Query 008488
Match_columns 564
No_of_seqs 219 out of 2702
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 1.6E-73 5.4E-78 628.2 45.9 467 83-549 8-474 (536)
2 2qzs_A Glycogen synthase; glyc 100.0 1.8E-45 6.3E-50 399.1 39.2 421 85-548 1-437 (485)
3 1rzu_A Glycogen synthase 1; gl 100.0 3.3E-45 1.1E-49 397.1 36.8 423 85-548 1-436 (485)
4 3fro_A GLGA glycogen synthase; 100.0 1.8E-43 6.1E-48 376.1 38.0 385 83-548 1-391 (439)
5 3c48_A Predicted glycosyltrans 100.0 1.8E-37 6.3E-42 331.2 32.0 361 75-548 11-387 (438)
6 2r60_A Glycosyl transferase, g 100.0 1.6E-36 5.4E-41 330.5 31.4 369 84-548 7-420 (499)
7 3okp_A GDP-mannose-dependent a 100.0 8.2E-36 2.8E-40 312.8 32.2 327 82-548 2-340 (394)
8 3s28_A Sucrose synthase 1; gly 100.0 8.3E-36 2.8E-40 339.4 23.3 389 83-547 277-725 (816)
9 2iw1_A Lipopolysaccharide core 100.0 1.5E-35 5.3E-40 308.8 16.1 325 85-548 1-333 (374)
10 2jjm_A Glycosyl transferase, g 100.0 8.4E-34 2.9E-38 299.0 29.0 330 84-548 13-346 (394)
11 2iuy_A Avigt4, glycosyltransfe 100.0 3.2E-34 1.1E-38 296.4 24.4 283 82-550 1-306 (342)
12 2x6q_A Trehalose-synthase TRET 100.0 3.9E-33 1.3E-37 296.1 28.4 326 82-548 38-375 (416)
13 2gek_A Phosphatidylinositol ma 100.0 2.9E-33 1E-37 294.8 24.2 323 82-548 18-345 (406)
14 3oy2_A Glycosyltransferase B73 100.0 2.7E-32 9.3E-37 289.1 23.6 318 85-549 1-352 (413)
15 3nb0_A Glycogen [starch] synth 100.0 6E-33 2.1E-37 303.6 18.9 386 87-524 30-573 (725)
16 2x0d_A WSAF; GT4 family, trans 100.0 1.4E-29 4.7E-34 270.0 20.2 322 82-547 44-374 (413)
17 2c4m_A Glycogen phosphorylase; 99.9 1.7E-26 5.7E-31 256.5 27.0 321 201-526 263-668 (796)
18 1l5w_A Maltodextrin phosphoryl 99.9 1.2E-26 4.1E-31 257.6 25.0 319 201-526 273-678 (796)
19 2hy7_A Glucuronosyltransferase 99.9 1.2E-26 4.2E-31 246.6 20.7 173 307-548 169-348 (406)
20 1f0k_A MURG, UDP-N-acetylgluco 99.9 7.6E-26 2.6E-30 235.2 23.6 305 84-549 6-322 (364)
21 1uqt_A Alpha, alpha-trehalose- 99.9 7.4E-25 2.5E-29 237.3 21.2 257 228-549 124-416 (482)
22 3beo_A UDP-N-acetylglucosamine 99.9 8.4E-24 2.9E-28 220.4 26.7 190 309-548 142-338 (375)
23 2bfw_A GLGA glycogen synthase; 99.9 1.5E-24 5E-29 206.5 16.6 168 352-548 1-176 (200)
24 1vgv_A UDP-N-acetylglucosamine 99.9 1.6E-23 5.4E-28 219.3 23.4 245 227-548 86-338 (384)
25 3t5t_A Putative glycosyltransf 99.9 1.9E-23 6.4E-28 224.8 20.9 255 228-549 150-435 (496)
26 2vsy_A XCC0866; transferase, g 99.9 1.1E-23 3.7E-28 232.6 18.6 160 316-517 328-507 (568)
27 2gj4_A Glycogen phosphorylase, 99.9 5.9E-24 2E-28 236.8 16.4 295 227-527 320-703 (824)
28 2f9f_A First mannosyl transfer 99.9 6.1E-21 2.1E-25 178.8 15.6 135 401-548 22-158 (177)
29 3qhp_A Type 1 capsular polysac 99.8 9.1E-21 3.1E-25 174.8 14.2 132 402-548 2-136 (166)
30 1v4v_A UDP-N-acetylglucosamine 99.8 5.2E-20 1.8E-24 192.2 21.2 182 314-548 144-330 (376)
31 2xci_A KDO-transferase, 3-deox 99.8 1.4E-18 4.7E-23 182.6 21.9 182 309-548 146-342 (374)
32 3rhz_A GTF3, nucleotide sugar 99.7 4.9E-16 1.7E-20 160.7 25.2 217 227-547 74-299 (339)
33 3dzc_A UDP-N-acetylglucosamine 99.7 3.2E-16 1.1E-20 165.7 24.0 197 309-547 158-362 (396)
34 3ot5_A UDP-N-acetylglucosamine 99.7 7.9E-16 2.7E-20 163.1 23.7 184 315-547 168-356 (403)
35 3otg_A CALG1; calicheamicin, T 99.6 8.8E-16 3E-20 162.0 14.5 125 401-548 242-372 (412)
36 4fzr_A SSFS6; structural genom 99.5 1.2E-13 4.1E-18 145.3 13.6 121 401-547 227-363 (398)
37 2iyf_A OLED, oleandomycin glyc 99.5 2.2E-12 7.4E-17 137.0 19.9 124 401-548 232-363 (430)
38 3s2u_A UDP-N-acetylglucosamine 99.4 8E-12 2.7E-16 130.5 23.0 126 403-547 182-319 (365)
39 4hwg_A UDP-N-acetylglucosamine 99.4 7.1E-12 2.4E-16 131.8 17.4 185 315-547 145-337 (385)
40 3oti_A CALG3; calicheamicin, T 99.4 5.1E-12 1.7E-16 132.9 16.1 120 401-543 232-360 (398)
41 3tsa_A SPNG, NDP-rhamnosyltran 99.4 1.2E-12 4E-17 137.2 11.1 123 402-547 219-351 (391)
42 3ia7_A CALG4; glycosysltransfe 99.3 7.8E-11 2.7E-15 123.2 20.1 121 401-547 231-361 (402)
43 2p6p_A Glycosyl transferase; X 99.3 2.3E-10 7.9E-15 119.4 19.9 119 402-547 211-342 (384)
44 3rsc_A CALG2; TDP, enediyne, s 99.2 2.5E-10 8.4E-15 120.4 17.9 121 401-547 247-376 (415)
45 1ygp_A Yeast glycogen phosphor 99.1 5.8E-09 2E-13 116.1 21.1 220 306-527 467-762 (879)
46 2yjn_A ERYCIII, glycosyltransf 98.8 2E-08 6.8E-13 107.0 14.3 121 402-548 268-399 (441)
47 3h4t_A Glycosyltransferase GTF 98.8 1.2E-07 4E-12 100.0 20.0 122 401-549 221-349 (404)
48 2iya_A OLEI, oleandomycin glyc 98.8 4.8E-07 1.7E-11 95.5 21.7 123 401-547 255-384 (424)
49 4amg_A Snogd; transferase, pol 98.7 2.3E-07 7.8E-12 96.8 18.1 110 402-524 238-352 (400)
50 2o6l_A UDP-glucuronosyltransfe 98.6 9.8E-08 3.3E-12 87.8 8.4 118 402-548 22-150 (170)
51 3q3e_A HMW1C-like glycosyltran 98.5 2.8E-06 9.6E-11 93.0 18.0 112 392-508 431-549 (631)
52 1rrv_A Glycosyltransferase GTF 98.5 1.5E-05 5.3E-10 83.8 22.6 121 402-548 238-366 (416)
53 1iir_A Glycosyltransferase GTF 97.5 9.2E-05 3.1E-09 77.8 6.7 119 402-548 239-365 (415)
54 3tov_A Glycosyl transferase fa 97.2 0.035 1.2E-06 56.8 21.7 111 389-507 174-287 (349)
55 1psw_A ADP-heptose LPS heptosy 96.5 0.0098 3.3E-07 60.4 10.7 114 386-507 166-287 (348)
56 4gyw_A UDP-N-acetylglucosamine 96.2 0.027 9.1E-07 63.6 12.3 111 391-507 514-629 (723)
57 3hbm_A UDP-sugar hydrolase; PS 96.1 0.022 7.7E-07 56.5 10.1 93 403-507 159-251 (282)
58 3l7i_A Teichoic acid biosynthe 91.1 2.4 8.3E-05 47.4 14.7 197 314-550 476-681 (729)
59 2gt1_A Lipopolysaccharide hept 89.7 1.9 6.5E-05 42.8 11.1 97 403-506 180-278 (326)
60 3hbf_A Flavonoid 3-O-glucosylt 87.9 1.6 5.6E-05 46.1 9.5 115 402-524 274-394 (454)
61 2jzc_A UDP-N-acetylglucosamine 87.2 0.74 2.5E-05 43.9 5.7 37 468-508 123-160 (224)
62 2c1x_A UDP-glucose flavonoid 3 86.3 0.87 3E-05 48.1 6.2 113 401-524 271-392 (456)
63 2acv_A Triterpene UDP-glucosyl 83.7 2.3 7.8E-05 44.9 8.0 114 402-524 277-399 (463)
64 2pq6_A UDP-glucuronosyl/UDP-gl 83.0 4 0.00014 43.2 9.7 110 402-524 296-420 (482)
65 1iir_A Glycosyltransferase GTF 75.8 2.2 7.4E-05 44.0 4.6 37 85-127 1-37 (415)
66 2vch_A Hydroquinone glucosyltr 75.3 11 0.00036 39.9 9.9 40 83-128 5-45 (480)
67 2hy5_A Putative sulfurtransfer 74.8 4 0.00014 34.9 5.3 40 85-127 1-41 (130)
68 2d1p_A TUSD, hypothetical UPF0 73.5 4.5 0.00015 35.3 5.3 41 84-127 12-53 (140)
69 4gi5_A Quinone reductase; prot 71.3 4.6 0.00016 39.6 5.4 42 81-126 19-61 (280)
70 4b4o_A Epimerase family protei 69.6 3.2 0.00011 40.4 3.9 33 85-127 1-33 (298)
71 3ty2_A 5'-nucleotidase SURE; s 64.6 4.6 0.00016 39.1 3.7 39 83-129 10-48 (261)
72 4f3y_A DHPR, dihydrodipicolina 59.4 9.1 0.00031 37.3 4.9 44 470-513 67-110 (272)
73 3ew7_A LMO0794 protein; Q8Y8U8 59.4 7.2 0.00025 35.6 4.0 33 85-127 1-33 (221)
74 3mc3_A DSRE/DSRF-like family p 58.8 13 0.00044 31.9 5.3 42 83-127 14-55 (134)
75 2pq6_A UDP-glucuronosyl/UDP-gl 58.8 8.6 0.00029 40.5 5.0 39 83-127 7-45 (482)
76 3h2s_A Putative NADH-flavin re 57.9 7.9 0.00027 35.5 4.0 33 85-127 1-33 (224)
77 1hdo_A Biliverdin IX beta redu 57.7 9.8 0.00034 34.2 4.6 34 84-127 3-36 (206)
78 3hly_A Flavodoxin-like domain; 57.6 11 0.00037 33.3 4.7 38 85-127 1-38 (161)
79 1jx7_A Hypothetical protein YC 57.5 11 0.00038 30.9 4.5 40 85-127 2-43 (117)
80 3kb6_A D-lactate dehydrogenase 57.0 26 0.00089 35.1 7.9 44 470-513 188-236 (334)
81 3e8x_A Putative NAD-dependent 56.0 9.2 0.00031 35.6 4.2 36 82-127 19-54 (236)
82 3auf_A Glycinamide ribonucleot 54.9 26 0.0009 33.1 7.1 35 84-127 22-58 (229)
83 3f6r_A Flavodoxin; FMN binding 53.8 16 0.00054 31.3 5.1 38 85-127 2-39 (148)
84 4hb9_A Similarities with proba 52.8 7.9 0.00027 39.0 3.4 30 84-124 1-30 (412)
85 2hy5_B Intracellular sulfur ox 51.8 14 0.00048 31.9 4.3 41 84-127 4-45 (136)
86 2vch_A Hydroquinone glucosyltr 50.9 11 0.00039 39.6 4.3 51 472-524 351-406 (480)
87 3grc_A Sensor protein, kinase; 50.7 1E+02 0.0034 25.1 10.2 106 431-549 6-124 (140)
88 1f4p_A Flavodoxin; electron tr 50.7 16 0.00054 31.3 4.6 38 85-127 1-38 (147)
89 3dqp_A Oxidoreductase YLBE; al 50.6 10 0.00035 34.8 3.5 33 85-127 1-33 (219)
90 2d1p_B TUSC, hypothetical UPF0 50.1 19 0.00063 30.1 4.7 39 86-127 3-41 (119)
91 2e6c_A 5'-nucleotidase SURE; S 49.8 11 0.00038 36.1 3.6 37 85-129 1-37 (244)
92 3ijp_A DHPR, dihydrodipicolina 49.4 14 0.00046 36.4 4.2 44 470-513 82-125 (288)
93 3kjh_A CO dehydrogenase/acetyl 49.1 12 0.00041 34.9 3.7 37 85-127 1-37 (254)
94 2phj_A 5'-nucleotidase SURE; S 48.7 12 0.0004 36.0 3.6 37 85-129 2-38 (251)
95 1j9j_A Stationary phase surviV 48.3 12 0.00041 35.9 3.6 37 85-129 1-37 (247)
96 4dzz_A Plasmid partitioning pr 47.1 18 0.00061 32.6 4.5 39 85-127 1-39 (206)
97 2a5l_A Trp repressor binding p 46.7 23 0.00079 31.9 5.2 39 84-127 5-43 (200)
98 3nbm_A PTS system, lactose-spe 46.5 29 0.001 28.6 5.3 45 83-133 5-49 (108)
99 2pzm_A Putative nucleotide sug 46.3 13 0.00046 36.5 3.8 39 79-127 15-53 (330)
100 1l5x_A SurviVal protein E; str 45.4 14 0.00046 36.2 3.5 37 85-129 1-37 (280)
101 3tem_A Ribosyldihydronicotinam 44.5 22 0.00074 33.5 4.7 40 84-127 1-41 (228)
102 2v4n_A Multifunctional protein 43.9 16 0.00055 35.2 3.7 38 84-129 1-38 (254)
103 3d7l_A LIN1944 protein; APC893 43.7 17 0.00058 32.7 3.8 34 83-127 2-35 (202)
104 1ydg_A Trp repressor binding p 43.4 29 0.00099 31.7 5.4 39 84-127 6-44 (211)
105 1lss_A TRK system potassium up 43.3 21 0.00072 29.7 4.1 33 84-127 4-36 (140)
106 3fgn_A Dethiobiotin synthetase 42.3 33 0.0011 32.8 5.7 41 82-126 23-63 (251)
107 2zay_A Response regulator rece 42.2 1E+02 0.0036 25.2 8.5 105 431-548 8-124 (147)
108 3heb_A Response regulator rece 41.9 1.3E+02 0.0045 24.8 9.2 108 431-549 4-132 (152)
109 3tqr_A Phosphoribosylglycinami 41.8 30 0.001 32.3 5.2 36 83-127 4-40 (215)
110 2pi1_A D-lactate dehydrogenase 40.9 94 0.0032 30.9 9.1 44 470-513 188-236 (334)
111 2ywr_A Phosphoribosylglycinami 40.9 27 0.00093 32.6 4.7 34 85-127 2-37 (216)
112 3to5_A CHEY homolog; alpha(5)b 40.3 1.4E+02 0.0047 25.2 8.9 30 83-122 11-40 (134)
113 1xv5_A AGT, DNA alpha-glucosyl 40.2 47 0.0016 30.8 6.0 135 404-548 199-363 (401)
114 2z1m_A GDP-D-mannose dehydrata 40.0 20 0.0007 35.0 4.0 35 83-127 2-36 (345)
115 2zki_A 199AA long hypothetical 39.8 28 0.00095 31.4 4.6 38 84-127 4-41 (199)
116 2x4g_A Nucleoside-diphosphate- 39.5 25 0.00084 34.4 4.5 35 84-128 13-47 (342)
117 3vnd_A TSA, tryptophan synthas 39.4 2.1E+02 0.0071 27.4 11.0 123 402-530 96-240 (267)
118 3of5_A Dethiobiotin synthetase 39.2 36 0.0012 31.9 5.3 40 83-126 2-41 (228)
119 3hdv_A Response regulator; PSI 39.1 1.5E+02 0.0051 23.8 9.3 106 431-549 7-124 (136)
120 2pln_A HP1043, response regula 39.1 1.1E+02 0.0038 24.8 8.1 103 431-549 18-130 (137)
121 3pp8_A Glyoxylate/hydroxypyruv 38.7 60 0.0021 32.1 7.2 46 468-513 185-235 (315)
122 1wcv_1 SOJ, segregation protei 38.6 25 0.00086 33.2 4.2 39 83-127 4-44 (257)
123 2afh_E Nitrogenase iron protei 38.4 33 0.0011 33.0 5.2 39 84-127 1-39 (289)
124 3i6i_A Putative leucoanthocyan 38.2 23 0.00078 35.0 4.0 36 82-127 8-43 (346)
125 3bfv_A CAPA1, CAPB2, membrane 37.7 34 0.0012 33.0 5.0 41 83-127 80-120 (271)
126 2qsj_A DNA-binding response re 37.5 1.7E+02 0.0059 24.1 9.8 107 431-548 3-120 (154)
127 3ea0_A ATPase, para family; al 37.3 29 0.001 32.1 4.4 41 83-127 2-43 (245)
128 3dhn_A NAD-dependent epimerase 37.3 27 0.00093 31.9 4.1 33 85-127 5-37 (227)
129 3b6i_A Flavoprotein WRBA; flav 37.2 37 0.0013 30.4 5.0 38 85-127 2-40 (198)
130 3jte_A Response regulator rece 37.1 1.7E+02 0.0057 23.8 10.4 105 432-549 4-120 (143)
131 3mcu_A Dipicolinate synthase, 36.9 33 0.0011 31.8 4.6 36 84-127 5-42 (207)
132 1k68_A Phytochrome response re 36.7 1.6E+02 0.0055 23.5 10.3 107 432-549 3-128 (140)
133 1jkx_A GART;, phosphoribosylgl 36.2 52 0.0018 30.5 5.9 34 85-127 1-36 (212)
134 3gpi_A NAD-dependent epimerase 35.8 30 0.001 33.0 4.4 35 83-128 2-36 (286)
135 3cg4_A Response regulator rece 35.8 1.7E+02 0.0057 23.7 8.7 108 430-550 6-125 (142)
136 1kjn_A MTH0777; hypotethical p 35.7 53 0.0018 28.8 5.2 41 82-126 4-44 (157)
137 2yq5_A D-isomer specific 2-hyd 35.5 1.1E+02 0.0039 30.5 8.7 44 470-513 194-242 (343)
138 4ds3_A Phosphoribosylglycinami 35.1 39 0.0013 31.4 4.7 37 82-127 5-43 (209)
139 3lqk_A Dipicolinate synthase s 34.9 33 0.0011 31.7 4.2 36 84-127 7-44 (201)
140 1j4a_A D-LDH, D-lactate dehydr 34.5 1E+02 0.0035 30.5 8.2 44 470-513 193-241 (333)
141 3ko8_A NAD-dependent epimerase 34.5 34 0.0012 33.0 4.5 33 85-127 1-33 (312)
142 3nav_A Tryptophan synthase alp 34.4 2.3E+02 0.0078 27.2 10.4 123 402-530 98-242 (271)
143 3ego_A Probable 2-dehydropanto 34.3 32 0.0011 33.7 4.3 32 84-127 2-33 (307)
144 3n53_A Response regulator rece 34.1 1.8E+02 0.0063 23.4 9.2 105 432-550 4-120 (140)
145 3kht_A Response regulator; PSI 34.1 1.9E+02 0.0064 23.5 10.6 108 431-549 5-125 (144)
146 4id9_A Short-chain dehydrogena 34.1 26 0.00088 34.5 3.6 36 82-127 17-52 (347)
147 2qvg_A Two component response 34.0 1.9E+02 0.0063 23.4 9.3 103 431-546 7-129 (143)
148 1fjh_A 3alpha-hydroxysteroid d 33.9 33 0.0011 32.1 4.2 34 85-127 1-34 (257)
149 3i83_A 2-dehydropantoate 2-red 33.9 30 0.001 34.0 4.1 33 84-127 2-34 (320)
150 2dkn_A 3-alpha-hydroxysteroid 33.8 33 0.0011 31.8 4.1 25 100-127 10-34 (255)
151 4g65_A TRK system potassium up 33.8 15 0.00052 38.6 1.9 103 415-517 219-344 (461)
152 1bg6_A N-(1-D-carboxylethyl)-L 33.6 36 0.0012 33.7 4.7 34 83-127 3-36 (359)
153 3ilh_A Two component response 33.4 1.9E+02 0.0065 23.3 11.3 108 431-549 9-136 (146)
154 3oet_A Erythronate-4-phosphate 33.4 1.4E+02 0.0049 30.3 9.1 98 431-530 119-240 (381)
155 2xj4_A MIPZ; replication, cell 33.2 38 0.0013 32.6 4.6 39 85-127 4-42 (286)
156 3m2p_A UDP-N-acetylglucosamine 33.1 33 0.0011 33.2 4.2 34 84-127 2-35 (311)
157 3q9l_A Septum site-determining 32.8 43 0.0015 31.2 4.9 39 85-127 2-40 (260)
158 1rpn_A GDP-mannose 4,6-dehydra 32.7 33 0.0011 33.5 4.1 35 83-127 13-47 (335)
159 3fni_A Putative diflavin flavo 32.3 62 0.0021 28.2 5.5 39 84-127 4-42 (159)
160 1dxy_A D-2-hydroxyisocaproate 32.3 1E+02 0.0036 30.5 7.8 44 470-513 191-239 (333)
161 2ydy_A Methionine adenosyltran 32.2 30 0.001 33.4 3.7 34 84-127 2-35 (315)
162 1xdw_A NAD+-dependent (R)-2-hy 32.2 90 0.0031 30.9 7.3 44 470-513 192-240 (331)
163 3l4b_C TRKA K+ channel protien 32.2 37 0.0013 31.1 4.2 32 85-127 1-32 (218)
164 3da8_A Probable 5'-phosphoribo 32.0 52 0.0018 30.7 5.1 39 82-129 10-49 (215)
165 3vps_A TUNA, NAD-dependent epi 31.9 32 0.0011 33.1 3.9 34 84-127 7-40 (321)
166 3ruf_A WBGU; rossmann fold, UD 31.8 33 0.0011 33.8 4.0 35 83-127 24-58 (351)
167 3g17_A Similar to 2-dehydropan 31.7 23 0.00079 34.4 2.7 33 84-127 2-34 (294)
168 2ph1_A Nucleotide-binding prot 31.5 50 0.0017 31.2 5.1 39 85-127 18-56 (262)
169 2ew2_A 2-dehydropantoate 2-red 31.5 34 0.0012 33.1 3.9 34 83-127 2-35 (316)
170 3to5_A CHEY homolog; alpha(5)b 31.5 2.3E+02 0.0079 23.7 10.1 109 429-549 10-130 (134)
171 3eag_A UDP-N-acetylmuramate:L- 31.4 39 0.0013 33.4 4.4 32 84-125 4-35 (326)
172 3cio_A ETK, tyrosine-protein k 31.4 51 0.0017 32.2 5.2 41 83-127 102-142 (299)
173 1dbw_A Transcriptional regulat 31.3 1.9E+02 0.0066 22.8 9.4 106 431-549 3-118 (126)
174 4huj_A Uncharacterized protein 31.3 41 0.0014 31.0 4.3 35 82-127 21-55 (220)
175 3guy_A Short-chain dehydrogena 31.3 31 0.001 31.9 3.4 34 85-127 1-34 (230)
176 2o4c_A Erythronate-4-phosphate 31.2 1.5E+02 0.0052 30.1 8.8 45 470-514 161-214 (380)
177 2bka_A CC3, TAT-interacting pr 31.1 38 0.0013 31.2 4.1 36 83-128 17-54 (242)
178 1e6u_A GDP-fucose synthetase; 31.0 25 0.00084 34.1 2.8 34 83-126 2-35 (321)
179 3oh8_A Nucleoside-diphosphate 31.0 38 0.0013 35.8 4.5 35 84-128 147-181 (516)
180 3lte_A Response regulator; str 30.9 2E+02 0.0068 22.8 9.6 106 431-549 6-122 (132)
181 3un1_A Probable oxidoreductase 30.8 94 0.0032 29.2 6.9 34 85-127 28-61 (260)
182 1cp2_A CP2, nitrogenase iron p 30.7 49 0.0017 31.2 4.9 38 85-127 1-38 (269)
183 1g3q_A MIND ATPase, cell divis 30.7 51 0.0017 30.3 4.9 39 85-127 2-40 (237)
184 1id1_A Putative potassium chan 30.5 44 0.0015 28.6 4.2 34 83-127 2-35 (153)
185 3end_A Light-independent proto 30.5 50 0.0017 32.0 5.0 40 83-127 39-78 (307)
186 3gt7_A Sensor protein; structu 30.4 1.2E+02 0.0042 25.3 7.1 105 431-548 7-123 (154)
187 3kkj_A Amine oxidase, flavin-c 30.4 29 0.00099 31.5 3.1 29 85-124 3-31 (336)
188 1wwk_A Phosphoglycerate dehydr 30.4 1.7E+02 0.0056 28.6 8.8 44 470-513 190-238 (307)
189 3evt_A Phosphoglycerate dehydr 30.1 1.1E+02 0.0037 30.4 7.4 45 469-513 184-233 (324)
190 3c1o_A Eugenol synthase; pheny 30.1 32 0.0011 33.3 3.5 34 84-127 4-37 (321)
191 3qvl_A Putative hydantoin race 30.0 1.7E+02 0.0059 27.5 8.6 39 84-127 1-39 (245)
192 3hzh_A Chemotaxis response reg 29.9 2.4E+02 0.0082 23.4 10.7 106 432-549 37-154 (157)
193 1hyq_A MIND, cell division inh 29.9 54 0.0019 30.7 5.0 39 85-127 2-40 (263)
194 1rkx_A CDP-glucose-4,6-dehydra 29.8 37 0.0013 33.5 4.0 35 83-127 8-42 (357)
195 2hun_A 336AA long hypothetical 29.7 33 0.0011 33.4 3.5 35 83-127 2-38 (336)
196 4hy3_A Phosphoglycerate oxidor 29.7 1.3E+02 0.0044 30.4 8.0 44 470-513 224-272 (365)
197 2r85_A PURP protein PF1517; AT 29.7 35 0.0012 33.3 3.7 32 84-127 2-33 (334)
198 4dgs_A Dehydrogenase; structur 29.6 1.3E+02 0.0043 30.1 7.8 45 469-513 215-264 (340)
199 3av3_A Phosphoribosylglycinami 29.5 60 0.002 30.1 5.1 34 85-127 4-39 (212)
200 2gk4_A Conserved hypothetical 29.4 41 0.0014 31.9 3.9 26 99-127 27-52 (232)
201 3m6m_D Sensory/regulatory prot 29.3 2.3E+02 0.008 23.1 8.9 106 431-549 14-133 (143)
202 3hn2_A 2-dehydropantoate 2-red 29.3 37 0.0013 33.3 3.8 33 84-127 2-34 (312)
203 3t6k_A Response regulator rece 29.3 2.2E+02 0.0077 22.9 9.2 105 432-549 5-121 (136)
204 1z82_A Glycerol-3-phosphate de 29.3 40 0.0014 33.3 4.1 34 83-127 13-46 (335)
205 1xq6_A Unknown protein; struct 29.3 49 0.0017 30.4 4.5 35 83-127 3-39 (253)
206 2b69_A UDP-glucuronate decarbo 29.3 41 0.0014 32.9 4.2 35 83-127 26-60 (343)
207 2ark_A Flavodoxin; FMN, struct 29.3 49 0.0017 29.6 4.4 38 85-127 5-43 (188)
208 1y1p_A ARII, aldehyde reductas 29.2 45 0.0015 32.4 4.4 35 83-127 10-44 (342)
209 2hna_A Protein MIOC, flavodoxi 29.1 42 0.0014 28.6 3.7 36 85-125 2-37 (147)
210 3zq6_A Putative arsenical pump 28.9 65 0.0022 31.7 5.5 42 83-128 11-52 (324)
211 1bvy_F Protein (cytochrome P45 28.8 49 0.0017 30.0 4.3 39 84-127 21-59 (191)
212 3slg_A PBGP3 protein; structur 28.7 46 0.0016 33.0 4.5 37 82-128 22-59 (372)
213 2ekl_A D-3-phosphoglycerate de 28.7 2E+02 0.0067 28.1 9.1 44 470-513 190-238 (313)
214 2vzf_A NADH-dependent FMN redu 28.6 56 0.0019 29.5 4.7 40 85-127 3-43 (197)
215 4e7p_A Response regulator; DNA 28.4 2.5E+02 0.0084 23.0 10.4 109 431-550 20-138 (150)
216 2q62_A ARSH; alpha/beta, flavo 28.3 64 0.0022 30.7 5.1 42 83-127 33-74 (247)
217 3f6c_A Positive transcription 28.2 2.2E+02 0.0077 22.5 9.6 106 432-549 2-117 (134)
218 4dio_A NAD(P) transhydrogenase 28.0 2E+02 0.0069 29.4 9.1 50 468-517 267-324 (405)
219 1p9l_A Dihydrodipicolinate red 27.9 1.5E+02 0.0051 28.1 7.7 78 433-513 2-82 (245)
220 3k96_A Glycerol-3-phosphate de 27.9 40 0.0014 34.0 3.8 34 83-127 28-61 (356)
221 2cuk_A Glycerate dehydrogenase 27.9 1.2E+02 0.0042 29.7 7.3 44 470-513 187-235 (311)
222 1i3c_A Response regulator RCP1 27.8 2.5E+02 0.0086 23.0 10.6 108 431-549 8-134 (149)
223 2p5y_A UDP-glucose 4-epimerase 27.8 39 0.0013 32.6 3.6 32 85-126 1-32 (311)
224 2j48_A Two-component sensor ki 27.7 2E+02 0.0069 21.8 9.4 104 433-549 3-115 (119)
225 1e2b_A Enzyme IIB-cellobiose; 27.7 82 0.0028 25.6 5.1 44 83-132 2-45 (106)
226 3h1g_A Chemotaxis protein CHEY 27.5 2.3E+02 0.0079 22.5 10.3 105 432-548 6-123 (129)
227 1ykg_A SIR-FP, sulfite reducta 27.3 36 0.0012 29.9 3.0 37 85-126 10-46 (167)
228 3ghy_A Ketopantoate reductase 27.2 39 0.0013 33.5 3.6 34 83-127 2-35 (335)
229 2a35_A Hypothetical protein PA 27.1 40 0.0014 30.3 3.4 34 84-127 5-40 (215)
230 3dtt_A NADP oxidoreductase; st 27.1 51 0.0017 30.9 4.2 34 83-127 18-51 (245)
231 3pg5_A Uncharacterized protein 27.0 43 0.0015 33.7 3.8 37 85-127 1-39 (361)
232 3hdg_A Uncharacterized protein 27.0 2.4E+02 0.0082 22.5 9.8 106 431-549 7-122 (137)
233 1iow_A DD-ligase, DDLB, D-ALA\ 26.9 40 0.0014 32.4 3.5 39 84-127 2-43 (306)
234 3tqq_A Methionyl-tRNA formyltr 26.8 68 0.0023 31.7 5.2 34 83-127 1-34 (314)
235 1ek6_A UDP-galactose 4-epimera 26.8 47 0.0016 32.5 4.1 34 84-127 2-35 (348)
236 2gas_A Isoflavone reductase; N 26.6 36 0.0012 32.6 3.1 34 84-127 2-35 (307)
237 3gvx_A Glycerate dehydrogenase 26.5 1.1E+02 0.0037 29.8 6.6 45 469-513 166-215 (290)
238 3l77_A Short-chain alcohol deh 26.4 52 0.0018 30.3 4.1 34 85-127 2-35 (235)
239 1meo_A Phosophoribosylglycinam 26.1 1.9E+02 0.0065 26.6 7.9 36 85-129 1-38 (209)
240 3la6_A Tyrosine-protein kinase 26.0 68 0.0023 31.1 5.0 41 83-127 90-130 (286)
241 1ka9_F Imidazole glycerol phos 25.8 2.6E+02 0.0091 25.7 9.1 68 475-546 164-242 (252)
242 1ks9_A KPA reductase;, 2-dehyd 25.7 50 0.0017 31.4 4.0 32 85-127 1-32 (291)
243 3cnb_A DNA-binding response re 25.7 2.6E+02 0.0087 22.4 9.8 107 431-549 8-127 (143)
244 3k9g_A PF-32 protein; ssgcid, 25.7 51 0.0017 31.1 3.9 40 83-127 25-64 (267)
245 3q0i_A Methionyl-tRNA formyltr 25.4 59 0.002 32.3 4.4 35 82-127 5-39 (318)
246 1k66_A Phytochrome response re 25.4 2.6E+02 0.009 22.4 9.7 106 431-549 6-135 (149)
247 1sqs_A Conserved hypothetical 25.3 68 0.0023 30.0 4.7 40 85-127 2-42 (242)
248 3hg7_A D-isomer specific 2-hyd 25.3 93 0.0032 30.9 5.9 47 468-514 186-237 (324)
249 2acv_A Triterpene UDP-glucosyl 25.2 54 0.0018 34.1 4.4 39 84-128 9-49 (463)
250 1udb_A Epimerase, UDP-galactos 25.1 48 0.0016 32.3 3.8 32 85-126 1-32 (338)
251 3bq9_A Predicted rossmann fold 25.0 3E+02 0.01 28.6 9.7 100 402-507 145-285 (460)
252 1t0i_A YLR011WP; FMN binding p 24.9 86 0.0029 27.8 5.2 40 85-127 1-46 (191)
253 3gg9_A D-3-phosphoglycerate de 24.7 1.3E+02 0.0046 30.0 7.1 45 470-514 209-258 (352)
254 1d4a_A DT-diaphorase, quinone 24.7 83 0.0028 30.2 5.3 39 85-127 3-42 (273)
255 3en0_A Cyanophycinase; serine 24.6 2.6E+02 0.0089 27.1 8.9 108 404-511 28-156 (291)
256 1gy8_A UDP-galactose 4-epimera 24.6 59 0.002 32.5 4.4 34 84-127 2-36 (397)
257 2rjn_A Response regulator rece 24.6 2.3E+02 0.008 23.2 7.8 106 431-549 7-123 (154)
258 3ph3_A Ribose-5-phosphate isom 24.6 73 0.0025 28.5 4.4 43 77-127 13-55 (169)
259 2y88_A Phosphoribosyl isomeras 24.6 2.1E+02 0.0071 26.4 8.1 74 468-545 153-241 (244)
260 1p9o_A Phosphopantothenoylcyst 24.5 63 0.0021 32.0 4.4 22 106-127 67-88 (313)
261 1duv_G Octase-1, ornithine tra 24.5 2.2E+02 0.0076 28.3 8.5 105 353-485 124-233 (333)
262 1byi_A Dethiobiotin synthase; 24.4 79 0.0027 28.7 4.9 24 101-124 13-36 (224)
263 4g2n_A D-isomer specific 2-hyd 24.4 1.7E+02 0.0057 29.3 7.6 44 470-513 221-269 (345)
264 3rp8_A Flavoprotein monooxygen 24.3 49 0.0017 33.4 3.7 34 83-127 22-55 (407)
265 3kkl_A Probable chaperone prot 24.3 76 0.0026 30.0 4.9 45 84-128 3-52 (244)
266 4fo4_A Inosine 5'-monophosphat 24.2 3.1E+02 0.01 27.6 9.6 102 431-532 120-247 (366)
267 3g0o_A 3-hydroxyisobutyrate de 24.1 57 0.0019 31.7 4.0 34 83-127 6-39 (303)
268 3crn_A Response regulator rece 24.1 2.7E+02 0.0093 22.1 8.0 105 432-549 4-118 (132)
269 3qvo_A NMRA family protein; st 24.1 48 0.0016 30.6 3.4 26 100-128 32-58 (236)
270 3f2v_A General stress protein 24.0 45 0.0015 30.4 3.0 37 85-126 2-38 (192)
271 3uuw_A Putative oxidoreductase 23.9 1.4E+02 0.0048 28.7 6.9 90 403-506 7-96 (308)
272 1mx3_A CTBP1, C-terminal bindi 23.8 1.3E+02 0.0045 30.0 6.8 44 470-513 217-265 (347)
273 1vhc_A Putative KHG/KDPG aldol 23.8 3.4E+02 0.012 25.1 9.2 83 420-505 31-115 (224)
274 1t5b_A Acyl carrier protein ph 23.8 80 0.0027 28.1 4.8 41 85-127 2-44 (201)
275 3iqw_A Tail-anchored protein t 23.7 68 0.0023 31.9 4.6 41 82-127 13-53 (334)
276 4hs4_A Chromate reductase; tri 23.7 38 0.0013 31.0 2.5 39 82-124 4-43 (199)
277 2i6u_A Otcase, ornithine carba 23.6 3.3E+02 0.011 26.7 9.4 104 353-485 119-226 (307)
278 3sxp_A ADP-L-glycero-D-mannohe 23.6 61 0.0021 32.0 4.3 35 83-127 9-45 (362)
279 1sc6_A PGDH, D-3-phosphoglycer 23.6 1.9E+02 0.0063 29.6 8.0 44 470-513 191-239 (404)
280 3r6d_A NAD-dependent epimerase 23.5 66 0.0023 29.1 4.2 25 100-127 14-39 (221)
281 4e21_A 6-phosphogluconate dehy 23.4 59 0.002 32.8 4.0 35 82-127 20-54 (358)
282 1mb3_A Cell division response 23.4 2.6E+02 0.009 21.7 9.3 103 433-548 3-117 (124)
283 2fzv_A Putative arsenical resi 23.3 86 0.003 30.4 5.1 42 82-127 56-98 (279)
284 2pk3_A GDP-6-deoxy-D-LYXO-4-he 23.0 63 0.0021 31.1 4.1 25 100-127 21-45 (321)
285 3dfu_A Uncharacterized protein 23.0 36 0.0012 32.2 2.2 33 83-126 5-37 (232)
286 2vvp_A Ribose-5-phosphate isom 22.9 70 0.0024 28.4 3.9 36 83-126 2-37 (162)
287 3k5p_A D-3-phosphoglycerate de 22.9 2E+02 0.0069 29.5 8.0 46 469-514 201-251 (416)
288 2lpm_A Two-component response 22.8 3E+02 0.01 22.7 7.9 110 430-551 7-121 (123)
289 1xgk_A Nitrogen metabolite rep 22.5 65 0.0022 32.0 4.2 34 84-127 5-38 (352)
290 3qxc_A Dethiobiotin synthetase 22.5 1E+02 0.0034 29.1 5.3 40 83-126 19-58 (242)
291 2rdm_A Response regulator rece 22.4 2.8E+02 0.0097 21.7 10.5 106 431-549 5-120 (132)
292 1zmt_A Haloalcohol dehalogenas 22.4 36 0.0012 32.0 2.1 34 85-127 1-34 (254)
293 1fy2_A Aspartyl dipeptidase; s 22.3 2E+02 0.0068 26.7 7.3 103 405-510 4-123 (229)
294 3gd5_A Otcase, ornithine carba 22.3 3.7E+02 0.012 26.5 9.5 103 353-485 128-234 (323)
295 3ug7_A Arsenical pump-driving 22.2 1E+02 0.0034 30.7 5.5 27 102-128 38-64 (349)
296 4e38_A Keto-hydroxyglutarate-a 22.2 3.5E+02 0.012 25.3 8.9 55 431-485 59-115 (232)
297 3cfy_A Putative LUXO repressor 22.1 3.1E+02 0.011 22.0 8.2 104 433-549 6-119 (137)
298 3cwq_A Para family chromosome 22.1 82 0.0028 28.6 4.5 37 85-127 1-37 (209)
299 2qip_A Protein of unknown func 22.0 1.5E+02 0.005 26.0 6.0 67 413-482 90-158 (165)
300 2vns_A Metalloreductase steap3 22.0 65 0.0022 29.6 3.8 33 84-127 28-60 (215)
301 1fmt_A Methionyl-tRNA FMet for 21.9 99 0.0034 30.5 5.3 37 82-129 1-37 (314)
302 2q7x_A UPF0052 protein SP_1565 21.9 74 0.0025 31.7 4.3 37 82-129 2-38 (326)
303 1qp8_A Formate dehydrogenase; 21.9 1.5E+02 0.0053 28.8 6.7 44 470-513 168-216 (303)
304 3ba1_A HPPR, hydroxyphenylpyru 21.8 2.2E+02 0.0076 28.1 7.9 43 470-512 209-256 (333)
305 3l18_A Intracellular protease 21.8 1.1E+02 0.0037 26.6 5.1 38 84-128 2-39 (168)
306 2raf_A Putative dinucleotide-b 21.8 68 0.0023 29.3 3.8 34 83-127 18-51 (209)
307 3e48_A Putative nucleoside-dip 21.6 57 0.002 30.9 3.4 34 85-128 1-35 (289)
308 2q1s_A Putative nucleotide sug 21.5 67 0.0023 32.0 4.1 34 84-127 32-66 (377)
309 4hhu_A OR280; engineered prote 21.3 2E+02 0.0067 23.9 6.0 75 386-460 61-155 (170)
310 1e2b_A Enzyme IIB-cellobiose; 21.2 59 0.002 26.5 2.9 69 434-504 7-79 (106)
311 3lcm_A SMU.1420, putative oxid 21.1 77 0.0026 28.6 4.1 38 85-127 1-39 (196)
312 3fkq_A NTRC-like two-domain pr 21.0 80 0.0027 31.7 4.5 41 83-127 141-181 (373)
313 2ppv_A Uncharacterized protein 21.0 77 0.0026 31.6 4.2 37 82-129 2-38 (332)
314 3p2y_A Alanine dehydrogenase/p 20.8 2.7E+02 0.0092 28.2 8.4 50 468-517 257-314 (381)
315 3hv2_A Response regulator/HD d 20.8 3.5E+02 0.012 22.1 9.2 106 431-549 14-130 (153)
316 4had_A Probable oxidoreductase 20.7 2.1E+02 0.007 28.0 7.5 91 403-506 24-116 (350)
317 2qyt_A 2-dehydropantoate 2-red 20.7 61 0.0021 31.3 3.5 33 83-126 7-45 (317)
318 3h5i_A Response regulator/sens 20.7 3.3E+02 0.011 21.8 11.9 107 431-550 5-122 (140)
319 3noy_A 4-hydroxy-3-methylbut-2 20.6 1.5E+02 0.005 29.9 6.1 115 402-516 30-150 (366)
320 3l6e_A Oxidoreductase, short-c 20.5 82 0.0028 29.1 4.2 34 85-127 3-36 (235)
321 3ffs_A Inosine-5-monophosphate 20.5 2.9E+02 0.0099 28.2 8.6 102 431-532 156-282 (400)
322 2qr3_A Two-component system re 20.5 2.8E+02 0.0096 22.0 7.3 105 432-549 4-123 (140)
323 3r6w_A FMN-dependent NADH-azor 20.5 87 0.003 28.5 4.3 40 85-127 2-44 (212)
324 3r7f_A Aspartate carbamoyltran 20.5 71 0.0024 31.5 3.8 37 83-127 146-182 (304)
325 1kyq_A Met8P, siroheme biosynt 20.4 80 0.0027 30.6 4.1 35 83-128 12-46 (274)
326 1jay_A Coenzyme F420H2:NADP+ o 20.3 69 0.0023 28.9 3.6 33 85-127 1-33 (212)
327 2x6t_A ADP-L-glycero-D-manno-h 20.3 65 0.0022 31.7 3.7 35 83-127 45-80 (357)
328 1e4e_A Vancomycin/teicoplanin 20.3 39 0.0013 33.5 1.9 43 82-127 1-44 (343)
329 3hwr_A 2-dehydropantoate 2-red 20.2 71 0.0024 31.3 3.9 34 82-127 17-50 (318)
330 3oz2_A Digeranylgeranylglycero 20.2 57 0.002 32.1 3.2 28 87-125 7-34 (397)
331 3rc1_A Sugar 3-ketoreductase; 20.2 2.3E+02 0.008 27.8 7.8 91 402-506 27-119 (350)
332 3pef_A 6-phosphogluconate dehy 20.2 77 0.0026 30.3 4.1 33 84-127 1-33 (287)
333 1wbh_A KHG/KDPG aldolase; lyas 20.2 4.3E+02 0.015 24.1 9.1 95 403-504 17-113 (214)
334 3nhm_A Response regulator; pro 20.0 3.2E+02 0.011 21.5 9.7 103 432-548 5-118 (133)
335 3doj_A AT3G25530, dehydrogenas 20.0 85 0.0029 30.6 4.4 33 84-127 21-53 (310)
336 1gsa_A Glutathione synthetase; 20.0 89 0.003 29.8 4.5 40 85-127 2-41 (316)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=1.6e-73 Score=628.17 Aligned_cols=467 Identities=70% Similarity=1.174 Sum_probs=424.5
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCe
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (564)
..|||+||++|++|+.|+||++++++.|+++|+++||+|+|++|.|+++.+.++......+.+++..+.+++++...+|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 47999999999999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchH
Q 008488 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (564)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~ 242 (564)
+++++++|.++.+.|+.++..+|++..|.+|.|+.+||.+||++++++++.+++...+++.+.+++|+|+|+|||+++++
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999988999999999999
Q ss_pred HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 243 ~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
|.+++..++..+.+.++|+|+|+||..+||.|+...+..++++..+....++...+..+......++++.++..||.|+|
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 99999999888888899999999999999999999999999888887777777777777777789999999999999999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
||+.+++++...+.+|.+++...+..++.+|+||||.+.|+|.++++++.+|+..+..+.|..+|.++++++||+.+++.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 99999999988777787777777788999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
|+|+|+||+.++||++.|++|++++.+.+.+++|+|.|+...+..++.+...+++++.+.+.++.++++.+|++||++|+
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~ 407 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAV 407 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheeec
Confidence 99999999999999999999999998889999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
||++|+||++++|||+||+|||+|++||++|+|.|+.|||+++....++.+++|.|+++|+++|.+.
T Consensus 408 PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ra 474 (536)
T 3vue_A 408 PSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRA 474 (536)
T ss_dssp CCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998653
No 2
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.8e-45 Score=399.15 Aligned_cols=421 Identities=33% Similarity=0.578 Sum_probs=314.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcc-eEEEEE-eCCeeeeEEEEEeeecCe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-VVIELK-VGDKIEKVRFFHCHKRGV 162 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~gv 162 (564)
|||++|+.+++|+...||++.++.+|+++|+++||+|+|+++.++.....+... ...... .+. ...+.....+|+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gv 77 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAG---HITLLFGHYNGV 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTC---CEEEEEEEETTE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCC---cEEEEEEEECCc
Confidence 999999999888656899999999999999999999999999764322211110 000000 000 112222335799
Q ss_pred eEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchH
Q 008488 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (564)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~ 242 (564)
.+++++.+.++.+ . ..+|....+.+|.++..++..+...+.++++.+.. ..+|| |||+|+|..+++
T Consensus 78 ~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D-ivh~~~~~~~~~ 143 (485)
T 2qzs_A 78 GIYLIDAPHLYDR----P-GSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDP--------FWRPD-VVHAHDWHAGLA 143 (485)
T ss_dssp EEEEEECHHHHCC----S-SCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSST--------TCCCS-EEEEETGGGTTH
T ss_pred EEEEEeChhhccC----C-CCccCCcccCCCCchHHHHHHHHHHHHHHHHHhcc--------CCCCC-EEEeeccchhHH
Confidence 9999876543332 0 01454444455677878887788777777765431 13699 999999988888
Q ss_pred HHHHH-hhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceec
Q 008488 243 PCYLK-TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (564)
Q Consensus 243 ~~~l~-~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (564)
+.+++ +. .++|+|+|+|+..+++.++...+...+++..+... ... .......+++..++.+|.++
T Consensus 144 ~~~~~~~~-------~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ad~vi 209 (485)
T 2qzs_A 144 PAYLAARG-------RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNI----HGL---EFNGQISFLKAGLYYADHIT 209 (485)
T ss_dssp HHHHHHTT-------CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCST----TTT---EETTEEEHHHHHHHHCSEEE
T ss_pred HHHHhhcc-------CCCCEEEEecCccccCCCCHHHHHhcCCCchhccc----ccc---cccccccHHHHHHHhcCeEE
Confidence 77766 32 48999999998876554443333333333222110 000 00112356788899999999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhhh--c--cceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNIIR--K--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 397 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~--~--~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~ 397 (564)
++|+.+++.+.+. .+|+.++.+++ . .++.+||||+|.+.|.|..++.+..+|+..++ .++...+.++++++|++
T Consensus 210 ~~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 287 (485)
T 2qzs_A 210 AVSPTYAREITEP-QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLK 287 (485)
T ss_dssp ESSHHHHHHTTSH-HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCG-GGGHHHHHHHHHHHTCC
T ss_pred ecCHHHHHHHhcc-ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccch-hHHHHhHHHHHHHcCCC
Confidence 9999999988751 03332211111 1 48999999999999998877777788888775 57778889999999998
Q ss_pred CCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 398 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 398 ~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
.+.+.++|+|+||+.++||++.+++|++.+.+++++|+|+|+|++.+++.++++..++++++.++.+++.+++..+|+.|
T Consensus 288 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~a 367 (485)
T 2qzs_A 288 VDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGA 367 (485)
T ss_dssp CCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhC
Confidence 64466899999999999999999999999977799999999998667889999988887778767777888878899999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|++|+||.+|+||++++|||+||+|||+|+.||+.|++.++ .+|++ ++++|+++|+++|.+
T Consensus 368 dv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l----------~~~~d~~~la~~i~~ 437 (485)
T 2qzs_A 368 DVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFV----------FEDSNAWSLLRAIRR 437 (485)
T ss_dssp SEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEE----------ECSSSHHHHHHHHHH
T ss_pred CEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEE----------ECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 89999 789999999998865
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.3e-45 Score=397.12 Aligned_cols=423 Identities=35% Similarity=0.567 Sum_probs=315.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccC-cceEEEEEeCCeeeeEEEEEeeecCee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD-TDVVIELKVGDKIEKVRFFHCHKRGVD 163 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (564)
|||++|+.+++|....||++.++.+|+++|+++||+|+|+++.++.....+. .....+..+... ...+......+|++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLG-EKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSS-CCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecC-CeEEEEEEEecCce
Confidence 9999999998886458999999999999999999999999997643222111 001111111000 01223333458999
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhh-ccCCCCCCCCCCCCCEEEEEcCCCcchH
Q 008488 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (564)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l-~~~~~~~~~~~~~pDvIih~h~~~~~~~ 242 (564)
+++++.+.++.+ . ..+|+...+.++.++..++..+..++.++++.+ . .++|| |||+|+|.++++
T Consensus 80 v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~D-iIh~~~~~~~~~ 144 (485)
T 1rzu_A 80 LLILDAPAYYER----S-GGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP---------GWRPD-MVHAHDWQAAMT 144 (485)
T ss_dssp EEEEECHHHHCS----S-SCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS---------SCCCS-EEEEEHHHHTTH
T ss_pred EEEEeChHHhCC----C-ccccCCcccccccchHHHHHHHHHHHHHHHHHhcc---------CCCCC-EEEecccchhHH
Confidence 999876543332 0 125554445567788888888888888777665 2 23699 999999888887
Q ss_pred HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 243 ~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
+.+++... ..++|+|+++|+..+++.++...+...+++..+... +.. .......+++..++.+|.+++
T Consensus 145 ~~~~~~~~-----~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ad~vi~ 212 (485)
T 1rzu_A 145 PVYMRYAE-----TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGM----EGI---EYYNDVSFLKGGLQTATALST 212 (485)
T ss_dssp HHHHHHSS-----SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSST----TTT---EETTEEEHHHHHHHHCSEEEE
T ss_pred HHHHhhcc-----cCCCCEEEEecCccccCCCCHHHHhhcCCChhhccc----ccc---cccccccHHHHHHhhcCEEEe
Confidence 77776531 138899999998876655544333333333322110 000 001123577888999999999
Q ss_pred CCHHHHHHHHcCccCCCcchhhh--hccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 008488 323 VSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (564)
+|+.+++.+.+. .+|..++.++ ...++.+|+||+|.+.|.|..++.+..+|+..++ +++...+.++++++|++.+
T Consensus 213 ~S~~~~~~~~~~-~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~- 289 (485)
T 1rzu_A 213 VSPSYAEEILTA-EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDD- 289 (485)
T ss_dssp SCHHHHHHTTSH-HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCCS-
T ss_pred cCHhHHHHHhcc-ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccch-hhHHHhHHHHHHhcCCCCC-
Confidence 999999998751 0232111111 2348999999999999998877777777777764 5777888999999999854
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
..++|+|+||+.++||++.+++|++++.+++++|+|+|+|++.+++.++++..++++++.++.+++.+++..+|+.||++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~ 369 (485)
T 1rzu_A 290 GSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAI 369 (485)
T ss_dssp SSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEE
T ss_pred CCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEE
Confidence 24699999999999999999999999977899999999998768889999988887788877777888878899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+||.+|+||++++|||+||+|||+|+.||+.|++.++ .+|++ +++.|+++|+++|.+
T Consensus 370 v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l----------~~~~d~~~la~~i~~ 436 (485)
T 1rzu_A 370 IIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQ----------FSPVTLDGLKQAIRR 436 (485)
T ss_dssp EECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEE----------ESSCSHHHHHHHHHH
T ss_pred EECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceE----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 89999 689999999998764
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1.8e-43 Score=376.15 Aligned_cols=385 Identities=25% Similarity=0.336 Sum_probs=297.0
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCe
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (564)
++|||++|+.+++| ...||.+.++.+|+++|+++||+|+|+++.++...+.. ...+.+-......+......+|+
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~gv 75 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE----IGKIRVFGEEVQVKVSYEERGNL 75 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE----EEEEEETTEEEEEEEEEEEETTE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh----hccccccCcccceeeeeccCCCc
Confidence 47999999999888 56899999999999999999999999999876544321 22222223444555666678999
Q ss_pred eEEEEeCCcccccccCCCCCcccCCCCCCCCcch-hHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcch
Q 008488 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (564)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~-~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~ 241 (564)
++++++. .++.+ ..+|+. +.++ ..++..+...+.++++.+..+ .++|| |||+|+|..++
T Consensus 76 ~v~~~~~-~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D-ii~~~~~~~~~ 135 (439)
T 3fro_A 76 RIYRIGG-GLLDS------EDVYGP-----GWDGLIRKAVTFGRASVLLLNDLLRE-------EPLPD-VVHFHDWHTVF 135 (439)
T ss_dssp EEEEEES-GGGGC------SSTTCS-----HHHHHHHHHHHHHHHHHHHHHHHTTT-------SCCCS-EEEEESGGGHH
T ss_pred eEEEecc-hhccc------cccccC-----CcchhhhhhHHHHHHHHHHHHHHhcc-------CCCCe-EEEecchhhhh
Confidence 9999987 44433 334432 4556 778888888888888876110 23699 99999999888
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceec
Q 008488 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (564)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 321 (564)
++.++++. .++|+|+++|+..... ++...+.. ....+........+++..++.+|.++
T Consensus 136 ~~~~~~~~-------~~~~~v~~~h~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ad~ii 193 (439)
T 3fro_A 136 AGALIKKY-------FKIPAVFTIHRLNKSK-LPAFYFHE--------------AGLSELAPYPDIDPEHTGGYIADIVT 193 (439)
T ss_dssp HHHHHHHH-------HCCCEEEEESCCCCCC-EEHHHHHH--------------TTCGGGCCSSEECHHHHHHHHCSEEE
T ss_pred hHHHHhhc-------cCCCEEEEeccccccc-CchHHhCc--------------cccccccccceeeHhhhhhhhccEEE
Confidence 88887755 3899999999765422 11000000 00000001123367888899999999
Q ss_pred cCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCC
Q 008488 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (564)
Q Consensus 322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (564)
++|+.+++.... .++++ ..++.+||||+|.+.|.|...+ ..+...++++++++|++. +
T Consensus 194 ~~S~~~~~~~~~--~~~~~------~~~i~vi~ngvd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~ 251 (439)
T 3fro_A 194 TVSRGYLIDEWG--FFRNF------EGKITYVFNGIDCSFWNESYLT------------GSRDERKKSLLSKFGMDE--G 251 (439)
T ss_dssp ESCHHHHHHTHH--HHGGG------TTSEEECCCCCCTTTSCGGGSC------------SCHHHHHHHHHHHHTCCS--C
T ss_pred ecCHHHHHHHhh--hhhhc------CCceeecCCCCCchhcCccccc------------chhhhhHHHHHHHcCCCC--C
Confidence 999999988433 12232 3489999999999998875311 235567889999999963 3
Q ss_pred ccEEEEEeccc-cccCHHHHHHHHHhccc----CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh
Q 008488 402 IPVIGFIGRLE-EQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (564)
Q Consensus 402 ~~~i~~iGrl~-~~KG~d~ll~A~~~l~~----~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ 476 (564)
++|+|+||+. +.||++.+++|++.+.+ ++++|+|+|+|+..+++.++++..++++.+.+.+.++.+++..+|+.
T Consensus 252 -~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (439)
T 3fro_A 252 -VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS 330 (439)
T ss_dssp -EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT
T ss_pred -cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH
Confidence 8999999999 99999999999999977 69999999999977789999999998844444554789999999999
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
||++|+||.+|+||++++|||+||+|||+|+.||+.|++.++ +|++ ++++|+++++++|.+
T Consensus 331 adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~----------~~~~d~~~la~~i~~ 391 (439)
T 3fro_A 331 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGIL----------VKAGDPGELANAILK 391 (439)
T ss_dssp CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEE----------ECTTCHHHHHHHHHH
T ss_pred CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEE----------eCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 9998 789999999998863
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.8e-37 Score=331.15 Aligned_cols=361 Identities=18% Similarity=0.245 Sum_probs=251.1
Q ss_pred CccccccCCCceEEEEEeeccCcc-----ccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCee
Q 008488 75 PSLMIVCGVGLNILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKI 149 (564)
Q Consensus 75 ~~~~~~~~~~MkIl~vs~~~~P~~-----~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~ 149 (564)
.++...+++.|||++|+..++|.. ..||.+.++..|+++|+++||+|+++++........
T Consensus 11 ~~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------- 75 (438)
T 3c48_A 11 SSGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE--------------- 75 (438)
T ss_dssp --------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS---------------
T ss_pred ccCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc---------------
Confidence 344555567899999999888832 369999999999999999999999999874321110
Q ss_pred eeEEEEEeeecCeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHh-hhhhccCCCCCCCCCCCC
Q 008488 150 EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYGE 228 (564)
Q Consensus 150 ~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~-~~~l~~~~~~~~~~~~~p 228 (564)
.....+|+.++.+....+... . ..+....+..+...+++. ++... +|
T Consensus 76 -----~~~~~~~v~v~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 123 (438)
T 3c48_A 76 -----IVRVAENLRVINIAAGPYEGL----------S------KEELPTQLAAFTGGMLSFTRREKV-----------TY 123 (438)
T ss_dssp -----EEEEETTEEEEEECCSCSSSC----------C------GGGGGGGHHHHHHHHHHHHHHHTC-----------CC
T ss_pred -----cccccCCeEEEEecCCCcccc----------c------hhHHHHHHHHHHHHHHHHHHhccC-----------CC
Confidence 011236788877754321110 0 001111122233333333 33221 39
Q ss_pred CEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhH
Q 008488 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN 308 (564)
Q Consensus 229 DvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 308 (564)
| |||+|.|..++++..+++.. ++|+|+++|+....... .+..... +.......
T Consensus 124 D-iv~~~~~~~~~~~~~~~~~~-------~~p~v~~~h~~~~~~~~------~~~~~~~-------------~~~~~~~~ 176 (438)
T 3c48_A 124 D-LIHSHYWLSGQVGWLLRDLW-------RIPLIHTAHTLAAVKNS------YRDDSDT-------------PESEARRI 176 (438)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHH-------TCCEEEECSSCHHHHSC------C----CC-------------HHHHHHHH
T ss_pred C-EEEeCCccHHHHHHHHHHHc-------CCCEEEEecCCcccccc------cccccCC-------------cchHHHHH
Confidence 9 89999877666666565543 78999999965321100 0000000 00001223
Q ss_pred HHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHH
Q 008488 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (564)
Q Consensus 309 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
+.+..++.+|.++++|+..++.+.+ .+|++.+ ++.+|+||+|...|.+... ..+.
T Consensus 177 ~~~~~~~~~d~ii~~s~~~~~~~~~--~~g~~~~------k~~vi~ngvd~~~~~~~~~-----------------~~~~ 231 (438)
T 3c48_A 177 CEQQLVDNADVLAVNTQEEMQDLMH--HYDADPD------RISVVSPGADVELYSPGND-----------------RATE 231 (438)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHH--HHCCCGG------GEEECCCCCCTTTSCCC---------------------CH
T ss_pred HHHHHHhcCCEEEEcCHHHHHHHHH--HhCCChh------heEEecCCccccccCCccc-----------------chhh
Confidence 4566788999999999999999876 3566544 8999999999988876532 1134
Q ss_pred HHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C--CeEEEEEeC----CChhhHHHHHHHHHhCC--Cc
Q 008488 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGT----GKKPMEKQLEQLEILYP--EK 458 (564)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~--~v~lvIvG~----g~~~~~~~l~~L~~~~~--~~ 458 (564)
.+++++|++. +.++|+|+||+.+.||++.+++|++.+.+ + +++|+|+|. |+ ..+.++++..+++ ++
T Consensus 232 ~~r~~~~~~~--~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~--~~~~l~~~~~~~~l~~~ 307 (438)
T 3c48_A 232 RSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNA--TPDTYRHMAEELGVEKR 307 (438)
T ss_dssp HHHHHTTCCS--SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC--------CHHHHHHHHTTCTTT
T ss_pred hhHHhcCCCC--CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCc--HHHHHHHHHHHcCCCCc
Confidence 5788999864 34899999999999999999999999975 3 799999998 54 4556666666544 57
Q ss_pred eEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCC
Q 008488 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 459 v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d 538 (564)
+.+.+..+.+++..+|+.||++|+||..|+||++++|||+||+|||+++.||+.|++.++.+|++ +++.|
T Consensus 308 v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~----------~~~~d 377 (438)
T 3c48_A 308 IRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----------VDGHS 377 (438)
T ss_dssp EEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEE----------ESSCC
T ss_pred EEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEE----------CCCCC
Confidence 99998888888999999999999999999999999999999999999999999999999999998 68899
Q ss_pred HHHHHhhccc
Q 008488 539 NSRVIPRIPL 548 (564)
Q Consensus 539 ~~aLa~aI~~ 548 (564)
+++++++|.+
T Consensus 378 ~~~la~~i~~ 387 (438)
T 3c48_A 378 PHAWADALAT 387 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.6e-36 Score=330.45 Aligned_cols=369 Identities=15% Similarity=0.081 Sum_probs=257.4
Q ss_pred CceEEEEEeeccCcc---------ccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccc-cccCcceEEEEEeCCeeeeEE
Q 008488 84 GLNILFVGTEVAPWS---------KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVR 153 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~---------~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 153 (564)
+|||++|+..++|.. ..||.+.++.+|+++|+++||+|+|+++...... ..+.. .
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~-------------~-- 71 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSG-------------E-- 71 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCC-------------S--
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhh-------------h--
Confidence 599999999887732 4799999999999999999999999998643211 10000 0
Q ss_pred EEEee--ecCeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEE
Q 008488 154 FFHCH--KRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVV 231 (564)
Q Consensus 154 ~~~~~--~~gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvI 231 (564)
.... .+|+.++.++...... .. .......+..+...+.+++++.. .+|| |
T Consensus 72 -~~~~~~~~gv~v~~~~~~~~~~----------~~------~~~~~~~~~~~~~~l~~~l~~~~----------~~~D-i 123 (499)
T 2r60_A 72 -IDYYQETNKVRIVRIPFGGDKF----------LP------KEELWPYLHEYVNKIINFYREEG----------KFPQ-V 123 (499)
T ss_dssp -EEECTTCSSEEEEEECCSCSSC----------CC------GGGCGGGHHHHHHHHHHHHHHHT----------CCCS-E
T ss_pred -HHhccCCCCeEEEEecCCCcCC----------cC------HHHHHHHHHHHHHHHHHHHHhcC----------CCCC-E
Confidence 0011 2577777775321100 00 00000111223344445555431 1599 8
Q ss_pred EEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCC-cccccccccccCCCCCccCchhHHH
Q 008488 232 FVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWM 310 (564)
Q Consensus 232 ih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (564)
||+|.+..++++..+++.. ++|+|+++|+........ +...+.. ..+...+ . ......+.
T Consensus 124 vh~~~~~~~~~~~~~~~~~-------~~p~v~~~H~~~~~~~~~---~~~~~~~~~~~~~~~------~---~~~~~~~~ 184 (499)
T 2r60_A 124 VTTHYGDGGLAGVLLKNIK-------GLPFTFTGHSLGAQKMEK---LNVNTSNFKEMDERF------K---FHRRIIAE 184 (499)
T ss_dssp EEEEHHHHHHHHHHHHHHH-------CCCEEEECSSCHHHHHHT---TCCCSTTSHHHHHHH------C---HHHHHHHH
T ss_pred EEEcCCcchHHHHHHHHhc-------CCcEEEEccCcccccchh---hccCCCCcchhhhhH------H---HHHHHHHH
Confidence 9999876666666666543 789999999754311000 0000000 0000000 0 00112345
Q ss_pred HHHHHhcceeccCCHHHHHHHHcCccCC-C----cchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHH
Q 008488 311 KAGILESDMVLTVSPHYAQELVSGEDKG-V----ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (564)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g-~----~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (564)
+..++.+|.++++|+..++.+.+...+| + +.+ ++.+||||+|.+.|.|... +.
T Consensus 185 ~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~------ki~vi~ngvd~~~~~~~~~----------------~~ 242 (499)
T 2r60_A 185 RLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDD------KFSVIPPGVNTRVFDGEYG----------------DK 242 (499)
T ss_dssp HHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGG------GEEECCCCBCTTTSSSCCC----------------HH
T ss_pred HHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCC------CeEEECCCcChhhcCccch----------------hh
Confidence 6778899999999999999987620045 4 333 8999999999988876531 23
Q ss_pred HHHHHHHHhC-----CCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C-CeEEEEEeC--CC----h-------hh
Q 008488 386 LKEALQAEVG-----LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-NVQIIVLGT--GK----K-------PM 444 (564)
Q Consensus 386 ~~~~l~~~~g-----l~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~-~v~lvIvG~--g~----~-------~~ 444 (564)
.+.++++++| ++. +.++|+|+||+.++||++.+++|++.+.+ + .++++|+|+ |+ . ++
T Consensus 243 ~~~~~r~~~~~~~~~~~~--~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y 320 (499)
T 2r60_A 243 IKAKITKYLERDLGSERM--ELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEI 320 (499)
T ss_dssp HHHHHHHHHHHHSCGGGT--TSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHH
T ss_pred hHHHHHHHhcccccccCC--CCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHH
Confidence 4567888888 654 44799999999999999999999999965 2 468999998 32 1 12
Q ss_pred HHHHHHHHHhCC--CceEEEeccChHHHHHHHHhc----CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC
Q 008488 445 EKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG 518 (564)
Q Consensus 445 ~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~A----Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g 518 (564)
.+.++++..+++ +++.+.+..+.+++..+|+.| |++|+||.+|+||++++|||+||+|||+|+.||+.|++.++
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~ 400 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGG 400 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGG
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCC
Confidence 677877777664 579999988889999999999 99999999999999999999999999999999999999999
Q ss_pred cceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 519 FTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 519 ~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
.+|++ +++.|+++++++|.+
T Consensus 401 ~~g~l----------~~~~d~~~la~~i~~ 420 (499)
T 2r60_A 401 KYGVL----------VDPEDPEDIARGLLK 420 (499)
T ss_dssp TSSEE----------ECTTCHHHHHHHHHH
T ss_pred ceEEE----------eCCCCHHHHHHHHHH
Confidence 99998 789999999998754
No 7
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=8.2e-36 Score=312.77 Aligned_cols=327 Identities=21% Similarity=0.271 Sum_probs=248.5
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccc-cccCcceEEEEEeCCeeeeEEEEEeeec
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
+++|||++|+..++|. .||.+.++.+|+++| +||+|+++++..+... ..++ ...
T Consensus 2 ~~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~---------------------~~~ 56 (394)
T 3okp_A 2 SASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD---------------------KTL 56 (394)
T ss_dssp --CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH---------------------TTC
T ss_pred CCCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc---------------------ccc
Confidence 3579999999987775 899999999999999 6999999998754321 1000 123
Q ss_pred CeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
++.++.+....++.. ..+...+.++++.. +|| |||+|.+...
T Consensus 57 ~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~------------~~D-vv~~~~~~~~ 98 (394)
T 3okp_A 57 DYEVIRWPRSVMLPT-------------------------PTTAHAMAEIIRER------------EID-NVWFGAAAPL 98 (394)
T ss_dssp SSEEEEESSSSCCSC-------------------------HHHHHHHHHHHHHT------------TCS-EEEESSCTTG
T ss_pred ceEEEEccccccccc-------------------------hhhHHHHHHHHHhc------------CCC-EEEECCcchH
Confidence 566666543221110 12233444444443 599 8899876544
Q ss_pred -hHHHHHHhhccCCCCCCCC-eEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcc
Q 008488 241 -LIPCYLKTMYKPKGMYKSA-KVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (564)
Q Consensus 241 -~~~~~l~~~~~~~~~~~~~-kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad 318 (564)
++...++.. +. ++|+++|+...... .......+++..++.+|
T Consensus 99 ~~~~~~~~~~--------~~~~~i~~~h~~~~~~~----------------------------~~~~~~~~~~~~~~~~d 142 (394)
T 3okp_A 99 ALMAGTAKQA--------GASKVIASTHGHEVGWS----------------------------MLPGSRQSLRKIGTEVD 142 (394)
T ss_dssp GGGHHHHHHT--------TCSEEEEECCSTHHHHT----------------------------TSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhc--------CCCcEEEEeccchhhhh----------------------------hcchhhHHHHHHHHhCC
Confidence 344344332 55 58999995432000 00123455677889999
Q ss_pred eeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 008488 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (564)
Q Consensus 319 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (564)
.++++|+..++.+.+. ++. ..++.+|+||+|.+.|.|.. +..+..+++++|++.
T Consensus 143 ~ii~~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 196 (394)
T 3okp_A 143 VLTYISQYTLRRFKSA--FGS-------HPTFEHLPSGVDVKRFTPAT-----------------PEDKSATRKKLGFTD 196 (394)
T ss_dssp EEEESCHHHHHHHHHH--HCS-------SSEEEECCCCBCTTTSCCCC-----------------HHHHHHHHHHTTCCT
T ss_pred EEEEcCHHHHHHHHHh--cCC-------CCCeEEecCCcCHHHcCCCC-----------------chhhHHHHHhcCCCc
Confidence 9999999999998862 222 23899999999999887743 234678899999974
Q ss_pred CCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh
Q 008488 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (564)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ 476 (564)
+ .++|+|+||+.+.||++.+++|++++.+ ++++|+|+|+|+ ..+.++++.....+++.+.+..+.+++..+|+.
T Consensus 197 ~--~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (394)
T 3okp_A 197 T--TPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAA 272 (394)
T ss_dssp T--CCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCT--THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH
T ss_pred C--ceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCch--HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh
Confidence 3 4899999999999999999999999876 699999999987 566777776555568999999999999999999
Q ss_pred cCEEEEcCCC-------CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 477 ADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 477 ADv~v~PS~~-------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
||++|+||.+ |++|++++|||+||+|||+++.||+.|++.++ +|++ ++++|+++++++|.+
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~----------~~~~d~~~l~~~i~~ 340 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLV----------VEGSDVDKLSELLIE 340 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEE----------CCTTCHHHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceE----------eCCCCHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999 9998 789999999998754
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=8.3e-36 Score=339.38 Aligned_cols=389 Identities=14% Similarity=0.160 Sum_probs=253.4
Q ss_pred CCceEEEEEeecc---------CccccchHHHHhhh--------hHHHHHhCCCeEE----EEeeCCCccccccCcceEE
Q 008488 83 VGLNILFVGTEVA---------PWSKTGGLGDVLGG--------LPPALAANGHRVM----TIAPRYDQYKDAWDTDVVI 141 (564)
Q Consensus 83 ~~MkIl~vs~~~~---------P~~~~GG~~~~~~~--------La~aLa~~Gh~V~----vitp~~~~~~~~~~~~~~~ 141 (564)
+.|+|++||...+ |. +||...++.+ |+++|+++||+|+ |+|...+.. ...+.....
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~d--tGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~-~g~~y~~~~ 353 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPD--TGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDA-VGTTCGERL 353 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTC-TTSSTTSSE
T ss_pred ceeEEEEEcCCcccCccccCCCCC--CCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCC-CCCccCCcc
Confidence 3689999999876 75 9999999985 6667778999886 898875432 111111110
Q ss_pred EEEeCCeeeeEEEEEeeecCeeEEEEeCCc---ccccccCCCCCcccCCCCCCCCcchhHHHHHHH-HHHHHhhhhhccC
Q 008488 142 ELKVGDKIEKVRFFHCHKRGVDRVFVDHPW---FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC-QAALEAPRILNLN 217 (564)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~---~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~-~~~l~~~~~l~~~ 217 (564)
+. ....+|+.+++++... ++.+ |.. ...++. . +..|. ..+..+++...
T Consensus 354 e~------------i~~~~gv~I~RvP~~~~~g~l~~-~l~-k~~L~~---------~---L~~F~~~~l~~il~~~~-- 405 (816)
T 3s28_A 354 ER------------VYDSEYCDILRVPFRTEKGIVRK-WIS-RFEVWP---------Y---LETYTEDAAVELSKELN-- 405 (816)
T ss_dssp EE------------CTTCSSEEEEEECEEETTEEECS-CCC-TTTCGG---------G---HHHHHHHHHHHHHHHCS--
T ss_pred ee------------ecCcCCeEEEEecCCCccccccc-ccc-HHHHHH---------H---HHHHHHHHHHHHHHhcC--
Confidence 00 0012477777774221 0010 100 011221 1 12233 33333444333
Q ss_pred CCCCCCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCc-cccccccccc
Q 008488 218 SNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPA-QFKSSFDFID 296 (564)
Q Consensus 218 ~~~~~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 296 (564)
.+|| |||+|.|.+++++..+++.+ ++|+|+|.|+........ .+... .....+.
T Consensus 406 --------~~PD-VIHsH~~~sglva~llar~~-------gvP~V~T~Hsl~~~k~~~------~~~~~~~~~~~y~--- 460 (816)
T 3s28_A 406 --------GKPD-LIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALEKTKYPD------SDIYWKKLDDKYH--- 460 (816)
T ss_dssp --------SCCS-EEEEEHHHHHHHHHHHHHHH-------TCCEEEECSCCHHHHSTT------TTTTHHHHHHHHC---
T ss_pred --------CCCe-EEEeCCchHHHHHHHHHHHc-------CCCEEEEEeccccccccc------ccchhhhHHHHHH---
Confidence 2599 99999999988888888764 899999999764321110 00000 0000000
Q ss_pred CCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCc-cCCCc----ch---------hhhhccceEEecCCcccCCC
Q 008488 297 GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE----LD---------NIIRKTGIKGIVNGMDVQEW 362 (564)
Q Consensus 297 ~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~-~~g~~----~~---------~~~~~~~i~~I~NGid~~~~ 362 (564)
.......++..+..+|.|+++|+..++.+.... .++.. +. ... ..++.+||||+|.+.|
T Consensus 461 ------~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~-~~ki~VIpnGVD~~~F 533 (816)
T 3s28_A 461 ------FSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVF-DPKFNIVSPGADMSIY 533 (816)
T ss_dssp ------HHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTT-CTTEEECCCCCCTTTS
T ss_pred ------HHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccC-CCCEEEECCCcCHHHc
Confidence 000112245578999999999999998643210 11110 00 000 1289999999999999
Q ss_pred CCCCccc--cccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEe
Q 008488 363 NPLTDKY--IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLG 438 (564)
Q Consensus 363 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG 438 (564)
.|...+. +...++. .+....++.+.++.+|+..+.+.++|+|+||+.+.||++.+++|++++.+ ++++|+|+|
T Consensus 534 ~P~~~~~~Rl~~~~~~---i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG 610 (816)
T 3s28_A 534 FPYTEEKRRLTKFHSE---IEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVG 610 (816)
T ss_dssp CCTTCTTTCCGGGHHH---HHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEEC
T ss_pred Cccchhhhhhhhcccc---ccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 8875321 0000000 00000111233566677445567999999999999999999999999976 689999999
Q ss_pred CCCh---------hhHHHHHHHHHhCC--CceEEEecc----ChHHHHHHHH-hcCEEEEcCCCCCCcHHHHHHHHcCCc
Q 008488 439 TGKK---------PMEKQLEQLEILYP--EKARGVAKF----NIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTV 502 (564)
Q Consensus 439 ~g~~---------~~~~~l~~L~~~~~--~~v~~~~~~----~~~~~~~il~-~ADv~v~PS~~E~~gl~~lEAma~G~P 502 (564)
+|++ ...+.++++..+++ ++|.+.+.. +.+++..+++ +||++|+||.+|+||++++|||+||+|
T Consensus 611 ~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~P 690 (816)
T 3s28_A 611 GDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP 690 (816)
T ss_dssp CCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCC
T ss_pred CCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCC
Confidence 9872 25567777777765 578888743 3466667777 689999999999999999999999999
Q ss_pred EEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 503 PIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 503 vI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
||+|+.||+.|++.++.+|++ +++.|+++++++|.
T Consensus 691 VIasd~GG~~EiV~dg~~Gll----------v~p~D~e~LA~aI~ 725 (816)
T 3s28_A 691 TFATCKGGPAEIIVHGKSGFH----------IDPYHGDQAADTLA 725 (816)
T ss_dssp EEEESSBTHHHHCCBTTTBEE----------ECTTSHHHHHHHHH
T ss_pred EEEeCCCChHHHHccCCcEEE----------eCCCCHHHHHHHHH
Confidence 999999999999999999999 79999999999984
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.5e-35 Score=308.78 Aligned_cols=325 Identities=16% Similarity=0.154 Sum_probs=226.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||++++..+.| .||.+.++.+|+++|+++||+|+++++...... ..|+++
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------------------------~~~~~v 51 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--------------------------PKAFEL 51 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--------------------------CTTCEE
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--------------------------CCCcEE
Confidence 999999998766 499999999999999999999999997622100 135666
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.++.+.+. +..+...+...+.+.++.. +|| |||+|.+..++...
T Consensus 52 ~~~~~~~~~----------------------~~~~~~~~~~~l~~~i~~~------------~~D-vv~~~~~~~~~~~~ 96 (374)
T 2iw1_A 52 IQVPVKSHT----------------------NHGRNAEYYAWVQNHLKEH------------PAD-RVVGFNKMPGLDVY 96 (374)
T ss_dssp EECCCCCSS----------------------HHHHHHHHHHHHHHHHHHS------------CCS-EEEESSCCTTCSEE
T ss_pred EEEccCccc----------------------chhhHHHHHHHHHHHHhcc------------CCC-EEEEecCCCCceee
Confidence 655432111 1122233334444444443 599 89998754332110
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHH--hcceecc
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL--ESDMVLT 322 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~--~ad~vi~ 322 (564)
+.... ...+.+.+.|+... .... .......+.+..+. .+|.+++
T Consensus 97 ~~~~~-------~~~~~~~~~~~~~~----------------~~~~-----------~~~~~~~~~~~~~~~~~~d~ii~ 142 (374)
T 2iw1_A 97 FAADV-------CYAEKVAQEKGFLY----------------RLTS-----------RYRHYAAFERATFEQGKSTKLMM 142 (374)
T ss_dssp ECCSC-------CHHHHHHHHCCHHH----------------HTSH-----------HHHHHHHHHHHHHSTTCCCEEEE
T ss_pred ecccc-------ccceeeeecccchh----------------hhcH-----------HHHHHHHHHHHHhhccCCcEEEE
Confidence 00000 11122222231100 0000 00001122333333 6999999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|+..++.+.+ .+|++.+ ++.+||||+|.+.|.|... +..+.++++++|++.+ .
T Consensus 143 ~s~~~~~~~~~--~~~~~~~------~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~ 196 (374)
T 2iw1_A 143 LTDKQIADFQK--HYQTEPE------RFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKEQ--Q 196 (374)
T ss_dssp SCHHHHHHHHH--HHCCCGG------GEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCTT--C
T ss_pred cCHHHHHHHHH--HhCCChh------heEEecCCcCHHhcCcccc----------------hhHHHHHHHHhCCCCC--C
Confidence 99999999886 3565543 8999999999988766431 2336678999999753 4
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc---CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhc
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~A 477 (564)
++++|+||+.+.||++.+++|++.+.+ ++++|+|+|.|+. +.++++..+++ +++.+.+. .+++..+|+.|
T Consensus 197 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~a 271 (374)
T 2iw1_A 197 NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP---RKFEALAEKLGVRSNVHFFSG--RNDVSELMAAA 271 (374)
T ss_dssp EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC---HHHHHHHHHHTCGGGEEEESC--CSCHHHHHHHC
T ss_pred eEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH---HHHHHHHHHcCCCCcEEECCC--cccHHHHHHhc
Confidence 899999999999999999999999965 4899999999873 34444444432 56887775 34566799999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCC-CCCHHHHHhhccc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSS-PSYNSRVIPRIPL 548 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~-~~d~~aLa~aI~~ 548 (564)
|++|+||.+|+||++++|||+||+|||+++.||+.|++.++.+|++ ++ +.|+++++++|.+
T Consensus 272 d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~----------~~~~~~~~~l~~~i~~ 333 (374)
T 2iw1_A 272 DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTV----------IAEPFSQEQLNEVLRK 333 (374)
T ss_dssp SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEE----------ECSSCCHHHHHHHHHH
T ss_pred CEEEeccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEE----------eCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 55 8899999988754
No 10
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=8.4e-34 Score=299.03 Aligned_cols=330 Identities=20% Similarity=0.200 Sum_probs=231.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCee
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (564)
-|+.-+....+ |. .||.+.++..|+++|+++||+|+++++..+.... ...+++.
T Consensus 13 ~~~~~~~~~~~-p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----------------------~~~~~i~ 66 (394)
T 2jjm_A 13 HMKLKIGITCY-PS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN-----------------------KVYPNIY 66 (394)
T ss_dssp --CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC---------------------------CCCTTEE
T ss_pred hheeeeehhcC-CC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc-----------------------ccCCceE
Confidence 46666666664 53 7999999999999999999999999986321100 0113444
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHH
Q 008488 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (564)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~ 243 (564)
+..++.+.+.. +. +.. . ...+...+.++++.. +|| |||+|.+......
T Consensus 67 ~~~~~~~~~~~----------~~------~~~--~-~~~~~~~l~~~l~~~------------~~D-vv~~~~~~~~~~~ 114 (394)
T 2jjm_A 67 FHEVTVNQYSV----------FQ------YPP--Y-DLALASKMAEVAQRE------------NLD-ILHVHYAIPHAIC 114 (394)
T ss_dssp EECCCCC--------------CC------SCC--H-HHHHHHHHHHHHHHH------------TCS-EEEECSSTTHHHH
T ss_pred EEecccccccc----------cc------ccc--c-cHHHHHHHHHHHHHc------------CCC-EEEEcchhHHHHH
Confidence 43332221100 00 000 0 112233344444443 599 8999976544333
Q ss_pred HHH-HhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceecc
Q 008488 244 CYL-KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (564)
Q Consensus 244 ~~l-~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 322 (564)
.++ +.... .++|+|+++|+.... ..+. ......+++..++.+|.+++
T Consensus 115 ~~~~~~~~~-----~~~p~v~~~h~~~~~---------~~~~------------------~~~~~~~~~~~~~~ad~ii~ 162 (394)
T 2jjm_A 115 AYLAKQMIG-----ERIKIVTTLHGTDIT---------VLGS------------------DPSLNNLIRFGIEQSDVVTA 162 (394)
T ss_dssp HHHHHHHTT-----TCSEEEEECCHHHHH---------TTTT------------------CTTTHHHHHHHHHHSSEEEE
T ss_pred HHHHHHhhc-----CCCCEEEEEecCccc---------ccCC------------------CHHHHHHHHHHHhhCCEEEE
Confidence 333 33321 268999999963210 0000 01123466778899999999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|+..++.+.+. ++. ..++.+||||+|...|.+.. +..+++++|++. +.
T Consensus 163 ~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~--~~ 211 (394)
T 2jjm_A 163 VSHSLINETHEL--VKP-------NKDIQTVYNFIDERVYFKRD--------------------MTQLKKEYGISE--SE 211 (394)
T ss_dssp SCHHHHHHHHHH--TCC-------SSCEEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC-----
T ss_pred CCHHHHHHHHHh--hCC-------cccEEEecCCccHHhcCCcc--------------------hHHHHHHcCCCC--CC
Confidence 999999998862 222 23899999999998887653 346778888864 34
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeccChHHHHHHHHhcCE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~--~~v~~~~~~~~~~~~~il~~ADv 479 (564)
++|+|+||+.+.||++.+++|++.+.+ .+++|+|+|+|+ ..+.++++..+++ +++.+.+. .+++..+|+.||+
T Consensus 212 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv 287 (394)
T 2jjm_A 212 KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGP--EFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDL 287 (394)
T ss_dssp CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCT--THHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSE
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCch--HHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCE
Confidence 799999999999999999999999876 579999999987 4566777766654 46777663 3456679999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|+||.+|+||++++|||+||+|||+++.||+.|++.++.+|++ +++.|+++++++|.+
T Consensus 288 ~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~----------~~~~d~~~la~~i~~ 346 (394)
T 2jjm_A 288 MLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL----------CEVGDTTGVADQAIQ 346 (394)
T ss_dssp EEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEE----------ECTTCHHHHHHHHHH
T ss_pred EEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEE----------eCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 688999999998754
No 11
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.2e-34 Score=296.41 Aligned_cols=283 Identities=15% Similarity=0.109 Sum_probs=219.0
Q ss_pred CCCceEEEEEee--------c---cCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeee
Q 008488 82 GVGLNILFVGTE--------V---APWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIE 150 (564)
Q Consensus 82 ~~~MkIl~vs~~--------~---~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~ 150 (564)
|++|||++++.. + +| ...||.+.++.+|+++|+++||+|+++++..+....
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p-~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~----------------- 62 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPP-QGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR----------------- 62 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSC-SSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----------------
T ss_pred CCccEEEEEeccccccCcccccccCc-ccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----------------
Confidence 457999999998 4 33 346999999999999999999999999987432111
Q ss_pred eEEEEEeeecCeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCE
Q 008488 151 KVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDV 230 (564)
Q Consensus 151 ~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDv 230 (564)
+++.++. .+ .. ..+.++++.. +||
T Consensus 63 ---------~~~~~~~--~~-------------------------~~-------~~l~~~l~~~------------~~D- 86 (342)
T 2iuy_A 63 ---------PGLTVVP--AG-------------------------EP-------EEIERWLRTA------------DVD- 86 (342)
T ss_dssp ---------TTEEECS--CC-------------------------SH-------HHHHHHHHHC------------CCS-
T ss_pred ---------Ccceecc--CC-------------------------cH-------HHHHHHHHhc------------CCC-
Confidence 1222210 00 00 0222333332 599
Q ss_pred EEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHH
Q 008488 231 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWM 310 (564)
Q Consensus 231 Iih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (564)
|||+|.+...+.. .+ ..++| |+++|+.....
T Consensus 87 vi~~~~~~~~~~~---~~-------~~~~p-v~~~h~~~~~~-------------------------------------- 117 (342)
T 2iuy_A 87 VVHDHSGGVIGPA---GL-------PPGTA-FISSHHFTTRP-------------------------------------- 117 (342)
T ss_dssp EEEECSSSSSCST---TC-------CTTCE-EEEEECSSSBC--------------------------------------
T ss_pred EEEECCchhhHHH---Hh-------hcCCC-EEEecCCCCCc--------------------------------------
Confidence 8999987655432 11 14889 99999543210
Q ss_pred HHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHH
Q 008488 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (564)
Q Consensus 311 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (564)
..+|.++++|+..++.+.+ ..++.+|+||+|.+.|.+...
T Consensus 118 ----~~~d~ii~~S~~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~----------------------- 157 (342)
T 2iuy_A 118 ----VNPVGCTYSSRAQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD----------------------- 157 (342)
T ss_dssp ----SCCTTEEESCHHHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT-----------------------
T ss_pred ----ccceEEEEcCHHHHHHHhc-------------CCceEEEcCCCChhhcCcccc-----------------------
Confidence 0199999999999998874 127899999999988876542
Q ss_pred HHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHH
Q 008488 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (564)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~ 470 (564)
.. .+.++|+|+||+.+.||++.+++|++.+ +++|+|+|.|+ .++.++++..++++++.+.+..+.+++
T Consensus 158 ----~~---~~~~~i~~vG~~~~~Kg~~~li~a~~~~---~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~l 225 (342)
T 2iuy_A 158 ----QV---AKEDFLLFMGRVSPHKGALEAAAFAHAC---GRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGGERR 225 (342)
T ss_dssp ----CC---CCCSCEEEESCCCGGGTHHHHHHHHHHH---TCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCHHHH
T ss_pred ----cC---CCCCEEEEEeccccccCHHHHHHHHHhc---CcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCHHHH
Confidence 01 1346899999999999999999999998 89999999987 456666666666578999998899988
Q ss_pred HHHHHhcCEEEEcCC----------CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeeccccccccCCCCC
Q 008488 471 HMIIAGADFILIPSR----------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 471 ~~il~~ADv~v~PS~----------~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~~~~~~~v~~~d 538 (564)
..+|+.||++|+||. .|+||++++|||+||+|||+++.||+.|++.+ +.+|++ +++ |
T Consensus 226 ~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~----------~~~-d 294 (342)
T 2iuy_A 226 LDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYG----------TDF-A 294 (342)
T ss_dssp HHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSS----------SCC-C
T ss_pred HHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEE----------cCC-C
Confidence 999999999999999 79999999999999999999999999999999 999998 788 9
Q ss_pred HHHHHhhcccCC
Q 008488 539 NSRVIPRIPLDS 550 (564)
Q Consensus 539 ~~aLa~aI~~~~ 550 (564)
+++++++|.+-.
T Consensus 295 ~~~l~~~i~~l~ 306 (342)
T 2iuy_A 295 PDEARRTLAGLP 306 (342)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.9e-33 Score=296.05 Aligned_cols=326 Identities=14% Similarity=0.100 Sum_probs=224.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (564)
+++|||++++.. + ..||.+.++.+|+++|+++||+|.+++...+.... .. ..... ....+
T Consensus 38 ~~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~--~~-----------~~~~~---~~~~~ 97 (416)
T 2x6q_A 38 LKGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFF--NV-----------TKTFH---NALQG 97 (416)
T ss_dssp TTTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHH--HH-----------HHHHH---HHHTT
T ss_pred hhccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchh--hh-----------hcccc---eeecc
Confidence 467999999985 3 36999999999999999999999999875321000 00 00000 00000
Q ss_pred eeEEEEeCCcccccccCCCCCcccCCCCCCCCcch-hHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~-~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
.. .+. +... ...+..+...+.+.++. .+|| |||+|++...
T Consensus 98 ~~--------------------~~~------~~~~~~~~~~~~~~~~~~~l~~------------~~~D-vv~~~~~~~~ 138 (416)
T 2x6q_A 98 NE--------------------SLK------LTEEMKELYLNVNRENSKFIDL------------SSFD-YVLVHDPQPA 138 (416)
T ss_dssp CC--------------------SCC------CCHHHHHHHHHHHHHHHHSSCG------------GGSS-EEEEESSTTG
T ss_pred cc--------------------ccc------ccHHHHHHHHHHHHHHHHHHhh------------cCCC-EEEEeccchh
Confidence 00 000 1111 11111122223333332 2599 8999987655
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
.+..+++ ...|+|+++|+..... ......+++..+..+|.+
T Consensus 139 ~~~~~~~---------~~~p~v~~~h~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 179 (416)
T 2x6q_A 139 ALIEFYE---------KKSPWLWRCHIDLSSP------------------------------NREFWEFLRRFVEKYDRY 179 (416)
T ss_dssp GGGGGSC---------CCSCEEEECCSCCSSC------------------------------CHHHHHHHHHHHTTSSEE
T ss_pred hHHHHHH---------hcCCEEEEEccccCCc------------------------------cHHHHHHHHHHHHhCCEE
Confidence 4332221 1379999999533210 011234556667788877
Q ss_pred c-cCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCC
Q 008488 321 L-TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (564)
Q Consensus 321 i-~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (564)
+ ++|+..++.+ + ..++.+||||+|...+.+... .+..+..+++++|++.
T Consensus 180 i~~~s~~~~~~~--------~------~~~~~vi~ngvd~~~~~~~~~---------------~~~~~~~~r~~~~~~~- 229 (416)
T 2x6q_A 180 IFHLPEYVQPEL--------D------RNKAVIMPPSIDPLSEKNVEL---------------KQTEILRILERFDVDP- 229 (416)
T ss_dssp EESSGGGSCTTS--------C------TTTEEECCCCBCTTSTTTSCC---------------CHHHHHHHHHHTTCCT-
T ss_pred EEechHHHHhhC--------C------ccceEEeCCCCChhhhccccc---------------ChhhHHHHHHHhCCCC-
Confidence 6 6665543321 1 238899999999876654321 1334677899999974
Q ss_pred CCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCC---hhhHHHHHHHHHhCC--CceEEEecc---ChHH
Q 008488 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK---KPMEKQLEQLEILYP--EKARGVAKF---NIPL 469 (564)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~---~~~~~~l~~L~~~~~--~~v~~~~~~---~~~~ 469 (564)
+.++|+|+||+.++||++.+++|++.+.+ ++++|+|+|+|+ ++.++.++++...++ +++.+.+.+ +.++
T Consensus 230 -~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~ 308 (416)
T 2x6q_A 230 -EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHARE 308 (416)
T ss_dssp -TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHH
T ss_pred -CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHH
Confidence 34899999999999999999999999976 689999999996 234556666665543 578888855 3678
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+..+|+.||++|+||.+|+||++++|||+||+|||+++.||+.|++.++.+|++ ++ |+++++++|.+
T Consensus 309 ~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l----------~~--d~~~la~~i~~ 375 (416)
T 2x6q_A 309 VNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFL----------VR--DANEAVEVVLY 375 (416)
T ss_dssp HHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEE----------ES--SHHHHHHHHHH
T ss_pred HHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEE----------EC--CHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998 44 88888888744
No 13
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.9e-33 Score=294.82 Aligned_cols=323 Identities=18% Similarity=0.189 Sum_probs=228.0
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccc-cccCcceEEEEEeCCeeeeEEEEEeeec
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
.++|||+|++..++| ..||.+.++..|+++|+++||+|.++++...... ..+ . ...
T Consensus 18 ~~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----------------~-----~~~ 74 (406)
T 2gek_A 18 GSHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDY----------------V-----VSG 74 (406)
T ss_dssp ---CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTT----------------E-----EEC
T ss_pred CCcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcc----------------c-----ccC
Confidence 457999999976444 3699999999999999999999999998743220 000 0 001
Q ss_pred CeeEEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
| .++.++...... ++. +. ..+...+.++++.. +|| |||+|.+...
T Consensus 75 ~-~~~~~~~~~~~~--------~~~-------~~------~~~~~~l~~~l~~~------------~~D-ii~~~~~~~~ 119 (406)
T 2gek_A 75 G-KAVPIPYNGSVA--------RLR-------FG------PATHRKVKKWIAEG------------DFD-VLHIHEPNAP 119 (406)
T ss_dssp C-CCC---------------------------CC------HHHHHHHHHHHHHH------------CCS-EEEEECCCSS
T ss_pred C-cEEeccccCCcc--------ccc-------cc------HHHHHHHHHHHHhc------------CCC-EEEECCccch
Confidence 1 122111000000 000 00 01223334444443 499 8999987666
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhccee
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v 320 (564)
.+...+++. .++|+|+++|+..... ... .....+++..+..+|.+
T Consensus 120 ~~~~~~~~~-------~~~~~i~~~h~~~~~~--------------~~~--------------~~~~~~~~~~~~~~d~i 164 (406)
T 2gek_A 120 SLSMLALQA-------AEGPIVATFHTSTTKS--------------LTL--------------SVFQGILRPYHEKIIGR 164 (406)
T ss_dssp SHHHHHHHH-------EESSEEEEECCCCCSH--------------HHH--------------HHHHSTTHHHHTTCSEE
T ss_pred HHHHHHHHh-------cCCCEEEEEcCcchhh--------------hhH--------------HHHHHHHHHHHhhCCEE
Confidence 555554444 2789999999633210 000 00112233667899999
Q ss_pred ccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCC
Q 008488 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (564)
Q Consensus 321 i~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (564)
+++|+..++.+.+. ++ ..++ +|+||+|...+.+.... .+++.
T Consensus 165 i~~s~~~~~~~~~~--~~--------~~~~-vi~~~v~~~~~~~~~~~-------------------------~~~~~-- 206 (406)
T 2gek_A 165 IAVSDLARRWQMEA--LG--------SDAV-EIPNGVDVASFADAPLL-------------------------DGYPR-- 206 (406)
T ss_dssp EESSHHHHHHHHHH--HS--------SCEE-ECCCCBCHHHHHTCCCC-------------------------TTCSC--
T ss_pred EECCHHHHHHHHHh--cC--------CCcE-EecCCCChhhcCCCchh-------------------------hhccC--
Confidence 99999999988752 22 2278 99999998776554311 11211
Q ss_pred CccEEEEEecc-ccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 401 NIPVIGFIGRL-EEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 401 ~~~~i~~iGrl-~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
+.++|+|+||+ .+.||++.+++|++++.+ ++++|+|+|.|+. +.++++..++.+++.+.+..+.+++..+|+.|
T Consensus 207 ~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 283 (406)
T 2gek_A 207 EGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE---DELREQAGDLAGHLRFLGQVDDATKASAMRSA 283 (406)
T ss_dssp SSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH---HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHS
T ss_pred CCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH---HHHHHHHHhccCcEEEEecCCHHHHHHHHHHC
Confidence 34799999999 999999999999999976 6899999999884 55666655555679998888998889999999
Q ss_pred CEEEEcCC-CCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 478 DFILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 478 Dv~v~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|++|+||. .|+||++++|||+||+|||+++.||+.|++.++.+|++ +++.|+++++++|.+
T Consensus 284 dv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~----------~~~~d~~~l~~~i~~ 345 (406)
T 2gek_A 284 DVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRL----------VPVDDADGMAAALIG 345 (406)
T ss_dssp SEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEE----------CCTTCHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEE----------eCCCCHHHHHHHHHH
Confidence 99999996 89999999999999999999999999999999999998 788999999988754
No 14
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=2.7e-32 Score=289.06 Aligned_cols=318 Identities=13% Similarity=0.122 Sum_probs=223.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCeeE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (564)
|||+||+.. +|. .||.+.++..|+++|+++ |+|.+++..... .... .....
T Consensus 1 MkI~~v~~~-~p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g-~~~~------------------------~~~~~ 51 (413)
T 3oy2_A 1 MKLIIVGAH-SSV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFG-RSVH------------------------ANIEE 51 (413)
T ss_dssp CEEEEEEEC-TTC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCS-CCSC------------------------SSSEE
T ss_pred CeEEEecCC-CCC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCC-cccc------------------------ccccc
Confidence 999999986 454 699999999999999999 999999976321 0000 00000
Q ss_pred EEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH
Q 008488 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (564)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~ 244 (564)
+.. . .... ...+.+.. + ....+.+.++.. +|| |||+|.|...+.+.
T Consensus 52 ~~~--~-~~~~------~~~~~~~~---~---------~~~~l~~~l~~~------------~~D-iv~~~~~~~~~~~~ 97 (413)
T 3oy2_A 52 FDA--Q-TAEH------VRGLNEQG---F---------YYSGLSEFIDVH------------KPD-IVMIYNDPIVIGNY 97 (413)
T ss_dssp EEH--H-HHHH------HTTCCSTT---C---------CHHHHHHHHHHH------------CCS-EEEEEECHHHHHHH
T ss_pred CCc--c-cccc------cccccccc---c---------hHHHHHHHHHhc------------CCC-EEEEcchHHHHHHH
Confidence 000 0 0000 00000000 0 011122233332 599 89999665544333
Q ss_pred HHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcc--eecc
Q 008488 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD--MVLT 322 (564)
Q Consensus 245 ~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad--~vi~ 322 (564)
..+... . -...+++..+|+..... ...++..++.+| .+++
T Consensus 98 ~~~~~~--~--~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ii~ 139 (413)
T 3oy2_A 98 LLAMGK--C--SHRTKIVLYVDLVSKNI----------------------------------RENLWWIFSHPKVVGVMA 139 (413)
T ss_dssp HHHGGG--C--CSCCEEEEEECCCSBSC----------------------------------CGGGGGGGGCTTEEEEEE
T ss_pred HHHhcc--C--CCCCceeeeccccchhh----------------------------------HHHHHHHHhccCCceEEE
Confidence 333221 0 01356667777432200 001244577877 9999
Q ss_pred CCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCc
Q 008488 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (564)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (564)
+|+..++.+.+ +|++ .++.+||||+|.+.|. ..+++++++.+.+.
T Consensus 140 ~S~~~~~~~~~---~~~~-------~~~~vi~ngvd~~~~~-------------------------~~~~~~~~~~~~~~ 184 (413)
T 3oy2_A 140 MSKCWISDICN---YGCK-------VPINIVSHFVDTKTIY-------------------------DARKLVGLSEYNDD 184 (413)
T ss_dssp SSTHHHHHHHH---TTCC-------SCEEECCCCCCCCCCT-------------------------THHHHTTCGGGTTS
T ss_pred cCHHHHHHHHH---cCCC-------CceEEeCCCCCHHHHH-------------------------HHHHhcCCCcccCc
Confidence 99999999987 5542 2899999999988772 13667888753356
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChh----hHHHHHHHHHhCC--Cc-------eEEEeccCh
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EK-------ARGVAKFNI 467 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~----~~~~l~~L~~~~~--~~-------v~~~~~~~~ 467 (564)
++|+|+||+.+.||++.+++|++++.+ ++++|+|+|.|+.. +++.++++..+++ ++ +.+.+..+.
T Consensus 185 ~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~ 264 (413)
T 3oy2_A 185 VLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD 264 (413)
T ss_dssp EEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCH
T ss_pred eEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCH
Confidence 899999999999999999999999865 78999999998742 4577777766644 33 555566788
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcc---------------ee--Eeeccccc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT---------------GF--QMGSFSVD 530 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~---------------G~--l~~~~~~~ 530 (564)
+++..+|+.||++|+||.+|+||++++|||+||+|||+|+.||+.|++.++.+ |+ +
T Consensus 265 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl------- 337 (413)
T 3oy2_A 265 ERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGI------- 337 (413)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCE-------
T ss_pred HHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCccee-------
Confidence 99999999999999999999999999999999999999999999999999887 88 8
Q ss_pred cccCCCCCHHHHHhhcccC
Q 008488 531 VIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 531 ~~~v~~~d~~aLa~aI~~~ 549 (564)
+++.|+++|+++| +-
T Consensus 338 ---~~~~d~~~la~~i-~l 352 (413)
T 3oy2_A 338 ---EGIIDVDDLVEAF-TF 352 (413)
T ss_dssp ---EEECCHHHHHHHH-HH
T ss_pred ---eCCCCHHHHHHHH-HH
Confidence 6888999999988 54
No 15
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=6e-33 Score=303.57 Aligned_cols=386 Identities=19% Similarity=0.208 Sum_probs=254.6
Q ss_pred EEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeCCCcccc----ccCc--ce--------EEEE--EeCCee
Q 008488 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPRYDQYKD----AWDT--DV--------VIEL--KVGDKI 149 (564)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~~~~~~~----~~~~--~~--------~~~~--~~~~~~ 149 (564)
+-=+++|+.- |.||+-+|+..=|+.+.+ .|-+..+|.|...+... ..+. .. .... .....-
T Consensus 30 lfE~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G 107 (725)
T 3nb0_A 30 LFETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRG 107 (725)
T ss_dssp EEEEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTT
T ss_pred EEeeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCC
Confidence 4446777654 799999999998888865 58899999996322111 0000 00 0000 001111
Q ss_pred eeEEEEEeeecCeeEEEE-eCCcccc-------cccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCC
Q 008488 150 EKVRFFHCHKRGVDRVFV-DHPWFLA-------KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKY 221 (564)
Q Consensus 150 ~~~~~~~~~~~gv~~~~v-~~~~~~~-------~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~ 221 (564)
-.+++.+.-.+|-+++.+ |...++. ..|...| +=++..+ .+.+...+|.+++.++++.+..+.
T Consensus 108 ~~v~~GrW~i~G~P~viL~d~~~~~~~~~~~~~~lw~~~~--i~s~~~y-g~~dd~~~F~y~~~avl~~l~~~~------ 178 (725)
T 3nb0_A 108 VHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVG--IPSPEND-FETNDAILLGYTVAWFLGEVAHLD------ 178 (725)
T ss_dssp CCEEEEEESSTTCCEEEEECSGGGGGGHHHHHHHHHHHHC--CCCCSSC-HHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEecCCCceEEEEeChHHHHHHHHHHHHHHHHhC--cCCCCcc-cchhHHHHHHHHHHHHHHHHHhcC------
Confidence 236677777888776555 5443332 3452221 1112222 245678999999999999887664
Q ss_pred CCCCCCCCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCc------Cccccc-cccccCCCCccccccccc
Q 008488 222 FSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAY------QGRFAF-EDFGLLNLPAQFKSSFDF 294 (564)
Q Consensus 222 ~~~~~~pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~------~~~~~~-~~~~~~~l~~~~~~~~~~ 294 (564)
++.|| |+|+|||++++++.+++..+ +++++|||+|+... ||.++. ..+...+++.....
T Consensus 179 ---~~~pd-IiH~HDW~tg~~~~~Lk~~~------~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~---- 244 (725)
T 3nb0_A 179 ---SQHAI-VAHFHEWLAGVALPLCRKRR------IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGR---- 244 (725)
T ss_dssp ---CSEEE-EEEEESGGGCTHHHHHHHTT------CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHH----
T ss_pred ---CCCCc-EEEeCchhhhHHHHHHHHhC------CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhh----
Confidence 23589 99999999999999999764 69999999999752 343321 11122221111100
Q ss_pred ccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCcccccccc
Q 008488 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKY 374 (564)
Q Consensus 295 ~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~ 374 (564)
.-.....+++|.++..||.|+|||+.+++++.. .++.+.+ .+|+||||+..|+|...
T Consensus 245 ------~~i~~~~~~EKaga~~AD~ITTVS~~yA~Ei~~--Ll~r~~d--------~iIpNGID~~~f~p~~~------- 301 (725)
T 3nb0_A 245 ------FGIYHRYCIERAAAHSADVFTTVSQITAFEAEH--LLKRKPD--------GILPNGLNVIKFQAFHE------- 301 (725)
T ss_dssp ------TTCHHHHHHHHHHHHHSSEEEESSHHHHHHHHH--HTSSCCS--------EECCCCBCCCCCSSTTH-------
T ss_pred ------hchhHHHHHHHHHHHhCCEEEECCHHHHHHHHH--HhcCCCC--------EEEcCCccccccCcchh-------
Confidence 001235788999999999999999999999986 3444322 33999999999998531
Q ss_pred CcchhhhccHHHHHHHHHHh------CCCCC-CCccEEEEEeccc-cccCHHHHHHHHHhccc---------CCeEEEEE
Q 008488 375 DASTVMDAKPLLKEALQAEV------GLPVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK---------ENVQIIVL 437 (564)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~~~------gl~~~-~~~~~i~~iGrl~-~~KG~d~ll~A~~~l~~---------~~v~lvIv 437 (564)
....+..+|+.+++.+ |++.+ ++.++|+.+||++ ++||+|.+++|+.++.. .-+.|+|+
T Consensus 302 ----~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~ 377 (725)
T 3nb0_A 302 ----FQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVM 377 (725)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEC
T ss_pred ----hHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEe
Confidence 1234556677776654 44443 3456677789999 79999999999998863 13678888
Q ss_pred eCCChh--------------hHHHH-------------------------------------------------------
Q 008488 438 GTGKKP--------------MEKQL------------------------------------------------------- 448 (564)
Q Consensus 438 G~g~~~--------------~~~~l------------------------------------------------------- 448 (564)
..+... +++.+
T Consensus 378 p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~ 457 (725)
T 3nb0_A 378 PAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEG 457 (725)
T ss_dssp CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTT
T ss_pred CCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCC
Confidence 765311 00000
Q ss_pred ----------------------HHHHHh----CCCceEEEecc-ChH------HHHHHHHhcCEEEEcCCCCCCcHHHHH
Q 008488 449 ----------------------EQLEIL----YPEKARGVAKF-NIP------LAHMIIAGADFILIPSRFEPCGLIQLH 495 (564)
Q Consensus 449 ----------------------~~L~~~----~~~~v~~~~~~-~~~------~~~~il~~ADv~v~PS~~E~~gl~~lE 495 (564)
+++.-. .+-++++++.| +.. +...+|++||++|+||++|+||++++|
T Consensus 458 ~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LE 537 (725)
T 3nb0_A 458 QLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAE 537 (725)
T ss_dssp CCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHH
T ss_pred CCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHH
Confidence 001000 01146777777 332 467799999999999999999999999
Q ss_pred HHHcCCcEEEcCccccccccccC-------cceeEe
Q 008488 496 AMRYGTVPIVASTGGLVDTVEEG-------FTGFQM 524 (564)
Q Consensus 496 Ama~G~PvI~s~~gg~~e~v~~g-------~~G~l~ 524 (564)
||+||+|||+|+.||+.|+|.++ .+|+++
T Consensus 538 AmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV 573 (725)
T 3nb0_A 538 CTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYI 573 (725)
T ss_dssp HHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEE
T ss_pred HHHcCCCEEEeCCCChhhhhhccccccCCCCceEEE
Confidence 99999999999999999999886 379884
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=1.4e-29 Score=270.04 Aligned_cols=322 Identities=12% Similarity=0.080 Sum_probs=208.2
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (564)
..+|||++++..+.|....||.. .+.+|+++|+++||+|+|+++......... ....+
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~~~~~~~---------------------~~~~~ 101 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDATPNPKDL---------------------QSFKS 101 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCCCCHHHH---------------------GGGTT
T ss_pred CCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCCCChHHH---------------------Hhhhc
Confidence 56899999999988842357775 588999999999999999998632100000 00001
Q ss_pred eeEEEEeCC-cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcc
Q 008488 162 VDRVFVDHP-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (564)
Q Consensus 162 v~~~~v~~~-~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~ 240 (564)
.....+... .+.. .+.. +.. . ....+.. .++| |||+|.|.++
T Consensus 102 ~~~~~~~~~~~~~~--------~i~~------~~~----------~---~~~~~~~---------~~~D-vv~a~~~~~~ 144 (413)
T 2x0d_A 102 FKYVMPEEDKDFAL--------QIVP------FND----------R---YNRTIPV---------AKHD-IFIATAWWTA 144 (413)
T ss_dssp SEECCTTCCCCCSE--------EEEE------CSC----------C---TTCCEEE---------CTTE-EEEECSHHHH
T ss_pred cceeeccCCccccc--------eeee------ccc----------c---ccccccC---------CCCC-EEEEehHHHH
Confidence 100000000 0000 0000 000 0 0000000 1489 8899988766
Q ss_pred hHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcc--
Q 008488 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD-- 318 (564)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad-- 318 (564)
.....+.......-.....+.++.+|+... .+. . ......+.+..+..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~---------------------~-----~~~~~~~~~~~~~~~~~~ 196 (413)
T 2x0d_A 145 YAAQRIVSWQSDTYGIPPNKILYIIQDFEP--GFY---------------------Q-----WSSQYVLAESTYKYRGPQ 196 (413)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEECSCGG--GGS---------------------C-----SSHHHHHHHHTTSCCSCE
T ss_pred HHHHHhhhhhhhhcccccCcEEEEEeechh--hcC---------------------c-----cChHHHHHHHHhccCCce
Confidence 555443211000000024577777774321 000 0 0001122334445454
Q ss_pred eeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCC
Q 008488 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (564)
Q Consensus 319 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (564)
.++++|++.++.+.+ +|++.. ++.+|+||+|.+.|.+... +
T Consensus 197 ~vi~~S~~~~~~l~~---~g~~~~------~~~~i~~g~d~~~~~~~~~---------------------------~--- 237 (413)
T 2x0d_A 197 IAVFNSELLKQYFNN---KGYNFT------DEYFFQPKINTTLKNYIND---------------------------K--- 237 (413)
T ss_dssp EEEEESHHHHHHHHH---HTCCCS------EEEEECCCCCHHHHTTTTS---------------------------C---
T ss_pred EEEEcCHHHHHHHHH---cCCCCC------ceEEeCCCcCchhhccccc---------------------------c---
Confidence 589999999999986 444322 6789999998765543210 1
Q ss_pred CCCccEEEEEecc-ccccCHHHHHHHHHhccc--C---CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHH
Q 008488 399 DRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--E---NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (564)
Q Consensus 399 ~~~~~~i~~iGrl-~~~KG~d~ll~A~~~l~~--~---~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~ 472 (564)
..+.+.++++||+ .+.||++.+++|++.+.+ + +++|+|+|+|+.. +++ ...+++.+.+..+.+++..
T Consensus 238 ~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----~~l--~~~~~v~f~G~~~~~~l~~ 310 (413)
T 2x0d_A 238 RQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----IAL--GKGIHLNSLGKLTLEDYAD 310 (413)
T ss_dssp CCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----EEE--ETTEEEEEEESCCHHHHHH
T ss_pred cCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----hhc--CCcCcEEEcCCCCHHHHHH
Confidence 1234688999996 689999999999999865 4 3899999998742 111 1224688888889999999
Q ss_pred HHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 473 il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
+|+.||++++||.+|+||++++||||||+|||++ .||..|++.++.+|++ ++|.|+++||++|.
T Consensus 311 ~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~l----------v~~~d~~~la~ai~ 374 (413)
T 2x0d_A 311 LLKRSSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVS----------LEQLNPENIAETLV 374 (413)
T ss_dssp HHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEE----------ESSCSHHHHHHHHH
T ss_pred HHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEE----------eCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999995 5677899999999998 79999999999874
No 17
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.95 E-value=1.7e-26 Score=256.45 Aligned_cols=321 Identities=15% Similarity=0.142 Sum_probs=233.9
Q ss_pred HHHHHHHHHh-hhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH-HHHhhccCCCC-----C--CCCeEEEEEccCCcC
Q 008488 201 SLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQ 271 (564)
Q Consensus 201 ~~~~~~~l~~-~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~-~l~~~~~~~~~-----~--~~~kvv~tiH~~~~~ 271 (564)
.+|+.+.++. ++.+..... -|..--.|| |||+||||+++++. +++..+...+. + ...+++||+|++.++
T Consensus 263 ~ff~~a~lq~ilr~~~~~~~-~l~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~e 340 (796)
T 2c4m_A 263 YFFTSASLQAMIQDHLAHHK-DLSNFAEFH-SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTE 340 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-CSTTHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSST
T ss_pred HHHHHHHHHHHHHHHHHhCC-ChhhcCCCe-EEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHH
Confidence 4678888874 554411000 000000488 99999999999888 66544311111 0 256799999999999
Q ss_pred cc--ccccccccCC---------CCcccccccccccC------CCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcC
Q 008488 272 GR--FAFEDFGLLN---------LPAQFKSSFDFIDG------YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG 334 (564)
Q Consensus 272 ~~--~~~~~~~~~~---------l~~~~~~~~~~~~~------~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~ 334 (564)
|. |+...+..+- ++..+...+....+ ..........++++.++..|+.|.+||+-+.+.+...
T Consensus 341 gle~wp~~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~ 420 (796)
T 2c4m_A 341 ALEQWDEQIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAE 420 (796)
T ss_dssp TSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHT
T ss_pred HhhhCCHHHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhh
Confidence 85 5544432210 11111110000000 0001112257899999999999999999999998852
Q ss_pred ccCCCcchhhhhccceEEecCCcccCCC----CCCCccccccccC-----------------cch------hhhccHHHH
Q 008488 335 EDKGVELDNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD-----------------AST------VMDAKPLLK 387 (564)
Q Consensus 335 ~~~g~~~~~~~~~~~i~~I~NGid~~~~----~p~~~~~~~~~~~-----------------~~~------~~~~~~~~~ 387 (564)
.++ +. .-+.+.++..|.||||...| +|..++.|...|+ .++ +.+.|..+|
T Consensus 421 -~f~-~~-~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK 497 (796)
T 2c4m_A 421 -TLA-DW-YALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANK 497 (796)
T ss_dssp -TTH-HH-HHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHH
T ss_pred -hhh-hH-HHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 222 10 01123489999999999999 7887777777777 444 457788888
Q ss_pred HH----HHHHhCCCCCCCccEEEEEeccccccCHHH-HHHHHHhccc---------CCeEEEEEeCCChhhHHH------
Q 008488 388 EA----LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ------ 447 (564)
Q Consensus 388 ~~----l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~-ll~A~~~l~~---------~~v~lvIvG~g~~~~~~~------ 447 (564)
.. ++++.|++.+++.+.++++.|+.++||+++ ++..+..+.+ .++++|+.|.+.+.++..
T Consensus 498 ~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~ 577 (796)
T 2c4m_A 498 QDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKL 577 (796)
T ss_dssp HHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHH
Confidence 88 599999999989999999999999999999 8888877753 379999999998544443
Q ss_pred HHHHHH------hCCC--ceEEEeccChHHHHHHHHhcCEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc
Q 008488 448 LEQLEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (564)
Q Consensus 448 l~~L~~------~~~~--~v~~~~~~~~~~~~~il~~ADv~v~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (564)
+.+++. ++++ +|.+...|+..+++.++++||++++||+ +|+||++.+-+|.+|++.|++-.|.+.|+.++
T Consensus 578 i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~ 657 (796)
T 2c4m_A 578 INSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDS 657 (796)
T ss_dssp HHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHH
T ss_pred HHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhh
Confidence 777777 6777 8999999999999999999999999999 89999999999999999999999999998765
Q ss_pred --CcceeEeec
Q 008488 518 --GFTGFQMGS 526 (564)
Q Consensus 518 --g~~G~l~~~ 526 (564)
.+|||+||.
T Consensus 658 vG~~NgF~FG~ 668 (796)
T 2c4m_A 658 VGEENAYIFGA 668 (796)
T ss_dssp HCGGGSEEESC
T ss_pred cCCCcEEEecC
Confidence 469999996
No 18
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.95 E-value=1.2e-26 Score=257.61 Aligned_cols=319 Identities=15% Similarity=0.181 Sum_probs=233.8
Q ss_pred HHHHHHHHHh-hhhhccCCCCCCCCCCCCCEEEEEcCCCcchHHH-HHHhhccCCCC-----C--CCCeEEEEEccCCcC
Q 008488 201 SLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQ 271 (564)
Q Consensus 201 ~~~~~~~l~~-~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~~-~l~~~~~~~~~-----~--~~~kvv~tiH~~~~~ 271 (564)
.+|+.+.++. ++.+..... -|..--.|| |||+||||+++++. +++..+...+. + ...+++||+|++.++
T Consensus 273 ~ff~~a~lq~ilr~~~~~~~-~~~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~e 350 (796)
T 1l5w_A 273 YFQCACSVADILRRHHLAGR-KLHELADYE-VIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPE 350 (796)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CGGGHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGG
T ss_pred HHHHHHHHHHHHHHHHHcCC-ChhhcCCcc-EEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHh
Confidence 4678888875 554321000 000000488 99999999999888 66544311111 1 367899999999998
Q ss_pred cc--ccccccccCCCCcccc----------cc----c----ccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHH
Q 008488 272 GR--FAFEDFGLLNLPAQFK----------SS----F----DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQEL 331 (564)
Q Consensus 272 ~~--~~~~~~~~~~l~~~~~----------~~----~----~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l 331 (564)
|. |+...+..+ +|..+. .. + .... ..........++++.++..|+.|.+||+-+.+.+
T Consensus 351 gle~wp~~l~~~~-lpr~~~ii~~I~~~f~~~~~~~~~~~~~~~~-~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~i 428 (796)
T 1l5w_A 351 ALERWDVKLVKGL-LPRHMQIINEINTRFKTLVEKTWPGDEKVWA-KLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLV 428 (796)
T ss_dssp GSCEEEHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH-HHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHH
T ss_pred hhhcCCHHHHHHH-hHHHHHHHhccCHHHHHHHHHhcCCcHHHHh-hhhcccCCcccHHHHHHHhcCccccccHHHHHHH
Confidence 85 554433221 111110 00 0 0000 0000112257899999999999999999999998
Q ss_pred HcCccCCCcchhhhhccceEEecCCcccCCC----CCCCccccccccC----------------cch------hhhccHH
Q 008488 332 VSGEDKGVELDNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD----------------AST------VMDAKPL 385 (564)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~----~p~~~~~~~~~~~----------------~~~------~~~~~~~ 385 (564)
+.. .++ +. .-+.+.++..|.||||...| +|..++.|...|+ .++ +.+.|..
T Consensus 429 k~~-~f~-~~-~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~ 505 (796)
T 1l5w_A 429 VKD-LFP-EY-HQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQA 505 (796)
T ss_dssp HHT-TSH-HH-HHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHH
T ss_pred HhH-Hhh-HH-HHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 752 222 10 01123489999999999999 7887777877777 443 4578888
Q ss_pred HHHH----HHHHhCCCCCCCccEEEEEeccccccCHHH-HHHHHHhccc---------CCeEEEEEeCCChhhHHH----
Q 008488 386 LKEA----LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ---- 447 (564)
Q Consensus 386 ~~~~----l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~-ll~A~~~l~~---------~~v~lvIvG~g~~~~~~~---- 447 (564)
+|.. +++++|++.+++.+.++++.|+.++||+++ ++..+..+.+ .++++|+.|.+.+.++..
T Consensus 506 nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iI 585 (796)
T 1l5w_A 506 NKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNII 585 (796)
T ss_dssp HHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHH
Confidence 8988 599999999989999999999999999999 8888877755 479999999998544443
Q ss_pred --HHHHHH------hCCC--ceEEEeccChHHHHHHHHhcCEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccc
Q 008488 448 --LEQLEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515 (564)
Q Consensus 448 --l~~L~~------~~~~--~v~~~~~~~~~~~~~il~~ADv~v~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v 515 (564)
+.+++. .+++ +|.++..|+..+++.++++||++++||+ +|+||++.+-+|.+|++.|++-.|.+.|+.
T Consensus 586 k~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~ 665 (796)
T 1l5w_A 586 FAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA 665 (796)
T ss_dssp HHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHH
T ss_pred HHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehh
Confidence 777776 6667 8999999999999999999999999999 899999999999999999999999999987
Q ss_pred cc--CcceeEeec
Q 008488 516 EE--GFTGFQMGS 526 (564)
Q Consensus 516 ~~--g~~G~l~~~ 526 (564)
++ .+|||+||.
T Consensus 666 e~vG~~NgF~FG~ 678 (796)
T 1l5w_A 666 EKVGEENIFIFGH 678 (796)
T ss_dssp HHHCGGGSEECSC
T ss_pred hccCCCcEEEecC
Confidence 65 469999985
No 19
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.94 E-value=1.2e-26 Score=246.65 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=137.7
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHH
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+++..++.+|.|+++|+..++.+.+ ++ ++.+||||+|.+.|.|....
T Consensus 169 ~~~~~~~~~~ad~vi~~S~~~~~~~~~---~~----------~i~vipngvd~~~f~~~~~~------------------ 217 (406)
T 2hy7_A 169 EREFDRVAPTLDVIALVSPAMAAEVVS---RD----------NVFHVGHGVDHNLDQLGDPS------------------ 217 (406)
T ss_dssp HHHHHHHGGGCSEEEESCGGGGGGCSC---ST----------TEEECCCCBCTTHHHHHCSC------------------
T ss_pred HHHHHHHHHhCCEEEEcCHHHHHHHHh---cC----------CEEEEcCCcChHhcCccccc------------------
Confidence 456777889999999999999888765 22 78999999998877543210
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccC
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~ 466 (564)
+ .+..++++|+||+.+.||+ ++++.+. .++++|+|+|+|+ ++++ ...++|.+.+..+
T Consensus 218 ----------~-~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~g~------~~~~--~l~~~V~f~G~~~ 274 (406)
T 2hy7_A 218 ----------P-YAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGSGM------GRHP--GYGDNVIVYGEMK 274 (406)
T ss_dssp ----------S-CCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESCSS------CCCT--TCCTTEEEECCCC
T ss_pred ----------c-cCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeCch------HHhc--CCCCCEEEcCCCC
Confidence 1 1233799999999999999 4444332 3789999999986 1111 1346799999889
Q ss_pred hHHHHHHHHhcCEEEEcCCCCCCcHHHHHHH-------HcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCH
Q 008488 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAM-------RYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYN 539 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~E~~gl~~lEAm-------a~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~ 539 (564)
.+++..+|+.||++|+||..|+||++++||| +||+|||+|+. +.++.+|++. ++++|+
T Consensus 275 ~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~---------v~~~d~ 339 (406)
T 2hy7_A 275 HAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFG---------YTPGNA 339 (406)
T ss_dssp HHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEE---------ECTTCH
T ss_pred HHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEE---------eCCCCH
Confidence 8899999999999999999999999999999 99999999987 6778899861 388999
Q ss_pred HHHHhhccc
Q 008488 540 SRVIPRIPL 548 (564)
Q Consensus 540 ~aLa~aI~~ 548 (564)
++|+++|.+
T Consensus 340 ~~la~ai~~ 348 (406)
T 2hy7_A 340 DSVIAAITQ 348 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998843
No 20
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.94 E-value=7.6e-26 Score=235.19 Aligned_cols=305 Identities=14% Similarity=-0.005 Sum_probs=199.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccccccCcceEEEEEeCCeeeeEEEEEeeecCee
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (564)
+|||++++. + .||....+..|+++|+++||+|.++++..+...... ...|++
T Consensus 6 ~mkIl~~~~---~---~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----------------------~~~g~~ 57 (364)
T 1f0k_A 6 GKRLMVMAG---G---TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLV----------------------PKHGIE 57 (364)
T ss_dssp -CEEEEECC---S---SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHG----------------------GGGTCE
T ss_pred CcEEEEEeC---C---CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhc----------------------cccCCc
Confidence 489999973 2 588888899999999999999999998643111100 013555
Q ss_pred EEEEeCCcccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCEEEEEcCCCcchHH
Q 008488 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (564)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~iy~~~~~~~~~~~~~r~~~~~~~~l~~~~~l~~~~~~~~~~~~~pDvIih~h~~~~~~~~ 243 (564)
++.+..+.+... .... ......++......+.+++++. +|| |||+|.....+..
T Consensus 58 ~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~l~~~l~~~------------~pD-vv~~~~~~~~~~~ 111 (364)
T 1f0k_A 58 IDFIRISGLRGK-------GIKA------LIAAPLRIFNAWRQARAIMKAY------------KPD-VVLGMGGYVSGPG 111 (364)
T ss_dssp EEECCCCCCTTC-------CHHH------HHTCHHHHHHHHHHHHHHHHHH------------CCS-EEEECSSTTHHHH
T ss_pred eEEecCCccCcC-------ccHH------HHHHHHHHHHHHHHHHHHHHhc------------CCC-EEEEeCCcCchHH
Confidence 555433211110 0000 0001111222233334444443 599 8899865433333
Q ss_pred HHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCchhHHHHHHHHhcceeccC
Q 008488 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (564)
Q Consensus 244 ~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 323 (564)
..+.+. .++|+|++.|+... + ...+...+.+|.++++
T Consensus 112 ~~~~~~-------~~~p~v~~~~~~~~-~-----------------------------------~~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 112 GLAAWS-------LGIPVVLHEQNGIA-G-----------------------------------LTNKWLAKIATKVMQA 148 (364)
T ss_dssp HHHHHH-------TTCCEEEEECSSSC-C-----------------------------------HHHHHHTTTCSEEEES
T ss_pred HHHHHH-------cCCCEEEEecCCCC-c-----------------------------------HHHHHHHHhCCEEEec
Confidence 344433 37899999985321 0 0122334579999988
Q ss_pred CHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCcc
Q 008488 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (564)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (564)
++.. ++ ++.+|+||+|...+.+.. .+++++++.+ ...
T Consensus 149 ~~~~-----------~~--------~~~~i~n~v~~~~~~~~~-----------------------~~~~~~~~~~-~~~ 185 (364)
T 1f0k_A 149 FPGA-----------FP--------NAEVVGNPVRTDVLALPL-----------------------PQQRLAGREG-PVR 185 (364)
T ss_dssp STTS-----------SS--------SCEECCCCCCHHHHTSCC-----------------------HHHHHTTCCS-SEE
T ss_pred Chhh-----------cC--------CceEeCCccchhhcccch-----------------------hhhhcccCCC-CcE
Confidence 7643 11 567999999877665421 1345666533 223
Q ss_pred EEEEEeccccccCHHHHHHHHHhcccCCeE-EEEEeCCChhhHHHHHHHHHhCC-CceEEEeccChHHHHHHHHhcCEEE
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQ-IIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~-lvIvG~g~~~~~~~l~~L~~~~~-~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
++++.|++.+.||.+.+++|++.+.+ +++ ++++|.|+ .+.++++..+++ .++.+.+.. +++..+|+.||++|
T Consensus 186 il~~~g~~~~~k~~~~li~a~~~l~~-~~~~l~i~G~~~---~~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v 259 (364)
T 1f0k_A 186 VLVVGGSQGARILNQTMPQVAAKLGD-SVTIWHQSGKGS---QQSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVV 259 (364)
T ss_dssp EEEECTTTCCHHHHHHHHHHHHHHGG-GEEEEEECCTTC---HHHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEE
T ss_pred EEEEcCchHhHHHHHHHHHHHHHhcC-CcEEEEEcCCch---HHHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEE
Confidence 55566799999999999999999965 788 56788887 245555555554 468877766 44567999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccc--------cccccCcceeEeeccccccccCCCCC--HHHHHhhcccC
Q 008488 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLV--------DTVEEGFTGFQMGSFSVDVIYSSPSY--NSRVIPRIPLD 549 (564)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~--------e~v~~g~~G~l~~~~~~~~~~v~~~d--~~aLa~aI~~~ 549 (564)
+||. |++++|||+||+|+|+++.+|.. ++++++ .|++ ++++| +++|+++|.+-
T Consensus 260 ~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~----------~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 260 CRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKI----------IEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp ECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEE----------CCGGGCCHHHHHHHHHTC
T ss_pred ECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEE----------eccccCCHHHHHHHHHhc
Confidence 9983 99999999999999999999875 455554 5998 78877 89999988643
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.93 E-value=7.4e-25 Score=237.34 Aligned_cols=257 Identities=15% Similarity=0.151 Sum_probs=177.8
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
+| |||+|||+..+++.+++... +++|+++++|.. |+... +..+ + .
T Consensus 124 ~D-iV~vHdyhl~~l~~~lr~~~------~~~~i~~~~H~p-----fp~~~~~~~l--p-------------------~- 169 (482)
T 1uqt_A 124 DD-IIWIHDYHLLPFAHELRKRG------VNNRIGFFLHIP-----FPTPEIFNAL--P-------------------T- 169 (482)
T ss_dssp TC-EEEEESGGGTTHHHHHHHTT------CCSCEEEECCSC-----CCCHHHHTTS--T-------------------T-
T ss_pred CC-EEEEECchHHHHHHHHHHhC------CCCcEEEEEcCC-----CCCHHHHhhC--c-------------------c-
Confidence 69 99999999999999888753 589999999952 32111 1111 0 0
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--CCCc------chhhhhccceEEecCCcccCCCCCCCccccccccCcch
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVE------LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~------~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~ 378 (564)
...+...+..+|.+.+.+..+.+.+.+... .+.+ ....-+..++.+||||||++.|.+....
T Consensus 170 ~~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~---------- 239 (482)
T 1uqt_A 170 YDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAG---------- 239 (482)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHS----------
T ss_pred HHHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcC----------
Confidence 011222344667766666665555432110 0000 0000012478999999998877542100
Q ss_pred hhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--C----CeEEEEEeCC-----C--hhhH
Q 008488 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTG-----K--KPME 445 (564)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~----~v~lvIvG~g-----~--~~~~ 445 (564)
..... .++++++++ +.++|+++||+++.||++.+++|++++.+ + ++.|+++|.+ + .+++
T Consensus 240 --~~~~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~ 311 (482)
T 1uqt_A 240 --PLPPK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIR 311 (482)
T ss_dssp --CCCHH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHH
T ss_pred --cchHH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHH
Confidence 00111 456788886 34799999999999999999999999865 2 4789999963 1 1356
Q ss_pred HHHHHHHHhCC--------CceEEE-eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCcccc
Q 008488 446 KQLEQLEILYP--------EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGGL 511 (564)
Q Consensus 446 ~~l~~L~~~~~--------~~v~~~-~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~-----PvI~s~~gg~ 511 (564)
++++++..+.+ ..++++ +.++.+++..+|+.||++|+||.+|+||++++|||+||+ |+|+|+.+|.
T Consensus 312 ~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~ 391 (482)
T 1uqt_A 312 HQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (482)
T ss_dssp HHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGG
T ss_pred HHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCC
Confidence 66666654321 126654 556889999999999999999999999999999999997 8999998888
Q ss_pred ccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 512 VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 512 ~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+.+. +|++ |+|.|++++|++|.+.
T Consensus 392 ~~~l~---~g~l----------v~p~d~~~lA~ai~~l 416 (482)
T 1uqt_A 392 ANELT---SALI----------VNPYDRDEVAAALDRA 416 (482)
T ss_dssp GGTCT---TSEE----------ECTTCHHHHHHHHHHH
T ss_pred HHHhC---CeEE----------ECCCCHHHHHHHHHHH
Confidence 88773 7888 7999999999988654
No 22
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.92 E-value=8.4e-24 Score=220.43 Aligned_cols=190 Identities=14% Similarity=0.077 Sum_probs=142.4
Q ss_pred HHHHHH-HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCC-cccCCCCCCCccccccccCcchhhhccHHH
Q 008488 309 WMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 309 ~~k~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NG-id~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
+.+..+ +.+|.++++|+..++.+.+ +|++.+ ++.+|+|| +|...+.+....
T Consensus 142 ~~~~~~~~~~d~ii~~s~~~~~~~~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~~------------------ 194 (375)
T 3beo_A 142 MNRQLTGVMADLHFSPTAKSATNLQK---ENKDES------RIFITGNTAIDALKTTVKETY------------------ 194 (375)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHCCSSC------------------
T ss_pred hhhhHHhhhhheeeCCCHHHHHHHHH---cCCCcc------cEEEECChhHhhhhhhhhhhh------------------
Confidence 344434 3599999999999999876 566544 89999999 787655432100
Q ss_pred HHHHHHHhCCCCCCCccEEEEEeccccc-cCHHHHHHHHHhccc--CCeEEEEEeCCC-hhhHHHHHHHHHhCCCceEEE
Q 008488 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGV 462 (564)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~-KG~d~ll~A~~~l~~--~~v~lvIvG~g~-~~~~~~l~~L~~~~~~~v~~~ 462 (564)
+.++++++ + ++..+++++||+.+. ||++.+++|++++.+ +++++++ |.|+ ..+++.++++... .+++.+.
T Consensus 195 ~~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~-~~~v~~~ 268 (375)
T 3beo_A 195 SHPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGD-YGRIHLI 268 (375)
T ss_dssp CCHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTT-CTTEEEE
T ss_pred hHHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhc-cCCEEEe
Confidence 12234443 2 234578899999886 999999999999865 6888655 6554 3456666666322 2468888
Q ss_pred eccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCcceeEeeccccccccCCCCCHHH
Q 008488 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSR 541 (564)
Q Consensus 463 ~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~a 541 (564)
+..+..++..+|+.||++|+|| |.+++|||+||+|||+++. ||..|++.+| +|++ +++ |+++
T Consensus 269 g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~----------v~~-d~~~ 331 (375)
T 3beo_A 269 EPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKL----------AGT-DEET 331 (375)
T ss_dssp CCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEE----------CCS-CHHH
T ss_pred CCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEE----------cCC-CHHH
Confidence 8777778888999999999999 7789999999999999965 9999999887 9998 665 8888
Q ss_pred HHhhccc
Q 008488 542 VIPRIPL 548 (564)
Q Consensus 542 La~aI~~ 548 (564)
|+++|.+
T Consensus 332 la~~i~~ 338 (375)
T 3beo_A 332 IFSLADE 338 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887743
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.92 E-value=1.5e-24 Score=206.47 Aligned_cols=168 Identities=31% Similarity=0.496 Sum_probs=144.0
Q ss_pred EecCCcccCCCC--CCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccc-cccCHHHHHHHHHhcc
Q 008488 352 GIVNGMDVQEWN--PLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFI 428 (564)
Q Consensus 352 ~I~NGid~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~-~~KG~d~ll~A~~~l~ 428 (564)
+||||+|.+.|. |... .....+..+++++|++. .++|+|+||+. +.||++.+++|+..+.
T Consensus 1 gipngvd~~~f~~~~~~~--------------~~~~~~~~~r~~~~~~~---~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG--------------SRDERKKSLLSKFGMDE---GVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ----CCCTTTSSGGGSCS--------------CHHHHHHHHHHHTTCCS---CEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCCccChhhcccccccc--------------chhhHHHHHHHHcCCCC---CCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 489999999998 7541 12334677899999973 35999999999 9999999999999995
Q ss_pred --c--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEE-EeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcE
Q 008488 429 --K--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP 503 (564)
Q Consensus 429 --~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~-~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~Pv 503 (564)
+ ++++|+|+|.++++..+.++++..+++ ++.+ .+..+.+++..+|+.||++|+||.+|+||++++|||+||+||
T Consensus 64 ~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142 (200)
T ss_dssp TSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEE
T ss_pred hhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCE
Confidence 4 689999999988666778888888877 7998 888888889999999999999999999999999999999999
Q ss_pred EEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 504 IVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 504 I~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+++.|++.|++ ++.+|++ +++.|+++++++|.+
T Consensus 143 I~~~~~~~~e~~-~~~~g~~----------~~~~~~~~l~~~i~~ 176 (200)
T 2bfw_A 143 IASAVGGLRDII-TNETGIL----------VKAGDPGELANAILK 176 (200)
T ss_dssp EEESCHHHHHHC-CTTTCEE----------ECTTCHHHHHHHHHH
T ss_pred EEeCCCChHHHc-CCCceEE----------ecCCCHHHHHHHHHH
Confidence 999999999999 8999998 688899999998754
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.91 E-value=1.6e-23 Score=219.28 Aligned_cols=245 Identities=15% Similarity=0.057 Sum_probs=167.2
Q ss_pred CCCEEEEEcCC-CcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccCc
Q 008488 227 GEDVVFVANDW-HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (564)
Q Consensus 227 ~pDvIih~h~~-~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (564)
+|| |||+|.. ...+......+. .++|++++.|+...... + . ..
T Consensus 86 ~pD-vv~~~~~~~~~~~~~~~a~~-------~~ip~v~~~~~~~~~~~--------------~-----------~---~~ 129 (384)
T 1vgv_A 86 KPD-VVLVHGDTTTTLATSLAAFY-------QRIPVGHVEAGLRTGDL--------------Y-----------S---PW 129 (384)
T ss_dssp CCS-EEEEETTCHHHHHHHHHHHT-------TTCCEEEESCCCCCSCT--------------T-----------S---ST
T ss_pred CCC-EEEEeCCchHHHHHHHHHHH-------HCCCEEEEecccccccc--------------c-----------C---CC
Confidence 599 8999865 333333333332 48899998885321000 0 0 00
Q ss_pred hhHHHHHH-HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhcc
Q 008488 306 KINWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAK 383 (564)
Q Consensus 306 ~~~~~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (564)
...+.+.. .+.+|.++++|+..++.+.+ +|++.+ ++.+++||+ |...+.+... ...
T Consensus 130 ~~~~~~~~~~~~~d~ii~~s~~~~~~l~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~-------------~~~ 187 (384)
T 1vgv_A 130 PEEANRTLTGHLAMYHFSPTETSRQNLLR---ENVADS------RIFITGNTVIDALLWVRDQV-------------MSS 187 (384)
T ss_dssp THHHHHHHHHTTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHT-------------TTC
T ss_pred chHhhHHHHHhhccEEEcCcHHHHHHHHH---cCCChh------hEEEeCChHHHHHHhhhhcc-------------ccc
Confidence 11223333 34599999999999999875 676544 789999995 4321111000 000
Q ss_pred HHHHHHHHHHhC-CCCCCCccEEEEEeccccc-cCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCce
Q 008488 384 PLLKEALQAEVG-LPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKA 459 (564)
Q Consensus 384 ~~~~~~l~~~~g-l~~~~~~~~i~~iGrl~~~-KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v 459 (564)
...+.++++++| ++.+ +..+++++||+.++ ||++.+++|+.++.+ ++++++++++..+.+++.++++... .+++
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~-~~~v 265 (384)
T 1vgv_A 188 DKLRSELAANYPFIDPD-KKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGH-VKNV 265 (384)
T ss_dssp HHHHHHHHTTCTTCCTT-SEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTT-CTTE
T ss_pred hhhhHHHHHhccccCCC-CCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhc-CCCE
Confidence 111246677888 7432 33578899999876 999999999999865 6899988633223456677666433 2468
Q ss_pred EEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCcceeEeeccccccccCCCCC
Q 008488 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDVIYSSPSY 538 (564)
Q Consensus 460 ~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d 538 (564)
.+.+..+.+++..+|+.||++|.|| |.+++|||+||+|||+++. ||..|++++| +|++ +++ |
T Consensus 266 ~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~l----------v~~-d 328 (384)
T 1vgv_A 266 ILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRL----------VGT-D 328 (384)
T ss_dssp EEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEE----------ECS-S
T ss_pred EEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEE----------eCC-C
Confidence 8877666678888999999999999 4458999999999999986 9999999888 9998 566 8
Q ss_pred HHHHHhhccc
Q 008488 539 NSRVIPRIPL 548 (564)
Q Consensus 539 ~~aLa~aI~~ 548 (564)
+++|+++|.+
T Consensus 329 ~~~la~~i~~ 338 (384)
T 1vgv_A 329 KQRIVEEVTR 338 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887743
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.91 E-value=1.9e-23 Score=224.77 Aligned_cols=255 Identities=13% Similarity=0.148 Sum_probs=188.5
Q ss_pred CCEEEEEcCCCcchHHHHHHhhccCCCCCCCCeEEEEEccCCcCccccccc-cccCCCCcccccccccccCCCCCccCch
Q 008488 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (564)
Q Consensus 228 pDvIih~h~~~~~~~~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (564)
.| +|..||+|..++|.+++.+. ++.++.|.+|. .||..+ |..+ |.. .
T Consensus 150 ~D-~VwVhDYhL~llp~~lR~~~------~~~~igfFlHi-----PfPs~e~f~~L--p~~------------------~ 197 (496)
T 3t5t_A 150 DP-VYLVHDYQLVGVPALLREQR------PDAPILLFVHI-----PWPSADYWRIL--PKE------------------I 197 (496)
T ss_dssp SC-EEEEESGGGTTHHHHHHHHC------TTSCEEEECCS-----CCCCHHHHTTS--CHH------------------H
T ss_pred CC-EEEEeCccHhHHHHHHHhhC------CCCeEEEEEcC-----CCCCHHHHhhC--cHh------------------H
Confidence 57 89999999999999999876 78999999993 343221 1111 110 1
Q ss_pred hHHHHHHHHhcceeccCCHHHHHHHHcCcc--C-CCcch-------hhhhccceEEecCCcccCCCCCCCccccccccCc
Q 008488 307 INWMKAGILESDMVLTVSPHYAQELVSGED--K-GVELD-------NIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (564)
Q Consensus 307 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~-g~~~~-------~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~ 376 (564)
...+-.++..+|.|.+.++.+++.+.+.+. . |.+.+ ..=+..++.++|+|||++.|.+....
T Consensus 198 r~ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-------- 269 (496)
T 3t5t_A 198 RTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-------- 269 (496)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC--------
T ss_pred HHHHHHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH--------
Confidence 133446788999999999999988765321 1 32211 00112478899999999999775310
Q ss_pred chhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CC---eEEEEEeC-----CC--hhh
Q 008488 377 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN---VQIIVLGT-----GK--KPM 444 (564)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~---v~lvIvG~-----g~--~~~ 444 (564)
.++++++++| +.++|+++||+++.||++.+++|+ ++.+ ++ +.|+++|. ++ .++
T Consensus 270 ---------~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l 334 (496)
T 3t5t_A 270 ---------LPEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADY 334 (496)
T ss_dssp ---------CCTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHH
T ss_pred ---------HHHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHH
Confidence 0255677776 347999999999999999999999 7755 43 66888874 22 245
Q ss_pred HHHHHHHHHhCCC-----ceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcC---CcEEEcCccccccccc
Q 008488 445 EKQLEQLEILYPE-----KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG---TVPIVASTGGLVDTVE 516 (564)
Q Consensus 445 ~~~l~~L~~~~~~-----~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G---~PvI~s~~gg~~e~v~ 516 (564)
+++++++..+.+. .|++.+..+.+++..+|+.||++++||.+|+||++.+|||+|| .|+|+|+.+|..+.+.
T Consensus 335 ~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~ 414 (496)
T 3t5t_A 335 VHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG 414 (496)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG
T ss_pred HHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC
Confidence 6677777554321 4888887788889999999999999999999999999999997 8999999999888884
Q ss_pred cCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 517 EGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 517 ~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+|++ |+|.|++++|++|.+.
T Consensus 415 --~~all----------VnP~D~~~lA~AI~~a 435 (496)
T 3t5t_A 415 --EYCRS----------VNPFDLVEQAEAISAA 435 (496)
T ss_dssp --GGSEE----------ECTTBHHHHHHHHHHH
T ss_pred --CCEEE----------ECCCCHHHHHHHHHHH
Confidence 37888 8999999999998654
No 26
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.91 E-value=1.1e-23 Score=232.60 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=124.8
Q ss_pred hcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhC
Q 008488 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (564)
Q Consensus 316 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (564)
.+|.++++|+...+ ++ .++.+|||.++.....+... +..+++++|
T Consensus 328 ~~d~~i~~s~~~~~-------~~---------~~i~~ipn~~~~~~~~~~~~-------------------~~~~r~~~~ 372 (568)
T 2vsy_A 328 LGDAFALPPALEPF-------YS---------EHVLRLQGAFQPSDTSRVVA-------------------EPPSRTQCG 372 (568)
T ss_dssp EECTTTSCTTTGGG-------CS---------SEEEECSSCSCCCCTTCCCC-------------------CCCCTGGGT
T ss_pred EECCCcCCcccccC-------Cc---------ceeEcCCCcCCCCCCCCCCC-------------------CCCCccccC
Confidence 48999999986432 11 27899999543322111110 112467788
Q ss_pred CCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEe-CCChhhHHHHHHHHHhCC---CceEEEeccChHH
Q 008488 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLG-TGKKPMEKQLEQLEILYP---EKARGVAKFNIPL 469 (564)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG-~g~~~~~~~l~~L~~~~~---~~v~~~~~~~~~~ 469 (564)
++.+ ++++++||+.+ ||++.+++|+.++.+ ++++|+|+| +|+ .++.++++..+++ ++|.+.+..+.++
T Consensus 373 ~~~~---~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~--~~~~l~~~~~~~~l~~~~v~~~g~~~~~~ 446 (568)
T 2vsy_A 373 LPEQ---GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE--ADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446 (568)
T ss_dssp CCTT---SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT--HHHHHHHHHHHTTCCGGGEEEECCCCHHH
T ss_pred CCCC---CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHcCCChhHEEeeCCCCHHH
Confidence 8643 35669999999 999999999999865 799999999 776 5666777766653 5689888888888
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEE-------cCcc-------cccccccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV-------ASTG-------GLVDTVEE 517 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~-------s~~g-------g~~e~v~~ 517 (564)
+..+|+.||++|+||.+ ++|++++|||+||+|||+ |+.| |+.|+|.+
T Consensus 447 ~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~ 507 (568)
T 2vsy_A 447 YLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA 507 (568)
T ss_dssp HHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS
T ss_pred HHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC
Confidence 88999999999999999 999999999999999999 9999 99998864
No 27
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.91 E-value=5.9e-24 Score=236.83 Aligned_cols=295 Identities=17% Similarity=0.179 Sum_probs=219.7
Q ss_pred CCCEEEEEcCCCcchHHH-HHHhhccCCCCC-------CCCeEEEEEccCCcCcc--ccccccccCCCCc----------
Q 008488 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGMY-------KSAKVVFCIHNIAYQGR--FAFEDFGLLNLPA---------- 286 (564)
Q Consensus 227 ~pDvIih~h~~~~~~~~~-~l~~~~~~~~~~-------~~~kvv~tiH~~~~~~~--~~~~~~~~~~l~~---------- 286 (564)
.|| |||+||||+++++. +++..+...+.- ....++||+|++.++|. |+...+..+ +|.
T Consensus 320 ~p~-viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~l-LPr~~~ii~~in~ 397 (824)
T 2gj4_A 320 DKV-AIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETL-LPRHLQIIYEINQ 397 (824)
T ss_dssp HHE-EEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHH-CHHHHHHHHHHHH
T ss_pred CCc-EEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHh-CchHHHHHHHHHH
Confidence 378 99999999999888 665543221110 13349999999999997 765554331 111
Q ss_pred cccc-----------ccccccCCCCCccCchhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecC
Q 008488 287 QFKS-----------SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (564)
Q Consensus 287 ~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~N 355 (564)
.+.. .+......+. -.....++++.++..|+.|.+||+-+.+.+... .++ +.-. ..+.++..|.|
T Consensus 398 ~f~~~~~~~~~~~~~~~~~~~~i~~-~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~-~f~-~~~~-~~p~k~~~iTN 473 (824)
T 2gj4_A 398 RFLNRVAAAFPGDVDRLRRMSLVEE-GAVKRINMAHLCIAGSHAVNGVARIHSEILKKT-IFK-DFYE-LEPHKFQNKTN 473 (824)
T ss_dssp HHHHHHHHHSTTCHHHHHHHCSEEC-SSSCEEEHHHHHHHTCSCEEESSHHHHHHHHHT-TTH-HHHH-HCGGGEEECCC
T ss_pred HHHHHHHHHcCCcHHHHHhhhhhhh-cCCCcccHHHHHHHhcCceeeEcHHHHHHHhhH-HhH-HHHH-cChhhcccccC
Confidence 1000 0000011000 012357899999999999999999999998642 222 0000 12348999999
Q ss_pred CcccCCC----CCCCccccccc-----------------cCc-chhh----hccHHHHHH----HHHHhCCCCCCCccEE
Q 008488 356 GMDVQEW----NPLTDKYIGVK-----------------YDA-STVM----DAKPLLKEA----LQAEVGLPVDRNIPVI 405 (564)
Q Consensus 356 Gid~~~~----~p~~~~~~~~~-----------------~~~-~~~~----~~~~~~~~~----l~~~~gl~~~~~~~~i 405 (564)
|||...| +|..++.|... |.. ..+. +.|..+|.. ++++.|++.+++.+.+
T Consensus 474 GI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~ 553 (824)
T 2gj4_A 474 GITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFD 553 (824)
T ss_dssp CBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEE
T ss_pred CcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceE
Confidence 9999999 77776666644 654 3332 577778877 8999999999899999
Q ss_pred EEEeccccccCHHHH-HHHHHhcc---c-C-----CeEEEEEeCCChhhHH------HHHHHHHhC------CC--ceEE
Q 008488 406 GFIGRLEEQKGSDIL-AAAIPHFI---K-E-----NVQIIVLGTGKKPMEK------QLEQLEILY------PE--KARG 461 (564)
Q Consensus 406 ~~iGrl~~~KG~d~l-l~A~~~l~---~-~-----~v~lvIvG~g~~~~~~------~l~~L~~~~------~~--~v~~ 461 (564)
+++.|+.++||++++ +..+..+. + + ++++|+.|.+.+.++. .+.+++..+ ++ +|.+
T Consensus 554 g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvF 633 (824)
T 2gj4_A 554 VQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIF 633 (824)
T ss_dssp EEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEE
T ss_pred eeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEE
Confidence 999999999999998 88887774 2 2 6799999998854443 377777654 45 7999
Q ss_pred EeccChHHHHHHHHhcCEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCccccccccc--cCcceeEeecc
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSF 527 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~--~g~~G~l~~~~ 527 (564)
+..|+..+++.++++||++++||+ +|+||++.+-||.+|++.|++-.|...|+.+ ..+|||+||..
T Consensus 634 l~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~ 703 (824)
T 2gj4_A 634 LENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR 703 (824)
T ss_dssp ETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC
T ss_pred ECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc
Confidence 999999999999999999999999 8999999999999999999999999989875 35799999865
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.85 E-value=6.1e-21 Score=178.82 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=120.5
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCCh--hhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~--~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
+.++|+|+|++.+.||++.+++|+.++ ++++|+|+|.++. .+++.++++....++++.+.+..+.+++..+|+.||
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 457999999999999999999999998 6899999999873 456666644445667899999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
++|+||..|++|++++|||+||+|||+++.|++.|++.++.+|++ + +.|+++++++|.+
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~----------~-~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYL----------V-NADVNEIIDAMKK 158 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEE----------E-CSCHHHHHHHHHH
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEE----------e-CCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 7 8899999988754
No 29
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.85 E-value=9.1e-21 Score=174.80 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=114.8
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
+++|+|+||+.+.||++.+++|+..+.+ ++++|+|+|.|+ .++.++++..+++.++.+ +..+.+++..+|+.||++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~ 78 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP--DEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLY 78 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST--THHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc--cHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEE
Confidence 3689999999999999999999999965 699999999987 456677777666656776 777888999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCC-cEEE-cCccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGT-VPIV-ASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~-PvI~-s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|+||.+|+||++++|||+||+ |||+ ++.|+..|++.++.+ + +++.|+++++++|.+
T Consensus 79 v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~----------~~~~~~~~l~~~i~~ 136 (166)
T 3qhp_A 79 VHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--L----------FEPNNAKDLSAKIDW 136 (166)
T ss_dssp EECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--E----------ECTTCHHHHHHHHHH
T ss_pred EECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--E----------EcCCCHHHHHHHHHH
Confidence 999999999999999999998 9999 568999999988655 3 588999999988754
No 30
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.84 E-value=5.2e-20 Score=192.24 Aligned_cols=182 Identities=13% Similarity=0.044 Sum_probs=131.9
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (564)
...+|.++++|+..++.+.+ +|++.+ ++.+++|++ |...+.+ .+.++++
T Consensus 144 ~~~~~~~~~~s~~~~~~l~~---~g~~~~------ki~vi~n~~~d~~~~~~---------------------~~~~~~~ 193 (376)
T 1v4v_A 144 DVLTDLDFAPTPLAKANLLK---EGKREE------GILVTGQTGVDAVLLAA---------------------KLGRLPE 193 (376)
T ss_dssp HHHCSEEEESSHHHHHHHHT---TTCCGG------GEEECCCHHHHHHHHHH---------------------HHCCCCT
T ss_pred HHHhceeeCCCHHHHHHHHH---cCCCcc------eEEEECCchHHHHhhhh---------------------hhhHHHH
Confidence 45699999999999999986 576644 788999965 4211100 0001112
Q ss_pred HhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeccChHH
Q 008488 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 469 (564)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~ 469 (564)
++ + ++.++++++||+..+||++.+++|++++.+ ++++++++ |.++ ..++.++++... .+++.+.+.....+
T Consensus 194 ~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-~~~~~l~~~~~~-~~~v~~~g~~g~~~ 267 (376)
T 1v4v_A 194 GL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-VVREAVFPVLKG-VRNFVLLDPLEYGS 267 (376)
T ss_dssp TC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-HHHHHHHHHHTT-CTTEEEECCCCHHH
T ss_pred hc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-HHHHHHHHHhcc-CCCEEEECCCCHHH
Confidence 22 1 233577889999999999999999999865 68898886 6553 356666666433 24688887666667
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+..+|+.||++|.|| | |+ ++|||+||+|+|++ +.|+..|+++++ +|++ ++ .|+++|+++|.+
T Consensus 268 ~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~l----------v~-~d~~~la~~i~~ 330 (376)
T 1v4v_A 268 MAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKL----------AG-TDPEGVYRVVKG 330 (376)
T ss_dssp HHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEE----------CC-SCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEE----------CC-CCHHHHHHHHHH
Confidence 788999999999999 2 44 88999999999998 579999988654 8987 54 488888887643
No 31
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.81 E-value=1.4e-18 Score=182.59 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=132.7
Q ss_pred HHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHH
Q 008488 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (564)
Q Consensus 309 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
+++..++.+|.++++|+..++.+.+ +|++ ++.+++|+. |.+...+
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~---~g~~--------ki~vi~n~~----f~~~~~~-------------------- 190 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT---FGAK--------RVFSCGNLK----FICQKGK-------------------- 190 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT---TTCC--------SEEECCCGG----GCCCCCS--------------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCCC--------eEEEcCCCc----cCCCcCh--------------------
Confidence 5667788999999999999999986 5653 688999973 2221100
Q ss_pred HHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCC---------
Q 008488 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPE--------- 457 (564)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~--------- 457 (564)
++ .+ ..+++++.|+ ..||.+.+++|++++.+ ++++|+|+|+|+. ..+.++++..+.+-
T Consensus 191 --~~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-~~~~l~~~~~~~gl~~~~~~~~~ 259 (374)
T 2xci_A 191 --GI--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-NAKIFEKKARDFGFKTSFFENLE 259 (374)
T ss_dssp --CC--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-GHHHHHHHHHHTTCCEEETTCCC
T ss_pred --hh--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-HHHHHHHHHHHCCCceEEecCCC
Confidence 00 01 1256777665 46899999999999965 6899999998873 22345555555431
Q ss_pred -ceEEEeccChHHHHHHHHhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEc-CccccccccccC-cceeEeecccccccc
Q 008488 458 -KARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEG-FTGFQMGSFSVDVIY 533 (564)
Q Consensus 458 -~v~~~~~~~~~~~~~il~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g-~~G~l~~~~~~~~~~ 533 (564)
++.+ ..+ .+++..+|+.||++++||.+ |.+|++++|||+||+|||++ +.++..|++.+. .+|++
T Consensus 260 ~~v~~-~~~-~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l---------- 327 (374)
T 2xci_A 260 GDVIL-VDR-FGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAG---------- 327 (374)
T ss_dssp SSEEE-CCS-SSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCE----------
T ss_pred CcEEE-ECC-HHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCE----------
Confidence 2322 222 24566799999999998766 67899999999999999975 789999998763 57887
Q ss_pred CCCCCHHHHHhhccc
Q 008488 534 SSPSYNSRVIPRIPL 548 (564)
Q Consensus 534 v~~~d~~aLa~aI~~ 548 (564)
+++.|+++|+++|.+
T Consensus 328 ~~~~d~~~La~ai~~ 342 (374)
T 2xci_A 328 FEVKNETELVTKLTE 342 (374)
T ss_dssp EECCSHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 577899999988743
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.73 E-value=4.9e-16 Score=160.73 Aligned_cols=217 Identities=16% Similarity=0.089 Sum_probs=147.1
Q ss_pred CCCEEEEEcC-CCcchH-HHHHHhhccCCCCCCCCeEEEEEccCCcCccccccccccCCCCcccccccccccCCCCCccC
Q 008488 227 GEDVVFVAND-WHTSLI-PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (564)
Q Consensus 227 ~pDvIih~h~-~~~~~~-~~~l~~~~~~~~~~~~~kvv~tiH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (564)
++|+||+-+. |+.... ..+++...+ .++|+++++|++.... +. . . .
T Consensus 74 ~~DvIi~q~P~~~~~~~~~~~~~~lk~-----~~~k~i~~ihDl~pl~-~~----------~-------------~---~ 121 (339)
T 3rhz_A 74 HGDVVIFQTPTWNTTEFDEKLMNKLKL-----YDIKIVLFIHDVVPLM-FS----------G-------------N---F 121 (339)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHHHTT-----SSCEEEEEESCCHHHH-CG----------G-------------G---G
T ss_pred CCCEEEEeCCCcchhhHHHHHHHHHHh-----cCCEEEEEecccHHhh-Cc----------c-------------c---h
Confidence 5895544444 333322 334444321 3899999999765411 10 0 0 0
Q ss_pred chhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccH
Q 008488 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (564)
Q Consensus 305 ~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (564)
.....++..++.||.|+++|+.+++.+.+ +|++.. ++..+++. |.. .+..
T Consensus 122 ~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~---~G~~~~------ki~~~~~~-~~~--~~~~------------------ 171 (339)
T 3rhz_A 122 YLMDRTIAYYNKADVVVAPSQKMIDKLRD---FGMNVS------KTVVQGMW-DHP--TQAP------------------ 171 (339)
T ss_dssp GGHHHHHHHHTTCSEEEESCHHHHHHHHH---TTCCCS------EEEECCSC-CCC--CCCC------------------
T ss_pred hhHHHHHHHHHHCCEEEECCHHHHHHHHH---cCCCcC------ceeecCCC-Ccc--Cccc------------------
Confidence 12335778899999999999999999987 676533 45333321 211 0000
Q ss_pred HHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEec
Q 008488 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (564)
Q Consensus 385 ~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~ 464 (564)
+......++++|+|++..... +..+ .++++|+|+|+|+.. +.+ ++.+.+.
T Consensus 172 -----------~~~~~~~~~i~yaG~l~k~~~-------L~~l-~~~~~f~ivG~G~~~----------~l~-nV~f~G~ 221 (339)
T 3rhz_A 172 -----------MFPAGLKREIHFPGNPERFSF-------VKEW-KYDIPLKVYTWQNVE----------LPQ-NVHKINY 221 (339)
T ss_dssp -----------CCCCEEEEEEEECSCTTTCGG-------GGGC-CCSSCEEEEESCCCC----------CCT-TEEEEEC
T ss_pred -----------ccccCCCcEEEEeCCcchhhH-------HHhC-CCCCeEEEEeCCccc----------CcC-CEEEeCC
Confidence 001123478999999985332 2223 368999999999842 244 7999999
Q ss_pred cChHHHHHHHHhcCEEEEcCCC-------CCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCC
Q 008488 465 FNIPLAHMIIAGADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPS 537 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~-------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~ 537 (564)
++.++++.+++.+|+.+++... ..+|.+++||||||+|||+++.|++.|+++++.+|+.+ +
T Consensus 222 ~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~----------~-- 289 (339)
T 3rhz_A 222 RPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV----------K-- 289 (339)
T ss_dssp CCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE----------S--
T ss_pred CCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe----------C--
Confidence 9999999999999999886211 25699999999999999999999999999999999983 3
Q ss_pred CHHHHHhhcc
Q 008488 538 YNSRVIPRIP 547 (564)
Q Consensus 538 d~~aLa~aI~ 547 (564)
+.++++++|.
T Consensus 290 ~~~e~~~~i~ 299 (339)
T 3rhz_A 290 DVEEAIMKVK 299 (339)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4566666654
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.73 E-value=3.2e-16 Score=165.73 Aligned_cols=197 Identities=14% Similarity=0.046 Sum_probs=136.6
Q ss_pred HHHHH-HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHH
Q 008488 309 WMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (564)
Q Consensus 309 ~~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (564)
..+.. -..+|.++++|+..++.+.+ .|++.+ ++.++.|.+ |...+.+.. .+.....
T Consensus 158 ~~r~~~~~~a~~~~~~se~~~~~l~~---~G~~~~------ki~vvGn~~~d~~~~~~~~-------------~~~~~~~ 215 (396)
T 3dzc_A 158 GNRKLTAALTQYHFAPTDTSRANLLQ---ENYNAE------NIFVTGNTVIDALLAVREK-------------IHTDMDL 215 (396)
T ss_dssp HHHHHHHHTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHH-------------HHHCHHH
T ss_pred HHHHHHHHhcCEEECCCHHHHHHHHH---cCCCcC------cEEEECCcHHHHHHHhhhh-------------cccchhh
Confidence 34443 35789999999999999986 687755 788888854 422111100 0001112
Q ss_pred HHHHHHHhC-CCCCCCccEEEEEeccc-cccCHHHHHHHHHhccc--CCeEEEEE-eCCChhhHHHHHHHHHhCCCceEE
Q 008488 387 KEALQAEVG-LPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARG 461 (564)
Q Consensus 387 ~~~l~~~~g-l~~~~~~~~i~~iGrl~-~~KG~d~ll~A~~~l~~--~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~ 461 (564)
++++++++| ++.+ ...++++.+|.+ ..|+++.+++|+.++.+ +++++++. |.+ +..++.++++... ..++.+
T Consensus 216 ~~~~r~~lg~l~~~-~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~-~~~~~~l~~~~~~-~~~v~~ 292 (396)
T 3dzc_A 216 QATLESQFPMLDAS-KKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLN-PNVREPVNKLLKG-VSNIVL 292 (396)
T ss_dssp HHHHHHTCTTCCTT-SEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHTTT-CTTEEE
T ss_pred HHHHHHHhCccCCC-CCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCC-hHHHHHHHHHHcC-CCCEEE
Confidence 477889999 4433 223455566754 35789999999999865 78999886 544 3456666665322 246887
Q ss_pred EeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCcceeEeeccccccccCCCCCHH
Q 008488 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNS 540 (564)
Q Consensus 462 ~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~ 540 (564)
.......+...+|+.||++|.+| |.+++|||++|+|+|++ +.++..|++++| ++++ +++ |++
T Consensus 293 ~~~lg~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~l----------v~~-d~~ 355 (396)
T 3dzc_A 293 IEPQQYLPFVYLMDRAHIILTDS-----GGIQEEAPSLGKPVLVMRETTERPEAVAAG-TVKL----------VGT-NQQ 355 (396)
T ss_dssp ECCCCHHHHHHHHHHCSEEEESC-----SGGGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEE----------CTT-CHH
T ss_pred eCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHcCCCEEEccCCCcchHHHHcC-ceEE----------cCC-CHH
Confidence 77777666778999999999998 34449999999999999 788889999877 5676 443 788
Q ss_pred HHHhhcc
Q 008488 541 RVIPRIP 547 (564)
Q Consensus 541 aLa~aI~ 547 (564)
+|+++|.
T Consensus 356 ~l~~ai~ 362 (396)
T 3dzc_A 356 QICDALS 362 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.71 E-value=7.9e-16 Score=163.14 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=131.6
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCC-cccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NG-id~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
..+|.+++.++..++.+.+ .|++.+ ++.++.|. +|...+.+... . +.+.+++
T Consensus 168 ~~a~~~~~~se~~~~~l~~---~Gi~~~------~i~vvGn~~~D~~~~~~~~~--------------~----~~~~~~~ 220 (403)
T 3ot5_A 168 VMADIHFSPTKQAKENLLA---EGKDPA------TIFVTGNTAIDALKTTVQKD--------------Y----HHPILEN 220 (403)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHSCTT--------------C----CCHHHHS
T ss_pred HhcCEEECCCHHHHHHHHH---cCCCcc------cEEEeCCchHHHHHhhhhhh--------------c----chHHHHh
Confidence 3589999999999999987 687755 88888884 55433322110 0 1123334
Q ss_pred hCCCCCCCccEEEEEecccc-ccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHH
Q 008488 394 VGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~-~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~ 470 (564)
+ + + ...++++.||.+. .|+++.+++|+.++.+ +++++++.+...+..++.++++.... .++.+.+.....++
T Consensus 221 l--~-~-~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~ 295 (403)
T 3ot5_A 221 L--G-D-NRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDF 295 (403)
T ss_dssp C--T-T-CEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHH
T ss_pred c--c-C-CCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHH
Confidence 3 2 2 3345667788754 4789999999999865 78999987433334566666643222 46888887777788
Q ss_pred HHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCcceeEeeccccccccCCCCCHHHHHhhcc
Q 008488 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIP 547 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~ 547 (564)
..+|+.||++|.+| |.+.+|||++|+|+|++ +.|+..|+++.| +|++ +.+ |+++|++++.
T Consensus 296 ~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~l----------v~~-d~~~l~~ai~ 356 (403)
T 3ot5_A 296 HNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKL----------IGT-NKENLIKEAL 356 (403)
T ss_dssp HHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEE----------CCS-CHHHHHHHHH
T ss_pred HHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEE----------cCC-CHHHHHHHHH
Confidence 88999999999887 55669999999999999 778888998765 8887 454 7888877664
No 35
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.64 E-value=8.8e-16 Score=161.95 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=91.9
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
...++++.|++. .|+.+.+.++++.+.+.++++++++++.. ..+.++ ..+.++.+.+..+ ...+|+.||++
T Consensus 242 ~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~l~----~~~~~v~~~~~~~---~~~~l~~ad~~ 312 (412)
T 3otg_A 242 RPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL-DVSGLG----EVPANVRLESWVP---QAALLPHVDLV 312 (412)
T ss_dssp SCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC-CCTTCC----CCCTTEEEESCCC---HHHHGGGCSEE
T ss_pred CCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC-Chhhhc----cCCCcEEEeCCCC---HHHHHhcCcEE
Confidence 345778889986 78888888888877666788877765542 112222 2345688776663 45699999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
|.++ .+.+++|||++|+|+|+...+ +..+.+.++++|++ +++. |+++|+++|.+
T Consensus 313 v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~----------~~~~~~~~~~l~~ai~~ 372 (412)
T 3otg_A 313 VHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDH----------LLPDNISPDSVSGAAKR 372 (412)
T ss_dssp EESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEE----------CCGGGCCHHHHHHHHHH
T ss_pred EECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEe----------cCcccCCHHHHHHHHHH
Confidence 9764 348999999999999996554 47888888889998 5665 78888887753
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.49 E-value=1.2e-13 Score=145.30 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=77.6
Q ss_pred CccEEEEEecccccc----------CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHH
Q 008488 401 NIPVIGFIGRLEEQK----------GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (564)
Q Consensus 401 ~~~~i~~iGrl~~~K----------G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~ 470 (564)
..+++++.|++...| .++.+++++.++ ++++++++++.. .+.++ ..+.++.+.+..+ .
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~---~ 294 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---GFEVVVAVSDKL--AQTLQ----PLPEGVLAAGQFP---L 294 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG---TCEEEECCCC--------------CCTTEEEESCCC---H
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---CCEEEEEeCCcc--hhhhc----cCCCcEEEeCcCC---H
Confidence 346788899996544 467777777665 789999887652 22232 3456788777664 3
Q ss_pred HHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCcceeEeeccccccccCCCC--CHHHHHh
Q 008488 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIP 544 (564)
Q Consensus 471 ~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~ 544 (564)
..+++.||++|. ++.+.+++|||++|+|+|+ .+..+..+.+.+.++|++ +++. |+++|++
T Consensus 295 ~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~----------~~~~~~~~~~l~~ 360 (398)
T 4fzr_A 295 SAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVE----------VPWEQAGVESVLA 360 (398)
T ss_dssp HHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEE----------CC-------CHHH
T ss_pred HHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEe----------cCcccCCHHHHHH
Confidence 468999999995 4557899999999999999 556678888999999998 5555 5667776
Q ss_pred hcc
Q 008488 545 RIP 547 (564)
Q Consensus 545 aI~ 547 (564)
+|.
T Consensus 361 ai~ 363 (398)
T 4fzr_A 361 ACA 363 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.45 E-value=2.2e-12 Score=137.00 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=84.6
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhccc-CCeEE-EEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~l-vIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
..+++++.|++. .++.+.+.++++.+.+ +++++ +++|.+.. .+.++ ..++++.+.+..+.. .+|+.||
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--~~~l~----~~~~~v~~~~~~~~~---~~l~~ad 301 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--PAELG----ELPDNVEVHDWVPQL---AILRQAD 301 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---C--GGGGC----SCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--hHHhc----cCCCCeEEEecCCHH---HHhhccC
Confidence 346888999998 5666665555555544 47887 46787652 11221 245678877666654 5899999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 479 v~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
++|..+ -+.+++|||++|+|+|++..++ ..+.+.+.++|+. +++. |+++|+++|.+
T Consensus 302 ~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~----------~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 302 LFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARK----------LATEEATADLLRETALA 363 (430)
T ss_dssp EEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEE----------CCCC-CCHHHHHHHHHH
T ss_pred EEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEE----------cCCCCCCHHHHHHHHHH
Confidence 999854 2378999999999999998755 5677777788997 5555 77888877643
No 38
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.44 E-value=8e-12 Score=130.46 Aligned_cols=126 Identities=12% Similarity=0.034 Sum_probs=81.1
Q ss_pred cEEEEEeccccccCHHHHHHHHHhccc-CCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~-~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.++++.|++...+..+.+.++++.+.. .+++++++ |.+. .+...+.+ ...+.++...+..+ ++..+|+.||++
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~--~~~~~~~~-~~~~~~~~v~~f~~--dm~~~l~~aDlv 256 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQH--AEITAERY-RTVAVEADVAPFIS--DMAAAYAWADLV 256 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTT--HHHHHHHH-HHTTCCCEEESCCS--CHHHHHHHCSEE
T ss_pred EEEEECCcCCccccchhhHHHHHhcccccceEEEEecCccc--ccccccee-cccccccccccchh--hhhhhhccceEE
Confidence 456667889888889999999998865 45665543 4333 33333333 34444555444332 355699999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCcceeEeeccccccccCCCC--CHHHHHhhcc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIP 547 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~ 547 (564)
|.-+ -++++.|+|++|+|+|....... .+.+.+.+.|.+ ++.. +++.|+++|.
T Consensus 257 I~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~----------l~~~~~~~~~L~~~i~ 319 (365)
T 3s2u_A 257 ICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRL----------LPQKSTGAAELAAQLS 319 (365)
T ss_dssp EECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEE----------CCTTTCCHHHHHHHHH
T ss_pred EecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEE----------eecCCCCHHHHHHHHH
Confidence 9532 37889999999999998765432 234556667877 4433 4677777654
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.38 E-value=7.1e-12 Score=131.83 Aligned_cols=185 Identities=21% Similarity=0.165 Sum_probs=128.6
Q ss_pred HhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCc-ccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 315 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGi-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
..+|.+++.++..++.+.+ .|++.+ ++.++.|.+ |...+. .....+.+++++
T Consensus 145 ~~a~~~~~~te~~~~~l~~---~G~~~~------~I~vtGnp~~D~~~~~------------------~~~~~~~~~~~~ 197 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLIA---EGLPAE------LTFKSGSHMPEVLDRF------------------MPKILKSDILDK 197 (385)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCSHHHHHHHH------------------HHHHHHCCHHHH
T ss_pred hhhceeecCCHHHHHHHHH---cCCCcC------cEEEECCchHHHHHHh------------------hhhcchhHHHHH
Confidence 4689999999999999986 677655 788887743 321110 011235567889
Q ss_pred hCCCCCCCccEEEEEeccc---cccCHHHHHHHHHhcccC-CeEEEEEeCCChhhHHHHHHH-H-HhCCCceEEEeccCh
Q 008488 394 VGLPVDRNIPVIGFIGRLE---EQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQL-E-ILYPEKARGVAKFNI 467 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~---~~KG~d~ll~A~~~l~~~-~v~lvIvG~g~~~~~~~l~~L-~-~~~~~~v~~~~~~~~ 467 (564)
+|++. +..++++.||.+ ..|+++.+++|+.++.+. ++++++... +..++.++++ . .....++.+...+..
T Consensus 198 lgl~~--~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~--p~~~~~l~~~~~~~~~~~~v~l~~~lg~ 273 (385)
T 4hwg_A 198 LSLTP--KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH--PRTKKRLEDLEGFKELGDKIRFLPAFSF 273 (385)
T ss_dssp TTCCT--TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC--HHHHHHHHTSGGGGGTGGGEEECCCCCH
T ss_pred cCCCc--CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC--hHHHHHHHHHHHHhcCCCCEEEEcCCCH
Confidence 99964 235666777754 347899999999988643 677777543 3456666654 2 111246877777776
Q ss_pred HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc-cccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
.+...+++.||+++.+| |.++.||+++|+|+|+.+... .+|.++.| ++++ +. .|.+++++++
T Consensus 274 ~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~l----------v~-~d~~~i~~ai 336 (385)
T 4hwg_A 274 TDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIM----------SG-FKAERVLQAV 336 (385)
T ss_dssp HHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEE----------CC-SSHHHHHHHH
T ss_pred HHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEE----------cC-CCHHHHHHHH
Confidence 67778999999999776 567899999999999986543 67887765 6776 43 3777777765
Q ss_pred c
Q 008488 547 P 547 (564)
Q Consensus 547 ~ 547 (564)
.
T Consensus 337 ~ 337 (385)
T 4hwg_A 337 K 337 (385)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.38 E-value=5.1e-12 Score=132.91 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred CccEEEEEeccccc-cCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 401 NIPVIGFIGRLEEQ-KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 401 ~~~~i~~iGrl~~~-KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
..+++++.|++... ++.+.+.++++.+.+.++++++++++.. .+.++ ..+.++.+.+..+. ..+++.||+
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~~---~~ll~~ad~ 302 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD--ISPLG----TLPRNVRAVGWTPL---HTLLRTCTA 302 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC--CGGGC----SCCTTEEEESSCCH---HHHHTTCSE
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC--hhhhc----cCCCcEEEEccCCH---HHHHhhCCE
Confidence 34678889999655 4555555555555444889999987752 11121 34567887776643 358999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccc--cccccCcceeEeeccccccccCCCC--CHHHHH
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLV--DTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVI 543 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~--e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa 543 (564)
+|. .+-+.+++|||++|+|+|+ .+..+.. +.+.+.++|+. +++. ++++|+
T Consensus 303 ~v~----~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~----------~~~~~~~~~~l~ 360 (398)
T 3oti_A 303 VVH----HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLV----------STSDKVDADLLR 360 (398)
T ss_dssp EEE----CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEE----------CCGGGCCHHHHH
T ss_pred EEE----CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEe----------eCCCCCCHHHHH
Confidence 995 4556799999999999999 6778888 99999999998 4444 566666
No 41
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.38 E-value=1.2e-12 Score=137.17 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred ccEEEEEeccccccCH-HHHHHHHHhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 402 IPVIGFIGRLEEQKGS-DILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~-d~ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
..++++.|++...|+. ..+++++.+..+ ++++++++|++.. .+.++ ..+.++.+.+..+.. .+++.||+
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ad~ 289 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH--RALLT----DLPDNARIAESVPLN---LFLRTCEL 289 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG--GGGCT----TCCTTEEECCSCCGG---GTGGGCSE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc--hhhcc----cCCCCEEEeccCCHH---HHHhhCCE
Confidence 4567778999765433 555554444433 5899999987652 12221 234568777665543 36799999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCcceeEeeccccccccCCC----CCHHHHHhhcc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLVDTVEEGFTGFQMGSFSVDVIYSSP----SYNSRVIPRIP 547 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~----~d~~aLa~aI~ 547 (564)
+|. ++.+.+++|||++|+|+|+ .+..+..+.+.+.+.|++ +++ .|+++|+++|.
T Consensus 290 ~v~----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~----------~~~~~~~~~~~~l~~ai~ 351 (391)
T 3tsa_A 290 VIC----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGIC----------LPDEQAQSDHEQFTDSIA 351 (391)
T ss_dssp EEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEE----------CCSHHHHTCHHHHHHHHH
T ss_pred EEe----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEe----------cCcccccCCHHHHHHHHH
Confidence 995 4555799999999999999 555667888888899998 566 57788877764
No 42
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.31 E-value=7.8e-11 Score=123.22 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=81.3
Q ss_pred CccEEEEEecccccc--CHHHHHHHHHhcccCCeEEEE-EeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 401 ~~~~i~~iGrl~~~K--G~d~ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
...++++.|+....+ .+..+++++..+ ++++++ +|.+.. .+.++ ..+.++.+.+..+.. .+++.|
T Consensus 231 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~--~~~~~----~~~~~v~~~~~~~~~---~ll~~a 298 (402)
T 3ia7_A 231 APVLLVSLGNQFNEHPEFFRACAQAFADT---PWHVVMAIGGFLD--PAVLG----PLPPNVEAHQWIPFH---SVLAHA 298 (402)
T ss_dssp CCEEEEECCSCSSCCHHHHHHHHHHHTTS---SCEEEEECCTTSC--GGGGC----SCCTTEEEESCCCHH---HHHTTE
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHhcC---CcEEEEEeCCcCC--hhhhC----CCCCcEEEecCCCHH---HHHhhC
Confidence 346778889987655 345555555444 567666 565431 11121 245578776655554 699999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEc-----CccccccccccCcceeEeeccccccccCCCC--CHHHHHhhcc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVA-----STGGLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIP 547 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s-----~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~ 547 (564)
|++|..+- ..+++|||++|+|+|+. +..+..+.+.+.+.|.. ++++ ++++|++++.
T Consensus 299 d~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~----------~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 299 RACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV----------LRPDQLEPASIREAVE 361 (402)
T ss_dssp EEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEE----------CCGGGCSHHHHHHHHH
T ss_pred CEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEE----------ccCCCCCHHHHHHHHH
Confidence 99997532 37889999999999954 44577888888889987 4554 6777877664
No 43
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.25 E-value=2.3e-10 Score=119.39 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccEEEEEeccccc-------cCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH
Q 008488 402 IPVIGFIGRLEEQ-------KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (564)
Q Consensus 402 ~~~i~~iGrl~~~-------KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il 474 (564)
..++++.|++... +.++.+++++.++ +++++++++++ ..+.++. .++++.+ +..+. .++|
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~--~~~~l~~----~~~~v~~-~~~~~---~~~l 277 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDT--VAEALRA----EVPQARV-GWTPL---DVVA 277 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHH--HHHHHHH----HCTTSEE-ECCCH---HHHG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCC--CHHhhCC----CCCceEE-cCCCH---HHHH
Confidence 4578899999865 6788888888765 78888876532 2222322 3456776 55553 3578
Q ss_pred HhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCCC--CHHHHHhhcc
Q 008488 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIP 547 (564)
Q Consensus 475 ~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~ 547 (564)
+.||++|.. +.+.+++|||++|+|+|+...++ +.+.+.+.+.|+. +++. ++++|+++|.
T Consensus 278 ~~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~----------~~~~~~~~~~l~~~i~ 342 (384)
T 2p6p_A 278 PTCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIA----------LLPGEDSTEAIADSCQ 342 (384)
T ss_dssp GGCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEE----------CCTTCCCHHHHHHHHH
T ss_pred hhCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEe----------cCcCCCCHHHHHHHHH
Confidence 999999985 34568999999999999997644 7777777788987 4443 6778877664
No 44
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.21 E-value=2.5e-10 Score=120.38 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=80.6
Q ss_pred CccEEEEEecccccc--CHHHHHHHHHhcccCCeEEEE-EeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 401 ~~~~i~~iGrl~~~K--G~d~ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
...++++.|+..... .+..+++++..+ ++++++ +|.+.. .+.++ ..+.++.+.+..+.. .+++.|
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~a 314 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQ---PWHVVMTLGGQVD--PAALG----DLPPNVEAHRWVPHV---KVLEQA 314 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTS---SCEEEEECTTTSC--GGGGC----CCCTTEEEESCCCHH---HHHHHE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcC---CcEEEEEeCCCCC--hHHhc----CCCCcEEEEecCCHH---HHHhhC
Confidence 346778889985443 245555555544 578777 565531 11121 245578877655544 589999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCcceeEeeccccccccCCCC--CHHHHHhhcc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIP 547 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~ 547 (564)
|++|..+ -..+++|||++|+|+|+ .+.....+.+.+.+.|.. +++. ++++|+++|.
T Consensus 315 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~----------~~~~~~~~~~l~~~i~ 376 (415)
T 3rsc_A 315 TVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAV----------LPGEKADGDTLLAAVG 376 (415)
T ss_dssp EEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEE----------CCGGGCCHHHHHHHHH
T ss_pred CEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEE----------cccCCCCHHHHHHHHH
Confidence 9999753 23688999999999999 455567788888888887 4544 6777777664
No 45
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=99.07 E-value=5.8e-09 Score=116.07 Aligned_cols=220 Identities=18% Similarity=0.153 Sum_probs=157.1
Q ss_pred hhHHHHHHHHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccc--------cc------
Q 008488 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKY--------IG------ 371 (564)
Q Consensus 306 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~--------~~------ 371 (564)
..++...++..|..|.-||+-..+.+++.-...+ ..+.+..++.-+.|||.+..|--...+. |.
T Consensus 467 ~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f~df--~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W 544 (879)
T 1ygp_A 467 QIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDF--IKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEY 544 (879)
T ss_dssp EEEHHHHHHHHEEEEEESSHHHHHHHHHTTTHHH--HHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTTCGG
T ss_pred eeehHHHHHHhcCceeEehHHHHHHHHHHHhHHH--HHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcCCChhhh
Confidence 4677788899999999999877776644211000 0111122788999999887774211111 11
Q ss_pred --ccc---------Cc----chhhhccHHHHHH----HHHHh-CCCCC-----CCccEEEEEeccccccCHHH-HHHHHH
Q 008488 372 --VKY---------DA----STVMDAKPLLKEA----LQAEV-GLPVD-----RNIPVIGFIGRLEEQKGSDI-LAAAIP 425 (564)
Q Consensus 372 --~~~---------~~----~~~~~~~~~~~~~----l~~~~-gl~~~-----~~~~~i~~iGrl~~~KG~d~-ll~A~~ 425 (564)
... +. ..+.+.|..+|.. ++++. |...+ ++...++++-|+.++|+..+ ++..+.
T Consensus 545 ~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ 624 (879)
T 1ygp_A 545 LLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIY 624 (879)
T ss_dssp GTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred hhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHH
Confidence 000 11 1123455555554 45667 88877 77889999999999999999 666655
Q ss_pred hccc------------------CCeEEEEEeCCC------hhhHHHHHHHHH------hCCC--ceEEEeccChHHHHHH
Q 008488 426 HFIK------------------ENVQIIVLGTGK------KPMEKQLEQLEI------LYPE--KARGVAKFNIPLAHMI 473 (564)
Q Consensus 426 ~l~~------------------~~v~lvIvG~g~------~~~~~~l~~L~~------~~~~--~v~~~~~~~~~~~~~i 473 (564)
.+.+ .++++|+.|... +.+.+.+.+++. ...+ +|.|+..|+...+..+
T Consensus 625 ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~i 704 (879)
T 1ygp_A 625 RYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEII 704 (879)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHh
Confidence 4421 368899999765 244555555554 1234 7999999999999999
Q ss_pred HHhcCEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCcccccccccc--CcceeEeecc
Q 008488 474 IAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSF 527 (564)
Q Consensus 474 l~~ADv~v~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~l~~~~ 527 (564)
+.+||+....|+. |++|++-+-+|..|.+.|+|-.|+..|+.++ .+|+|+||.-
T Consensus 705 ipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiFG~~ 762 (879)
T 1ygp_A 705 IPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNL 762 (879)
T ss_dssp GGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEESCC
T ss_pred hhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEccCC
Confidence 9999999999985 9999999999999999999999999999876 5699999954
No 46
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.85 E-value=2e-08 Score=106.99 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=83.5
Q ss_pred ccEEEEEecccc-----ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh
Q 008488 402 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (564)
Q Consensus 402 ~~~i~~iGrl~~-----~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ 476 (564)
..++++.|++.. .|.++.+++++..+ ++++++++++.. . +++. ..+.++...+..+.. .+|..
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~-~----~~l~-~~~~~v~~~~~~~~~---~ll~~ 335 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ-L----EGVA-NIPDNVRTVGFVPMH---ALLPT 335 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT-T----SSCS-SCCSSEEECCSCCHH---HHGGG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc-h----hhhc-cCCCCEEEecCCCHH---HHHhh
Confidence 357888999875 48899999999876 788888766542 1 1111 245578766665643 47899
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
||++|.. +-+.+++|||++|+|+|+.... .+.+.+.+.+.|+. +++. ++++|+++|.+
T Consensus 336 ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~----------~~~~~~~~~~l~~~i~~ 399 (441)
T 2yjn_A 336 CAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIA----------LPVPELTPDQLRESVKR 399 (441)
T ss_dssp CSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEE----------CCTTTCCHHHHHHHHHH
T ss_pred CCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEE----------cccccCCHHHHHHHHHH
Confidence 9999973 4457899999999999999774 36777777788987 4443 67777776643
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.85 E-value=1.2e-07 Score=99.98 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=82.8
Q ss_pred CccEEEEEeccc-cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 401 NIPVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 401 ~~~~i~~iGrl~-~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
..+++++.|++. ..+..+.+++++..+ ++++++.++... .+ . ...+.++......+.. .++..||+
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~-~~-~-----~~~~~~v~~~~~~~~~---~ll~~~d~ 287 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAG-LG-R-----IDEGDDCLVVGEVNHQ---VLFGRVAA 287 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTT-CC-C-----SSCCTTEEEESSCCHH---HHGGGSSE
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcc-cc-c-----ccCCCCEEEecCCCHH---HHHhhCcE
Confidence 346788889998 777788888888876 677777654331 10 0 0224568777665543 47899999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCC--CCHHHHHhhcccC
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSP--SYNSRVIPRIPLD 549 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~--~d~~aLa~aI~~~ 549 (564)
+|.. +-..++.||+++|+|+|+...++ +.+.+.+.+.|.. +++ .+.+.|+++|.+-
T Consensus 288 ~v~~----gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~----------l~~~~~~~~~l~~ai~~l 349 (404)
T 3h4t_A 288 VVHH----GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVA----------HDGPTPTVESLSAALATA 349 (404)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEE----------CSSSSCCHHHHHHHHHHH
T ss_pred EEEC----CcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEec----------cCcCCCCHHHHHHHHHHH
Confidence 9963 22378999999999999986543 3445666677887 333 2677777776543
No 48
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.77 E-value=4.8e-07 Score=95.49 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=78.6
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
...++++.|+.. .+..+.+.++++.+.+.+++++ ++|.+... +.++ ..+.++......+.. .+|+.||+
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~--~~~~----~~~~~v~~~~~~~~~---~~l~~~d~ 324 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP--ADLG----EVPPNVEVHQWVPQL---DILTKASA 324 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--GGGC----SCCTTEEEESSCCHH---HHHTTCSE
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCCh--HHhc----cCCCCeEEecCCCHH---HHHhhCCE
Confidence 345778889987 3344444444444433467875 46765421 1111 245668766655544 58999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCC--CHHHHHhhcc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIP 547 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~ 547 (564)
+|.. +-..+++|||++|+|+|+.... .+.+.+.+.+.|+. +++. +.++|+++|.
T Consensus 325 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~----------~~~~~~~~~~l~~~i~ 384 (424)
T 2iya_A 325 FITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRH----------IPRDQVTAEKLREAVL 384 (424)
T ss_dssp EEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEE----------CCGGGCCHHHHHHHHH
T ss_pred EEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEE----------cCcCCCCHHHHHHHHH
Confidence 9863 2237899999999999999764 34566667778887 3433 6677776654
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.75 E-value=2.3e-07 Score=96.82 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=70.5
Q ss_pred ccEEEEEecccccc-CHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 402 IPVIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 402 ~~~i~~iGrl~~~K-G~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.++++..|++...+ +.+.+.++++.+.+.+.++++.+.+... . .....+.++......+.. .++..+|++
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~-~-----~~~~~~~~v~~~~~~p~~---~lL~~~~~~ 308 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL-A-----LLGELPANVRVVEWIPLG---ALLETCDAI 308 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC-C-----CCCCCCTTEEEECCCCHH---HHHTTCSEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc-c-----ccccCCCCEEEEeecCHH---HHhhhhhhe
Confidence 35667788876544 3455555566665557777776654310 0 011245667766666643 478999998
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccCcceeEe
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVAST----GGLVDTVEEGFTGFQM 524 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s~~----gg~~e~v~~g~~G~l~ 524 (564)
|. .+-..+++|||++|+|+|+... ..+.+.+.+.+.|...
T Consensus 309 v~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l 352 (400)
T 4amg_A 309 IH----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352 (400)
T ss_dssp EE----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEEC
T ss_pred ec----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEc
Confidence 85 3445689999999999998644 3466667776778763
No 50
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.59 E-value=9.8e-08 Score=87.76 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=88.8
Q ss_pred ccEEEEEeccc---cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH--Hh
Q 008488 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AG 476 (564)
Q Consensus 402 ~~~i~~iGrl~---~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il--~~ 476 (564)
..++++.|++. +.|+++.+++++.++ ++++++++++... ...+.++.+.+..+... ++ +.
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~---------~~~~~~v~~~~~~~~~~---~l~~~~ 86 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP---------DTLGLNTRLYKWIPQND---LLGHPK 86 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC---------TTCCTTEEEESSCCHHH---HHTSTT
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc---------ccCCCcEEEecCCCHHH---HhcCCC
Confidence 46888999985 778889999998766 5788887765521 12355788777666643 45 89
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCC--CHHHHHhhccc
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPS--YNSRVIPRIPL 548 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~--d~~aLa~aI~~ 548 (564)
||++|.. +-+.+++|||++|+|+|+.... +..+.+.+.+.|+. +++. ++++|+++|.+
T Consensus 87 ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~----------~~~~~~~~~~l~~~i~~ 150 (170)
T 2o6l_A 87 TRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVR----------VDFNTMSSTDLLNALKR 150 (170)
T ss_dssp EEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEE----------CCTTTCCHHHHHHHHHH
T ss_pred cCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEE----------eccccCCHHHHHHHHHH
Confidence 9999974 4569999999999999999764 45777888889997 5555 77888887753
No 51
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.49 E-value=2.8e-06 Score=93.03 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=81.3
Q ss_pred HHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEE--EEeCCC---hhhHHHHHHHHHhCCCceEEEec
Q 008488 392 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQII--VLGTGK---KPMEKQLEQLEILYPEKARGVAK 464 (564)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lv--IvG~g~---~~~~~~l~~L~~~~~~~v~~~~~ 464 (564)
..+|++.+.+.++++...+ ..|..+.+++++.++.+ ++..++ ++|.+. ....+.+.++... +++.+.+.
T Consensus 431 ~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~--~Rv~F~g~ 506 (631)
T 3q3e_A 431 VDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLG--DSATAHPH 506 (631)
T ss_dssp CCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHG--GGEEEECC
T ss_pred ccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCC--ccEEEcCC
Confidence 3456665433566677776 47999999999998876 665543 367432 2233344444433 46888888
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
.+.++....++.+|+++-|+.+.+ |++.+|||+||+|||+...
T Consensus 507 ~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G 549 (631)
T 3q3e_A 507 SPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTG 549 (631)
T ss_dssp CCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECC
T ss_pred CCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccC
Confidence 888887789999999999998755 9999999999999999543
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.47 E-value=1.5e-05 Score=83.75 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=82.6
Q ss_pred ccEEEEEeccc---cccCHHHHHHHHHhcccCCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhc
Q 008488 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (564)
Q Consensus 402 ~~~i~~iGrl~---~~KG~d~ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~A 477 (564)
..++++.|++. ..+..+.++++++.+ +++++++ |.+... . ...+.++......+. ..++..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~---~~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELV----L----PDDRDDCFAIDEVNF---QALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCC----C----SCCCTTEEEESSCCH---HHHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCcccc----c----cCCCCCEEEeccCCh---HHHhccC
Confidence 45788889984 577788888888876 5677665 655421 1 234556776666564 3478999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|++|. .+-..+++||+++|+|+|+.... ...+.+.+.+.|..+. .+..+.++++++|.+
T Consensus 304 d~~v~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~--------~~~~~~~~l~~~i~~ 366 (416)
T 1rrv_A 304 AAVIH----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD--------GPTPTFESLSAALTT 366 (416)
T ss_dssp SEEEE----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS--------SSCCCHHHHHHHHHH
T ss_pred CEEEe----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC--------CCCCCHHHHHHHHHH
Confidence 99997 23346999999999999997653 3556677777888732 112356777776644
No 53
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.53 E-value=9.2e-05 Score=77.79 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=82.5
Q ss_pred ccEEEEEecc-ccccCHHHHHHHHHhcccCCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCE
Q 008488 402 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (564)
Q Consensus 402 ~~~i~~iGrl-~~~KG~d~ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv 479 (564)
..++++.|++ ...+..+.++++++.+ +.+++++ |.+... . ...+.++......+.. .+++.||+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~~---~~l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLV----L----PDDGADCFAIGEVNHQ---VLFGRVAA 304 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCC----C----SSCGGGEEECSSCCHH---HHGGGSSE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCccc----c----cCCCCCEEEeCcCChH---HHHhhCCE
Confidence 4688889999 5888999999999887 4566665 655421 1 1234567766666653 36799999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCcceeEeeccccccccCCC--CCHHHHHhhccc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSP--SYNSRVIPRIPL 548 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~--~d~~aLa~aI~~ 548 (564)
+|.. +-..+++|||++|+|+|+....+ ..+.+++.+.|+.+ ++ .+.++++++|.+
T Consensus 305 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 305 VIHH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAH----------DGPIPTFDSLSAALAT 365 (415)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHH
T ss_pred EEeC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccC----------CcCCCCHHHHHHHHHH
Confidence 9974 22369999999999999986644 66667777788873 33 266777776654
No 54
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.23 E-value=0.035 Score=56.81 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=74.0
Q ss_pred HHHHHhCCCCCCCccEEEEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCce-EEEecc
Q 008488 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKA-RGVAKF 465 (564)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v-~~~~~~ 465 (564)
++.++.|++.+. ..+.+..|.=.+.|. .+.+.++++.+.+.+++++++|+.. -++..+++....+.++ ...+..
T Consensus 174 ~~l~~~g~~~~~-~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~--e~~~~~~i~~~~~~~~~~l~g~~ 250 (349)
T 3tov_A 174 EFYSSHGLTDTD-ILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPM--DLEMVQPVVEQMETKPIVATGKF 250 (349)
T ss_dssp HHHHHTTCCTTC-CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTT--THHHHHHHHHTCSSCCEECTTCC
T ss_pred HHHHHcCCCCCC-CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcc--hHHHHHHHHHhcccccEEeeCCC
Confidence 345667775432 234455665445665 4678888888866678899888654 3455666666554333 334456
Q ss_pred ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+-.++..+++.||++|.. -.|..-+ |.++|+|+|+-=
T Consensus 251 sl~e~~ali~~a~~~i~~----DsG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITN----DSGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CHHHHHHHHHTCSEEEEE----SSHHHHH-HHTTTCCEEEEC
T ss_pred CHHHHHHHHHhCCEEEEC----CCCHHHH-HHhcCCCEEEEE
Confidence 777788899999999975 2455555 899999999863
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.55 E-value=0.0098 Score=60.36 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCCCCCccEEEEEec-cccccCH--HHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCC----Cc
Q 008488 386 LKEALQAEVGLPVDRNIPVIGFIGR-LEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP----EK 458 (564)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGr-l~~~KG~--d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~----~~ 458 (564)
..+++++.+|++.+ ...+++..|. ..+.|.+ +.+.++++.|.+.+++++++|...+ ++..+++....+ .+
T Consensus 166 ~~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e--~~~~~~i~~~~~~~~~~~ 242 (348)
T 1psw_A 166 EKSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKD--HEAGNEILAALNTEQQAW 242 (348)
T ss_dssp HHHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGG--HHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhh--HHHHHHHHHhhhhccccc
Confidence 35567778887533 2245556666 5566664 4888888888666899999886542 445555554432 23
Q ss_pred eEE-EeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 459 ARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 459 v~~-~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+.. .+..+-.+...+++.||++|... .|..-+ |.++|+|+|+--
T Consensus 243 ~~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 243 CRNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_dssp EEECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred eEeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 433 34456677778999999999864 344444 899999999863
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.16 E-value=0.027 Score=63.58 Aligned_cols=111 Identities=14% Similarity=-0.010 Sum_probs=81.5
Q ss_pred HHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC---CceEEEecc
Q 008488 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAKF 465 (564)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~L~~~~~---~~v~~~~~~ 465 (564)
|+.+|||.+. |+|..-=...|=.+.+++++.++.+ ++-.|++..... ..++.+++...+.+ +++.+....
T Consensus 514 R~~~gLp~~~----v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~-~~~~~l~~~~~~~gi~~~r~~f~~~~ 588 (723)
T 4gyw_A 514 RSQYGLPEDA----IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA-VGEPNIQQYAQNMGLPQNRIIFSPVA 588 (723)
T ss_dssp GGGGTCCTTS----EEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG-GGHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hhhcCCCCCC----EEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH-HHHHHHHHHHHhcCCCcCeEEECCCC
Confidence 6778998653 4443333457777777777777666 899998887654 24555666655544 578888888
Q ss_pred ChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 466 ~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+.++....+..+|+++=|..+ +-+++.+||+.+|+|||+-.
T Consensus 589 ~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~ 629 (723)
T 4gyw_A 589 PKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMP 629 (723)
T ss_dssp CHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCC
T ss_pred CHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEcc
Confidence 877777789999999987666 55899999999999999865
No 57
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.11 E-value=0.022 Score=56.54 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=61.4
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
.++++.|..+...-.+.+++++... .+ -.||.|.+.+ ..+.+++...+.+ ++..+. |. +.+..+|+.||++|.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~--~~-i~vv~G~~~~-~~~~l~~~~~~~~-~v~v~~-~~-~~m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT--KI-ISIATSSSNP-NLKKLQKFAKLHN-NIRLFI-DH-ENIAKLMNESNKLII 231 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT--SC-EEEEECTTCT-THHHHHHHHHTCS-SEEEEE-SC-SCHHHHHHTEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC--CC-EEEEECCCch-HHHHHHHHHhhCC-CEEEEe-CH-HHHHHHHHHCCEEEE
Confidence 4667788776554344555555443 23 3466788765 3455555555444 566554 33 335569999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcC
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVAS 507 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~ 507 (564)
+ .|.++.|++++|+|.|.-.
T Consensus 232 ~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 232 S-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp E-----SSHHHHHHHHTTCCEEEEC
T ss_pred C-----CcHHHHHHHHcCCCEEEEe
Confidence 3 4689999999999998864
No 58
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=91.09 E-value=2.4 Score=47.44 Aligned_cols=197 Identities=12% Similarity=0.107 Sum_probs=107.8
Q ss_pred HHhcceeccCCHHHHHHHHcCccCCCcchhhhhccceEEecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH
Q 008488 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (564)
Q Consensus 314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (564)
....|.+++.|+...+.+.+ .++++.. .++.-|.. ..|.+.. .......++.++++
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~--~f~~~~~--------~i~~~G~P------R~D~l~~--------~~~~~~~~~~~~~~ 531 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRS--AFWMDEE--------RILEIGYP------RNDVLVN--------RANDQEYLDEIRTH 531 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHH--HTCCCGG--------GEEESCCG------GGHHHHH--------STTCHHHHHHHHHH
T ss_pred hccCCEEEeCCHHHHHHHHH--HhCCCcc--------eEEEcCCC------chHHHhc--------ccchHHHHHHHHHH
Confidence 45689999999999998877 4555432 23334432 1111000 01123446788999
Q ss_pred hCCCCCCCccEEEEEeccccc----cC-----HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEec
Q 008488 394 VGLPVDRNIPVIGFIGRLEEQ----KG-----SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (564)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~----KG-----~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~ 464 (564)
+|++. ++++|+|.-.+... +| ...-++.+.+...+++.+++-. ++...+.+. + ..+.+.+.....
T Consensus 532 ~~~~~--~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~--Hp~~~~~~~-~-~~~~~~~~~~~~ 605 (729)
T 3l7i_A 532 LNLPS--DKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRM--HYLISNALD-L-SGYENFAIDVSN 605 (729)
T ss_dssp TTCCS--SCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECC--CHHHHTTCC-C-TTCTTTEEECTT
T ss_pred hCCCC--CCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEec--Ccchhcccc-c-cccCCcEEeCCC
Confidence 99975 45899999877653 11 1112333333333566666633 332221110 0 122333443333
Q ss_pred cChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCcceeEeeccccccccCCCCCHHHHHh
Q 008488 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIP 544 (564)
Q Consensus 465 ~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~ 544 (564)
+ +.+.+++..||++|. -++-++.|++..++|+|-..- ...+- .+...|+.++ +....--.-..|.++|.+
T Consensus 606 ~--~di~~ll~~aD~lIT-----DySSv~fD~~~l~kPiif~~~-D~~~Y-~~~~rg~y~d-~~~~~pg~~~~~~~eL~~ 675 (729)
T 3l7i_A 606 Y--NDVSELFLISDCLIT-----DYSSVMFDYGILKRPQFFFAY-DIDKY-DKGLRGFYMN-YMEDLPGPIYTEPYGLAK 675 (729)
T ss_dssp C--SCHHHHHHTCSEEEE-----SSCTHHHHHGGGCCCEEEECT-TTTTT-TSSCCSBSSC-TTSSSSSCEESSHHHHHH
T ss_pred C--cCHHHHHHHhCEEEe-----echHHHHhHHhhCCCEEEecC-CHHHH-hhccCCcccC-hhHhCCCCeECCHHHHHH
Confidence 3 345578999999995 577889999999999997732 12222 2223566543 111100011247788888
Q ss_pred hcccCC
Q 008488 545 RIPLDS 550 (564)
Q Consensus 545 aI~~~~ 550 (564)
+|....
T Consensus 676 ~i~~~~ 681 (729)
T 3l7i_A 676 ELKNLD 681 (729)
T ss_dssp HHTTHH
T ss_pred HHhhhh
Confidence 887543
No 59
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=89.68 E-value=1.9 Score=42.83 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=66.0
Q ss_pred cEEEEEeccccccC--HHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEE
Q 008488 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~ 480 (564)
.+.+..|.=.+.|. .+.+.+.++.+.+.+++++++++++. -++..+++....++ +...+..+-.+...+++.||++
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-EEERAKRLAEGFAY-VEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-HHHHHHHHHTTCTT-EEECCCCCHHHHHHHHHTCSEE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-HHHHHHHHHhhCCc-ccccCCCCHHHHHHHHHhCCEE
Confidence 34455565455565 55888888888767889888743432 23445566555443 5555666777788899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
|.. -.|..=+ |.+.|+|+|+-
T Consensus 258 I~~----DSG~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 258 VSV----DTGLSHL-TAALDRPNITV 278 (326)
T ss_dssp EEE----SSHHHHH-HHHTTCCEEEE
T ss_pred Eec----CCcHHHH-HHHcCCCEEEE
Confidence 975 2455555 67799999976
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=87.92 E-value=1.6 Score=46.05 Aligned_cols=115 Identities=17% Similarity=-0.016 Sum_probs=63.1
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEE
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v 481 (564)
..+++..|..... ..+.+.+.+..+.+.+.+++++-.... .+..-+.+.++.++++......+.. .+++.+++-+
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq~---~vL~h~~v~~ 348 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQV---EILKHSSVGV 348 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECCSCH-HHHSCTTHHHHTTTTEEEESSCCHH---HHHHSTTEEE
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCHH---HHHhhcCcCe
Confidence 3466667776532 233333333333333666666533321 1111112223344567666544542 5899999444
Q ss_pred EcCCCCCCc-HHHHHHHHcCCcEEEcCccc----cccccccC-cceeEe
Q 008488 482 IPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQM 524 (564)
Q Consensus 482 ~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~l~ 524 (564)
+-+. || .+++||+++|+|+|+--..+ ....+.+. +.|..+
T Consensus 349 fvtH---~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l 394 (454)
T 3hbf_A 349 FLTH---SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394 (454)
T ss_dssp EEEC---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEEC
T ss_pred EEec---CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEe
Confidence 3333 44 57999999999999975432 44455554 678764
No 61
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=87.24 E-value=0.74 Score=43.87 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHHHH-hcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc
Q 008488 468 PLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (564)
Q Consensus 468 ~~~~~il~-~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (564)
+.+..+|+ .||++|.= +-..+++|++++|+|.|.-..
T Consensus 123 ~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~ 160 (224)
T 2jzc_A 123 TKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVN 160 (224)
T ss_dssp SSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECC
T ss_pred chHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcC
Confidence 34556899 99999952 456789999999999887654
No 62
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=86.26 E-value=0.87 Score=48.11 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=62.0
Q ss_pred CccEEEEEeccccccCHHHHHHHHHhcccCCeEEEE-EeCCCh-hhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--h
Q 008488 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--G 476 (564)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvI-vG~g~~-~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ 476 (564)
...+++..|..... ..+.+.+++..+.+.++++++ +|.... .+.+.+ ..+.+.++......+.. .+++ .
T Consensus 271 ~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~---~~~~~~~~~v~~w~pq~---~vL~h~~ 343 (456)
T 2c1x_A 271 TSVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTRGYGMVVPWAPQA---EVLAHEA 343 (456)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH---HHHHTTTEEEESCCCHH---HHHTSTT
T ss_pred cceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH---HhhcCCceEEecCCCHH---HHhcCCc
Confidence 34566777877543 234444444333333566554 443321 111111 11223456655544543 4788 6
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccC-cceeEe
Q 008488 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQM 524 (564)
Q Consensus 477 ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~l~ 524 (564)
+|++|. -+-..+++||+++|+|+|+-...+ ....+.+. +.|..+
T Consensus 344 ~~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l 392 (456)
T 2c1x_A 344 VGAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392 (456)
T ss_dssp EEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe
Confidence 678885 234567999999999999985432 44555565 677763
No 63
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=83.65 E-value=2.3 Score=44.92 Aligned_cols=114 Identities=16% Similarity=0.042 Sum_probs=61.7
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEE-eCCChhh-HHHHHHHHHhCCCceEEEeccChHHHHHHHH--hc
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGKKPM-EKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GA 477 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIv-G~g~~~~-~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~A 477 (564)
..+++..|.+...-+.+.+.+++..+.+.+++++++ |.+.+.+ +...+++.. ++++......+.. .+++ .+
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~--~~~~~v~~w~pq~---~vL~h~~~ 351 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL--EGKGMICGWAPQV---EVLAHKAI 351 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH--HCSEEEESSCCHH---HHHHSTTE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc--CCCEEEEccCCHH---HHhCCCcc
Confidence 456677788762223333433333333336776655 4331111 111112210 2345555543543 3676 57
Q ss_pred CEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccc-cccCcceeEe
Q 008488 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDT-VEEGFTGFQM 524 (564)
Q Consensus 478 Dv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~-v~~g~~G~l~ 524 (564)
|+||. -+-..+++||+++|+|+|+--..+ .... +++-+.|..+
T Consensus 352 ~~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l 399 (463)
T 2acv_A 352 GGFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399 (463)
T ss_dssp EEEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEES
T ss_pred CeEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEE
Confidence 77875 234567999999999999986533 4444 4566678763
No 64
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=82.97 E-value=4 Score=43.16 Aligned_cols=110 Identities=6% Similarity=-0.094 Sum_probs=60.7
Q ss_pred ccEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEEEeCCC-----h-hhHHHHHHHHHhCCCceEEEeccChHHHHHH
Q 008488 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGK-----K-PMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (564)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvIvG~g~-----~-~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~i 473 (564)
..+++..|.+.. ...+..++++++. .+++++++-..+ . .+.+ .+.++.++++......+.. .+
T Consensus 296 ~vv~vs~GS~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~l~~---~~~~~~~~~~~v~~~~pq~---~~ 366 (482)
T 2pq6_A 296 SVVYVNFGSTTVMTPEQLLEFAWGLAN---CKKSFLWIIRPDLVIGGSVIFSS---EFTNEIADRGLIASWCPQD---KV 366 (482)
T ss_dssp CEEEEECCSSSCCCHHHHHHHHHHHHH---TTCEEEEECCGGGSTTTGGGSCH---HHHHHHTTTEEEESCCCHH---HH
T ss_pred ceEEEecCCcccCCHHHHHHHHHHHHh---cCCcEEEEEcCCccccccccCcH---hHHHhcCCCEEEEeecCHH---HH
Confidence 346666777642 1114444555544 467776653211 0 0111 1222234567666544543 38
Q ss_pred HHhcCE--EEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccc-cCcceeEe
Q 008488 474 IAGADF--ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQM 524 (564)
Q Consensus 474 l~~ADv--~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~l~ 524 (564)
++.+++ +|. . +-..+++||+++|+|+|+--..+ ....+. +-+.|..+
T Consensus 367 L~h~~~~~~vt--h--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l 420 (482)
T 2pq6_A 367 LNHPSIGGFLT--H--CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420 (482)
T ss_dssp HTSTTEEEEEE--C--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred hcCCCCCEEEe--c--CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEE
Confidence 877666 553 2 34567999999999999986533 344343 45677763
No 65
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=75.80 E-value=2.2 Score=43.99 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+|++ .| ++|--.-...|+++|+++||+|+++++.
T Consensus 1 M~Il~~~---~~---~~GHv~P~l~la~~L~~~Gh~V~~~~~~ 37 (415)
T 1iir_A 1 MRVLLAT---CG---SRGDTEPLVALAVRVRDLGADVRMCAPP 37 (415)
T ss_dssp CEEEEEC---CS---CHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEc---CC---CchhHHHHHHHHHHHHHCCCeEEEEcCH
Confidence 8999985 23 4677777788999999999999999876
No 66
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=75.32 E-value=11 Score=39.90 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=30.9
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CCeEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh~V~vitp~~ 128 (564)
++|+|+++. +| ..|--.-+..|++.|+++ ||+|+++++..
T Consensus 5 ~~~~vl~~p---~p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 5 KTPHVAIIP---SP---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp -CCEEEEEC---CS---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCcEEEEec---Cc---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 358888887 34 355666778899999998 99999998763
No 67
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=74.79 E-value=4 Score=34.93 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=31.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeE-EEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V-~vitp~ 127 (564)
||++|+... .|+ ..-.......++.++.+.||+| .|+.-.
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 899999976 675 3344556788999999999999 887654
No 68
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=73.48 E-value=4.5 Score=35.34 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeE-EEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V-~vitp~ 127 (564)
.|||+|+... .|+ ..-.+.....++.++.+.||+| .|+.-.
T Consensus 12 ~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 6999999987 776 3345556788999999999999 777654
No 69
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=71.30 E-value=4.6 Score=39.62 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=28.6
Q ss_pred cCCCceEEEEEeeccCccccchH-HHHhhhhHHHHHhCCCeEEEEee
Q 008488 81 CGVGLNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 81 ~~~~MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+++||||+|... |. .++. ........++|.+.||+|.++--
T Consensus 19 ~m~~MKiLII~aH--P~--~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 19 YFQSMKVLLIYAH--PE--PRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ---CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred hhhCCeEEEEEeC--CC--CccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4678999999974 64 2333 33455577888899999999853
No 70
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=69.59 E-value=3.2 Score=40.44 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=25.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++. ||.|-+=..|++.|.++||+|++++.+
T Consensus 1 MkILVT----------GatGfIG~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVG----------GGTGFIGTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 887654 455545566999999999999999865
No 71
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=64.62 E-value=4.6 Score=39.13 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
++||||+.+..- =.+.-+..|.++|.+ +|+|.|++|..+
T Consensus 10 ~~m~ILlTNDDG-------i~apGi~aL~~~l~~-~~~V~VVAP~~~ 48 (261)
T 3ty2_A 10 PKLRLLLSNDDG-------VYAKGLAILAKTLAD-LGEVDVVAPDRN 48 (261)
T ss_dssp -CCEEEEECSSC-------TTCHHHHHHHHHHTT-TSEEEEEEESSC
T ss_pred CCCeEEEEcCCC-------CCCHHHHHHHHHHHh-cCCEEEEecCCC
Confidence 469999888752 223347789999987 799999999754
No 72
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=59.43 E-value=9.1 Score=37.31 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.+++..+|++|--+.-+..--.+..++..|+|+|+..+|...+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 44577899999977655544444667889999999988876444
No 73
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=59.39 E-value=7.2 Score=35.61 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=25.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. +|++| ..+++.|.++||+|.+++.+
T Consensus 1 MkvlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIGA-------TGRAG---SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEcC-------CchhH---HHHHHHHHhCCCEEEEEEcC
Confidence 78877664 46666 45788999999999999876
No 74
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=58.85 E-value=13 Score=31.87 Aligned_cols=42 Identities=14% Similarity=-0.137 Sum_probs=32.0
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..+|++||... .|+ ..........++.+.++.||+|.|+...
T Consensus 14 ~~~kl~ii~~s-gP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 14 QXXXILIVVTH-GPE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCCEEEEEECC-CGG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ccceEEEEEcc-CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 35799999987 665 3445556777888888999999988765
No 75
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=58.82 E-value=8.6 Score=40.55 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+++|+++. +| ..|--.-+..|++.|+++||+|+++++.
T Consensus 7 ~~~~vl~~p---~p---~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 7 RKPHVVMIP---YP---VQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp -CCEEEEEC---CS---SHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCEEEEec---Cc---cchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 357999988 34 3566667888999999999999999875
No 76
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=57.88 E-value=7.9 Score=35.53 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=25.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. +|++| ..++++|.++||+|.+++.+
T Consensus 1 MkilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLGA-------TGRAG---SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcC-------CCHHH---HHHHHHHHHCCCEEEEEEec
Confidence 78776664 46665 45788999999999999865
No 77
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=57.67 E-value=9.8 Score=34.18 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=25.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++++. +|++| ..++++|.++||+|.++..+
T Consensus 3 ~~~ilVtGa-------tG~iG---~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 3 VKKIAIFGA-------TGQTG---LTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEcC-------CcHHH---HHHHHHHHHCCCeEEEEEeC
Confidence 478877664 36655 45788899999999998865
No 78
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=57.56 E-value=11 Score=33.34 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=31.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+++-. +.+|....++..+++.|.+.|++|.++-..
T Consensus 1 Mkv~IvY~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYL-----SDYGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEEC-----TTSTTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEE-----CCChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 88888864 346999999999999999999999888654
No 79
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=57.49 E-value=11 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=30.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CC-eEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GH-RVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh-~V~vitp~ 127 (564)
||++|+... .|+ ..........++.++.+. || +|.|+...
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 488988876 665 233444578889999998 99 99888765
No 80
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=57.01 E-value=26 Score=35.09 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHhcCEEEEc--CCCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~P--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++- ..-|. ++-..+..|--|.-+|-+.-|++.+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVd 236 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccccc
Confidence 34689999999863 33354 4556899999999999999998665
No 81
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=56.01 E-value=9.2 Score=35.61 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.++|||++.+. +||+|. .+++.|.++||+|.+++.+
T Consensus 19 l~~~~ilVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 19 FQGMRVLVVGA-------NGKVAR---YLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp --CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred cCCCeEEEECC-------CChHHH---HHHHHHHhCCCeEEEEECC
Confidence 35789887764 477664 5788899999999999865
No 82
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=54.88 E-value=26 Score=33.07 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=23.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~ 127 (564)
.|||+|+.+- .+..+..+.++|.+. +++|..+..+
T Consensus 22 ~~rI~~l~SG---------~g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 22 MIRIGVLISG---------SGTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp CEEEEEEESS---------CCHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CcEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 5799999752 133567788888776 6787655544
No 83
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=53.82 E-value=16 Score=31.33 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=31.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+++-. +.+|....++..+++.|.+.|++|.++...
T Consensus 2 ~ki~I~y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 2 SKVLIVFG-----SSTGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp CEEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 67877765 347888999999999999999999988654
No 84
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=52.80 E-value=7.9 Score=39.05 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=24.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vi 124 (564)
.|||++|+. .| .|+. +|.+|+++|++|+|+
T Consensus 1 sm~V~IVGa--Gp----aGl~-----~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGA--GI----GGTC-----LAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECC--SH----HHHH-----HHHHHHHTTCEEEEE
T ss_pred CCEEEEECc--CH----HHHH-----HHHHHHhCCCCEEEE
Confidence 399999996 23 5655 788999999999998
No 85
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=51.76 E-value=14 Score=31.91 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=30.5
Q ss_pred Cc-eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GL-NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~M-kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.| |++|+... .|+ ..-...-...++.++++.||+|.|+.-.
T Consensus 4 ~Mkk~~ivv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~~ 45 (136)
T 2hy5_B 4 VVKKFMYLNRK-APY--GTIYAWEALEVVLIGAAFDQDVCVLFLD 45 (136)
T ss_dssp -CCEEEEEECS-CTT--TSSHHHHHHHHHHHHGGGCCEEEEEECG
T ss_pred chhEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 47 49999976 776 2234455777899999999999988765
No 86
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=50.89 E-value=11 Score=39.64 Aligned_cols=51 Identities=10% Similarity=-0.133 Sum_probs=34.0
Q ss_pred HHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----ccccc-ccCcceeEe
Q 008488 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQM 524 (564)
Q Consensus 472 ~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~l~ 524 (564)
.+++.+++-++-+. +--.+++||+++|+|+|+--..+ ....+ ++-+.|..+
T Consensus 351 ~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l 406 (480)
T 2vch_A 351 QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP 406 (480)
T ss_dssp HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECC
T ss_pred HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEe
Confidence 58999995333222 33456999999999999976533 44443 565677753
No 87
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.75 E-value=1e+02 Score=25.11 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=64.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~P 502 (564)
..+++|+.+.+ ...+.++.+-.+.+-.+. ..-+.+++...+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 6 RPRILICEDDP-DIARLLNLMLEKGGFDSD--MVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCEEEEcCCH-HHHHHHHHHHHHCCCeEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 35677776544 345555555555443332 2224444444444 34888875554 4567778877764 678
Q ss_pred EEEcCccc----cc-cccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 503 PIVASTGG----LV-DTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 503 vI~s~~gg----~~-e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|.-.... .. +....|..+|+ ..|.+.+.|.++|...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWL----------EKPIDENLLILSLHRA 124 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEE----------CSSCCHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEE----------eCCCCHHHHHHHHHHH
Confidence 77654332 22 45566778888 7888999998877543
No 88
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=50.75 E-value=16 Score=31.26 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=30.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+++.. +.+|-...++..+++.|.+.|++|.++...
T Consensus 1 mki~iiy~-----S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYG-----STTGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEE-----CSSSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEE-----CCcCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 78888864 236888889999999999999999887543
No 89
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=50.63 E-value=10 Score=34.81 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=25.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. +|++| ..+++.|.++||+|.++..+
T Consensus 1 M~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVGS-------TGRVG---KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEEST-------TSHHH---HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 78777664 46666 46888999999999999866
No 90
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=50.14 E-value=19 Score=30.14 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=29.0
Q ss_pred eEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|++|+... .|+ ..-.+.-..+++.++.+.||+|.|+.-.
T Consensus 3 k~~~vv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~vff~~ 41 (119)
T 2d1p_B 3 RIAFVFST-APH--GTAAGREGLDALLATSALTDDLAVFFIA 41 (119)
T ss_dssp CEEEEECS-CTT--TSTHHHHHHHHHHHHHTTCSCEEEEECG
T ss_pred EEEEEEcC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEeh
Confidence 58898876 776 2223344667889999999999888765
No 91
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=49.80 E-value=11 Score=36.10 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=28.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+.. |=.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDD-------GIYSPGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 899888765 222344788999999888 9999999754
No 92
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=49.44 E-value=14 Score=36.42 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=30.2
Q ss_pred HHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.+++..+|++|--+.-+..---+..++..|+|+|+..+|...+
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e 125 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKT 125 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 44577899999965543433333556788999999988876443
No 93
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=49.11 E-value=12 Score=34.91 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=28.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++ +.. ..-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 mkI~v-s~k-----GGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAV-AGK-----GGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp CEEEE-ECS-----SSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CEEEE-ecC-----CCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 88888 631 12355567788999999999999999665
No 94
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=48.74 E-value=12 Score=36.05 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=29.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+.. |=.+.-+..|.++|.+.| +|.|++|..+
T Consensus 2 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDD-------GYFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CEEEEECCC-------CCCCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 999988875 222334788999999998 9999999754
No 95
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=48.26 E-value=12 Score=35.91 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+.. |=.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (247)
T 1j9j_A 1 MRILVTNDD-------GIQSKGIIVLAELLSEEH-EVFVVAPDKE 37 (247)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 899888765 222334788999999888 9999999754
No 96
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=47.14 E-value=18 Score=32.58 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=29.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|.+. ...-|-.+...+|+.+|+++|++|.++-..
T Consensus 1 M~vi~v~s~----kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNP----KGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCS----STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeC----CCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 787777753 123455677888999999999999999765
No 97
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=46.74 E-value=23 Score=31.85 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=31.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|... | .|-...++..+++.+.+.|++|.++...
T Consensus 5 M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 5 SPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred cceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 3699999864 3 5778888888999999999999988654
No 98
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.53 E-value=29 Score=28.60 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCcccc
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKD 133 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~~ 133 (564)
+.|||++++.. ....+..+..+-++..++|.+|.+.+..++...+
T Consensus 5 ~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~ 49 (108)
T 3nbm_A 5 KELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGAHYD 49 (108)
T ss_dssp CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT
T ss_pred cCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh
Confidence 57999999963 2344555566777777889999998755444333
No 99
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=46.32 E-value=13 Score=36.50 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=28.4
Q ss_pred cccCCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 79 ~~~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+....+|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 15 ~~~~~~~~vlVTGa-------sG~iG---~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 15 VPRGSHMRILITGG-------AGCLG---SNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp CSTTTCCEEEEETT-------TSHHH---HHHHHHHGGGTCEEEEEECC
T ss_pred cccCCCCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 33345788887664 46666 45788899999999998764
No 100
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=45.40 E-value=14 Score=36.24 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=28.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
||||+.+.. |=.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDD-------Gi~ApGi~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDD-------GVHSPGLRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHGGGS-EEEEEEESSC
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 899888765 222334788999999988 9999999754
No 101
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=44.51 E-value=22 Score=33.49 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=29.1
Q ss_pred CceEEEEEeeccCccccch-HHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG-~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||++|... |. .+| ...++..+.+.|.+.||+|.++-..
T Consensus 1 ~mkiLiI~gs--pr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAH--QE--PKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeC--CC--CCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4999999985 53 344 3455566777788889999999654
No 102
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=43.89 E-value=16 Score=35.18 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=28.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
.||||+.+.. |=.+.-+..|.++|++.| +|.|++|..+
T Consensus 1 ~M~ILlTNDD-------Gi~apGi~aL~~~L~~~g-~V~VVAP~~~ 38 (254)
T 2v4n_A 1 SMRILLSNDD-------GVHAPGIQTLAKALREFA-DVQVVAPDRN 38 (254)
T ss_dssp CCEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CCeEEEEcCC-------CCCCHHHHHHHHHHHhCC-cEEEEeeCCC
Confidence 4899988865 222334778999998886 9999999754
No 103
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=43.71 E-value=17 Score=32.72 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||++.+. +||+| ..+++.|+ +|++|.++..+
T Consensus 2 ~kM~vlVtGa-------sg~iG---~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 2 NAMKILLIGA-------SGTLG---SAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp CSCEEEEETT-------TSHHH---HHHHHHHT-TTSEEEEEESS
T ss_pred CCcEEEEEcC-------CcHHH---HHHHHHHH-CCCeEEEEecC
Confidence 3688766654 46666 45788888 99999888754
No 104
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=43.40 E-value=29 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=32.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|... | .|-...++..+++.+.+.|++|.++-..
T Consensus 6 mmkilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYS--S---TGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEEC--C---CChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 5899999863 3 5778888888999999999999988654
No 105
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=43.29 E-value=21 Score=29.69 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=24.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++++. |.+| ..++..|.+.||+|.++..+
T Consensus 4 ~m~i~IiG~--------G~iG---~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI--------GRVG---YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 589988863 3333 34788899999999998754
No 106
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=42.28 E-value=33 Score=32.80 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+.||.+||+.. ...-|-..+...|+++|+++|++|..+=|
T Consensus 23 ~~~m~~i~Itgt----~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 23 QSHMTILVVTGT----GTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp CSSCEEEEEEES----STTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 457999999975 22457777889999999999999998865
No 107
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=42.17 E-value=1e+02 Score=25.23 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=60.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~P 502 (564)
..+++|+.+.+. ..+.+..+-...+ +.....-+..++...+. ..|++|+=... +.-|+.+++.+.. .+|
T Consensus 8 ~~~iLivd~~~~-~~~~l~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 8 WWRIMLVDTQLP-ALAASISALSQEG--FDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp CEEEEEECTTGG-GGHHHHHHHHHHT--EEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHH-HHHHHHHHHHHcC--CeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 567788876553 3333333333322 22222234444444443 36888876554 4567778887764 677
Q ss_pred EEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|.-.... ..+.+..|..+|+ ..|.+.+.|..+|..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~L~~~i~~ 124 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFI----------AKPVNAIRLSARIKR 124 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEE----------ESSCCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEE----------eCCCCHHHHHHHHHH
Confidence 76543322 2334456788988 678888888877754
No 108
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=41.89 E-value=1.3e+02 Score=24.85 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=65.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH-----------hcCEEEEcCCC-CCCcHHHHHHHH
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA-----------GADFILIPSRF-EPCGLIQLHAMR 498 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~-----------~ADv~v~PS~~-E~~gl~~lEAma 498 (564)
..+++|+.+.+ ...+.++.+-.+.+........-+..++...+. ..|++++=... +.-|+-+++.+.
T Consensus 4 ~~~ILivddd~-~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 4 SVTIVMIEDDL-GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp -CEEEEECCCH-HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CceEEEEeCCH-HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 35677777654 355566666555553112222335555555553 35787775443 456777888776
Q ss_pred c-----CCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 499 Y-----GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 499 ~-----G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
. .+|+|...... ..+.+..|..+|+ ..|.+.+.|.++|...
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYI----------TKPVNYENFANAIRQL 132 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE----------ECCSSHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEE----------eCCCCHHHHHHHHHHH
Confidence 5 56776544332 3344566788888 6888999998887654
No 109
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=41.76 E-value=30 Score=32.30 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=24.9
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~ 127 (564)
++|||+++.+ |.|..+..|..++.+ .+++|..+..+
T Consensus 4 ~~~riavl~S---------G~Gsnl~all~~~~~~~~~eI~~Vis~ 40 (215)
T 3tqr_A 4 EPLPIVVLIS---------GNGTNLQAIIGAIQKGLAIEIRAVISN 40 (215)
T ss_dssp CCEEEEEEES---------SCCHHHHHHHHHHHTTCSEEEEEEEES
T ss_pred CCcEEEEEEe---------CCcHHHHHHHHHHHcCCCCEEEEEEeC
Confidence 4799998874 234467778777765 36788776664
No 110
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=40.87 E-value=94 Score=30.93 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHHHHhcCEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -| -++-..++.|.-|.-+|-+..|++.+
T Consensus 188 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRg~~vd 236 (334)
T 2pi1_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECCCCcccC
Confidence 4568999999986422 23 34556888899999999998888654
No 111
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=40.86 E-value=27 Score=32.57 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=23.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCC--eEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh--~V~vitp~ 127 (564)
|||+|+.+- .+..+..+.++|.+.+| +|..+..+
T Consensus 2 ~rI~vl~SG---------~g~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSG---------RGSNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECS---------CCHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 699998742 22467778888888888 76555443
No 112
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=40.33 E-value=1.4e+02 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=20.9
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEE
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVM 122 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~ 122 (564)
+.|||++|-.+ | .....+...|.+.|+++.
T Consensus 11 k~~rILiVDD~--~--------~~r~~l~~~L~~~G~~~v 40 (134)
T 3to5_A 11 KNMKILIVDDF--S--------TMRRIVKNLLRDLGFNNT 40 (134)
T ss_dssp TTCCEEEECSC--H--------HHHHHHHHHHHHTTCCCE
T ss_pred CCCEEEEEeCC--H--------HHHHHHHHHHHHcCCcEE
Confidence 46999999864 2 234556777888998743
No 113
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=40.17 E-value=47 Score=30.80 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=81.3
Q ss_pred EEEEEeccccccCHHHHHHHHHhcccCC-eEEEEEeCCC-hhhHHHHHHHHHh--------------CCC-ceEEEeccC
Q 008488 404 VIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGK-KPMEKQLEQLEIL--------------YPE-KARGVAKFN 466 (564)
Q Consensus 404 ~i~~iGrl~~~KG~d~ll~A~~~l~~~~-v~lvIvG~g~-~~~~~~l~~L~~~--------------~~~-~v~~~~~~~ 466 (564)
+=-|+||-...||.-.+.+--+++.++. -.-|+-|-.. +.+. .+++-... .|+ -.....-+-
T Consensus 199 inrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafi-aikekgipyeyygnreidkmnlapnqpaqildcyi 277 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFI-AIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYI 277 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHH-HHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCC
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCceE-EEcccCCchhhcCcchhhhhcCCCCCcchhhhhee
Confidence 4579999999999999999999998853 3344555322 2111 11111110 011 122222233
Q ss_pred hHHHHHHHHhcCEEEEcCCC------CCCcHHHHHHHHcCCcEEEcC-ccccccc------cccCcceeEeecccccccc
Q 008488 467 IPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVAS-TGGLVDT------VEEGFTGFQMGSFSVDVIY 533 (564)
Q Consensus 467 ~~~~~~il~~ADv~v~PS~~------E~~gl~~lEAma~G~PvI~s~-~gg~~e~------v~~g~~G~l~~~~~~~~~~ 533 (564)
..++.+-+..+.+.-..|.. -..-.+-+|--+||+.+|--. +|..-.. +.....|+++
T Consensus 278 nsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiw--------- 348 (401)
T 1xv5_A 278 NSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIW--------- 348 (401)
T ss_dssp HHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEE---------
T ss_pred cHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEE---------
Confidence 34444578888888777753 356778999999999887653 3332221 1223567765
Q ss_pred CCCCCHHHHHhhccc
Q 008488 534 SSPSYNSRVIPRIPL 548 (564)
Q Consensus 534 v~~~d~~aLa~aI~~ 548 (564)
.+.+|.++--+.|.+
T Consensus 349 fdendmestferike 363 (401)
T 1xv5_A 349 FDENDMESTFERIKE 363 (401)
T ss_dssp ECTTCHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHH
Confidence 788888887666654
No 114
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=39.96 E-value=20 Score=35.00 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|+|++.+. +|++| ..|++.|.++||+|.++..+
T Consensus 2 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 2 SGKRALITGI-------RGQDG---AYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp -CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEECC
Confidence 3577776653 46665 45788899999999988754
No 115
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=39.79 E-value=28 Score=31.37 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=31.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|... .|-...++..+++.+.+.|++|.++-..
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 4899999864 4677888888999998899999988654
No 116
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=39.54 E-value=25 Score=34.45 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=26.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.|||++.+. +|++| ..|++.|.++||+|.++..+.
T Consensus 13 ~M~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 13 HVKYAVLGA-------TGLLG---HHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEecCh
Confidence 488877664 46655 457888899999999988653
No 117
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=39.37 E-value=2.1e+02 Score=27.44 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=72.2
Q ss_pred ccEEEEEecccc--ccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc--ChHHHHHHHHhc
Q 008488 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (564)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~--~~~~~~~il~~A 477 (564)
.|+++ .+-+++ ..|.+.+++.+.+. .+.-+|+.+-+.+-...+.+...+++-+..+...- +.+.+..+.+.+
T Consensus 96 ~Pivl-m~Y~npv~~~g~e~f~~~~~~a---Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~ 171 (267)
T 3vnd_A 96 MPIGL-LLYANLVFANGIDEFYTKAQAA---GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG 171 (267)
T ss_dssp CCEEE-EECHHHHHHHCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHhhHHHHHHHHHHc---CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 35444 355554 67999999999887 78888888776433445555556666444433332 457778888888
Q ss_pred CEEE-EcCCCCCCcHH------HHHHHH-----cCCcEEEcCcccc--cc----ccccCcceeEeeccccc
Q 008488 478 DFIL-IPSRFEPCGLI------QLHAMR-----YGTVPIVASTGGL--VD----TVEEGFTGFQMGSFSVD 530 (564)
Q Consensus 478 Dv~v-~PS~~E~~gl~------~lEAma-----~G~PvI~s~~gg~--~e----~v~~g~~G~l~~~~~~~ 530 (564)
+-|| +.|.....|.. +.|.+. ..+|+++ .+|+ +| .+..+..|+++|...+.
T Consensus 172 ~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v--GfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 172 EGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL--GFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp CSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE--ECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 7333 33554322221 222222 3677776 3444 33 44567899998865554
No 118
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=39.20 E-value=36 Score=31.90 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+||.+||+.. . ..-|-..+...|+++|+++|++|..+=|
T Consensus 2 ~~mk~i~Itgt-~---t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 2 NAMKKFFIIGT-D---TEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp TTCEEEEEEES-S---SSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCcEEEEEeC-C---CCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 47999999975 2 2457777888999999999999988754
No 119
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=39.14 E-value=1.5e+02 Score=23.81 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=63.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh---cCEEEEcCCC-CCCcHHHHHHHHc----CCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY----GTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~---ADv~v~PS~~-E~~gl~~lEAma~----G~P 502 (564)
..+++|+.+.+ ...+.++++-...+..+.. .-+...+...+.. .|++++=... +.-|+.+++.+.. .+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 7 RPLVLVVDDNA-VNREALILYLKSRGIDAVG--ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHHcCceEEE--eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45677777654 3455555555554434433 2344444334432 5777765443 4567788887754 367
Q ss_pred EEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|...... ..+.+..|..+|+ ..|.+.+.|.++|.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFL----------LKPVDLGKLLELVNKE 124 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHhCCcceEE----------eCCCCHHHHHHHHHHH
Confidence 76544322 3344556788888 6888999998887653
No 120
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=39.12 E-value=1.1e+02 Score=24.76 Aligned_cols=103 Identities=13% Similarity=0.214 Sum_probs=56.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCCCCCcHHHHHHHH--c-CCcEEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMR--Y-GTVPIV 505 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~E~~gl~~lEAma--~-G~PvI~ 505 (564)
..+++|+.+.+ ...+.+..+-...+..+. ..-+.+++...+. ..|++++| +.-|+.+++.+. . .+|+|.
T Consensus 18 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ 91 (137)
T 2pln_A 18 SMRVLLIEKNS-VLGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEE
Confidence 45666666543 244444444444332232 2223333333443 34777722 334566666654 3 677775
Q ss_pred cCccc----cccccccCcceeEeeccccccccCCCC-CHHHHHhhcccC
Q 008488 506 ASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPS-YNSRVIPRIPLD 549 (564)
Q Consensus 506 s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~-d~~aLa~aI~~~ 549 (564)
..... ..+.+..|..+|+ ..|. +.+.|..+|...
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYI----------AKPYRSIKALVARIEAR 130 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEE----------ESSCSCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHcCCceee----------eCCCCCHHHHHHHHHHH
Confidence 53322 3444556778888 6788 889988877654
No 121
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=38.74 E-value=60 Score=32.07 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCEEEEcC--CCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 468 PLAHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
..+.++++.||++++.- .-|. ++-..+..|.-|.-+|-+..|++.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 235 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhh
Confidence 46677999999998643 2233 4455777788888899888888654
No 122
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=38.57 E-value=25 Score=33.23 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCceEEEEEeeccCccccchH--HHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~--~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||+.|.+. .||. .+...+|+.+|+++|++|.++=..
T Consensus 4 ~~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~g~~VlliD~D 44 (257)
T 1wcv_1 4 AKVRRIALANQ------KGGVGKTTTAINLAAYLARLGKRVLLVDLD 44 (257)
T ss_dssp -CCCEEEECCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEEeC------CCCchHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 36787777643 3554 467788999999999999999654
No 123
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=38.44 E-value=33 Score=32.99 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=29.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||+.|+. - ..-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 ~MkvIavs~--K---GGvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 1 AMRQCAIYG--K---GGIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp CCEEEEEEE--C---TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEEEeC--C---CcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 488877752 1 13355667789999999999999998554
No 124
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=38.20 E-value=23 Score=35.03 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|.+|||++++. +|++| ..++++|.+.||+|.+++..
T Consensus 8 M~~~~IlVtGa-------tG~iG---~~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 8 SPKGRVLIAGA-------TGFIG---QFVATASLDAHRPTYILARP 43 (346)
T ss_dssp ---CCEEEECT-------TSHHH---HHHHHHHHHTTCCEEEEECS
T ss_pred CCCCeEEEECC-------CcHHH---HHHHHHHHHCCCCEEEEECC
Confidence 34578888775 46666 34778888999999999875
No 125
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=37.71 E-value=34 Score=32.95 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++||++.|++. -| .-|-.+...+||.+|++.|.+|.+|=..
T Consensus 80 ~~~kvI~vts~-kg---G~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 80 SAVQSIVITSE-AP---GAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCCEEEEECS-ST---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46888888863 12 3466778899999999999999999654
No 126
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=37.51 E-value=1.7e+02 Score=24.07 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=57.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh---cCEEEEcCCC-CCCcHHHHHHHH---cCCcE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~---ADv~v~PS~~-E~~gl~~lEAma---~G~Pv 503 (564)
..+++|+.+.+ ...+.++.+-....+.......-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 3 ~~~iLivdd~~-~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHH-LIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 35677777654 3455555554443221122222345555556654 6888875543 345676666665 36787
Q ss_pred EEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|...... ..+.+..|..|++ ..|.+.+.|.++|..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~L~~~l~~ 120 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFI----------PKSADPQVLIHAVSL 120 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBC----------CTTSCHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHccCCEEE----------eCCCCHHHHHHHHHH
Confidence 7654332 3344456778887 678888888776643
No 127
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=37.30 E-value=29 Score=32.14 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=29.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh~V~vitp~ 127 (564)
++|||+.|.+. ...-|-.+...+|+.+|+++ |++|.++=..
T Consensus 2 ~~~~vI~v~s~----kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 2 NAKRVFGFVSA----KGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp -CCEEEEEEES----STTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCCeEEEEECC----CCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 35777777653 12345566778899999999 9999999665
No 128
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=37.26 E-value=27 Score=31.88 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. +|++| ..+++.|.++||+|.++..+
T Consensus 5 ~~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIGA-------SGFVG---SALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEETC-------CHHHH---HHHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEcC-------CchHH---HHHHHHHHHCCCEEEEEEcC
Confidence 67766553 35555 55888999999999999876
No 129
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=37.21 E-value=37 Score=30.41 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~ 127 (564)
|||++|... | .|-...++..+++.+.+ .|++|.++-..
T Consensus 2 mkilii~~S--~---~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYS--M---YGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeC--C---CcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 799999864 3 57788888889999998 89999988654
No 130
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=37.11 E-value=1.7e+02 Score=23.76 Aligned_cols=105 Identities=12% Similarity=0.165 Sum_probs=64.0
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH----hcCEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~----~ADv~v~PS~~-E~~gl~~lEAma~---G~Pv 503 (564)
.+++|+.+.+ ...+.++.+-...+..+. ..-+.+++...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 4 AKILVIDDES-TILQNIKFLLEIDGNEVL--TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CEEEEEcCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4677777653 355566666555553332 2334445544554 56888876554 4567777666543 6777
Q ss_pred EEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|.-.... ..+.+..|..+|+ ..|.+.+.|..+|...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYL----------RKPVTAQDLSIAINNA 120 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeE----------eCCCCHHHHHHHHHHH
Confidence 6543322 3445667888998 6888888888877554
No 131
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=36.90 E-value=33 Score=31.85 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=28.2
Q ss_pred CceEEEEEeeccCccccchHHHH--hhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~--~~~La~aLa~~Gh~V~vitp~ 127 (564)
++||++-. +||.+.+ .-.|.+.|.+.|++|.++...
T Consensus 5 ~k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 5 GKRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TCEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 56787766 3555656 678999999999999999765
No 132
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.66 E-value=1.6e+02 Score=23.46 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=63.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh---------cCEEEEcCCC-CCCcHHHHHHHH---
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---------ADFILIPSRF-EPCGLIQLHAMR--- 498 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~---------ADv~v~PS~~-E~~gl~~lEAma--- 498 (564)
.+++|+.+.+ ...+.++.+-...+........-+..++...+.. .|++++=... +.-|+.+++.+.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 3 KKIFLVEDNK-ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 4566776543 3555666665555431122233355555555553 6888876554 446777777765
Q ss_pred --cCCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 499 --YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 499 --~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
..+|+|.-.... ..+.+..|..+++ ..|.+.+.|.++|...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYI----------TKSANLSQLFQIVKGI 128 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEE----------ECCSSHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhhee----------cCCCCHHHHHHHHHHH
Confidence 457776543322 3344556788888 6888899988877543
No 133
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=36.17 E-value=52 Score=30.53 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=22.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~ 127 (564)
|||+++.+- . | ..+..|..++.+. +|+|..+..+
T Consensus 1 ~ri~vl~Sg------~-g--snl~ali~~~~~~~~~~~i~~Vis~ 36 (212)
T 1jkx_A 1 MNIVVLISG------N-G--SNLQAIIDACKTNKIKGTVRAVFSN 36 (212)
T ss_dssp CEEEEEESS------C-C--HHHHHHHHHHHTTSSSSEEEEEEES
T ss_pred CEEEEEEEC------C-c--HHHHHHHHHHHcCCCCceEEEEEeC
Confidence 688888852 2 2 3577777777665 6887766554
No 134
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=35.84 E-value=30 Score=32.97 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.+|||+++++ |++| ..|+++|.++||+|.+++.+.
T Consensus 2 ~~~~ilVtGa--------G~iG---~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 2 SLSKILIAGC--------GDLG---LELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCCEEEECC--------SHHH---HHHHHHHHHTTCCEEEEECTT
T ss_pred CCCcEEEECC--------CHHH---HHHHHHHHHCCCEEEEEeCCc
Confidence 4578877651 4444 347889999999999998763
No 135
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=35.77 E-value=1.7e+02 Score=23.67 Aligned_cols=108 Identities=7% Similarity=0.059 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 008488 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (564)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma~-----G~ 501 (564)
...+++|+.+.+ ...+.+..+-...+..+ ...-+.+++...+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDA-HVRIAVKTILSDAGFHI--ISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCH-HHHHHHHHHHHHTTCEE--EEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHCCeEE--EEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 356777777654 34555555555444223 222344555445554 4777775544 4467777777754 46
Q ss_pred cEEEcCc----cccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 502 VPIVAST----GGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 502 PvI~s~~----gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
|+|.-.. ....+.+..|..+++ ..|.+.+.|.++|....
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYI----------TKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEE----------ESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEE----------eCCCCHHHHHHHHHHHH
Confidence 6665432 223445556777887 67888999888776543
No 136
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=35.71 E-value=53 Score=28.81 Aligned_cols=41 Identities=20% Similarity=-0.010 Sum_probs=27.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
...||++++-. +|. .--+-..+-.|+..|.++||+|+|.+-
T Consensus 4 ~~~m~~LilLG--CPE--~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 4 ESTGKALMVLG--CPE--SPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp --CCEEEEECC--CSC--STTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccceeeeEEec--CCC--CcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 34699888864 443 222344566689999999999999863
No 137
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=35.50 E-value=1.1e+02 Score=30.47 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHhcCEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -| -++-..+..|.-|.-+|-+..|++.+
T Consensus 194 l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 242 (343)
T 2yq5_A 194 FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVD 242 (343)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred HHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhh
Confidence 4568999999986433 23 34556888899999999999888655
No 138
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=35.11 E-value=39 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=24.5
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCC--CeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G--h~V~vitp~ 127 (564)
|.++||+++.+ |.+..+..|..++.+.+ ++|..+..+
T Consensus 5 m~~~ri~vl~S---------G~gsnl~all~~~~~~~l~~~I~~Visn 43 (209)
T 4ds3_A 5 MKRNRVVIFIS---------GGGSNMEALIRAAQAPGFPAEIVAVFSD 43 (209)
T ss_dssp -CCEEEEEEES---------SCCHHHHHHHHHHTSTTCSEEEEEEEES
T ss_pred CCCccEEEEEE---------CCcHHHHHHHHHHHcCCCCcEEEEEEEC
Confidence 56789988874 23446777888886543 677766654
No 139
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=34.86 E-value=33 Score=31.71 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=28.0
Q ss_pred CceEEEEEeeccCccccchHHHH--hhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~--~~~La~aLa~~Gh~V~vitp~ 127 (564)
++||++-. +|+.+.+ ...|.+.|.+.|++|.++...
T Consensus 7 ~k~I~lgi--------TGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 7 GKHVGFGL--------TGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TCEEEEEC--------CSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 56777655 3555555 788999999999999999765
No 140
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=34.53 E-value=1e+02 Score=30.53 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=31.8
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-.. + -++-..++.|.-|.-+|.+..|++.+
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 241 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 241 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccC
Confidence 44688999999875432 2 24455788898899899888887654
No 141
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=34.46 E-value=34 Score=32.96 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=24.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++.+. +|++| ..|++.|.++||+|.++...
T Consensus 1 m~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 33 (312)
T 3ko8_A 1 MRIVVTGG-------AGFIG---SHLVDKLVELGYEVVVVDNL 33 (312)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECC-------CChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 67666553 35555 45788999999999988754
No 142
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=34.38 E-value=2.3e+02 Score=27.21 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=74.7
Q ss_pred ccEEEEEeccc--cccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc--ChHHHHHHHHhc
Q 008488 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (564)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~--~~~~~~~il~~A 477 (564)
.|+++ .+-++ ...|.+.+++.+.+. .+.-+|+.+-+.+-.+.+.+...+++-...+...- +.+.+..+.+.+
T Consensus 98 ~Pivl-m~Y~n~v~~~g~~~f~~~~~~a---GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~ 173 (271)
T 3nav_A 98 TPIGL-LMYANLVYARGIDDFYQRCQKA---GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG 173 (271)
T ss_dssp SCEEE-EECHHHHHHTCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHHhHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 35554 35554 467999999998887 78888888877444445666666766444444443 457777788888
Q ss_pred CEEEEc-CCCC------CCcHHHHHHHH-----cCCcEEEcCcccc--cc----ccccCcceeEeeccccc
Q 008488 478 DFILIP-SRFE------PCGLIQLHAMR-----YGTVPIVASTGGL--VD----TVEEGFTGFQMGSFSVD 530 (564)
Q Consensus 478 Dv~v~P-S~~E------~~gl~~lEAma-----~G~PvI~s~~gg~--~e----~v~~g~~G~l~~~~~~~ 530 (564)
.-||.. |... .++..+.|.+. ..+|+++ .+|+ +| .+..+..|.++|...+.
T Consensus 174 ~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v--GfGIst~e~~~~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 174 KGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL--GFGISEPAQVKQAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp CSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred CCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE--ECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 655544 4421 23333333332 3678776 3444 23 44567889998866554
No 143
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=34.32 E-value=32 Score=33.73 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=24.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||++|+. |.+|. .++..|+ .||+|+++...
T Consensus 2 ~mkI~IiGa--------Ga~G~---~~a~~L~-~g~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGG--------GSVGL---LCAYYLS-LYHDVTVVTRR 33 (307)
T ss_dssp CCEEEEECC--------SHHHH---HHHHHHH-TTSEEEEECSC
T ss_pred CCEEEEECC--------CHHHH---HHHHHHh-cCCceEEEECC
Confidence 599999984 66664 3566778 89999999865
No 144
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.14 E-value=1.8e+02 Score=23.40 Aligned_cols=105 Identities=11% Similarity=0.105 Sum_probs=57.5
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHH-----cCCcE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVP 503 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma-----~G~Pv 503 (564)
.+++|+.+.+ ...+.++++-... ..+. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 4 ~~iLivdd~~-~~~~~l~~~l~~~-~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 4 KKILIIDQQD-FSRIELKNFLDSE-YLVI--ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTT-SEEE--EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhc-ceEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 3566666543 3455555554443 2232 2224444444443 35888876544 344666666665 46777
Q ss_pred EEcCcc----ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 504 IVASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 504 I~s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
|..... ...+.+..|..+|+ ..|.+.+.|.++|....
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYL----------TKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEE----------ESSCCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeee----------eCCCCHHHHHHHHHHHH
Confidence 754332 24445566778888 68889999988876543
No 145
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=34.08 E-value=1.9e+02 Score=23.49 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=66.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma~-----G~P 502 (564)
..+++|+.+.+ ...+.++.+-...+........-+..++...+.. .|++++=... +.-|+.+++.+.. .+|
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNP-DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 45677777643 3555666665555543222333355555555543 5888775543 4567778887765 677
Q ss_pred EEEcCccc----cccccccCcceeEeeccccccccCCCC-CHHHHHhhcccC
Q 008488 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPS-YNSRVIPRIPLD 549 (564)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~-d~~aLa~aI~~~ 549 (564)
+|...... ..+.+..|..+|+ ..|. +.+.|.++|...
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l----------~Kp~~~~~~l~~~i~~~ 125 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVV----------DKSSNNVTDFYGRIYAI 125 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEE----------ECCTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEE----------ECCCCcHHHHHHHHHHH
Confidence 77654332 3344566888998 6888 899998887654
No 146
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=34.08 E-value=26 Score=34.47 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=24.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 17 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 17 RGSHMILVTGS-------AGRVG---RAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ----CEEEETT-------TSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred cCCCEEEEECC-------CChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 34688877664 46655 45788999999999998765
No 147
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=34.01 E-value=1.9e+02 Score=23.39 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=60.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCC--ceEEEeccChHHHHHHHHh--------cCEEEEcCCC-CCCcHHHHHHHH-
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIAG--------ADFILIPSRF-EPCGLIQLHAMR- 498 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~--~v~~~~~~~~~~~~~il~~--------ADv~v~PS~~-E~~gl~~lEAma- 498 (564)
..+++|+.+.+ ...+.+..+-.+.+. .+. ..-+..++...+.. .|++++=... +.-|+.+++.+.
T Consensus 7 ~~~ILivdd~~-~~~~~l~~~L~~~g~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDE-VDIQSVERVFHKISSLIKIE--IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCH-HHHHHHHHHHHHHCTTCCEE--EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHhCCCceEE--EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 45677777654 344445444444332 233 22244454455543 6888876544 445777777775
Q ss_pred ----cCCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhc
Q 008488 499 ----YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRI 546 (564)
Q Consensus 499 ----~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI 546 (564)
..+|+|...... ..+....|..+++ ..|.+.++|.+++
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~L~~~~ 129 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHL----------IKPLDYGEAIKLF 129 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEE----------ESSCCHHHHHHHH
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCCeEE----------ECCCCHHHHHHHH
Confidence 467776543322 3444556778888 6888999988774
No 148
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=33.91 E-value=33 Score=32.08 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=24.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 1 MSIIVISGC------ATGIG---AATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp CCEEEEETT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCC------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 676666632 46665 45888999999999888654
No 149
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=33.86 E-value=30 Score=34.02 Aligned_cols=33 Identities=39% Similarity=0.605 Sum_probs=25.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.+|. .++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~---~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 2 SLNILVIGT--------GAIGS---FYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp -CEEEEESC--------CHHHH---HHHHHHHHTTCEEEEECST
T ss_pred CCEEEEECc--------CHHHH---HHHHHHHhCCCeEEEEeCC
Confidence 589999984 55553 3677888999999999875
No 150
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=33.80 E-value=33 Score=31.81 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=19.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+||+| ..+++.|+++|++|.++..+
T Consensus 10 sg~iG---~~l~~~L~~~g~~V~~~~r~ 34 (255)
T 2dkn_A 10 ASGIG---AALKELLARAGHTVIGIDRG 34 (255)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 45655 45788999999999988754
No 151
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=33.80 E-value=15 Score=38.57 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=63.6
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCh------------------hhHHHHHHHHHhCCCceEEEeccChH-HHH-HHH
Q 008488 415 KGSDILAAAIPHFIKENVQIIVLGTGKK------------------PMEKQLEQLEILYPEKARGVAKFNIP-LAH-MII 474 (564)
Q Consensus 415 KG~d~ll~A~~~l~~~~v~lvIvG~g~~------------------~~~~~l~~L~~~~~~~v~~~~~~~~~-~~~-~il 474 (564)
+.++.+.+.+....++-=+++|+|+|.- .-++.++.+++++++.+...+.-.++ .+. +=+
T Consensus 219 ~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i 298 (461)
T 4g65_A 219 NHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENI 298 (461)
T ss_dssp TTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTG
T ss_pred chHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCc
Confidence 4555565555544333335667776541 13456777777887666666666433 332 256
Q ss_pred HhcCEEEEcCCC-CCCcHHHHHHHHcCCcEEEcC--cccccccccc
Q 008488 475 AGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS--TGGLVDTVEE 517 (564)
Q Consensus 475 ~~ADv~v~PS~~-E~~gl~~lEAma~G~PvI~s~--~gg~~e~v~~ 517 (564)
..+|+++..... |.-=++.+-|-.+|++-+.+. .....++++.
T Consensus 299 ~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~ 344 (461)
T 4g65_A 299 DQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQG 344 (461)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCS
T ss_pred hhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhc
Confidence 889999987765 555566777888999877664 3445555554
No 152
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=33.58 E-value=36 Score=33.66 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.|||++|+. |.+|. .++..|++.||+|.++..+
T Consensus 3 ~~mki~iiG~--------G~~G~---~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 3 ESKTYAVLGL--------GNGGH---AFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp -CCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CcCeEEEECC--------CHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 4589999984 44443 3677888999999988654
No 153
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=33.45 E-value=1.9e+02 Score=23.32 Aligned_cols=108 Identities=6% Similarity=-0.060 Sum_probs=65.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh-------cCEEEEcCCC-CCCcHHHHHHHHc---
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-------ADFILIPSRF-EPCGLIQLHAMRY--- 499 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~-------ADv~v~PS~~-E~~gl~~lEAma~--- 499 (564)
..+++|+.+.+ ...+.++.+....+........-+..++...+.. .|++++-... +.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~-~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 9 IDSVLLIDDDD-IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEEEECSCH-HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred cceEEEEeCCH-HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 35677777653 3556666666554431122223355555556654 6888886554 4567777776654
Q ss_pred ----CCcEEEcCccc----cccccccC-cceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 500 ----GTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 500 ----G~PvI~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+|+|...... ..+....| ..+|+ ..|.+.+.|.++|...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l----------~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYV----------SKPLTANALNNLYNKV 136 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEE----------CSSCCHHHHHHHHHHH
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceee----------eCCCCHHHHHHHHHHH
Confidence 66766554333 23344556 77888 7899999998887643
No 154
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=33.44 E-value=1.4e+02 Score=30.28 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=56.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc--------ChHHHHHHHHhcCEEEEcC--CCC-------CCcHHH
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFILIPS--RFE-------PCGLIQ 493 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~--------~~~~~~~il~~ADv~v~PS--~~E-------~~gl~~ 493 (564)
+-.+-|+|-|. +-..+.+.....+.++..+... ....+.++++.||++++-- .-| -++-..
T Consensus 119 gktvGIIGlG~--IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~ 196 (381)
T 3oet_A 119 DRTIGIVGVGN--VGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETL 196 (381)
T ss_dssp GCEEEEECCSH--HHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHH
T ss_pred CCEEEEEeECH--HHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHH
Confidence 34566666665 3344444444444444444321 1123456899999998633 223 345568
Q ss_pred HHHHHcCCcEEEcCccccccc------cccC-cceeEeeccccc
Q 008488 494 LHAMRYGTVPIVASTGGLVDT------VEEG-FTGFQMGSFSVD 530 (564)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e~------v~~g-~~G~l~~~~~~~ 530 (564)
++.|.-|.-+|-+..|++.+. ++++ ..|...+-|..|
T Consensus 197 l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~E 240 (381)
T 3oet_A 197 IRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGE 240 (381)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccC
Confidence 889999999999998886653 2333 235555544444
No 155
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=33.17 E-value=38 Score=32.61 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|.+. ...-|-.+...+|+.+|+++|++|.++=..
T Consensus 4 ~kvI~v~s~----KGGvGKTT~a~nLA~~La~~G~~VlliD~D 42 (286)
T 2xj4_A 4 TRVIVVGNE----KGGAGKSTIAVHLVTALLYGGAKVAVIDLD 42 (286)
T ss_dssp CEEEEECCS----SSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC----CCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 466666643 123355667888999999999999998654
No 156
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=33.09 E-value=33 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=24.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||++++. +|.+| ..|+++|.++||+|.+++..
T Consensus 2 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTGG-------TGFLG---QYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 477776653 35544 45788999999999998865
No 157
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=32.82 E-value=43 Score=31.23 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=28.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|.+. ...-|-.+...+|+.+|+++|++|.++=..
T Consensus 2 ~~vi~v~s~----kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 2 ARIIVVTSG----KGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp CEEEEEECS----STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECC----CCCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 466666643 122356678889999999999999998654
No 158
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=32.67 E-value=33 Score=33.47 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.|||++.+. +|++| ..|++.|.++||+|.++...
T Consensus 13 ~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 13 MTRSALVTGI-------TGQDG---AYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp --CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cCCeEEEECC-------CChHH---HHHHHHHHHCCCeEEEEeCC
Confidence 4688877654 46665 45788899999999998765
No 159
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=32.32 E-value=62 Score=28.21 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=31.7
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..||++|-. +.+|....++..+++.|.+.|++|.++-..
T Consensus 4 ~~kv~IvY~-----S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYV-----SEYGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEEC-----TTSTTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEE-----CCChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 457777754 236999999999999999999999888654
No 160
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=32.28 E-value=1e+02 Score=30.51 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-.. + -++-..++.|.-|.-+|-+..|++.+
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd 239 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID 239 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC
Confidence 44688999999874332 2 24455888999999999888887654
No 161
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=32.22 E-value=30 Score=33.41 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=23.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++.+. +|++| ..|++.|.++||+|.++..+
T Consensus 2 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (315)
T 2ydy_A 2 NRRVLVTGA-------TGLLG---RAVHKEFQQNNWHAVGCGFR 35 (315)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHTTTCEEEEEC--
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHhCCCeEEEEccC
Confidence 467776654 46665 45788899999999988743
No 162
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=32.22 E-value=90 Score=30.94 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHhcCEEEEc--CCCCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~P--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++. ..-+. ++-..++.|.-|.-+|-+..|++.+
T Consensus 192 l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd 240 (331)
T 1xdw_A 192 LDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVD 240 (331)
T ss_dssp HHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccccc
Confidence 44688999999873 22233 3445888898899899888888654
No 163
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=32.21 E-value=37 Score=31.09 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=25.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. |.+-..+++.|.+.||+|.++..+
T Consensus 1 M~iiIiG~-----------G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG-----------ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC-----------HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC-----------CHHHHHHHHHHHhCCCeEEEEECC
Confidence 77777762 445567899999999999999765
No 164
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=31.96 E-value=52 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=24.0
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeCCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPRYD 129 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~~~ 129 (564)
+.+|||+++.+- .+..+..|..++.+ .+++|..+..+.+
T Consensus 10 ~~~~ri~vl~SG---------~gsnl~all~~~~~~~~~eI~~Vis~~~ 49 (215)
T 3da8_A 10 SAPARLVVLASG---------TGSLLRSLLDAAVGDYPARVVAVGVDRE 49 (215)
T ss_dssp CSSEEEEEEESS---------CCHHHHHHHHHSSTTCSEEEEEEEESSC
T ss_pred CCCcEEEEEEeC---------ChHHHHHHHHHHhccCCCeEEEEEeCCc
Confidence 357899998752 23456666666643 3458777766533
No 165
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=31.90 E-value=32 Score=33.12 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=25.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||++++. +|++| ..|+++|.++||+|.++...
T Consensus 7 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 7 KHRILITGG-------AGFIG---GHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHTTCCEEEECCC
T ss_pred CCeEEEECC-------CChHH---HHHHHHHHHCCCEEEEEecC
Confidence 567776654 35555 45888999999999999765
No 166
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=31.79 E-value=33 Score=33.76 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||++++. +|++| ..|++.|.++||+|.++...
T Consensus 24 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 24 SPKTWLITGV-------AGFIG---SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp SCCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4678877664 35555 45888899999999999865
No 167
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=31.69 E-value=23 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=25.5
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.+|. .++..|++.||+|+++..+
T Consensus 2 ~mkI~iiGa--------Ga~G~---~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGP--------GAVGT---TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECC--------SHHHH---HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEec
Confidence 589999984 56554 4677788889999999876
No 168
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.51 E-value=50 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=27.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|.+. ...-|-.+...+|+.+|+++|++|.++=..
T Consensus 18 ~~vI~v~s~----kGGvGKTT~a~nLA~~la~~G~~VlliD~D 56 (262)
T 2ph1_A 18 KSRIAVMSG----KGGVGKSTVTALLAVHYARQGKKVGILDAD 56 (262)
T ss_dssp SCEEEEECS----SSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC----CCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 566666542 112345567888999999999999998654
No 169
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=31.50 E-value=34 Score=33.08 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.|||++|+. |.+| ..++..|++.||+|+++..+
T Consensus 2 ~~m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAGA--------GAMG---SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECc--------CHHH---HHHHHHHHhCCCcEEEEECC
Confidence 3589999984 4433 34678889999999998754
No 170
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.48 E-value=2.3e+02 Score=23.72 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=68.3
Q ss_pred cCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH-----cC
Q 008488 429 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YG 500 (564)
Q Consensus 429 ~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma-----~G 500 (564)
+.+.+++|+-+.+ ..++.++.+-...+..+.. ..-+..++.+++.. -|++++=-.- +--|+-+++.+. ..
T Consensus 10 ~k~~rILiVDD~~-~~r~~l~~~L~~~G~~~v~-~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFS-TMRRIVKNLLRDLGFNNTQ-EADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCH-HHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCH-HHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3577888887644 4666677666665532222 22355555555554 4777764443 456888888875 46
Q ss_pred CcEEEcCccccc----cccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 501 TVPIVASTGGLV----DTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 501 ~PvI~s~~gg~~----e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|||.-..-+-. +..+-|.++|+ ..|.+++.|.++|...
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl----------~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYI----------VKPFTAATLKEKLDKI 130 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEE----------ESSCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEE----------ECCCCHHHHHHHHHHH
Confidence 787754433322 33456888998 7899999998887543
No 171
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=31.43 E-value=39 Score=33.44 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=25.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
.|||.||+ .||.| +..+++.|.++|++|.+.=
T Consensus 4 ~~~i~~iG--------iGg~G--ms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 4 MKHIHIIG--------IGGTF--MGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCEEEEES--------CCSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEE--------ECHHH--HHHHHHHHHhCCCEEEEEc
Confidence 57898888 47777 5568889999999999874
No 172
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=31.40 E-value=51 Score=32.15 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.++||+.|++. -| .-|-.++..+||.+|++.|.+|.+|-..
T Consensus 102 ~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 102 TENNILMITGA-TP---DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CSCCEEEEEES-SS---SSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 46788888763 12 3466778899999999999999999654
No 173
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=31.32 E-value=1.9e+02 Score=22.75 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=61.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma---~G~PvI 504 (564)
+.+++|+.+.+ ...+.++.+-...+..+. ..-+...+...+.. .|++++=... +.-|+.+++.+. ..+|+|
T Consensus 3 ~~~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEE-PVRKSLAFMLTMNGFAVK--MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 35677777654 345555555544443332 22344444444443 4777765443 345666666664 367776
Q ss_pred EcCc-cc---cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 505 VAST-GG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 505 ~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.... .. ..+.++.|..||+ ..|.+.+.|.++|...
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l----------~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFI----------EKPFEDTVIIEAIERA 118 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHhCHHHhe----------eCCCCHHHHHHHHHHH
Confidence 5433 22 3445567888998 6888999998877654
No 174
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=31.29 E-value=41 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.4
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++.|||++|+. |. +-..++..|++.||+|.++..+
T Consensus 21 m~mmkI~IIG~--------G~---mG~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 21 QSMTTYAIIGA--------GA---IGSALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp GGSCCEEEEEC--------HH---HHHHHHHHHHHTTCCEEEECTT
T ss_pred hcCCEEEEECC--------CH---HHHHHHHHHHhCCCEEEEEECC
Confidence 44589999984 33 3345888999999999985433
No 175
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=31.28 E-value=31 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGA------SSGLG---AELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEEST------TSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 676677632 46666 46889999999999888764
No 176
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=31.18 E-value=1.5e+02 Score=30.05 Aligned_cols=45 Identities=31% Similarity=0.317 Sum_probs=32.3
Q ss_pred HHHHHHhcCEEEEc--CCCC-------CCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 470 AHMIIAGADFILIP--SRFE-------PCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 470 ~~~il~~ADv~v~P--S~~E-------~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
+.++++.||++++. ..-+ -++-..++.|.-|..+|-+..|++.+.
T Consensus 161 l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~ 214 (380)
T 2o4c_A 161 LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN 214 (380)
T ss_dssp HHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred HHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH
Confidence 44689999999873 2223 234458888999998998888886553
No 177
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=31.07 E-value=38 Score=31.16 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCC--eEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh--~V~vitp~~ 128 (564)
.+|+|++.+. +||+| ..+++.|.++|+ +|.++..+.
T Consensus 17 ~~~~vlVtGa-------sg~iG---~~l~~~L~~~G~~~~V~~~~r~~ 54 (242)
T 2bka_A 17 QNKSVFILGA-------SGETG---RVLLKEILEQGLFSKVTLIGRRK 54 (242)
T ss_dssp TCCEEEEECT-------TSHHH---HHHHHHHHHHTCCSEEEEEESSC
T ss_pred cCCeEEEECC-------CcHHH---HHHHHHHHcCCCCCEEEEEEcCC
Confidence 3577776654 46766 447888999999 999987653
No 178
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=31.02 E-value=25 Score=34.15 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+|||++++. +|++| ..|++.|.++||+|.++..
T Consensus 2 ~~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 2 AKQRVFIAGH-------RGMVG---SAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp CCEEEEEETT-------TSHHH---HHHHHHHTTCTTEEEECCC
T ss_pred CCCEEEEECC-------CcHHH---HHHHHHHHhCCCeEEEEec
Confidence 4578776654 35555 4578889999999887653
No 179
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=30.96 E-value=38 Score=35.81 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=26.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
+|||++.+. +|.+| ..|++.|.++||+|.+++.+.
T Consensus 147 ~m~VLVTGa-------tG~IG---~~l~~~L~~~G~~V~~l~R~~ 181 (516)
T 3oh8_A 147 PLTVAITGS-------RGLVG---RALTAQLQTGGHEVIQLVRKE 181 (516)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECCC
Confidence 689887764 46655 457889999999999998653
No 180
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=30.91 E-value=2e+02 Score=22.79 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=61.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~P 502 (564)
..+++|+.+.+ ...+.++++-.+.+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+.. ..|
T Consensus 6 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 6 SKRILVVDDDQ-AMAAAIERVLKRDHWQVE--IAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CccEEEEECCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 45677776643 345555555555443332 2234444444443 35888776554 4567788887763 344
Q ss_pred EEEcCccc---cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 503 PIVASTGG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 503 vI~s~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|.+.... ..+.+..|..+|+ ..|.+.+.|.++|...
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYL----------EKPFDNDALLDRIHDL 122 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEE----------CSSCCHHHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHhChHHHh----------hCCCCHHHHHHHHHHH
Confidence 55443322 2344556888888 7899999998887643
No 181
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=30.79 E-value=94 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=24.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 28 ~k~vlVTGa------s~gIG---~aia~~l~~~G~~V~~~~r~ 61 (260)
T 3un1_A 28 QKVVVITGA------SQGIG---AGLVRAYRDRNYRVVATSRS 61 (260)
T ss_dssp CCEEEESSC------SSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCC------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 356666532 46666 46889999999999988765
No 182
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.70 E-value=49 Score=31.18 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=27.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+.|+.. ..-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 M~vI~vs~K-----GGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 1 MRQVAIYGK-----GGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp CEEEEEEEC-----TTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CcEEEEecC-----CCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 777777521 12355567789999999999999998554
No 183
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.67 E-value=51 Score=30.29 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=28.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||++.|.+. ...-|-.+...+|+.+|+++|++|.++-..
T Consensus 2 ~~~i~v~s~----kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 2 GRIISIVSG----KGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECS----STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEecC----CCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 366666542 112356678889999999999999999665
No 184
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=30.55 E-value=44 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+.+|++++. |.+-..+++.|.+.||+|.++.++
T Consensus 2 ~~~~vlI~G~-----------G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGH-----------SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECC-----------SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECC-----------CHHHHHHHHHHHHCCCCEEEEECC
Confidence 3567777652 334466888999999999999875
No 185
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.49 E-value=50 Score=31.96 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||+.|+ . - ..-|-.+...+|+.+|+++|.+|.++=..
T Consensus 39 ~~~~vI~v~-~-K---GGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVY-G-K---GGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEE-C-S---TTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCceEEEEE-C-C---CCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 367777776 3 1 23456678889999999999999999654
No 186
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=30.43 E-value=1.2e+02 Score=25.29 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=62.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH-----cCCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YGTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma-----~G~P 502 (564)
..+++|+.+.+ ...+.++++-...+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+|
T Consensus 7 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 7 AGEILIVEDSP-TQAEHLKHILEETGYQT--EHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEE--EEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCcEEEEeCCH-HHHHHHHHHHHHCCCEE--EEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 45677777654 34555555555544333 222355555455543 5888876554 456777887775 3577
Q ss_pred EEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|...... ..+.+..|..+|+ ..|.+.+.|..+|..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~ 123 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFI----------TKPCKDVVLASHVKR 123 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEE----------ESSCCHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHCCCCEEE----------eCCCCHHHHHHHHHH
Confidence 77543322 3344556788888 678888888776643
No 187
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=30.39 E-value=29 Score=31.46 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=23.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vi 124 (564)
..|++|+. .| .|+. +|..|+++|++|.|+
T Consensus 3 ~dV~IIGa--Gp----aGL~-----aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 3 VPIAIIGT--GI----AGLS-----AAQALTAAGHQVHLF 31 (336)
T ss_dssp CCEEEECC--SH----HHHH-----HHHHHHHTTCCEEEE
T ss_pred CCEEEECc--CH----HHHH-----HHHHHHHCCCCEEEE
Confidence 45888886 33 5666 888999999999998
No 188
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=30.37 E-value=1.7e+02 Score=28.61 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -+. ++-..++.|.-|.-+|-+..|++.+
T Consensus 190 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd 238 (307)
T 1wwk_A 190 LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD 238 (307)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccC
Confidence 3457899999987433 222 3445788899999999888887655
No 189
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=30.09 E-value=1.1e+02 Score=30.39 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHhcCEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 469 LAHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 469 ~~~~il~~ADv~v~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
.+.++++.||++++.-. -+ -++-..++.|.-|.-+|-+..|++.+
T Consensus 184 ~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 233 (324)
T 3evt_A 184 ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD 233 (324)
T ss_dssp GCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBC
T ss_pred CHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhh
Confidence 34568999999986432 22 34556888888899999998888654
No 190
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=30.08 E-value=32 Score=33.34 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=24.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|+|++++. +|++| ..++++|.++||+|.+++.+
T Consensus 4 ~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 4 MEKIIIYGG-------TGYIG---KFMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp CCCEEEETT-------TSTTH---HHHHHHHHHTTCCEEEEECC
T ss_pred ccEEEEEcC-------CchhH---HHHHHHHHhCCCcEEEEECC
Confidence 467776654 45555 34788899999999998865
No 191
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=30.03 E-value=1.7e+02 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=24.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|++. .+-.....+...++.++.-|.+|..+++.
T Consensus 1 ~mrilvINPn-----ts~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 1 SVRIQVINPN-----TSLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp CEEEEEECSS-----CCHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CCEEEEEeCC-----CCHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3999999964 22334444555555555556777777655
No 192
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.90 E-value=2.4e+02 Score=23.41 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=60.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH----hcCEEEEcCCC-CCCcHHHHHHHH---cCCcE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~----~ADv~v~PS~~-E~~gl~~lEAma---~G~Pv 503 (564)
.+++|+.+.+ ...+.++.+-...+..+.. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 37 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 37 FNVLIVDDSV-FTVKQLTQIFTSEGFNIID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred eEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 4666666543 3445555554444422321 2224444444444 34888876554 445666666654 36777
Q ss_pred EEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|...... ..+.+..|..+|+ ..|.+.+.|.++|...
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFI----------VKPLDRAKVLQRVMSV 154 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHT
T ss_pred EEEeccCcHHHHHHHHHcCCCEEE----------eCCCCHHHHHHHHHHH
Confidence 7554322 3344566788888 6888999998887653
No 193
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=29.86 E-value=54 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=28.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||++.|.+. ...-|-.+...+|+.+|+++|++|.++=..
T Consensus 2 ~~~I~v~s~----kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (263)
T 1hyq_A 2 VRTITVASG----KGGTGKTTITANLGVALAQLGHDVTIVDAD 40 (263)
T ss_dssp CEEEEEEES----SSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECC----CCCCCHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 455555542 112366678889999999999999999654
No 194
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=29.81 E-value=37 Score=33.50 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|+|++.+. +|++| ..|++.|.++||+|.++..+
T Consensus 8 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 8 QGKRVFVTGH-------TGFKG---GWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp TTCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECC-------CchHH---HHHHHHHHhCCCeEEEEeCC
Confidence 4678776654 46655 44788899999999998765
No 195
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=29.69 E-value=33 Score=33.44 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCC--CeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G--h~V~vitp~ 127 (564)
.+|||++.+. +|++| ..|++.|.++| |+|.++...
T Consensus 2 ~~m~vlVTGa-------tG~iG---~~l~~~L~~~g~~~~V~~~~r~ 38 (336)
T 2hun_A 2 HSMKLLVTGG-------MGFIG---SNFIRYILEKHPDWEVINIDKL 38 (336)
T ss_dssp -CCEEEEETT-------TSHHH---HHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCeEEEECC-------CchHH---HHHHHHHHHhCCCCEEEEEecC
Confidence 4688776654 46666 44778888886 888887643
No 196
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=29.67 E-value=1.3e+02 Score=30.39 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=32.7
Q ss_pred HHHHHHhcCEEEEcC--CCC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPS--RFE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS--~~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.- .-| -++-..++.|.-|.-+|-+..|++.+
T Consensus 224 l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 272 (365)
T 4hy3_A 224 LEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVD 272 (365)
T ss_dssp HHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSC
T ss_pred HHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhC
Confidence 456899999998632 223 34566888898999999998888654
No 197
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=29.65 E-value=35 Score=33.32 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=26.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||++++. | ....+++++.++||+|.++.+.
T Consensus 2 ~m~Ililg~---------g---~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYAS---------H---SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESS---------T---THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECC---------h---hHHHHHHHHHhCCCEEEEEECC
Confidence 689999884 2 3456899999999999999876
No 198
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=29.65 E-value=1.3e+02 Score=30.11 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=28.8
Q ss_pred HHHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 469 LAHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 469 ~~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
.+.++++.||++++.-. -+. ++-..++.|.-|..+|-+..|++.+
T Consensus 215 sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvd 264 (340)
T 4dgs_A 215 SPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVD 264 (340)
T ss_dssp SHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC----
T ss_pred CHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccC
Confidence 34568999999986433 233 3446888899999999888887554
No 199
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=29.51 E-value=60 Score=30.09 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=22.9
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~ 127 (564)
|||+++.+- .+..+..+..++.+. +++|..+..+
T Consensus 4 ~ki~vl~sG---------~g~~~~~~l~~l~~~~l~~~I~~Vit~ 39 (212)
T 3av3_A 4 KRLAVFASG---------SGTNFQAIVDAAKRGDLPARVALLVCD 39 (212)
T ss_dssp EEEEEECCS---------SCHHHHHHHHHHHTTCCCEEEEEEEES
T ss_pred cEEEEEEEC---------CcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 688887642 233566778888776 6888766654
No 200
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=29.41 E-value=41 Score=31.85 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.0
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 99 KTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 99 ~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|++| ..++++++++|++|++++..
T Consensus 27 SSG~mG---~aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 27 STGHLG---KIITETLLSAGYEVCLITTK 52 (232)
T ss_dssp CCCHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 356666 45899999999999999865
No 201
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=29.32 E-value=2.3e+02 Score=23.09 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=61.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH-------cC
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-------YG 500 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma-------~G 500 (564)
..+++|+.+.+ ...+.++.+-.+.+..+. ..-+.+++...+.. .|++++=... +.-|+.+++.+. ..
T Consensus 14 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 14 SMRMLVADDHE-ANRMVLQRLLEKAGHKVL--CVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp -CEEEEECSSH-HHHHHHHHHHHC--CEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred cceEEEEeCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 45777777643 345555555554443333 22244444444443 5888875443 455777777764 23
Q ss_pred CcEEEcCcccc----ccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 501 TVPIVASTGGL----VDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 501 ~PvI~s~~gg~----~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|+|......- .+....|..+|+ ..|.+.+.|.++|...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l----------~KP~~~~~L~~~l~~~ 133 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFL----------AKPVVAAKLLDTLADL 133 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhhee----------eCCCCHHHHHHHHHHH
Confidence 67766543332 334456788998 6888999998887654
No 202
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=29.32 E-value=37 Score=33.27 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=23.9
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.+|.. ++..|++.||+|+++..+
T Consensus 2 ~mkI~IiGa--------GaiG~~---~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGA--------GALGLY---YGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEECC--------STTHHH---HHHHHHHTSCCEEEECST
T ss_pred CCEEEEECc--------CHHHHH---HHHHHHHCCCeEEEEEcC
Confidence 489999985 444433 577888899999999875
No 203
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=29.31 E-value=2.2e+02 Score=22.90 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=61.7
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHHc-----CCcE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma~-----G~Pv 503 (564)
.+++|+.+.+ ...+.+..+-...+..+. ..-+..++...+.. .|++++=... +.-|+.+++.+.. .+|+
T Consensus 5 ~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 5 HTLLIVDDDD-TVAEMLELVLRGAGYEVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 4566666543 345555555555443332 22345554444443 4888875544 4557777777643 5777
Q ss_pred EEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|.....+ ..+.+..|..+|+ ..|.+.+.|..+|...
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l----------~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYL----------AKPFEPQELVYRVKNI 121 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEE----------ETTCCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCcceEE----------eCCCCHHHHHHHHHHH
Confidence 6543322 2334556888998 6888999888776543
No 204
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=29.28 E-value=40 Score=33.33 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=25.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|||+||+. |..| ..++..|++.||+|.++..+
T Consensus 13 ~~~kI~iIG~--------G~mG---~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGA--------GSWG---TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEECc--------CHHH---HHHHHHHHhCCCeEEEEeCC
Confidence 4799999984 4444 34778889999999998764
No 205
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=29.28 E-value=49 Score=30.40 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~ 127 (564)
++|+|++.+. +||+| ..+++.|.++ ||+|.++..+
T Consensus 3 ~~~~ilVtGa-------sG~iG---~~l~~~l~~~~~g~~V~~~~r~ 39 (253)
T 1xq6_A 3 NLPTVLVTGA-------SGRTG---QIVYKKLKEGSDKFVAKGLVRS 39 (253)
T ss_dssp SCCEEEEEST-------TSHHH---HHHHHHHHHTTTTCEEEEEESC
T ss_pred CCCEEEEEcC-------CcHHH---HHHHHHHHhcCCCcEEEEEEcC
Confidence 3566666553 46665 4578889898 8999988764
No 206
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=29.28 E-value=41 Score=32.95 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.+|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 26 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITGG-------AGFVG---SHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEcC-------ccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4577766553 46655 45788899999999998754
No 207
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=29.27 E-value=49 Score=29.57 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=31.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHh-CCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~-~Gh~V~vitp~ 127 (564)
|||++|... .+|-...++..+++.+.+ .|++|.++...
T Consensus 5 ~kiliiy~S-----~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 5 GKVLVIYDT-----RTGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp EEEEEEECC-----SSSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CEEEEEEEC-----CCcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 689998753 368888889999999998 99999988654
No 208
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=29.21 E-value=45 Score=32.40 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|+|++.+. +|++| ..|++.|.++||+|.++..+
T Consensus 10 ~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 10 EGSLVLVTGA-------NGFVA---SHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp TTCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECC-------ccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4677776654 46666 44788899999999988754
No 209
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=29.12 E-value=42 Score=28.61 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|||+++-. +.+|....+...+++.|.+.|++|.++-
T Consensus 2 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-----STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-----TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46666532 3579999999999999999999998773
No 210
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.87 E-value=65 Score=31.72 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=28.7
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
++|+++.|.+. ...-|-.++..+|+.+|+++|++|.++....
T Consensus 11 ~gm~~i~v~sg----KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 11 KGKTTFVFIGG----KGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TTBCEEEEEEE----STTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEEeC----CCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 36554444432 1123555677889999999999999998753
No 211
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=28.77 E-value=49 Score=30.05 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=31.4
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||+++-. +.+|....+...|+..|.+.|++|.++...
T Consensus 21 ~~kv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~ 59 (191)
T 1bvy_F 21 NTPLLVLYG-----SNMGTAEGTARDLADIAMSKGFAPQVATLD 59 (191)
T ss_dssp CCCEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCCCEEEEGG
T ss_pred CCeEEEEEE-----CCChHHHHHHHHHHHHHHhCCCceEEeeHH
Confidence 577776643 347999999999999999999999887654
No 212
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=28.73 E-value=46 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=26.0
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CCeEEEEeeCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh~V~vitp~~ 128 (564)
++.|||++++. +|.+| ..|+++|.++ ||+|.++....
T Consensus 22 m~~~~vlVtGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 22 MKAKKVLILGV-------NGFIG---HHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp -CCCEEEEESC-------SSHHH---HHHHHHHHHHSSCEEEEEESCC
T ss_pred cCCCEEEEECC-------CChHH---HHHHHHHHhCCCCEEEEEeCCh
Confidence 34577776664 46655 4577888887 99999998654
No 213
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=28.69 E-value=2e+02 Score=28.13 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-.. + -++-..++.|.-|..+|.+..|++.+
T Consensus 190 l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 238 (313)
T 2ekl_A 190 LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN 238 (313)
T ss_dssp HHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC
T ss_pred HHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC
Confidence 34578999999875432 2 23445788888898899888887655
No 214
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=28.63 E-value=56 Score=29.47 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHH-HHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPA-LAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~a-La~~Gh~V~vitp~ 127 (564)
|||++|... |. +.|-...++..+++. |.+.|++|.++-..
T Consensus 3 mkilii~gS--~r-~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 3 YSIVAISGS--PS-RNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp EEEEEEECC--SS-TTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred ceEEEEECC--CC-CCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 799999864 42 345567777778888 88889999888643
No 215
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=28.37 E-value=2.5e+02 Score=23.03 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma~---G~PvI 504 (564)
-.+++|+.+.+ ...+.++.+-...+........-+.+++...+.. .|++++=... +.-|+.+++.+.. .+|+|
T Consensus 20 m~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQS-MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 35666776543 3455555555444321222222244444444443 5777775543 4567777776654 66766
Q ss_pred EcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 505 VASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
.-.... ..+.+..|..+|+ ..|.+.+.|.++|....
T Consensus 99 ~ls~~~~~~~~~~~~~~g~~~~l----------~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGVDAYV----------LKERSIADLMQTLHTVL 138 (150)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEE----------ETTSCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHCCCcEEE----------ecCCCHHHHHHHHHHHH
Confidence 554332 3445567888998 68888999888775443
No 216
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.31 E-value=64 Score=30.66 Aligned_cols=42 Identities=14% Similarity=-0.028 Sum_probs=29.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||++|+.. |. +.|-....+..++..+.+.|++|.++-..
T Consensus 33 ~~mkIliI~GS--~r-~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 33 HRPRILILYGS--LR-TVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp SCCEEEEEECC--CC-SSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred CCCeEEEEEcc--CC-CCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 46999999974 43 22333455566777888889999988543
No 217
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=28.15 E-value=2.2e+02 Score=22.52 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=59.4
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH--HhcCEEEEcCCC-CCCcHHHHHHHHc---CCcEEE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPIV 505 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il--~~ADv~v~PS~~-E~~gl~~lEAma~---G~PvI~ 505 (564)
++++|+.+.+ ...+.++.+-.+.+..+.... -+.+++...+ ...|++++-... +.-|+.+++.+.. .+|+|.
T Consensus 2 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~~-~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHP-LAIAAIRNLLIKNDIEILAEL-TEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCH-HHHHHHHHHHHHTTEEEEEEE-SSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCH-HHHHHHHHHHhhCCcEEEEEc-CCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 4667777654 355566665555542232111 1222222233 346888876554 4567777776653 566665
Q ss_pred cCcc----ccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 506 ASTG----GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 506 s~~g----g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.... ...+.+..|..+++ ..|.+.+.|.++|...
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~i~~~ 117 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFV----------SKKEGMNNIIAAIEAA 117 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEE----------EGGGCTHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhCCCEEE----------eCCCCHHHHHHHHHHH
Confidence 4322 23344566788888 5777888887776543
No 218
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=27.98 E-value=2e+02 Score=29.43 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCEEEEcCCCCC------CcHHHHHHHHcCCcEEEcC--cccccccccc
Q 008488 468 PLAHMIIAGADFILIPSRFEP------CGLIQLHAMRYGTVPIVAS--TGGLVDTVEE 517 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E~------~gl~~lEAma~G~PvI~s~--~gg~~e~v~~ 517 (564)
..+.+.++.||++|......+ +.--.++.|.-|..+|-.. .||..|+.+.
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~ 324 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEA 324 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCT
T ss_pred hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCC
Confidence 356678999999997643221 3456888899999888664 6888877543
No 219
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=27.93 E-value=1.5e+02 Score=28.06 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=42.5
Q ss_pred EEEEEeC-CChhhHHHHHHHHHhCC-CceEEEeccChHHHHHHHH-hcCEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 008488 433 QIIVLGT-GKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (564)
Q Consensus 433 ~lvIvG~-g~~~~~~~l~~L~~~~~-~~v~~~~~~~~~~~~~il~-~ADv~v~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (564)
++.|+|. |. +-+.+.+.....+ ..+......+. .+..++. .+|++|=-+.-+..--.+..+...|+|+|+..+|
T Consensus 2 kV~V~Ga~G~--mG~~i~~~~~~~~~~elva~~d~~~-dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGK--VGTTMVRAVAAADDLTLSAELDAGD-PLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSH--HHHHHHHHHHHCTTCEEEEEECTTC-CTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCEEEEEEccCC-CHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5778884 65 4444544444433 23333332222 1223444 7898884444444433344568889999887776
Q ss_pred cccc
Q 008488 510 GLVD 513 (564)
Q Consensus 510 g~~e 513 (564)
-..|
T Consensus 79 ~~~e 82 (245)
T 1p9l_A 79 FTAE 82 (245)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5444
No 220
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=27.92 E-value=40 Score=33.99 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=26.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||++|+. |.+| ..++..|++.||+|.++..+
T Consensus 28 ~~mkI~VIGa--------G~mG---~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAILGA--------GSWG---TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCSCEEEECC--------SHHH---HHHHHHHHTTTCCEEEECSC
T ss_pred cCCeEEEECc--------cHHH---HHHHHHHHHCCCeEEEEeCC
Confidence 4699999985 3333 34788899999999998764
No 221
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=27.85 E-value=1.2e+02 Score=29.68 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=30.7
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-.. + -++-..++.|.-|.-+|-+..|++.+
T Consensus 187 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd 235 (311)
T 2cuk_A 187 LEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD 235 (311)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccC
Confidence 45689999999875322 2 23334677788888888888887655
No 222
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.78 E-value=2.5e+02 Score=22.97 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=63.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH---------hcCEEEEcCCC-CCCcHHHHHHHHc-
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMRY- 499 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~---------~ADv~v~PS~~-E~~gl~~lEAma~- 499 (564)
..+++|+.+.+ ...+.++.+-...+........-+..++...+. ..|++++=-.. +.-|+.+++.+..
T Consensus 8 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSK-ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCH-HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 45677777643 355566665554432122222224455545555 36888875444 3457777777753
Q ss_pred ----CCcEEEcCc-cc---cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 500 ----GTVPIVAST-GG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 500 ----G~PvI~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+|+|.-.. .. ..+.++.|..||+ ..|.+.+.|.++|...
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l----------~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYL----------TKSRNLKDLFKMVQGI 134 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE----------ECCSSHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEE----------ECCCCHHHHHHHHHHH
Confidence 567665432 22 3444566888998 6888899988877553
No 223
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=27.78 E-value=39 Score=32.59 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=22.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++.+. +|++| ..+++.|.++||+|.++..
T Consensus 1 m~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 1 MRVLVTGG-------AGFIG---SHIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHTTTCEEEEECC
T ss_pred CEEEEEeC-------CcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 67665543 35555 4578899999999988754
No 224
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.73 E-value=2e+02 Score=21.83 Aligned_cols=104 Identities=11% Similarity=-0.020 Sum_probs=59.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHH-----cCCcEE
Q 008488 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 504 (564)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma-----~G~PvI 504 (564)
+++|+.+.+ ...+.+.++-...+.++.. .-+.+++...+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 3 ~iliv~~~~-~~~~~l~~~l~~~g~~v~~--~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 3 HILLLEEED-EAATVVCEMLTAAGFKVIW--LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp EEEEECCCH-HHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred EEEEEeCCH-HHHHHHHHHHHhCCcEEEE--ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 566666544 3445555554444433432 224444433333 35888775544 445677777775 457766
Q ss_pred EcC-ccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 505 VAS-TGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 505 ~s~-~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
... .....+....|..+++ ..|.+.+.+.++|...
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 80 LFLGEPPVDPLLTAQASAIL----------SKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEESSCCSSHHHHHHCSEEC----------SSCSTTHHHHHHHHTT
T ss_pred EEeCCCCchhhhhcCHHHhc----------cCCCCHHHHHHHHHHH
Confidence 543 2222255556677777 6788888888887654
No 225
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.73 E-value=82 Score=25.60 Aligned_cols=44 Identities=7% Similarity=-0.104 Sum_probs=32.3
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCCccc
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK 132 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~~~~ 132 (564)
..|||+.++.. .-|.+.++..+-+++.++|.++.+.........
T Consensus 2 ~mkkIll~Cg~------G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~ 45 (106)
T 1e2b_A 2 EKKHIYLFSSA------GMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG 45 (106)
T ss_dssp CCEEEEEECSS------STTTHHHHHHHHHHHHHSCCSEEEEEECSSSTT
T ss_pred CCcEEEEECCC------chhHHHHHHHHHHHHHHCCCCeEEEEecHHHHH
Confidence 34689999974 224456777888889999999998877655443
No 226
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.49 E-value=2.3e+02 Score=22.46 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=61.4
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHH-H--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII-A--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il-~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~P 502 (564)
.+++|+.+.+ ...+.++++-.+.+.... ....+..+....+ . ..|++++=... +.-|+.+++.+.. .+|
T Consensus 6 ~~iLivdd~~-~~~~~l~~~L~~~g~~~v-~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 6 MKLLVVDDSS-TMRRIIKNTLSRLGYEDV-LEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp CCEEEECSCH-HHHHHHHHHHHHTTCCCE-EEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred cEEEEEeCCH-HHHHHHHHHHHHcCCcEE-EEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 4567776643 355566665555543212 1222343333333 2 35787764443 4567888887764 567
Q ss_pred EEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
+|...... ..+.+..|..+|+ ..|.+++.|.++|..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYI----------VKPFTPQVLKEKLEV 123 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEE----------ESCCCHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHcCccEEE----------eCCCCHHHHHHHHHH
Confidence 76543322 2344566888998 688899999887754
No 227
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=27.33 E-value=36 Score=29.94 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=27.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||+++-. +.+|....+...+++.|.+.|++|.++..
T Consensus 10 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 46 (167)
T 1ykg_A 10 PGITIISA-----SQTGNARRVAEALRDDLLAAKLNVKLVNA 46 (167)
T ss_dssp --CEEEEE-----CSSSHHHHHHHHHHHHHHHHTCCCEEEEG
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEeeh
Confidence 46666543 34799999999999999999999888754
No 228
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=27.22 E-value=39 Score=33.45 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||++|+. |.+|. .++..|++.||+|+++...
T Consensus 2 ~~mkI~IiGa--------G~~G~---~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 2 SLTRICIVGA--------GAVGG---YLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCCEEEESC--------CHHHH---HHHHHHHHTTCCEEEECCH
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHHCCCEEEEEECh
Confidence 4699999984 55443 3677888999999999863
No 229
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=27.14 E-value=40 Score=30.30 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=25.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCC--eEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh--~V~vitp~ 127 (564)
+|||++++. +|++| ..+++.|.++|+ +|.+++.+
T Consensus 5 ~~~vlVtGa-------tG~iG---~~l~~~l~~~g~~~~V~~~~r~ 40 (215)
T 2a35_A 5 PKRVLLAGA-------TGLTG---EHLLDRILSEPTLAKVIAPARK 40 (215)
T ss_dssp CCEEEEECT-------TSHHH---HHHHHHHHHCTTCCEEECCBSS
T ss_pred CceEEEECC-------CcHHH---HHHHHHHHhCCCCCeEEEEeCC
Confidence 578877664 46655 457888999998 88887755
No 230
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=27.09 E-value=51 Score=30.95 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=25.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||.||+. |.+| ..++..|++.||+|.++..+
T Consensus 18 ~~~kIgiIG~--------G~mG---~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 18 QGMKIAVLGT--------GTVG---RTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp -CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCeEEEECC--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4799999984 3333 44788999999999988654
No 231
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=26.98 E-value=43 Score=33.67 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=27.8
Q ss_pred ceEEEEEeeccCccccch--HHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG--~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+-|.+. .|| -.+...+|+.+|+++|.+|.+|=..
T Consensus 1 MkvIav~s~------KGGvGKTT~a~nLA~~LA~~G~rVLlID~D 39 (361)
T 3pg5_A 1 MRTISFFNN------KGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39 (361)
T ss_dssp CEEEEBCCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 777776643 344 4556777999999999999999654
No 232
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.97 E-value=2.4e+02 Score=22.48 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=62.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~---G~PvI 504 (564)
..+++|+.+.+ ...+.++++-......+... -+..++...+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~~~~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDT-DAREWLSTIISNHFPEVWSA--GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCH-HHHHHHHHHHHTTCSCEEEE--SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCH-HHHHHHHHHHHhcCcEEEEE--CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 45777877654 34455555554433233322 23444433443 45888876554 4557777766653 67777
Q ss_pred EcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 505 VASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
...... ..+.+..|..+|+ ..|.+.+.|.++|...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFL----------PKPIEPGRLMETLEDF 122 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEEC----------CSSCCHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeE----------cCCCCHHHHHHHHHHH
Confidence 654433 3344566788887 7888999998887543
No 233
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=26.90 E-value=40 Score=32.42 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=27.1
Q ss_pred CceEEEEEeeccCccccchHHH---HhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGD---VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~---~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|||+++.....+ .... ....+++++.++||+|.++.+.
T Consensus 2 ~~~i~il~gg~s~-----e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSA-----EREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSST-----THHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCc-----cceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 5899999853111 1111 2356999999999999999875
No 234
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.83 E-value=68 Score=31.72 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||+|+++ |. +.....++|.+.||+|..+...
T Consensus 1 ~~mrivf~Gt---p~--------fa~~~L~~L~~~~~~v~~Vvt~ 34 (314)
T 3tqq_A 1 MSLKIVFAGT---PQ--------FAVPTLRALIDSSHRVLAVYTQ 34 (314)
T ss_dssp CCCEEEEEEC---SG--------GGHHHHHHHHHSSSEEEEEECC
T ss_pred CCcEEEEECC---CH--------HHHHHHHHHHHCCCeEEEEEeC
Confidence 4799999995 32 2223457788889998766654
No 235
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=26.75 E-value=47 Score=32.50 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=24.4
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 2 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (348)
T 1ek6_A 2 AEKVLVTGG-------AGYIG---SHTVLELLEAGYLPVVIDNF 35 (348)
T ss_dssp CSEEEEETT-------TSHHH---HHHHHHHHHTTCCEEEEECS
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEecC
Confidence 467766553 46655 45788899999999998653
No 236
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=26.64 E-value=36 Score=32.64 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=24.4
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++++. +|++| ..++++|.++||+|.+++.+
T Consensus 2 ~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 2 ENKILILGP-------TGAIG---RHIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp CCCEEEEST-------TSTTH---HHHHHHHHHHTCCEEEEECC
T ss_pred CcEEEEECC-------CchHH---HHHHHHHHhCCCcEEEEECC
Confidence 467776664 46655 34778888899999988765
No 237
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=26.51 E-value=1.1e+02 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 469 LAHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 469 ~~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
.+.++++.||++++.-. -+. ++-..++.|.-|..+|-+..|++.+
T Consensus 166 ~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd 215 (290)
T 3gvx_A 166 SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVS 215 (290)
T ss_dssp SHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBC
T ss_pred ChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccC
Confidence 45568999999987433 233 4556788888899999888887544
No 238
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.37 E-value=52 Score=30.26 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=25.2
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 2 ~k~vlITGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGA------SRGIG---EAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESC------SSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 677777642 46666 46899999999999888754
No 239
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=26.09 E-value=1.9e+02 Score=26.57 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=22.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeCCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRYD 129 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~~~ 129 (564)
|||+++.+- .|..+..|..++.+. +++|..+..+.+
T Consensus 1 ~riaVl~SG---------~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~ 38 (209)
T 1meo_A 1 ARVAVLISG---------TGSNLQALIDSTREPNSSAQIDIVISNKA 38 (209)
T ss_dssp CEEEEEESS---------SCTTHHHHHHHHHSTTCSCEEEEEEESST
T ss_pred CeEEEEEEC---------CchHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 578887752 223466666666554 789877766533
No 240
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=25.96 E-value=68 Score=31.05 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.++||+.|++. -| .-|-..+..+||.+|++.|.+|.+|-..
T Consensus 90 ~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 90 AQNNVLMMTGV-SP---SIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp TTCCEEEEEES-SS---SSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 35677777754 22 3467778899999999999999999654
No 241
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=25.77 E-value=2.6e+02 Score=25.75 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=38.2
Q ss_pred HhcCEEEEcCCC-C----CCcHHHHHHHH--cCCcEEEcCc-c---ccccccccCcceeEeeccccccccCCCCCHHHHH
Q 008488 475 AGADFILIPSRF-E----PCGLIQLHAMR--YGTVPIVAST-G---GLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVI 543 (564)
Q Consensus 475 ~~ADv~v~PS~~-E----~~gl~~lEAma--~G~PvI~s~~-g---g~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa 543 (564)
.+++.+++++.. + +..+..++.+. .++|+|+... . -+.++.+-|..|+++|..... .+.+++++.
T Consensus 164 ~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~----~~~~~~~~~ 239 (252)
T 1ka9_F 164 LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF----GEIPIPKLK 239 (252)
T ss_dssp HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT----TSSCHHHHH
T ss_pred cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc----CCCCHHHHH
Confidence 348877766532 2 33466665554 3899998631 1 133445557788887643332 344666665
Q ss_pred hhc
Q 008488 544 PRI 546 (564)
Q Consensus 544 ~aI 546 (564)
+.+
T Consensus 240 ~~l 242 (252)
T 1ka9_F 240 RYL 242 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 242
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=25.72 E-value=50 Score=31.41 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=24.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|+. |.+| ..++..|++.||+|+++..+
T Consensus 1 m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLGC--------GALG---QLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECc--------CHHH---HHHHHHHHhCCCCEEEEEcC
Confidence 78998874 4433 35788899999999998765
No 243
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=25.71 E-value=2.6e+02 Score=22.36 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=61.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHh-CCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~-~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~ 501 (564)
..+++|+.+.+ ...+.+..+-.. .+..+. ...-+.+++...+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 8 ~~~iLivdd~~-~~~~~l~~~L~~~~~~~~v-~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 8 DFSILIIEDDK-EFADMLTQFLENLFPYAKI-KIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHHCTTCEE-EEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CceEEEEECCH-HHHHHHHHHHHhccCccEE-EEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 45777777654 345555555444 443312 12223444444444 35888876554 4457777777754 56
Q ss_pred cEEEcCc-cc---cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 502 VPIVAST-GG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 502 PvI~s~~-gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
|+|.... .. ..+.+..|..+++ ..|.+.+.|.++|...
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 127 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCF----------GKPLNFTLLEKTIKQL 127 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEE----------eCCCCHHHHHHHHHHH
Confidence 7765432 22 2344556788888 6788888888877543
No 244
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=25.68 E-value=51 Score=31.11 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=28.6
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||+.|.+. ...-|-.+...+|+.+|+ +|.+|.++=..
T Consensus 25 ~~~~vI~v~s~----kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 25 KKPKIITIASI----KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp -CCEEEEECCS----SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCeEEEEEeC----CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 46787777653 122345577888999999 99999999665
No 245
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=25.41 E-value=59 Score=32.26 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|++|||+|+++ |. +.....++|.+.||+|..+...
T Consensus 5 ~~~mrivf~Gt---~~--------fa~~~L~~L~~~~~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGT---PD--------FAARHLAALLSSEHEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECC---SH--------HHHHHHHHHHTSSSEEEEEECC
T ss_pred ccCCEEEEEec---CH--------HHHHHHHHHHHCCCcEEEEEcC
Confidence 35799999995 32 2333456777889998766654
No 246
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.36 E-value=2.6e+02 Score=22.41 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=63.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCC--ceEEEeccChHHHHHHHH------------hcCEEEEcCCC-CCCcHHHHH
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIA------------GADFILIPSRF-EPCGLIQLH 495 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~--~v~~~~~~~~~~~~~il~------------~ADv~v~PS~~-E~~gl~~lE 495 (564)
..+++|+.+.+ ...+.++.+-.+.+. .+. ..-+..++...+. ..|++++=... +.-|+.+++
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~L~~~g~~~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 6 TQPLLVVEDSD-EDFSTFQRLLQREGVVNPIY--RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp TSCEEEECCCH-HHHHHHHHHHHHTTBCSCEE--EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CccEEEEECCH-HHHHHHHHHHHHcCCCceEE--EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 45677777654 345555555555443 232 2224455545554 35888876554 446777787
Q ss_pred HHH-----cCCcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 496 AMR-----YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 496 Ama-----~G~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.+. ..+|+|...... ..+.+..|..+++ ..|.+.+.|.++|...
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l----------~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYI----------VKPLEIDRLTETVQTF 135 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEE----------ECCSSHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEE----------eCCCCHHHHHHHHHHH
Confidence 775 456766543322 3344556778888 6788888888777543
No 247
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.28 E-value=68 Score=29.97 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=30.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh~V~vitp~ 127 (564)
|||++|... |. +.|-...++..++..|.+. |++|.++-..
T Consensus 2 mkIliI~gS--~r-~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGV--RN-HNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECC--CC-TTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECC--CC-CCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 799999874 53 3355666777788888887 9999988654
No 248
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=25.26 E-value=93 Score=30.87 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCEEEEcC--CCCCC---cHHHHHHHHcCCcEEEcCccccccc
Q 008488 468 PLAHMIIAGADFILIPS--RFEPC---GLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS--~~E~~---gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
..+.++++.||++++.- .-+.. +-..+..|.-|.-+|-+..|++.+.
T Consensus 186 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde 237 (324)
T 3hg7_A 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237 (324)
T ss_dssp GGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCH
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCH
Confidence 34567899999998642 22333 3346777888999999988886653
No 249
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=25.25 E-value=54 Score=34.13 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=31.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhC--CCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~--Gh~V~vitp~~ 128 (564)
+|+|+++. +| ..|--.=+-.|++.|+++ ||+|+++++..
T Consensus 9 ~~~vv~~p---~p---~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIP---AP---GIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp CEEEEEEC---CS---STTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCEEEEEc---Cc---ccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 58898887 34 356556777899999998 99999998764
No 250
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=25.10 E-value=48 Score=32.29 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=22.8
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++.+. +|++| ..+++.|.++||+|.++..
T Consensus 1 m~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~~ 32 (338)
T 1udb_A 1 MRVLVTGG-------SGYIG---SHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEec
Confidence 66665543 45655 4578899999999998753
No 251
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=25.00 E-value=3e+02 Score=28.61 Aligned_cols=100 Identities=13% Similarity=-0.006 Sum_probs=56.1
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhccc----CCeEEEEEeCCChhhHHHHHHHHHh------CCCceEEEec-c-----
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEIL------YPEKARGVAK-F----- 465 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~----~~v~lvIvG~g~~~~~~~l~~L~~~------~~~~v~~~~~-~----- 465 (564)
..+++|.|.=.- +.. ..++..++-+ .++ -+|.|+|+.-|+...+..... .++.++++.. +
T Consensus 145 ~~ivVv~GSs~~--~~~-~Ye~A~eLGr~LA~~G~-~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~E 220 (460)
T 3bq9_A 145 PNMVVCWGGHSI--NEI-EYKYTKDVGYHIGLRGL-NICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAE 220 (460)
T ss_dssp SCEEEEECCSSC--CHH-HHHHHHHHHHHHHHTTC-EEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTS
T ss_pred CCEEEEEcCCCC--CCH-HHHHHHHHHHHHHHCCC-EEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhhh
Confidence 346777776432 112 2244443322 455 456676666565655555444 2344555431 1
Q ss_pred ------------C--hHHHHHHHHhcCEEEEcCCCCCCcHH--HHHHHH---------cCCcEEEcC
Q 008488 466 ------------N--IPLAHMIIAGADFILIPSRFEPCGLI--QLHAMR---------YGTVPIVAS 507 (564)
Q Consensus 466 ------------~--~~~~~~il~~ADv~v~PS~~E~~gl~--~lEAma---------~G~PvI~s~ 507 (564)
+ .+-...++..||.+|.-. -++|+- ++|++. .++|+|..+
T Consensus 221 ~~N~~vtelIiv~~m~eRK~~mv~~SDAfIaLP--GG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg 285 (460)
T 3bq9_A 221 PPNPIVNELVILPDIEKRLEAFVRCAHGIVIFP--GGAGTAEELLYLLGILMHPDNQRQSLPVILTG 285 (460)
T ss_dssp CCCTTCSEEEECSSHHHHHHHHHHHCSEEEECS--CSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEE
T ss_pred hcCCCCCeEEEECCHHHHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHhhccccCCCCCEEEEe
Confidence 0 122234778999988743 467776 788777 588999986
No 252
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=24.93 E-value=86 Score=27.82 Aligned_cols=40 Identities=0% Similarity=0.003 Sum_probs=28.1
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC------CCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN------GHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~------Gh~V~vitp~ 127 (564)
|||++|... |. +.|-...++..++..+.+. |++|.++-..
T Consensus 1 Mkilii~gS--~r-~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~ 46 (191)
T 1t0i_A 1 MKVGIIMGS--VR-AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQ 46 (191)
T ss_dssp CEEEEEECC--CC-SSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHH
T ss_pred CeEEEEeCC--CC-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEehh
Confidence 899999974 43 2344555666677777776 7999988643
No 253
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=24.75 E-value=1.3e+02 Score=30.02 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHhcCEEEEcC--CCC---CCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 470 AHMIIAGADFILIPS--RFE---PCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 470 ~~~il~~ADv~v~PS--~~E---~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
+.++++.||++++.- .-+ -++-..+..|.-|.-+|-+..|++.+.
T Consensus 209 l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~ 258 (352)
T 3gg9_A 209 KDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEE 258 (352)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCT
T ss_pred HHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcH
Confidence 446899999998633 223 345567888888999999988886553
No 254
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=24.71 E-value=83 Score=30.17 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=27.4
Q ss_pred ceEEEEEeeccCccccchH-HHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|... |. .+|. ..++..+...|.+.||+|.++-..
T Consensus 3 mkiLiI~gS--pr--~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 3 RRALIVLAH--SE--RTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CEEEEEEeC--CC--CccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 799999974 53 2343 344555677788899999998654
No 255
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=24.63 E-value=2.6e+02 Score=27.13 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=61.2
Q ss_pred EEEEEecccccc-CHHHHHHHHHhcccCCeEEEEEeCCC---hhhHHHHHHHHHhCCC-ceEEEec-----cChHHHHHH
Q 008488 404 VIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPE-KARGVAK-----FNIPLAHMI 473 (564)
Q Consensus 404 ~i~~iGrl~~~K-G~d~ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~L~~~~~~-~v~~~~~-----~~~~~~~~i 473 (564)
.++.+|.=+..+ +.+++-+.++....++.+++++.+.. +.+.+...+.-.+++- .+..+.- .+.+...+.
T Consensus 28 ~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~ 107 (291)
T 3en0_A 28 AILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLF 107 (291)
T ss_dssp CEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHH
T ss_pred eEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHH
Confidence 456666655433 34444444554433567888886533 2233333333333343 3433322 234555668
Q ss_pred HHhcCEEEEcC--------CCCCCcH--HHHHHHHcC-CcEEEcCcccc
Q 008488 474 IAGADFILIPS--------RFEPCGL--IQLHAMRYG-TVPIVASTGGL 511 (564)
Q Consensus 474 l~~ADv~v~PS--------~~E~~gl--~~lEAma~G-~PvI~s~~gg~ 511 (564)
+..||++.++- .+...++ .+.|+...| +|++.++.|.+
T Consensus 108 l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~ 156 (291)
T 3en0_A 108 VEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAA 156 (291)
T ss_dssp HHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHH
T ss_pred HhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHH
Confidence 99999999873 1233333 377777889 99999987753
No 256
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=24.63 E-value=59 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=24.8
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHH-hCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALA-ANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa-~~Gh~V~vitp~ 127 (564)
+|+|++.+. +|++| ..|++.|. ++||+|.++...
T Consensus 2 ~m~vlVTGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r~ 36 (397)
T 1gy8_A 2 HMRVLVCGG-------AGYIG---SHFVRALLRDTNHSVVIVDSL 36 (397)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHHCCCEEEEEECC
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHhCCCEEEEEecC
Confidence 588776653 46655 45788888 999999988754
No 257
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.62 E-value=2.3e+02 Score=23.24 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=60.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma---~G~PvI 504 (564)
..+++|+.+.+ ...+.+..+-...+..+. ..-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+|
T Consensus 7 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 7 NYTVMLVDDEQ-PILNSLKRLIKRLGCNII--TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 56777777654 345555555544443332 23344555445543 5888875544 345666666654 367776
Q ss_pred EcCccc----cccccccC-cceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 505 VASTGG----LVDTVEEG-FTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 505 ~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.-.... ..+.+..| ..+++ ..|.+.+.|.++|...
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l----------~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFL----------LKPWEDEDVFKVVEKG 123 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheee----------eCCCCHHHHHHHHHHH
Confidence 543322 23334445 67887 6788888887776543
No 258
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=24.62 E-value=73 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=26.1
Q ss_pred cccccCCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 77 ~~~~~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|...-.++|||++=+. .+|.+ .=..|...|.++||+|.=+.+.
T Consensus 13 ~~~~~~~~MkIaIgsD-------haG~~-lK~~i~~~L~~~G~eV~D~G~~ 55 (169)
T 3ph3_A 13 GLVPRGSHMKIGIGSD-------HGGYN-LKREIADFLKKRGYEVIDFGTH 55 (169)
T ss_dssp --------CEEEEEEC-------GGGHH-HHHHHHHHHHHTTCEEEECCCC
T ss_pred CCcccCCCCEEEEEeC-------chHHH-HHHHHHHHHHHCCCEEEEcCCC
Confidence 3333456899887775 36666 4556888899999999776553
No 259
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=24.58 E-value=2.1e+02 Score=26.38 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=40.5
Q ss_pred HHHHHHHHh-cCEEEEcCCC-----CCCcHHHHHHHHc--CCcEEEcCc----ccccccccc---CcceeEeeccccccc
Q 008488 468 PLAHMIIAG-ADFILIPSRF-----EPCGLIQLHAMRY--GTVPIVAST----GGLVDTVEE---GFTGFQMGSFSVDVI 532 (564)
Q Consensus 468 ~~~~~il~~-ADv~v~PS~~-----E~~gl~~lEAma~--G~PvI~s~~----gg~~e~v~~---g~~G~l~~~~~~~~~ 532 (564)
+.+..+... +|.+++.++. .++.+..++.+.- .+|+|+... .-+.++.+. |..|+++|.....
T Consensus 153 e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~-- 230 (244)
T 2y88_A 153 DVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYA-- 230 (244)
T ss_dssp HHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT--
T ss_pred HHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHC--
Confidence 333434443 7877766542 3456666666544 788888621 123335555 7788887644322
Q ss_pred cCCCCCHHHHHhh
Q 008488 533 YSSPSYNSRVIPR 545 (564)
Q Consensus 533 ~v~~~d~~aLa~a 545 (564)
.|.+..++.+.
T Consensus 231 --~~~~~~~~~~~ 241 (244)
T 2y88_A 231 --RRFTLPQALAA 241 (244)
T ss_dssp --TSSCHHHHHHH
T ss_pred --CCcCHHHHHHH
Confidence 44455554443
No 260
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=24.54 E-value=63 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.6
Q ss_pred HhhhhHHHHHhCCCeEEEEeeC
Q 008488 106 VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 106 ~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+-..+|+++.++|++|++++..
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 3456899999999999999875
No 261
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=24.53 E-value=2.2e+02 Score=28.26 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=64.7
Q ss_pred ecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHH-hCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCC
Q 008488 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE-VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN 431 (564)
Q Consensus 353 I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~ 431 (564)
|.||-+ +.++|... ..+--.++++ +|-+. +...|.|+|-. ...=..-++.++..+ +
T Consensus 124 VINa~~-~~~HPtQ~----------------LaDl~Ti~e~~~g~~l--~gl~ia~vGD~-~~~va~Sl~~~~~~~---G 180 (333)
T 1duv_G 124 VWNGLT-NEFHPTQL----------------LADLLTMQEHLPGKAF--NEMTLVYAGDA-RNNMGNSMLEAAALT---G 180 (333)
T ss_dssp EEESCC-SSCCHHHH----------------HHHHHHHHHHSTTCCG--GGCEEEEESCT-TSHHHHHHHHHHHHH---C
T ss_pred eEcCCC-CCCCchHH----------------HHHHHHHHHHhcCCCC--CCcEEEEECCC-ccchHHHHHHHHHHc---C
Confidence 557776 67777431 1223355666 66211 23689999997 222356677777777 7
Q ss_pred eEEEEEeCCC----hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCC
Q 008488 432 VQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (564)
Q Consensus 432 v~lvIvG~g~----~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~ 485 (564)
+.+.+++... +++.+.+++.+++.+.++... . .+.+.+.+||++.....
T Consensus 181 ~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~--d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 181 LDLRLVAPQACWPEAALVTECRALAQQNGGNITLT---E--DVAKGVEGADFIYTDVW 233 (333)
T ss_dssp CEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE---S--CHHHHHTTCSEEEECCS
T ss_pred CEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---E--CHHHHhCCCCEEEeCCc
Confidence 8999998632 234555666666666545433 1 22357899999987655
No 262
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.39 E-value=79 Score=28.65 Aligned_cols=24 Identities=25% Similarity=0.068 Sum_probs=20.6
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEE
Q 008488 101 GGLGDVLGGLPPALAANGHRVMTI 124 (564)
Q Consensus 101 GG~~~~~~~La~aLa~~Gh~V~vi 124 (564)
-|-.+...+|+.+|+++|++|.++
T Consensus 13 vGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 13 VGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEE
Confidence 456678888999999999999986
No 263
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=24.37 E-value=1.7e+02 Score=29.26 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHhcCEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -| -++-..+..|--|.-+|-+..|++.+
T Consensus 221 l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 269 (345)
T 4g2n_A 221 LDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIN 269 (345)
T ss_dssp HHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhC
Confidence 4568999999986433 22 34566888899999999998888654
No 264
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=24.33 E-value=49 Score=33.39 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.++|++|+.- ..|+. +|.+|+++|++|.|+=..
T Consensus 22 ~~~dV~IVGaG------~aGl~-----~A~~La~~G~~V~v~E~~ 55 (407)
T 3rp8_A 22 GHMKAIVIGAG------IGGLS-----AAVALKQSGIDCDVYEAV 55 (407)
T ss_dssp -CCEEEEECCS------HHHHH-----HHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCC------HHHHH-----HHHHHHhCCCCEEEEeCC
Confidence 46999999952 24555 788899999999999543
No 265
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=24.33 E-value=76 Score=30.01 Aligned_cols=45 Identities=16% Similarity=-0.054 Sum_probs=28.7
Q ss_pred CceEEEEEeeccCc-----cccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPW-----SKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~-----~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.+||++|.+.+.-+ .++|=...=+..-...|.+.|++|.+++|..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35899998874211 1223222334445567888999999999873
No 266
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=24.22 E-value=3.1e+02 Score=27.57 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=56.8
Q ss_pred CeEEEEE--eCCC-hhhHHHHHHHHHhCCCceEEEecc-ChHHHHH-HHHhcCEEEE---cCCC------CCCcHHHH--
Q 008488 431 NVQIIVL--GTGK-KPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILI---PSRF------EPCGLIQL-- 494 (564)
Q Consensus 431 ~v~lvIv--G~g~-~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~~-il~~ADv~v~---PS~~------E~~gl~~l-- 494 (564)
.+.++++ ..|. +...+.++++.+.+++.....+.. +.+++.. +-++||++++ |-.. .+.|...+
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~ 199 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITA 199 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHH
Confidence 5566665 2233 445567778887776433323323 5555544 4457999998 2110 11222222
Q ss_pred --HHH----HcCCcEEEc----CccccccccccCcceeEeeccccccc
Q 008488 495 --HAM----RYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDVI 532 (564)
Q Consensus 495 --EAm----a~G~PvI~s----~~gg~~e~v~~g~~G~l~~~~~~~~~ 532 (564)
|.. ..++|+|++ +.+.+...+.-|..|..+|.....++
T Consensus 200 l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~ 247 (366)
T 4fo4_A 200 IADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTE 247 (366)
T ss_dssp HHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred HHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCC
Confidence 211 358999986 22345566677888999886665433
No 267
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=24.11 E-value=57 Score=31.67 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+.|||.||+. |-+| ..++..|++.||+|.++..+
T Consensus 6 ~~~~I~iIG~--------G~mG---~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVGL--------GSMG---MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECC--------CHHH---HHHHHHHHHCCCeEEEEECC
Confidence 4689999984 3333 34788999999999988654
No 268
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=24.09 E-value=2.7e+02 Score=22.11 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=59.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (564)
.+++|+.+.+ ...+.++.+-...+..+. ..-+..+....+. ..|++++=... +.-|+.+++.+. .++|+|.
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 4 KRILIVDDDT-AILDSTKQILEFEGYEVE--IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEeCCH-HHHHHHHHHHHHCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 3566666544 345555555444443332 2224444444444 35888875443 335666666654 3677765
Q ss_pred cC-ccc---cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
-. ... ..+.++.|..||+ ..|.+.+.|..+|...
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l----------~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYI----------MKPVNPRDLLEKIKEK 118 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhc----------cCCCCHHHHHHHHHHH
Confidence 43 222 3345567888998 6888999998877543
No 269
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.06 E-value=48 Score=30.59 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.2
Q ss_pred cchHHHHhhhhHHHHHhCC-CeEEEEeeCC
Q 008488 100 TGGLGDVLGGLPPALAANG-HRVMTIAPRY 128 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~G-h~V~vitp~~ 128 (564)
+||+| ..+++.|.++| ++|.++..+.
T Consensus 32 tG~iG---~~l~~~L~~~G~~~V~~~~R~~ 58 (236)
T 3qvo_A 32 GGQIA---RHVINQLADKQTIKQTLFARQP 58 (236)
T ss_dssp TSHHH---HHHHHHHTTCTTEEEEEEESSG
T ss_pred CcHHH---HHHHHHHHhCCCceEEEEEcCh
Confidence 46666 45788999999 8999887653
No 270
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=24.04 E-value=45 Score=30.43 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.5
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
|||++|... |. .++ +.....+++++.+.|++|.++--
T Consensus 2 mkiLiI~gs--p~--~~~-s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 2 PKTLIILAH--PN--ISQ-STVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp CCEEEEECC--TT--GGG-CSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CEEEEEEeC--CC--ccH-HHHHHHHHHHHHhCCCeEEEEEc
Confidence 799999974 53 222 35777788888888999988854
No 271
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=23.94 E-value=1.4e+02 Score=28.74 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=54.5
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
..++++|-=.- |...+++++.+. ++++++-+-+.. .+..+++..+++.. .+.. ..++++..|++++
T Consensus 7 ~~igiIG~G~~--g~~~~~~~l~~~--~~~~l~av~d~~---~~~~~~~a~~~~~~-----~~~~--~~~ll~~~D~V~i 72 (308)
T 3uuw_A 7 IKMGMIGLGSI--AQKAYLPILTKS--ERFEFVGAFTPN---KVKREKICSDYRIM-----PFDS--IESLAKKCDCIFL 72 (308)
T ss_dssp CEEEEECCSHH--HHHHTHHHHTSC--SSSEEEEEECSC---HHHHHHHHHHHTCC-----BCSC--HHHHHTTCSEEEE
T ss_pred CcEEEEecCHH--HHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCC-----CcCC--HHHHHhcCCEEEE
Confidence 45777665211 222345555543 678888665554 23455555555421 1322 2345669999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 483 PSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
.+....-.-.+.+|+..|++|++-
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEEC
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEc
Confidence 887655555677899999999985
No 272
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=23.82 E-value=1.3e+02 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.1
Q ss_pred HHHHHHhcCEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-. -+ -++-..++.|.-|..+|-+..|++.+
T Consensus 217 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd 265 (347)
T 1mx3_A 217 LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 265 (347)
T ss_dssp HHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBC
T ss_pred HHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHh
Confidence 3458899999886322 22 23445677788888888888887554
No 273
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=23.79 E-value=3.4e+02 Score=25.09 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHH-HHHHhcCEEEEcCCCCCCcHHHHHHH
Q 008488 420 LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSRFEPCGLIQLHAM 497 (564)
Q Consensus 420 ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~-~il~~ADv~v~PS~~E~~gl~~lEAm 497 (564)
+++.++.+.+-.+.++=+..-.+...+.++++..++++-....+.. ..+++. .+-.+||+++.|...+. ++-.+-
T Consensus 31 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~~d~~---v~~~ar 107 (224)
T 1vhc_A 31 ILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPK---IVKLCQ 107 (224)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHH---HHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECCCCHH---HHHHHH
Confidence 4444444444466777777555556778888988888655555544 333333 46678999998854321 123344
Q ss_pred HcCCcEEE
Q 008488 498 RYGTVPIV 505 (564)
Q Consensus 498 a~G~PvI~ 505 (564)
.+|.+++.
T Consensus 108 ~~g~~~i~ 115 (224)
T 1vhc_A 108 DLNFPITP 115 (224)
T ss_dssp HTTCCEEC
T ss_pred HhCCCEEe
Confidence 45665543
No 274
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=23.75 E-value=80 Score=28.08 Aligned_cols=41 Identities=5% Similarity=-0.006 Sum_probs=28.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCC--CeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G--h~V~vitp~ 127 (564)
|||++|... |....|-...++..++..+.+.| ++|.++-..
T Consensus 2 mkilii~~S--~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSS--ILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECC--SSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeC--CCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 799999974 42112445666667888888876 899888654
No 275
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=23.72 E-value=68 Score=31.94 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..+|+|+|++.. ..-|-.+...+|+.+|++.|.+|.++...
T Consensus 13 ~~~~~i~~~sgk-----GGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 13 QRSLRWIFVGGK-----GGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CTTCCEEEEECS-----TTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CCCeEEEEEeCC-----CCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 346889988852 12344566788999999999999999875
No 276
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=23.66 E-value=38 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=22.1
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEE-EE
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVM-TI 124 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~-vi 124 (564)
|.+|||+.|... |. .+|....+.+...+..+.|++|. ++
T Consensus 4 M~~mkIl~I~GS--~r--~~s~t~~la~~~~~~~~~g~~v~~~i 43 (199)
T 4hs4_A 4 TSPLHFVTLLGS--LR--KASFNAAVARALPEIAPEGIAITPLG 43 (199)
T ss_dssp -CCEEEEEEECC--CS--TTCHHHHHHHHHHHHCCTTEEEEECC
T ss_pred CCCCEEEEEEcC--CC--CCChHHHHHHHHHHHccCCCEEEEEE
Confidence 457999999975 42 35544433333333334578887 44
No 277
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=23.63 E-value=3.3e+02 Score=26.67 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred ecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCe
Q 008488 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (564)
Q Consensus 353 I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v 432 (564)
|.||-+ ...+|... ..+--.+++++|-- +...+.|+|-. ...=..-++.++..+ ++
T Consensus 119 VINa~~-~~~HPtQa----------------LaDl~Ti~e~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~~---g~ 174 (307)
T 2i6u_A 119 VINALS-DEFHPCQV----------------LADLQTIAERKGAL---RGLRLSYFGDG-ANNMAHSLLLGGVTA---GI 174 (307)
T ss_dssp EEESCC-SSCCHHHH----------------HHHHHHHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHT---TC
T ss_pred EEcCCC-CCcCccHH----------------HHHHHHHHHHhCCc---CCeEEEEECCC-CcCcHHHHHHHHHHC---CC
Q ss_pred EEEEEeCCC----hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCC
Q 008488 433 QIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (564)
Q Consensus 433 ~lvIvG~g~----~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~ 485 (564)
++.++|... +++.+.+++.+++.+.++... ..+.+.+.+||++.....
T Consensus 175 ~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-----~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 175 HVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT-----ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred EEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhcCCCEEEecce
No 278
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=23.58 E-value=61 Score=32.00 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHh--CCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA--NGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~--~Gh~V~vitp~ 127 (564)
.+|+|++.+. +|++| ..|+++|.+ .||+|.++...
T Consensus 9 ~~~~vlVTGa-------tG~IG---~~l~~~L~~~~~g~~V~~~~r~ 45 (362)
T 3sxp_A 9 ENQTILITGG-------AGFVG---SNLAFHFQENHPKAKVVVLDKF 45 (362)
T ss_dssp TTCEEEEETT-------TSHHH---HHHHHHHHHHCTTSEEEEEECC
T ss_pred CCCEEEEECC-------CCHHH---HHHHHHHHhhCCCCeEEEEECC
Confidence 4577766553 46655 457889988 99999998764
No 279
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=23.56 E-value=1.9e+02 Score=29.60 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHHHhcCEEEEcCC--CCC---CcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++--. -+. ++-..+..|.-|.-+|-+..|++.+
T Consensus 191 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd 239 (404)
T 1sc6_A 191 LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 239 (404)
T ss_dssp HHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred HHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHh
Confidence 4568999999986432 233 4445888999999999999888655
No 280
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=23.50 E-value=66 Score=29.12 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=19.4
Q ss_pred cchHHHHhhhhHHHHH-hCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALA-ANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa-~~Gh~V~vitp~ 127 (564)
+||+| ..+++.|+ +.||+|.++..+
T Consensus 14 sg~iG---~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 14 AGQIA---QXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp TSHHH---HHHHHHHHHHCCCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhcCCceEEEEecC
Confidence 46666 45788888 899999998765
No 281
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=23.42 E-value=59 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++.|||.||+. |- +-..++..|++.||+|.++..+
T Consensus 20 m~~mkIgiIGl--------G~---mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 20 FQSMQIGMIGL--------GR---MGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp --CCEEEEECC--------SH---HHHHHHHHHHHTTCEEEEECSC
T ss_pred hcCCEEEEECc--------hH---HHHHHHHHHHhCCCEEEEEeCC
Confidence 35689999984 32 3345889999999999988654
No 282
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.35 E-value=2.6e+02 Score=21.65 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=58.6
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCcEE
Q 008488 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (564)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~PvI 504 (564)
+++|+.+.+ ...+.++.+-...+..+. ...+..++...+. ..|++++=... +.-|+.+++.+.. .+|+|
T Consensus 3 ~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 3 KVLIVEDNE-LNMKLFHDLLEAQGYETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 456666543 345555555544443332 2234444433443 35888875443 3457777777753 56777
Q ss_pred EcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 505 VASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
...... ..+..+.|..+|+ ..|.+.+.|.++|..
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~ 117 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYI----------SKPISVVHFLETIKR 117 (124)
T ss_dssp EEC------CHHHHHHHTCSEEE----------CSSCCHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCCEEE----------eCCCCHHHHHHHHHH
Confidence 553322 2334456788888 688889998887754
No 283
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=23.29 E-value=86 Score=30.41 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=30.1
Q ss_pred CCCceEEEEEeeccCccccchH-HHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+..|||++|... |. .+|. ...+..+++.+.+.|++|.++-..
T Consensus 56 ~~~mKILiI~GS--~R--~~S~T~~La~~~~~~l~~~G~eveiidL~ 98 (279)
T 2fzv_A 56 APPVRILLLYGS--LR--ARSFSRLAVEEAARLLQFFGAETRIFDPS 98 (279)
T ss_dssp CSCCEEEEEESC--CS--SSCHHHHHHHHHHHHHHHTTCEEEEBCCT
T ss_pred CCCCEEEEEEeC--CC--CCCHHHHHHHHHHHHHhhCCCEEEEEehh
Confidence 357999999975 43 3454 445556777888889999988654
No 284
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=23.05 E-value=63 Score=31.11 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 100 ~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|++| ..|++.|.++||+|.++...
T Consensus 21 tG~iG---~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 21 AGFVG---KYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CChHH---HHHHHHHHHCCCEEEEEecC
Confidence 45555 45788899999999998754
No 285
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=23.02 E-value=36 Score=32.22 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
..|||.||+.- - .| ..|+.+|++.||+|..+..
T Consensus 5 ~~mkI~IIG~G--~---~G------~sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDDG--S---ST------VNMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCEEEEECCS--C---CC------SCHHHHHHHTTCEEEECSS
T ss_pred CCcEEEEEeeC--H---HH------HHHHHHHHHCCCEEEEecC
Confidence 46999999852 1 22 3589999999999988765
No 286
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=22.85 E-value=70 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
.+|||++-+. .+|.. .=..|...|.++||+|.=+.+
T Consensus 2 ~~MkIaigsD-------haG~~-lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 2 SGMRVYLGAD-------HAGYE-LKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp -CCEEEEEEC-------HHHHH-HHHHHHHHHHHTTCEEEECSC
T ss_pred CCCEEEEEeC-------chhHH-HHHHHHHHHHHCCCEEEEeCC
Confidence 3599876664 35655 344478889999999977754
No 287
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=22.85 E-value=2e+02 Score=29.52 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHhcCEEEEcCC--C---CCCcHHHHHHHHcCCcEEEcCccccccc
Q 008488 469 LAHMIIAGADFILIPSR--F---EPCGLIQLHAMRYGTVPIVASTGGLVDT 514 (564)
Q Consensus 469 ~~~~il~~ADv~v~PS~--~---E~~gl~~lEAma~G~PvI~s~~gg~~e~ 514 (564)
.+.++++.||++++--. - .-++-..++.|.-|.-+|-+..|++.+.
T Consensus 201 sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~ 251 (416)
T 3k5p_A 201 SLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL 251 (416)
T ss_dssp SHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred CHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhH
Confidence 35568999999986332 2 2345568889999999999998886653
No 288
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.84 E-value=3e+02 Score=22.69 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=62.8
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH-cCCcEEE
Q 008488 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-YGTVPIV 505 (564)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma-~G~PvI~ 505 (564)
...+++|+-+.+. ..+.++++-.+.+-.+.. ..-+.+++-+++.. -|++++=-.- +.-|+.+++.+. .++|+|.
T Consensus 7 r~~rILiVdD~~~-~~~~l~~~L~~~G~~v~~-~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 7 RRLRVLVVEDESM-IAMLIEDTLCELGHEVAA-TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIF 84 (123)
T ss_dssp CCCCEEEESSSTT-TSHHHHHHHHHHCCCCCB-CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE
Confidence 4567788876542 344444444443322321 12355665556654 3777764433 456777777764 5788775
Q ss_pred cC-ccccccccccCcceeEeeccccccccCCCCCHHHHHhhcccCCc
Q 008488 506 AS-TGGLVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDST 551 (564)
Q Consensus 506 s~-~gg~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~~ 551 (564)
-. .+......+-+..||+ ..|.+++.|.++|.+..+
T Consensus 85 lTa~~~~~~~~~~g~~~yl----------~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 85 ATGYGSKGLDTRYSNIPLL----------TKPFLDSELEAVLVQISK 121 (123)
T ss_dssp BCTTCTTSCCSSSCSCSCB----------CSSSSHHHHHHHHSTTCS
T ss_pred EecCccHHHHHhCCCCcEE----------ECCCCHHHHHHHHHHHHh
Confidence 43 2322222233556776 789999999998876543
No 289
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=22.55 E-value=65 Score=32.00 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=25.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
+|+|++++. +|++| ..+++.|.++||+|.+++.+
T Consensus 5 ~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 38 (352)
T 1xgk_A 5 KKTIAVVGA-------TGRQG---ASLIRVAAAVGHHVRAQVHS 38 (352)
T ss_dssp CCCEEEEST-------TSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHhCCCEEEEEECC
Confidence 577776664 46666 44778888899999998765
No 290
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=22.52 E-value=1e+02 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp 126 (564)
+.||.+||+.. ...-|-..+...|+++|+++|.+|..+=|
T Consensus 19 ~m~k~i~ItgT----~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 19 FQGHMLFISAT----NTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp CCCEEEEEEES----STTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hcCcEEEEEeC----CCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 35799999975 22356777888999999999999988854
No 291
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.42 E-value=2.8e+02 Score=21.73 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=58.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH---hcCEEEEcCCC-C-CCcHHHHHHHH---cCCc
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMR---YGTV 502 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~---~ADv~v~PS~~-E-~~gl~~lEAma---~G~P 502 (564)
..+++|+.+.+ ...+.++.+-...+..+. ..-+.+++...+. ..|++++-... + .-|+.+++.+. ..+|
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEA-ILLLDFESTLTDAGFLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SCEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEcCcH-HHHHHHHHHHHHcCCEEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 45677777654 344555555444443333 3334455444554 35888875544 3 45676676664 3677
Q ss_pred EEEcCccccccccccCc--ceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 503 PIVASTGGLVDTVEEGF--TGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 503 vI~s~~gg~~e~v~~g~--~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|......-.+....+. .+|+ ..|.+.+.|..+|...
T Consensus 82 ii~~s~~~~~~~~~~~~~~~~~l----------~kP~~~~~l~~~i~~~ 120 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDSIIL----------EKPFTSAQLITAVSQL 120 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTCEEE----------ESSCCHHHHHHHHHHH
T ss_pred EEEEeCCccHHHHHhhcCCcceE----------eCCCCHHHHHHHHHHH
Confidence 77654333233322211 2466 6788888888877543
No 292
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=22.38 E-value=36 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=24.0
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 34 (254)
T 1zmt_A 1 MSTAIVTNV------KHFGG---MGSALRLSEAGHTVACHDES 34 (254)
T ss_dssp -CEEEESST------TSTTH---HHHHHHHHHTTCEEEECCGG
T ss_pred CeEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 677777632 45655 45889999999999887654
No 293
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=22.35 E-value=2e+02 Score=26.67 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=57.7
Q ss_pred EEEEec-cccccCHHHHHHHHHhcccCCeEEEEEeCCC-----hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcC
Q 008488 405 IGFIGR-LEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (564)
Q Consensus 405 i~~iGr-l~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~-----~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~AD 478 (564)
++..+. +....-++.+.+++.++.+.+-+++|+..+. +.+.+.+.+.-++++-++.....+++ ..+.+..||
T Consensus 4 lL~S~~~~~~~~~l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d--~~~~l~~ad 81 (229)
T 1fy2_A 4 LLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD--PLAAIEKAE 81 (229)
T ss_dssp EEESCSCCTTSCTTTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSC--HHHHHHHCS
T ss_pred EEEcCCCCCCCcHHHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecccc--HHHHHhcCC
Confidence 444444 4333335555666776655567888887652 12222333333344433332222222 335788999
Q ss_pred EEEEcCCCC-----------CCcHHHHHHHHcCCcEEEcCccc
Q 008488 479 FILIPSRFE-----------PCGLIQLHAMRYGTVPIVASTGG 510 (564)
Q Consensus 479 v~v~PS~~E-----------~~gl~~lEAma~G~PvI~s~~gg 510 (564)
.+++|= -+ ++--.+-|+...|+|++.+..|.
T Consensus 82 ~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 82 IIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp EEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred EEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 999995 22 22224667777899999998765
No 294
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=22.27 E-value=3.7e+02 Score=26.55 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=0.0
Q ss_pred ecCCcccCCCCCCCccccccccCcchhhhccHHHHHHHHHHhCCCCCCCccEEEEEeccccccCHHHHHHHHHhcccCCe
Q 008488 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (564)
Q Consensus 353 I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v 432 (564)
|.||-| ....|... ..+--.+++++|-- +...|.|+|-+ ..=..-++.++..+ ++
T Consensus 128 VINag~-~~~HPtQa----------------LaDl~Ti~e~~g~l---~glkva~vGD~--~rva~Sl~~~~~~~---G~ 182 (323)
T 3gd5_A 128 VINALT-DHEHPCQV----------------VADLLTIRENFGRL---AGLKLAYVGDG--NNVAHSLLLGCAKV---GM 182 (323)
T ss_dssp EEEEEC-SSCCHHHH----------------HHHHHHHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TC
T ss_pred EEeCCC-CCCCcHHH----------------HHHHHHHHHHhCCC---CCCEEEEECCC--CcHHHHHHHHHHHc---CC
Q ss_pred EEEEEeCCC----hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCC
Q 008488 433 QIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (564)
Q Consensus 433 ~lvIvG~g~----~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~ 485 (564)
.+.+++... +++.+.+++.+.+.+.++..... +.+.+.+||++.....
T Consensus 183 ~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d-----~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 183 SIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRD-----PFEAARGAHILYTDVW 234 (323)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESC-----HHHHHTTCSEEEECCC
T ss_pred EEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECC-----HHHHhcCCCEEEEece
No 295
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=22.23 E-value=1e+02 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.2
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 102 GLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 102 G~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
|-.++..+||.+|+++|++|.++....
T Consensus 38 GKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 38 GKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp THHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 445677889999999999999998653
No 296
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=22.15 E-value=3.5e+02 Score=25.26 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=29.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHHH-HHHHhcCEEEEcCC
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSR 485 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~~-~il~~ADv~v~PS~ 485 (564)
.++++=+--..+.-.+.++++.+++++-+.+.+.+ +.+++. .+-++||+++.|..
T Consensus 59 Gi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~ 115 (232)
T 4e38_A 59 GLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGF 115 (232)
T ss_dssp TCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCC
Confidence 55555443333334566666666666545555544 333333 35567777777753
No 297
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.15 E-value=3.1e+02 Score=22.03 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=58.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHH---cCCcEEEc
Q 008488 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIVA 506 (564)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma---~G~PvI~s 506 (564)
+++|+.+.+. ..+.++.+-...+..+ ...-+..++...+. ..|++++=... +.-|+.+++.+. ..+|+|..
T Consensus 6 ~ILivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 6 RVLLVEDSTS-LAILYKQYVKDEPYDI--FHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp EEEEECSCTT-HHHHHHHHTTTSSSEE--EEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHhcCceE--EEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5667766542 4445555444333223 22224444433443 35888875443 345666666664 35666654
Q ss_pred Cccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 507 STGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 507 ~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
.... ..+.++.|..+|+ ..|.+.+.|..+|...
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l----------~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFL----------EKPINADRLKTSVALH 119 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEE----------ESSCCHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEE----------eCCCCHHHHHHHHHHH
Confidence 3222 3344556788888 6888888888777543
No 298
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=22.12 E-value=82 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=26.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|.|++++.. ..-|-.+...+|+.+|+++| +|.++=..
T Consensus 1 kvI~v~s~K-----GGvGKTT~a~~LA~~la~~g-~VlliD~D 37 (209)
T 3cwq_A 1 MIITVASFK-----GGVGKTTTAVHLSAYLALQG-ETLLIDGD 37 (209)
T ss_dssp CEEEEEESS-----TTSSHHHHHHHHHHHHHTTS-CEEEEEEC
T ss_pred CEEEEEcCC-----CCCcHHHHHHHHHHHHHhcC-CEEEEECC
Confidence 456666642 12355578888999999999 99998654
No 299
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.97 E-value=1.5e+02 Score=25.98 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=40.7
Q ss_pred cccCHH--HHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEE
Q 008488 413 EQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (564)
Q Consensus 413 ~~KG~d--~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~ 482 (564)
.+|+.| +.++++......+.-+++-|+++ +...++.+.++++-+|..++ ++......+.+.||-|+.
T Consensus 90 ~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~D--F~plv~~lr~~~G~~V~v~g-~~~~~s~~L~~~ad~fi~ 158 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIAPDVDRVILVSGDGD--FSLLVERIQQRYNKKVTVYG-VPRLTSQTLIDCADNFVA 158 (165)
T ss_dssp CSCCCHHHHHHHHHHHGGGCSEEEEECCCGG--GHHHHHHHHHHHCCEEEEEE-CGGGSCHHHHHHSSEEEE
T ss_pred cCCCccHHHHHHHHHhhccCCEEEEEECChh--HHHHHHHHHHHcCcEEEEEe-CCCcChHHHHHhCCEEEe
Confidence 455655 56677766432454444555554 88888888876555565554 322223457899998875
No 300
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=21.96 E-value=65 Score=29.56 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=24.1
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||++|+. |.+| ..++..|++.||+|.++..+
T Consensus 28 ~~~I~iiG~--------G~~G---~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 28 APKVGILGS--------GDFA---RSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp -CCEEEECC--------SHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcc--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 589999973 4444 34778888999999887654
No 301
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=21.93 E-value=99 Score=30.50 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=0.0
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
+++|||+|++ .|. +.....++|.+.||+|..+....+
T Consensus 1 s~~mrIvf~G---t~~--------fa~~~L~~L~~~~~~i~~Vvt~pd 37 (314)
T 1fmt_A 1 SESLRIIFAG---TPD--------FAARHLDALLSSGHNVVGVFTQPD 37 (314)
T ss_dssp CCCCEEEEEE---CSH--------HHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCCCEEEEEe---cCH--------HHHHHHHHHHHCCCcEEEEEeCCC
No 302
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=21.92 E-value=74 Score=31.70 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=28.2
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
+++|||++++ ||.| +..+.++|.+..++++.|.+-.|
T Consensus 2 ~~~~~IV~ig---------GGtG--l~~ll~gLk~~~~~iTaIVtvaD 38 (326)
T 2q7x_A 2 MRXPXITVIG---------GGTG--SPVILXSLREXDVEIAAIVTVAD 38 (326)
T ss_dssp CCCCEEEEEC---------CCTT--HHHHHHHHHHSSCEEEEEECCBS
T ss_pred CCCCeEEEEc---------Cccc--HHHHHHHhccCCCCeEEEEECcc
Confidence 4578999988 4555 55688888889999998876544
No 303
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=21.89 E-value=1.5e+02 Score=28.81 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=31.7
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCcccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (564)
+.++++.||++++.-.. + -++-..++.|.-|.-+|-+..|++.+
T Consensus 168 l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd 216 (303)
T 1qp8_A 168 LEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLD 216 (303)
T ss_dssp SHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccC
Confidence 34689999999874322 2 23445778888899899888888665
No 304
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=21.85 E-value=2.2e+02 Score=28.12 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=30.9
Q ss_pred HHHHHHhcCEEEEcCCC--C---CCcHHHHHHHHcCCcEEEcCccccc
Q 008488 470 AHMIIAGADFILIPSRF--E---PCGLIQLHAMRYGTVPIVASTGGLV 512 (564)
Q Consensus 470 ~~~il~~ADv~v~PS~~--E---~~gl~~lEAma~G~PvI~s~~gg~~ 512 (564)
+.++++.||++++.-.. + -++-..++.|.-|..+|.+..|+..
T Consensus 209 l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~v 256 (333)
T 3ba1_A 209 VVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHV 256 (333)
T ss_dssp HHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGB
T ss_pred HHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchh
Confidence 34588999999874332 2 3344578888889989888888765
No 305
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=21.82 E-value=1.1e+02 Score=26.57 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=27.3
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
+|||+++...- -...-+......|.+.|++|.++++..
T Consensus 2 ~~ki~il~~~g-------~~~~e~~~~~~~l~~ag~~v~~vs~~~ 39 (168)
T 3l18_A 2 SMKVLFLSADG-------FEDLELIYPLHRIKEEGHEVYVASFQR 39 (168)
T ss_dssp CCEEEEECCTT-------BCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEeCCC-------ccHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 69999998531 112234556778888999999999874
No 306
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=21.75 E-value=68 Score=29.30 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
..|||++|+. |-+| ..++..|++.||+|.++.++
T Consensus 18 ~~~~I~iiG~--------G~mG---~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 18 QGMEITIFGK--------GNMG---QAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp --CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECC--------CHHH---HHHHHHHHHCCCEEEEEcCC
Confidence 3699999884 3333 44788899999999988654
No 307
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=21.60 E-value=57 Score=30.94 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=24.7
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhC-CCeEEEEeeCC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-Gh~V~vitp~~ 128 (564)
|||++++. +|++|. .+++.|.+. |++|.+++.+.
T Consensus 1 M~ilVtGa-------tG~iG~---~l~~~L~~~~g~~V~~~~R~~ 35 (289)
T 3e48_A 1 MNIMLTGA-------TGHLGT---HITNQAIANHIDHFHIGVRNV 35 (289)
T ss_dssp CCEEEETT-------TSHHHH---HHHHHHHHTTCTTEEEEESSG
T ss_pred CEEEEEcC-------CchHHH---HHHHHHhhCCCCcEEEEECCH
Confidence 77777664 466664 466668887 99999998763
No 308
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=21.54 E-value=67 Score=31.97 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.0
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCC-CeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G-h~V~vitp~ 127 (564)
.|+|++.+. +|++| ..|++.|.++| |+|.++...
T Consensus 32 ~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~~V~~~~r~ 66 (377)
T 2q1s_A 32 NTNVMVVGG-------AGFVG---SNLVKRLLELGVNQVHVVDNL 66 (377)
T ss_dssp TCEEEEETT-------TSHHH---HHHHHHHHHTTCSEEEEECCC
T ss_pred CCEEEEECC-------ccHHH---HHHHHHHHHcCCceEEEEECC
Confidence 577776653 45555 45788899999 999998765
No 309
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.34 E-value=2e+02 Score=23.89 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCC-------CCccEEEEEecc-c-cccCHHHHHHHHHhccc--------CCeEEEEEeCCC---hhhH
Q 008488 386 LKEALQAEVGLPVD-------RNIPVIGFIGRL-E-EQKGSDILAAAIPHFIK--------ENVQIIVLGTGK---KPME 445 (564)
Q Consensus 386 ~~~~l~~~~gl~~~-------~~~~~i~~iGrl-~-~~KG~d~ll~A~~~l~~--------~~v~lvIvG~g~---~~~~ 445 (564)
..+-+.+++++.+. .....|.|-|.- + -+|-+..+++...++.. .++.++|.|-.. +++.
T Consensus 61 eaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkela 140 (170)
T 4hhu_A 61 EAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELA 140 (170)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHH
Confidence 34557788887542 223345665552 2 25666666666666643 345555556443 3556
Q ss_pred HHHHHHHHhCCCceE
Q 008488 446 KQLEQLEILYPEKAR 460 (564)
Q Consensus 446 ~~l~~L~~~~~~~v~ 460 (564)
+..++|..+++-++.
T Consensus 141 keaerl~~efni~v~ 155 (170)
T 4hhu_A 141 KEAERLKAEFNINVQ 155 (170)
T ss_dssp HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhcceEEE
Confidence 666777776664443
No 310
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=21.25 E-value=59 Score=26.49 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=37.9
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHhcCEEEEcCCCCCCcHHHHHHHH--cCCcEE
Q 008488 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMR--YGTVPI 504 (564)
Q Consensus 434 lvIvG~g~--~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~ADv~v~PS~~E~~gl~~lEAma--~G~PvI 504 (564)
++++|.|- .-+-+.+++..++.+-.+. +...+..++...+..+|++++.+.. .+-+.-++..+ .++|+|
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~-i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~~~~~v~vI 79 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVI-IEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLLPNKPVEVI 79 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEE-EEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHSSSSCCCBC
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeE-EEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHhcCCCceEE
Confidence 55667764 3455577777776653333 2233333344467899999987654 33334444433 344443
No 311
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.15 E-value=77 Score=28.62 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=24.3
Q ss_pred ceEEEEEeeccCccccchH-HHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~-~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++|... |. .++. ...+..+.+.+ +.|++|.++-..
T Consensus 1 MkiLiI~gs--pr--~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTH--PN--PTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeC--CC--CCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 899999975 53 3443 23333344444 579999988754
No 312
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=21.05 E-value=80 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
++|||+-|.+. ...-|-.+...+||.+|+++|.+|.++-..
T Consensus 141 ~~~kvIav~s~----KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSP----CGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECS----STTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECC----CCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 46787777643 123355667888999999999999999654
No 313
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=20.98 E-value=77 Score=31.62 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCCC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~~ 129 (564)
+++|||++++ ||.| ...+.++|.+.+++++.|..-.|
T Consensus 2 ~~~~kIv~lg---------GGtG--l~~ll~gLk~~~~~iTaIVtv~D 38 (332)
T 2ppv_A 2 MKQMNVVLIG---------GGTG--LSVLARGLREFPIDITAIVTVAD 38 (332)
T ss_dssp -CCEEEEEEE---------CHHH--HHHHHHHHTTSSEEEEEEECCCC
T ss_pred CCCCeEEEEc---------Cccc--HHHHHHHHHhCCCCeEEEEECCc
Confidence 3578999988 6666 66788899888999998877644
No 314
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=20.83 E-value=2.7e+02 Score=28.21 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCEEEEcCCCC----C--CcHHHHHHHHcCCcEEEc--Ccccccccccc
Q 008488 468 PLAHMIIAGADFILIPSRFE----P--CGLIQLHAMRYGTVPIVA--STGGLVDTVEE 517 (564)
Q Consensus 468 ~~~~~il~~ADv~v~PS~~E----~--~gl~~lEAma~G~PvI~s--~~gg~~e~v~~ 517 (564)
+.+.+.++.||++|..-... + +.-..++.|.-|..+|-. +.||..|+.+.
T Consensus 257 ~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~ 314 (381)
T 3p2y_A 257 QALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEP 314 (381)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCT
T ss_pred HHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccC
Confidence 35567899999999754321 1 345688888888888755 57888885443
No 315
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.79 E-value=3.5e+02 Score=22.11 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=58.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~-E~~gl~~lEAma---~G~PvI 504 (564)
..+++|+.+.+ ...+.++.+-...+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+|
T Consensus 14 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 14 RPEILLVDSQE-VILQRLQQLLSPLPYTL--HFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHTTSSCEE--EEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEECCCH-HHHHHHHHHhcccCcEE--EEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 35566666543 24444544444433222 222244444334433 4777775543 455666666664 467777
Q ss_pred EcCccc----cccccccC-cceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 505 VASTGG----LVDTVEEG-FTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 505 ~s~~gg----~~e~v~~g-~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
...... ..+.+..| ..+|+ ..|.+.+.|..+|...
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l----------~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYL----------SKPWDDQELLLALRQA 130 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEE----------CSSCCHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEE----------eCCCCHHHHHHHHHHH
Confidence 654333 23344556 67888 6888999988877543
No 316
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.75 E-value=2.1e+02 Score=28.03 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=56.8
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~ 480 (564)
..++.+|-=.- |....+.++... ++++++-+.+.. .+..++++++++.. .. |+ ...++++ ..|++
T Consensus 24 irigiIG~G~i--g~~~~~~~~~~~--~~~~lvav~d~~---~~~a~~~a~~~g~~-~~---y~--d~~ell~~~~iDaV 90 (350)
T 4had_A 24 LRFGIISTAKI--GRDNVVPAIQDA--ENCVVTAIASRD---LTRAREMADRFSVP-HA---FG--SYEEMLASDVIDAV 90 (350)
T ss_dssp EEEEEESCCHH--HHHTHHHHHHHC--SSEEEEEEECSS---HHHHHHHHHHHTCS-EE---ES--SHHHHHHCSSCSEE
T ss_pred cEEEEEcChHH--HHHHHHHHHHhC--CCeEEEEEECCC---HHHHHHHHHHcCCC-ee---eC--CHHHHhcCCCCCEE
Confidence 46777775211 223355666655 688888777765 34556667776521 11 22 1234565 46999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
++.+....-.-..++|+..|++|+|-
T Consensus 91 ~I~tP~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEeCCCchhHHHHHHHHhcCCEEEEe
Confidence 98877654455578899999999875
No 317
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=20.69 E-value=61 Score=31.29 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhC-----C-CeEEEEee
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-----G-HRVMTIAP 126 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~-----G-h~V~vitp 126 (564)
++|||+||+. |.+|. .++..|++. | |+|+++..
T Consensus 7 ~~m~I~iiG~--------G~mG~---~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 7 QPIKIAVFGL--------GGVGG---YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CCEEEEEECC--------SHHHH---HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHhCccccCCCCCEEEEEc
Confidence 3589999984 44443 356777777 9 99999865
No 318
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.65 E-value=3.3e+02 Score=21.83 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=64.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh---cCEEEEcCCC-C-CCcHHHHHHHH--cCCcE
Q 008488 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-E-PCGLIQLHAMR--YGTVP 503 (564)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~---ADv~v~PS~~-E-~~gl~~lEAma--~G~Pv 503 (564)
..+++|+.+.+ ...+.++.+-...+..+. ...+..++...+.. .|++++-... + .-|+.+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSK-FQAKTIANILNKYGYTVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCEEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 35677777654 355556665555543333 33355555555543 5888876554 3 56777776665 37777
Q ss_pred EEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccCC
Q 008488 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLDS 550 (564)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~~ 550 (564)
|.-.... ..+....|..+|+ ..|.+.+.|.++|....
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYV----------MKSATEQVLITIVEMAL 122 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEE----------ETTCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEE----------eCCCCHHHHHHHHHHHH
Confidence 7543322 3345556778888 68889999988876543
No 319
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=20.57 E-value=1.5e+02 Score=29.88 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=76.7
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh-cCEE
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-ADFI 480 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~-ADv~ 480 (564)
.|+.+..=.-.+....+..++-+..|.+....+|=++-...+-.+.+..+.++.+--+..-..|+..++...+.. +|.+
T Consensus 30 ~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dkl 109 (366)
T 3noy_A 30 APIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGI 109 (366)
T ss_dssp SCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred CcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeE
Confidence 354444444566788999999999887777788888877666677788887776533444445777666555544 7775
Q ss_pred -EEcCCC---CCCcHHHHHHHHcCCcEE-EcCccccccccc
Q 008488 481 -LIPSRF---EPCGLIQLHAMRYGTVPI-VASTGGLVDTVE 516 (564)
Q Consensus 481 -v~PS~~---E~~gl~~lEAma~G~PvI-~s~~gg~~e~v~ 516 (564)
|.|-.. |-+--++-.|-.+|+|+. ..+.|.+..-+.
T Consensus 110 RINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll 150 (366)
T 3noy_A 110 RINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLL 150 (366)
T ss_dssp EECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHH
T ss_pred EECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHH
Confidence 455432 233456778889999975 567777765443
No 320
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=20.54 E-value=82 Score=29.13 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=24.6
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 3 ~k~vlVTGa------s~GIG---~a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTGA------GSGLG---RALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEEST------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 466666632 46666 46889999999999888754
No 321
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=20.53 E-value=2.9e+02 Score=28.15 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=55.0
Q ss_pred CeEEEEE--eCCC-hhhHHHHHHHHHhCCCceEEEeccChHHHHH-HHHhcCEEEEc--------CC-CCCCcHHHHHH-
Q 008488 431 NVQIIVL--GTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHM-IIAGADFILIP--------SR-FEPCGLIQLHA- 496 (564)
Q Consensus 431 ~v~lvIv--G~g~-~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~-il~~ADv~v~P--------S~-~E~~gl~~lEA- 496 (564)
.+.++++ +.|. ....+.++++...++..+..-.-.+.+++.. +-+++|++++- .+ ..+.+...+++
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al 235 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAI 235 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHH
Confidence 5666776 3443 3456677777666543333211234454444 34478999881 01 01222222221
Q ss_pred ------H-HcCCcEEEc----CccccccccccCcceeEeeccccccc
Q 008488 497 ------M-RYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDVI 532 (564)
Q Consensus 497 ------m-a~G~PvI~s----~~gg~~e~v~~g~~G~l~~~~~~~~~ 532 (564)
. ..++|||++ +.+.+...+.-|..|..+|.....|+
T Consensus 236 ~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~ 282 (400)
T 3ffs_A 236 EKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTE 282 (400)
T ss_dssp HHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBT
T ss_pred HHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCC
Confidence 1 258999986 23445566667888998887665443
No 322
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.49 E-value=2.8e+02 Score=22.05 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHHh--cCEEEEcCCC------CCCcHHHHHHHH---cC
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF------EPCGLIQLHAMR---YG 500 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~~--ADv~v~PS~~------E~~gl~~lEAma---~G 500 (564)
.+++|+.+.+ ...+.++++-...+..+. ..-+..++...+.. .|++++-... +.-|+.+++.+. ..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 4 GTIIIVDDNK-GVLTAVQLLLKNHFSKVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTTSSEEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred ceEEEEeCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 4667776543 345555555554433332 22344444445544 4777765433 334666666554 36
Q ss_pred CcEEEcCccc----cccccccCcceeEeeccccccccCCCCCHHHHHhhcccC
Q 008488 501 TVPIVASTGG----LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPLD 549 (564)
Q Consensus 501 ~PvI~s~~gg----~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~~ 549 (564)
+|+|...... ..+.+..|..+++ ..|.+.+.|.++|...
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l----------~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFV----------VKPWDNQKLLETLLNA 123 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEE----------EESCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCchhee----------eCCCCHHHHHHHHHHH
Confidence 7777553222 3344556778888 5788888888777543
No 323
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=20.46 E-value=87 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=27.4
Q ss_pred ceEEEEEeeccCccccch-HHHHhhhhHHHHHhC--CCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGG-LGDVLGGLPPALAAN--GHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG-~~~~~~~La~aLa~~--Gh~V~vitp~ 127 (564)
|||++|... |. +.+| ....+..+.+.+.+. |++|.++-..
T Consensus 2 mkiLii~gS--pr-~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 2 SRILAVHAS--PR-GERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCEEEEECC--SC-STTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CEEEEEEeC--CC-CCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 899999974 53 2133 344555677777776 9999988654
No 324
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=20.45 E-value=71 Score=31.48 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.++||++|+.- --+.+++.+..++++.|.+|.+++|.
T Consensus 146 ~glkva~vGD~--------~~~rva~Sl~~~~~~~G~~v~~~~P~ 182 (304)
T 3r7f_A 146 KGLTVSIHGDI--------KHSRVARSNAEVLTRLGARVLFSGPS 182 (304)
T ss_dssp TTCEEEEESCC--------TTCHHHHHHHHHHHHTTCEEEEESCG
T ss_pred CCCEEEEEcCC--------CCcchHHHHHHHHHHcCCEEEEECCC
Confidence 47999999852 12358899999999999999999996
No 325
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=20.37 E-value=80 Score=30.57 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=28.1
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeCC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~~ 128 (564)
.+|+|++|+. |.+....+..|.+.|++|+|++|..
T Consensus 12 ~~k~VLVVGg-----------G~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGG-----------GEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEE-----------SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECC-----------cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4788998873 2356778889999999999999863
No 326
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=20.35 E-value=69 Score=28.92 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=23.4
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||++++. .|.+| ..++..|.+.||+|.++..+
T Consensus 1 m~i~iiGa-------~G~~G---~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGG-------TGNLG---KGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEEcC-------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 67777652 24433 45788899999999988654
No 327
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=20.34 E-value=65 Score=31.68 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=23.8
Q ss_pred CCceEEEEEeeccCccccchHHHHhhhhHHHHHhCC-CeEEEEeeC
Q 008488 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (564)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~G-h~V~vitp~ 127 (564)
.+|+|++.+. +|++| ..|+++|.++| ++|.++...
T Consensus 45 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~~V~~~~r~ 80 (357)
T 2x6t_A 45 EGRMIIVTGG-------AGFIG---SNIVKALNDKGITDILVVDNL 80 (357)
T ss_dssp ---CEEEETT-------TSHHH---HHHHHHHHHTTCCCEEEEECC
T ss_pred CCCEEEEECC-------CcHHH---HHHHHHHHHCCCcEEEEEecC
Confidence 4588876654 46655 45788899999 999988754
No 328
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=20.27 E-value=39 Score=33.53 Aligned_cols=43 Identities=2% Similarity=-0.111 Sum_probs=26.9
Q ss_pred CCCceEEEEEeeccCccccchHHH-HhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGD-VLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~-~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|++|||+++..-..+. --++. ....++++|.+.||+|.++...
T Consensus 1 m~~~~v~vl~gG~s~E---~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (343)
T 1e4e_A 1 MNRIKVAILFGGCSEE---HDVSVKSAIEIAANINKEKYEPLYIGIT 44 (343)
T ss_dssp -CCEEEEEEEECSSTT---HHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCC---cchhHHHHHHHHHHhhhcCCEEEEEEEc
Confidence 3478999997421110 01111 2455888999999999998754
No 329
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=20.23 E-value=71 Score=31.29 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=24.2
Q ss_pred CCCceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
-..|||++|+. |.+| ..++..|++.||+|+++ .+
T Consensus 17 ~~~~kI~IiGa--------Ga~G---~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGA--------GAVG---CYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp ---CEEEEESC--------SHHH---HHHHHHHHHTTCEEEEE-CC
T ss_pred ccCCcEEEECc--------CHHH---HHHHHHHHHCCCeEEEE-Ec
Confidence 35799999984 5544 33677888999999999 54
No 330
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=20.23 E-value=57 Score=32.14 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEe
Q 008488 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (564)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vit 125 (564)
|++|+. .| .|+. +|..|+++|++|.|+=
T Consensus 7 ViIVGa--Gp----aGl~-----~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 7 VLVVGG--GP----GGST-----AARYAAKYGLKTLMIE 34 (397)
T ss_dssp EEEECC--SH----HHHH-----HHHHHHHTTCCEEEEC
T ss_pred EEEECc--CH----HHHH-----HHHHHHHCCCcEEEEe
Confidence 788875 23 4544 7888999999999993
No 331
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=20.22 E-value=2.3e+02 Score=27.84 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=54.8
Q ss_pred ccEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCE
Q 008488 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADF 479 (564)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv 479 (564)
...++++|-=.- |...++.++.+. ++++++-+-+.. .+..+++..+++ +..+ ....++++ ..|+
T Consensus 27 ~~rigiIG~G~~--g~~~~~~~l~~~--~~~~l~av~d~~---~~~~~~~a~~~g--~~~~-----~~~~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADI--AWRRALPALEAE--PLTEVTAIASRR---WDRAKRFTERFG--GEPV-----EGYPALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHH--HHHTHHHHHHHC--TTEEEEEEEESS---HHHHHHHHHHHC--SEEE-----ESHHHHHTCTTCSE
T ss_pred ceEEEEEcCcHH--HHHHHHHHHHhC--CCeEEEEEEcCC---HHHHHHHHHHcC--CCCc-----CCHHHHhcCCCCCE
Confidence 356888876211 222345666554 578887665544 234555555554 3222 12334565 5899
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 008488 480 ILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (564)
Q Consensus 480 ~v~PS~~E~~gl~~lEAma~G~PvI~s 506 (564)
+++.+....-.-.+.+|+..|++|++-
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~E 119 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAE 119 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEe
Confidence 999877654455577899999999874
No 332
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=20.21 E-value=77 Score=30.33 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=24.6
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||.+|+. |-+ -..++..|++.||+|.++.++
T Consensus 1 s~~i~iIG~--------G~m---G~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pef_A 1 SQKFGFIGL--------GIM---GSAMAKNLVKAGCSVTIWNRS 33 (287)
T ss_dssp CCEEEEECC--------SHH---HHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEee--------cHH---HHHHHHHHHHCCCeEEEEcCC
Confidence 389999884 333 344788899999999988655
No 333
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=20.21 E-value=4.3e+02 Score=24.06 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred cEEEEEeccccccCHHHHHHHHHhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEecc-ChHHH-HHHHHhcCEE
Q 008488 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLA-HMIIAGADFI 480 (564)
Q Consensus 403 ~~i~~iGrl~~~KG~d~ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~-~~~~~-~~il~~ADv~ 480 (564)
+++..+-..+.. .+++.++.+.+-.+.++-+..-.+.-.+.++++..++++-....+.+ ..+++ ..+-++||++
T Consensus 17 ~~i~v~r~~~~~----~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 17 PVVPVIVVKKLE----HAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SEEEEECCSSGG----GHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCE
T ss_pred CEEEEEECCCHH----HHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEE
Confidence 455555444333 33344444444456677776555555678888888888656555555 33333 3467789999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEE
Q 008488 481 LIPSRFEPCGLIQLHAMRYGTVPI 504 (564)
Q Consensus 481 v~PS~~E~~gl~~lEAma~G~PvI 504 (564)
+.|...+ -+.-.+-.+|.+.+
T Consensus 93 ~~p~~d~---~v~~~~~~~g~~~i 113 (214)
T 1wbh_A 93 ISPGLTE---PLLKAATEGTIPLI 113 (214)
T ss_dssp EESSCCH---HHHHHHHHSSSCEE
T ss_pred EcCCCCH---HHHHHHHHhCCCEE
Confidence 9885322 11223334666655
No 334
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.03 E-value=3.2e+02 Score=21.45 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=58.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeccChHHHHHHHH--hcCEEEEcCCC-CCCcHHHHHHHHc-----CCcE
Q 008488 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (564)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~L~~~~~~~v~~~~~~~~~~~~~il~--~ADv~v~PS~~-E~~gl~~lEAma~-----G~Pv 503 (564)
.+++|+.+.+ ...+.++.+-. .+..+ ...-+..++...+. ..|++++=... +.-|+.+++.+.. .+|+
T Consensus 5 ~~ilivdd~~-~~~~~l~~~l~-~~~~v--~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 5 PKVLIVENSW-TMRETLRLLLS-GEFDC--TTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp CEEEEECSCH-HHHHHHHHHHT-TTSEE--EEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CEEEEEcCCH-HHHHHHHHHHh-CCcEE--EEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4667776543 34445554444 22223 22334444444443 35888775543 4567777777664 6777
Q ss_pred EEcCccc---cccccccCcceeEeeccccccccCCCCCHHHHHhhccc
Q 008488 504 IVASTGG---LVDTVEEGFTGFQMGSFSVDVIYSSPSYNSRVIPRIPL 548 (564)
Q Consensus 504 I~s~~gg---~~e~v~~g~~G~l~~~~~~~~~~v~~~d~~aLa~aI~~ 548 (564)
|...... ..+....|..+|+ ..|.+.+.|.++|..
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l----------~KP~~~~~l~~~i~~ 118 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYL----------VKPVKPPVLIAQLHA 118 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEE----------ESSCCHHHHHHHHHH
T ss_pred EEEeCCCcHhHHHHhhcCCceEE----------eccCCHHHHHHHHHH
Confidence 6543222 2344556777887 688899998887754
No 335
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=20.03 E-value=85 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=25.2
Q ss_pred CceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
.|||.||+. |- +-..++..|++.||+|.++..+
T Consensus 21 m~~I~iIG~--------G~---mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 21 MMEVGFLGL--------GI---MGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp SCEEEEECC--------SH---HHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECc--------cH---HHHHHHHHHHHCCCeEEEEeCC
Confidence 589999984 33 3345888999999999988654
No 336
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=20.02 E-value=89 Score=29.84 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=27.3
Q ss_pred ceEEEEEeeccCccccchHHHHhhhhHHHHHhCCCeEEEEeeC
Q 008488 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (564)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aLa~~Gh~V~vitp~ 127 (564)
|||+++.....+. .... .....+++++.++||+|.++.+.
T Consensus 2 m~i~il~~~~~~~-~~~~--~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKK--DSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGC-CTTT--CHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhC-CcCC--ChHHHHHHHHHHCCCEEEEEchh
Confidence 6999999642211 1111 12356999999999999999875
Done!