~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 24 STGQLG---KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred cchHHH---HHHHHHHHhCCCEEEEEECc
Confidence 355555 55889999999999999743
No 347
>PRK05920 aromatic acid decarboxylase; Validated
Probab=23.88 E-value=1.5e+02 Score=28.69 Aligned_cols=37 Identities=22% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCceEEEEEeeccCccccchHH-HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~-~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+++||++-.+ ||.+ .....+.+.|.+.|++|.++...
T Consensus 2 ~~krIllgIT--------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 2 KMKRIVLAIT--------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCCEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 3577776653 3333 45667899999999999999865
No 348
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=23.79 E-value=1.4e+02 Score=28.30 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=26.2
Q ss_pred ceEEEEEeeccCccccchH-HHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||+.|+.. |. .++. ...+....+.+.+.|++|.++--
T Consensus 1 mkIl~I~GS--pr--~~S~t~~l~~~~~~~l~~~g~ev~~idL 39 (191)
T PRK10569 1 MRVITLAGS--PR--FPSRSSALLEYAREWLNGLGVEVYHWNL 39 (191)
T ss_pred CEEEEEEcC--CC--CCChHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 899999975 42 2343 33455566677778999998854
No 349
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=23.78 E-value=2.9e+02 Score=25.09 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhccc---CCeEEEEEeCCChhhHHHHHHHHHhCC-CceEEEec--c---ChH----HHHHHHHh--cCEE
Q 008488 416 GSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAK--F---NIP----LAHMIIAG--ADFI 480 (564)
Q Consensus 416 G~d~ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~L~~~~~-~~v~~~~~--~---~~~----~~~~il~~--ADv~ 480 (564)
--..++.+..++.+ ..+..+++|.. +...+.+++....++ +++..... + +.+ .+.++++. .|++
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~-~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lV 94 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPA-EEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLV 94 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETC-CCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecc-hhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 34566777777765 26888888942 336666666665555 44544322 1 122 22345555 8999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
++|+...+-.+...=|...|.|+++-
T Consensus 95 l~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 95 LFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp EEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred EEcCcCCCCcHHHHHHHHhCCCccce
Confidence 99998766667777788888888754
No 350
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.71 E-value=1.3e+02 Score=28.86 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEcc
Q 008488 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHN 267 (564)
Q Consensus 226 ~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~ 267 (564)
++|| +|.+-.|+..+.|.++.... + -+.-+|.
T Consensus 78 ~~~d-lvvLAGyMrIL~~~fl~~~~-------g--rIlNIHP 109 (200)
T COG0299 78 YGPD-LVVLAGYMRILGPEFLSRFE-------G--RILNIHP 109 (200)
T ss_pred cCCC-EEEEcchHHHcCHHHHHHhh-------c--ceEecCc
Confidence 3699 67777899999898888653 2 4677883
No 351
>PLN02712 arogenate dehydrogenase
Probab=23.55 E-value=1.3e+02 Score=34.60 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=26.9
Q ss_pred cCCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 81 ~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..++|||++|+. |.+| ..++.+|.+.|++|.++.++
T Consensus 49 ~~~~~kIgIIG~--------G~mG---~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 49 NTTQLKIAIIGF--------GNYG---QFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred cCCCCEEEEEcc--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 346899999983 4333 45888999999999887654
No 352
>PRK05693 short chain dehydrogenase; Provisional
Probab=23.41 E-value=90 Score=30.91 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=24.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||.++|+.- +||+| ..+++.|+++|++|.+++.+
T Consensus 1 mk~vlItGa------sggiG---~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGC------SSGIG---RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecC------CChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 566666532 46666 46788889999999887754
No 353
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=23.39 E-value=1e+02 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=24.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++.+. .+|+| ..+++.|+++|++|.++..+
T Consensus 1 m~vlItGa-------s~gIG---~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTAS-------SRGIG---FNVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEcC-------CcHHH---HHHHHHHHHcCCEEEEEeCC
Confidence 67776664 35555 45888999999998887654
No 354
>PRK06849 hypothetical protein; Provisional
Probab=23.33 E-value=98 Score=32.81 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||++++.. .| ....++++|.+.||+|.++...
T Consensus 3 ~~~~VLI~G~~-~~---------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR-AP---------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC-cH---------HHHHHHHHHHHCCCEEEEEeCC
Confidence 47999998864 22 3556999999999999999765
No 355
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=23.28 E-value=3.5e+02 Score=28.41 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=31.9
Q ss_pred HHHHHhcCEEEE-----cCCCCCCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 471 HMIIAGADFILI-----PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 471 ~~il~~ADv~v~-----PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
.+++..||++.+ |+..--..-..+-.|--|+-+|-+..||+.|.
T Consensus 195 ~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 195 EEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred HHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence 358999999864 22222234447778899999999999998774
No 356
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.15 E-value=1.1e+02 Score=29.68 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++.+. +||+| ..+++.|++.|++|.+++.+
T Consensus 2 ~~vlItGa-------sggiG---~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 2 VRAIVTGH-------SRGLG---AALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred ceEEEecC-------CcchH---HHHHHHHHhCCCEEEEEecC
Confidence 56665553 35655 55788899999999888654
No 357
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=4.5e+02 Score=26.36 Aligned_cols=96 Identities=23% Similarity=0.407 Sum_probs=61.4
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEE--eccChHHHHHHH-----HhcCEEEEcCCC
Q 008488 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV--AKFNIPLAHMII-----AGADFILIPSRF 486 (564)
Q Consensus 415 KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~-~v~~~--~~~~~~~~~~il-----~~ADv~v~PS~~ 486 (564)
-|.|++...++...+++.++-++|+-+.-.++..+.+..++|+ ++... +.|..++...++ .++|++++-
T Consensus 92 ~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~Vg--- 168 (253)
T COG1922 92 AGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVG--- 168 (253)
T ss_pred ChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEe---
Confidence 3888888888888667889999998887788888889999983 44433 333333322333 367888873
Q ss_pred CCCcHHHHHHH------HcCCcEEEcCccccccccc
Q 008488 487 EPCGLIQLHAM------RYGTVPIVASTGGLVDTVE 516 (564)
Q Consensus 487 E~~gl~~lEAm------a~G~PvI~s~~gg~~e~v~ 516 (564)
.|..-.|-. .+. +.|.-.+||.-|+..
T Consensus 169 --mG~P~QE~wi~~~~~~~~-~~v~igVGg~fDv~s 201 (253)
T COG1922 169 --MGVPRQEIWIARNRQQLP-VAVAIGVGGSFDVFS 201 (253)
T ss_pred --CCCchhHHHHHHhHHhcC-CceEEeccceEEEec
Confidence 333322222 233 345556677777764
No 358
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=23.09 E-value=56 Score=32.70 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=25.1
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccc-cC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDA-WD 136 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~-~~ 136 (564)
-||.. ++-++++.||+|.+.-|+.+-..+. |+
T Consensus 31 yGGa~-----mAiefAeAGHDVVLaePn~d~~dd~~w~ 63 (340)
T COG4007 31 YGGAR-----MAIEFAEAGHDVVLAEPNRDIMDDEHWK 63 (340)
T ss_pred CCchH-----HHHHHHHcCCcEEeecCCccccCHHHHH
Confidence 38876 7889999999999999987654444 54
No 359
>PRK05884 short chain dehydrogenase; Provisional
Probab=23.08 E-value=1.2e+02 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=24.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++.+. .||+| ..+++.|+++|++|.++..+
T Consensus 1 m~vlItGa-------s~giG---~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 1 VEVLVTGG-------DTDLG---RTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CeEEEEeC-------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 67666554 35555 55888999999999988654
No 360
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.95 E-value=87 Score=33.21 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..++|++|+.- .+|+. +|.+|++.|++|.|+=..
T Consensus 17 ~~~dV~IvGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 17 LTYDVAIVGGG------IVGLT-----LAAALKDSGLRIALIEAQ 50 (415)
T ss_pred cccCEEEECcC------HHHHH-----HHHHHhcCCCEEEEEecC
Confidence 35899999862 35655 788899999999999543
No 361
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=22.92 E-value=1.1e+02 Score=31.79 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=24.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++.+. +|++| ..+++.|.++||+|.++..+
T Consensus 4 ~k~ilItGa-------tG~IG---~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 4 GKKVLVTGH-------TGFKG---SWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CCEEEEECC-------CChhH---HHHHHHHHHCCCEEEEEeCC
Confidence 577766554 35555 56889999999999887643
No 362
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=22.88 E-value=1.2e+02 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=20.7
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 102 G~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|-.+...+||.+|+++|++|.++=..
T Consensus 13 GKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 13 GKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44556777999999999999998543
No 363
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=22.81 E-value=1.5e+02 Score=26.35 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=22.6
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
...|......+||..|++.|++|.++-..
T Consensus 10 ~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 10 GGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp TTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 35788889999999999999998888654
No 364
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=80 Score=34.65 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++.- .-|++ -+.+|+++||+|+++=.+
T Consensus 1 ~rVai~GaG------~AgL~-----~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAG------LAGLA-----AAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEccc------HHHHH-----HHHHHHhCCCceEEEecc
Confidence 788888842 23444 677899999999999654
No 365
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.60 E-value=7.3e+02 Score=26.72 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=65.8
Q ss_pred EEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC-----hhhHHHHHHHHHh-CCCceEEEeccC-----hHHHHHH
Q 008488 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEIL-YPEKARGVAKFN-----IPLAHMI 473 (564)
Q Consensus 405 i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-----~~~~~~l~~L~~~-~~~~v~~~~~~~-----~~~~~~i 473 (564)
+=|.|+..+.+-.....+.+++++++++.+||+-+.- ..+-+.+.+..+. .|+++.++..-+ .+++..+
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 4567789999999999999999998999999998642 2333344444433 357777776642 2333333
Q ss_pred HHhcCE--EEEcCCC----CCCcHHHHHHHHcCCcEEEcCccc
Q 008488 474 IAGADF--ILIPSRF----EPCGLIQLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 474 l~~ADv--~v~PS~~----E~~gl~~lEAma~G~PvI~s~~gg 510 (564)
=...|+ +|++-.. -+.-++..+ +.++|+|--.+|-
T Consensus 237 k~~vdvg~vIlTKlDGhakGGgAlSaVa--aTksPIiFIGtGE 277 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHAKGGGALSAVA--ATKSPIIFIGTGE 277 (483)
T ss_pred HHhhccceEEEEecccCCCCCceeeehh--hhCCCEEEEecCc
Confidence 334454 3555432 345566654 5678887665554
No 366
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.55 E-value=1.4e+02 Score=28.51 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=33.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|+.. |.+ .|-....+...++.+.+.|.||.++.-.
T Consensus 1 mki~~I~gs--~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 1 MKILGINGS--PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CeeeEEEec--CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 889998875 443 6888888889999999999999999765
No 367
>PLN02208 glycosyltransferase family protein
Probab=22.54 E-value=5e+02 Score=28.23 Aligned_cols=99 Identities=7% Similarity=-0.081 Sum_probs=0.0
Q ss_pred CCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCC-------hhhHHHHHHHHHhCCCceEEEeccChHHHH
Q 008488 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-------KPMEKQLEQLEILYPEKARGVAKFNIPLAH 471 (564)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-------~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~ 471 (564)
.+...+.+..|... .-..+.+.+.+..+......++++=..+ +.+-+-+++.....+ +....+.++.+
T Consensus 249 ~~~sVvyvSfGS~~-~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g--~~v~~W~PQ~~-- 323 (442)
T PLN02208 249 PPKSVVFCSLGSQI-ILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRG--VVWGGWVQQPL-- 323 (442)
T ss_pred CCCcEEEEeccccc-cCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCC--cEeeccCCHHH--
Q ss_pred HHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEE
Q 008488 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV 505 (564)
Q Consensus 472 ~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~ 505 (564)
++++..+-++-+. +--++++||+++|+|+|+
T Consensus 324 -iL~H~~v~~FvtH--cG~nS~~Eai~~GVP~l~ 354 (442)
T PLN02208 324 -ILDHPSIGCFVNH--CGPGTIWESLVSDCQMVL 354 (442)
T ss_pred -HhcCCccCeEEcc--CCchHHHHHHHcCCCEEe
No 368
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=22.39 E-value=1.5e+02 Score=31.63 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||++++. +|++| ..++++|.++||+|.+++.+
T Consensus 59 ~~~kVLVtGa-------tG~IG---~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGA-------TGYIG---KFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEEec
Confidence 4688877664 34444 45788888999999988765
No 369
>PRK07538 hypothetical protein; Provisional
Probab=22.36 E-value=75 Score=33.91 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++|+.- .+|+. +|.+|+++|++|.|+=..
T Consensus 1 ~dV~IVGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 1 MKVLIAGGG------IGGLT-----LALTLHQRGIEVVVFEAA 32 (413)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhCCCcEEEEEcC
Confidence 789999852 36665 777899999999998543
No 370
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.33 E-value=1.1e+02 Score=31.85 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=26.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.|||.+++. |..| ..|+..|+++||+|+++..+.
T Consensus 1 ~~kI~ViGa--------GswG---TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGA--------GSWG---TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcC--------ChHH---HHHHHHHHhcCCeeEEEecCH
Confidence 378888875 2222 448999999999999999864
No 371
>PRK08105 flavodoxin; Provisional
Probab=22.29 E-value=1.3e+02 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.8
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+|-.+.+...|+..|.++|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 4788999999999999999999988764
No 372
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.25 E-value=98 Score=31.89 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. |.+| ..++..|++.||+|.++.++
T Consensus 1 MkI~IiGa--------Ga~G---~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGA--------GSFG---TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECc--------CHHH---HHHHHHHHHCCCeEEEEecC
Confidence 78888874 3333 34778889999999988764
No 373
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=22.22 E-value=74 Score=33.90 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCC-eEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH-RVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh-~V~vitp 126 (564)
|||++|+.- .+|+. +|.+|++.|| +|+|+=.
T Consensus 1 ~~V~IiGgG------iaGla-----~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 1 LRVAIIGGG------IAGVA-----LALNLCKHSHLNVQLFEA 32 (414)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhcCCCCEEEEec
Confidence 789999852 46666 8888999985 9999843
No 374
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=22.16 E-value=55 Score=29.90 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=18.4
Q ss_pred hhhhHHHHHhCCCeEEEEeeC
Q 008488 107 LGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 107 ~~~La~aLa~~Gh~V~vitp~ 127 (564)
-..++..|+++||+|++++++
T Consensus 11 G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 11 GTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp HHHHHHHHHHCTEEEEEETSC
T ss_pred HHHHHHHHHHcCCEEEEEecc
Confidence 445899999999999999986
No 375
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.14 E-value=1.2e+02 Score=28.73 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=20.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++..| =|+. +|..|++.||+|..+=.+
T Consensus 1 M~I~ViGlGy------vGl~-----~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGY------VGLP-----LAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--ST------THHH-----HHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCc------chHH-----HHHHHHhCCCEEEEEeCC
Confidence 8999998642 1333 788999999999888543
No 376
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.94 E-value=4.4e+02 Score=22.73 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=19.7
Q ss_pred EEEEEeccc-cccCHHHHHHHHHhcccCCeEEEEEeCCCh
Q 008488 404 VIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKK 442 (564)
Q Consensus 404 ~i~~iGrl~-~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~ 442 (564)
.++..+... .......+++.+++...+++.+++.|..++
T Consensus 53 ~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 53 VIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred EEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 455555543 233455555555554223666666665553
No 377
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=21.94 E-value=4.5e+02 Score=27.26 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcccCCeE-E-EEEeCCChh---hHHHHHHHHHhCCCceEEEeccChHHH----HHHHHhcCEEEEcCCC-
Q 008488 417 SDILAAAIPHFIKENVQ-I-IVLGTGKKP---MEKQLEQLEILYPEKARGVAKFNIPLA----HMIIAGADFILIPSRF- 486 (564)
Q Consensus 417 ~d~ll~A~~~l~~~~v~-l-vIvG~g~~~---~~~~l~~L~~~~~~~v~~~~~~~~~~~----~~il~~ADv~v~PS~~- 486 (564)
++.-+++++++. ++++ + ++...++.. ..+.++..+.+.+-++....--+..+. ..+....|++..|...
T Consensus 145 v~q~i~lik~~~-Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 145 VAQQIELIKALL-PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHHHHHhC-CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 334444455442 4444 2 455555532 333344444444433333322222222 2244677888888654
Q ss_pred C--CCcHHHHHHHHcCCcEEEcCcc
Q 008488 487 E--PCGLIQLHAMRYGTVPIVASTG 509 (564)
Q Consensus 487 E--~~gl~~lEAma~G~PvI~s~~g 509 (564)
. ++...+.+|....+|+++++++
T Consensus 224 i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeecCCHH
Confidence 3 4555688999999999999954
No 378
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=21.83 E-value=1e+02 Score=29.70 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- +||+| ..+++.|+++|++|.++..+
T Consensus 1 ~~~~lItGa------~g~iG---~~l~~~l~~~g~~v~~~~~~ 34 (247)
T PRK09730 1 MAIALVTGG------SRGIG---RATALLLAQEGYTVAVNYQQ 34 (247)
T ss_pred CCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 565555531 34444 55888999999999876443
No 379
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=21.56 E-value=1.4e+02 Score=29.72 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=21.4
Q ss_pred chHH--HHhhhhHHHHHhCCCeEEEEeeC
Q 008488 101 GGLG--DVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 101 GG~~--~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+| +.+.+|+.+|+++|++|.++=..
T Consensus 11 GGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5555 45688999999999999999543
No 380
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.48 E-value=1.2e+02 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+||+| ..+++.|+++|++|.++..+
T Consensus 13 sggiG---~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 13 SSGIG---AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 46666 45788999999999888765
No 381
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.42 E-value=1.4e+02 Score=29.99 Aligned_cols=55 Identities=13% Similarity=-0.064 Sum_probs=34.7
Q ss_pred CceEEEeccChHHHHHHHHhc--CEEEEcCCCC--CCcHHHHHHHHcCCcEEEcCcccc
Q 008488 457 EKARGVAKFNIPLAHMIIAGA--DFILIPSRFE--PCGLIQLHAMRYGTVPIVASTGGL 511 (564)
Q Consensus 457 ~~v~~~~~~~~~~~~~il~~A--Dv~v~PS~~E--~~gl~~lEAma~G~PvI~s~~gg~ 511 (564)
+-+...+.|+.++-..+++.. |++|.=-.-+ ++--++-=|+.+|+|||.-+-+-.
T Consensus 176 ~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 176 RIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred cEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC
Confidence 345667778777666677744 5555322222 344557778888999998876643
No 382
>PRK06953 short chain dehydrogenase; Provisional
Probab=21.25 E-value=99 Score=29.49 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=17.3
Q ss_pred HhhhhHHHHHhCCCeEEEEeeC
Q 008488 106 VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 106 ~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.-..+++.|+++|++|.++..+
T Consensus 13 iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 13 IGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred hhHHHHHHHHhCCCEEEEEECC
Confidence 4456888899999999888654
No 383
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=21.03 E-value=1e+02 Score=31.79 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=25.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.+| ..++..|++.||+|.++...
T Consensus 2 ~mkI~IiG~--------G~mG---~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGA--------GSIG---CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECC--------CHHH---HHHHHHHHhcCCcEEEEecH
Confidence 489999984 4433 34778889999999999864
No 384
>PRK07588 hypothetical protein; Provisional
Probab=21.02 E-value=85 Score=33.10 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|+|++|+.- .+|+. +|.+|+++|++|.++=..
T Consensus 1 ~~V~IVGgG------~aGl~-----~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAG------IAGPT-----LAYWLRRYGHEPTLIERA 32 (391)
T ss_pred CeEEEECcc------HHHHH-----HHHHHHHCCCceEEEeCC
Confidence 688888852 35655 788899999999999543
No 385
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.84 E-value=1.1e+02 Score=31.67 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=25.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.. -..++..|++.||+|.++.++
T Consensus 4 ~m~I~iIG~--------G~m---G~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGA--------GAW---GTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECc--------CHH---HHHHHHHHHHCCCeEEEEeCC
Confidence 589999984 332 334778888999999999875
No 386
>PRK06180 short chain dehydrogenase; Provisional
Probab=20.84 E-value=1.2e+02 Score=30.12 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=19.1
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+||+| ..+++.|+++|++|.++..+
T Consensus 13 sggiG---~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 13 SSGFG---RALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CChHH---HHHHHHHHhCcCEEEEEeCC
Confidence 45655 45788899999999888764
No 387
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.76 E-value=6.1e+02 Score=24.86 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=29.5
Q ss_pred ccccCCCceEEEEEeeccCccccchHH----------------------HHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 78 MIVCGVGLNILFVGTEVAPWSKTGGLG----------------------DVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 78 ~~~~~~~MkIl~vs~~~~P~~~~GG~~----------------------~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
.+...++.||+|++............+ ..+....+++. .+.++.|++++++
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG 194 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWG 194 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccC
Confidence 444457899999997744311100000 23444444555 5688989888854
No 388
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.72 E-value=6.8e+02 Score=26.57 Aligned_cols=117 Identities=14% Similarity=0.047 Sum_probs=68.2
Q ss_pred hccHHHHHHHHHHhCCCCCCCccEEEEEecccc-ccCHHHHHHHHHhcccCCeEEEEEeCCC-hhhHHHHH--HHH--H-
Q 008488 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLE--QLE--I- 453 (564)
Q Consensus 381 ~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~-~KG~d~ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~--~L~--~- 453 (564)
++.+..+.++.+++|++..++..++ +=+.. .-.+..+++++.... ..+.++|-.+.- ......+- .+. .
T Consensus 161 q~~~~~~~~~~~~lg~~~~~~~~~v---SLF~Ye~~al~~ll~~~~~~~-~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~ 236 (371)
T TIGR03837 161 QADPAAQRALLRRLGVGPEPDALLV---SLFCYENAALPALLDALAQSG-SPVHLLVPEGRALAAVAAWLGDALLAAGDV 236 (371)
T ss_pred hcCHHHHHHHHHHcCCCCCCCCeEE---EEEecCChhHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHhCccccCCccc
Confidence 3455567778889999633333322 22333 334888899888652 456666654322 22222221 010 0
Q ss_pred -hCC-CceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 454 -LYP-EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 454 -~~~-~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
+.+ -.+....-.+.+...+++..||+-++ +-|- +.+-|...|+|.|=-
T Consensus 237 ~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfV--RGED---SFVRAqWAgkPfvWh 286 (371)
T TIGR03837 237 HRRGALTVAVLPFVPQDDYDRLLWACDLNFV--RGED---SFVRAQWAGKPFVWH 286 (371)
T ss_pred cccCceEEEEcCCCChhhHHHHHHhChhcEe--echh---HHHHHHHcCCCceee
Confidence 111 13444444588888899999999887 3343 378889999998843
No 389
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.67 E-value=1.4e+02 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.8
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
.+|-.+.+...|+..+.++|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 478889999999999999999999864
No 390
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=20.49 E-value=1.4e+02 Score=29.81 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=23.0
Q ss_pred eEEEEEeeccCccccchH--HHHhhhhHHHHHhCCCeEEEEee
Q 008488 86 NILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~--~~~~~~La~aLa~~Gh~V~vitp 126 (564)
+|..|+++ .||+ +++..+|+-+|+++|++|-++=.
T Consensus 1 HiIvV~sg------KGGvGKSTva~~lA~aLa~~G~kVg~lD~ 37 (261)
T PF09140_consen 1 HIIVVGSG------KGGVGKSTVAVNLAVALARMGKKVGLLDL 37 (261)
T ss_dssp EEEEEE-S------STTTTHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred CEEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 35556654 3554 56777899999999999999854
No 391
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=20.47 E-value=72 Score=33.65 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.4
Q ss_pred hhhhHHHHHhCCCeEEEEeeC
Q 008488 107 LGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 107 ~~~La~aLa~~Gh~V~vitp~ 127 (564)
+-.|+++|+++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 445899999999999999984
No 392
>PLN00164 glucosyltransferase; Provisional
Probab=20.46 E-value=4.6e+02 Score=28.85 Aligned_cols=57 Identities=11% Similarity=-0.208 Sum_probs=34.3
Q ss_pred eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC----cccccccc-ccCcceeEe
Q 008488 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLVDTV-EEGFTGFQM 524 (564)
Q Consensus 463 ~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~----~gg~~e~v-~~g~~G~l~ 524 (564)
...++.+ +++..++-.+-+. +--.+.+||+++|+|+|+-- ..-....+ +.-+.|+.+
T Consensus 345 ~w~PQ~~---iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~ 406 (480)
T PLN00164 345 TWAPQKE---ILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAM 406 (480)
T ss_pred ecCCHHH---HhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEe
Confidence 3445443 7888775333222 22347999999999999864 33344444 334577764
No 393
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.44 E-value=3.1e+02 Score=30.66 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.1
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 102 G~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|.|.+-..+++.|.++||+|.++-.+
T Consensus 424 G~G~~G~~la~~L~~~g~~vvvId~d 449 (558)
T PRK10669 424 GYGRVGSLLGEKLLAAGIPLVVIETS 449 (558)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEECC
Confidence 34556677999999999999999765
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.33 E-value=3.6e+02 Score=25.83 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHH-----------------HHhcCEEEEcCC
Q 008488 424 IPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI-----------------IAGADFILIPSR 485 (564)
Q Consensus 424 ~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~i-----------------l~~ADv~v~PS~ 485 (564)
++.+.+ .+-+++|+|+|+ .-...-+.-.+.+.+++.+..-..+.+..+ +..+|+++...-
T Consensus 2 ~Pl~l~l~~k~vLVIGgG~--va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~ 79 (202)
T PRK06718 2 MPLMIDLSNKRVVIVGGGK--VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN 79 (202)
T ss_pred cceEEEcCCCEEEEECCCH--HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCcccccccc
Q 008488 486 FEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515 (564)
Q Consensus 486 ~E~~gl~~lEAma~G~PvI~s~~gg~~e~v 515 (564)
.+.....+.+....+.+|-+.|....-+++
T Consensus 80 d~elN~~i~~~a~~~~lvn~~d~~~~~~f~ 109 (202)
T PRK06718 80 DPRVNEQVKEDLPENALFNVITDAESGNVV 109 (202)
T ss_pred CHHHHHHHHHHHHhCCcEEECCCCccCeEE
No 395
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=20.32 E-value=1.4e+02 Score=30.10 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=24.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|+. | .+-..++.+|.+.||+|.++.++
T Consensus 1 m~I~IIG~--------G---~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVGL--------G---LIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEee--------c---HHHHHHHHHHHHCCCEEEEEECC
Confidence 78888874 2 23345888999999999998765
No 396
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=20.14 E-value=1.6e+02 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.5
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 101 GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
-|-.+...+|+.+|+++|++|.++-..
T Consensus 10 ~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 10 VGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp SSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred ccHHHHHHHHHhccccccccccccccC
Confidence 355567788999999999999999765
No 397
>PLN02487 zeta-carotene desaturase
Probab=20.11 E-value=2.1e+02 Score=32.23 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+++|||++|+.- .+|+. .+..|+++||+|+|+=..
T Consensus 73 g~~~~v~iiG~G------~~Gl~-----~a~~L~~~g~~v~i~E~~ 107 (569)
T PLN02487 73 GPKLKVAIIGAG------LAGMS-----TAVELLDQGHEVDIYESR 107 (569)
T ss_pred CCCCeEEEECCC------HHHHH-----HHHHHHhCCCeeEEEecC
Confidence 456899999852 24555 667788899999999654
No 398
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.01 E-value=1.6e+02 Score=28.95 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=27.4
Q ss_pred CceEEEEEeeccCccccchHHH--HhhhhHHHHH-hCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGD--VLGGLPPALA-ANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aLa-~~Gh~V~vitp~ 127 (564)
.|+|+-|.+. .||+|+ ...+|+.+|+ ..||+|.++=-.
T Consensus 1 ~~~iI~v~n~------KGGvGKTT~a~nLa~~La~~~~~kVLliDlD 41 (259)
T COG1192 1 MMKIIAVANQ------KGGVGKTTTAVNLAAALAKRGGKKVLLIDLD 41 (259)
T ss_pred CCEEEEEEec------CCCccHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3677777754 466664 5667999999 566999999544
Done!