BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008489
(564 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJT0|SUV3_CHICK ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus
GN=SUPV3L1 PE=2 SV=1
Length = 794
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 317/511 (62%), Gaps = 23/511 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D + ++K +DL P WYP AR RK+I
Sbjct: 144 DDLFPFFLRHAKQI--FPMLDCM-------DDLRKI--SDLRLPPNWYPEARAIQRKIIF 192
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER----E 137
H GPTNSGKT+ A+ R S+ SGIYCGPL+LLA E+ ++ N ANV CDL+TG+ER E
Sbjct: 193 HAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNAANVPCDLVTGEERVYASE 252
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A T+EM + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ A
Sbjct: 253 DAKQASHIACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGA 312
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + +
Sbjct: 313 AIDLVTELMYTTGEEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQ 372
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-- 315
IE+RG C+++YGSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+
Sbjct: 373 IEARGLE-CAVIYGSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSI 431
Query: 316 ---TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ +T + QIAGRAGR+GS F GEVT + +DL L + L E P
Sbjct: 432 VKPTVNEKGEKEIDSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLLQLKEILSEAVP 491
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+++AGL P + I M++ PD++L +++ F+ +++ YF N ++ +A +I
Sbjct: 492 PVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 551
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQA 490
+PL L +Y+FC +P++ + L +FA +S+ + + T L PK
Sbjct: 552 IPLNLRSRYVFCTAPLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAPPKNIK 611
Query: 491 ALRELESIHKVLDLYVWLSFRLEESFPDREL 521
L LE++H V DLY+WLS+R + FPD L
Sbjct: 612 ELVHLEAVHDVFDLYLWLSYRFMDMFPDAAL 642
>sp|Q5EBA1|SUV3_RAT ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus
norvegicus GN=Supv3l1 PE=2 SV=1
Length = 776
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/488 (43%), Positives = 307/488 (62%), Gaps = 12/488 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL RP WYP AR RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+
Sbjct: 182 ISDLRRPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIF 241
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ R
Sbjct: 242 EKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPAR 301
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 302 GWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVQKYERLTPISVLDRALESL 361
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +
Sbjct: 362 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKI 420
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F
Sbjct: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKE 480
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DL LL + L P +++AGL P + I M++ P+++L +++ F++ A
Sbjct: 481 GEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFA 540
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 541 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN 600
Query: 470 GIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 527
+ + + L PK L +LE++H V DLY+WLS+R + FPD S +
Sbjct: 601 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFIDMFPDSSFVRSLQK 660
Query: 528 ICSMLIEE 535
++I+E
Sbjct: 661 ELDVIIQE 668
>sp|Q80YD1|SUV3_MOUSE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus
GN=Supv3l1 PE=2 SV=1
Length = 779
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/488 (43%), Positives = 306/488 (62%), Gaps = 12/488 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR + RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+
Sbjct: 182 ISDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIF 241
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ R
Sbjct: 242 EKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPAR 301
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 302 GWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPISVLDHALESL 361
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +
Sbjct: 362 DNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKI 420
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F
Sbjct: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKE 480
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G+VT + +DL LL L P +++AGL P + I M++ P+++L +++ F++ A
Sbjct: 481 GQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFA 540
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 541 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN 600
Query: 470 GIVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKA 527
+ + + L PK L +LE++H V DLY+WLS+R + FPD L S +
Sbjct: 601 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFIDMFPDSSLVRSLQK 660
Query: 528 ICSMLIEE 535
+I+E
Sbjct: 661 ELDAIIQE 668
>sp|Q8IYB8|SUV3_HUMAN ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens
GN=SUPV3L1 PE=1 SV=1
Length = 786
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/473 (43%), Positives = 300/473 (63%), Gaps = 12/473 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 470
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNE 601
Query: 471 IVQLREI--FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDREL 521
+ + + L PK L +LE++H VLDLY+WLS+R + FPD L
Sbjct: 602 PLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASL 654
>sp|A4IG62|SUV3_DANRE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio
GN=supv3l1 PE=2 SV=1
Length = 763
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/473 (41%), Positives = 295/473 (62%), Gaps = 16/473 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK++ H GPTNSGKT+ A+ R + SG+YCGPL+LLA E+
Sbjct: 180 ISDLRVPANWYPEARAIQRKIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIY 239
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER VD + H A T+EM V + Y+ AVIDEIQM+ R
Sbjct: 240 EKSNAAGVPCDLVTGEERIFVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPAR 299
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+H+CG+ AAV I +++ TG++V+V +Y+RL+P N + S
Sbjct: 300 GWAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTGEEVEVHNYKRLTPFSISNHAVESL 359
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG C+++YGSLPP T+ QA +FND +
Sbjct: 360 DNLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIYGSLPPGTKLAQAKKFNDPDDPCKI 418
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF+++ K E+ ++ + QIAGRAGR+ S F
Sbjct: 419 LVATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKE 478
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DLP+L + L +P + +AGL P + I M++ P ++L +++ F+ +
Sbjct: 479 GEVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLS 538
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
++ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 539 QVDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRD 598
Query: 470 GIVQL----REIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPD 518
+ R++ P L PK L LE++H VLDLY+WLS+R + FPD
Sbjct: 599 EPLTFNWVCRQVNWP--LSPPKNIKDLVHLEAVHDVLDLYLWLSYRFMDMFPD 649
>sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila melanogaster GN=CG9791 PE=2 SV=3
Length = 763
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/509 (39%), Positives = 302/509 (59%), Gaps = 24/509 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 252 ESLPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + +
Sbjct: 312 ALDLLQKICETTGETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
+M + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L
Sbjct: 431 IKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
++ AGL P D I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQ 489
+ L L +Y+FC +P++ + A YS+ + I ++PKT
Sbjct: 551 HVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTI 610
Query: 490 AALRELESIHKVLDLYVWLSFRLEESFPD 518
L LE++ V+DLY+WLS+R + FP+
Sbjct: 611 LDLVHLEAVFDVMDLYLWLSYRFMDLFPE 639
>sp|Q17828|SUV3_CAEEL ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis elegans GN=C08F8.2 PE=3 SV=2
Length = 721
Score = 360 bits (925), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 199/492 (40%), Positives = 290/492 (58%), Gaps = 17/492 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 172 SDLTRPHNWYPEARSVTRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFH 231
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N+ + CDL+TG+ER + ++H + TVEM + AVIDEIQML + RG
Sbjct: 232 RTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLRDEQRG 291
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL + + S+S
Sbjct: 292 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIADKAIESYS 351
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ +I+ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 352 NIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 410
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 411 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 466
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 467 RKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 526
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
F ++ ++A +IDQ+PL L +Y FC SP++ D +S + A +S G
Sbjct: 527 FICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFS-TGQALTY 585
Query: 476 EIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEESFPD----RELAASQKAI 528
E PK L E LE +++LD Y+WLS R + PD RE + ++
Sbjct: 586 EWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSM 645
Query: 529 CSMLIEEFLERL 540
+E F+ L
Sbjct: 646 IQEGVESFMSLL 657
>sp|Q61SU7|SUV3_CAEBR ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis briggsae GN=CBG06022 PE=3 SV=3
Length = 721
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/486 (39%), Positives = 288/486 (59%), Gaps = 13/486 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR +RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 170 SDLTRPHNWYPEARSIIRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLATEVFN 229
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 230 RTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 289
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y+R SPL + + S+S
Sbjct: 290 WAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYYDRKSPLTIADRAIESYS 349
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 350 NIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 408
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 409 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 464
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 465 RKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 524
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
F ++ ++A +IDQ+PL L +Y FC SP++ +D ++ + A ++ G
Sbjct: 525 FICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA-TGQALTY 583
Query: 476 EIFTPGTLQVPKTQAALRE---LESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSML 532
E PK + L E LE ++VLD Y+WLS R + PD I +
Sbjct: 584 EWLMDMLEWPPKPASTLSELSLLEQNYEVLDQYMWLSMRFPDMLPDEPRVRDASKILDKM 643
Query: 533 IEEFLE 538
I++ +E
Sbjct: 644 IQDGVE 649
>sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=GA22038
PE=3 SV=1
Length = 762
Score = 355 bits (911), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 200/509 (39%), Positives = 300/509 (58%), Gaps = 29/509 (5%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYTNARALTRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+
Sbjct: 252 DNSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + +
Sbjct: 312 ALELLQKICETTGETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L +
Sbjct: 431 VKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP--GTLQVPKTQ 489
+PL L +Y+FC +P++ + A YS+ + I + ++PKT
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSRNEPITFEFIKSNCGWPFKLPKTI 610
Query: 490 AALRELESIHKVLDLYVWLSFRLEESFPD 518
L LES+ V+DLY R + FP+
Sbjct: 611 LDLVHLESVFDVMDLY-----RFMDLFPE 634
>sp|O94445|SUV3_SCHPO ATP-dependent RNA helicase suv3, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suv3 PE=3 SV=1
Length = 647
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 281/479 (58%), Gaps = 41/479 (8%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL P WYP ARK R +I+HVGPTNSGKTH+AL RL++ GI+ GPLRLLA E+
Sbjct: 154 LTDLKNPIEWYPGARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLRLLAHEIY 213
Query: 119 KRLNKANVSCDLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
RL ++C+L TG+E R + + + TVEM ++ + +D AVIDEIQM+ +RG++
Sbjct: 214 NRLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEIQMMADPSRGYA 273
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+T+ LLG+ A E+HLCG+ + V L++ I ++T DD V YERL+PL L G S
Sbjct: 274 WTQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQDDFTVYRYERLNPLHVAEKSLNGKLSE 333
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
++ GDC+V FSR I+ LK I+ +++YGSLPPE R +QA+ FN SS+ ++L+
Sbjct: 334 LKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVIYGSLPPEVRNQQASLFNSKSSDENILL 393
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVT 353
ASDAIGMGLNL + RI+FS +KKF GV D+ VP++KQIAGRAGR+ GSK G VT
Sbjct: 394 ASDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVT 453
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLS 412
L +D L++++ P+ L +A + DL + Y L D I + + + AK +
Sbjct: 454 TLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSLFSDDIPQKLIFDRYFKLAKTT 513
Query: 413 ENY---------FFANCEEVLKVATVIDQL-----PLRLHEKYLFCISPVDMNDD--ISS 456
+ F + +K T+ D++ P+ H KY +P+ + + + +
Sbjct: 514 TPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLLGCPVLKHSKY----APLFIREIGCVIA 569
Query: 457 QGLTQFATNYSKKGIVQLR----EIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFR 511
QG + I L+ EI G +P T+ L++LE +HK++ Y+W S R
Sbjct: 570 QG--------KRLQIYDLKSVPLEILERG---IPTTETELQQLEQLHKLIVAYMWASIR 617
>sp|P32580|SUV3_YEAST ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUV3 PE=1
SV=2
Length = 737
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 188/502 (37%), Positives = 287/502 (57%), Gaps = 28/502 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKKGIVQLREIFTPGTLQ----VPKTQAALRELESIHKVLDLYVWLSFRLEESFPD 518
+K+ L P L +P +L ES++ ++ LY WLS R F D
Sbjct: 630 CETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRYPNYFID 689
Query: 519 RELAASQKAICSMLIEEFLERL 540
E A K C M+I E L+RL
Sbjct: 690 MESAKDLKYFCEMIIFEKLDRL 711
>sp|O74727|SUV3_SACDO ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
douglasii GN=SUV3 PE=3 SV=1
Length = 737
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 186/502 (37%), Positives = 286/502 (56%), Gaps = 28/502 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+ ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
V C+L+TG+E ++ + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FQSEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMVPINQKFDVVVLDEIQMMSDADRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T ALLG+ + E+HL G+ + +PL++ I+++TGD + + YERL L + P+
Sbjct: 336 WAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEDKPVKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ + LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ SK P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSKSTSGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDEICAQLMTQFPPGTPTSDLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE + S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LERS--SDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKKGIVQLREIFTPGTLQ----VPKTQAALRELESIHKVLDLYVWLSFRLEESFPD 518
+K+ L P L +P +L ES++ ++ LY WLS R F D
Sbjct: 630 CETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRYPNYFID 689
Query: 519 RELAASQKAICSMLIEEFLERL 540
E A K C M+I E L+RL
Sbjct: 690 MESAKDLKYFCEMIIFEKLDRL 711
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 57/315 (18%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWE--------VAKRLNKANVSC 128
K +L PT +GK+ A L +E+ S +Y PLR LA + VA +N S
Sbjct: 24 KNLLITAPTGTGKSFLAMLMAMETKSRVVYTVPLRALALQLNDDFHNKVAPLVNGYADSV 83
Query: 129 DLITGQEREEVDGAKHRAV--TVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSF 178
L + E+ + + R + T E AD + + +IDEI +G K RG +
Sbjct: 84 ALTSEVYEEDPENLEERVIFTTYEKADAIFRRHYPWTDRIETLIIDEIHNIGDKERGKAI 143
Query: 179 TRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
L+ NE + + A +P + +I ++ D +++ ER PL V +G+
Sbjct: 144 EN-LIAYAMNEGIRIVAMSATIPDVNKIAEII-DAEIIKTDERPIPLYKA-VKIGNKLYF 200
Query: 238 QTGDCI-------------------VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+ GD I T +R L + + ++ + + L ET+
Sbjct: 201 EDGDVIELKEDFIKKMVRKNKVVMIFTSTRKKAEELYMIYDRKFQNKVAFFHAGLDAETK 260
Query: 279 TR--QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLT 329
R + TR +++++V++ A+ G+N ++F +K +F G + +T
Sbjct: 261 LRLLEETR----QGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRFTG--WKQIT 314
Query: 330 VPEVKQIAGRAGRYG 344
E QI GRAGR G
Sbjct: 315 PIEFDQICGRAGRPG 329
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 658 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 716
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L +P LH+ ++ L+S F L Y
Sbjct: 717 LLCKGRVPEMADLHRMMMGKPSQLQS-----QFRLTY 748
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++FS +K DG RDL E Q +GRAGR G G V
Sbjct: 642 VLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDV-TGTVI 700
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 387
L +LP + L M S+ L F L Y
Sbjct: 701 ILSRSELP--DTASLRHMIMGPSSKLISQFRLTY 732
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ MGLN+ ++F++ +KFDG + R +T E Q+AGRAGR G
Sbjct: 465 VLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRG 515
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
L A++ MG+N+ ++F+ +KFDG + R ++ E Q++GRAGR G +
Sbjct: 479 LFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
Query: 355 LDSEDLPLLHKSLLEPS 371
+D + P + K LL+ S
Sbjct: 539 VDEKMSPTIGKQLLKGS 555
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ +GLN+ ++F+ ++KFDG R ++ E Q++GRAGR G +
Sbjct: 546 VLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVIL 605
Query: 354 CLDSEDLPLLHKSLLE 369
+D + P + KS+L+
Sbjct: 606 MIDEKMDPPVAKSMLK 621
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
L A++ MG+N+ ++F+ +K+DG + R ++ E Q++GRAGR G +
Sbjct: 477 LFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 536
Query: 355 LDSEDLPLLHKSLLEPS 371
+D + P + K LL+ S
Sbjct: 537 VDEKMSPTIGKQLLKGS 553
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ +GLN+ ++F++++K+DG + R ++ E Q++GRAGR G
Sbjct: 498 VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 548
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 119/338 (35%), Gaps = 82/338 (24%)
Query: 85 PTNSGKTHQAL-----SRLESSSSGIYCGPLRLLAWEVAKR---LNKANVSCDLITGQER 136
PT SGKT AL S + Y PL+ +A+E L++ + + G R
Sbjct: 51 PTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSRMGLKLKISVGDFR 110
Query: 137 EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRG---FSFTRALLGI 185
E A T E D + + ++DEI + RG S +L
Sbjct: 111 EGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIVDEIHSVSDPKRGPILESIVSRMLA- 169
Query: 186 CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-------VPLNVPLGSFSNI- 237
A E L G A VP +I + G + V+S R PL L P G +
Sbjct: 170 SAGEAQLVGLSATVPNAGEIAEWIGGKI-VESSWRPVPLREYVFKEYKLYSPTGGLREVP 228
Query: 238 ----------------QTGDCIV---------TFSRHAIYRLKKAIESR----------- 261
G +V T ++ A RL + + SR
Sbjct: 229 RVYGLYDLDLAAEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRRLSSREARVYSAEASR 288
Query: 262 --------GKHLCSIV-------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
+ L S++ + LPP R F + V+ ++ + G+N
Sbjct: 289 AEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGA--VKVVYSTPTLAAGVN 346
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
L R++ + +++ + V E KQ+AGRAGR G
Sbjct: 347 LPARRVVIDSYYRYEAGFREPIRVAEYKQMAGRAGRPG 384
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+L A++ +GLN+ ++F+ +KF G R LT E Q++GRAGR G
Sbjct: 462 ILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRG 512
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 192 LCGDPAAVPLIQQI-LQVTGDDVKVQSYE--------RLSPL--VPLNVPLGSFSNIQTG 240
LC PA V Q + T + + VQ+ +LS L + L+ LG+ S ++G
Sbjct: 1578 LCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG 1637
Query: 241 -DCIVTFSRHAIY-RLKKAIESRGK-----HLCSIVY----GSLPPETRTRQATRFNDAS 289
+ +V R I+ +LK ++ HL S+ Y GS+PP R +RFN+
Sbjct: 1638 TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1697
Query: 290 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
S +L+ + G+GLNL + + + D +RDL Q RA R G K
Sbjct: 1698 SIDVLLLTTHVGGLGLNLTGADTV--VFVEHDWNPMRDL------QAMDRAHRIGQK 1746
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
VL ++ + G+NL R+I + ++++ G ++ V E KQ+AGRAGR G P GE
Sbjct: 336 VLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLD-PYGEA 394
Query: 353 TCLDS 357
+ S
Sbjct: 395 IIIVS 399
>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella frigidimarina (strain
NCIMB 400) GN=rhlB PE=3 SV=1
Length = 434
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 241 DCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
D + FS +H+ +L +E G H ++ G +P + R R +F S E DVLVA+
Sbjct: 257 DKAIVFSNTKHSCEKLWSYLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGEIDVLVAT 313
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
D GL+++ +++ +L D V +I GR GR G K
Sbjct: 314 DVAARGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGQK 353
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 138/370 (37%), Gaps = 85/370 (22%)
Query: 78 KVILHVGPTNSGKT---HQALSR-LESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133
K +L PT SGKT A+ R + + +Y PL+ LA E + V L TG
Sbjct: 40 KNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVGLSTG 99
Query: 134 QEREEVDGAKHRAVTVEMADVVS-----------DYDCAVIDEIQMLGCKTRGFSFTRA- 181
D + V ++ V D VIDEI ++ RG +
Sbjct: 100 DLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTLEMVI 159
Query: 182 -----------LLGICANELHLCGDPAAVPLIQQILQVTGD------------DVKVQSY 218
L+G+ A G+P + VT D ++Q
Sbjct: 160 AKMRSKNPGMQLIGLSAT----IGNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFA 215
Query: 219 ERLSPLVP-------LNVPLGSFSNIQTGDCIVTFS--RHA---IYRLKKAIESRGKHLC 266
ER+ P+ LN+ L + + + G C+V S R+A R AI+S L
Sbjct: 216 ERMRPVKQVSKNYDDLNLCLDTIA--EGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALA 273
Query: 267 S----IVYGSLPPETRTRQA-----TRFNDAS---------------SEFDVLVASDAIG 302
+ ++ G+ +T A F+ A + + ++ +
Sbjct: 274 ACAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLA 333
Query: 303 MGLNLNISRIIFSTMKKFDGVE-LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL--DSED 359
GLNL R+I +F E ++ + V E +Q+AGRAGR P GE + ++E
Sbjct: 334 AGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLD-PYGEAVLIAKEAEQ 392
Query: 360 LPLLHKSLLE 369
+P L + +E
Sbjct: 393 VPELFEVYIE 402
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 71/283 (25%)
Query: 80 ILHVGPTNSGKTH-------QALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSC 128
++ + T SGKT QAL S G+ P R LA++++K + NV C
Sbjct: 92 LIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISKSFESLGSTINVRC 151
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+I G +D + ++ ++D ++ T+GFS R L + +
Sbjct: 152 AVIVGG----MDMVSQSIALGKKPHIIVATPGRLLDHLE----NTKGFSL-RTLKYLVMD 202
Query: 189 ELHLCGDPAAVPLIQQILQVTGDD-----------VKVQSYERLSPLVPLNVPLGS--FS 235
E D PL+ +IL+V + KV+S +R S PL V + S +
Sbjct: 203 EADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQ 262
Query: 236 NIQT-------------------------GDCIVTFSR--HAIYRLKKAIESRGKHLCSI 268
+ T G + F+R H R+ + S G
Sbjct: 263 TVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLG------ 316
Query: 269 VYGSLPPETRTRQATRFND----ASSEFDVLVASDAIGMGLNL 307
+G++P + Q+ R S D+LVA+D GL++
Sbjct: 317 -FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ A++ + +G+N+ ++ + KF+G + LT E Q+ GRAGR G
Sbjct: 366 AVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3
PE=3 SV=1
Length = 472
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 71/283 (25%)
Query: 80 ILHVGPTNSGKTH-------QALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSC 128
++ + T SGKT QAL S G+ P R LA++++K + NV C
Sbjct: 92 LIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRC 151
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+I G +D + ++ ++D ++ T+GFS R L + +
Sbjct: 152 AVIVGG----MDMVSQSIALGKKPHIIVATPGRLLDHLE----NTKGFSL-RTLKYLVMD 202
Query: 189 ELHLCGDPAAVPLIQQILQVTGDD-----------VKVQSYERLSPLVPLNVPLGS--FS 235
E D PL+ +IL+V + KV+S +R S PL V + S +
Sbjct: 203 EADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQ 262
Query: 236 NIQT-------------------------GDCIVTFSR--HAIYRLKKAIESRGKHLCSI 268
+ T G + F+R H R+ + S G
Sbjct: 263 TVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLG------ 316
Query: 269 VYGSLPPETRTRQATRFND----ASSEFDVLVASDAIGMGLNL 307
+G++P + Q+ R S D+LVA+D GL++
Sbjct: 317 -FGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII--FSTMKKF 320
K +C I + L E +T+ T F +++ ++VA+ A GMG+N R++ + K
Sbjct: 265 KVVCGIYHAGLSNEHKTKTHTNF--INNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNI 322
Query: 321 DGVELRDLTVPEVKQIAGRAGRYGSK 346
+G Q GRAGR G K
Sbjct: 323 EGYY----------QEIGRAGRDGEK 338
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ A++ + +G+N+ ++ + KF+G + LT E Q+ GRAGR G
Sbjct: 369 AVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRG 419
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 74 KKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLA---WEVAKRLNKANV 126
+K + +++ V PT +GKT A S + + IY PLR LA +E RL + +
Sbjct: 35 RKGKNIMVSV-PTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAMEKYEELSRLRELGM 93
Query: 127 SCDLITGQEREEVDGAKHRAV---TVEMADVVSDYD--------CAVIDEIQMLGCKTRG 175
L G + D K V T E AD + +D VIDEI M+G + RG
Sbjct: 94 RVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLMVIDEIHMIGDEYRG 153
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
H S + L E R+ F + V+VA+ + G+NL +I + ++ +
Sbjct: 286 HGVSFHHAGLSNEQRSFIEKAFR--HRKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDL 343
Query: 324 ELRDLTVPEVKQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLL-EPSPM 373
+ L+ EVKQ+ GRAGR G ++ +G + + ++ + + EP P+
Sbjct: 344 GITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPV 395
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
V+V++ + G+NL R++ + ++FD + ++ V E +Q+AGRAGR G P G
Sbjct: 328 LKVVVSTTTLAAGVNLPARRVVVADYERFDPALGREEIPVLEYRQMAGRAGRPGLD-PYG 386
Query: 351 EVTCL 355
E +
Sbjct: 387 EAVLV 391
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 195 DPAAVPLIQQILQVTGDDVKV-----QSYERLSPLVPLNVPLGSFSNIQTGDCIV-TFSR 248
+P V L+ Q D + SY R S + PL + + G CIV T ++
Sbjct: 305 NPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT-----EHAKGGKCIVFTQTK 359
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL- 307
RL A+ K C ++G + R R F D F++LVA+D GL++
Sbjct: 360 RDADRLSYALARSFK--CEALHGDISQSQRERTLAGFRDG--HFNILVATDVAARGLDVP 415
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
N+ II EL + T V + GR GR G K G + S+D
Sbjct: 416 NVDLIIH--------YELPNNTETFVHR-TGRTGRAGKK---GSAILIYSQD 455
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP--EVKQIAGRAGR 342
V+ + + GLNL R+I K+FD V + +P E KQ+AGRAGR
Sbjct: 337 VIACTPTLAAGLNLPARRVIIRDYKRFD-VNYGSVPIPVLEYKQMAGRAGR 386
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
I SR ++ + ++ G H + +GS+ PE R T++ + E +++ A+ A G
Sbjct: 678 IYCLSRMDCEKVSERLQEFG-HKAAFYHGSMEPEQRAFIQTQW--SKDEINIICATVAFG 734
Query: 303 MGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
MG+N ++ +I ++ K ++ Q GRAGR G +
Sbjct: 735 MGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDGQR 770
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp28 PE=3 SV=1
Length = 662
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
AV ++Q +++ DD K + R+ ++ N FS I+ F LK+
Sbjct: 485 AVDRVEQRVEMISDDSK--KWRRVEEILESN----RFS-----PPIIIF-----VNLKRN 528
Query: 258 IESRGKHLCSI------VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NIS 310
IE+ K L +I ++GS E R R + + ++ D+LVA+D G G+++ N+S
Sbjct: 529 IEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTA--DILVATDIAGRGIDIPNVS 586
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
++ M K ++ + GR GR G +T L ED
Sbjct: 587 LVLNYNMAK---------SIEDYTHRIGRTGRAGKSGTA--ITFLGPED 624
>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=uap56 PE=1 SV=3
Length = 434
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 269 VYGSLPPETRTRQATRFNDASSEFD--VLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326
++G LP E R ++ F D FD + VA+D G G+++ I+ + +D +
Sbjct: 325 IHGGLPQEERIKRYKAFKD----FDKRICVATDVFGRGIDIERVNIVIN----YDMPDSP 376
Query: 327 DLTVPEVKQIAGRAGRYGSK 346
D + V GRAGR+G+K
Sbjct: 377 DSYLHRV----GRAGRFGTK 392
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFD-GVELRDLTVPEVKQIAGRAGR 342
V+ ++ + GLNL R+I + ++FD ++ + V E KQ+AGRAGR
Sbjct: 332 VISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGR 381
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ A++ + G+N+ + S++ K G E +L E+ Q+AGRAGR G
Sbjct: 524 VVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRG 574
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 46/272 (16%)
Query: 110 LRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
LR+ + K+++ + ++ D+I G +G + T + D+ VIDEI
Sbjct: 289 LRVGLGRIGKKVDVETSLDADIIVGT----YEGIDYLIRTKRLKDI----GTVVIDEIHS 340
Query: 169 LGCKTRG-----------FSFTRA----LLGICANELHLCGDPAA---------VPLIQQ 204
L + RG F F A L N L A VPL +
Sbjct: 341 LNLEERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELAKQLNAKLVLYNGRPVPLERH 400
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV-TFSRHAIYRLKKAIESRGK 263
I+ D K+ + + N+ + G C++ T+SR L KA++S+G
Sbjct: 401 IIFCKNDFAKLNIIKEIVKREWQNISKFGYR----GQCLIFTYSRKRAEYLAKALKSKGI 456
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+G + R + F A+ + +V + A+ G++ S +I ++ G
Sbjct: 457 K-AEFYHGGMEYIKRRKVEDDF--ANQKIQCVVTTAALSAGVDFPASTVILESLAM--GA 511
Query: 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
+ L E +Q+ GRAGR G +G+V L
Sbjct: 512 DW--LNPAEFQQMCGRAGRKGM-HEIGKVYLL 540
>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1
Length = 432
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ + ++H+ L +E G H ++ G +P + R R +F S + DVLVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGDLDVLVATDVAA 317
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella sp. (strain W3-18-1)
GN=rhlB PE=3 SV=1
Length = 439
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1
Length = 439
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ + ++H+ L +E G H ++ G +P + R R +F S + D+LVA+D
Sbjct: 261 VFSNTKHSCENLWSWLEGDG-HRVGLLTGDVPQKKRIRILEQFT--SGQLDILVATDVAA 317
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
GL+++ +++ +L D V +I GR GR G+K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGNK 353
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 74 KKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEV---AKRLNKANV 126
+K R V++ V PT +GKT A S + + + IY PLR LA E RL +
Sbjct: 35 RKGRNVVVSV-PTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAMEKFSELSRLRDLGL 93
Query: 127 SCDLITGQEREEVDGAK-HRAV--TVEMAD--------VVSDYDCAVIDEIQMLGCKTRG 175
+ G + D K + AV T E AD +++D V+DEI +G ++RG
Sbjct: 94 KVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLLVLDEIHTIGDESRG 153
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVG 350
V+VA+ + G+NL +I + ++ + LT E+KQ+ GRAGR G ++ +G
Sbjct: 314 VIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIG 371
>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rhlB PE=3 SV=1
Length = 435
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ + ++H+ L +E G H ++ G +P + R R +F E D+LVA+D
Sbjct: 261 VFSNTKHSCENLWAHLEGDG-HRVGLLTGDVPQKKRIRILEQFT--KGELDILVATDVAA 317
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
GL+++ +++ +L D V +I GR GR G K
Sbjct: 318 RGLHISDVSHVYN-------YDLPDDCEDYVHRI-GRTGRAGQK 353
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + R+ +++ ++G + G ET R+ + V+VA+ A GMG+N
Sbjct: 258 SRSKVERIAESLRNKGVSAQAYHAGL---ETSQREQVQRAFQRDNVQVVVATIAFGMGIN 314
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
+ R + FD ++ Q GRAGR P V + D LHK
Sbjct: 315 KSNVRFVV----HFD----LPRSIESYYQETGRAGR--DDLPAEAVLFYEPADYAWLHKI 364
Query: 367 LLE 369
LLE
Sbjct: 365 LLE 367
>sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis
thaliana GN=RH44 PE=5 SV=2
Length = 622
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 31/144 (21%)
Query: 226 PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY-----------GSLP 274
P+ V +G + T I+T RLKK I+ G +IV+ +L
Sbjct: 433 PVVVTIGETTKFITQQVIMTKESDKFSRLKKLIDDLGDDKTAIVFVNTRNKVDYIVKNLE 492
Query: 275 PETRTRQATRFNDASSE-------------FDVLVASDAIGMGLN-LNISRIIFSTMKKF 320
R R T S E F+VLV +D +G GL+ L+++++I +
Sbjct: 493 KVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVI-----NY 547
Query: 321 DGVELRDLTVPEVKQIAGRAGRYG 344
D DL + + GRAG+ G
Sbjct: 548 DMPNTMDLYTHRIGR-TGRAGKTG 570
>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP28 PE=3
SV=1
Length = 581
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRII-FSTMKKFDGVEL 325
+++GS + R + T F + SE VL+A+D G+++ N++ +I + +KKFD
Sbjct: 470 VIHGSKSQDMREQAITNFRNHESE--VLIATDVAARGIDIPNVTLVINYQMVKKFDEY-- 525
Query: 326 RDLTVPEVKQIA--GRAGRYGSKF 347
+ +I GRAG G F
Sbjct: 526 -------IHRIGRTGRAGNLGESF 542
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,908,430
Number of Sequences: 539616
Number of extensions: 8740466
Number of successful extensions: 22853
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 22752
Number of HSP's gapped (non-prelim): 98
length of query: 564
length of database: 191,569,459
effective HSP length: 123
effective length of query: 441
effective length of database: 125,196,691
effective search space: 55211740731
effective search space used: 55211740731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)