BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008489
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/474 (43%), Positives = 300/474 (63%), Gaps = 14/474 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 138 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 197
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 198 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 257
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 258 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 317
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 318 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 377 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 436
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 437 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 496
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK- 469
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 497 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNE 556
Query: 470 --GIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDREL 521
LR + L PK L +LE++H VLDLY+WLS+R + FPD L
Sbjct: 557 PLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASL 609
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/473 (42%), Positives = 294/473 (62%), Gaps = 12/473 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 138 SDLRIPPNWYPDARAXQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 197
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVE V + Y+ AVIDEIQ + RG
Sbjct: 198 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEXCSVTTPYEVAVIDEIQXIRDPARG 257
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ ++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 258 WAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRLTPISVLDHALESLD 317
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 318 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIG GLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 377 VATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 436
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + EDL LL + L P + +AGL P + I ++ PD++L +++ F++ ++
Sbjct: 437 EVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPDATLSNLIDIFVDFSQ 496
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 470
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 497 VDGQYFVCNXDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNE 556
Query: 471 IVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDREL 521
+ + + L PK L +LE++H VLDLY+WLS+R + FPD L
Sbjct: 557 PLTFAWLRRYIKWPLLPPKNIKDLXDLEAVHDVLDLYLWLSYRFXDXFPDASL 609
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK------------AIESRGKHLCSIVYGSLPPETRTR 280
+F N + I F +I RLKK ++ RG ++ +G L P +
Sbjct: 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG---IAVHHGGLLPIVKEL 416
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRA
Sbjct: 417 IEILFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474
Query: 341 GRYG 344
GR G
Sbjct: 475 GRRG 478
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 132/337 (39%), Gaps = 73/337 (21%)
Query: 78 KVILHVGPTNSGKT---HQALSRLESSSSG--IYCGPLRLLA---WEVAKRLNKANVSCD 129
K +L PT +GKT A+ R E+ G +Y PLR LA +E K+ K +
Sbjct: 41 KNLLLAMPTAAGKTLLAEMAMVR-EAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99
Query: 130 LITG--QEREEVDGAKHRAVTV-EMADV--------VSDYDCAVIDEIQMLGCKTRGFSF 178
+ TG + R+E G VT E AD + C V+DEI +L + RG +
Sbjct: 100 ISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATL 159
Query: 179 TRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP-------LNV 229
+ + L + G A P + +I + D V + R PLV L +
Sbjct: 160 EILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDW-RPVPLVEGVLCEGTLEL 218
Query: 230 PLGSFSNIQ-------TGDCIVTFSRHAIYR-LKKAIESRGKHLCSIVYGSLPPE----- 276
G+FS + +C+ ++ ++ E L +I + E
Sbjct: 219 FDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKA 278
Query: 277 ---------TR-----TRQATRFNDAS---------------SEFDVLVASDAIGMGLNL 307
+R R+ F+ A V+VA+ + G+NL
Sbjct: 279 ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
R+I ++ +FDG R + V E KQ+AGRAGR G
Sbjct: 339 PARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPG 374
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ +GLN+ ++F++++K+DG + R ++ E Q++GRAGR G
Sbjct: 435 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 485
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ +GLN+ ++F++++K+DG + R ++ E Q++GRAGR G
Sbjct: 533 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583
>pdb|1H6Y|A Chain A, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
pdb|1H6Y|B Chain B, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 4 LLLRNRKASALGIPRILR------DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKF 57
LL+RNR A+ G R L N FS+ + I GA ++ + Y GSG +++
Sbjct: 44 LLVRNRTAAWNGAQRALNPRTFVPGNTYCFSVVASFIEGASSTTFCMKLQYVDGSGTQRY 103
Query: 58 DFTDLTR--PHTWYPLARKKVR 77
D D+ P+ W L + R
Sbjct: 104 DTIDMKTVGPNQWVHLYNPQYR 125
>pdb|1H6X|A Chain A, The Role Of Conserved Amino Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 4 LLLRNRKASALGIPRILR------DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKF 57
LL+RNR A+ G R L N FS+ + I GA ++ + Y GSG +++
Sbjct: 44 LLVRNRTAAWNGAQRALNPRTFVPGNTYCFSVVASFIEGASSTTFCMKLQYVDGSGTQRY 103
Query: 58 DFTDLTR--PHTWYPLARKKVR 77
D D+ P+ W L + R
Sbjct: 104 DTIDMKTVGPNQWVHLYNPQYR 125
>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23.
pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23
Length = 288
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT--GDCIVTFSRHAIYRL 254
A +P++ + LQ G D+ + + R L P F+ + T G V IYRL
Sbjct: 147 ADIPVLVRALQPYGLDIVIDHFGRPDARRGLGQP--GFAELLTLSGRGKVWVKVSGIYRL 204
Query: 255 KKAIESR----GKHLCSI---------VYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
+ + E + LC++ +GS P T+ F A +F+ L S +
Sbjct: 205 QGSPEENLAFARQALCALEAHYGAERLXWGSDWPHTQHESEVSFGSAVEQFEALGCSAQL 264
Query: 302 GMGLNLNISRIIFS 315
L L+ +R +F
Sbjct: 265 RQALLLDTARALFG 278
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFD---GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
V+VA+ + G+NL +I + +F+ ++ + E KQ++GRAGR G +G
Sbjct: 341 VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD-QIG 399
Query: 351 E--VTCLDSEDLPLLHK 365
E V D ED+ + K
Sbjct: 400 ESIVVVRDKEDVDRVFK 416
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF-PVGEVT 353
+VA+ + G+N R+I + ++ + + + EV Q+ GRAGR K+ VGE
Sbjct: 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR--PKYDEVGEGI 381
Query: 354 CLDSEDLP 361
+ + D P
Sbjct: 382 IVSTSDDP 389
>pdb|1DYO|A Chain A, Xylan-Binding Domain From Cbm 22, Formally X6b Domain
pdb|1DYO|B Chain B, Xylan-Binding Domain From Cbm 22, Formally X6b Domain
Length = 160
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 4 LLLRNRKASALGIPRILR------DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKF 57
LL+RNR A+ G R L N FS+ + I GA ++ Y GSG +++
Sbjct: 44 LLVRNRTAAWNGAQRALNPRTFVPGNTYCFSVVASFIEGASSTTFCXKLQYVDGSGTQRY 103
Query: 58 DFTDLTR--PHTWYPLARKKVR 77
D D P+ W L + R
Sbjct: 104 DTIDXKTVGPNQWVHLYNPQYR 125
>pdb|3MAW|A Chain A, Structure Of The Newcastle Disease Virus F Protein In The
Po Conformation
pdb|3MAW|B Chain B, Structure Of The Newcastle Disease Virus F Protein In The
Po Conformation
Length = 483
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+FN+ + E D + + +G+ LNL ++ + + L LT+ + +AG Y
Sbjct: 158 QFNNTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDY 217
Query: 344 -GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGIL 402
+K VG +++ L+ L+ +P+L + L+ + L +L +
Sbjct: 218 LLTKLGVG-----NNQLSSLIGSGLITGNPILYDS----QTQLLGIQVTLPSVGNLNNMR 268
Query: 403 EHFLENAKLSENYFFANC---EEVLKVATVIDQL 433
+LE +S FA+ + V +V +VI++L
Sbjct: 269 ATYLETLSVSTTKGFASALVPKVVTQVGSVIEEL 302
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+FN + E D + + +G+ LNL ++ + + L LT+ + +AG Y
Sbjct: 158 QFNKTAQELDCIKITQQVGVELNLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDY 217
Query: 344 -GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGIL 402
+K VG +++ L+ L+ +P+L + L+ + L +L +
Sbjct: 218 LLTKLGVG-----NNQLSSLISSGLITGNPILYDS----QTQLLGIQVTLPSVGNLNNMR 268
Query: 403 EHFLENAKLSENYFFANC---EEVLKVATVIDQL 433
+LE +S FA+ + V +V +VI++L
Sbjct: 269 ATYLETLSVSTTKGFASALVPKVVTQVGSVIEEL 302
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV-ID 431
++ G+ FDL Y D++ YG + HF+ ++ C+ L+V V ID
Sbjct: 186 FYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHS----------CDPNLQVFNVFID 235
Query: 432 QLPLRLHEKYLFCISPVDMNDDIS 455
L RL LF ++ ++++
Sbjct: 236 NLDTRLPRIALFSTRTINAGEELT 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,672,662
Number of Sequences: 62578
Number of extensions: 649086
Number of successful extensions: 1614
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 19
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)