Query 008489
Match_columns 564
No_of_seqs 548 out of 3677
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 12:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 3.1E-91 6.8E-96 704.1 40.8 490 58-547 172-667 (700)
2 KOG0922 DEAH-box RNA helicase 100.0 1.8E-58 3.8E-63 479.7 19.1 432 76-535 65-573 (674)
3 KOG0924 mRNA splicing factor A 100.0 8.6E-57 1.9E-61 461.8 20.6 440 68-535 364-879 (1042)
4 KOG0923 mRNA splicing factor A 100.0 1.3E-56 2.8E-61 460.1 19.3 440 68-536 273-790 (902)
5 KOG0925 mRNA splicing factor A 100.0 1.2E-53 2.7E-58 425.0 12.3 430 75-536 60-571 (699)
6 COG1643 HrpA HrpA-like helicas 100.0 5E-52 1.1E-56 456.2 20.6 380 76-482 64-497 (845)
7 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.7E-50 1.7E-54 445.8 23.3 386 76-481 16-444 (819)
8 PRK11131 ATP-dependent RNA hel 100.0 1.9E-48 4.2E-53 441.9 28.1 434 76-535 88-603 (1294)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.2E-48 4.7E-53 443.1 24.5 383 76-487 81-522 (1283)
10 PRK11664 ATP-dependent RNA hel 100.0 2.2E-48 4.9E-53 435.1 23.9 386 76-482 19-450 (812)
11 KOG0926 DEAH-box RNA helicase 100.0 2.1E-47 4.6E-52 398.6 11.5 390 59-475 242-807 (1172)
12 KOG0920 ATP-dependent RNA heli 100.0 5.5E-41 1.2E-45 367.2 28.7 394 68-488 181-663 (924)
13 PRK02362 ski2-like helicase; P 100.0 4.5E-40 9.7E-45 371.2 30.6 409 41-463 8-513 (737)
14 PRK01172 ski2-like helicase; P 100.0 7.7E-40 1.7E-44 366.7 31.5 408 41-464 8-492 (674)
15 KOG0330 ATP-dependent RNA heli 100.0 2.3E-40 4.9E-45 323.0 18.5 296 40-357 67-405 (476)
16 PHA02653 RNA helicase NPH-II; 100.0 2E-39 4.4E-44 354.3 21.7 347 65-445 168-584 (675)
17 KOG0331 ATP-dependent RNA heli 100.0 7.6E-39 1.6E-43 332.1 23.0 298 40-359 97-448 (519)
18 PRK04837 ATP-dependent RNA hel 100.0 3.4E-38 7.3E-43 335.4 25.9 300 35-359 10-362 (423)
19 PRK10590 ATP-dependent RNA hel 100.0 2.8E-37 6E-42 330.8 28.3 296 41-359 8-352 (456)
20 PTZ00110 helicase; Provisional 100.0 2.8E-37 6.2E-42 335.9 27.9 297 40-359 136-484 (545)
21 PRK04537 ATP-dependent RNA hel 100.0 1.1E-37 2.5E-42 340.1 24.9 302 35-359 11-364 (572)
22 PRK11776 ATP-dependent RNA hel 100.0 1.2E-37 2.5E-42 334.8 24.2 302 35-359 6-349 (460)
23 PLN00206 DEAD-box ATP-dependen 100.0 4.6E-37 9.9E-42 333.2 27.4 300 34-359 122-475 (518)
24 PRK11192 ATP-dependent RNA hel 100.0 7.9E-37 1.7E-41 326.3 26.8 295 41-358 8-351 (434)
25 TIGR00614 recQ_fam ATP-depende 100.0 9.1E-37 2E-41 327.8 25.8 294 56-369 6-344 (470)
26 COG0513 SrmB Superfamily II DN 100.0 8.5E-37 1.8E-41 329.1 25.3 299 35-358 31-379 (513)
27 PRK11634 ATP-dependent RNA hel 100.0 9.5E-37 2.1E-41 334.8 26.0 299 35-358 8-351 (629)
28 PRK01297 ATP-dependent RNA hel 100.0 3.2E-36 7E-41 324.6 29.3 298 40-359 93-442 (475)
29 PRK00254 ski2-like helicase; P 100.0 8.4E-36 1.8E-40 335.7 31.8 324 41-375 8-406 (720)
30 COG1204 Superfamily II helicas 100.0 1.6E-36 3.5E-41 335.7 23.3 323 40-373 15-424 (766)
31 PLN03137 ATP-dependent DNA hel 100.0 1E-35 2.3E-40 331.0 27.0 304 42-368 445-797 (1195)
32 PTZ00424 helicase 45; Provisio 100.0 1.5E-35 3.3E-40 313.6 26.4 302 34-359 29-374 (401)
33 PRK11057 ATP-dependent DNA hel 100.0 2.9E-35 6.3E-40 324.4 29.2 308 42-372 10-357 (607)
34 KOG0345 ATP-dependent RNA heli 100.0 3.8E-36 8.3E-41 299.8 20.0 315 41-378 13-384 (567)
35 TIGR03817 DECH_helic helicase/ 100.0 6.4E-36 1.4E-40 334.4 23.3 296 41-359 21-386 (742)
36 PRK13767 ATP-dependent helicas 100.0 8.4E-35 1.8E-39 331.6 30.4 349 37-405 14-451 (876)
37 KOG0340 ATP-dependent RNA heli 100.0 2.3E-35 5.1E-40 284.8 21.4 304 35-361 9-364 (442)
38 KOG0333 U5 snRNP-like RNA heli 100.0 4.6E-35 9.9E-40 295.2 22.6 297 41-359 252-624 (673)
39 TIGR01389 recQ ATP-dependent D 100.0 2.2E-34 4.9E-39 318.0 28.0 297 57-372 9-345 (591)
40 KOG0338 ATP-dependent RNA heli 100.0 1.6E-35 3.4E-40 297.4 15.2 310 35-369 183-544 (691)
41 KOG0343 RNA Helicase [RNA proc 100.0 2.9E-35 6.4E-40 297.8 15.4 332 41-395 76-464 (758)
42 COG1201 Lhr Lhr-like helicases 100.0 9.4E-34 2E-38 309.7 26.4 347 37-403 4-413 (814)
43 KOG0342 ATP-dependent RNA heli 100.0 2.2E-34 4.8E-39 289.2 19.3 304 40-367 88-446 (543)
44 KOG0328 Predicted ATP-dependen 100.0 2.8E-34 6.1E-39 269.3 16.7 302 35-359 29-373 (400)
45 COG0514 RecQ Superfamily II DN 100.0 2.4E-33 5.2E-38 296.4 24.9 297 57-372 13-351 (590)
46 COG1202 Superfamily II helicas 100.0 5.3E-34 1.2E-38 290.0 18.2 306 40-360 200-554 (830)
47 KOG0332 ATP-dependent RNA heli 100.0 1.3E-33 2.9E-38 274.2 19.4 326 30-372 87-461 (477)
48 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-33 5.2E-38 302.2 22.9 311 57-372 106-505 (1230)
49 KOG0335 ATP-dependent RNA heli 100.0 2.6E-33 5.6E-38 286.1 21.1 298 40-359 80-444 (482)
50 KOG0326 ATP-dependent RNA heli 100.0 1.2E-33 2.7E-38 269.0 13.6 295 41-357 92-427 (459)
51 KOG0348 ATP-dependent RNA heli 100.0 1.2E-32 2.6E-37 278.2 20.6 311 41-373 143-568 (708)
52 KOG0948 Nuclear exosomal RNA h 100.0 2.4E-33 5.2E-38 292.2 10.9 309 62-377 130-559 (1041)
53 PRK09751 putative ATP-dependen 100.0 3.8E-31 8.3E-36 306.3 27.7 309 82-403 1-436 (1490)
54 KOG0339 ATP-dependent RNA heli 100.0 7.7E-31 1.7E-35 263.4 22.6 295 41-359 230-575 (731)
55 KOG0336 ATP-dependent RNA heli 100.0 5.5E-31 1.2E-35 258.2 20.2 298 40-359 226-573 (629)
56 KOG0347 RNA helicase [RNA proc 100.0 1.5E-31 3.2E-36 271.1 15.9 303 29-358 177-569 (731)
57 COG4581 Superfamily II RNA hel 100.0 7.3E-31 1.6E-35 290.7 22.8 320 61-388 119-568 (1041)
58 TIGR00580 mfd transcription-re 100.0 1.6E-30 3.4E-35 293.8 25.2 282 57-359 448-770 (926)
59 KOG0947 Cytoplasmic exosomal R 100.0 3.3E-31 7.1E-36 282.6 16.8 308 61-375 297-742 (1248)
60 PRK10917 ATP-dependent DNA hel 100.0 9E-30 1.9E-34 283.8 27.3 278 58-357 259-587 (681)
61 PRK10689 transcription-repair 100.0 1.5E-29 3.2E-34 291.8 26.9 282 57-358 597-918 (1147)
62 TIGR00643 recG ATP-dependent D 100.0 2.1E-29 4.6E-34 279.0 25.9 287 45-357 225-564 (630)
63 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-30 7.5E-35 280.8 18.2 333 28-372 283-716 (1674)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.1E-29 2.4E-34 264.6 21.3 267 79-359 1-336 (358)
65 KOG0341 DEAD-box protein abstr 100.0 1.4E-30 3E-35 253.8 12.0 293 41-359 177-528 (610)
66 KOG0350 DEAD-box ATP-dependent 100.0 9.4E-31 2E-35 262.9 10.6 305 45-369 148-551 (620)
67 KOG0346 RNA helicase [RNA proc 100.0 6.4E-30 1.4E-34 253.2 15.9 302 33-359 19-410 (569)
68 KOG0344 ATP-dependent RNA heli 100.0 9.3E-28 2E-32 247.0 20.4 298 40-359 142-495 (593)
69 KOG0334 RNA helicase [RNA proc 100.0 6.2E-28 1.4E-32 262.9 19.6 297 40-358 371-719 (997)
70 PHA02558 uvsW UvsW helicase; P 100.0 3.4E-27 7.4E-32 255.1 22.8 278 60-357 113-453 (501)
71 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.4E-27 1.6E-31 257.2 23.1 268 58-346 13-380 (844)
72 KOG0327 Translation initiation 99.9 5.1E-27 1.1E-31 230.5 18.1 315 34-374 27-389 (397)
73 KOG0352 ATP-dependent DNA heli 99.9 4.5E-27 9.7E-32 232.0 17.0 295 43-359 5-362 (641)
74 KOG4284 DEAD box protein [Tran 99.9 1.6E-27 3.6E-32 245.3 11.7 297 41-359 32-379 (980)
75 KOG0337 ATP-dependent RNA heli 99.9 1.8E-26 3.8E-31 227.9 14.9 306 35-365 23-375 (529)
76 KOG0351 ATP-dependent DNA heli 99.9 3.1E-26 6.7E-31 255.8 16.8 293 57-370 260-604 (941)
77 COG1111 MPH1 ERCC4-like helica 99.9 1.6E-25 3.5E-30 227.3 19.3 106 239-359 365-481 (542)
78 TIGR03158 cas3_cyano CRISPR-as 99.9 4E-25 8.8E-30 228.9 20.8 254 68-341 5-357 (357)
79 COG1205 Distinct helicase fami 99.9 1.4E-24 3.1E-29 244.1 21.1 295 42-358 56-421 (851)
80 KOG0353 ATP-dependent DNA heli 99.9 5.6E-25 1.2E-29 214.2 14.0 314 13-357 57-465 (695)
81 PRK14701 reverse gyrase; Provi 99.9 4.9E-24 1.1E-28 251.7 20.5 275 57-346 76-446 (1638)
82 TIGR00603 rad25 DNA repair hel 99.9 2.3E-23 4.9E-28 227.5 22.6 275 60-359 254-607 (732)
83 PRK13766 Hef nuclease; Provisi 99.9 2.3E-23 4.9E-28 238.0 23.1 105 238-358 364-478 (773)
84 PRK09401 reverse gyrase; Revie 99.9 8.4E-24 1.8E-28 244.8 19.2 267 57-341 77-429 (1176)
85 COG1197 Mfd Transcription-repa 99.9 2.2E-23 4.8E-28 231.7 17.8 331 7-359 523-913 (1139)
86 KOG0950 DNA polymerase theta/e 99.9 4.3E-23 9.2E-28 222.7 18.5 330 35-377 201-630 (1008)
87 COG1200 RecG RecG-like helicas 99.9 1.4E-22 3E-27 214.3 20.9 278 61-359 262-591 (677)
88 PRK12898 secA preprotein trans 99.9 2.7E-22 6E-27 216.7 22.7 107 240-363 474-590 (656)
89 PRK09200 preprotein translocas 99.9 1.2E-21 2.6E-26 216.2 27.0 108 239-363 428-545 (790)
90 KOG0354 DEAD-box like helicase 99.9 1.6E-22 3.6E-27 216.7 19.4 102 241-358 415-528 (746)
91 PRK05580 primosome assembly pr 99.9 1.5E-21 3.2E-26 217.2 24.1 290 60-356 143-546 (679)
92 PRK09694 helicase Cas3; Provis 99.9 1E-21 2.2E-26 220.4 21.1 271 59-345 284-664 (878)
93 COG4098 comFA Superfamily II D 99.9 3.7E-21 8E-26 186.2 21.6 285 60-358 96-415 (441)
94 TIGR01054 rgy reverse gyrase. 99.9 5.5E-22 1.2E-26 230.1 19.1 251 58-320 75-410 (1171)
95 TIGR03714 secA2 accessory Sec 99.9 4.8E-21 1.1E-25 209.4 25.2 103 239-359 424-537 (762)
96 TIGR00595 priA primosomal prot 99.9 2.1E-21 4.5E-26 208.7 20.5 268 81-355 1-377 (505)
97 TIGR00963 secA preprotein tran 99.9 2.5E-20 5.4E-25 202.7 25.0 104 239-359 405-517 (745)
98 COG1061 SSL2 DNA or RNA helica 99.9 3.4E-21 7.5E-26 204.5 18.0 267 59-345 34-378 (442)
99 KOG0921 Dosage compensation co 99.9 1.9E-22 4.2E-27 214.3 7.8 441 9-474 314-877 (1282)
100 PRK04914 ATP-dependent helicas 99.8 7.3E-20 1.6E-24 206.7 23.6 112 238-359 492-605 (956)
101 KOG0349 Putative DEAD-box RNA 99.8 2.3E-20 4.9E-25 185.0 10.7 107 237-357 503-613 (725)
102 PRK11448 hsdR type I restricti 99.8 4E-18 8.6E-23 196.8 22.6 282 60-355 412-814 (1123)
103 KOG0329 ATP-dependent RNA heli 99.8 7.8E-20 1.7E-24 170.0 6.8 282 34-359 43-355 (387)
104 KOG0949 Predicted helicase, DE 99.8 1.5E-18 3.2E-23 186.8 15.3 110 265-385 964-1073(1330)
105 COG1203 CRISPR-associated heli 99.8 7.7E-18 1.7E-22 189.4 19.9 270 76-359 212-550 (733)
106 PRK13104 secA preprotein trans 99.7 1.4E-16 3E-21 175.9 21.8 105 241-353 446-581 (896)
107 PRK12906 secA preprotein trans 99.7 2.9E-16 6.3E-21 172.5 21.4 104 239-359 440-553 (796)
108 PRK12904 preprotein translocas 99.7 8E-16 1.7E-20 169.8 22.9 99 240-355 431-569 (830)
109 KOG0951 RNA helicase BRR2, DEA 99.7 6.9E-16 1.5E-20 170.1 18.3 303 59-374 1141-1510(1674)
110 PLN03142 Probable chromatin-re 99.7 5E-15 1.1E-19 168.4 22.6 110 239-359 486-599 (1033)
111 COG1198 PriA Primosomal protei 99.6 1.8E-14 3.9E-19 157.8 21.1 301 60-368 197-613 (730)
112 PRK13107 preprotein translocas 99.6 2.5E-14 5.5E-19 157.7 22.3 95 241-352 451-584 (908)
113 cd00268 DEADc DEAD-box helicas 99.6 9.7E-15 2.1E-19 139.6 13.8 158 41-206 6-192 (203)
114 PF00271 Helicase_C: Helicase 99.6 4.4E-15 9.5E-20 119.0 8.9 76 257-344 2-78 (78)
115 PRK12899 secA preprotein trans 99.6 1.8E-13 4E-18 151.3 23.5 113 57-171 85-229 (970)
116 COG1110 Reverse gyrase [DNA re 99.6 4.3E-14 9.2E-19 154.4 16.3 249 60-320 81-418 (1187)
117 PF12513 SUV3_C: Mitochondrial 99.5 1.5E-14 3.3E-19 103.6 6.8 49 492-540 1-49 (49)
118 TIGR00348 hsdR type I site-spe 99.5 2.1E-13 4.6E-18 152.0 19.1 269 77-357 263-649 (667)
119 COG4096 HsdR Type I site-speci 99.5 1.7E-13 3.7E-18 147.7 15.9 274 60-346 164-528 (875)
120 PF00270 DEAD: DEAD/DEAH box h 99.5 2.3E-14 4.9E-19 132.6 7.0 136 63-200 1-163 (169)
121 cd00079 HELICc Helicase superf 99.5 1.2E-13 2.7E-18 121.7 11.3 102 238-354 27-130 (131)
122 COG0556 UvrB Helicase subunit 99.5 4.8E-12 1E-16 130.0 22.5 116 241-367 448-565 (663)
123 KOG0385 Chromatin remodeling c 99.5 7.1E-12 1.5E-16 133.2 22.6 111 238-359 485-599 (971)
124 KOG1123 RNA polymerase II tran 99.4 6.6E-13 1.4E-17 134.7 12.8 283 59-359 300-653 (776)
125 smart00490 HELICc helicase sup 99.4 4.8E-13 1E-17 107.6 8.9 80 253-344 2-82 (82)
126 TIGR00631 uvrb excinuclease AB 99.4 2.5E-12 5.4E-17 142.1 13.1 109 240-359 443-553 (655)
127 PRK05298 excinuclease ABC subu 99.3 8.9E-12 1.9E-16 138.7 13.5 108 240-358 447-556 (652)
128 PRK12326 preprotein translocas 99.3 2.4E-10 5.2E-15 123.9 22.1 101 69-171 85-212 (764)
129 TIGR01407 dinG_rel DnaQ family 99.3 1.4E-10 3.1E-15 133.4 20.4 116 238-358 673-814 (850)
130 smart00487 DEXDc DEAD-like hel 99.2 1.2E-10 2.5E-15 109.8 12.1 127 57-185 4-157 (201)
131 PRK13103 secA preprotein trans 99.2 8.4E-10 1.8E-14 122.5 20.1 92 80-171 98-216 (913)
132 cd00046 DEXDc DEAD-like helica 99.2 1.3E-10 2.8E-15 103.0 10.4 95 78-172 1-118 (144)
133 KOG0384 Chromodomain-helicase 99.2 3.5E-10 7.5E-15 126.1 15.2 111 238-359 697-811 (1373)
134 KOG0387 Transcription-coupled 99.2 3.2E-09 7E-14 113.9 21.7 112 238-359 544-658 (923)
135 KOG4150 Predicted ATP-dependen 99.2 2.1E-11 4.5E-16 125.5 4.7 276 58-346 283-630 (1034)
136 PF02399 Herpes_ori_bp: Origin 99.1 2E-09 4.4E-14 117.7 18.3 264 75-357 47-386 (824)
137 COG4889 Predicted helicase [Ge 99.1 5.6E-10 1.2E-14 120.2 13.3 80 266-354 502-583 (1518)
138 KOG1000 Chromatin remodeling p 99.1 2.1E-09 4.5E-14 109.6 16.5 131 239-379 492-625 (689)
139 PRK12900 secA preprotein trans 99.1 2E-09 4.2E-14 120.1 16.5 104 239-359 598-711 (1025)
140 KOG0390 DNA repair protein, SN 99.1 1.1E-08 2.4E-13 112.2 20.3 102 248-359 604-707 (776)
141 PRK14873 primosome assembly pr 99.0 6.8E-09 1.5E-13 114.8 18.6 91 81-171 164-271 (665)
142 PRK07246 bifunctional ATP-depe 99.0 4.1E-08 8.8E-13 112.0 21.3 112 238-358 646-783 (820)
143 TIGR02562 cas3_yersinia CRISPR 98.9 2.3E-08 5E-13 112.3 17.7 92 244-346 762-882 (1110)
144 KOG0392 SNF2 family DNA-depend 98.9 1.6E-08 3.5E-13 112.7 16.0 108 241-359 1342-1454(1549)
145 KOG0389 SNF2 family DNA-depend 98.9 1.6E-07 3.5E-12 101.0 22.9 111 238-359 775-888 (941)
146 PRK12903 secA preprotein trans 98.9 1E-07 2.2E-12 105.2 21.4 95 241-352 428-532 (925)
147 PF04851 ResIII: Type III rest 98.9 2.9E-09 6.3E-14 99.5 6.3 110 62-171 4-160 (184)
148 CHL00122 secA preprotein trans 98.9 3.3E-07 7.3E-12 101.8 22.7 96 77-172 89-211 (870)
149 PF07652 Flavi_DEAD: Flaviviru 98.8 4.2E-09 9.1E-14 92.2 5.7 93 76-170 3-108 (148)
150 PRK12902 secA preprotein trans 98.6 8.1E-06 1.7E-10 90.9 22.5 92 80-171 101-219 (939)
151 KOG0386 Chromatin remodeling c 98.4 1.5E-06 3.2E-11 96.0 10.9 108 240-358 727-837 (1157)
152 KOG1002 Nucleotide excision re 98.4 7.9E-06 1.7E-10 83.9 15.0 86 264-359 663-749 (791)
153 PF00176 SNF2_N: SNF2 family N 98.2 7.6E-06 1.6E-10 82.8 11.4 114 76-192 24-167 (299)
154 KOG1802 RNA helicase nonsense 98.1 2.3E-05 5E-10 83.3 12.3 74 56-131 405-484 (935)
155 PF13086 AAA_11: AAA domain; P 98.1 1.2E-05 2.7E-10 77.9 9.6 60 62-123 2-75 (236)
156 KOG0952 DNA/RNA helicase MER3/ 98.1 1.7E-06 3.6E-11 96.1 2.3 150 61-211 927-1105(1230)
157 PF13604 AAA_30: AAA domain; P 98.0 1.1E-05 2.4E-10 76.5 6.5 125 62-199 2-133 (196)
158 KOG4439 RNA polymerase II tran 98.0 0.00036 7.9E-09 75.0 17.6 93 256-359 764-858 (901)
159 COG0610 Type I site-specific r 97.9 0.00011 2.4E-09 85.3 14.7 70 279-357 581-651 (962)
160 KOG1803 DNA helicase [Replicat 97.8 4.4E-05 9.6E-10 80.9 7.7 61 61-122 185-250 (649)
161 TIGR00376 DNA helicase, putati 97.8 0.00012 2.6E-09 81.6 11.4 68 60-128 156-228 (637)
162 PF13245 AAA_19: Part of AAA d 97.8 8.7E-05 1.9E-09 58.7 6.6 46 76-121 9-62 (76)
163 PRK08074 bifunctional ATP-depe 97.6 0.00018 3.8E-09 84.0 9.6 45 76-120 275-324 (928)
164 PF09848 DUF2075: Uncharacteri 97.6 7.8E-05 1.7E-09 77.5 5.5 82 78-171 2-97 (352)
165 TIGR03117 cas_csf4 CRISPR-asso 97.4 0.00029 6.2E-09 77.7 7.3 58 76-133 15-85 (636)
166 PRK12901 secA preprotein trans 97.4 0.0023 4.9E-08 72.8 14.3 94 239-346 627-731 (1112)
167 PF04408 HA2: Helicase associa 97.4 0.00011 2.3E-09 61.9 2.6 69 419-491 2-71 (102)
168 TIGR01448 recD_rel helicase, p 97.2 0.00086 1.9E-08 76.0 8.3 126 60-199 322-455 (720)
169 KOG0391 SNF2 family DNA-depend 97.2 0.0024 5.1E-08 72.3 11.2 109 240-359 1276-1387(1958)
170 PF13307 Helicase_C_2: Helicas 97.1 0.001 2.2E-08 61.4 6.6 117 236-358 6-150 (167)
171 smart00847 HA2 Helicase associ 97.1 0.00068 1.5E-08 55.7 4.8 62 419-484 2-65 (92)
172 TIGR01447 recD exodeoxyribonuc 97.0 0.002 4.4E-08 71.0 9.0 54 68-123 153-215 (586)
173 PRK06526 transposase; Provisio 97.0 0.00094 2E-08 65.9 5.5 73 76-170 97-172 (254)
174 PF02562 PhoH: PhoH-like prote 97.0 0.0011 2.4E-08 62.8 5.5 48 63-112 6-60 (205)
175 PRK08181 transposase; Validate 96.9 0.0015 3.2E-08 64.9 6.1 74 76-171 105-181 (269)
176 PF13401 AAA_22: AAA domain; P 96.9 0.0016 3.5E-08 57.0 5.6 23 76-98 3-25 (131)
177 PF01443 Viral_helicase1: Vira 96.9 0.0013 2.8E-08 64.1 5.2 96 80-199 1-100 (234)
178 PF06862 DUF1253: Protein of u 96.9 0.08 1.7E-06 55.9 18.6 112 238-358 299-414 (442)
179 PRK04296 thymidine kinase; Pro 96.9 0.00045 9.8E-09 65.2 1.9 33 77-109 2-38 (190)
180 smart00382 AAA ATPases associa 96.8 0.00047 1E-08 60.4 1.5 36 77-112 2-41 (148)
181 KOG1805 DNA replication helica 96.8 0.0049 1.1E-07 69.0 9.3 113 59-172 667-811 (1100)
182 KOG0388 SNF2 family DNA-depend 96.8 0.0062 1.4E-07 65.8 9.4 107 241-359 1046-1154(1185)
183 PRK08074 bifunctional ATP-depe 96.8 0.0041 8.9E-08 72.7 8.9 117 238-358 751-893 (928)
184 PRK10875 recD exonuclease V su 96.8 0.0034 7.5E-08 69.4 7.8 58 64-123 155-221 (615)
185 cd00009 AAA The AAA+ (ATPases 96.7 0.0026 5.5E-08 56.2 5.6 34 76-109 18-55 (151)
186 PRK08727 hypothetical protein; 96.7 0.0039 8.5E-08 60.8 7.2 63 77-171 41-107 (233)
187 COG3973 Superfamily I DNA and 96.7 0.0026 5.6E-08 67.9 6.2 83 40-127 189-286 (747)
188 PRK12723 flagellar biosynthesi 96.7 0.0038 8.2E-08 65.2 7.4 83 77-170 174-267 (388)
189 COG1484 DnaC DNA replication p 96.7 0.0032 7E-08 62.1 6.5 75 76-171 104-181 (254)
190 PF01695 IstB_IS21: IstB-like 96.7 0.0013 2.9E-08 61.2 3.5 72 76-169 46-120 (178)
191 PRK12377 putative replication 96.7 0.0044 9.6E-08 60.8 7.2 73 77-170 101-176 (248)
192 COG0553 HepA Superfamily II DN 96.7 0.0085 1.8E-07 70.0 10.7 108 241-359 713-822 (866)
193 PF07517 SecA_DEAD: SecA DEAD- 96.6 0.0051 1.1E-07 60.7 7.1 108 60-171 76-211 (266)
194 KOG0391 SNF2 family DNA-depend 96.6 0.0027 5.8E-08 71.9 5.2 126 68-196 626-775 (1958)
195 smart00488 DEXDc2 DEAD-like he 96.5 0.0043 9.3E-08 62.6 6.2 49 76-124 26-84 (289)
196 smart00489 DEXDc3 DEAD-like he 96.5 0.0043 9.3E-08 62.6 6.2 49 76-124 26-84 (289)
197 PRK06921 hypothetical protein; 96.5 0.0057 1.2E-07 60.8 6.8 69 76-168 116-188 (266)
198 PRK07952 DNA replication prote 96.5 0.0083 1.8E-07 58.7 7.7 75 78-172 100-177 (244)
199 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.005 1.1E-07 59.6 6.1 20 76-95 37-56 (226)
200 PRK10536 hypothetical protein; 96.5 0.0023 5E-08 62.4 3.5 51 59-111 57-114 (262)
201 COG0653 SecA Preprotein transl 96.4 0.093 2E-06 59.1 16.0 94 77-170 93-213 (822)
202 PF13173 AAA_14: AAA domain 96.4 0.016 3.4E-07 50.8 7.9 32 76-107 1-35 (128)
203 PF00580 UvrD-helicase: UvrD/R 96.3 0.0043 9.2E-08 63.0 4.9 48 76-123 12-67 (315)
204 PF05496 RuvB_N: Holliday junc 96.3 0.0074 1.6E-07 57.5 5.7 18 78-95 51-68 (233)
205 TIGR02768 TraA_Ti Ti-type conj 96.3 0.0089 1.9E-07 68.1 7.4 98 60-171 351-453 (744)
206 COG1199 DinG Rad3-related DNA 96.3 0.028 6.1E-07 63.6 11.5 116 238-359 478-618 (654)
207 PRK06893 DNA replication initi 96.3 0.0051 1.1E-07 59.8 4.7 18 77-94 39-56 (229)
208 PF05970 PIF1: PIF1-like helic 96.3 0.0065 1.4E-07 63.4 5.8 91 74-171 19-116 (364)
209 PRK08116 hypothetical protein; 96.2 0.011 2.4E-07 58.9 6.9 73 78-169 115-190 (268)
210 PRK08084 DNA replication initi 96.2 0.012 2.7E-07 57.4 7.1 18 77-94 45-62 (235)
211 KOG1016 Predicted DNA helicase 96.2 0.12 2.7E-06 56.7 14.6 83 266-358 764-848 (1387)
212 PRK11747 dinG ATP-dependent DN 96.1 0.033 7.2E-07 63.2 11.0 114 239-358 534-674 (697)
213 PRK15483 type III restriction- 96.1 0.03 6.6E-07 64.2 10.5 46 77-122 59-110 (986)
214 PRK14964 DNA polymerase III su 96.1 0.0079 1.7E-07 64.6 5.6 18 77-94 35-52 (491)
215 TIGR03499 FlhF flagellar biosy 96.1 0.013 2.8E-07 58.8 6.6 80 76-166 193-281 (282)
216 PRK13826 Dtr system oriT relax 96.1 0.023 4.9E-07 66.5 9.3 120 60-197 380-506 (1102)
217 KOG0921 Dosage compensation co 96.0 2.3E-05 5.1E-10 85.7 -14.3 146 238-391 651-812 (1282)
218 PRK06835 DNA replication prote 95.9 0.016 3.5E-07 59.3 6.6 75 76-170 182-259 (329)
219 PRK09183 transposase/IS protei 95.9 0.018 3.9E-07 57.1 6.6 73 76-171 101-178 (259)
220 PRK08903 DnaA regulatory inact 95.9 0.02 4.4E-07 55.5 6.8 18 77-94 42-59 (227)
221 PRK11747 dinG ATP-dependent DN 95.9 0.011 2.5E-07 66.8 5.7 44 77-120 49-97 (697)
222 PRK14722 flhF flagellar biosyn 95.7 0.023 5.1E-07 58.9 6.9 83 76-169 136-227 (374)
223 PRK05703 flhF flagellar biosyn 95.7 0.071 1.5E-06 56.7 10.6 83 76-169 220-311 (424)
224 PRK08939 primosomal protein Dn 95.6 0.026 5.6E-07 57.3 6.6 71 76-170 155-230 (306)
225 TIGR03117 cas_csf4 CRISPR-asso 95.6 0.037 8E-07 61.3 8.1 118 238-358 469-616 (636)
226 PRK13889 conjugal transfer rel 95.5 0.02 4.3E-07 66.6 6.1 120 60-197 345-471 (988)
227 PRK14960 DNA polymerase III su 95.5 0.013 2.8E-07 64.5 4.3 19 77-95 37-55 (702)
228 PRK11823 DNA repair protein Ra 95.5 0.029 6.2E-07 60.1 6.9 81 76-170 79-169 (446)
229 COG1419 FlhF Flagellar GTP-bin 95.5 0.031 6.7E-07 57.8 6.8 82 76-168 202-292 (407)
230 COG1199 DinG Rad3-related DNA 95.5 0.016 3.5E-07 65.5 5.4 66 57-122 11-84 (654)
231 PF13555 AAA_29: P-loop contai 95.5 0.016 3.5E-07 43.5 3.5 25 77-101 23-49 (62)
232 COG2256 MGS1 ATPase related to 95.5 0.05 1.1E-06 55.9 8.0 92 77-198 48-141 (436)
233 PF00448 SRP54: SRP54-type pro 95.5 0.029 6.2E-07 53.1 5.9 84 78-169 2-95 (196)
234 PRK14956 DNA polymerase III su 95.4 0.0067 1.4E-07 64.6 1.6 19 78-96 41-59 (484)
235 PRK06645 DNA polymerase III su 95.4 0.022 4.7E-07 61.7 5.5 17 78-94 44-60 (507)
236 PRK14958 DNA polymerase III su 95.4 0.016 3.4E-07 63.1 4.4 17 78-94 39-55 (509)
237 PRK00149 dnaA chromosomal repl 95.3 0.027 5.9E-07 60.6 6.0 71 78-171 149-225 (450)
238 cd01121 Sms Sms (bacterial rad 95.3 0.042 9.2E-07 57.3 7.0 81 76-170 81-171 (372)
239 PTZ00293 thymidine kinase; Pro 95.2 0.031 6.6E-07 53.1 5.2 82 76-170 3-90 (211)
240 PF00265 TK: Thymidine kinase; 95.2 0.11 2.3E-06 48.3 8.7 34 77-110 1-38 (176)
241 PRK14974 cell division protein 95.2 0.029 6.2E-07 57.6 5.3 88 77-171 140-236 (336)
242 COG1618 Predicted nucleotide k 95.1 0.068 1.5E-06 48.0 6.8 19 78-96 6-24 (179)
243 PRK14952 DNA polymerase III su 95.1 0.03 6.5E-07 61.7 5.6 18 154-171 115-132 (584)
244 PRK07003 DNA polymerase III su 95.1 0.019 4.1E-07 64.0 4.0 18 78-95 39-56 (830)
245 PRK07764 DNA polymerase III su 95.1 0.028 6.1E-07 64.4 5.5 19 77-95 37-55 (824)
246 TIGR00604 rad3 DNA repair heli 95.1 0.032 6.9E-07 63.6 5.8 65 57-123 6-82 (705)
247 PF05621 TniB: Bacterial TniB 95.1 0.014 3E-07 58.3 2.5 84 78-171 62-159 (302)
248 PRK14961 DNA polymerase III su 95.0 0.024 5.1E-07 59.2 4.4 18 78-95 39-56 (363)
249 cd01120 RecA-like_NTPases RecA 95.0 0.021 4.6E-07 51.5 3.5 30 79-108 1-34 (165)
250 KOG0989 Replication factor C, 95.0 0.024 5.2E-07 56.0 3.8 21 76-96 56-76 (346)
251 PRK05642 DNA replication initi 94.9 0.073 1.6E-06 51.9 7.2 61 78-170 46-110 (234)
252 smart00492 HELICc3 helicase su 94.9 0.19 4.2E-06 44.7 9.3 86 269-357 27-137 (141)
253 TIGR00362 DnaA chromosomal rep 94.9 0.039 8.5E-07 58.5 5.7 71 78-171 137-213 (405)
254 COG2804 PulE Type II secretory 94.8 0.033 7.1E-07 59.1 4.5 29 68-96 249-277 (500)
255 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.034 7.5E-07 54.3 4.5 51 76-127 20-74 (237)
256 PF00308 Bac_DnaA: Bacterial d 94.8 0.083 1.8E-06 51.0 7.0 71 78-171 35-111 (219)
257 PRK05563 DNA polymerase III su 94.8 0.032 7E-07 61.5 4.6 18 77-94 38-55 (559)
258 PRK12726 flagellar biosynthesi 94.7 0.051 1.1E-06 56.2 5.5 83 76-169 205-297 (407)
259 PRK00080 ruvB Holliday junctio 94.7 0.049 1.1E-06 56.0 5.6 20 77-96 51-70 (328)
260 PHA03368 DNA packaging termina 94.7 0.38 8.2E-06 53.0 12.3 121 43-172 229-367 (738)
261 PHA00729 NTP-binding motif con 94.7 0.11 2.5E-06 49.9 7.6 20 77-96 17-36 (226)
262 PRK13851 type IV secretion sys 94.7 0.023 5E-07 58.5 3.0 39 75-113 160-201 (344)
263 cd01124 KaiC KaiC is a circadi 94.7 0.043 9.4E-07 51.1 4.7 48 79-127 1-52 (187)
264 PRK14965 DNA polymerase III su 94.7 0.032 6.8E-07 61.8 4.3 19 153-171 115-133 (576)
265 PRK11889 flhF flagellar biosyn 94.6 0.079 1.7E-06 55.0 6.7 82 77-169 241-332 (436)
266 PRK12727 flagellar biosynthesi 94.6 0.066 1.4E-06 57.7 6.3 83 76-169 349-440 (559)
267 PRK04195 replication factor C 94.6 0.064 1.4E-06 58.3 6.4 24 77-100 39-62 (482)
268 PF06745 KaiC: KaiC; InterPro 94.6 0.042 9.2E-07 53.2 4.5 51 76-127 18-73 (226)
269 PRK07994 DNA polymerase III su 94.6 0.015 3.3E-07 64.4 1.5 16 79-94 40-55 (647)
270 PRK10416 signal recognition pa 94.5 0.053 1.1E-06 55.4 5.1 87 76-170 113-209 (318)
271 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.1 2.2E-06 51.7 7.1 52 76-127 35-93 (259)
272 PRK14949 DNA polymerase III su 94.5 0.014 3.1E-07 66.1 1.1 18 78-95 39-56 (944)
273 PRK00771 signal recognition pa 94.5 0.073 1.6E-06 56.6 6.3 86 77-169 95-187 (437)
274 TIGR02688 conserved hypothetic 94.5 0.065 1.4E-06 56.0 5.7 21 75-95 207-227 (449)
275 PRK08691 DNA polymerase III su 94.4 0.041 8.9E-07 61.1 4.5 19 77-95 38-56 (709)
276 PRK14951 DNA polymerase III su 94.4 0.038 8.3E-07 61.2 4.2 17 78-94 39-55 (618)
277 COG1219 ClpX ATP-dependent pro 94.3 0.039 8.6E-07 54.8 3.6 20 75-94 95-114 (408)
278 PRK14969 DNA polymerase III su 94.3 0.018 4E-07 62.9 1.4 17 78-94 39-55 (527)
279 TIGR00635 ruvB Holliday juncti 94.2 0.08 1.7E-06 53.8 5.7 19 78-96 31-49 (305)
280 PLN03025 replication factor C 94.2 0.22 4.8E-06 51.0 9.0 19 77-95 34-52 (319)
281 PF12340 DUF3638: Protein of u 94.1 0.12 2.6E-06 49.6 6.4 47 76-123 40-91 (229)
282 PRK12422 chromosomal replicati 94.1 0.093 2E-06 56.2 6.3 71 78-171 142-216 (445)
283 PRK12323 DNA polymerase III su 94.1 0.047 1E-06 60.1 3.9 17 78-94 39-55 (700)
284 COG2255 RuvB Holliday junction 94.1 0.092 2E-06 51.5 5.4 65 78-171 53-117 (332)
285 KOG0741 AAA+-type ATPase [Post 94.1 0.11 2.4E-06 55.0 6.3 55 156-211 323-391 (744)
286 PRK14712 conjugal transfer nic 94.0 0.14 3E-06 62.2 8.0 102 60-171 834-944 (1623)
287 PRK13709 conjugal transfer nic 94.0 0.15 3.2E-06 62.7 8.2 102 60-171 966-1076(1747)
288 PF05707 Zot: Zonular occluden 93.9 0.016 3.4E-07 54.8 -0.0 29 79-107 2-34 (193)
289 TIGR02782 TrbB_P P-type conjug 93.9 0.07 1.5E-06 54.0 4.7 38 76-113 131-174 (299)
290 COG2805 PilT Tfp pilus assembl 93.9 0.059 1.3E-06 53.3 3.9 23 72-94 120-142 (353)
291 PRK00411 cdc6 cell division co 93.9 0.29 6.2E-06 51.7 9.5 20 76-95 54-73 (394)
292 PRK14962 DNA polymerase III su 93.8 0.021 4.4E-07 61.6 0.7 18 78-95 37-54 (472)
293 PF02534 T4SS-DNA_transf: Type 93.8 0.087 1.9E-06 57.0 5.5 55 78-132 45-101 (469)
294 COG1875 NYN ribonuclease and A 93.8 0.075 1.6E-06 53.9 4.4 68 57-135 224-299 (436)
295 PRK05973 replicative DNA helic 93.8 0.081 1.8E-06 51.4 4.6 51 76-127 63-117 (237)
296 PRK06995 flhF flagellar biosyn 93.7 0.16 3.4E-06 54.6 7.1 81 76-167 255-344 (484)
297 PRK14087 dnaA chromosomal repl 93.7 0.11 2.5E-06 55.7 6.0 73 78-171 142-220 (450)
298 PRK13342 recombination factor 93.7 0.23 4.9E-06 52.9 8.3 20 77-96 36-55 (413)
299 cd01126 TraG_VirD4 The TraG/Tr 93.7 0.068 1.5E-06 56.3 4.2 54 79-132 1-56 (384)
300 PRK13341 recombination factor 93.6 0.26 5.7E-06 55.9 9.0 19 77-95 52-70 (725)
301 PRK12901 secA preprotein trans 93.6 0.15 3.2E-06 58.6 6.9 92 80-171 185-304 (1112)
302 PRK14957 DNA polymerase III su 93.6 0.064 1.4E-06 58.6 3.9 18 78-95 39-56 (546)
303 PF00437 T2SE: Type II/IV secr 93.6 0.047 1E-06 54.4 2.7 37 76-112 126-166 (270)
304 TIGR00604 rad3 DNA repair heli 93.6 0.25 5.4E-06 56.4 8.8 117 238-357 521-673 (705)
305 COG1474 CDC6 Cdc6-related prot 93.5 0.058 1.3E-06 56.1 3.3 26 69-94 34-59 (366)
306 PRK14959 DNA polymerase III su 93.5 0.062 1.3E-06 59.3 3.7 18 78-95 39-56 (624)
307 PHA02544 44 clamp loader, smal 93.5 0.2 4.4E-06 51.1 7.3 19 78-96 44-62 (316)
308 KOG0058 Peptide exporter, ABC 93.5 0.13 2.8E-06 56.7 6.1 45 76-120 493-542 (716)
309 PHA00350 putative assembly pro 93.5 0.61 1.3E-05 48.8 10.7 29 79-107 3-35 (399)
310 PRK13833 conjugal transfer pro 93.5 0.069 1.5E-06 54.5 3.7 38 76-113 143-186 (323)
311 KOG1015 Transcription regulato 93.5 0.22 4.9E-06 56.0 7.7 83 265-357 1190-1275(1567)
312 PRK13900 type IV secretion sys 93.5 0.051 1.1E-06 55.8 2.7 38 76-113 159-199 (332)
313 TIGR02760 TraI_TIGR conjugativ 93.4 0.19 4.1E-06 63.2 8.0 99 60-170 1018-1125(1960)
314 cd01129 PulE-GspE PulE/GspE Th 93.4 0.094 2E-06 52.1 4.4 26 69-94 72-97 (264)
315 TIGR00416 sms DNA repair prote 93.4 0.17 3.6E-06 54.4 6.5 81 76-170 93-183 (454)
316 PRK14955 DNA polymerase III su 93.3 0.053 1.2E-06 57.3 2.8 18 78-95 39-56 (397)
317 PF13207 AAA_17: AAA domain; P 93.3 0.058 1.3E-06 46.3 2.5 16 79-94 1-16 (121)
318 smart00491 HELICc2 helicase su 93.2 0.53 1.1E-05 42.0 8.6 77 277-357 32-138 (142)
319 PHA03333 putative ATPase subun 93.2 1.4 3E-05 48.9 13.3 98 75-172 185-309 (752)
320 PRK10436 hypothetical protein; 93.2 0.09 2E-06 56.4 4.3 26 69-94 210-235 (462)
321 PRK05896 DNA polymerase III su 93.2 0.1 2.2E-06 57.4 4.7 19 77-95 38-56 (605)
322 COG4962 CpaF Flp pilus assembl 93.1 0.086 1.9E-06 53.3 3.6 55 59-114 155-213 (355)
323 PRK14088 dnaA chromosomal repl 93.1 0.17 3.6E-06 54.2 6.1 71 78-171 131-208 (440)
324 PRK08533 flagellar accessory p 93.1 0.16 3.5E-06 49.4 5.5 50 76-126 23-76 (230)
325 PF05127 Helicase_RecD: Helica 93.1 0.021 4.6E-07 52.7 -0.7 90 81-170 1-103 (177)
326 PRK10865 protein disaggregatio 93.1 0.49 1.1E-05 55.1 10.2 20 75-94 197-216 (857)
327 cd00544 CobU Adenosylcobinamid 93.1 0.12 2.6E-06 47.7 4.2 44 80-123 2-46 (169)
328 PRK14723 flhF flagellar biosyn 93.1 0.16 3.5E-06 57.3 6.0 53 77-129 185-246 (767)
329 cd01130 VirB11-like_ATPase Typ 93.0 0.094 2E-06 49.1 3.7 20 75-94 23-42 (186)
330 TIGR01075 uvrD DNA helicase II 93.0 0.1 2.2E-06 59.7 4.6 61 60-124 3-72 (715)
331 PRK14950 DNA polymerase III su 93.0 0.12 2.5E-06 57.6 4.9 19 77-95 38-56 (585)
332 PRK10919 ATP-dependent DNA hel 92.9 0.11 2.4E-06 58.8 4.7 47 77-123 15-69 (672)
333 PRK14954 DNA polymerase III su 92.9 0.11 2.5E-06 57.6 4.6 18 78-95 39-56 (620)
334 PRK12900 secA preprotein trans 92.9 0.16 3.5E-06 58.2 5.8 91 81-171 155-272 (1025)
335 PRK07133 DNA polymerase III su 92.8 0.1 2.3E-06 58.5 4.1 19 153-171 114-132 (725)
336 PRK14963 DNA polymerase III su 92.8 0.076 1.6E-06 57.7 3.0 17 78-94 37-53 (504)
337 COG0467 RAD55 RecA-superfamily 92.7 0.14 3E-06 50.8 4.5 52 76-128 22-77 (260)
338 PF13871 Helicase_C_4: Helicas 92.7 0.28 6.2E-06 48.6 6.5 64 280-346 52-116 (278)
339 TIGR02760 TraI_TIGR conjugativ 92.7 0.13 2.7E-06 64.8 4.9 128 61-197 429-567 (1960)
340 PRK14729 miaA tRNA delta(2)-is 92.6 0.13 2.8E-06 51.8 4.1 25 76-100 3-27 (300)
341 KOG1015 Transcription regulato 92.6 0.28 6E-06 55.3 6.8 121 77-200 696-863 (1567)
342 PRK13897 type IV secretion sys 92.6 0.21 4.6E-06 55.3 6.1 57 76-132 157-215 (606)
343 PRK08451 DNA polymerase III su 92.6 0.13 2.9E-06 55.9 4.5 19 153-171 113-131 (535)
344 TIGR02655 circ_KaiC circadian 92.5 0.18 3.9E-06 54.8 5.4 51 76-127 262-316 (484)
345 PRK14953 DNA polymerase III su 92.5 0.11 2.3E-06 56.4 3.6 19 153-171 115-133 (486)
346 PLN02165 adenylate isopentenyl 92.5 0.13 2.8E-06 52.4 3.9 24 73-96 39-62 (334)
347 PRK11054 helD DNA helicase IV; 92.5 0.13 2.7E-06 58.2 4.2 60 60-123 195-263 (684)
348 PRK05800 cobU adenosylcobinami 92.4 0.15 3.3E-06 47.0 4.1 45 78-122 2-47 (170)
349 PRK11773 uvrD DNA-dependent he 92.4 0.12 2.7E-06 59.0 4.2 61 60-124 8-77 (721)
350 PRK14971 DNA polymerase III su 92.3 0.15 3.1E-06 57.0 4.5 20 152-171 116-135 (614)
351 COG1702 PhoH Phosphate starvat 92.3 0.096 2.1E-06 52.8 2.7 66 59-136 126-197 (348)
352 TIGR00767 rho transcription te 92.3 0.44 9.4E-06 49.8 7.6 20 76-95 167-186 (415)
353 PRK14086 dnaA chromosomal repl 92.3 0.27 5.8E-06 54.2 6.3 70 79-171 316-391 (617)
354 COG1435 Tdk Thymidine kinase [ 92.3 0.052 1.1E-06 50.4 0.7 34 76-109 3-40 (201)
355 PRK09111 DNA polymerase III su 92.2 0.094 2E-06 58.1 2.9 18 77-94 46-63 (598)
356 TIGR03880 KaiC_arch_3 KaiC dom 92.2 0.22 4.9E-06 48.0 5.1 51 76-127 15-69 (224)
357 TIGR02655 circ_KaiC circadian 92.2 0.23 4.9E-06 54.0 5.6 51 76-127 20-75 (484)
358 PRK04328 hypothetical protein; 92.1 0.19 4.1E-06 49.5 4.6 51 76-127 22-76 (249)
359 PRK14948 DNA polymerase III su 92.1 0.18 3.9E-06 56.3 4.8 19 77-95 38-56 (620)
360 PF12846 AAA_10: AAA-like doma 92.0 0.19 4.1E-06 50.5 4.6 38 77-114 1-42 (304)
361 TIGR03881 KaiC_arch_4 KaiC dom 92.0 0.26 5.7E-06 47.7 5.4 51 76-127 19-73 (229)
362 KOG0388 SNF2 family DNA-depend 92.0 0.38 8.3E-06 52.6 6.8 117 76-195 585-732 (1185)
363 COG1444 Predicted P-loop ATPas 92.0 0.6 1.3E-05 52.4 8.6 101 68-170 222-336 (758)
364 PRK14530 adenylate kinase; Pro 92.0 0.11 2.5E-06 49.8 2.8 21 76-96 2-22 (215)
365 PF13238 AAA_18: AAA domain; P 91.9 0.11 2.3E-06 45.0 2.3 15 80-94 1-15 (129)
366 PRK12724 flagellar biosynthesi 91.9 0.41 8.9E-06 50.3 6.9 53 76-128 222-282 (432)
367 PRK06067 flagellar accessory p 91.9 0.22 4.8E-06 48.4 4.8 52 76-128 24-79 (234)
368 TIGR02788 VirB11 P-type DNA tr 91.9 0.12 2.6E-06 52.6 3.0 19 76-94 143-161 (308)
369 PF13671 AAA_33: AAA domain; P 91.8 0.19 4E-06 44.5 3.8 24 79-102 1-24 (143)
370 PRK06647 DNA polymerase III su 91.8 0.16 3.5E-06 55.9 4.1 18 78-95 39-56 (563)
371 TIGR02538 type_IV_pilB type IV 91.8 0.17 3.7E-06 56.0 4.2 27 68-94 307-333 (564)
372 cd01131 PilT Pilus retraction 91.8 0.13 2.9E-06 48.7 2.9 16 79-94 3-18 (198)
373 COG0470 HolB ATPase involved i 91.7 0.55 1.2E-05 47.9 7.7 17 79-95 26-42 (325)
374 COG2812 DnaX DNA polymerase II 91.7 0.046 1E-06 58.8 -0.3 19 153-171 115-133 (515)
375 PRK13894 conjugal transfer ATP 91.7 0.17 3.6E-06 51.7 3.7 19 76-94 147-165 (319)
376 PRK07940 DNA polymerase III su 91.6 0.22 4.7E-06 52.4 4.6 19 77-95 36-54 (394)
377 PRK13850 type IV secretion sys 91.6 0.25 5.5E-06 55.4 5.3 60 73-132 135-196 (670)
378 TIGR02533 type_II_gspE general 91.4 0.16 3.5E-06 55.0 3.4 21 75-95 240-260 (486)
379 TIGR02524 dot_icm_DotB Dot/Icm 91.4 0.13 2.9E-06 53.3 2.7 19 76-94 133-151 (358)
380 TIGR02397 dnaX_nterm DNA polym 91.4 0.24 5.2E-06 51.4 4.7 17 78-94 37-53 (355)
381 TIGR02237 recomb_radB DNA repa 91.3 0.28 6.1E-06 46.7 4.6 32 76-107 11-46 (209)
382 PRK08233 hypothetical protein; 91.2 0.15 3.3E-06 47.2 2.7 21 76-96 2-22 (182)
383 cd01127 TrwB Bacterial conjuga 91.2 0.15 3.2E-06 54.3 2.9 42 75-116 40-85 (410)
384 PRK13764 ATPase; Provisional 91.1 0.26 5.6E-06 54.4 4.7 30 76-105 256-288 (602)
385 TIGR00064 ftsY signal recognit 91.1 0.53 1.2E-05 46.9 6.6 88 76-170 71-167 (272)
386 TIGR03263 guanyl_kin guanylate 91.1 0.15 3.4E-06 47.2 2.6 19 77-95 1-19 (180)
387 PF13872 AAA_34: P-loop contai 91.1 0.82 1.8E-05 45.7 7.7 97 76-172 61-187 (303)
388 TIGR03346 chaperone_ClpB ATP-d 91.1 1.2 2.5E-05 52.1 10.3 19 76-94 193-211 (852)
389 COG5008 PilU Tfp pilus assembl 91.0 0.25 5.3E-06 48.1 3.8 23 76-98 126-148 (375)
390 PF01745 IPT: Isopentenyl tran 91.0 0.23 4.9E-06 47.0 3.5 21 78-98 2-22 (233)
391 PRK00091 miaA tRNA delta(2)-is 90.9 0.25 5.5E-06 50.1 4.1 21 77-97 4-24 (307)
392 PRK08118 topology modulation p 90.9 0.16 3.5E-06 46.7 2.5 17 78-94 2-18 (167)
393 TIGR02639 ClpA ATP-dependent C 90.9 0.29 6.4E-06 56.0 5.1 16 79-94 486-501 (731)
394 PRK13822 conjugal transfer cou 90.9 0.4 8.6E-06 53.7 6.0 57 76-132 223-281 (641)
395 TIGR03345 VI_ClpV1 type VI sec 90.9 0.84 1.8E-05 53.0 8.8 19 76-94 207-225 (852)
396 KOG0745 Putative ATP-dependent 90.8 0.23 4.9E-06 51.5 3.6 28 75-102 224-253 (564)
397 PRK10867 signal recognition pa 90.8 0.58 1.3E-05 49.7 6.8 53 77-129 100-160 (433)
398 COG0563 Adk Adenylate kinase a 90.8 0.17 3.6E-06 47.1 2.4 17 79-95 2-18 (178)
399 TIGR01074 rep ATP-dependent DN 90.7 0.29 6.2E-06 55.6 4.8 47 77-123 14-68 (664)
400 COG0466 Lon ATP-dependent Lon 90.7 0.35 7.7E-06 53.3 5.1 89 75-186 348-445 (782)
401 PRK14970 DNA polymerase III su 90.7 0.092 2E-06 54.9 0.7 18 78-95 40-57 (367)
402 COG1221 PspF Transcriptional r 90.6 0.42 9E-06 49.9 5.5 86 75-172 99-188 (403)
403 cd01394 radB RadB. The archaea 90.5 0.35 7.7E-06 46.4 4.6 32 76-107 18-53 (218)
404 COG3854 SpoIIIAA ncharacterize 90.5 0.74 1.6E-05 44.0 6.4 18 77-94 137-154 (308)
405 cd00984 DnaB_C DnaB helicase C 90.5 0.64 1.4E-05 45.3 6.5 41 76-116 12-60 (242)
406 KOG2373 Predicted mitochondria 90.5 0.36 7.9E-06 48.6 4.6 47 76-122 272-325 (514)
407 TIGR01420 pilT_fam pilus retra 90.4 0.26 5.7E-06 51.0 3.9 20 75-94 120-139 (343)
408 KOG2340 Uncharacterized conser 90.4 1.8 4E-05 46.1 9.8 109 241-358 554-667 (698)
409 PRK00300 gmk guanylate kinase; 90.4 0.2 4.3E-06 47.5 2.8 20 76-95 4-23 (205)
410 PF07728 AAA_5: AAA domain (dy 90.4 0.19 4.1E-06 44.4 2.4 16 79-94 1-16 (139)
411 TIGR02012 tigrfam_recA protein 90.4 0.53 1.1E-05 48.0 5.8 79 76-170 54-146 (321)
412 PRK06305 DNA polymerase III su 90.4 0.26 5.6E-06 53.0 3.8 18 78-95 40-57 (451)
413 PF12775 AAA_7: P-loop contain 90.3 0.27 5.8E-06 49.1 3.7 26 75-100 31-56 (272)
414 TIGR00235 udk uridine kinase. 90.3 0.31 6.7E-06 46.5 4.0 19 76-94 5-23 (207)
415 TIGR01547 phage_term_2 phage t 90.3 0.82 1.8E-05 48.3 7.5 94 78-171 2-115 (396)
416 cd02023 UMPK Uridine monophosp 90.2 0.35 7.6E-06 45.7 4.2 15 80-94 2-16 (198)
417 cd00227 CPT Chloramphenicol (C 90.2 0.22 4.7E-06 46.1 2.8 19 77-95 2-20 (175)
418 PRK05480 uridine/cytidine kina 90.2 0.4 8.7E-06 45.7 4.6 19 76-94 5-23 (209)
419 PRK07261 topology modulation p 90.2 0.2 4.4E-06 46.2 2.5 18 79-96 2-19 (171)
420 TIGR01073 pcrA ATP-dependent D 90.2 0.32 7E-06 55.7 4.7 61 60-124 3-72 (726)
421 KOG2028 ATPase related to the 90.1 0.7 1.5E-05 47.0 6.2 94 78-200 163-261 (554)
422 PRK14721 flhF flagellar biosyn 90.1 0.57 1.2E-05 49.6 6.0 80 76-166 190-278 (420)
423 cd00983 recA RecA is a bacter 90.0 0.56 1.2E-05 47.8 5.7 48 77-127 55-106 (325)
424 KOG0733 Nuclear AAA ATPase (VC 90.0 0.44 9.6E-06 51.6 5.0 25 77-101 545-569 (802)
425 TIGR02525 plasmid_TraJ plasmid 89.9 0.21 4.6E-06 52.0 2.7 19 76-94 148-166 (372)
426 cd03115 SRP The signal recogni 89.8 0.65 1.4E-05 42.7 5.6 86 79-170 2-95 (173)
427 PF00004 AAA: ATPase family as 89.8 0.22 4.9E-06 43.1 2.3 16 80-95 1-16 (132)
428 PF00910 RNA_helicase: RNA hel 89.8 1.2 2.6E-05 37.5 6.8 15 80-94 1-15 (107)
429 PRK09361 radB DNA repair and r 89.8 0.45 9.9E-06 45.9 4.7 32 76-107 22-57 (225)
430 TIGR02767 TraG-Ti Ti-type conj 89.8 0.62 1.3E-05 51.9 6.2 56 77-132 211-269 (623)
431 PRK10078 ribose 1,5-bisphospho 89.8 0.24 5.1E-06 46.4 2.6 18 77-94 2-19 (186)
432 TIGR02639 ClpA ATP-dependent C 89.7 1.2 2.5E-05 51.2 8.6 19 76-94 202-220 (731)
433 TIGR00959 ffh signal recogniti 89.6 0.82 1.8E-05 48.6 6.8 53 77-129 99-159 (428)
434 TIGR02322 phosphon_PhnN phosph 89.6 0.25 5.4E-06 45.8 2.6 18 77-94 1-18 (179)
435 TIGR00631 uvrb excinuclease AB 89.6 0.63 1.4E-05 52.3 6.2 53 79-131 31-86 (655)
436 TIGR00678 holB DNA polymerase 89.5 1.2 2.7E-05 41.5 7.3 18 77-94 14-31 (188)
437 PRK09376 rho transcription ter 89.5 0.8 1.7E-05 47.7 6.4 20 75-94 167-186 (416)
438 PRK09112 DNA polymerase III su 89.5 0.86 1.9E-05 47.2 6.7 18 78-95 46-63 (351)
439 PRK00131 aroK shikimate kinase 89.4 0.27 5.9E-06 45.0 2.7 20 76-95 3-22 (175)
440 COG1126 GlnQ ABC-type polar am 89.3 0.25 5.5E-06 46.7 2.4 65 248-317 141-211 (240)
441 COG4128 Zot Zonula occludens t 89.3 0.86 1.9E-05 44.9 6.0 90 79-172 3-96 (398)
442 PF13481 AAA_25: AAA domain; P 89.3 0.75 1.6E-05 43.0 5.7 47 76-123 31-91 (193)
443 PRK14531 adenylate kinase; Pro 89.3 0.27 5.8E-06 45.9 2.6 19 78-96 3-21 (183)
444 TIGR01425 SRP54_euk signal rec 89.2 1.2 2.6E-05 47.2 7.6 53 77-129 100-159 (429)
445 cd00820 PEPCK_HprK Phosphoenol 89.2 0.56 1.2E-05 39.6 4.1 22 76-97 14-35 (107)
446 COG1120 FepC ABC-type cobalami 89.2 0.32 6.9E-06 47.8 3.1 26 76-101 27-54 (258)
447 TIGR00595 priA primosomal prot 89.1 1.4 3.1E-05 48.0 8.4 74 241-317 27-102 (505)
448 TIGR02236 recomb_radA DNA repa 89.1 0.48 1E-05 48.3 4.5 32 76-107 94-135 (310)
449 KOG0742 AAA+-type ATPase [Post 89.1 0.14 3E-06 52.6 0.5 69 78-170 385-456 (630)
450 TIGR00041 DTMP_kinase thymidyl 89.0 0.56 1.2E-05 44.0 4.6 19 76-94 2-20 (195)
451 PRK09354 recA recombinase A; P 88.9 0.71 1.5E-05 47.5 5.5 48 77-127 60-111 (349)
452 cd00071 GMPK Guanosine monopho 88.9 0.35 7.6E-06 42.8 2.9 17 80-96 2-18 (137)
453 PRK06731 flhF flagellar biosyn 88.8 1.1 2.5E-05 44.5 6.7 86 76-169 74-166 (270)
454 PRK14527 adenylate kinase; Pro 88.8 0.32 6.9E-06 45.7 2.7 21 76-96 5-25 (191)
455 PF10412 TrwB_AAD_bind: Type I 88.7 0.43 9.2E-06 50.3 3.9 45 74-118 12-60 (386)
456 CHL00176 ftsH cell division pr 88.7 2.5 5.3E-05 47.5 10.1 19 77-95 216-234 (638)
457 cd01122 GP4d_helicase GP4d_hel 88.7 1.1 2.5E-05 44.4 6.8 32 76-107 29-65 (271)
458 PF00154 RecA: recA bacterial 88.7 0.84 1.8E-05 46.4 5.8 77 77-169 53-143 (322)
459 PRK09825 idnK D-gluconate kina 88.7 0.34 7.3E-06 45.0 2.8 20 75-94 1-20 (176)
460 PRK14737 gmk guanylate kinase; 88.7 0.46 1E-05 44.5 3.7 23 76-98 3-25 (186)
461 TIGR03345 VI_ClpV1 type VI sec 88.6 0.65 1.4E-05 54.0 5.6 31 79-109 598-631 (852)
462 PRK05541 adenylylsulfate kinas 88.6 0.67 1.5E-05 42.8 4.8 19 76-94 6-24 (176)
463 COG1136 SalX ABC-type antimicr 88.6 0.3 6.6E-06 46.9 2.4 19 76-94 30-48 (226)
464 COG0630 VirB11 Type IV secreto 88.6 0.36 7.9E-06 49.1 3.2 50 61-110 127-179 (312)
465 PRK05580 primosome assembly pr 88.5 1.7 3.7E-05 49.3 8.8 74 241-317 192-267 (679)
466 KOG2228 Origin recognition com 88.4 1.8 3.9E-05 43.8 7.7 25 75-99 47-71 (408)
467 PRK06762 hypothetical protein; 88.4 0.78 1.7E-05 41.8 5.0 19 78-96 3-21 (166)
468 PLN02840 tRNA dimethylallyltra 88.4 0.42 9.1E-06 50.3 3.5 22 75-96 19-40 (421)
469 PRK11034 clpA ATP-dependent Cl 88.3 0.47 1E-05 54.1 4.2 17 78-94 489-505 (758)
470 TIGR02785 addA_Gpos recombinat 88.3 0.69 1.5E-05 56.1 5.7 58 62-123 2-67 (1232)
471 TIGR00174 miaA tRNA isopenteny 88.1 0.49 1.1E-05 47.4 3.7 22 79-100 1-22 (287)
472 PLN02748 tRNA dimethylallyltra 88.1 0.55 1.2E-05 50.3 4.3 22 75-96 20-41 (468)
473 TIGR01313 therm_gnt_kin carboh 88.1 0.5 1.1E-05 43.0 3.5 16 80-95 1-16 (163)
474 PF09439 SRPRB: Signal recogni 88.1 0.49 1.1E-05 44.0 3.4 25 76-100 2-26 (181)
475 PRK00698 tmk thymidylate kinas 88.0 0.62 1.3E-05 44.0 4.2 19 76-94 2-20 (205)
476 PF01583 APS_kinase: Adenylyls 88.0 0.81 1.8E-05 41.4 4.6 42 77-138 2-43 (156)
477 PRK11034 clpA ATP-dependent Cl 87.9 2.2 4.7E-05 48.9 9.1 20 75-94 205-224 (758)
478 PRK14532 adenylate kinase; Pro 87.9 0.62 1.3E-05 43.5 4.1 30 79-109 2-31 (188)
479 TIGR01360 aden_kin_iso1 adenyl 87.8 0.39 8.5E-06 44.7 2.7 20 77-96 3-22 (188)
480 PRK04301 radA DNA repair and r 87.6 0.65 1.4E-05 47.5 4.3 32 76-107 101-142 (317)
481 cd02019 NK Nucleoside/nucleoti 87.6 0.41 8.9E-06 36.8 2.2 15 80-94 2-16 (69)
482 PF07724 AAA_2: AAA domain (Cd 87.6 0.81 1.7E-05 42.2 4.5 17 78-94 4-20 (171)
483 cd01918 HprK_C HprK/P, the bif 87.5 0.64 1.4E-05 41.7 3.7 26 75-100 12-37 (149)
484 PHA00012 I assembly protein 87.4 2.4 5.2E-05 42.9 7.9 29 79-107 3-34 (361)
485 TIGR03743 SXT_TraD conjugative 87.4 1.3 2.8E-05 49.7 6.8 52 76-127 175-232 (634)
486 TIGR02881 spore_V_K stage V sp 87.4 0.37 8.1E-06 47.8 2.4 18 77-94 42-59 (261)
487 PF01935 DUF87: Domain of unkn 87.4 0.67 1.5E-05 44.8 4.1 18 77-94 23-40 (229)
488 PTZ00301 uridine kinase; Provi 87.4 0.43 9.3E-06 45.6 2.7 18 77-94 3-20 (210)
489 TIGR01359 UMP_CMP_kin_fam UMP- 87.4 0.62 1.3E-05 43.2 3.7 18 79-96 1-18 (183)
490 PRK10787 DNA-binding ATP-depen 87.3 1.2 2.6E-05 51.2 6.7 19 76-94 348-366 (784)
491 COG0324 MiaA tRNA delta(2)-iso 87.2 0.69 1.5E-05 46.6 4.1 22 77-98 3-24 (308)
492 PRK08356 hypothetical protein; 87.2 0.44 9.6E-06 44.9 2.7 19 77-95 5-23 (195)
493 PF02456 Adeno_IVa2: Adenoviru 87.1 0.68 1.5E-05 46.1 3.9 35 77-112 87-128 (369)
494 COG1066 Sms Predicted ATP-depe 87.0 1.5 3.3E-05 45.5 6.4 82 76-172 92-183 (456)
495 PRK04841 transcriptional regul 87.0 1 2.2E-05 53.0 6.1 32 76-107 31-62 (903)
496 cd01123 Rad51_DMC1_radA Rad51_ 86.9 0.82 1.8E-05 44.3 4.5 24 76-99 18-41 (235)
497 PRK06217 hypothetical protein; 86.9 0.44 9.5E-06 44.4 2.4 16 79-94 3-18 (183)
498 TIGR02640 gas_vesic_GvpN gas v 86.9 0.71 1.5E-05 45.8 4.0 21 76-96 20-40 (262)
499 PF00625 Guanylate_kin: Guanyl 86.8 0.68 1.5E-05 43.1 3.7 25 76-100 1-25 (183)
500 PF10662 PduV-EutP: Ethanolami 86.8 0.48 1E-05 42.2 2.4 17 78-94 2-18 (143)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.1e-91 Score=704.14 Aligned_cols=490 Identities=48% Similarity=0.807 Sum_probs=474.5
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccc
Q 008489 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (564)
Q Consensus 58 ~~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~ 137 (564)
.+.|++.|..|||.+|++++++++++|||+||||+-|++.+.+.++++|+.|+|.||.++++++++.|++|.++||++++
T Consensus 172 ~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~ 251 (700)
T KOG0953|consen 172 KISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERR 251 (700)
T ss_pred hhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceee
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC----CceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHcCCce
Q 008489 138 EVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (564)
Q Consensus 138 ~~~~----~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~ 213 (564)
.... +.++.||+||.+....|++.||||+|++.|++|||+||++|||+.++++|+||.++.+++++++++.+|+++
T Consensus 252 ~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~v 331 (700)
T KOG0953|consen 252 FVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDV 331 (700)
T ss_pred ecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCee
Confidence 8765 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCCCCCCCccccccccccCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee
Q 008489 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (564)
Q Consensus 214 ~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ 293 (564)
++..|+|..|+...+..+..+.++.+|||||+||++++..++..+++.+..+++++||+|||+.|.+|...|++++++.+
T Consensus 332 ev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d 411 (700)
T KOG0953|consen 332 EVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD 411 (700)
T ss_pred EEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc
Confidence 99999999999999988899999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChh
Q 008489 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM 373 (564)
Q Consensus 294 VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~e 373 (564)
|+||||++|||+|+.|++|||++..||+|.++.+++.++.+|++|||||+|.++..|.++++..+|+..+++.++.+..+
T Consensus 412 vlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 412 VLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEP 491 (700)
T ss_pred eEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCH
Q 008489 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453 (564)
Q Consensus 374 i~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~ 453 (564)
|..++++|+.+++..|+...|+..+..+++.|......+..|++|..++...++.++++.+|+..+|+.||.||++..+|
T Consensus 492 i~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p 571 (700)
T KOG0953|consen 492 IKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMP 571 (700)
T ss_pred HHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccchhhhc--cCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHH
Q 008489 454 ISSQGLTQFATNYSKKGIVQLREIF--TPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSM 531 (564)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~le~~~~~~~~y~wl~~r~~~~f~~~~~~~~~~~~~~~ 531 (564)
....+++.+|+.|+.++++++..+- ..+|...|++..+|..||+.|+++++|+|||+|||++|||.+.|+++++.+++
T Consensus 572 ~v~~~f~kfa~~~s~~~~l~~~~l~~~~~~p~~~p~t~~~L~~LEs~h~il~lYmWlS~Rfpd~fpd~~~vrd~~~~ld~ 651 (700)
T KOG0953|consen 572 RVCSAFLKFARQYSQNEPLTFLWLKFNLGWPNKIPKTIYELEDLESLHDILDLYMWLSNRFPDMFPDAESVRDLKKELDE 651 (700)
T ss_pred hHHHHHHHHHHHHhcCCcccHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhhhhhccChHHHHHHHHHHHH
Confidence 9999999999999999999975432 35777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccc
Q 008489 532 LIEEFLERLGWQKPRV 547 (564)
Q Consensus 532 ~i~~~l~~~~~~~~~~ 547 (564)
+|.+.+.++++...+-
T Consensus 652 ii~egv~~~~k~~~~~ 667 (700)
T KOG0953|consen 652 IIQEGVSKLTKLLKAH 667 (700)
T ss_pred HHHHHHHHHHhhhhcC
Confidence 9999999998876543
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-58 Score=479.66 Aligned_cols=432 Identities=20% Similarity=0.250 Sum_probs=354.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHH-hcCCeeEEEeCccccc----cCCCceE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREE----VDGAKHR 145 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~-----~~li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~----~~~~~~i 145 (564)
++++++|+|+|||||||+++|+|.++| ++.+.+|+|.+|..+++|++ ++|...|-.+|+..++ ...+.+.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Trik 144 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIK 144 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEE
Confidence 589999999999999999999998764 45677999999999999999 4566555555655544 3478899
Q ss_pred EEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCcc------ceEEEccCCCch--HHHHHHH---
Q 008489 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVP--LIQQILQ--- 207 (564)
Q Consensus 146 ~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~------~~~l~~~~~~~~--~~~~l~~--- 207 (564)
++|..++ +.|++|++|||||||+++.. +|+|+|+.++ .++++-++++++ .+.+++.
T Consensus 145 ymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~------TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~ 218 (674)
T KOG0922|consen 145 YMTDGMLLREILKDPLLSKYSVIILDEAHERSLH------TDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAP 218 (674)
T ss_pred EecchHHHHHHhcCCccccccEEEEechhhhhhH------HHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCc
Confidence 9998654 46899999999999999877 9999998864 456777777774 4444443
Q ss_pred ---HcCCceEEEeecccCCCCCC-Cccc----cccccccCCCeEEEc-cHHHHHHHHHHHHHcCC-------CeEEEEcC
Q 008489 208 ---VTGDDVKVQSYERLSPLVPL-NVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYG 271 (564)
Q Consensus 208 ---~~g~~~~v~~~~~~~~~~~~-~~~l----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~lhg 271 (564)
..|+.++|..++...|.... ...+ ......++||++||+ ++++++.+++.|.+... ..+.++||
T Consensus 219 i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 219 ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 46888999888776665443 2223 223346899999999 69999999999977521 13689999
Q ss_pred CCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccC
Q 008489 272 SLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRA 340 (564)
Q Consensus 272 ~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRa 340 (564)
+||.+ +|.+.|.. |+|.+||++|||++|++++|| |.+||+.+..| |++. ...|+|.+++.||+|||
T Consensus 299 aL~~e---~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRA 375 (674)
T KOG0922|consen 299 ALPSE---EQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRA 375 (674)
T ss_pred cCCHH---HhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccC
Confidence 99999 78888988 559999999999999999997 99999988765 6664 47899999999999999
Q ss_pred CCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCH
Q 008489 341 GRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC 420 (564)
Q Consensus 341 GR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~ 420 (564)
||.|+ |.||++|+++ .+.+|...+.|||+|.++...+++|++ .++.++++ |+|+++|++.....++
T Consensus 376 GRt~p----GkcyRLYte~--~~~~~~~~~~PEI~R~~Ls~~vL~Lka-------lgi~d~l~-F~f~d~P~~~~l~~AL 441 (674)
T KOG0922|consen 376 GRTGP----GKCYRLYTES--AYDKMPLQTVPEIQRVNLSSAVLQLKA-------LGINDPLR-FPFIDPPPPEALEEAL 441 (674)
T ss_pred CCCCC----ceEEEeeeHH--HHhhcccCCCCceeeechHHHHHHHHh-------cCCCCccc-CCCCCCCChHHHHHHH
Confidence 99999 9999999987 679999999999999999999999999 77778887 9999999999999999
Q ss_pred HHHHHHHHHhccCCCCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhcc-CCCCCCCCcHHHH------
Q 008489 421 EEVLKVATVIDQLPLRL-HEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT-PGTLQVPKTQAAL------ 492 (564)
Q Consensus 421 ~~l~~l~~~~~~~~lt~-~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l------ 492 (564)
++|+.++++++++.+|. .|+.+..+ | .+|.++++++...+.+|..+++++++++. .+.|..|.+...-
T Consensus 442 ~~L~~lgald~~g~lt~p~G~~ma~~-P---l~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~ 517 (674)
T KOG0922|consen 442 EELYSLGALDDRGKLTSPLGRQMAEL-P---LEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKR 517 (674)
T ss_pred HHHHhcCcccCcCCcCchHHhhhhhc-C---CCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHH
Confidence 99999999999999888 99998888 9 79999999999999999999999998884 4556555543222
Q ss_pred ---HHHHHHH-HHHHHH----------HHhhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 008489 493 ---RELESIH-KVLDLY----------VWLSFRLEESFPDRELAASQKAICSMLIEE 535 (564)
Q Consensus 493 ---~~le~~~-~~~~~y----------~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~ 535 (564)
..-|..| ..+.+| .||..+| ..+..+..|.++|+++.+++.+
T Consensus 518 ~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~-i~~r~l~~a~~ir~QL~~i~~~ 573 (674)
T KOG0922|consen 518 AKFANPEGDHLTLLNVYESWKENGTSKKWCKENF-INARSLKRAKDIRKQLRRILDK 573 (674)
T ss_pred HhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 1123333 455666 5777777 5677788899999999988843
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-57 Score=461.85 Aligned_cols=440 Identities=20% Similarity=0.246 Sum_probs=353.2
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHcCC---CE--EEEccHHHHHHHHHHHHH-hcCCeeEEEeCcccccc--
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS---SG--IYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEV-- 139 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~~---~~--li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~-- 139 (564)
.+..++ .|++++|+|+|||||||+.+|+|++.| ++ -+.+|+|.+|..++++++ ++|...+.-+|+..++.
T Consensus 364 ll~~ir--~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdv 441 (1042)
T KOG0924|consen 364 LLSVIR--ENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDV 441 (1042)
T ss_pred HHHHHh--hCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeec
Confidence 444553 499999999999999999999999875 22 344999999999999999 56666666566655543
Q ss_pred --CCCceEEEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCc------cceEEEccCCCch--HH
Q 008489 140 --DGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAVP--LI 202 (564)
Q Consensus 140 --~~~~~i~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~------~~~~l~~~~~~~~--~~ 202 (564)
+++.|-++|..++ ..|.+|++||+||||+++.+ +++++|+.+ ..++++..+++.+ .+
T Consensus 442 T~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN------tDilfGllk~~larRrdlKliVtSATm~a~kf 515 (1042)
T KOG0924|consen 442 TSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN------TDILFGLLKKVLARRRDLKLIVTSATMDAQKF 515 (1042)
T ss_pred CCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc------hHHHHHHHHHHHHhhccceEEEeeccccHHHH
Confidence 4667778887654 35799999999999999988 999999875 3566766666664 23
Q ss_pred HHHHH------HcCCceEEEeecccCCCCCC-----CccccccccccCCCeEEEc-cHHHHHHHHHHHHHc-------C-
Q 008489 203 QQILQ------VTGDDVKVQSYERLSPLVPL-----NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-------G- 262 (564)
Q Consensus 203 ~~l~~------~~g~~~~v~~~~~~~~~~~~-----~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~-------~- 262 (564)
..++. ..|++|+|...+...|.+.. ...+.....-.+|+++||. ++++++..+..+... +
T Consensus 516 ~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~ 595 (1042)
T KOG0924|consen 516 SNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPT 595 (1042)
T ss_pred HHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCC
Confidence 33332 45778888887777776554 2222333444789999999 577777666655432 2
Q ss_pred -CCeEEEEcCCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCH
Q 008489 263 -KHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTV 330 (564)
Q Consensus 263 -~~~v~~lhg~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~ 330 (564)
...|.++|+.||.+ .|.+.|.. +.|.+|||||||++|++++|| |.+||+.+..| |++. ...|+|.
T Consensus 596 ~~L~vlpiYSQLp~d---lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 596 TDLAVLPIYSQLPAD---LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CceEEEeehhhCchh---hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 45799999999999 78888885 668999999999999999997 99999888665 5543 5899999
Q ss_pred hhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcc
Q 008489 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410 (564)
Q Consensus 331 ~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~ 410 (564)
+++.||+|||||+|+ |.||++|+++ .+..+|+..+.|||+|.++..++++|++ .++.++++ |+|+++
T Consensus 673 AnA~QRaGRAGRt~p----G~cYRlYTe~-ay~~eml~stvPEIqRTNl~nvVLlLks-------lgV~dll~-FdFmD~ 739 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTGP----GTCYRLYTED-AYKNEMLPSTVPEIQRTNLSNVVLLLKS-------LGVDDLLK-FDFMDP 739 (1042)
T ss_pred ccchhhccccCCCCC----cceeeehhhh-HHHhhcccCCCchhhhcchhhHHHHHHh-------cChhhhhC-CCcCCC
Confidence 999999999999999 9999999986 4677899999999999999999999999 89999998 999999
Q ss_pred cCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhcc-CCCCCCCCcH
Q 008489 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT-PGTLQVPKTQ 489 (564)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 489 (564)
|+.+.++.++-+|..||+++..+.||+.|+.|..+ | .||.+++||+.++..+|.+++++|..||. +..|..|+..
T Consensus 740 Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~Mvef-p---LDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker 815 (1042)
T KOG0924|consen 740 PPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEF-P---LDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKER 815 (1042)
T ss_pred CHHHHHHHHHHHHHHhhccccCCccchhhHHhhhC-C---CCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccc
Confidence 99999999999999999999999999999999999 9 79999999999999999999999999984 5566666553
Q ss_pred HH--------HHHHHHHH-HHHHHHH-HhhhhcCCCCCC--------HHHHHHHHHHHHHHHHH
Q 008489 490 AA--------LRELESIH-KVLDLYV-WLSFRLEESFPD--------RELAASQKAICSMLIEE 535 (564)
Q Consensus 490 ~~--------l~~le~~~-~~~~~y~-wl~~r~~~~f~~--------~~~~~~~~~~~~~~i~~ 535 (564)
+. +..-|+.| ..++.|. |..+.|+..||. ...|+++|.++-+++++
T Consensus 816 ~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~ 879 (1042)
T KOG0924|consen 816 EEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQ 879 (1042)
T ss_pred hhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33 44445666 6788884 888888777665 34567777777666654
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-56 Score=460.15 Aligned_cols=440 Identities=19% Similarity=0.236 Sum_probs=347.8
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHcCC-----C-EEEEccHHHHHHHHHHHHH-hcCCeeEEEeCcccccc-
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS-----S-GIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEV- 139 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~~-----~-~li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~- 139 (564)
.+..+ ..+++++|.|+||||||||.||+|.++| + +-+.+|+|..|..++.|++ ++|++.|--+|+..++.
T Consensus 273 ll~av--~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEd 350 (902)
T KOG0923|consen 273 LLKAV--KEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFED 350 (902)
T ss_pred HHHHH--HhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEecc
Confidence 44444 3599999999999999999999999875 3 4455999999999999998 56766666666655544
Q ss_pred ---CCCceEEEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCcc------ceEEEccCCCch--H
Q 008489 140 ---DGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVP--L 201 (564)
Q Consensus 140 ---~~~~~i~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~------~~~l~~~~~~~~--~ 201 (564)
+.+.+-++|..|+ +.|..|++|||||||++... +++|+|+.+. .+.++-++++.+ .
T Consensus 351 cTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~------TDILfgLvKDIar~RpdLKllIsSAT~DAek 424 (902)
T KOG0923|consen 351 CTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLH------TDILFGLVKDIARFRPDLKLLISSATMDAEK 424 (902)
T ss_pred ccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhh------hhHHHHHHHHHHhhCCcceEEeeccccCHHH
Confidence 4566778888776 35799999999999999877 9999998753 456666666664 2
Q ss_pred HHHHH------HHcCCceEEEeecccCCCCCCC-cccccc----ccccCCCeEEEc-cHHHHHHHHHHHHHc----CC--
Q 008489 202 IQQIL------QVTGDDVKVQSYERLSPLVPLN-VPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIESR----GK-- 263 (564)
Q Consensus 202 ~~~l~------~~~g~~~~v~~~~~~~~~~~~~-~~l~~l----~~~~~g~~iv~~-s~~~~~~l~~~L~~~----~~-- 263 (564)
+..++ ..+|+.|+|..++...|..... ..+..+ ...+.||++||+ ++++++...+.|.+. |.
T Consensus 425 FS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski 504 (902)
T KOG0923|consen 425 FSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKI 504 (902)
T ss_pred HHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhcccc
Confidence 33333 3578899999998888865542 222222 334679999999 588888877777543 22
Q ss_pred --CeEEEEcCCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCH
Q 008489 264 --HLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTV 330 (564)
Q Consensus 264 --~~v~~lhg~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~ 330 (564)
.-++++|+.||.+ .|.+.|.. |+|.+||++|||++|++++|+ |.+||+.+..| |+++ ...|+|+
T Consensus 505 ~eliv~PiYaNLPse---lQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 505 RELIVLPIYANLPSE---LQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred ceEEEeeccccCChH---HHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeech
Confidence 2489999999999 78888888 789999999999999999997 99999888766 6655 3789999
Q ss_pred hhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcc
Q 008489 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410 (564)
Q Consensus 331 ~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~ 410 (564)
+++.||+|||||+|+ |.||++|+.. .+...+-..+.|||+|.+|..+++.|++ .++.++++ |+|+++
T Consensus 582 AsA~QRaGRAGRtgP----GKCfRLYt~~-aY~~eLE~~t~PEIqRtnL~nvVL~LkS-------LGI~Dl~~-FdFmDp 648 (902)
T KOG0923|consen 582 ASANQRAGRAGRTGP----GKCFRLYTAW-AYEHELEEMTVPEIQRTNLGNVVLLLKS-------LGIHDLIH-FDFLDP 648 (902)
T ss_pred hhhhhhccccCCCCC----CceEEeechh-hhhhhhccCCCcceeeccchhHHHHHHh-------cCcchhcc-cccCCC
Confidence 999999999999999 9999999865 3445566677799999999999999999 99999998 999999
Q ss_pred cCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhcc--CCCCCCCCc
Q 008489 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT--PGTLQVPKT 488 (564)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~ 488 (564)
|+.+.+..+++.|+.||++...+.||..|+.|..+ | .||++++|++......|..++++|++|+. +.+|..|.+
T Consensus 649 Pp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEf-P---~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~ 724 (902)
T KOG0923|consen 649 PPTETLLKALEQLYALGALNHLGELTKLGRRMAEF-P---VDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKD 724 (902)
T ss_pred CChHHHHHHHHHHHHhhccccccchhhhhhhhhhc-C---CCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchh
Confidence 99999999999999999999999999999999999 9 79999999999999999999999999984 445555554
Q ss_pred HHH--------HHHHHHHH-HHHHHH----------HHhhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 008489 489 QAA--------LRELESIH-KVLDLY----------VWLSFRLEESFPDRELAASQKAICSMLIEEF 536 (564)
Q Consensus 489 ~~~--------l~~le~~~-~~~~~y----------~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~~ 536 (564)
+.. +..-...| ..++.| .||...| -.|..+..|.++|.++..++++.
T Consensus 725 ~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~-iq~~sm~rardir~qL~gll~~v 790 (902)
T KOG0923|consen 725 KQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENF-IQYRSMKRARDIRDQLEGLLERV 790 (902)
T ss_pred hhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhh-hhHHHHHHHHHHHHHHHHHhhhc
Confidence 211 11112222 233444 5666555 44666777888888887776654
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-53 Score=424.95 Aligned_cols=430 Identities=18% Similarity=0.224 Sum_probs=343.9
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcC----CC-EEEEccHHHHHHHHHHHHH-hcCCeeEEEeCccccccC----CCce
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLESS----SS-GIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEVD----GAKH 144 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~~----~~-~li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~----~~~~ 144 (564)
.+|+.++++|+||||||++++|+..+. .+ +.+.+|+|..|.+++.|++ ++++..|--+|+..++.+ ++-.
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L 139 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL 139 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH
Confidence 469999999999999999999887643 34 4555999999999999999 556666555565555433 3344
Q ss_pred EEEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCc------cceEEEccCCCch--HHHHHH---
Q 008489 145 RAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAVP--LIQQIL--- 206 (564)
Q Consensus 145 i~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~------~~~~l~~~~~~~~--~~~~l~--- 206 (564)
.+||..|+ +.+..|++||+||||+++.. +++|+|+.+ ..++++-++++.. .++.+.
T Consensus 140 ky~tDgmLlrEams~p~l~~y~viiLDeahERtlA------TDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~ 213 (699)
T KOG0925|consen 140 KYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA------TDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNA 213 (699)
T ss_pred HHhcchHHHHHHhhCcccccccEEEechhhhhhHH------HHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCC
Confidence 57787664 45899999999999999876 999999775 3556666665553 333333
Q ss_pred ---HHcCCceEEEeecccCCCCCC-Cccccc----cccccCCCeEEEc-cHHHHHHHHHHHHHc--------CCCeEEEE
Q 008489 207 ---QVTGDDVKVQSYERLSPLVPL-NVPLGS----FSNIQTGDCIVTF-SRHAIYRLKKAIESR--------GKHLCSIV 269 (564)
Q Consensus 207 ---~~~g~~~~v~~~~~~~~~~~~-~~~l~~----l~~~~~g~~iv~~-s~~~~~~l~~~L~~~--------~~~~v~~l 269 (564)
...| ++++..++...+..+. +..+.. .....+||+++|+ +.++++..++.+... |..+|.++
T Consensus 214 Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PL 292 (699)
T KOG0925|consen 214 PLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPL 292 (699)
T ss_pred CeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEec
Confidence 2344 6777777766665443 223322 2334699999999 689999998888642 45679999
Q ss_pred cCCCCHHHHHHHHHHHhC------CCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhH
Q 008489 270 YGSLPPETRTRQATRFND------ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEV 333 (564)
Q Consensus 270 hg~l~~~~R~~~~~~F~~------~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~ 333 (564)
| |. ++.+.|+. +.-.+||+|+|++++++++++ |.+||+.+..+ |+++ -.+|+|++++
T Consensus 293 y----P~---~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA 365 (699)
T KOG0925|consen 293 Y----PA---QQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASA 365 (699)
T ss_pred C----ch---hhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHH
Confidence 9 43 34455654 223579999999999999997 99999887665 7776 4789999999
Q ss_pred HhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCC
Q 008489 334 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413 (564)
Q Consensus 334 ~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~ 413 (564)
.||+|||||+.+ |.|+++|+++. .-.++...+.|||.+++|.+++++||. .++.++.. |+++++|.+
T Consensus 366 ~qR~gragrt~p----GkcfrLYte~~-~~~em~~~typeilrsNL~s~VL~LKk-------lgI~dlvh-fdfmDpPAP 432 (699)
T KOG0925|consen 366 QQRAGRAGRTRP----GKCFRLYTEEA-FEKEMQPQTYPEILRSNLSSTVLQLKK-------LGIDDLVH-FDFMDPPAP 432 (699)
T ss_pred HHHhhhccCCCC----CceEEeecHHh-hhhcCCCCCcHHHHHHhhHHHHHHHHh-------cCcccccC-CcCCCCCCh
Confidence 999999999999 99999999873 334588899999999999999999999 77888776 999999999
Q ss_pred CccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhcc-CCCCCCCCcH---
Q 008489 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT-PGTLQVPKTQ--- 489 (564)
Q Consensus 414 ~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~--- 489 (564)
+.++.++++|..+++++++++||..|..+..+ | .||.+++||+.++++.|.+++++|.+|+. ++.|..|...
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEF-P---LdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~k 508 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEF-P---LDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASK 508 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcC-C---CChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHH
Confidence 99999999999999999999999999999999 9 79999999999999999999999999994 5678777632
Q ss_pred ------HHHHHHHHHH-HHHHHH----------HHhhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 008489 490 ------AALRELESIH-KVLDLY----------VWLSFRLEESFPDRELAASQKAICSMLIEEF 536 (564)
Q Consensus 490 ------~~l~~le~~~-~~~~~y----------~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~~ 536 (564)
..+.+.+..| ..++.| .||..+| .+|.....|..+|+++.++|++.
T Consensus 509 aAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~f-lN~ral~~Ad~vR~qL~rim~R~ 571 (699)
T KOG0925|consen 509 AADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNF-LNYRALKSADNVRQQLLRIMDRF 571 (699)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhc-ccHHHHHhHHHHHHHHHHHHHHh
Confidence 3344445566 566777 8999999 88999999999999999999875
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-52 Score=456.18 Aligned_cols=380 Identities=20% Similarity=0.166 Sum_probs=317.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHH-hcCCeeEEEeCccccc----cCCCceE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREE----VDGAKHR 145 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~-----~~li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~----~~~~~~i 145 (564)
++++++|+|||||||||+.++.+++.+ .+.+++|+|..|..+++|++ ++|.+++-.+|+..+. ..++.+.
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik 143 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIK 143 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeE
Confidence 589999999999999999999999875 44666999999999999999 4677666666665544 4578899
Q ss_pred EEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCcc-------ceEEEccCCCch--HHHHHHH--
Q 008489 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-------ELHLCGDPAAVP--LIQQILQ-- 207 (564)
Q Consensus 146 ~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~-------~~~l~~~~~~~~--~~~~l~~-- 207 (564)
++|..++ ..|++|++|||||+||++.+ +|+++|+.+. .++++-++++++ .+..++.
T Consensus 144 ~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~------tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~a 217 (845)
T COG1643 144 VMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN------TDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217 (845)
T ss_pred EeccHHHHHHHhhCcccccCCEEEEcchhhhhHH------HHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCC
Confidence 9998654 35899999999999999877 8999887653 578888888874 3333333
Q ss_pred ----HcCCceEEEeecccCCCCCC--Cc----cccccccccCCCeEEEc-cHHHHHHHHHHHHH--c-CCCeEEEEcCCC
Q 008489 208 ----VTGDDVKVQSYERLSPLVPL--NV----PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIES--R-GKHLCSIVYGSL 273 (564)
Q Consensus 208 ----~~g~~~~v~~~~~~~~~~~~--~~----~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~--~-~~~~v~~lhg~l 273 (564)
..|+.|+|..++...+.... .. .+.......+|+++||+ ++++++.+++.|++ . ....++++||.|
T Consensus 218 pvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L 297 (845)
T COG1643 218 PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGAL 297 (845)
T ss_pred CEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccC
Confidence 46788999988755543222 11 12333445799999999 69999999999987 3 235799999999
Q ss_pred CHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCC
Q 008489 274 PPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGR 342 (564)
Q Consensus 274 ~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR 342 (564)
|.+ +|.+.|+. +.|++|||+|||++|+||||| |++||+.+..| ||.. ...|+|.+++.||+|||||
T Consensus 298 ~~~---eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR 374 (845)
T COG1643 298 SAE---EQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR 374 (845)
T ss_pred CHH---HHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc
Confidence 999 67778887 445588999999999999996 99999988765 6654 4789999999999999999
Q ss_pred CCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHH-HHHHHHHHhcccCCCccccCHH
Q 008489 343 YGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY-GILEHFLENAKLSENYFFANCE 421 (564)
Q Consensus 343 ~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~-~~l~~f~~~~~~~~~~~~~~~~ 421 (564)
.++ |+||++|+++ .+..+.+.+.|||.++++...++++++ .++. ++.. |+|+++|+...+..+.+
T Consensus 375 ~~p----GicyRLyse~--~~~~~~~~t~PEIlrtdLs~~vL~l~~-------~G~~~d~~~-f~fld~P~~~~i~~A~~ 440 (845)
T COG1643 375 TGP----GICYRLYSEE--DFLAFPEFTLPEILRTDLSGLVLQLKS-------LGIGQDIAP-FPFLDPPPEAAIQAALT 440 (845)
T ss_pred CCC----ceEEEecCHH--HHHhcccCCChhhhhcchHHHHHHHHh-------cCCCCCccc-CccCCCCChHHHHHHHH
Confidence 999 9999999986 566999999999999999999999999 4553 5555 99999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhccCCC
Q 008489 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGT 482 (564)
Q Consensus 422 ~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 482 (564)
.|..+|++++.+.||..|+.|..+ | .||++++||+.+...+|..+.++|++++....
T Consensus 441 ~L~~LGAld~~g~LT~lG~~ms~l-p---ldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~ 497 (845)
T COG1643 441 LLQELGALDDSGKLTPLGKQMSLL-P---LDPRLARMLLTAPEGGCLGEAATIASMLSEQD 497 (845)
T ss_pred HHHHcCCcCCCCCCCHHHHHHHhC-C---CChHHHHHHHhccccCcHHHHHHHHHhhccCC
Confidence 999999999999999999999999 9 79999999999999999999999999996555
No 7
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.7e-50 Score=445.81 Aligned_cols=386 Identities=17% Similarity=0.131 Sum_probs=302.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC----CCEEEEccHHHHHHHHHHHHH-hc----CCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESS----SSGIYCGPLRLLAWEVAKRLN-KA----NVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~----~~~li~~P~r~La~q~~~~l~-~~----g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
++++++++||||||||+++++.+++. +++++++|||++|.|++++++ .+ |..|++.++.+.....++.+++
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~v 95 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEV 95 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEEE
Confidence 57899999999999999999988753 578999999999999999997 34 4455555555544445788999
Q ss_pred Ecceec-------cccCcccEEEEcccccc-CCCCCcchHHHHHhccCccceEEEccCCCchH--HHHHHH------HcC
Q 008489 147 VTVEMA-------DVVSDYDCAVIDEIQML-GCKTRGFSFTRALLGICANELHLCGDPAAVPL--IQQILQ------VTG 210 (564)
Q Consensus 147 ~T~e~~-------~~l~~~~~vViDEaH~~-~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~--~~~l~~------~~g 210 (564)
+|+..+ ..+.++++|||||+|++ .+.+.+..+..-+........+++.++++.+. +..++. ..|
T Consensus 96 ~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~g 175 (819)
T TIGR01970 96 VTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEG 175 (819)
T ss_pred ECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEecC
Confidence 999544 24789999999999986 33333444433333333455666666677653 233321 123
Q ss_pred CceEEEeecccCCCCCC-C----ccccccccccCCCeEEEc-cHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHHH
Q 008489 211 DDVKVQSYERLSPLVPL-N----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQA 282 (564)
Q Consensus 211 ~~~~v~~~~~~~~~~~~-~----~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~~ 282 (564)
+.+++..++...+.... . ..+..+.+...|+++||+ ++.+++.+++.|++. ....+.++||+|++++|..++
T Consensus 176 r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 176 RSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred cceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHH
Confidence 34455544433221111 0 111222233578999999 899999999999873 245799999999999999999
Q ss_pred HHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEEE
Q 008489 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (564)
Q Consensus 283 ~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~ 352 (564)
+.|.+ |+++||||||++|+||||| |++||+++..+ ||.. ...|+|.+++.||+|||||.++ |.|
T Consensus 256 ~~~~~--G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~----G~c 329 (819)
T TIGR01970 256 KPDPQ--GRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP----GVC 329 (819)
T ss_pred hhccc--CCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC----CEE
Confidence 99998 9999999999999999997 99999999875 6654 4688999999999999999976 999
Q ss_pred EEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhcc
Q 008489 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (564)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~ 432 (564)
|++++++ .+..+.....|||.+.++.+.+++++.++.. +.. .|.++++|+...+..+++.|..+++++++
T Consensus 330 yrL~t~~--~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~-------~~~-~~~~l~~P~~~~i~~a~~~L~~lgald~~ 399 (819)
T TIGR01970 330 YRLWSEE--QHQRLPAQDEPEILQADLSGLALELAQWGAK-------DPS-DLRWLDAPPSVALAAARQLLQRLGALDAQ 399 (819)
T ss_pred EEeCCHH--HHHhhhcCCCcceeccCcHHHHHHHHHcCCC-------Chh-hCCCCCCcCHHHHHHHHHHHHHCCCCCCC
Confidence 9999876 5677899999999999999999999996433 232 37899999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhccCC
Q 008489 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481 (564)
Q Consensus 433 ~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~ 481 (564)
+.+|..|+.+..+ | .||.++++++..+.+.|....++|++++...
T Consensus 400 ~~lT~~G~~~~~l-p---~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~ 444 (819)
T TIGR01970 400 GRLTAHGKAMAAL-G---CHPRLAAMLLSAHSTGLAALACDLAALLEER 444 (819)
T ss_pred CCcCHHHHHHHhc-C---CCHHHHHHHHHhhhcCCHHHHHHHHHHHcCC
Confidence 9999999999999 9 7999999999999999999999999999654
No 8
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.9e-48 Score=441.89 Aligned_cols=434 Identities=15% Similarity=0.120 Sum_probs=317.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHHh-cC----CeeEEEeCccccccCCCceE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-AN----VSCDLITGQEREEVDGAKHR 145 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~-----~~li~~P~r~La~q~~~~l~~-~g----~~~~~~~G~~~~~~~~~~~i 145 (564)
++++++++|+|||||||+.|+.+++.+ .+++++|+|..|.++++++++ ++ ..+|+.+..+.....++.++
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~I~ 167 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK 167 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCCEE
Confidence 588999999999999999999888643 344569999999999998883 34 44444333333334578899
Q ss_pred EEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCc--cceEEEccCCCchHHHHHHHHc-------
Q 008489 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQVT------- 209 (564)
Q Consensus 146 ~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~--~~~~l~~~~~~~~~~~~l~~~~------- 209 (564)
++|+.++ ..+.+|++|||||||+++.+ -++... .+..+.. ...+++..++|.+. ..+.+..
T Consensus 168 v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn-~DfLLg-~Lk~lL~~rpdlKvILmSATid~-e~fs~~F~~apvI~ 244 (1294)
T PRK11131 168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN-IDFILG-YLKELLPRRPDLKVIITSATIDP-ERFSRHFNNAPIIE 244 (1294)
T ss_pred EEChHHHHHHHhcCCccccCcEEEecCccccccc-cchHHH-HHHHhhhcCCCceEEEeeCCCCH-HHHHHHcCCCCEEE
Confidence 9999554 34799999999999986432 133221 1111211 24566666677652 3444433
Q ss_pred --CCceEEEeecccCCCCCC---Cccc-------cccccccCCCeEEEc-cHHHHHHHHHHHHHcCC--CeEEEEcCCCC
Q 008489 210 --GDDVKVQSYERLSPLVPL---NVPL-------GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLP 274 (564)
Q Consensus 210 --g~~~~v~~~~~~~~~~~~---~~~l-------~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l~ 274 (564)
|+.+++..++........ ...+ ..+....+|+++||+ ++.+++.+++.|++.+. ..+.++||+|+
T Consensus 245 V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls 324 (1294)
T PRK11131 245 VSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLS 324 (1294)
T ss_pred EcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCC
Confidence 334444444433221110 0111 112234578999999 79999999999988653 24789999999
Q ss_pred HHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCC
Q 008489 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYG 344 (564)
Q Consensus 275 ~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g 344 (564)
+++|..+++. .|.++||||||++|+||||| |++||+++..+ ||.. ...|+|.++|.||+|||||.+
T Consensus 325 ~~eQ~~Vf~~----~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~ 400 (1294)
T PRK11131 325 NSEQNRVFQS----HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS 400 (1294)
T ss_pred HHHHHHHhcc----cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC
Confidence 9977766543 37899999999999999997 99999998644 6654 356889999999999999997
Q ss_pred CCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHH
Q 008489 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVL 424 (564)
Q Consensus 345 ~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~ 424 (564)
+ |+||++++++ .+..+.+.+.|||.+.++...+++++. .++.++.. |.++++|+...+..+++.|.
T Consensus 401 ~----G~c~rLyte~--d~~~~~~~~~PEIlR~~L~~viL~lk~-------lgl~di~~-F~fldpP~~~~i~~al~~L~ 466 (1294)
T PRK11131 401 E----GICIRLYSED--DFLSRPEFTDPEILRTNLASVILQMTA-------LGLGDIAA-FPFVEAPDKRNIQDGVRLLE 466 (1294)
T ss_pred C----cEEEEeCCHH--HHHhhhcccCCccccCCHHHHHHHHHH-------cCCCCcce-eeCCCCCCHHHHHHHHHHHH
Confidence 6 9999999976 667788999999999999999999998 45555554 89999999999999999999
Q ss_pred HHHHHhcc-----CCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhc-cCCCCCCCCcHHHHHH----
Q 008489 425 KVATVIDQ-----LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF-TPGTLQVPKTQAALRE---- 494 (564)
Q Consensus 425 ~l~~~~~~-----~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~l~~---- 494 (564)
.+|+++++ +.+|..|+.+..+ | .||.++++|+.++.++|.+++++|++++ ..+||..|.+.....+
T Consensus 467 ~LgAld~~~~~~~~~LT~lG~~la~L-P---ldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~ 542 (1294)
T PRK11131 467 ELGAITTDEQASAYKLTPLGRQLAQL-P---VDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHR 542 (1294)
T ss_pred HCCCCCccccCCCccCcHHHHHHHhC-C---CChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHH
Confidence 99999854 4599999999999 9 7999999999999999999999999888 4567776654322111
Q ss_pred ----HHHHH-HHHHHH----------------HHhhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 008489 495 ----LESIH-KVLDLY----------------VWLSFRLEESFPDRELAASQKAICSMLIEE 535 (564)
Q Consensus 495 ----le~~~-~~~~~y----------------~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~ 535 (564)
-++.| ..+++| .||..+| ..|.-+..+.+++.++.+++.+
T Consensus 543 ~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~-L~~~~l~e~~~i~~QL~~~~~~ 603 (1294)
T PRK11131 543 RFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDY-LNYLRVREWQDIYTQLRQVVKE 603 (1294)
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 11111 133333 3666666 5666677788888888877654
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-48 Score=443.14 Aligned_cols=383 Identities=17% Similarity=0.142 Sum_probs=297.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHH-hcCCeeEEEeCccccc----cCCCceE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREE----VDGAKHR 145 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~-----~~li~~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~----~~~~~~i 145 (564)
++++++|+|+|||||||+.++.+++.+ ++++++|+|..|..++++++ ++|.+++..+|+..+. ..++.+.
T Consensus 81 ~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~ 160 (1283)
T TIGR01967 81 ENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVK 160 (1283)
T ss_pred hCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceee
Confidence 578999999999999999999998754 34556999999999999998 4677777777764333 3467899
Q ss_pred EEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccC------ccceEEEccCCCchHHHHHHHHc---
Q 008489 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVT--- 209 (564)
Q Consensus 146 ~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~------~~~~~l~~~~~~~~~~~~l~~~~--- 209 (564)
++|+.++ ..+.+|++|||||||+++-+ +++++++. ...++++.++++.+. ..+.+..
T Consensus 161 ~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~------~D~LL~lLk~il~~rpdLKlIlmSATld~-~~fa~~F~~a 233 (1283)
T TIGR01967 161 LMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN------IDFLLGYLKQLLPRRPDLKIIITSATIDP-ERFSRHFNNA 233 (1283)
T ss_pred eccccHHHHHhhhCcccccCcEEEEcCcchhhcc------chhHHHHHHHHHhhCCCCeEEEEeCCcCH-HHHHHHhcCC
Confidence 9999664 35789999999999986543 34433321 234566777777753 3444433
Q ss_pred ------CCceEEEeecccCCCCCCC---c-------cccccccccCCCeEEEc-cHHHHHHHHHHHHHcCC--CeEEEEc
Q 008489 210 ------GDDVKVQSYERLSPLVPLN---V-------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVY 270 (564)
Q Consensus 210 ------g~~~~v~~~~~~~~~~~~~---~-------~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lh 270 (564)
|..+++..++......... . .+..+....+|+++||+ ++.+++.+++.|++.+. ..+.++|
T Consensus 234 pvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLh 313 (1283)
T TIGR01967 234 PIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLY 313 (1283)
T ss_pred CEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 3344555444332111100 0 11112223579999999 79999999999987643 3589999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccC
Q 008489 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRA 340 (564)
Q Consensus 271 g~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRa 340 (564)
|+|++++|..+ |+.. +.++||||||++|+||||| |++||+++..+ ||+. ...|+|.++|.||+|||
T Consensus 314 g~Ls~~eQ~~v---f~~~-~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRA 389 (1283)
T TIGR01967 314 ARLSNKEQQRV---FQPH-SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRC 389 (1283)
T ss_pred CCCCHHHHHHH---hCCC-CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhh
Confidence 99999977665 6552 3579999999999999997 99999999765 6654 35788999999999999
Q ss_pred CCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCH
Q 008489 341 GRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC 420 (564)
Q Consensus 341 GR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~ 420 (564)
||.++ |+||++++++ .+..+...+.|||.+.+|.+.+++++.++ +.++.+ |.++++|+...+..++
T Consensus 390 GR~~~----G~cyRLyte~--~~~~~~~~~~PEIlR~~L~~viL~l~~lg-------~~di~~-f~fldpP~~~~i~~A~ 455 (1283)
T TIGR01967 390 GRVAP----GICIRLYSEE--DFNSRPEFTDPEILRTNLASVILQMLALR-------LGDIAA-FPFIEAPDPRAIRDGF 455 (1283)
T ss_pred CCCCC----ceEEEecCHH--HHHhhhhccCcccccccHHHHHHHHHhcC-------CCCccc-ccCCCCCCHHHHHHHH
Confidence 99997 9999999976 56678889999999999999999999843 334443 8899999999999999
Q ss_pred HHHHHHHHHhccC---CCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhc-cCCCCCCCC
Q 008489 421 EEVLKVATVIDQL---PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF-TPGTLQVPK 487 (564)
Q Consensus 421 ~~l~~l~~~~~~~---~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 487 (564)
+.|..+|++++++ .+|+.|+.+..+ | .||.+++||+.++...|..++++|++++ ..+|+..|.
T Consensus 456 ~~L~~LGAld~~~~~~~LT~lGr~ma~L-P---ldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~ 522 (1283)
T TIGR01967 456 RLLEELGALDDDEAEPQLTPIGRQLAQL-P---VDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPM 522 (1283)
T ss_pred HHHHHCCCCCCCCCCccccHHHHHHhhc-C---CChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcc
Confidence 9999999999887 699999999999 9 7999999999999999999999999888 455665544
No 10
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.2e-48 Score=435.11 Aligned_cols=386 Identities=17% Similarity=0.156 Sum_probs=296.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC----CCEEEEccHHHHHHHHHHHHHh-c----CCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESS----SSGIYCGPLRLLAWEVAKRLNK-A----NVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~----~~~li~~P~r~La~q~~~~l~~-~----g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
++++++++||||||||+++++.+++. +++++++|||++|.|+++++++ + |..+++.++.+.....++.+++
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~v 98 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEV 98 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEEE
Confidence 57899999999999999999888764 5789999999999999999973 3 5566666666655556788999
Q ss_pred Ecceec-------cccCcccEEEEccccccCCC-CCcchHHHHHhccCccceEEEccCCCchHHHHHHHHc---------
Q 008489 147 VTVEMA-------DVVSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT--------- 209 (564)
Q Consensus 147 ~T~e~~-------~~l~~~~~vViDEaH~~~~~-~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~--------- 209 (564)
+|+..+ ..+.++++|||||+|+++.. +-...+..-++......++++.+++|.+.- .+....
T Consensus 99 ~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~~~~~~~~~I~~~ 177 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQQLLPDAPVIVSE 177 (812)
T ss_pred EChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHHHhcCCCCEEEec
Confidence 999544 24689999999999997533 111222222222223456677777777532 233333
Q ss_pred CCceEEEeecccCCCCCCC-----ccccccccccCCCeEEEc-cHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHH
Q 008489 210 GDDVKVQSYERLSPLVPLN-----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQ 281 (564)
Q Consensus 210 g~~~~v~~~~~~~~~~~~~-----~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~ 281 (564)
|+.+++..++...+..... ..+..+.....|+++||+ ++++++.+++.|++. ....+.++||+|++++|...
T Consensus 178 gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~ 257 (812)
T PRK11664 178 GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKA 257 (812)
T ss_pred CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHH
Confidence 2333444333222211110 012222233578999999 899999999999862 23479999999999999999
Q ss_pred HHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEE
Q 008489 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (564)
Q Consensus 282 ~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~ 351 (564)
++.|.+ |+++||||||++|+||||| |++||+++..+ ||.. ...++|.+++.||+|||||.++ |.
T Consensus 258 ~~~~~~--G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~----G~ 331 (812)
T PRK11664 258 ILPAPA--GRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP----GI 331 (812)
T ss_pred hccccC--CCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC----cE
Confidence 999988 9999999999999999997 99999999875 7654 4678999999999999999976 99
Q ss_pred EEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhc
Q 008489 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 431 (564)
Q Consensus 352 ~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 431 (564)
||++++++ .+..+...+.|||.++++.+.++.++.|+.. +.. .|.++++|++..+..+++.|..+|++++
T Consensus 332 cyrL~t~~--~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~-------~~~-~~~~ld~P~~~~~~~A~~~L~~lgald~ 401 (812)
T PRK11664 332 CLHLYSKE--QAERAAAQSEPEILHSDLSGLLLELLQWGCH-------DPA-QLSWLDQPPAAALAAAKRLLQQLGALDG 401 (812)
T ss_pred EEEecCHH--HHhhCccCCCCceeccchHHHHHHHHHcCCC-------CHH-hCCCCCCCCHHHHHHHHHHHHHCCCCCC
Confidence 99999977 6677899999999999999999999985533 233 3889999999999999999999999999
Q ss_pred cCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhc--CccchhhhccCCC
Q 008489 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK--GIVQLREIFTPGT 482 (564)
Q Consensus 432 ~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~--~~~~i~~~~~~~~ 482 (564)
++.+|..|+.+..+ | .+|.++++|+..+.+.|.. ....+++++...+
T Consensus 402 ~g~lT~~G~~m~~l-p---~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~ 450 (812)
T PRK11664 402 QGRLTARGRKMAAL-G---NDPRLAAMLVAAKEDDEAALATAAKLAAILEEPP 450 (812)
T ss_pred CCCcCHHHHHHHhc-C---CchHHHHHHHHHHhcCchhhHHHHHHHHhhccCC
Confidence 99999999999999 9 7999999999988876442 3344566775543
No 11
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-47 Score=398.62 Aligned_cols=390 Identities=17% Similarity=0.181 Sum_probs=315.8
Q ss_pred CCCCCCccc---cchHHHh--------cCCceEEEEccCCccHHHHHHHHHHcCC--------CE--EEEccHHHHHHHH
Q 008489 59 FTDLTRPHT---WYPLARK--------KVRKVILHVGPTNSGKTHQALSRLESSS--------SG--IYCGPLRLLAWEV 117 (564)
Q Consensus 59 ~~~~~~~q~---~~p~~~~--------~~~~~viv~apTGsGKT~~~~~~l~~~~--------~~--li~~P~r~La~q~ 117 (564)
+..+..+|+ .+|.+-. ..|.+|||+|.||||||||.+|+|.++| .+ =|.+|+|.+|..+
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 445556665 4444321 3588999999999999999999999875 22 3569999999999
Q ss_pred HHHHH-hc---CCeeEEEeCccccccCCCceEEEcceec------c-ccCcccEEEEccccccCCCCCcchHHHHHhccC
Q 008489 118 AKRLN-KA---NVSCDLITGQEREEVDGAKHRAVTVEMA------D-VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186 (564)
Q Consensus 118 ~~~l~-~~---g~~~~~~~G~~~~~~~~~~~i~~T~e~~------~-~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~ 186 (564)
++|++ ++ |-.|++....+....+++.|.++|..++ | .|.+|++|||||||+++.+ +++|+|++
T Consensus 322 AkRVa~EL~~~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvn------TDILiGmL 395 (1172)
T KOG0926|consen 322 AKRVAFELGVLGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVN------TDILIGML 395 (1172)
T ss_pred HHHHHHHhccCccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccch------HHHHHHHH
Confidence 99998 44 5567776666666667899999998554 2 3699999999999999987 99999986
Q ss_pred cc----------------ceEEEccCCCch------------HHHHHHHHcCCceEEEe-ecccCCCCCCCcc----ccc
Q 008489 187 AN----------------ELHLCGDPAAVP------------LIQQILQVTGDDVKVQS-YERLSPLVPLNVP----LGS 233 (564)
Q Consensus 187 ~~----------------~~~l~~~~~~~~------------~~~~l~~~~g~~~~v~~-~~~~~~~~~~~~~----l~~ 233 (564)
.+ .++++-+++++. +...+++...+.|+|.. |.+.++..+...+ +..
T Consensus 396 SRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~I 475 (1172)
T KOG0926|consen 396 SRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKI 475 (1172)
T ss_pred HHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHH
Confidence 43 455666666552 12234455566777765 4555665554333 345
Q ss_pred cccccCCCeEEEc-cHHHHHHHHHHHHHc---------------------------------------------------
Q 008489 234 FSNIQTGDCIVTF-SRHAIYRLKKAIESR--------------------------------------------------- 261 (564)
Q Consensus 234 l~~~~~g~~iv~~-s~~~~~~l~~~L~~~--------------------------------------------------- 261 (564)
...+++|.++||. +++++..+++.|++.
T Consensus 476 H~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~ 555 (1172)
T KOG0926|consen 476 HKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQE 555 (1172)
T ss_pred hhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhh
Confidence 5678999999999 599999999988763
Q ss_pred -----------------------------------------------CCCeEEEEcCCCCHHHHHHHHHHHhC-CCCCee
Q 008489 262 -----------------------------------------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFD 293 (564)
Q Consensus 262 -----------------------------------------------~~~~v~~lhg~l~~~~R~~~~~~F~~-~~g~~~ 293 (564)
+...|.++|+-|+.+ +|.+.|.. |.|.+-
T Consensus 556 ~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~---~Q~RVF~~~p~g~RL 632 (1172)
T KOG0926|consen 556 LVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTE---KQMRVFDEVPKGERL 632 (1172)
T ss_pred hhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHH---HhhhhccCCCCCceE
Confidence 123488999999999 78888887 779999
Q ss_pred EEEeccccccccccC-ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH
Q 008489 294 VLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363 (564)
Q Consensus 294 VlVaT~~~~~Gldip-v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~ 363 (564)
++||||++|++++|| |+|||+++..| ||.. ...|+|.++.-||+|||||.|+ |+||+||+.. .|
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp----GHcYRLYSSA--Vf 706 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP----GHCYRLYSSA--VF 706 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC----CceeehhhhH--Hh
Confidence 999999999999998 99999998765 6654 5789999999999999999999 9999999976 44
Q ss_pred H-hhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHH
Q 008489 364 H-KSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442 (564)
Q Consensus 364 ~-~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~ 442 (564)
. .+.....|||.+.++...+++++. +++..+.+ |+|..+|++..+..+.+.|..||+++.++.+|.+|+.|
T Consensus 707 ~~~Fe~fS~PEIlk~Pve~lvLqMKs-------MnI~kVvn-FPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~m 778 (1172)
T KOG0926|consen 707 SNDFEEFSLPEILKKPVESLVLQMKS-------MNIDKVVN-FPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAM 778 (1172)
T ss_pred hcchhhhccHHHhhCcHHHHHHHHHh-------cCccceec-CCCCCCccHHHHHHHHHHHHHhccccccCCcccccchh
Confidence 4 578899999999999999999998 89999998 99999999999999999999999999999999999999
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHhhcCccchh
Q 008489 443 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475 (564)
Q Consensus 443 ~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 475 (564)
..+ | ..|+.++||+..-+..|..-.+.+.
T Consensus 779 S~F-P---lsPrfsKmL~~~~Q~~~lpy~i~lv 807 (1172)
T KOG0926|consen 779 SLF-P---LSPRFSKMLATSDQHNLLPYNIALV 807 (1172)
T ss_pred ccc-c---cChhHHHHHHHHHhhcchhHHHHHH
Confidence 988 9 7899999999888877776655553
No 12
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=5.5e-41 Score=367.20 Aligned_cols=394 Identities=18% Similarity=0.154 Sum_probs=301.9
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHHHHHHHHHHHHHh-c----CCeeEEEeCcc
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRLLAWEVAKRLNK-A----NVSCDLITGQE 135 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~-------~~~li~~P~r~La~q~~~~l~~-~----g~~~~~~~G~~ 135 (564)
.+..+ .++++++++|+|||||||+++|++++. .++++.+|+|..|..+++|++. . |-.|++..+-+
T Consensus 181 Il~~i--~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~ 258 (924)
T KOG0920|consen 181 ILDAI--EENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLE 258 (924)
T ss_pred HHHHH--HhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeee
Confidence 44444 358999999999999999999999873 3556669999999999999983 3 55555555555
Q ss_pred ccccCCCceEEEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccC------ccceEEEccCCCch--
Q 008489 136 REEVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVP-- 200 (564)
Q Consensus 136 ~~~~~~~~~i~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~------~~~~~l~~~~~~~~-- 200 (564)
......+.+.+||+..+ ..+.++.++|+||+|+++.+ ++.++.+. ...++++-++++++
T Consensus 259 ~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~------~DflLi~lk~lL~~~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 259 SKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSIN------TDFLLILLKDLLPRNPDLKVILMSATLDAE 332 (924)
T ss_pred cccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCC------cccHHHHHHHHhhhCCCceEEEeeeecchH
Confidence 55555789999999543 45799999999999999876 44443322 35667777777775
Q ss_pred HHHHHHH------HcCCceEEEeecc-------------cCCC----CC---------CC---------cccccc-cccc
Q 008489 201 LIQQILQ------VTGDDVKVQSYER-------------LSPL----VP---------LN---------VPLGSF-SNIQ 238 (564)
Q Consensus 201 ~~~~l~~------~~g~~~~v~~~~~-------------~~~~----~~---------~~---------~~l~~l-~~~~ 238 (564)
.+..++. ..|..++|..++- ..+. .. .. ..+..+ ....
T Consensus 333 ~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~ 412 (924)
T KOG0920|consen 333 LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREF 412 (924)
T ss_pred HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCC
Confidence 2222222 2344555544310 0000 00 00 000111 1224
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcC------CCeEEEEcCCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-c
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRG------KHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~------~~~v~~lhg~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v 309 (564)
.|.++||+ +..++..+...|.... ..-+.++|+.|+.+ +|...|+. |.|.+|||+|||++|++|+|| |
T Consensus 413 ~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~---eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDV 489 (924)
T KOG0920|consen 413 EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSE---EQQAVFKRPPKGTRKIILATNIAETSITIDDV 489 (924)
T ss_pred CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChH---HHHHhcCCCCCCcchhhhhhhhHhhcccccCe
Confidence 78889998 8999999999997532 24588999999999 66667777 457799999999999999996 9
Q ss_pred cEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhC-CCChhhhhcCC
Q 008489 310 SRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGL 379 (564)
Q Consensus 310 ~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~-~~~~ei~~~~l 379 (564)
.+||+.+..| ||+. ...|+|.+++.||+|||||..+ |+||.+++.. .++.++. .+.|||.|.++
T Consensus 490 vyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~--~~~~~~~~~q~PEilR~pL 563 (924)
T KOG0920|consen 490 VYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRS--RYEKLMLAYQLPEILRTPL 563 (924)
T ss_pred EEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechh--hhhhcccccCChHHHhChH
Confidence 9999998765 7765 4689999999999999999998 9999999987 6777666 99999999999
Q ss_pred CCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHH
Q 008489 380 FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGL 459 (564)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l 459 (564)
...++++|. ..-....++++. .+++|+...+..++.-|..+|++.....||++|+++..+ | .|+.+++++
T Consensus 564 ~~l~L~iK~----l~~~~~~~fLsk--aldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~l-P---vd~~igK~l 633 (924)
T KOG0920|consen 564 EELCLHIKV----LEQGSIKAFLSK--ALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASL-P---VDVRIGKLL 633 (924)
T ss_pred HHhhheeee----ccCCCHHHHHHH--hcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhC-C---Cccccchhh
Confidence 999999994 112344566653 378888899999999999999999999999999999988 9 788999999
Q ss_pred HHHHHHHhhcCccchhhhcc-CCCCCCCCc
Q 008489 460 TQFATNYSKKGIVQLREIFT-PGTLQVPKT 488 (564)
Q Consensus 460 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 488 (564)
+-++.+.|.+..+++++.+. +.||..|.+
T Consensus 634 l~g~if~cLdp~l~iaa~Ls~k~PF~~~~~ 663 (924)
T KOG0920|consen 634 LFGAIFGCLDPALTIAAALSFKSPFVSPLG 663 (924)
T ss_pred eehhhccccchhhhHHHHhccCCCcccCCC
Confidence 99999999999999998884 788877654
No 13
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-40 Score=371.22 Aligned_cols=409 Identities=20% Similarity=0.231 Sum_probs=287.4
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAW 115 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~ 115 (564)
+++.+.+.+++. |+..|+++|. +++... ..++++++++|||||||+++..+ +..+++++|++|+++||.
T Consensus 8 lp~~~~~~l~~~-----g~~~l~p~Q~~ai~~~~-~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 8 LPEGVIEFYEAE-----GIEELYPPQAEAVEAGL-LDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred CCHHHHHHHHhC-----CCCcCCHHHHHHHHHHH-hCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 889999999998 9999999999 888732 56899999999999999997444 345689999999999999
Q ss_pred HHHHHHHhc---CCeeEEEeCcccccc---CCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHH
Q 008489 116 EVAKRLNKA---NVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (564)
Q Consensus 116 q~~~~l~~~---g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ 181 (564)
|++++++++ |++++.++|+..... ....++++||+.++ ++.+++++|+||+|++.+..||..+..+
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHH
Confidence 999999865 899999999764432 35789999998763 3578999999999999988889887665
Q ss_pred Hhcc--CccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCC----------------C-----Ccccccccc-c
Q 008489 182 LLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------------L-----NVPLGSFSN-I 237 (564)
Q Consensus 182 ll~l--~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~----------------~-----~~~l~~l~~-~ 237 (564)
+-.+ .....++++.+++.++...+..|.+... +....++.++.. . ...+..+.+ .
T Consensus 162 l~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL 240 (737)
T ss_pred HHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH
Confidence 4333 2345788999999988888888876432 111111111110 0 001111111 1
Q ss_pred -cCCCeEEEc-cHHHHHHHHHHHHHcC-----------------------------------CCeEEEEcCCCCHHHHHH
Q 008489 238 -QTGDCIVTF-SRHAIYRLKKAIESRG-----------------------------------KHLCSIVYGSLPPETRTR 280 (564)
Q Consensus 238 -~~g~~iv~~-s~~~~~~l~~~L~~~~-----------------------------------~~~v~~lhg~l~~~~R~~ 280 (564)
..+.++||+ |+++++.+++.|.... ..++++|||+|++++|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 456777777 8999998888775431 136999999999999999
Q ss_pred HHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCc-cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 281 ~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~-~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++.|++ |.++|||||+++++|+|+|...||+.+..+||+. ...|++..+|.||+|||||.|.+ ..|.++.+....
T Consensus 321 ve~~Fr~--G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~ 397 (737)
T PRK02362 321 VEDAFRD--RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD-PYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHc--CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC-CCceEEEEecCc
Confidence 9999999 9999999999999999999777888888888875 45789999999999999999974 568888887653
Q ss_pred --H-HHHHhhhCCCChhhhhcCCCC--cHHHHHHHHhhCCCCCHHHHHHHH--HHhcccCCC------ccccCHHHHHHH
Q 008489 360 --L-PLLHKSLLEPSPMLESAGLFP--NFDLIYMYSRLHPDSSLYGILEHF--LENAKLSEN------YFFANCEEVLKV 426 (564)
Q Consensus 360 --~-~~~~~~~~~~~~ei~~~~l~~--~~~~l~~~~~~~~~~~~~~~l~~f--~~~~~~~~~------~~~~~~~~l~~l 426 (564)
. +.+++++.....++.+.-..+ ...++.+........+..++.+.+ .++...... ....+++.|.+.
T Consensus 398 ~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~ 477 (737)
T PRK02362 398 DELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERN 477 (737)
T ss_pred hhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHC
Confidence 2 345667765554444332222 222333222222233445554421 222222211 123344455555
Q ss_pred HHHhccC---CCCHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 008489 427 ATVIDQL---PLRLHEKYLFCISPVDMNDDISSQGLTQFA 463 (564)
Q Consensus 427 ~~~~~~~---~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~ 463 (564)
+.+..+. ..|..|+.+..+ + .+|..+..+....
T Consensus 478 ~~i~~~~~~~~~t~lG~~~s~~-~---l~~~t~~~~~~~l 513 (737)
T PRK02362 478 GMIEEDGETLEATELGHLVSRL-Y---IDPLSAAEIIDGL 513 (737)
T ss_pred CCeeecCCeEeEChHHHHHHHh-c---CCHHHHHHHHHHh
Confidence 5444333 278899998877 7 5676666665543
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.7e-40 Score=366.75 Aligned_cols=408 Identities=20% Similarity=0.173 Sum_probs=289.6
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAW 115 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~ 115 (564)
+++.+.+.+.+. ++. ++++|. +++.+ .+++++++++|||||||+++..+++ .+++++|++|+++||.
T Consensus 8 l~~~~~~~~~~~-----~~~-l~~~Q~~ai~~l--~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 8 YDDEFLNLFTGN-----DFE-LYDHQRMAIEQL--RKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred CCHHHHHHHhhC-----CCC-CCHHHHHHHHHH--hcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 788899998888 676 999999 99987 6699999999999999999765543 4678999999999999
Q ss_pred HHHHHHHh---cCCeeEEEeCcccccc---CCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHH
Q 008489 116 EVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (564)
Q Consensus 116 q~~~~l~~---~g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ 181 (564)
|+++.+.+ .|..+...+|+..... ....++++|++.++ .+.+++++|+||+|++.+..||..+..+
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~l 159 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETV 159 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHH
Confidence 99998874 4888999988754322 36789999997653 2578999999999999988889887665
Q ss_pred Hhcc--CccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCC------------CC-c--cc-ccccc--ccCCC
Q 008489 182 LLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------------LN-V--PL-GSFSN--IQTGD 241 (564)
Q Consensus 182 ll~l--~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~------------~~-~--~l-~~l~~--~~~g~ 241 (564)
+..+ .....++++.+++.++..++.+|.+... +....++.|+.. .. . .+ ..+.+ ...++
T Consensus 160 l~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 160 LSSARYVNPDARILALSATVSNANELAQWLNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred HHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCc-cCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCc
Confidence 4322 2345778888899888888888876432 111222222210 00 0 00 11111 13567
Q ss_pred eEEEc-cHHHHHHHHHHHHHcC------------------------CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEE
Q 008489 242 CIVTF-SRHAIYRLKKAIESRG------------------------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (564)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~------------------------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlV 296 (564)
++||+ ++++++.+++.|.+.. ..++.++||+|++++|..+++.|++ |.++|||
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLv 316 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIV 316 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 77777 8999999998886531 1258999999999999999999999 9999999
Q ss_pred eccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEe--cCCCHHHHHhhhCCCChhh
Q 008489 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL--DSEDLPLLHKSLLEPSPML 374 (564)
Q Consensus 297 aT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l--~~~~~~~~~~~~~~~~~ei 374 (564)
||+++++|+|+|...||+.+.++|++....|+|..+|.||+|||||.|.+ +.|.++.+ ..++.+.+++++...++++
T Consensus 317 aT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d-~~g~~~i~~~~~~~~~~~~~~l~~~~~pi 395 (674)
T PRK01172 317 ATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD-QYGIGYIYAASPASYDAAKKYLSGEPEPV 395 (674)
T ss_pred ecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC-CcceEEEEecCcccHHHHHHHHcCCCCce
Confidence 99999999999988999999999988888899999999999999999964 33444443 3344567778885555444
Q ss_pred hhcCCCCcHHHHH--HHHhhCCCCCHHHHHHH--HHHh--cccC---CCccccCHHHHHHHHHHhcc--CCCCHHHHHHH
Q 008489 375 ESAGLFPNFDLIY--MYSRLHPDSSLYGILEH--FLEN--AKLS---ENYFFANCEEVLKVATVIDQ--LPLRLHEKYLF 443 (564)
Q Consensus 375 ~~~~l~~~~~~l~--~~~~~~~~~~~~~~l~~--f~~~--~~~~---~~~~~~~~~~l~~l~~~~~~--~~lt~~~~~~~ 443 (564)
...-..+..+.+. +.....-..+..++.+. +.++ ...+ .+....+++.|...+.+.++ ...|..|+.+.
T Consensus 396 ~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s 475 (674)
T PRK01172 396 ISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTS 475 (674)
T ss_pred eecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHH
Confidence 4322222222221 11111122344555542 1223 2111 22344566677777777644 34799999988
Q ss_pred hccCCCCCCHHHHHHHHHHHH
Q 008489 444 CISPVDMNDDISSQGLTQFAT 464 (564)
Q Consensus 444 ~~~P~~~~~~~~~~~l~~~~~ 464 (564)
.+ | .+|..+..+.....
T Consensus 476 ~~-~---l~~~t~~~~~~~l~ 492 (674)
T PRK01172 476 DL-Y---IDPESALILKSAFD 492 (674)
T ss_pred Hh-C---CCHHHHHHHHHHhh
Confidence 88 8 67888877766544
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=323.03 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=239.2
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCC---CEEEEccHH
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSS---SGIYCGPLR 111 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~~~---~~li~~P~r 111 (564)
.+++.+.++++.. ++..|+++|. ++|.+ +.|++||..|+||||||.++ ++.|++.+ .++|++|+|
T Consensus 67 gv~~~L~~ac~~l-----~~~~PT~IQ~~aiP~~--L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 67 GVHPELLEACQEL-----GWKKPTKIQSEAIPVA--LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred CcCHHHHHHHHHh-----CcCCCchhhhhhcchh--hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 3799999999999 9999999999 99999 77999999999999999996 45555554 579999999
Q ss_pred HHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceec-cc--------cCcccEEEEccccccCCC
Q 008489 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-DV--------VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~-~~--------l~~~~~vViDEaH~~~~~ 172 (564)
+||.|+++.+..+ |+.|.++.|+.... .....++++||..+ +. +..++++|+||||.+.|+
T Consensus 140 ELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~ 219 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM 219 (476)
T ss_pred HHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh
Confidence 9999999999976 67888888876433 34678899999433 32 578999999999999999
Q ss_pred CCcchHHHHHhccCccceEEEccCCCchHHHHHHHHcCC-c--eEEEe----------ecccCCCCCCCccc-ccccccc
Q 008489 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-D--VKVQS----------YERLSPLVPLNVPL-GSFSNIQ 238 (564)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~-~--~~v~~----------~~~~~~~~~~~~~l-~~l~~~~ 238 (564)
+.+..+..+|-.++.....+..+.+..+.+.++....-+ . +.+.. ++...|...+...+ ..+++..
T Consensus 220 dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~ 299 (476)
T KOG0330|consen 220 DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA 299 (476)
T ss_pred hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhc
Confidence 888888888888887777777776666667666644322 1 22222 12223334444444 3334445
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecC
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
.+..+||+ +...+..++-.|+..+. .+.++||.|++..|...++.|++ |.++||||||++++|+|+| |+.|||||
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqmsq~~Rlg~l~~Fk~--~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQMSQSKRLGALNKFKA--GARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCc-ceecccchhhHHHHHHHHHHHhc--cCCcEEEecchhcccCCCCCceEEEecC
Confidence 56677777 67888999999988887 89999999999999999999999 9999999999999999998 99999999
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
. |.+..+|+||+||+||.|.. |.++.+.+
T Consensus 377 i---------P~~skDYIHRvGRtaRaGrs---G~~ItlVt 405 (476)
T KOG0330|consen 377 I---------PTHSKDYIHRVGRTARAGRS---GKAITLVT 405 (476)
T ss_pred C---------CCcHHHHHHHcccccccCCC---cceEEEEe
Confidence 9 77999999999999999987 88888754
No 16
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2e-39 Score=354.27 Aligned_cols=347 Identities=15% Similarity=0.081 Sum_probs=240.7
Q ss_pred ccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------------CCCEEEEccHHHHHHHHHHHHHhc
Q 008489 65 PHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------------SSSGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 65 ~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------------------~~~~li~~P~r~La~q~~~~l~~~ 124 (564)
+|+ .++.+ +++++++++|+||||||+++||+++. .+++++++|||+||.|++.++.+.
T Consensus 168 iQ~qil~~i--~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 168 VQLKIFEAW--ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHH--HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 344 77777 56999999999999999998766532 236788999999999999998742
Q ss_pred -------CCeeEEEeCccccc-----cCCCceEEEccee-ccccCcccEEEEccccccCCCCCcchHHHHHhccCc----
Q 008489 125 -------NVSCDLITGQEREE-----VDGAKHRAVTVEM-ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA---- 187 (564)
Q Consensus 125 -------g~~~~~~~G~~~~~-----~~~~~~i~~T~e~-~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~---- 187 (564)
|.++.+..|+.... .....++++|+.+ ...+.++++|||||||++... ++.++++..
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~------~DllL~llk~~~~ 319 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQI------GDIIIAVARKHID 319 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccc------hhHHHHHHHHhhh
Confidence 45677778876422 1245678888765 346899999999999999876 455544332
Q ss_pred cceEEEccCCCch-HHHHHHHHcCCc----------eEEEeecccCCCC---------C-CCcccccccc---ccCCCeE
Q 008489 188 NELHLCGDPAAVP-LIQQILQVTGDD----------VKVQSYERLSPLV---------P-LNVPLGSFSN---IQTGDCI 243 (564)
Q Consensus 188 ~~~~l~~~~~~~~-~~~~l~~~~g~~----------~~v~~~~~~~~~~---------~-~~~~l~~l~~---~~~g~~i 243 (564)
+.-+++..++|.+ ....+....++. +++..++...... . ....+..+.. ..+++++
T Consensus 320 ~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iL 399 (675)
T PHA02653 320 KIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGI 399 (675)
T ss_pred hcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEE
Confidence 2114455555653 234444444332 2222222111100 0 0001112221 2356888
Q ss_pred EEc-cHHHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHH-hCCCCCeeEEEeccccccccccC-ccEEEecCccc
Q 008489 244 VTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF-NDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (564)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~F-~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k 319 (564)
||+ ++.+++.+++.|++.. ...+.++||++++. .++++.| ++ |+++||||||++|+||||| |++||++|..+
T Consensus 400 VFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~--gk~kILVATdIAERGIDIp~V~~VID~G~~k 475 (675)
T PHA02653 400 VFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSS--KNPSIIISTPYLESSVTIRNATHVYDTGRVY 475 (675)
T ss_pred EEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhcc--CceeEEeccChhhccccccCeeEEEECCCcc
Confidence 888 8999999999998763 45899999999985 3555666 56 8999999999999999997 99999998433
Q ss_pred c---CCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCC
Q 008489 320 F---DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 396 (564)
Q Consensus 320 ~---~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~ 396 (564)
. .+....|+|.++|.||+|||||.++ |.|+++++++. . .+.+++...+|.+.+++++.|+...++
T Consensus 476 ~p~~~~g~~~~iSkasa~QRaGRAGR~~~----G~c~rLyt~~~--~-----~pI~ri~~~~L~~~vL~lk~~g~~~~~- 543 (675)
T PHA02653 476 VPEPFGGKEMFISKSMRTQRKGRVGRVSP----GTYVYFYDLDL--L-----KPIKRIDSEFLHNYILYAKYFNLTLPE- 543 (675)
T ss_pred CCCcccCcccccCHHHHHHhccCcCCCCC----CeEEEEECHHH--h-----HHHHHHhHHHHHHHHHHHHHcCCCCcc-
Confidence 2 2223568899999999999999966 99999998762 1 113333333478999999997653222
Q ss_pred CHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHH--HHHHHhc
Q 008489 397 SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH--EKYLFCI 445 (564)
Q Consensus 397 ~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~--~~~~~~~ 445 (564)
+.++++|+...+..+.+.|..+|+.++ .+|.+ |+++..+
T Consensus 544 --------~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~ 584 (675)
T PHA02653 544 --------DLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML 584 (675)
T ss_pred --------cccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH
Confidence 227999999999999999999996655 47777 7664433
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-39 Score=332.12 Aligned_cols=298 Identities=18% Similarity=0.190 Sum_probs=228.5
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHc---------CCCEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLES---------SSSGI 105 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~---------~~~~l 105 (564)
.+.+.+..+++.. +|..|+++|. .+|.+ +.|++++..+.||||||++++ ..+.. .++++
T Consensus 97 ~ls~~~~~~lk~~-----g~~~PtpIQaq~wp~~--l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 97 GLSEELMKALKEQ-----GFEKPTPIQAQGWPIA--LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred cccHHHHHHHHhc-----CCCCCchhhhccccee--ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 4788888999999 9999999999 99999 789999999999999999963 33333 24679
Q ss_pred EEccHHHHHHHHHHHHHhc----CCeeEEEeCcccccc------CCCceEEEcceec-c-------ccCcccEEEEcccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREEV------DGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~------~~~~~i~~T~e~~-~-------~l~~~~~vViDEaH 167 (564)
|++|||+||.|+.+.+.++ ++.+.+++|+..... .+..++++||..+ + .++++.++|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 9999999999999999865 455777888765432 3688999999433 3 36899999999999
Q ss_pred ccCCCCCcchHHHHHhccCccc-eEEEccCCCchHHHHHHHH-cCCceEEEeeccc--CCCCC------------C----
Q 008489 168 MLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQV-TGDDVKVQSYERL--SPLVP------------L---- 227 (564)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~-~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~--~~~~~------------~---- 227 (564)
.|.+........+++-.+.... ..++.+.+-...++.++.. .++...+..-... ..... +
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 9998844455677777773433 3444444444455555533 3333333222111 00000 0
Q ss_pred CccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccc
Q 008489 228 NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (564)
Q Consensus 228 ~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gld 306 (564)
...+..+....++++|||+ +++.|+++...++..+. ++..+||+.++.+|..+++.|++ |+..||||||++++|||
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccccHHHHHHHHHhccc--CCcceEEEcccccccCC
Confidence 1111122223567788888 89999999999998775 89999999999999999999999 99999999999999999
Q ss_pred cC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 307 ip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|| |++||+|+. |.+.++|+||+||+||.|.. |.++.|...+
T Consensus 407 i~dV~lVInydf---------P~~vEdYVHRiGRTGRa~~~---G~A~tfft~~ 448 (519)
T KOG0331|consen 407 VPDVDLVINYDF---------PNNVEDYVHRIGRTGRAGKK---GTAITFFTSD 448 (519)
T ss_pred CccccEEEeCCC---------CCCHHHHHhhcCccccCCCC---ceEEEEEeHH
Confidence 97 999999999 66999999999999999987 9999887655
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-38 Score=335.44 Aligned_cols=300 Identities=17% Similarity=0.197 Sum_probs=219.1
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c---------
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------- 100 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~--------- 100 (564)
|+++. +++.+.+.+... ||..|+++|+ ++|.+ +++++++++||||||||++++..++ .
T Consensus 10 f~~~~-l~~~l~~~l~~~-----g~~~pt~iQ~~aip~i--l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~ 81 (423)
T PRK04837 10 FSDFA-LHPQVVEALEKK-----GFHNCTPIQALALPLT--LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKV 81 (423)
T ss_pred HhhCC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCcEEEECCCCchHHHHHHHHHHHHHHhccccccccc
Confidence 33443 899999999999 9999999999 99998 6799999999999999999754443 1
Q ss_pred -CCCEEEEccHHHHHHHHHHHHHh----cCCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEE
Q 008489 101 -SSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCA 161 (564)
Q Consensus 101 -~~~~li~~P~r~La~q~~~~l~~----~g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~v 161 (564)
..+++|++|+|+||.|+++.+.. .|+.+..++|+.... ..+..++++||+.+. .+.+++++
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 23689999999999999887764 378888888865321 235689999996542 25789999
Q ss_pred EEccccccCCCCCcch--HHHHHhccCc--cceEEEccCCCchHHHHHH-HHcCCceEEEeecccCCCC-----------
Q 008489 162 VIDEIQMLGCKTRGFS--FTRALLGICA--NELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLSPLV----------- 225 (564)
Q Consensus 162 ViDEaH~~~~~~rg~~--~~~~ll~l~~--~~~~l~~~~~~~~~~~~l~-~~~g~~~~v~~~~~~~~~~----------- 225 (564)
||||||++.+. |+. ...++-.+.. ....+..+.+.......+. ........+..........
T Consensus 162 ViDEad~l~~~--~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 162 VLDEADRMFDL--GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred EEecHHHHhhc--ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH
Confidence 99999999865 543 3334433432 2222333332223333333 2233322221110000000
Q ss_pred -CCCccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccc
Q 008489 226 -PLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302 (564)
Q Consensus 226 -~~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~ 302 (564)
.....+ ..+.....+.+|||+ ++..++.+++.|...+. .+..+||++++++|..+++.|++ |+.+||||||+++
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTdv~~ 316 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVAQKKRLRILEEFTR--GDLDILVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCChhHHHHHHHHHHc--CCCcEEEEechhh
Confidence 000011 111222356677777 89999999999988876 89999999999999999999999 9999999999999
Q ss_pred cccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 303 MGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 303 ~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+|||+| |++||+++. |.+..+|+||+||+||.|.. |.++.|..++
T Consensus 317 rGiDip~v~~VI~~d~---------P~s~~~yiqR~GR~gR~G~~---G~ai~~~~~~ 362 (423)
T PRK04837 317 RGLHIPAVTHVFNYDL---------PDDCEDYVHRIGRTGRAGAS---GHSISLACEE 362 (423)
T ss_pred cCCCccccCEEEEeCC---------CCchhheEeccccccCCCCC---eeEEEEeCHH
Confidence 999998 999999999 66999999999999999987 9999887654
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-37 Score=330.78 Aligned_cols=296 Identities=17% Similarity=0.184 Sum_probs=217.7
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C---------CCEEE
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---------SSGIY 106 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----~---------~~~li 106 (564)
+++.+.+.+.+. ++..|+++|+ ++|.+ ++++++++++|||||||++++..+++ . .++||
T Consensus 8 l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 8 LSPDILRAVAEQ-----GYREPTPIQQQAIPAV--LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 789999999999 9999999999 99998 56999999999999999997544431 1 25899
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
++|||+||.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+. .+++++++||||||.
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999998854 66777777765322 235789999996542 368899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHHc-CCceEEEeecccCCCCCC------------Ccccccc
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVT-GDDVKVQSYERLSPLVPL------------NVPLGSF 234 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~-g~~~~v~~~~~~~~~~~~------------~~~l~~l 234 (564)
+.+......+..++-.+......+ ..+++. +.+..+.... .+...+....+....... ...+..+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l-~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNL-LFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEE-EEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 986533233344443444433333 333444 3344555432 232222221111111100 0111111
Q ss_pred -ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 235 -SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 235 -~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
.......+|||+ ++..++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+| |++
T Consensus 240 ~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKSQGARTRALADFKS--GDIRVLVATDIAARGLDIEELPH 316 (456)
T ss_pred HHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHhcCCCcccCCE
Confidence 122345677777 89999999999988776 89999999999999999999999 9999999999999999997 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
||+++. |.+..+|+||+|||||.|.. |.++.+...+
T Consensus 317 VI~~~~---------P~~~~~yvqR~GRaGR~g~~---G~ai~l~~~~ 352 (456)
T PRK10590 317 VVNYEL---------PNVPEDYVHRIGRTGRAAAT---GEALSLVCVD 352 (456)
T ss_pred EEEeCC---------CCCHHHhhhhccccccCCCC---eeEEEEecHH
Confidence 999999 66999999999999999987 8887775433
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.8e-37 Score=335.88 Aligned_cols=297 Identities=18% Similarity=0.162 Sum_probs=216.2
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c--------CCCEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~--------~~~~li 106 (564)
.+++.+.+.+++. ||..|+++|. ++|.+ +.++++++++|||||||++++..++ . +..+||
T Consensus 136 ~l~~~l~~~l~~~-----g~~~pt~iQ~~aip~~--l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 136 SFPDYILKSLKNA-----GFTEPTPIQVQGWPIA--LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 4789999999999 9999999999 99998 6799999999999999999743322 1 235799
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceec--------cccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~--------~~l~~~~~vViDEaH~ 168 (564)
++|||+||.|+.+.+.++ ++.+..++|+.... ..+..++++||+.+ ..+.++++|||||||+
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 999999999999998865 46666777764321 23678999999543 2357899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHHcC-C-ceEEEeec-ccCCCCC------------CCccc-
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVTG-D-DVKVQSYE-RLSPLVP------------LNVPL- 231 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~g-~-~~~v~~~~-~~~~~~~------------~~~~l- 231 (564)
+.+......+..++-.+... .+++..+++. +.+..+....- . ...+..-. ....... +...+
T Consensus 289 mld~gf~~~i~~il~~~~~~-~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPD-RQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCC-CeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 98653223344444444333 3333334443 33444443221 1 11111100 0000000 00011
Q ss_pred cccccc--cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 232 GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 232 ~~l~~~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
..+... ..+.+|||+ +++.++.+++.|+..+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+|
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDKKQEERTWVLNEFKT--GKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcchhhcCCCcc
Confidence 111111 345677777 89999999999987766 79999999999999999999999 9999999999999999997
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|++||+++. |.+..+|+||+||+||.|.. |.++.+.+.+
T Consensus 445 ~v~~VI~~d~---------P~s~~~yvqRiGRtGR~G~~---G~ai~~~~~~ 484 (545)
T PTZ00110 445 DVKYVINFDF---------PNQIEDYVHRIGRTGRAGAK---GASYTFLTPD 484 (545)
T ss_pred cCCEEEEeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEECcc
Confidence 999999999 56999999999999999987 9999887655
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-37 Score=340.12 Aligned_cols=302 Identities=17% Similarity=0.214 Sum_probs=218.2
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------- 100 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------------- 100 (564)
|.++. |++.+.+.+++. ||..|+++|+ +||.+ ++++++++++|||||||++++..+++
T Consensus 11 f~~l~-l~~~l~~~L~~~-----g~~~ptpiQ~~~ip~~--l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~ 82 (572)
T PRK04537 11 FSSFD-LHPALLAGLESA-----GFTRCTPIQALTLPVA--LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKP 82 (572)
T ss_pred hhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccccccc
Confidence 44554 889999999999 9999999999 99998 67999999999999999997554432
Q ss_pred -CCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc---------ccCcccE
Q 008489 101 -SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDC 160 (564)
Q Consensus 101 -~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~---------~l~~~~~ 160 (564)
..++||++|||+||.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+. .+..+++
T Consensus 83 ~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~ 162 (572)
T PRK04537 83 EDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEI 162 (572)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheee
Confidence 247899999999999999998854 67788888865332 235679999995541 2467889
Q ss_pred EEEccccccCCCCCcchHHHHHhccCcc-ceEEEccCCCc-hHHHHHH-HHcCCceEEEe-ecccCCC-----------C
Q 008489 161 AVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV-PLIQQIL-QVTGDDVKVQS-YERLSPL-----------V 225 (564)
Q Consensus 161 vViDEaH~~~~~~rg~~~~~~ll~l~~~-~~~l~~~~~~~-~~~~~l~-~~~g~~~~v~~-~~~~~~~-----------~ 225 (564)
+||||||++.+.........++-.+... ..+++..+++. ..+..+. ........+.. ....... .
T Consensus 163 lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 163 CVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADE 242 (572)
T ss_pred eEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHH
Confidence 9999999998542222233333333321 22333333343 2222222 22222211111 0000000 0
Q ss_pred CCCccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccc
Q 008489 226 PLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303 (564)
Q Consensus 226 ~~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~ 303 (564)
.....+ ..+.......+|||+ ++..++.+++.|.+.+. .+..+||+|++.+|..+++.|++ |+.+||||||++++
T Consensus 243 ~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTdv~ar 319 (572)
T PRK04537 243 EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVPQKKRESLLNRFQK--GQLEILVATDVAAR 319 (572)
T ss_pred HHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEehhhhc
Confidence 000011 112223445677777 89999999999988876 89999999999999999999999 99999999999999
Q ss_pred ccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 304 GLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 304 Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|||+| |++||+++. |.+..+|+||+||+||.|.. |.++.|..++
T Consensus 320 GIDip~V~~VInyd~---------P~s~~~yvqRiGRaGR~G~~---G~ai~~~~~~ 364 (572)
T PRK04537 320 GLHIDGVKYVYNYDL---------PFDAEDYVHRIGRTARLGEE---GDAISFACER 364 (572)
T ss_pred CCCccCCCEEEEcCC---------CCCHHHHhhhhcccccCCCC---ceEEEEecHH
Confidence 99998 999999998 66999999999999999987 8888886553
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-37 Score=334.84 Aligned_cols=302 Identities=20% Similarity=0.170 Sum_probs=223.4
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~-------~~~li 106 (564)
|..+. +++.+.+.+.+. |+..|+++|+ ++|.+ +++++++++||||||||+++..++++. .+++|
T Consensus 6 f~~l~-l~~~l~~~l~~~-----g~~~~t~iQ~~ai~~~--l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~li 77 (460)
T PRK11776 6 FSTLP-LPPALLANLNEL-----GYTEMTPIQAQSLPAI--LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALV 77 (460)
T ss_pred hhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEE
Confidence 34443 889999999999 9999999999 99998 569999999999999999975555431 26899
Q ss_pred EccHHHHHHHHHHHHHhc-----CCeeEEEeCcccc------ccCCCceEEEcceecc--------ccCcccEEEEcccc
Q 008489 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~------~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH 167 (564)
++|||+||.|+++.++.+ ++.+..++|+... ...+..++++||+.+. .+.+++++|+||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 999999999999988753 5778888886533 1246789999996542 25789999999999
Q ss_pred ccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHc-CCceEEEeecccC-----------CCCCCCccc-ccc
Q 008489 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS-----------PLVPLNVPL-GSF 234 (564)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~-g~~~~v~~~~~~~-----------~~~~~~~~l-~~l 234 (564)
++.+...+..+..++-.+......+..+.+..+.+..+.... .....+....... +.......+ ..+
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 998653333344444444433333333333334444444432 2222222111000 000011111 122
Q ss_pred ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE
Q 008489 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (564)
Q Consensus 235 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V 312 (564)
....++.++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |..+|||||+++++|+|+| +++|
T Consensus 238 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 238 LHHQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQRDRDQVLVRFAN--RSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HhcCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEecccccccchhcCCeE
Confidence 233456677777 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|+++. |.+..+|+||+||+||.|.. |.++.++..+
T Consensus 315 I~~d~---------p~~~~~yiqR~GRtGR~g~~---G~ai~l~~~~ 349 (460)
T PRK11776 315 INYEL---------ARDPEVHVHRIGRTGRAGSK---GLALSLVAPE 349 (460)
T ss_pred EEecC---------CCCHhHhhhhcccccCCCCc---ceEEEEEchh
Confidence 99999 56999999999999999987 9999887654
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.6e-37 Score=333.23 Aligned_cols=300 Identities=20% Similarity=0.206 Sum_probs=218.0
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------------
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------- 99 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~------------- 99 (564)
.|..+ .+++.+.+.+++. ||..|+++|. ++|.+ +.++++++++|||||||++++..++
T Consensus 122 ~f~~~-~l~~~l~~~L~~~-----g~~~ptpiQ~~aip~i--l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 122 SFSSC-GLPPKLLLNLETA-----GYEFPTPIQMQAIPAA--LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred CHHhC-CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 34444 3899999999988 9999999999 99998 6799999999999999999755443
Q ss_pred -cCCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCcccc------ccCCCceEEEcceec-c-------ccCcccE
Q 008489 100 -SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMA-D-------VVSDYDC 160 (564)
Q Consensus 100 -~~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~------~~~~~~~i~~T~e~~-~-------~l~~~~~ 160 (564)
.+++++|++|||+||.|+++.++.+ ++.+..+.|+... ...+..++++||+.+ + .+.++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 1246899999999999999887754 4556666665432 224678999999654 1 3688999
Q ss_pred EEEccccccCCCCCcch--HHHHHhccCccceEEEccCCCc-hHHHHHHHHcCCceEEEeecccC-CCCC----------
Q 008489 161 AVIDEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSYERLS-PLVP---------- 226 (564)
Q Consensus 161 vViDEaH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~g~~~~v~~~~~~~-~~~~---------- 226 (564)
+||||||.+.+. |+. ...++..+... ++++.+++. +.+..+................. +...
T Consensus 274 lViDEad~ml~~--gf~~~i~~i~~~l~~~--q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 274 LVLDEVDCMLER--GFRDQVMQIFQALSQP--QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET 349 (518)
T ss_pred EEeecHHHHhhc--chHHHHHHHHHhCCCC--cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc
Confidence 999999999854 543 33343334332 333334444 34455555443322222111111 0000
Q ss_pred --CCccc-cccccc--cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccc
Q 008489 227 --LNVPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (564)
Q Consensus 227 --~~~~l-~~l~~~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~ 300 (564)
....+ ..+... ..+.+|||+ ++..++.+++.|.......+..+||++++++|..+++.|++ |+.+|||||++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdv 427 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGV 427 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecH
Confidence 00011 111111 124567777 89999999999987555589999999999999999999999 99999999999
Q ss_pred cccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 301 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 301 ~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++|||+| |++||+++. |.+..+|+||+|||||.|.. |.++.+...+
T Consensus 428 l~rGiDip~v~~VI~~d~---------P~s~~~yihRiGRaGR~g~~---G~ai~f~~~~ 475 (518)
T PLN00206 428 LGRGVDLLRVRQVIIFDM---------PNTIKEYIHQIGRASRMGEK---GTAIVFVNEE 475 (518)
T ss_pred hhccCCcccCCEEEEeCC---------CCCHHHHHHhccccccCCCC---eEEEEEEchh
Confidence 99999997 999999999 66999999999999999987 9998887654
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.9e-37 Score=326.26 Aligned_cols=295 Identities=19% Similarity=0.180 Sum_probs=217.3
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-------CCCEEEEc
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-------SSSGIYCG 108 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~-------~~~~li~~ 108 (564)
+++.+.+.+++. |+..|+++|+ ++|.+ ++++++++++|||||||++++..++ + ..+++|++
T Consensus 8 l~~~l~~~l~~~-----g~~~p~~iQ~~ai~~~--~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 8 LDESLLEALQDK-----GYTRPTAIQAEAIPPA--LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 789999999999 9999999999 99998 5699999999999999999754433 2 24689999
Q ss_pred cHHHHHHHHHHHHHh----cCCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccccC
Q 008489 109 PLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 109 P~r~La~q~~~~l~~----~g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~ 170 (564)
|+++||.|+++.+.. .++++..++|+.... ..+..++++||+.+. .+.++++|||||||++.
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 999999999988774 378888898865322 235679999995442 25789999999999998
Q ss_pred CCCCcchHHHHHhccCccceEEEccCCCc--hHHHHHHHHcCC-ceEEEeecccCC-------------CCCCCcccccc
Q 008489 171 CKTRGFSFTRALLGICANELHLCGDPAAV--PLIQQILQVTGD-DVKVQSYERLSP-------------LVPLNVPLGSF 234 (564)
Q Consensus 171 ~~~rg~~~~~~ll~l~~~~~~l~~~~~~~--~~~~~l~~~~g~-~~~v~~~~~~~~-------------~~~~~~~l~~l 234 (564)
+...+..+..+...+... .++++.+++. ..+..+...... ...+........ .......+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~-~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWR-KQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccc-cEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 653333333333333322 2333444444 345555554332 222211110000 00001111111
Q ss_pred -ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 235 -SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 235 -~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
.....+.+|||+ ++.+++.++..|...+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++
T Consensus 240 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 240 LKQPEVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMVQAKRNEAIKRLTD--GRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HhcCCCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHhC--CCCcEEEEccccccCccCCCCCE
Confidence 222445677777 89999999999988766 89999999999999999999999 9999999999999999997 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
||+++. |.|...|+||+||+||.|.. |.++.+...
T Consensus 317 VI~~d~---------p~s~~~yiqr~GR~gR~g~~---g~ai~l~~~ 351 (434)
T PRK11192 317 VINFDM---------PRSADTYLHRIGRTGRAGRK---GTAISLVEA 351 (434)
T ss_pred EEEECC---------CCCHHHHhhcccccccCCCC---ceEEEEecH
Confidence 999998 66999999999999999987 888777653
No 25
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.1e-37 Score=327.81 Aligned_cols=294 Identities=20% Similarity=0.230 Sum_probs=215.1
Q ss_pred cccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeC
Q 008489 56 KFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (564)
Q Consensus 56 ~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G 133 (564)
.||+..|++.|. +++.+ ++++++++++|||||||+++ +..+...+.++|++|+++|+.|+++++...|+++..+.|
T Consensus 6 ~~g~~~~r~~Q~~ai~~~--l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~ 83 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAV--LLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNS 83 (470)
T ss_pred hcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 379999999999 99998 66899999999999999997 455667788999999999999999999999999988887
Q ss_pred ccccc----------cCCCceEEEcceecc----------ccCcccEEEEccccccCCCCCcchHHHHH------hccCc
Q 008489 134 QEREE----------VDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL------LGICA 187 (564)
Q Consensus 134 ~~~~~----------~~~~~~i~~T~e~~~----------~l~~~~~vViDEaH~~~~~~rg~~~~~~l------l~l~~ 187 (564)
..... .....++++||+.+. ...+++++||||||+++ +||+.+...+ ....
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~--~~g~~fr~~~~~l~~l~~~~- 160 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS--QWGHDFRPDYKALGSLKQKF- 160 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC--ccccccHHHHHHHHHHHHHc-
Confidence 65322 224679999997642 24689999999999998 5676543221 1111
Q ss_pred cceEEEccCCCc--hHHHHHHHHcCC---ceEEEeecccCC------C--CCCCccccccccccCC-CeEEEc-cHHHHH
Q 008489 188 NELHLCGDPAAV--PLIQQILQVTGD---DVKVQSYERLSP------L--VPLNVPLGSFSNIQTG-DCIVTF-SRHAIY 252 (564)
Q Consensus 188 ~~~~l~~~~~~~--~~~~~l~~~~g~---~~~v~~~~~~~~------~--~~~~~~l~~l~~~~~g-~~iv~~-s~~~~~ 252 (564)
....+++.+++. .....+....+- .+....+.+..- . ......+..+.+..++ ..|||+ |+++++
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 122334444443 333445554332 111111211110 0 0000111222222233 435555 899999
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHh
Q 008489 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (564)
Q Consensus 253 ~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~ 331 (564)
.++..|++.+. .+..+||+|++++|..+++.|.+ |+.+|||||+++++|||+| |++||+++. |.|..
T Consensus 241 ~la~~L~~~g~-~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------P~s~~ 308 (470)
T TIGR00614 241 QVTASLQNLGI-AAGAYHAGLEISARDDVHHKFQR--DEIQVVVATVAFGMGINKPDVRFVIHYSL---------PKSME 308 (470)
T ss_pred HHHHHHHhcCC-CeeEeeCCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCCcccceEEEEeCC---------CCCHH
Confidence 99999998876 89999999999999999999999 9999999999999999998 999999999 55999
Q ss_pred hHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCC
Q 008489 332 EVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLE 369 (564)
Q Consensus 332 ~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~ 369 (564)
+|+||+|||||.|.. |.|+.++.. +...++.++..
T Consensus 309 ~y~Qr~GRaGR~G~~---~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 309 SYYQESGRAGRDGLP---SECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HHHhhhcCcCCCCCC---ceEEEEechhHHHHHHHHHhc
Confidence 999999999999987 888888654 44555555543
No 26
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-37 Score=329.14 Aligned_cols=299 Identities=23% Similarity=0.283 Sum_probs=225.5
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------CC--C-E
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SS--S-G 104 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------~~--~-~ 104 (564)
|..+. +.+.+.+.+.+. ||..|+++|. ++|.+ +.++++++.++||||||.++...+++ .. . +
T Consensus 31 F~~l~-l~~~ll~~l~~~-----gf~~pt~IQ~~~IP~~--l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~a 102 (513)
T COG0513 31 FASLG-LSPELLQALKDL-----GFEEPTPIQLAAIPLI--LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSA 102 (513)
T ss_pred HhhcC-CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCce
Confidence 44444 789999999999 9999999999 99999 67999999999999999997443332 11 2 8
Q ss_pred EEEccHHHHHHHHHHHHHhc-----CCeeEEEeCcccccc------CCCceEEEccee-cc-------ccCcccEEEEcc
Q 008489 105 IYCGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREEV------DGAKHRAVTVEM-AD-------VVSDYDCAVIDE 165 (564)
Q Consensus 105 li~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~~------~~~~~i~~T~e~-~~-------~l~~~~~vViDE 165 (564)
+|++|||+||.|+++.+..+ ++.+..++|+..... .+..++|+||.. ++ .+.++.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 99999999999999998853 466778888754321 258899999943 33 358899999999
Q ss_pred ccccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCCceEEEeecccC--CCCC-------------C
Q 008489 166 IQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLS--PLVP-------------L 227 (564)
Q Consensus 166 aH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~~--~~~~-------------~ 227 (564)
|+++.+. ||. ...++-.++.....++.+.+..+.+..+... ..+...+....... .... .
T Consensus 183 ADrmLd~--Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k 260 (513)
T COG0513 183 ADRMLDM--GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEK 260 (513)
T ss_pred HhhhhcC--CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHH
Confidence 9999987 665 4455555555444555544444445555533 22222222210010 1110 1
Q ss_pred Cccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccc
Q 008489 228 NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (564)
Q Consensus 228 ~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gl 305 (564)
...+ ..+.....+.+|||+ ++..++.++..|...+. .+..+||+|++++|..+++.|++ |+.+||||||++++||
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVaTDvaaRGi 337 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLPQEERDRALEKFKD--GELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCCHHHHHHHHHHHHc--CCCCEEEEechhhccC
Confidence 1111 122233455688888 89999999999999886 89999999999999999999999 9999999999999999
Q ss_pred ccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 306 dip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
||| |++||+||. |.+...|+||+||+||.|.. |.++.|...
T Consensus 338 Di~~v~~VinyD~---------p~~~e~yvHRiGRTgRaG~~---G~ai~fv~~ 379 (513)
T COG0513 338 DIPDVSHVINYDL---------PLDPEDYVHRIGRTGRAGRK---GVAISFVTE 379 (513)
T ss_pred CccccceeEEccC---------CCCHHHheeccCccccCCCC---CeEEEEeCc
Confidence 998 999999999 66999999999999999988 999988764
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.5e-37 Score=334.80 Aligned_cols=299 Identities=19% Similarity=0.218 Sum_probs=219.6
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li 106 (564)
|..+ .|++.+.+++.+. ||..|+++|+ ++|.+ +++++++++||||||||+++...+++ .+++||
T Consensus 8 f~~l-~L~~~ll~al~~~-----G~~~ptpiQ~~ai~~l--l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LI 79 (629)
T PRK11634 8 FADL-GLKAPILEALNDL-----GYEKPSPIQAECIPHL--LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILV 79 (629)
T ss_pred Hhhc-CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEE
Confidence 4444 3889999999999 9999999999 99998 56999999999999999997554432 246899
Q ss_pred EccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc------cCCCceEEEcceec-c-------ccCcccEEEEcccc
Q 008489 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~-~-------~l~~~~~vViDEaH 167 (564)
++|||+||.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+ + .++++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 999999999999988753 67777777765322 23678999999544 2 25889999999999
Q ss_pred ccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCCceEEEeecccCCCC------------CCCccc-
Q 008489 168 MLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLSPLV------------PLNVPL- 231 (564)
Q Consensus 168 ~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~~~~~------------~~~~~l- 231 (564)
++.+. |+. +..++-.++.....++.+.+..+.+..+... ..+...+.......... .+...+
T Consensus 160 ~ml~~--gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRM--GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhc--ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHH
Confidence 99865 543 3444444444433333333333344444432 22222221111100000 001111
Q ss_pred cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-c
Q 008489 232 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 232 ~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v 309 (564)
..+.......+|||+ ++..+..++..|...+. .+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+| |
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~-~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILVATdv~arGIDip~V 314 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDMNQALREQTLERLKD--GRLDILIATDVAARGLDVERI 314 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC-CEEEeeCCCCHHHHHHHHHHHhC--CCCCEEEEcchHhcCCCcccC
Confidence 112222345567766 89999999999998876 89999999999999999999999 9999999999999999998 9
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
++||+++. |.+..+|+||+|||||.|.. |.++.+...
T Consensus 315 ~~VI~~d~---------P~~~e~yvqRiGRtGRaGr~---G~ai~~v~~ 351 (629)
T PRK11634 315 SLVVNYDI---------PMDSESYVHRIGRTGRAGRA---GRALLFVEN 351 (629)
T ss_pred CEEEEeCC---------CCCHHHHHHHhccccCCCCc---ceEEEEech
Confidence 99999999 66999999999999999987 888888654
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-36 Score=324.58 Aligned_cols=298 Identities=17% Similarity=0.127 Sum_probs=217.9
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c----------CCCE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S----------SSSG 104 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~----------~~~~ 104 (564)
.+++.+.+++.+. |+..++++|. ++|.+ ++|+++++.+|||||||++++..++ + ..++
T Consensus 93 ~l~~~l~~~l~~~-----g~~~~~~iQ~~ai~~~--~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 93 NLAPELMHAIHDL-----GFPYCTPIQAQVLGYT--LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 3899999999998 9999999999 99998 5699999999999999999754433 2 2468
Q ss_pred EEEccHHHHHHHHHHHHHhc----CCeeEEEeCcccc-------ccCCCceEEEcceecc--------ccCcccEEEEcc
Q 008489 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDE 165 (564)
Q Consensus 105 li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~-------~~~~~~~i~~T~e~~~--------~l~~~~~vViDE 165 (564)
+|++||++||.|+++.++.+ |+.+..++|+... ......++++||+++. .++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999988854 6778888886321 1235689999997652 368899999999
Q ss_pred ccccCCCCCcchHHHHHhccCc-cceEEEccCCCc-hHHHHHHH-HcCCceEEEeecccCCCCC------------CCcc
Q 008489 166 IQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV-PLIQQILQ-VTGDDVKVQSYERLSPLVP------------LNVP 230 (564)
Q Consensus 166 aH~~~~~~rg~~~~~~ll~l~~-~~~~l~~~~~~~-~~~~~l~~-~~g~~~~v~~~~~~~~~~~------------~~~~ 230 (564)
+|.+.+......+..++-.+.. ...+++..+++. ..+..+.. +......+........... ....
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL 325 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence 9999864222224444433332 122334433443 33333333 3333222211110000000 0011
Q ss_pred ccc-cccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 231 LGS-FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 231 l~~-l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
+.. +.+...+.+|||+ ++++++.+++.|.+.+. .+..+||+++.++|.++++.|++ |+++||||||++++|||||
T Consensus 326 l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 326 LYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVPQHKRIKTLEGFRE--GKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCccc
Confidence 111 1222334677777 89999999999988776 89999999999999999999999 9999999999999999997
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++||+++. |.|..+|+||+|||||.|.+ |.++.+..++
T Consensus 403 ~v~~VI~~~~---------P~s~~~y~Qr~GRaGR~g~~---g~~i~~~~~~ 442 (475)
T PRK01297 403 GISHVINFTL---------PEDPDDYVHRIGRTGRAGAS---GVSISFAGED 442 (475)
T ss_pred CCCEEEEeCC---------CCCHHHHHHhhCccCCCCCC---ceEEEEecHH
Confidence 999999999 66999999999999999987 9888887655
No 29
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.4e-36 Score=335.72 Aligned_cols=324 Identities=21% Similarity=0.252 Sum_probs=242.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----H-cCCCEEEEccHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----E-SSSSGIYCGPLRLLA 114 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~-~~~~~li~~P~r~La 114 (564)
+++.+.+.+++. |+..|+++|. +++... .+++++++++|||||||+++..++ . .++++||++|+++|+
T Consensus 8 l~~~~~~~l~~~-----g~~~l~~~Q~~ai~~~~-~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKER-----GIEELYPPQAEALKSGV-LEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHH-hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 789999999999 9999999999 888622 568999999999999999984433 3 356899999999999
Q ss_pred HHHHHHHHh---cCCeeEEEeCccccc---cCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHH
Q 008489 115 WEVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTR 180 (564)
Q Consensus 115 ~q~~~~l~~---~g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~ 180 (564)
.|+++++.+ +|+++..++|+.... .....++++||+.++ ++++++++|+||+|++.+..||..+..
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~ 161 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEM 161 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHH
Confidence 999988874 589999999976432 235689999997764 357899999999999998888888776
Q ss_pred HHhccCccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCCC----------Cccc--------ccccc-c-cCC
Q 008489 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------NVPL--------GSFSN-I-QTG 240 (564)
Q Consensus 181 ~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~----------~~~l--------~~l~~-~-~~g 240 (564)
++..+. ...++++.+++.++...+..|.+... +....++.++... .... ..+.+ + ..+
T Consensus 162 il~~l~-~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 239 (720)
T PRK00254 162 ILTHML-GRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGK 239 (720)
T ss_pred HHHhcC-cCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCC
Confidence 665443 45788888899888888888877533 1122233332100 0000 00000 1 245
Q ss_pred CeEEEc-cHHHHHHHHHHHHHc--------------------------------CCCeEEEEcCCCCHHHHHHHHHHHhC
Q 008489 241 DCIVTF-SRHAIYRLKKAIESR--------------------------------GKHLCSIVYGSLPPETRTRQATRFND 287 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~--------------------------------~~~~v~~lhg~l~~~~R~~~~~~F~~ 287 (564)
.++||+ |++.++.++..|.+. -..+|++|||+|++++|..+++.|++
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 566666 898888777655321 11259999999999999999999999
Q ss_pred CCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC--HHHHHh
Q 008489 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED--LPLLHK 365 (564)
Q Consensus 288 ~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~--~~~~~~ 365 (564)
|.++|||||+++++|+|+|...||+.+...|++....+.+..+|.||+|||||.|.+ ..|.++.+...+ .+.+++
T Consensus 320 --G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 320 --GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYD-EVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred --CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcC-CCceEEEEecCcchHHHHHH
Confidence 999999999999999999966677777777776566677899999999999998753 448888776533 245666
Q ss_pred hhCCCChhhh
Q 008489 366 SLLEPSPMLE 375 (564)
Q Consensus 366 ~~~~~~~ei~ 375 (564)
++...++.+.
T Consensus 397 ~~~~~pe~l~ 406 (720)
T PRK00254 397 YIFGKPEKLF 406 (720)
T ss_pred HHhCCchhhh
Confidence 6665554443
No 30
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=335.69 Aligned_cols=323 Identities=24% Similarity=0.329 Sum_probs=247.8
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc--cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEEccHHH
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT--WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRL 112 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~--~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~-~~~~li~~P~r~ 112 (564)
.+++.+.+.++.. ++.++.++|+ .++.+ .+++|+++++|||||||..|+.++ .+ +++++|++|+|+
T Consensus 15 ~~~~~v~~i~~~~-----~~~el~~~qq~av~~~~--~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGD-----GIDELFNPQQEAVEKGL--LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccC-----ChHHhhHHHHHHhhccc--cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHH
Confidence 3788889999988 8888888888 55555 348999999999999999985554 34 369999999999
Q ss_pred HHHHHHHHHH---hcCCeeEEEeCccccc---cCCCceEEEcceeccc--------cCcccEEEEccccccCCCCCcchH
Q 008489 113 LAWEVAKRLN---KANVSCDLITGQEREE---VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSF 178 (564)
Q Consensus 113 La~q~~~~l~---~~g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~~--------l~~~~~vViDEaH~~~~~~rg~~~ 178 (564)
||.|.++.++ .+|++|+..||+.... ..+..++|+|+|.++. ...+++|||||+|.+.+..||+..
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 9999999988 6799999999987743 3588999999999874 468999999999999998899987
Q ss_pred HHHHhccCc--cceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCCC-------------Cc---------ccc-c
Q 008489 179 TRALLGICA--NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL-------------NV---------PLG-S 233 (564)
Q Consensus 179 ~~~ll~l~~--~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~-------------~~---------~l~-~ 233 (564)
..++-.+.. ..++++|.++++++..+++.|.+.... ....++.++... .+ .+. .
T Consensus 168 E~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v 246 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELV 246 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHH
Confidence 665544433 238999999999999999999887654 222233332111 00 000 0
Q ss_pred cccc-cCCCeEEEc-cHHHHHHHHHHHHHc------------------------------------CCCeEEEEcCCCCH
Q 008489 234 FSNI-QTGDCIVTF-SRHAIYRLKKAIESR------------------------------------GKHLCSIVYGSLPP 275 (564)
Q Consensus 234 l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~------------------------------------~~~~v~~lhg~l~~ 275 (564)
+..+ ..|.++||. ||+.+...++.+... -..++++||++|+.
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~ 326 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPR 326 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCH
Confidence 0111 345666666 898888888877731 01258899999999
Q ss_pred HHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCC-ccccccCHhhHHhhhccCCCCCCCCCcEEEEE
Q 008489 276 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG-VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354 (564)
Q Consensus 276 ~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~-~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~ 354 (564)
++|..+++.|+. |.++|||||++++.|+|+|+++||..+...|++ ...++++..+++|++|||||.|-+ +.|..+.
T Consensus 327 ~~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d-~~G~~~i 403 (766)
T COG1204 327 EDRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD-DYGEAII 403 (766)
T ss_pred HHHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC-CCCcEEE
Confidence 999999999999 999999999999999999999999999999993 348899999999999999999975 3444444
Q ss_pred ec--CCCHHHHHhhhCCCChh
Q 008489 355 LD--SEDLPLLHKSLLEPSPM 373 (564)
Q Consensus 355 l~--~~~~~~~~~~~~~~~~e 373 (564)
+. .++..++.+......|+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e 424 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPE 424 (766)
T ss_pred EecCccchhHHHHHhhccCcc
Confidence 43 33334444444444443
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1e-35 Score=331.03 Aligned_cols=304 Identities=18% Similarity=0.181 Sum_probs=220.2
Q ss_pred cHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHH
Q 008489 42 DVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAK 119 (564)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~ 119 (564)
...+...+++. ||+..|++.|. +|+.+ +.++++++++|||+|||+++ +.+|...+.+||++|+++|+.++..
T Consensus 445 ~~~L~~~lk~~----FG~~sFRp~Q~eaI~ai--L~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~ 518 (1195)
T PLN03137 445 TKKLEVNNKKV----FGNHSFRPNQREIINAT--MSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIM 518 (1195)
T ss_pred hHHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 34555555544 79999999999 99998 67999999999999999997 5566677889999999999998888
Q ss_pred HHHhcCCeeEEEeCccccc------------cCCCceEEEcceecc-------c------cCcccEEEEccccccCCCCC
Q 008489 120 RLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMAD-------V------VSDYDCAVIDEIQMLGCKTR 174 (564)
Q Consensus 120 ~l~~~g~~~~~~~G~~~~~------------~~~~~~i~~T~e~~~-------~------l~~~~~vViDEaH~~~~~~r 174 (564)
.+...|+++..+.|..... .....++++|||.+. . ...+++|||||||+++ +|
T Consensus 519 ~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS--qW 596 (1195)
T PLN03137 519 NLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS--QW 596 (1195)
T ss_pred HHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh--hc
Confidence 8888899998888753211 135689999998652 1 1348899999999998 67
Q ss_pred cchHHHH------Hhc-cCccceEEEccCCCchHHHHHHHHcCCc---eEEEeecccCC----CCCCCc---cc-ccccc
Q 008489 175 GFSFTRA------LLG-ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSP----LVPLNV---PL-GSFSN 236 (564)
Q Consensus 175 g~~~~~~------ll~-l~~~~~~l~~~~~~~~~~~~l~~~~g~~---~~v~~~~~~~~----~~~~~~---~l-~~l~~ 236 (564)
|+.+... +.. +....+..+..+++......+....+-. +....+.++.. ...... .+ ..+..
T Consensus 597 GhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~ 676 (1195)
T PLN03137 597 GHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKE 676 (1195)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHh
Confidence 8664322 111 2233344444444444444455544321 11111222110 000000 11 11111
Q ss_pred c-cCCCeEEE-ccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 237 I-QTGDCIVT-FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 237 ~-~~g~~iv~-~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
. ..+..||| .++++++.++..|.+.+. .+..+||+|++++|..+++.|.. |+.+|||||++++||||+| |++||
T Consensus 677 ~~~~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs~eeR~~vqe~F~~--Gei~VLVATdAFGMGIDkPDVR~VI 753 (1195)
T PLN03137 677 NHFDECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDVRFVI 753 (1195)
T ss_pred cccCCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCCHHHHHHHHHHHhc--CCCcEEEEechhhcCCCccCCcEEE
Confidence 1 12334444 499999999999998877 89999999999999999999999 9999999999999999997 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLL 368 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~ 368 (564)
++++ |-|...|+||+|||||.|.. |.|+.++.. |...++.++.
T Consensus 754 Hydl---------PkSiEsYyQriGRAGRDG~~---g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 754 HHSL---------PKSIEGYHQECGRAGRDGQR---SSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EcCC---------CCCHHHHHhhhcccCCCCCC---ceEEEEecHHHHHHHHHHHh
Confidence 9999 55999999999999999987 999998764 4444555554
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-35 Score=313.64 Aligned_cols=302 Identities=16% Similarity=0.161 Sum_probs=217.8
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~l 105 (564)
.++.+. +++.+.+.+.+. |+..|+++|. +++.+ +++++++++||||||||++++.+++. ..+++
T Consensus 29 ~~~~l~-l~~~~~~~l~~~-----~~~~~~~~Q~~ai~~i--~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~l 100 (401)
T PTZ00424 29 SFDALK-LNEDLLRGIYSY-----GFEKPSAIQQRGIKPI--LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQAL 100 (401)
T ss_pred CHhhCC-CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEE
Confidence 344444 888999999888 9999999999 99998 56999999999999999997544432 34689
Q ss_pred EEccHHHHHHHHHHHHHhc----CCeeEEEeCcccc------ccCCCceEEEcceecc--------ccCcccEEEEcccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~------~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH 167 (564)
|++|+++|+.|+.+.+..+ +..+....|+... ...+..++++||+.+. .+.+++++||||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999888754 4566666666432 1235689999996642 36889999999999
Q ss_pred ccCCCCCcchHHHHHhccCccceEEEccCCCchH-HHHHHH-HcCCceEEEeecccCCCCC-------------CCccc-
Q 008489 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPL-IQQILQ-VTGDDVKVQSYERLSPLVP-------------LNVPL- 231 (564)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~-~~~l~~-~~g~~~~v~~~~~~~~~~~-------------~~~~l- 231 (564)
++.+...+..+..++..+. ...++++.+++.+. ...+.. .......+........... ....+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLP-PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHhcchHHHHHHHHhhCC-CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 9985432223344443333 33455555555532 222222 2222221111110000000 00001
Q ss_pred cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-c
Q 008489 232 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 232 ~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v 309 (564)
..+........+||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccCCcCcccC
Confidence 111122344566666 89999999999988765 89999999999999999999999 9999999999999999998 9
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++||+++. |.|..+|+||+|||||.|.. |.|+.+.+++
T Consensus 337 ~~VI~~~~---------p~s~~~y~qr~GRagR~g~~---G~~i~l~~~~ 374 (401)
T PTZ00424 337 SLVINYDL---------PASPENYIHRIGRSGRFGRK---GVAINFVTPD 374 (401)
T ss_pred CEEEEECC---------CCCHHHEeecccccccCCCC---ceEEEEEcHH
Confidence 99999998 66999999999999999987 9999987655
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.9e-35 Score=324.40 Aligned_cols=308 Identities=19% Similarity=0.225 Sum_probs=219.4
Q ss_pred cHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHH
Q 008489 42 DVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAK 119 (564)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~ 119 (564)
+....+.+++. +|+..|++.|+ +++.+ +.++++++++|||||||+++ +.++...+.++|++|+++|+.|+.+
T Consensus 10 ~~~~~~~l~~~----fG~~~~r~~Q~~ai~~i--l~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~ 83 (607)
T PRK11057 10 ESLAKQVLQET----FGYQQFRPGQQEIIDAV--LSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVD 83 (607)
T ss_pred hhHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHH
Confidence 33444555544 69999999999 99988 56999999999999999997 4556677889999999999999999
Q ss_pred HHHhcCCeeEEEeCccccc----------cCCCceEEEcceeccc--------cCcccEEEEccccccCCCCCcchHHHH
Q 008489 120 RLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (564)
Q Consensus 120 ~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~--------l~~~~~vViDEaH~~~~~~rg~~~~~~ 181 (564)
.++..|+.+..+.+..... .....++++||+.+.. ..+++++||||||+++ +||+.+...
T Consensus 84 ~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~--~~G~~fr~~ 161 (607)
T PRK11057 84 QLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS--QWGHDFRPE 161 (607)
T ss_pred HHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc--cccCcccHH
Confidence 9999999988876653221 1245788999976531 2578999999999998 456543211
Q ss_pred ------Hhc-cCccceEEEccCCCchHHHHHHHHcCC---ceEEEeecccCCC---CCCCccc----cccccccCCCeEE
Q 008489 182 ------LLG-ICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSPL---VPLNVPL----GSFSNIQTGDCIV 244 (564)
Q Consensus 182 ------ll~-l~~~~~~l~~~~~~~~~~~~l~~~~g~---~~~v~~~~~~~~~---~~~~~~l----~~l~~~~~g~~iv 244 (564)
+.. ++...+..+..+.+......+....+- ...+..+.++... ......+ ..+.....+..||
T Consensus 162 y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 162 YAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred HHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEE
Confidence 111 222222233333332333334444332 1112222222110 0001111 1222233445566
Q ss_pred Ec-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCC
Q 008489 245 TF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDG 322 (564)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~ 322 (564)
|+ |+++++.+++.|++.+. .+..+||+|++++|..+++.|.+ |+.+|||||+++++|||+| |++||+++.
T Consensus 242 Fc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a~~~GIDip~V~~VI~~d~----- 313 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGI-SAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI----- 313 (607)
T ss_pred EECcHHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEechhhccCCCCCcCEEEEeCC-----
Confidence 66 89999999999998876 89999999999999999999999 9999999999999999998 999999999
Q ss_pred ccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC-CCHHHHHhhhCCCCh
Q 008489 323 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSP 372 (564)
Q Consensus 323 ~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~-~~~~~~~~~~~~~~~ 372 (564)
|.|..+|+||+|||||.|.. |.|+.+++ .+...++.+++...+
T Consensus 314 ----P~s~~~y~Qr~GRaGR~G~~---~~~ill~~~~d~~~~~~~~~~~~~ 357 (607)
T PRK11057 314 ----PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEEKPA 357 (607)
T ss_pred ----CCCHHHHHHHhhhccCCCCC---ceEEEEeCHHHHHHHHHHHhcCCc
Confidence 55999999999999999987 88887765 455566666655443
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=299.75 Aligned_cols=315 Identities=19% Similarity=0.198 Sum_probs=228.6
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-----C-----C--CEEEE
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-----S-----S--SGIYC 107 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-----~-----~--~~li~ 107 (564)
|.+++.+++... ||..+|++|. ++|.+ +++++|++.++||||||++++..+++ + + .++|+
T Consensus 13 L~~~l~~~l~~~-----GF~~mTpVQa~tIPll--l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalII 85 (567)
T KOG0345|consen 13 LSPWLLEALDES-----GFEKMTPVQAATIPLL--LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALII 85 (567)
T ss_pred ccHHHHHHHHhc-----CCcccCHHHHhhhHHH--hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEe
Confidence 779999999999 9999999999 99999 77999999999999999998655542 1 2 36999
Q ss_pred ccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc-------cCCCceEEEcceec-c-------cc--CcccEEEEcc
Q 008489 108 GPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMA-D-------VV--SDYDCAVIDE 165 (564)
Q Consensus 108 ~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~-~-------~l--~~~~~vViDE 165 (564)
.|||+||.|+.+.+..+ .+.|.+++|+.... .++.+++++||..+ + .+ ..++++|+||
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDE 165 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDE 165 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecc
Confidence 99999999999887743 67789999874332 24778999999432 2 13 4899999999
Q ss_pred ccccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCCceEEEeeccc---CCCCCC------------
Q 008489 166 IQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERL---SPLVPL------------ 227 (564)
Q Consensus 166 aH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~---~~~~~~------------ 227 (564)
||.+.|. ||. ...+|-.+++..-.=..+.+...-+.++... ......|..-... .|....
T Consensus 166 ADrLldm--gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 166 ADRLLDM--GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred hHhHhcc--cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999977 665 3455545555433323343344445554433 2222222221111 221111
Q ss_pred CccccccccccCCCeEEEc-cHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccc
Q 008489 228 NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (564)
Q Consensus 228 ~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gl 305 (564)
...+..+.+...+.++||| |-..++.....+... +...+..+||.|+...|..+++.|.+ ..-.+++|||++++|+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~--~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK--LSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh--ccCceEEeehhhhccC
Confidence 1112334455678899999 778888888888765 55679999999999999999999998 5667999999999999
Q ss_pred ccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCC-ChhhhhcC
Q 008489 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPMLESAG 378 (564)
Q Consensus 306 dip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~-~~ei~~~~ 378 (564)
||| |++||++|+ |.+++.+.||+||+||.|.. |.++.|-......|.+++.-. .|++.+.+
T Consensus 322 Dip~iD~VvQ~Dp---------P~~~~~FvHR~GRTaR~gr~---G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 322 DIPGIDLVVQFDP---------PKDPSSFVHRCGRTARAGRE---GNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred CCCCceEEEecCC---------CCChhHHHhhcchhhhccCc---cceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 998 999999999 55999999999999999987 666555332333555555443 56655543
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.4e-36 Score=334.38 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=219.3
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcC--CCEEEEccHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESS--SSGIYCGPLRLL 113 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~--~~~li~~P~r~L 113 (564)
+++.+.+.+++. |+..|+++|. ++|.+ ++++++++.+|||||||+++... +.+. .++||++|||+|
T Consensus 21 l~~~l~~~L~~~-----g~~~p~~~Q~~ai~~i--l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraL 93 (742)
T TIGR03817 21 AHPDVVAALEAA-----GIHRPWQHQARAAELA--HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93 (742)
T ss_pred CCHHHHHHHHHc-----CCCcCCHHHHHHHHHH--HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHH
Confidence 789999999999 9999999999 99999 56999999999999999997443 3332 478999999999
Q ss_pred HHHHHHHHHhc---CCeeEEEeCccccc-----cCCCceEEEcceecc------------ccCcccEEEEccccccCCCC
Q 008489 114 AWEVAKRLNKA---NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCKT 173 (564)
Q Consensus 114 a~q~~~~l~~~---g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~------------~l~~~~~vViDEaH~~~~~~ 173 (564)
|.|+++++.++ ++.+...+|+.... ..+.+++++||+++. .++++++|||||+|.+.+ .
T Consensus 94 a~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~ 172 (742)
T TIGR03817 94 AADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-V 172 (742)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-c
Confidence 99999999876 57788888875432 235788999997753 257899999999999865 3
Q ss_pred CcchHHHHHhcc------CccceEEEccCCCchHHHHHHH-HcCCceEEEeec-cc---------CCC--CC--------
Q 008489 174 RGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYE-RL---------SPL--VP-------- 226 (564)
Q Consensus 174 rg~~~~~~ll~l------~~~~~~l~~~~~~~~~~~~l~~-~~g~~~~v~~~~-~~---------~~~--~~-------- 226 (564)
+|..+..++-.+ .....+++..+++......++. ..+..+.+.... .+ .+. ..
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccccc
Confidence 554433332221 1233456666667765555553 344333221110 00 010 00
Q ss_pred -------CCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcC-------CCeEEEEcCCCCHHHHHHHHHHHhCCCCC
Q 008489 227 -------LNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG-------KHLCSIVYGSLPPETRTRQATRFNDASSE 291 (564)
Q Consensus 227 -------~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~-------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~ 291 (564)
....+..+.+ .....|||+ |++.++.++..+.+.. ..++..+||++++++|.++++.|++ |+
T Consensus 253 r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G~ 329 (742)
T TIGR03817 253 RRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--GE 329 (742)
T ss_pred ccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--CC
Confidence 0000111111 245667776 8999999999887631 2368999999999999999999999 99
Q ss_pred eeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 292 FDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 292 ~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
.++|||||++++||||| +++||+++. |.+.++|+||+|||||.|.. |.++.+..++
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~---------P~s~~~y~qRiGRaGR~G~~---g~ai~v~~~~ 386 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGF---------PGTRASLWQQAGRAGRRGQG---ALVVLVARDD 386 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCC---------CCCHHHHHHhccccCCCCCC---cEEEEEeCCC
Confidence 99999999999999997 999999998 66999999999999999987 8888886543
No 36
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.4e-35 Score=331.56 Aligned_cols=349 Identities=19% Similarity=0.250 Sum_probs=242.7
Q ss_pred ccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c---------CC
Q 008489 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S---------SS 102 (564)
Q Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~---------~~ 102 (564)
.++.+++.+.+++++. +..|+++|+ ++|.+ ++++++++++|||||||+++...++ . ..
T Consensus 14 ~~~~l~~~v~~~~~~~------~~~~tpiQ~~Ai~~i--l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~ 85 (876)
T PRK13767 14 ILDLLRPYVREWFKEK------FGTFTPPQRYAIPLI--HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKV 85 (876)
T ss_pred HHhhcCHHHHHHHHHc------cCCCCHHHHHHHHHH--HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCe
Confidence 4556889999987765 889999999 99998 6699999999999999999754443 1 12
Q ss_pred CEEEEccHHHHHHHHHHHHHh---------------c-CCeeEEEeCcccccc------CCCceEEEcceecc-------
Q 008489 103 SGIYCGPLRLLAWEVAKRLNK---------------A-NVSCDLITGQEREEV------DGAKHRAVTVEMAD------- 153 (564)
Q Consensus 103 ~~li~~P~r~La~q~~~~l~~---------------~-g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~------- 153 (564)
+++|++|+|+|+.|+++++.+ . ++.+...+|+..... ....++++||+.+.
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~ 165 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK 165 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh
Confidence 479999999999999886541 1 567788888764322 35678899997653
Q ss_pred ---ccCcccEEEEccccccCCCCCcchHHHHH---hccCccceEEEccCCCchHHHHHHHHcCC--------ceEEEe--
Q 008489 154 ---VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANELHLCGDPAAVPLIQQILQVTGD--------DVKVQS-- 217 (564)
Q Consensus 154 ---~l~~~~~vViDEaH~~~~~~rg~~~~~~l---l~l~~~~~~l~~~~~~~~~~~~l~~~~g~--------~~~v~~-- 217 (564)
.+.++++|||||+|++.+..||..+...+ ..+.....+.++.+++......+..+.+. .+.+..
T Consensus 166 ~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~ 245 (876)
T PRK13767 166 FREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR 245 (876)
T ss_pred HHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC
Confidence 35789999999999999888887654333 23333556777888888766666665432 122211
Q ss_pred eccc------CCCCCC----Cc----c-cccccc--ccCCCeEEEc-cHHHHHHHHHHHHHcC-----CCeEEEEcCCCC
Q 008489 218 YERL------SPLVPL----NV----P-LGSFSN--IQTGDCIVTF-SRHAIYRLKKAIESRG-----KHLCSIVYGSLP 274 (564)
Q Consensus 218 ~~~~------~~~~~~----~~----~-l~~l~~--~~~g~~iv~~-s~~~~~~l~~~L~~~~-----~~~v~~lhg~l~ 274 (564)
+.+. .+.... .. . ...+.+ ...+.++||+ |++.++.++..|.+.. ...+..+||+|+
T Consensus 246 ~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 246 FVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred CCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 1010 010000 00 0 011111 1245567766 8999999999998732 247999999999
Q ss_pred HHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEE
Q 008489 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353 (564)
Q Consensus 275 ~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~ 353 (564)
+++|..+++.|++ |+.+|||||+++++|||+| +++||+++. |.|.++|+||+|||||.+...+.|.++
T Consensus 326 ~~~R~~ve~~fk~--G~i~vLVaTs~Le~GIDip~Vd~VI~~~~---------P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 326 REVRLEVEEKLKR--GELKVVVSSTSLELGIDIGYIDLVVLLGS---------PKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred HHHHHHHHHHHHc--CCCeEEEECChHHhcCCCCCCcEEEEeCC---------CCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 9999999999999 9999999999999999997 999999998 559999999999999975444669999
Q ss_pred EecCCCHH----HHHhhhCCCChhh--hhcCCCCcHHHHHHHHhhCCCCCHHHHHHHH
Q 008489 354 CLDSEDLP----LLHKSLLEPSPML--ESAGLFPNFDLIYMYSRLHPDSSLYGILEHF 405 (564)
Q Consensus 354 ~l~~~~~~----~~~~~~~~~~~ei--~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f 405 (564)
.....+.. ..+.+.+...+++ ...++.-...++...+.. ......++.+.+
T Consensus 395 ~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~ 451 (876)
T PRK13767 395 VVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIV 451 (876)
T ss_pred EcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 87766532 2233344333322 112222334455554433 345666666533
No 37
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=284.85 Aligned_cols=304 Identities=15% Similarity=0.171 Sum_probs=231.0
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCCC---EEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSS---GIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~~~---~li 106 (564)
|+.+ ++.+++.+.++.. |+..++++|+ ++|.+ +.|++++-+|.||||||+++. +.+.+++. ++|
T Consensus 9 F~~L-Gl~~Wlve~l~~l-----~i~~pTpiQ~~cIpkI--LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalv 80 (442)
T KOG0340|consen 9 FSIL-GLSPWLVEQLKAL-----GIKKPTPIQQACIPKI--LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALV 80 (442)
T ss_pred hhhc-CccHHHHHHHHHh-----cCCCCCchHhhhhHHH--hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEE
Confidence 3444 4899999999999 9999999999 99999 669999999999999999963 44445554 478
Q ss_pred EccHHHHHHHHHHHHHh----cCCeeEEEeCccccc------cCCCceEEEcceecc------------ccCcccEEEEc
Q 008489 107 CGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEMAD------------VVSDYDCAVID 164 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~----~g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~------------~l~~~~~vViD 164 (564)
+.|||+||.|++++|.. ++++|.+++|++... .+..+++++||+.+. .++++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 89999999999999985 478899999986543 346778889985542 24789999999
Q ss_pred cccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHcCC---ceEEEeecc------------cCCCCCCCc
Q 008489 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYER------------LSPLVPLNV 229 (564)
Q Consensus 165 EaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~---~~~v~~~~~------------~~~~~~~~~ 229 (564)
||+.+.+....-.+..+.-.++++..+++.+.+..+.+..+....-. .+.+..+.. ..+....+.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 99999876333334455555677767777776666666665543222 222222211 111111111
Q ss_pred cc----cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccc
Q 008489 230 PL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (564)
Q Consensus 230 ~l----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~G 304 (564)
.+ ....+...+.+++|. +..+|+.++..|+.... ++..+||.|++.+|...+.+|++ +..+||||||++++|
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~-r~~~lHs~m~Q~eR~~aLsrFrs--~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV-RVVSLHSQMPQKERLAALSRFRS--NAARILIATDVASRG 317 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-eeeehhhcchHHHHHHHHHHHhh--cCccEEEEechhhcC
Confidence 11 222333567777777 67899999999988877 89999999999999999999999 999999999999999
Q ss_pred cccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEec-CCCHH
Q 008489 305 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP 361 (564)
Q Consensus 305 ldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~-~~~~~ 361 (564)
+||| |+.|||++. |.++..|+||.||+.|.|.. |..+.+. ..|.+
T Consensus 318 LDIP~V~LVvN~di---------Pr~P~~yiHRvGRtARAGR~---G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 318 LDIPTVELVVNHDI---------PRDPKDYIHRVGRTARAGRK---GMAISIVTQRDVE 364 (442)
T ss_pred CCCCceeEEEecCC---------CCCHHHHHHhhcchhcccCC---cceEEEechhhHH
Confidence 9999 999999999 66999999999999999987 7766553 44443
No 38
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.6e-35 Score=295.18 Aligned_cols=297 Identities=20% Similarity=0.217 Sum_probs=225.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----------------cCCC
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------------SSSS 103 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----------------~~~~ 103 (564)
++..+.+.+.+. ++..++++|. ++|.. ++++++|.+++||||||.+++..|+ +++.
T Consensus 252 ~P~e~l~~I~~~-----~y~eptpIqR~aipl~--lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 252 FPLELLSVIKKP-----GYKEPTPIQRQAIPLG--LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred CCHHHHHHHHhc-----CCCCCchHHHhhccch--hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 788888899999 9999999999 99977 7799999999999999988754442 2357
Q ss_pred EEEEccHHHHHHHHHHHHHhc----CCeeEEEeCcccccc------CCCceEEEcceec-c-------ccCcccEEEEcc
Q 008489 104 GIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREEV------DGAKHRAVTVEMA-D-------VVSDYDCAVIDE 165 (564)
Q Consensus 104 ~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~------~~~~~i~~T~e~~-~-------~l~~~~~vViDE 165 (564)
++++.|||+||.|+.+.-.++ |+.+..+.|+..... .++.++++||.-+ + .++.+.++|+||
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvlde 404 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDE 404 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccc
Confidence 899999999999998876654 777777778655433 4788999999433 3 358899999999
Q ss_pred ccccCCCCCcchHHHHHhccCcc-------------------------ceEEEccCCCchHHHHHHHH-cCCceEEEee-
Q 008489 166 IQMLGCKTRGFSFTRALLGICAN-------------------------ELHLCGDPAAVPLIQQILQV-TGDDVKVQSY- 218 (564)
Q Consensus 166 aH~~~~~~rg~~~~~~ll~l~~~-------------------------~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~- 218 (564)
|+++.|........++|-.++.. .+.++.+.+..+-+..++.. .-+...+..-
T Consensus 405 adrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~ 484 (673)
T KOG0333|consen 405 ADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGS 484 (673)
T ss_pred hhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEecc
Confidence 99999885445566666554421 12334444444556666643 2233333321
Q ss_pred -cccCCCC-----------CCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHH
Q 008489 219 -ERLSPLV-----------PLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285 (564)
Q Consensus 219 -~~~~~~~-----------~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F 285 (564)
.+..+.- ...+.+..+.+.....+|||. +++.|+.+++.|++.+. .++.+||+-++++|...+..|
T Consensus 485 ~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~qeQRe~aL~~f 563 (673)
T KOG0333|consen 485 AGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKSQEQRENALADF 563 (673)
T ss_pred CCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCccHHHHHHHHHHH
Confidence 1222210 001111223333233445544 89999999999999996 999999999999999999999
Q ss_pred hCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 286 NDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 286 ~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+. |..+|+||||++++||||| |.+||+|++.| |...|.||+||+||.|.. |.++.|++.+
T Consensus 564 r~--~t~dIlVaTDvAgRGIDIpnVSlVinydmak---------sieDYtHRIGRTgRAGk~---GtaiSflt~~ 624 (673)
T KOG0333|consen 564 RE--GTGDILVATDVAGRGIDIPNVSLVINYDMAK---------SIEDYTHRIGRTGRAGKS---GTAISFLTPA 624 (673)
T ss_pred Hh--cCCCEEEEecccccCCCCCccceeeecchhh---------hHHHHHHHhccccccccC---ceeEEEeccc
Confidence 99 8889999999999999997 99999999977 999999999999999998 9998887654
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.2e-34 Score=318.02 Aligned_cols=297 Identities=21% Similarity=0.206 Sum_probs=218.3
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
||+..|++.|+ +++.+ +.++++++++|||+|||+++ +.++...+.++|++|+++|+.|+++.++.+|+.+..++|.
T Consensus 9 fg~~~fr~~Q~~~i~~i--l~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~ 86 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHV--LDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNST 86 (591)
T ss_pred cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 69999999999 99998 56999999999999999997 4556677889999999999999999999999999888775
Q ss_pred cccc----------cCCCceEEEcceeccc--------cCcccEEEEccccccCCCCCcchHHHH-------HhccCccc
Q 008489 135 EREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA-------LLGICANE 189 (564)
Q Consensus 135 ~~~~----------~~~~~~i~~T~e~~~~--------l~~~~~vViDEaH~~~~~~rg~~~~~~-------ll~l~~~~ 189 (564)
.... .....++++||+.+.. ..+++++||||||+++ +||+.+... .-.++...
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~--~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS--QWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc--cccCccHHHHHHHHHHHHhCCCCC
Confidence 3221 1246788999977532 3679999999999998 567654321 11222333
Q ss_pred eEEEccCCCchHHHHHHHHcCC---ceEEEeecccCCC------CCCCccc-cccccccCCCeEEEc-cHHHHHHHHHHH
Q 008489 190 LHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSPL------VPLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAI 258 (564)
Q Consensus 190 ~~l~~~~~~~~~~~~l~~~~g~---~~~v~~~~~~~~~------~~~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L 258 (564)
+..+..+++......+..+.+- ...+..+.++... ......+ ..+.....+..|||+ |+++++.+++.|
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERL 244 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 3334444444444455555432 1122222222110 0001111 222222344556655 899999999999
Q ss_pred HHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhh
Q 008489 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIA 337 (564)
Q Consensus 259 ~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~ 337 (564)
...+. .+..+||+|++++|..+++.|.+ |+.+|||||+++++|||+| |++||+++. |.|..+|.|++
T Consensus 245 ~~~g~-~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlVaT~a~~~GID~p~v~~VI~~~~---------p~s~~~y~Q~~ 312 (591)
T TIGR01389 245 ESQGI-SALAYHAGLSNKVRAENQEDFLY--DDVKVMVATNAFGMGIDKPNVRFVIHYDM---------PGNLESYYQEA 312 (591)
T ss_pred HhCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCcCCCCCEEEEcCC---------CCCHHHHhhhh
Confidence 88776 89999999999999999999999 8999999999999999998 999999999 55999999999
Q ss_pred ccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCCCCh
Q 008489 338 GRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSP 372 (564)
Q Consensus 338 GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~~~~ 372 (564)
|||||.|.. |.|+.+++. +...++.+++...|
T Consensus 313 GRaGR~G~~---~~~il~~~~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 313 GRAGRDGLP---AEAILLYSPADIALLKRRIEQSEA 345 (591)
T ss_pred ccccCCCCC---ceEEEecCHHHHHHHHHHHhccCC
Confidence 999999976 888777654 44566666665444
No 40
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=297.35 Aligned_cols=310 Identities=20% Similarity=0.232 Sum_probs=233.2
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C------CC
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S------SS 103 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----~------~~ 103 (564)
|.++. |...+..++... ||..|+++|. .||.+ +-+++++.+|.||||||.++...+++ . -+
T Consensus 183 F~~mN-LSRPlLka~~~l-----Gy~~PTpIQ~a~IPva--llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TR 254 (691)
T KOG0338|consen 183 FQSMN-LSRPLLKACSTL-----GYKKPTPIQVATIPVA--LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATR 254 (691)
T ss_pred HHhcc-cchHHHHHHHhc-----CCCCCCchhhhcccHH--hhcchhhheecccCCchhhhHHHHHHHHhcCcccCccee
Confidence 44444 666778888888 9999999999 99999 55999999999999999997554443 1 26
Q ss_pred EEEEccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEccee-ccc--------cCcccEEEEc
Q 008489 104 GIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEM-ADV--------VSDYDCAVID 164 (564)
Q Consensus 104 ~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~-~~~--------l~~~~~vViD 164 (564)
+||++|||+||.|++...+++ .+.|++..|+-.-. ...+.|+++||.. .++ +.++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 799999999999998877653 78899998864322 2378899999943 343 5889999999
Q ss_pred cccccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHHc-CCceEEEee-------------cccCCCCC--
Q 008489 165 EIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSY-------------ERLSPLVP-- 226 (564)
Q Consensus 165 EaH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~-g~~~~v~~~-------------~~~~~~~~-- 226 (564)
||+.|++. ||+ +..++-.++.....+..+.+..+.+..++... ...+.+... -|..|-..
T Consensus 335 EADRMLee--gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~d 412 (691)
T KOG0338|consen 335 EADRMLEE--GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGD 412 (691)
T ss_pred hHHHHHHH--HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccc
Confidence 99999976 665 45666666677777777777777787777543 222222111 01111000
Q ss_pred CCccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccc
Q 008489 227 LNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (564)
Q Consensus 227 ~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~G 304 (564)
....+ ..+.+.-...++||+ +++.++.+.=.|--.|. ++.-+||+|++++|.+.++.|++ ++++||||||++++|
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl-~agElHGsLtQ~QRlesL~kFk~--~eidvLiaTDvAsRG 489 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL-KAGELHGSLTQEQRLESLEKFKK--EEIDVLIATDVASRG 489 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc-hhhhhcccccHHHHHHHHHHHHh--ccCCEEEEechhhcc
Confidence 11111 112223345677777 89999999777766655 89999999999999999999999 999999999999999
Q ss_pred cccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-HHHHHhhhCC
Q 008489 305 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLE 369 (564)
Q Consensus 305 ldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-~~~~~~~~~~ 369 (564)
+||+ |..||||.+ |.+...|+||+||+.|.|.. |..+.|..++ ...++.....
T Consensus 490 LDI~gV~tVINy~m---------P~t~e~Y~HRVGRTARAGRa---GrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 490 LDIEGVQTVINYAM---------PKTIEHYLHRVGRTARAGRA---GRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CCccceeEEEeccC---------chhHHHHHHHhhhhhhcccC---cceEEEeccccHHHHHHHHhh
Confidence 9996 999999999 66999999999999999998 9988886654 3444444443
No 41
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=297.84 Aligned_cols=332 Identities=19% Similarity=0.186 Sum_probs=245.9
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcC------C-CEEEEc
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESS------S-SGIYCG 108 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~------~-~~li~~ 108 (564)
|+....+.++.. +|..++.+|+ .||.+ +.|++|+-.|-||||||++++-. |... | -+|||.
T Consensus 76 ls~~t~kgLke~-----~fv~~teiQ~~~Ip~a--L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 76 LSQKTLKGLKEA-----KFVKMTEIQRDTIPMA--LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred CchHHHHhHhhc-----CCccHHHHHHhhcchh--ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 566777888888 9999999999 99999 78999999999999999997544 4332 2 358999
Q ss_pred cHHHHHHHHHHHHHhc----CCeeEEEeCcccc-----ccCCCceEEEccee-ccc--------cCcccEEEEccccccC
Q 008489 109 PLRLLAWEVAKRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEM-ADV--------VSDYDCAVIDEIQMLG 170 (564)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~G~~~~-----~~~~~~~i~~T~e~-~~~--------l~~~~~vViDEaH~~~ 170 (564)
|||+||.|+++.+++. +..+|++.|+... .....+|+||||.. +.+ ..++.++|+|||+.+.
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~L 228 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRML 228 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHH
Confidence 9999999999999964 5788898887532 23478999999943 322 3778999999999999
Q ss_pred CCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHHcC-CceEEEee--------------cccCCCCCCCccc-c
Q 008489 171 CKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKVQSY--------------ERLSPLVPLNVPL-G 232 (564)
Q Consensus 171 ~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g-~~~~v~~~--------------~~~~~~~~~~~~l-~ 232 (564)
|+ ||. +..++-.++.....+..+.+....+.+++...- +...|..+ +...++..+...+ .
T Consensus 229 DM--GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 229 DM--GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HH--hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 87 665 567777888888888888877778888876532 22222222 1122222222233 2
Q ss_pred ccccccCCCeEEEc-cHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-c
Q 008489 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 233 ~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v 309 (564)
.+..+.+...|||+ |-+++.-++..+.+. .+..+..+||.|++..|.++...|.. ..--||+|||++++|+|+| |
T Consensus 307 FI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 307 FIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCccc
Confidence 33445567788888 688999999888775 34479999999999999999999998 6778999999999999999 9
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEe-cCCC-HHHHHhhhCCCChh----hhhcCCCCcH
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSED-LPLLHKSLLEPSPM----LESAGLFPNF 383 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l-~~~~-~~~~~~~~~~~~~e----i~~~~l~~~~ 383 (564)
++||.+|. |...++|+||+||+.|.+.. |.++.+ .+.+ ...+..+-...+|. |....+...-
T Consensus 385 dwViQ~DC---------Pedv~tYIHRvGRtAR~~~~---G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~ 452 (758)
T KOG0343|consen 385 DWVIQVDC---------PEDVDTYIHRVGRTARYKER---GESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIR 452 (758)
T ss_pred ceEEEecC---------chhHHHHHHHhhhhhcccCC---CceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHH
Confidence 99999998 77999999999999999987 776655 3333 33444333333331 1122334455
Q ss_pred HHHHHHHhhCCC
Q 008489 384 DLIYMYSRLHPD 395 (564)
Q Consensus 384 ~~l~~~~~~~~~ 395 (564)
.+|+++....|+
T Consensus 453 ~~l~~ll~~~~e 464 (758)
T KOG0343|consen 453 NKLEALLAKDPE 464 (758)
T ss_pred HHHHHHHhhCHH
Confidence 566665555544
No 42
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=309.75 Aligned_cols=347 Identities=20% Similarity=0.241 Sum_probs=256.4
Q ss_pred ccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCC--------C
Q 008489 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS--------S 103 (564)
Q Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~--------~ 103 (564)
.+..+++.++++++.. +.+||++|. ++|.+ .+|++++++||||||||.+|+.++ .+.+ .
T Consensus 4 ~~~~l~~~v~~~~~~~------~~~~t~~Q~~a~~~i--~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~ 75 (814)
T COG1201 4 IFNILDPRVREWFKRK------FTSLTPPQRYAIPEI--HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIY 75 (814)
T ss_pred hhhhcCHHHHHHHHHh------cCCCCHHHHHHHHHH--hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceE
Confidence 4567899999999988 999999999 99999 579999999999999999975443 3331 3
Q ss_pred EEEEccHHHHHHHHHHHHH----hcCCeeEEEeCcccccc-----C-CCceEEEcceecc----------ccCcccEEEE
Q 008489 104 GIYCGPLRLLAWEVAKRLN----KANVSCDLITGQEREEV-----D-GAKHRAVTVEMAD----------VVSDYDCAVI 163 (564)
Q Consensus 104 ~li~~P~r~La~q~~~~l~----~~g~~~~~~~G~~~~~~-----~-~~~~i~~T~e~~~----------~l~~~~~vVi 163 (564)
++|+.|.|+|++++.+++. .+|+++.+.+|+..... . ...|++.|||.+. .+.++.+|||
T Consensus 76 ~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 76 ALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 6999999999999999988 46999999999875432 2 3456678887763 3689999999
Q ss_pred ccccccCCCCCcchHHHHHhccC--ccceEEEccCCCchHHHHHHHHcCCc---eEEEeecccCC--------CCC---C
Q 008489 164 DEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSP--------LVP---L 227 (564)
Q Consensus 164 DEaH~~~~~~rg~~~~~~ll~l~--~~~~~l~~~~~~~~~~~~l~~~~g~~---~~v~~~~~~~~--------~~~---~ 227 (564)
||+|++.++.||..+.-.|..+. +.+++-+|.++++.....+.++.+.. +.+....-..+ ... .
T Consensus 156 DEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 156 DEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD 235 (814)
T ss_pred ehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc
Confidence 99999999999988764443222 22788899999998777777775542 34433211111 111 0
Q ss_pred ----Cccccc---cccccCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccc
Q 008489 228 ----NVPLGS---FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (564)
Q Consensus 228 ----~~~l~~---l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~ 300 (564)
...+.. +.+.+....||.+||..++.++..|.+.....+..|||+++.+.|...++.|++ |+.+++|||+.
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lravV~TSS 313 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKAVVATSS 313 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceEEEEccc
Confidence 001111 122233334444599999999999999886689999999999999999999999 99999999999
Q ss_pred cccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH----HHHHhhhCCCC--hh
Q 008489 301 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL----PLLHKSLLEPS--PM 373 (564)
Q Consensus 301 ~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~----~~~~~~~~~~~--~e 373 (564)
+|-|||+. |+.||+++. |.+.+.+.||+||+|+.-..-+.|+++.....|+ ...+.+.+... ++
T Consensus 314 LELGIDiG~vdlVIq~~S---------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~ 384 (814)
T COG1201 314 LELGIDIGDIDLVIQLGS---------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIK 384 (814)
T ss_pred hhhccccCCceEEEEeCC---------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCC
Confidence 99999995 999999988 5599999999999997665457799988875552 22333333332 34
Q ss_pred hhhcCCCCcHHHHHHHHhhCCCCCHHHHHH
Q 008489 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILE 403 (564)
Q Consensus 374 i~~~~l~~~~~~l~~~~~~~~~~~~~~~l~ 403 (564)
+.+.+|.-...++...+... .....++.+
T Consensus 385 i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~ 413 (814)
T COG1201 385 IPKNPLDVLAQQIVGMALEK-VWEVEEAYR 413 (814)
T ss_pred CCCcchhHHHHHHHHHHhhC-cCCHHHHHH
Confidence 45566666666666554443 344544444
No 43
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=289.17 Aligned_cols=304 Identities=18% Similarity=0.168 Sum_probs=229.0
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcC------C-CEEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS------S-SGIYC 107 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~------~-~~li~ 107 (564)
.|++....+++.+ ||..+|++|+ .+|.+ +.++++++.|-||||||++++ +.+... + .++||
T Consensus 88 ~LS~~t~kAi~~~-----GF~~MT~VQ~~ti~pl--l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 88 SLSPLTLKAIKEM-----GFETMTPVQQKTIPPL--LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred ccCHHHHHHHHhc-----CccchhHHHHhhcCcc--CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 5888999999999 9999999999 99998 779999999999999999963 334332 2 35888
Q ss_pred ccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc------cCCCceEEEcce-ecccc--------CcccEEEEcccc
Q 008489 108 GPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVE-MADVV--------SDYDCAVIDEIQ 167 (564)
Q Consensus 108 ~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~------~~~~~~i~~T~e-~~~~l--------~~~~~vViDEaH 167 (564)
+|||+||.|++..++++ ++.++++.|+.... ..+.+++++||. ..|++ ...+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 99999999999888853 78899999976543 347899999994 44544 556789999999
Q ss_pred ccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCC-ceEEEeecccC--------------CCCCCCc
Q 008489 168 MLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGD-DVKVQSYERLS--------------PLVPLNV 229 (564)
Q Consensus 168 ~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~-~~~v~~~~~~~--------------~~~~~~~ 229 (564)
++.+. ||. +..++-.++.....++.+.+..+-+++++.. ... ...+.....-. +......
T Consensus 241 rlLd~--GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 241 RLLDI--GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred hhhhc--ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99976 665 5666766777777888887777777777643 222 22222111111 1111101
Q ss_pred cc-cccccc-cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccc
Q 008489 230 PL-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (564)
Q Consensus 230 ~l-~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gld 306 (564)
.+ ..+++. ....++||| |-..+.-++..|+.. ...|.-+||+.++..|..+...|.+ .+.-||||||++++|+|
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~-dlpv~eiHgk~~Q~kRT~~~~~F~k--aesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI-DLPVLEIHGKQKQNKRTSTFFEFCK--AESGILVCTDVAARGLD 395 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc-CCchhhhhcCCcccccchHHHHHhh--cccceEEecchhhccCC
Confidence 11 222332 337788888 567777777777744 4489999999999999999999999 77789999999999999
Q ss_pred cC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEe-cCCCHHHHHhhh
Q 008489 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSL 367 (564)
Q Consensus 307 ip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l-~~~~~~~~~~~~ 367 (564)
+| |++||+++. |-.+.+|+||+||+||.|.. |..+.+ .+.+..+++.+-
T Consensus 396 ~P~V~~VvQ~~~---------P~d~~~YIHRvGRTaR~gk~---G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 396 IPDVDWVVQYDP---------PSDPEQYIHRVGRTAREGKE---GKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCceEEEEeCC---------CCCHHHHHHHhccccccCCC---ceEEEEeChhHHHHHHHHh
Confidence 98 999999999 66999999999999998876 776555 555555554443
No 44
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-34 Score=269.27 Aligned_cols=302 Identities=16% Similarity=0.181 Sum_probs=219.4
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHH---cCCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLE---SSSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~---~~~~~li 106 (564)
|+++. |.+.+...+... ||..|+.+|+ ++|.+ +++++|+.++..|+|||..+ ++.+- +.-++++
T Consensus 29 F~~Mg-l~edlLrgiY~y-----GfekPS~IQqrAi~~I--lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 29 FDDMG-LKEDLLRGIYAY-----GFEKPSAIQQRAIPQI--LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred hhhcC-chHHHHHHHHHh-----ccCCchHHHhhhhhhh--hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 44444 788888888888 9999999999 99999 77999999999999999885 33332 1236899
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccc-----c-ccCCCceEEEcce-eccc-------cCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQER-----E-EVDGAKHRAVTVE-MADV-------VSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~-----~-~~~~~~~i~~T~e-~~~~-------l~~~~~vViDEaH~ 168 (564)
+.|||+||.|+-+.+..+ ++.|....|+.. + ...+..++..||. .++. .+.+.++|+||+++
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 999999999999998865 677777777654 2 2236667778883 3332 37899999999999
Q ss_pred cCCCCCcchHHHHHhccCcc-ceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCC-------------CCCccccc-
Q 008489 169 LGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-------------PLNVPLGS- 233 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~-~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~-------------~~~~~l~~- 233 (564)
+.+...+-..-+++-.++.. .+.+++.+-+.+..+-.-....+.+.+-......+++ .+...+..
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdL 260 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 260 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHH
Confidence 99762333345666666643 3333333333333333333333432221111111111 01111111
Q ss_pred cccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 234 FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 234 l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
+..+.-..+++|+ |++.+..+.+.+++... .|...||+|++++|.+++..|+. |+.+||++||+-++|+|+| |..
T Consensus 261 Yd~LtItQavIFcnTk~kVdwLtekm~~~nf-tVssmHGDm~qkERd~im~dFRs--g~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 261 YDTLTITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMEQKERDKIMNDFRS--GKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred hhhhehheEEEEecccchhhHHHHHHHhhCc-eeeeccCCcchhHHHHHHHHhhc--CCceEEEEechhhccCCcceeEE
Confidence 1222334566666 89999999999988766 89999999999999999999999 9999999999999999998 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
||+||+ |.....|+||+||+||+|.. |.++.|...+
T Consensus 338 viNYDL---------P~nre~YIHRIGRSGRFGRk---GvainFVk~~ 373 (400)
T KOG0328|consen 338 VINYDL---------PNNRELYIHRIGRSGRFGRK---GVAINFVKSD 373 (400)
T ss_pred EEecCC---------CccHHHHhhhhccccccCCc---ceEEEEecHH
Confidence 999999 67899999999999999998 9999886543
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-33 Score=296.44 Aligned_cols=297 Identities=20% Similarity=0.223 Sum_probs=228.8
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
||+.++++.|+ .|..+ +.++++++..|||+|||+++ +.+++..|-+||+.|..+|...+.+.+...|+.+..+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~--l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~ 90 (590)
T COG0514 13 FGYASFRPGQQEIIDAL--LSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNST 90 (590)
T ss_pred hCccccCCCHHHHHHHH--HcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcc
Confidence 68999999999 88888 66999999999999999998 7778889999999999999999999999999998877665
Q ss_pred ccccc----------CCCceEEEcceeccc--------cCcccEEEEccccccCCCCCcchHHH-------HHhccCccc
Q 008489 135 EREEV----------DGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR-------ALLGICANE 189 (564)
Q Consensus 135 ~~~~~----------~~~~~i~~T~e~~~~--------l~~~~~vViDEaH~~~~~~rg~~~~~-------~ll~l~~~~ 189 (564)
-.... ..-.+++.+||.+.. ..++.++||||||+++ +||+.|.. ..-+++..+
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~~p 168 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPNPP 168 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCCCC
Confidence 32221 135788999987632 3678999999999999 88988632 223344334
Q ss_pred eEEEccCCCchHHHHHHHHcCC---ceEEEeecccCCCC---CC---Cccccccc---cccCC-CeEEEccHHHHHHHHH
Q 008489 190 LHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSPLV---PL---NVPLGSFS---NIQTG-DCIVTFSRHAIYRLKK 256 (564)
Q Consensus 190 ~~l~~~~~~~~~~~~l~~~~g~---~~~v~~~~~~~~~~---~~---~~~l~~l~---~~~~g-~~iv~~s~~~~~~l~~ 256 (564)
+.-+..+++.....++....+- ...+..+.|++-.- .. ...+..+. ....+ .+|.|.||+.++.+++
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 4445556666666666665543 23344454443211 00 01111222 22233 4666669999999999
Q ss_pred HHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHh
Q 008489 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (564)
Q Consensus 257 ~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Q 335 (564)
.|...+. .+..+||+|+.++|..+.+.|.. ++.+|+|||.++|||||-| |++||+++. |-|.++|.|
T Consensus 249 ~L~~~g~-~a~~YHaGl~~~eR~~~q~~f~~--~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------P~s~EsYyQ 316 (590)
T COG0514 249 WLRKNGI-SAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGMGIDKPDVRFVIHYDL---------PGSIESYYQ 316 (590)
T ss_pred HHHHCCC-ceEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccCccCCCCceEEEEecC---------CCCHHHHHH
Confidence 9999966 89999999999999999999999 9999999999999999997 999999999 669999999
Q ss_pred hhccCCCCCCCCCcEEEEEecC-CCHHHHHhhhCCCCh
Q 008489 336 IAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSP 372 (564)
Q Consensus 336 r~GRaGR~g~~~~~G~~~~l~~-~~~~~~~~~~~~~~~ 372 (564)
-+|||||.|.. ..|+.+++ .|....+.+++...|
T Consensus 317 E~GRAGRDG~~---a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 317 ETGRAGRDGLP---AEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred HHhhccCCCCc---ceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999987 88888876 565555666665543
No 46
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=290.01 Aligned_cols=306 Identities=23% Similarity=0.229 Sum_probs=246.5
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHc-CCCEEEEccHHHH
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES-SSSGIYCGPLRLL 113 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~-~~~~li~~P~r~L 113 (564)
++++.++..++.. |+..+.++|. ++..- .++|+|.+|+++|+||||++. ++.++. +++.+|++|+.+|
T Consensus 200 dipe~fk~~lk~~-----G~~eLlPVQ~laVe~G-LLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 200 DIPEKFKRMLKRE-----GIEELLPVQVLAVEAG-LLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred CCcHHHHHHHHhc-----Ccceecchhhhhhhhc-cccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 5899999999999 9999999999 66543 368999999999999999995 444555 7789999999999
Q ss_pred HHHHHHHHH----hcCCeeEEEeCcccc----------ccCCCceEEEcceeccc-------cCcccEEEEccccccCCC
Q 008489 114 AWEVAKRLN----KANVSCDLITGQERE----------EVDGAKHRAVTVEMADV-------VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 114 a~q~~~~l~----~~g~~~~~~~G~~~~----------~~~~~~~i~~T~e~~~~-------l~~~~~vViDEaH~~~~~ 172 (564)
|+|-++.|. ++|+.+.+-+|-.+. ...++.|++.|+|-.|. +.+++.|||||+|++.|.
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 999999887 468888887774322 23478899999976654 588999999999999999
Q ss_pred CCcchHHHHHhc--cCccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCCC----------Ccccccc------
Q 008489 173 TRGFSFTRALLG--ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------NVPLGSF------ 234 (564)
Q Consensus 173 ~rg~~~~~~ll~--l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~----------~~~l~~l------ 234 (564)
+||+.+.-++-. .....-++++.++++.+...+++..|-.... ...|+.|++.- ...+..+
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~-y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVL-YDERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEe-ecCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 999986544322 2233567888899999999999998875543 33567776432 1111111
Q ss_pred ---ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc
Q 008489 235 ---SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310 (564)
Q Consensus 235 ---~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~ 310 (564)
..-..|+.|||. ||+.|+.++..|...|. ++.++|++||..+|+.+...|.+ +++.++|+|.+++.|+|+|..
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~-~a~pYHaGL~y~eRk~vE~~F~~--q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGL-KAAPYHAGLPYKERKSVERAFAA--QELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCCc-ccccccCCCcHHHHHHHHHHHhc--CCcceEeehhhhhcCCCCchH
Confidence 111356777776 99999999999998876 89999999999999999999999 999999999999999999999
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~ 360 (564)
.|||-.+.+ ...|+|+.+|.|+.|||||.+- ++.|.||.+.....
T Consensus 510 QVIFEsLaM----G~~WLs~~EF~QM~GRAGRp~y-HdrGkVyllvepg~ 554 (830)
T COG1202 510 QVIFESLAM----GIEWLSVREFQQMLGRAGRPDY-HDRGKVYLLVEPGK 554 (830)
T ss_pred HHHHHHHHc----ccccCCHHHHHHHhcccCCCCc-ccCceEEEEecCCh
Confidence 999877644 3569999999999999999986 57799999976553
No 47
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=274.20 Aligned_cols=326 Identities=17% Similarity=0.205 Sum_probs=235.9
Q ss_pred CchhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------
Q 008489 30 NSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS------- 101 (564)
Q Consensus 30 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~------- 101 (564)
.+...|..+. |.|.+.+.+..+ +|..|+.+|+ ++|.+.....++.|.++..|+|||.++...++..
T Consensus 87 yS~ksFeeL~-LkPellkgly~M-----~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~ 160 (477)
T KOG0332|consen 87 YSAKSFEELR-LKPELLKGLYAM-----KFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV 160 (477)
T ss_pred cccccHHhhC-CCHHHHhHHHHh-----ccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC
Confidence 3444555665 677888888878 9999999999 9999988889999999999999999987666543
Q ss_pred CCEEEEccHHHHHHHHHHHHHhcCCeeEE----EeCcc---ccccCCCceEEEcceec-cc--------cCcccEEEEcc
Q 008489 102 SSGIYCGPLRLLAWEVAKRLNKANVSCDL----ITGQE---REEVDGAKHRAVTVEMA-DV--------VSDYDCAVIDE 165 (564)
Q Consensus 102 ~~~li~~P~r~La~q~~~~l~~~g~~~~~----~~G~~---~~~~~~~~~i~~T~e~~-~~--------l~~~~~vViDE 165 (564)
+.+++++|+|+||.|+.+.+.++|..+++ ...+. +...-...|++.||..+ ++ +.++.++|+||
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDE 240 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDE 240 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecc
Confidence 57789999999999999999988765532 22222 11222567889998543 32 47899999999
Q ss_pred ccccCCCCCcchH--HHHHhccCccceEEEccCCCchHHHHHHHHcCCce-------------EEEeecccCCCCCC-Cc
Q 008489 166 IQMLGCKTRGFSF--TRALLGICANELHLCGDPAAVPLIQQILQVTGDDV-------------KVQSYERLSPLVPL-NV 229 (564)
Q Consensus 166 aH~~~~~~rg~~~--~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~-------------~v~~~~~~~~~~~~-~~ 229 (564)
|+.+.+ ++|+.- .++...++.....+..+.+..+-+..++...-..- .+..++..++-+.. ..
T Consensus 241 AD~Mi~-tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 241 ADVMID-TQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred hhhhhh-cccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH
Confidence 999977 566552 33344444444445555555555666654332211 11222222221111 11
Q ss_pred cc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc
Q 008489 230 PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (564)
Q Consensus 230 ~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi 307 (564)
.+ ..+.-..-|..|||+ +++.+..++..+...|. .|..+||.|.-++|..+++.|+. |..+|||+||++++|||+
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTVEQRAAIIDRFRE--GKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchhHHHHHHHHHHhc--CcceEEEEechhhccccc
Confidence 11 111122456677777 99999999999999988 99999999999999999999999 999999999999999999
Q ss_pred C-ccEEEecCcc-ccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-----HHHHHhhhCCCCh
Q 008489 308 N-ISRIIFSTMK-KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-----LPLLHKSLLEPSP 372 (564)
Q Consensus 308 p-v~~VI~~~~~-k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-----~~~~~~~~~~~~~ 372 (564)
+ |..||+|+++ +|+|. -+.+.|+||+||+||+|.. |.++.+.+++ +..++++++..+.
T Consensus 397 ~qVs~VvNydlP~~~~~~----pD~etYlHRiGRtGRFGkk---G~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGE----PDYETYLHRIGRTGRFGKK---GLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred ceEEEEEecCCccccCCC----CCHHHHHHHhccccccccc---ceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 7 9999999976 46653 4789999999999999998 9999886543 2344444444433
No 48
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=302.15 Aligned_cols=311 Identities=23% Similarity=0.321 Sum_probs=247.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc--------------CCCEEEEccHHHHHHHHHHHH
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSGIYCGPLRLLAWEVAKRL 121 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~--------------~~~~li~~P~r~La~q~~~~l 121 (564)
|++..++.+|. .||.+.. .+.|.+|+||||||||-.|+..+++ +-++||++|+++||.++++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~-SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYK-SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhc-CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 47899999999 9999974 7889999999999999998655542 236899999999999999887
Q ss_pred H----hcCCeeEEEeCccccc---cCCCceEEEcceeccc-----------cCcccEEEEccccccCCCCCcchHHHHHh
Q 008489 122 N----KANVSCDLITGQEREE---VDGAKHRAVTVEMADV-----------VSDYDCAVIDEIQMLGCKTRGFSFTRALL 183 (564)
Q Consensus 122 ~----~~g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~~-----------l~~~~~vViDEaH~~~~~~rg~~~~~~ll 183 (564)
. .+|+.|..+||+..-. ..++++++.|||.+|. .+.+.+|||||+|.+.| +||.....++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVa 263 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVA 263 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHH
Confidence 7 3599999999987543 3478999999999875 37799999999999987 79998755442
Q ss_pred ------ccCccceEEEccCCCchHHHHHHHHcCC-----ceEEEeecccCCCCCCCccc---------c---------cc
Q 008489 184 ------GICANELHLCGDPAAVPLIQQILQVTGD-----DVKVQSYERLSPLVPLNVPL---------G---------SF 234 (564)
Q Consensus 184 ------~l~~~~~~l~~~~~~~~~~~~l~~~~g~-----~~~v~~~~~~~~~~~~~~~l---------~---------~l 234 (564)
......++++|.+++++++.+++.+.+- -+.+...+|+.|+.....-. . ..
T Consensus 264 Rtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 3445678999999999999999988765 34556667787775421110 0 01
Q ss_pred ccccCCC-eEEEc-cHHHHHHHHHHHHHcC----------------------CCeEEEEcCCCCHHHHHHHHHHHhCCCC
Q 008489 235 SNIQTGD-CIVTF-SRHAIYRLKKAIESRG----------------------KHLCSIVYGSLPPETRTRQATRFNDASS 290 (564)
Q Consensus 235 ~~~~~g~-~iv~~-s~~~~~~l~~~L~~~~----------------------~~~v~~lhg~l~~~~R~~~~~~F~~~~g 290 (564)
..+..|. ++||+ +|.+..+.++.|.+.. ..+.+++|+||..++|..+.+.|.. |
T Consensus 344 e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G 421 (1230)
T KOG0952|consen 344 EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--G 421 (1230)
T ss_pred HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--C
Confidence 1123444 44555 8888888887776531 1358899999999999999999999 9
Q ss_pred CeeEEEeccccccccccCccEEEecCccccCCcc--ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-HHHHHhhh
Q 008489 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSL 367 (564)
Q Consensus 291 ~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~--~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-~~~~~~~~ 367 (564)
.++|++||..++.|+|+|...||..+...||... ....+..+..|+.|||||.+-+ ..|..+.+.+.| +.+|..++
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd-~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD-SSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC-CCceEEEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999875 7778999999999999998864 447776665554 58888888
Q ss_pred CCCCh
Q 008489 368 LEPSP 372 (564)
Q Consensus 368 ~~~~~ 372 (564)
....|
T Consensus 501 ~~~~p 505 (1230)
T KOG0952|consen 501 TGQNP 505 (1230)
T ss_pred cCCCh
Confidence 88776
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=286.15 Aligned_cols=298 Identities=17% Similarity=0.172 Sum_probs=223.0
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-------------
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS------------- 101 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~------------- 101 (564)
.+.+.+...++.. ++..++++|+ ++|.+ .+|++++++|+||||||.+++..+. +.
T Consensus 80 ~l~~~l~~ni~~~-----~~~~ptpvQk~sip~i--~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 80 ILGEALAGNIKRS-----GYTKPTPVQKYSIPII--SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred chhHHHhhccccc-----cccCCCcceeecccee--ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 4677788888888 9999999999 99999 6699999999999999999854443 21
Q ss_pred CCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCcccc------ccCCCceEEEcceecc--------ccCcccEEEE
Q 008489 102 SSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVI 163 (564)
Q Consensus 102 ~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~------~~~~~~~i~~T~e~~~--------~l~~~~~vVi 163 (564)
+++++++|||+||.|++++.+++ ++.+...+|+... ...+..++++|+..+. .|.++.++||
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 46799999999999999999865 5667777776322 2347889999995542 2688999999
Q ss_pred ccccccCC-CCCcchHHHHHhccCc----cceEEEccCCCchHHHHHHHHcCC-ceEEEeeccc--------------CC
Q 008489 164 DEIQMLGC-KTRGFSFTRALLGICA----NELHLCGDPAAVPLIQQILQVTGD-DVKVQSYERL--------------SP 223 (564)
Q Consensus 164 DEaH~~~~-~~rg~~~~~~ll~l~~----~~~~l~~~~~~~~~~~~l~~~~g~-~~~v~~~~~~--------------~~ 223 (564)
|||+.|.| ..++.....++....- ....++.+++....+..++...-. .|......+. ..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999998 7667666666654422 234445555444444444432221 1222111111 01
Q ss_pred CCCCCccccccccc----cCC-----CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee
Q 008489 224 LVPLNVPLGSFSNI----QTG-----DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (564)
Q Consensus 224 ~~~~~~~l~~l~~~----~~g-----~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ 293 (564)
.....+.+..+... ..+ ..+||+ +++.+..++..|...+. .+..+||..++.+|.+.++.|++ |...
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~-~~~sIhg~~tq~er~~al~~Fr~--g~~p 389 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY-PAKSIHGDRTQIEREQALNDFRN--GKAP 389 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC-CceeecchhhhhHHHHHHHHhhc--CCcc
Confidence 11111122222211 123 467777 89999999999998887 89999999999999999999999 9999
Q ss_pred EEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 294 VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 294 VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|+|||+++++|+||| |++||+|++ |-...+|+||+||+||.|.. |.++.|..+.
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDm---------P~d~d~YvHRIGRTGR~Gn~---G~atsf~n~~ 444 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDM---------PADIDDYVHRIGRTGRVGNG---GRATSFFNEK 444 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeec---------CcchhhHHHhccccccCCCC---ceeEEEeccc
Confidence 999999999999997 999999999 55899999999999999998 9999987744
No 50
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=269.03 Aligned_cols=295 Identities=18% Similarity=0.160 Sum_probs=228.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~-------~~~li~~P~r~ 112 (564)
|...+...+.+. |+..|+++|+ .+|.+ +.|++++.-|..|+|||-++.-.+++. -++++++|+|+
T Consensus 92 Lkr~LLmgIfe~-----G~ekPSPiQeesIPia--LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 92 LKRELLMGIFEK-----GFEKPSPIQEESIPIA--LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred hhHHHHHHHHHh-----ccCCCCCcccccccee--ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 566777777777 9999999999 99999 789999999999999999974444432 25799999999
Q ss_pred HHHHHHHHHHh----cCCeeEEEeCcccccc------CCCceEEEcc-eeccc-------cCcccEEEEccccccCCCCC
Q 008489 113 LAWEVAKRLNK----ANVSCDLITGQEREEV------DGAKHRAVTV-EMADV-------VSDYDCAVIDEIQMLGCKTR 174 (564)
Q Consensus 113 La~q~~~~l~~----~g~~~~~~~G~~~~~~------~~~~~i~~T~-e~~~~-------l~~~~~vViDEaH~~~~~~r 174 (564)
||.|+.+.+.+ .|+.+.+.+|+..-.. +...++++|| +++++ +++..++|+|||+.+.+.+.
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence 99998877764 4888888999765432 3456678888 44543 68899999999999998878
Q ss_pred cchHHHHHhccCccceEEEccCCCchHHHHHHH-HcCCceEEEee-----------cccCCCCCCCccccc-cccccCCC
Q 008489 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSY-----------ERLSPLVPLNVPLGS-FSNIQTGD 241 (564)
Q Consensus 175 g~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~-~~g~~~~v~~~-----------~~~~~~~~~~~~l~~-l~~~~~g~ 241 (564)
+...+.++.-+++....+..+.+..-.++.+.. .....+.+.-. |.......+...+.. +.++.-..
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQ 324 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQ 324 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccc
Confidence 888888888888776666655444334444443 23334443322 222222222222222 23344455
Q ss_pred eEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc
Q 008489 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (564)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k 319 (564)
+|+|+ |.+.++-+++.+.+.|. .+..+|+.|-++.|..++..|++ |.++.|||||.+.+|||++ |.+||++|.+|
T Consensus 325 sIIFCNS~~rVELLAkKITelGy-scyyiHakM~Q~hRNrVFHdFr~--G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 325 SIIFCNSTNRVELLAKKITELGY-SCYYIHAKMAQEHRNRVFHDFRN--GKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred eEEEeccchHhHHHHHHHHhccc-hhhHHHHHHHHhhhhhhhhhhhc--cccceeeehhhhhcccccceeeEEEecCCCC
Confidence 66666 89999999999999988 89999999999999999999999 9999999999999999997 99999999965
Q ss_pred cCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 320 ~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
+.++|.||+||+||+|.- |.++.+.+
T Consensus 402 ---------~aEtYLHRIGRsGRFGhl---GlAInLit 427 (459)
T KOG0326|consen 402 ---------NAETYLHRIGRSGRFGHL---GLAINLIT 427 (459)
T ss_pred ---------CHHHHHHHccCCccCCCc---ceEEEEEe
Confidence 999999999999999987 98887743
No 51
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=278.20 Aligned_cols=311 Identities=18% Similarity=0.166 Sum_probs=207.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------CCCEEE
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SSSGIY 106 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------------~~~~li 106 (564)
|++.+...++.. .++..||.+|. +||.+ +++++++|.++||||||++++..+.+ +.-++|
T Consensus 143 L~~~lv~~L~~~----m~i~~pTsVQkq~IP~l--L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 143 LHPHLVSHLNTK----MKISAPTSVQKQAIPVL--LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred CCHHHHHHHHHH----hccCccchHhhcchhhh--hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 788887777655 48999999999 99999 66999999999999999998655532 124699
Q ss_pred EccHHHHHHHHHHHHHhcC------CeeEEEeCcccccc------CCCceEEEcce-eccc--------cCcccEEEEcc
Q 008489 107 CGPLRLLAWEVAKRLNKAN------VSCDLITGQEREEV------DGAKHRAVTVE-MADV--------VSDYDCAVIDE 165 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~g------~~~~~~~G~~~~~~------~~~~~i~~T~e-~~~~--------l~~~~~vViDE 165 (564)
++|||+||.|+|+.+.++- +++ ++.|++.+.. .+.+|++.||. .+|. .+++.++|+||
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg-~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPG-VLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeec-eeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 9999999999999999762 233 3445554433 37889999994 4444 37799999999
Q ss_pred ccccCCCCCcchHHHHHhccCc-------------cceEEEccCCCchHHHHHHHHc-CCceEEEe--------------
Q 008489 166 IQMLGCKTRGFSFTRALLGICA-------------NELHLCGDPAAVPLIQQILQVT-GDDVKVQS-------------- 217 (564)
Q Consensus 166 aH~~~~~~rg~~~~~~ll~l~~-------------~~~~l~~~~~~~~~~~~l~~~~-g~~~~v~~-------------- 217 (564)
++.+.+...+-..+.++-.+-. ..+++.-+.+..+-+.++.... .+.+.+..
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9999977444445555533311 0112222222223333333221 11111110
Q ss_pred --------------ec---------ccCCCCCC----Cccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHc-------
Q 008489 218 --------------YE---------RLSPLVPL----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESR------- 261 (564)
Q Consensus 218 --------------~~---------~~~~~~~~----~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~------- 261 (564)
+. ...|.... ...+ ...........|||| +.+.++--+..+.+.
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 00 00000000 0000 111112344678888 466666555555432
Q ss_pred --------------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCcccc
Q 008489 262 --------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (564)
Q Consensus 262 --------------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~ 326 (564)
-..++.-+||+|++++|..++..|.. ...-||+|||++++|+|+| |+.||.|+.
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~~vVQYd~--------- 524 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVGLVVQYDP--------- 524 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcCeEEEeCC---------
Confidence 12358899999999999999999998 7777999999999999998 999999999
Q ss_pred ccCHhhHHhhhccCCCCCCCCCcEEEEEe-cCCCHHHHHhhhCCCChh
Q 008489 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLLEPSPM 373 (564)
Q Consensus 327 p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l-~~~~~~~~~~~~~~~~~e 373 (564)
|.+.++|+||+||+.|.|.. |..+.+ .+.+.+ |.+.+....+.
T Consensus 525 P~s~adylHRvGRTARaG~k---G~alLfL~P~Eae-y~~~l~~~~~~ 568 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEK---GEALLFLLPSEAE-YVNYLKKHHIM 568 (708)
T ss_pred CCCHHHHHHHhhhhhhccCC---CceEEEecccHHH-HHHHHHhhcch
Confidence 77999999999999999987 665444 444444 44455444443
No 52
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=292.25 Aligned_cols=309 Identities=22% Similarity=0.294 Sum_probs=244.7
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccc
Q 008489 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~ 136 (564)
+-++|. ++..+ -++..|+|.|.|.+|||.+| .+.|.+..++||..|-++|.+|-|+.+.+.=-.||+.||+-.
T Consensus 130 LDpFQ~~aI~Ci--dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVT 207 (1041)
T KOG0948|consen 130 LDPFQSTAIKCI--DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVT 207 (1041)
T ss_pred cCchHhhhhhhh--cCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeeccee
Confidence 455666 66666 45899999999999999996 455667789999999999999999999865568999999987
Q ss_pred cccCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHH
Q 008489 137 EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (564)
Q Consensus 137 ~~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~ 208 (564)
.. +++.-+++|+|++. .++.+..||+||+|.|-|.+||..|...++-+ .+.++++..++++++..+++.|
T Consensus 208 In-P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll-P~~vr~VFLSATiPNA~qFAeW 285 (1041)
T KOG0948|consen 208 IN-PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL-PDNVRFVFLSATIPNARQFAEW 285 (1041)
T ss_pred eC-CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec-cccceEEEEeccCCCHHHHHHH
Confidence 65 46777888988764 35889999999999999999999998877654 4668889999999999999988
Q ss_pred cCC----c-eEEEeecccCCCCCCCcc------------------------cccccc---------------------cc
Q 008489 209 TGD----D-VKVQSYERLSPLVPLNVP------------------------LGSFSN---------------------IQ 238 (564)
Q Consensus 209 ~g~----~-~~v~~~~~~~~~~~~~~~------------------------l~~l~~---------------------~~ 238 (564)
... . ..|...+|++|+.....+ ...+.+ ..
T Consensus 286 I~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~ 365 (1041)
T KOG0948|consen 286 ICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKG 365 (1041)
T ss_pred HHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCC
Confidence 532 2 234445677776322000 000000 00
Q ss_pred CC-----------------C-eEEEccHHHHHHHHHHHHHc--------------------------------------C
Q 008489 239 TG-----------------D-CIVTFSRHAIYRLKKAIESR--------------------------------------G 262 (564)
Q Consensus 239 ~g-----------------~-~iv~~s~~~~~~l~~~L~~~--------------------------------------~ 262 (564)
+| - +++.||+++|+..+-.+.+. .
T Consensus 366 ~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 366 PGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred CCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 01 1 33445999999887666542 1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCC
Q 008489 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (564)
Q Consensus 263 ~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR 342 (564)
..++++|||||-|--+..++-.|.+ |-+|+|+||-++++|+|.|++.|+|....||||...+|+|.-+|+|+.|||||
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqE--GLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGR 523 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQE--GLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGR 523 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhc--cHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccc
Confidence 2369999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEecCCCH--HHHHhhhCCCChhhhhc
Q 008489 343 YGSKFPVGEVTCLDSEDL--PLLHKSLLEPSPMLESA 377 (564)
Q Consensus 343 ~g~~~~~G~~~~l~~~~~--~~~~~~~~~~~~ei~~~ 377 (564)
.|.+ ..|+|+.+.++.+ ...+.++......+..+
T Consensus 524 RG~D-drGivIlmiDekm~~~~ak~m~kG~aD~LnSa 559 (1041)
T KOG0948|consen 524 RGID-DRGIVILMIDEKMEPQVAKDMLKGSADPLNSA 559 (1041)
T ss_pred cCCC-CCceEEEEecCcCCHHHHHHHhcCCCcchhhh
Confidence 9985 7899999988775 56667888777665543
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.98 E-value=3.8e-31 Score=306.26 Aligned_cols=309 Identities=20% Similarity=0.237 Sum_probs=209.0
Q ss_pred EEccCCccHHHHHHHH----HHc-------------CCCEEEEccHHHHHHHHHHHHHh----------------cCCee
Q 008489 82 HVGPTNSGKTHQALSR----LES-------------SSSGIYCGPLRLLAWEVAKRLNK----------------ANVSC 128 (564)
Q Consensus 82 v~apTGsGKT~~~~~~----l~~-------------~~~~li~~P~r~La~q~~~~l~~----------------~g~~~ 128 (564)
|++|||||||+++... +.. +.++||++|+|+|+.|+.++++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999997443 322 23679999999999999998752 36788
Q ss_pred EEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHH---hccCccce
Q 008489 129 DLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANEL 190 (564)
Q Consensus 129 ~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~l---l~l~~~~~ 190 (564)
+..+|+..... ....|+++|||.+. .++++++|||||+|++.+..||..+...+ ..+.....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 89999864332 35688899997653 35889999999999999878897754333 23344567
Q ss_pred EEEccCCCchHHHHHHHHcCCc--eEEEee--cccC------CCCCCC------------------cc----c--ccccc
Q 008489 191 HLCGDPAAVPLIQQILQVTGDD--VKVQSY--ERLS------PLVPLN------------------VP----L--GSFSN 236 (564)
Q Consensus 191 ~l~~~~~~~~~~~~l~~~~g~~--~~v~~~--~~~~------~~~~~~------------------~~----l--~~l~~ 236 (564)
++++.++++...+.+.++.+.. +.+... .+.. +..... .. + ..+..
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 8888889998888888877532 222110 0000 100000 00 0 00111
Q ss_pred -ccCCCeEEEc-cHHHHHHHHHHHHHcCC--------------------------------CeEEEEcCCCCHHHHHHHH
Q 008489 237 -IQTGDCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQA 282 (564)
Q Consensus 237 -~~~g~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~lhg~l~~~~R~~~~ 282 (564)
...+.+|||+ |++.++.++..|++... ..+..|||+|++++|..++
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 1345566666 89999999999876421 1267899999999999999
Q ss_pred HHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH-
Q 008489 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL- 360 (564)
Q Consensus 283 ~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~- 360 (564)
+.|++ |+.++||||+.+++||||+ |+.||+++. |.|.++|+||+|||||...+.+.|.++.....++
T Consensus 321 ~~fK~--G~LrvLVATssLELGIDIg~VDlVIq~gs---------P~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dll 389 (1490)
T PRK09751 321 QALKS--GELRCVVATSSLELGIDMGAVDLVIQVAT---------PLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLV 389 (1490)
T ss_pred HHHHh--CCceEEEeCcHHHccCCcccCCEEEEeCC---------CCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHH
Confidence 99999 9999999999999999997 999999998 6699999999999999743233455444433332
Q ss_pred ---HHHHhhhCCCChhhhhcCCCC---cHHHHHHHHhhCCCCCHHHHHH
Q 008489 361 ---PLLHKSLLEPSPMLESAGLFP---NFDLIYMYSRLHPDSSLYGILE 403 (564)
Q Consensus 361 ---~~~~~~~~~~~~ei~~~~l~~---~~~~l~~~~~~~~~~~~~~~l~ 403 (564)
..++.+++...+++. ....| ...|+...+.. ......++.+
T Consensus 390 e~~~~ve~~l~g~iE~~~-~p~nplDVLaqqiva~a~~-~~~~~d~l~~ 436 (1490)
T PRK09751 390 DSAVIVECMFAGRLENLT-PPHNPLDVLAQQTVAAAAM-DALQVDEWYS 436 (1490)
T ss_pred hhHHHHHHHhcCCCCccC-CCCChHHHHHHHHHHHHhc-CCCCHHHHHH
Confidence 124456666555432 22222 23444444432 3344555554
No 54
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.7e-31 Score=263.37 Aligned_cols=295 Identities=20% Similarity=0.224 Sum_probs=227.8
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------------CCCEEEE
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------SSSGIYC 107 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------------~~~~li~ 107 (564)
.+..|..++.+. .+..++++|. ++|.+ +.+++|+-+|-||||||-+++...+- ++-++|+
T Consensus 230 fDkqLm~airk~-----Ey~kptpiq~qalpta--lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 230 FDKQLMTAIRKS-----EYEKPTPIQCQALPTA--LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chHHHHHHHhhh-----hcccCCcccccccccc--cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 577777777777 8999999999 99999 77999999999999999998655431 2346999
Q ss_pred ccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceec-c-------ccCcccEEEEcccccc
Q 008489 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQML 169 (564)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~-~-------~l~~~~~vViDEaH~~ 169 (564)
+|||+||.|++...+++ |+.+..++|+.... ..++.++||||+.+ + .+.+++++|+||++.|
T Consensus 303 vPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred eccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 99999999998877754 78888888865432 24788999999543 2 3689999999999999
Q ss_pred CCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHH-HHcCCceEEEeecccCCCCCC----------Cccc----c
Q 008489 170 GCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLSPLVPL----------NVPL----G 232 (564)
Q Consensus 170 ~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~-~~~g~~~~v~~~~~~~~~~~~----------~~~l----~ 232 (564)
.+. ||. ...+.-.+..+...++.+.+....++.++ ..+++.+.+..-..-..-+.. ...+ .
T Consensus 383 fdm--Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~ 460 (731)
T KOG0339|consen 383 FDM--GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLR 460 (731)
T ss_pred hcc--ccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHH
Confidence 977 654 34444456667777777776666666665 345555444332111110000 1111 2
Q ss_pred cccc-ccCCCeEEEcc-HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-c
Q 008489 233 SFSN-IQTGDCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 233 ~l~~-~~~g~~iv~~s-~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v 309 (564)
.|.. ...|++|+|.| +..+++++..|...+. .|..+||++.+.+|.+.+..|+. +...|+||||++.+|+||| +
T Consensus 461 ~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-~v~llhgdkdqa~rn~~ls~fKk--k~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 461 HLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-NVSLLHGDKDQAERNEVLSKFKK--KRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HhhhhccCCcEEEEEeccCCHHHHHHHhccccc-eeeeecCchhhHHHHHHHHHHhh--cCCceEEEeeHhhcCCCcccc
Confidence 2222 35788999997 6788999999977776 99999999999999999999999 8889999999999999997 9
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+.||++|..+ +...+.||+||+||.|.. |..|.+.++.
T Consensus 538 kTVvnyD~ar---------dIdththrigrtgRag~k---GvayTlvTeK 575 (731)
T KOG0339|consen 538 KTVVNYDFAR---------DIDTHTHRIGRTGRAGEK---GVAYTLVTEK 575 (731)
T ss_pred ceeecccccc---------hhHHHHHHhhhccccccc---ceeeEEechh
Confidence 9999999955 999999999999999987 9999997654
No 55
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=258.23 Aligned_cols=298 Identities=17% Similarity=0.157 Sum_probs=221.3
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------------cCCCEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGI 105 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------------~~~~~l 105 (564)
.-.+.+.+.+++. ||..|+++|. +.|.+ ++|++++.++.||+|||++++..-. .+..++
T Consensus 226 q~~pevmenIkK~-----GFqKPtPIqSQaWPI~--LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~l 298 (629)
T KOG0336|consen 226 QCYPEVMENIKKT-----GFQKPTPIQSQAWPIL--LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVL 298 (629)
T ss_pred hhhHHHHHHHHhc-----cCCCCCcchhccccee--ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceE
Confidence 3567888889999 9999999999 99999 7899999999999999999743211 123578
Q ss_pred EEccHHHHHHHHHHHHHhc---CCeeEEEeCcccccc------CCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA---NVSCDLITGQEREEV------DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~---g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
++.|||+||.|+.-...++ |.....+.|+-.+.. .+..++++||..+. .+..+.++|+|||+.
T Consensus 299 vl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr 378 (629)
T KOG0336|consen 299 VLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR 378 (629)
T ss_pred EEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhh
Confidence 9999999999998777754 666556666544332 37789999996653 258899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHc-CCceEEE----------eecccCCCCCC---Cccccc-
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQ----------SYERLSPLVPL---NVPLGS- 233 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~-g~~~~v~----------~~~~~~~~~~~---~~~l~~- 233 (564)
|+|........++|+.+......++.+.+-.+-+..+.... .+...+. ......-.... ...+..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f 458 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFF 458 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHH
Confidence 99986666788999999888887777766656666666432 2211111 00000000000 111111
Q ss_pred cccccCC-CeEEEcc-HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 234 FSNIQTG-DCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 234 l~~~~~g-~~iv~~s-~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
+.+..+. ++|+|++ +-.+..+...+.-.+. ..-.+||+-++.+|+..++.|+. |+++||||||++.+|+|+| |.
T Consensus 459 ~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi-~~q~lHG~r~Q~DrE~al~~~ks--G~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 459 VANMSSNDKVIIFVSRKVMADHLSSDFCLKGI-SSQSLHGNREQSDREMALEDFKS--GEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHhcCCCceEEEEEechhhhhhccchhhhccc-chhhccCChhhhhHHHHHHhhhc--CceEEEEEechhhcCCCchhcc
Confidence 1223333 4566665 5667777777766665 78899999999999999999999 9999999999999999996 99
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEec-CCC
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SED 359 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~-~~~ 359 (564)
+|++||. |....+|+||+||+||.|.. |..+.+. .+|
T Consensus 536 HV~NyDF---------P~nIeeYVHRvGrtGRaGr~---G~sis~lt~~D 573 (629)
T KOG0336|consen 536 HVYNYDF---------PRNIEEYVHRVGRTGRAGRT---GTSISFLTRND 573 (629)
T ss_pred eeeccCC---------CccHHHHHHHhcccccCCCC---cceEEEEehhh
Confidence 9999999 66999999999999999987 7766553 344
No 56
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=271.13 Aligned_cols=303 Identities=20% Similarity=0.178 Sum_probs=217.8
Q ss_pred CCchhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCC-ceEEEEccCCccHHHHHHHHHHc------
Q 008489 29 LNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLES------ 100 (564)
Q Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~-~~viv~apTGsGKT~~~~~~l~~------ 100 (564)
..+..++..| .++..+.++++.. ||..|+++|. .+|.+ +.+ .+++-.|.||||||+++--.+++
T Consensus 177 ~~DvsAW~~l-~lp~~iL~aL~~~-----gFs~Pt~IQsl~lp~a--i~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s 248 (731)
T KOG0347|consen 177 KVDVSAWKNL-FLPMEILRALSNL-----GFSRPTEIQSLVLPAA--IRGKVDILGAAETGSGKTLAFGIPIVERLLESS 248 (731)
T ss_pred ccChHHHhcC-CCCHHHHHHHHhc-----CCCCCccchhhcccHh--hccchhcccccccCCCceeeecchhhhhhhhcc
Confidence 3344456666 6899999999999 9999999999 99998 556 89999999999999996222211
Q ss_pred ------------CCC--EEEEccHHHHHHHHHHHHHhc----CCeeEEEeCcccc------ccCCCceEEEcceec----
Q 008489 101 ------------SSS--GIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMA---- 152 (564)
Q Consensus 101 ------------~~~--~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~------~~~~~~~i~~T~e~~---- 152 (564)
..+ ++|+.|||+||.|+.+.+... |+.+..++|+... ......|+|+||..+
T Consensus 249 ~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli 328 (731)
T KOG0347|consen 249 DDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELI 328 (731)
T ss_pred chHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHH
Confidence 124 799999999999999998843 8899999997532 234788999999433
Q ss_pred -------cccCcccEEEEccccccCCCCCcch--HHHHHhccC-----ccceEEEccCCC-ch-----------------
Q 008489 153 -------DVVSDYDCAVIDEIQMLGCKTRGFS--FTRALLGIC-----ANELHLCGDPAA-VP----------------- 200 (564)
Q Consensus 153 -------~~l~~~~~vViDEaH~~~~~~rg~~--~~~~ll~l~-----~~~~~l~~~~~~-~~----------------- 200 (564)
..+.+++++|+||++.+... |+- ++.+|--+. .....++.+.+. ..
T Consensus 329 ~e~n~~l~~~k~vkcLVlDEaDRmvek--ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~ 406 (731)
T KOG0347|consen 329 EEDNTHLGNFKKVKCLVLDEADRMVEK--GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDE 406 (731)
T ss_pred HhhhhhhhhhhhceEEEEccHHHHhhh--ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhh
Confidence 12588999999999999854 543 444443332 112233333211 10
Q ss_pred ---HHHHHHHHcC---CceEEEeec-------------ccCCCCCCCccc-cccccccCCCeEEEc-cHHHHHHHHHHHH
Q 008489 201 ---LIQQILQVTG---DDVKVQSYE-------------RLSPLVPLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIE 259 (564)
Q Consensus 201 ---~~~~l~~~~g---~~~~v~~~~-------------~~~~~~~~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~ 259 (564)
.++.+++..| .. .+.... -.++....+..+ ..+.. .+|..+||+ +...+..++-.|.
T Consensus 407 ~~~kiq~Lmk~ig~~~kp-kiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~ 484 (731)
T KOG0347|consen 407 LNAKIQHLMKKIGFRGKP-KIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLN 484 (731)
T ss_pred hhHHHHHHHHHhCccCCC-eeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee-cCCceEEEechHHHHHHHHHHHh
Confidence 1122332222 11 111111 011222222222 23333 455555555 8999999999998
Q ss_pred HcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhc
Q 008489 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338 (564)
Q Consensus 260 ~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~G 338 (564)
.... ...++|+.|.+..|...++.|++ ..--||||||++++|+||| |.+||+|.. |-+...|+||.|
T Consensus 485 ~L~i-~p~~LHA~M~QKqRLknLEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqV---------PrtseiYVHRSG 552 (731)
T KOG0347|consen 485 NLDI-PPLPLHASMIQKQRLKNLEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQV---------PRTSEIYVHRSG 552 (731)
T ss_pred hcCC-CCchhhHHHHHHHHHHhHHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeec---------CCccceeEeccc
Confidence 8877 78999999999999999999999 6667999999999999998 999999988 559999999999
Q ss_pred cCCCCCCCCCcEEEEEecCC
Q 008489 339 RAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 339 RaGR~g~~~~~G~~~~l~~~ 358 (564)
|+.|.+.. |+.+.++..
T Consensus 553 RTARA~~~---Gvsvml~~P 569 (731)
T KOG0347|consen 553 RTARANSE---GVSVMLCGP 569 (731)
T ss_pred ccccccCC---CeEEEEeCh
Confidence 99999987 887777543
No 57
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.3e-31 Score=290.74 Aligned_cols=320 Identities=20% Similarity=0.265 Sum_probs=243.2
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHHh-cCCe---eEEE
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNK-ANVS---CDLI 131 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P~r~La~q~~~~l~~-~g~~---~~~~ 131 (564)
++-++|+ ++-.+ ..+..|+++||||||||.++ ..++.++.+++|+.|.++|.+|.++.+.. +|-- +|+.
T Consensus 119 ~LD~fQ~~a~~~L--er~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~ 196 (1041)
T COG4581 119 ELDPFQQEAIAIL--ERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLM 196 (1041)
T ss_pred CcCHHHHHHHHHH--hCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccce
Confidence 4556677 77777 45899999999999999995 35566777899999999999999999984 4532 5999
Q ss_pred eCccccccCCCceEEEcceec--------cccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHH
Q 008489 132 TGQEREEVDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (564)
Q Consensus 132 ~G~~~~~~~~~~~i~~T~e~~--------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~ 203 (564)
||+.... .+++++++|+|++ ..+..+..||+||+|.+.|.+||..|...++.++. .+++++.++++++..
T Consensus 197 TGDv~IN-~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~-~v~~v~LSATv~N~~ 274 (1041)
T COG4581 197 TGDVSIN-PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD-HVRFVFLSATVPNAE 274 (1041)
T ss_pred ecceeeC-CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC-CCcEEEEeCCCCCHH
Confidence 9998776 5788888998766 34689999999999999999999999999887765 467788889999999
Q ss_pred HHHHHcC-----CceEEEeecccCCCCCC--------------Cc--------cccccc-------c-------------
Q 008489 204 QILQVTG-----DDVKVQSYERLSPLVPL--------------NV--------PLGSFS-------N------------- 236 (564)
Q Consensus 204 ~l~~~~g-----~~~~v~~~~~~~~~~~~--------------~~--------~l~~l~-------~------------- 236 (564)
++..|.+ +.+.+...+|+.|+... .+ ....+. +
T Consensus 275 EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~ 354 (1041)
T COG4581 275 EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRT 354 (1041)
T ss_pred HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccc
Confidence 9998866 45555566677766321 00 000000 0
Q ss_pred -------------------c--c--CCCeEEEccHHHHHHHHHHHHHc--------------------------------
Q 008489 237 -------------------I--Q--TGDCIVTFSRHAIYRLKKAIESR-------------------------------- 261 (564)
Q Consensus 237 -------------------~--~--~g~~iv~~s~~~~~~l~~~L~~~-------------------------------- 261 (564)
+ . -..+.|+||++.|+..+..+...
T Consensus 355 ~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~ 434 (1041)
T COG4581 355 KALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPL 434 (1041)
T ss_pred cccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcc
Confidence 0 0 01244555999998776655411
Q ss_pred --------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhH
Q 008489 262 --------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 333 (564)
Q Consensus 262 --------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~ 333 (564)
...++++||++|=|..|..+...|.. |-++|++||.+++.|+|.|++.||+....||||...++++..+|
T Consensus 435 ~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~--GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy 512 (1041)
T COG4581 435 QILEISALLLRGIAVHHAGLLPAIKELVEELFQE--GLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEY 512 (1041)
T ss_pred cHHHHHHHHhhhhhhhccccchHHHHHHHHHHhc--cceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHH
Confidence 01247799999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCcEEEEEecCCC---HHHHHhhhCCCChhhhhcCCCCcHHHHHH
Q 008489 334 KQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPMLESAGLFPNFDLIYM 388 (564)
Q Consensus 334 ~Qr~GRaGR~g~~~~~G~~~~l~~~~---~~~~~~~~~~~~~ei~~~~l~~~~~~l~~ 388 (564)
.|+.|||||.|-+ ..|.++...... ......+... .++-.+..+.+.+..+..
T Consensus 513 ~QmsGRAGRRGlD-~~G~vI~~~~~~~~~~~e~~~l~~~-~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 513 TQMSGRAGRRGLD-VLGTVIVIEPPFESEPSEAAGLASG-KLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred HHhhhhhcccccc-ccceEEEecCCCCCChHHHHHhhcC-CCccchhheecchhHHHh
Confidence 9999999999985 779988884332 2233333333 333344555555555544
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1.6e-30 Score=293.82 Aligned_cols=282 Identities=19% Similarity=0.222 Sum_probs=196.6
Q ss_pred ccCCCCCCccc-cchHHHhc----CCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----
Q 008489 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~----~~~~viv~apTGsGKT~~~~~----~l~~~~~~li~~P~r~La~q~~~~l~~---- 123 (564)
+++ .+|+.|. +++.+... .+.+.+++||||||||.+++. .+..+.+++|++||++||.|+++.+++
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 467 4899999 99988652 236899999999999999754 345667899999999999999998885
Q ss_pred cCCeeEEEeCccccc----------cCCCceEEEcceecc---ccCcccEEEEccccccCCCCCcchHHHHHhccCccce
Q 008489 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (564)
Q Consensus 124 ~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~ 190 (564)
+++++..++|..... .....++++|+..+. .+.+++++||||+|++... ....+..+. ...
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~-----~~~~L~~~~-~~~ 600 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVK-----QKEKLKELR-TSV 600 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchh-----HHHHHHhcC-CCC
Confidence 367888887754311 124678899986653 3688999999999997532 233333333 334
Q ss_pred EEEccCCC-chHHHHHHHHcCC-ce-EEEeecc-cCCCC-----CCCccc-ccc-ccc-cCCCeEEEc-cHHHHHHHHHH
Q 008489 191 HLCGDPAA-VPLIQQILQVTGD-DV-KVQSYER-LSPLV-----PLNVPL-GSF-SNI-QTGDCIVTF-SRHAIYRLKKA 257 (564)
Q Consensus 191 ~l~~~~~~-~~~~~~l~~~~g~-~~-~v~~~~~-~~~~~-----~~~~~l-~~l-~~~-~~g~~iv~~-s~~~~~~l~~~ 257 (564)
+++..++| .+..... ...+. .. .+..... ..+.. .....+ ..+ ..+ ..+.+++|+ +.++++.+++.
T Consensus 601 ~vL~~SATpiprtl~~-~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~ 679 (926)
T TIGR00580 601 DVLTLSATPIPRTLHM-SMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQ 679 (926)
T ss_pred CEEEEecCCCHHHHHH-HHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHH
Confidence 45544444 3322111 11111 11 1111000 00000 000111 011 112 345566665 68999999999
Q ss_pred HHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHh
Q 008489 258 IESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (564)
Q Consensus 258 L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Q 335 (564)
|++. ...++..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++...| +.+++.|
T Consensus 680 L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~--------gls~l~Q 749 (926)
T TIGR00580 680 LRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTTIIETGIDIPNANTIIIERADKF--------GLAQLYQ 749 (926)
T ss_pred HHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcccccccCCEEEEecCCCC--------CHHHHHH
Confidence 9875 34589999999999999999999999 9999999999999999998 999998877432 5778999
Q ss_pred hhccCCCCCCCCCcEEEEEecCCC
Q 008489 336 IAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 336 r~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|+||+||.|.. |+||.+++.+
T Consensus 750 r~GRvGR~g~~---g~aill~~~~ 770 (926)
T TIGR00580 750 LRGRVGRSKKK---AYAYLLYPHQ 770 (926)
T ss_pred HhcCCCCCCCC---eEEEEEECCc
Confidence 99999999987 9999998654
No 59
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.3e-31 Score=282.61 Aligned_cols=308 Identities=21% Similarity=0.306 Sum_probs=240.6
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH--H--cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcc
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL--E--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l--~--~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~ 135 (564)
.+-.+|+ ++-.. ..|..|+|.|+|.+|||.+|--++ . ..-+++|..|-++|.+|-++.|++---.++++||+.
T Consensus 297 elD~FQk~Ai~~l--erg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDv 374 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHL--ERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDV 374 (1248)
T ss_pred CccHHHHHHHHHH--HcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecce
Confidence 3556677 77766 569999999999999999974333 2 234789999999999999999996434677999987
Q ss_pred ccccCCCceEEEcceec--------cccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHH
Q 008489 136 REEVDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207 (564)
Q Consensus 136 ~~~~~~~~~i~~T~e~~--------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~ 207 (564)
... +.+..+++|+|++ +..+.++.||+||+|.+.|.+||..|...++.+++. +.++-.++++++..+++.
T Consensus 375 qin-PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H-V~~IlLSATVPN~~EFA~ 452 (1248)
T KOG0947|consen 375 QIN-PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH-VNFILLSATVPNTLEFAD 452 (1248)
T ss_pred eeC-CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc-ceEEEEeccCCChHHHHH
Confidence 765 5778888999776 456889999999999999999999999998877654 666777789999999999
Q ss_pred HcCCc-----eEEEeecccCCCCCC---C-------------------ccccccc-----------c-------------
Q 008489 208 VTGDD-----VKVQSYERLSPLVPL---N-------------------VPLGSFS-----------N------------- 236 (564)
Q Consensus 208 ~~g~~-----~~v~~~~~~~~~~~~---~-------------------~~l~~l~-----------~------------- 236 (564)
|.|+. +.+....|+.|++.. . ..-..+. .
T Consensus 453 WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk 532 (1248)
T KOG0947|consen 453 WIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGK 532 (1248)
T ss_pred HhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCc
Confidence 98872 333334566665321 0 0000000 0
Q ss_pred --ccCC-------------------------------CeEEEccHHHHHHHHHHHHHc----------------------
Q 008489 237 --IQTG-------------------------------DCIVTFSRHAIYRLKKAIESR---------------------- 261 (564)
Q Consensus 237 --~~~g-------------------------------~~iv~~s~~~~~~l~~~L~~~---------------------- 261 (564)
.+.| -++++||++.|++.++.|...
T Consensus 533 ~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rL 612 (1248)
T KOG0947|consen 533 TNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARL 612 (1248)
T ss_pred CCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhc
Confidence 0001 134556999999988887642
Q ss_pred ----------------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccc
Q 008489 262 ----------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 325 (564)
Q Consensus 262 ----------------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~ 325 (564)
...++++||||+=|-.+.-++-.|.. |-+|||+||-+++||||.|.++|||..+.|+||...
T Consensus 613 k~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr--GlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~ef 690 (1248)
T KOG0947|consen 613 KGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR--GLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEF 690 (1248)
T ss_pred ChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc--CceEEEeehhhhhhhcCCCceeEEeeehhhccCcce
Confidence 12369999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC---HHHHHhhhCCCChhhh
Q 008489 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPMLE 375 (564)
Q Consensus 326 ~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~---~~~~~~~~~~~~~ei~ 375 (564)
+.+.+-+|.|++|||||.|-+ ..|+++.+..+. ...++++.-..+-.+.
T Consensus 691 R~L~PGEytQMAGRAGRRGlD-~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 691 RELLPGEYTQMAGRAGRRGLD-ETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred eecCChhHHhhhccccccccC-cCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 999999999999999999985 779998886654 4677776666554443
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=9e-30 Score=283.81 Aligned_cols=278 Identities=19% Similarity=0.263 Sum_probs=191.8
Q ss_pred cCCCCCCccc-cchHHHhcC----CceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHhc----
Q 008489 58 DFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKA---- 124 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~----~~~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~q~~~~l~~~---- 124 (564)
+| .|++.|+ +++.+...- ..+++++||||||||.+++.+ +..+.+++|++||++||.|+++.++++
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 55 5999999 999886531 248999999999999997444 345568999999999999999998853
Q ss_pred CCeeEEEeCccccc----------cCCCceEEEcceecc---ccCcccEEEEccccccCCCCCcchHHHHHhccCccceE
Q 008489 125 NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191 (564)
Q Consensus 125 g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~ 191 (564)
|+++.+++|+.... .....++++|+..+. .+.+++++||||+|++...+| ..+... ....+
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr-----~~l~~~-~~~~~ 411 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQR-----LALREK-GENPH 411 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHH-----HHHHhc-CCCCC
Confidence 79999999986521 124788899986654 368999999999999854422 222222 11233
Q ss_pred EEccCCC-chHHHHHHHHcCCceEEEeec-ccC---CCCC-------CCcccccccc-c-cCCCeEEEcc---------H
Q 008489 192 LCGDPAA-VPLIQQILQVTGDDVKVQSYE-RLS---PLVP-------LNVPLGSFSN-I-QTGDCIVTFS---------R 248 (564)
Q Consensus 192 l~~~~~~-~~~~~~l~~~~g~~~~v~~~~-~~~---~~~~-------~~~~l~~l~~-~-~~g~~iv~~s---------~ 248 (564)
++..+++ .+....+ ...++. .+.... .+. +... ....+..+.+ . ..+.++||+. .
T Consensus 412 iL~~SATp~prtl~~-~~~g~~-~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~ 489 (681)
T PRK10917 412 VLVMTATPIPRTLAM-TAYGDL-DVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDL 489 (681)
T ss_pred EEEEeCCCCHHHHHH-HHcCCC-ceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhH
Confidence 4444444 2222111 222321 111111 010 1100 0011111111 1 2345565552 3
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCcccc
Q 008489 249 HAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (564)
Q Consensus 249 ~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~ 326 (564)
..+..+++.|.+.. ..++..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| ++.||+++.++|
T Consensus 490 ~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~------ 561 (681)
T PRK10917 490 QSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAERF------ 561 (681)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCCC------
Confidence 44667777777652 2579999999999999999999999 9999999999999999998 999999987542
Q ss_pred ccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 327 p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
+.+++.||+||+||.|.. |+|+.++.
T Consensus 562 --gls~lhQ~~GRvGR~g~~---g~~ill~~ 587 (681)
T PRK10917 562 --GLAQLHQLRGRVGRGAAQ---SYCVLLYK 587 (681)
T ss_pred --CHHHHHHHhhcccCCCCc---eEEEEEEC
Confidence 578899999999999987 99999975
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=291.79 Aligned_cols=282 Identities=16% Similarity=0.206 Sum_probs=195.9
Q ss_pred ccCCCCCCccc-cchHHHhc----CCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHh----
Q 008489 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~----~~~~viv~apTGsGKT~~~~----~~l~~~~~~li~~P~r~La~q~~~~l~~---- 123 (564)
+.+ .+|+.|+ ++|.+... ...+++++||||||||.+++ ..+..+++++|++||++||.|+++.+.+
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 466 6999999 99988652 13789999999999999764 3345667899999999999999998874
Q ss_pred cCCeeEEEeCccccc----------cCCCceEEEcceeccc---cCcccEEEEccccccCCCCCcchHHHHHhccCccce
Q 008489 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (564)
Q Consensus 124 ~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~---l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~ 190 (564)
+++.+..++|..... .....++++|++++.. +.+++++||||+|++.. .....+..+.. ..
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~-----~~~e~lk~l~~-~~ 749 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGV-----RHKERIKAMRA-DV 749 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcch-----hHHHHHHhcCC-CC
Confidence 356777777743211 1246789999976642 57899999999999743 33333433333 33
Q ss_pred EEEccCCC-chHHHHHHHH-cCCceEEEeecc-cCCCCCC----Cc-cc--cccccc-cCCCeEEEc-cHHHHHHHHHHH
Q 008489 191 HLCGDPAA-VPLIQQILQV-TGDDVKVQSYER-LSPLVPL----NV-PL--GSFSNI-QTGDCIVTF-SRHAIYRLKKAI 258 (564)
Q Consensus 191 ~l~~~~~~-~~~~~~l~~~-~g~~~~v~~~~~-~~~~~~~----~~-~l--~~l~~~-~~g~~iv~~-s~~~~~~l~~~L 258 (564)
+++..++| .+....+... ..+...+..... ..+.... .. .+ ..+.++ ..|.++||+ +++.++.+++.|
T Consensus 750 qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred cEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 44444444 4433333221 112222211000 0011000 00 00 011122 345666666 788999999999
Q ss_pred HHcC-CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhh
Q 008489 259 ESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQI 336 (564)
Q Consensus 259 ~~~~-~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr 336 (564)
.+.. ..++..+||+|++++|.+++..|++ |+.+|||||+++++|+|+| +++||..+...| +.++|.||
T Consensus 830 ~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f--------glaq~~Qr 899 (1147)
T PRK10689 830 AELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERADHF--------GLAQLHQL 899 (1147)
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECchhhcccccccCCEEEEecCCCC--------CHHHHHHH
Confidence 8862 3489999999999999999999999 9999999999999999998 999997655332 46789999
Q ss_pred hccCCCCCCCCCcEEEEEecCC
Q 008489 337 AGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 337 ~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+||+||.|.. |+||.+++.
T Consensus 900 ~GRvGR~g~~---g~a~ll~~~ 918 (1147)
T PRK10689 900 RGRVGRSHHQ---AYAWLLTPH 918 (1147)
T ss_pred hhccCCCCCc---eEEEEEeCC
Confidence 9999999988 999999764
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=2.1e-29 Score=279.04 Aligned_cols=287 Identities=18% Similarity=0.245 Sum_probs=193.9
Q ss_pred HHHhcccCCCccccCCCCCCccc-cchHHHhcC----CceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHH
Q 008489 45 IRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (564)
Q Consensus 45 l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~----~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~ 115 (564)
+.+.++.. +| .|++.|+ +++.+.... ..+.+++||||||||.+++.++ ..+.+++|++||++||.
T Consensus 225 ~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 225 LTKFLASL-----PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHhC-----CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 44455555 66 6999999 998886531 1368999999999999975443 35568999999999999
Q ss_pred HHHHHHHhc----CCeeEEEeCccccc----------cCCCceEEEcceecc---ccCcccEEEEccccccCCCCCcchH
Q 008489 116 EVAKRLNKA----NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSF 178 (564)
Q Consensus 116 q~~~~l~~~----g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~~~ 178 (564)
|+++.+.++ |+++.+++|+.... .....++++|+..+. .+.+++++||||+|++...+|..
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~-- 376 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKK-- 376 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHH--
Confidence 999998853 79999999975432 124688899986653 35889999999999986543322
Q ss_pred HHHHhccCc--cceEEEccCCC-chHHHHHHHHcCCceEEEeecc-c---CCC-------CCCCcccccccc-c-cCCCe
Q 008489 179 TRALLGICA--NELHLCGDPAA-VPLIQQILQVTGDDVKVQSYER-L---SPL-------VPLNVPLGSFSN-I-QTGDC 242 (564)
Q Consensus 179 ~~~ll~l~~--~~~~l~~~~~~-~~~~~~l~~~~g~~~~v~~~~~-~---~~~-------~~~~~~l~~l~~-~-~~g~~ 242 (564)
+..... ...+++..+++ .+....+ ...++ +.+..... + .+. ......+..+.+ . ..+.+
T Consensus 377 ---l~~~~~~~~~~~~l~~SATp~prtl~l-~~~~~-l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~ 451 (630)
T TIGR00643 377 ---LREKGQGGFTPHVLVMSATPIPRTLAL-TVYGD-LDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQA 451 (630)
T ss_pred ---HHHhcccCCCCCEEEEeCCCCcHHHHH-HhcCC-cceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcE
Confidence 222111 12233333333 2211111 11122 11111000 0 000 000111111111 1 23455
Q ss_pred EEEc-cH--------HHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 243 IVTF-SR--------HAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 243 iv~~-s~--------~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
++|+ .. ..++.+++.|.+. ....+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| ++.
T Consensus 452 ~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 452 YVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred EEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECceeecCcccCCCcE
Confidence 5555 22 4566777777654 34579999999999999999999999 9999999999999999998 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
||+++.++ .+.+++.||+||+||.|.. |.|+.++.
T Consensus 530 VIi~~~~r--------~gls~lhQ~~GRvGR~g~~---g~~il~~~ 564 (630)
T TIGR00643 530 MVIEDAER--------FGLSQLHQLRGRVGRGDHQ---SYCLLVYK 564 (630)
T ss_pred EEEeCCCc--------CCHHHHHHHhhhcccCCCC---cEEEEEEC
Confidence 99988743 2578999999999999987 99999973
No 63
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=280.76 Aligned_cols=333 Identities=21% Similarity=0.260 Sum_probs=252.6
Q ss_pred CCCchhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------
Q 008489 28 SLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------ 100 (564)
Q Consensus 28 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------ 100 (564)
..+..-.+-.+..++..-..++. |...+..+|. .++.+. ....++++|||||+|||-.|+..+++
T Consensus 283 pf~~~Ekl~~iselP~Wnq~aF~-------g~~sLNrIQS~v~daAl-~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~ 354 (1674)
T KOG0951|consen 283 PFHKEEKLVKISELPKWNQPAFF-------GKQSLNRIQSKVYDAAL-RGDENMLLCAPTGAGKTNVAVLTILQELGNHL 354 (1674)
T ss_pred CCCccceeEeecCCcchhhhhcc-------cchhhhHHHHHHHHHHh-cCcCcEEEeccCCCCchHHHHHHHHHHHhccc
Confidence 33444445555556665655555 4467999999 777764 35678999999999999998655542
Q ss_pred ---------CCCEEEEccHHHHHHHHHHHHH----hcCCeeEEEeCccc---cccCCCceEEEcceecccc---------
Q 008489 101 ---------SSSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQER---EEVDGAKHRAVTVEMADVV--------- 155 (564)
Q Consensus 101 ---------~~~~li~~P~r~La~q~~~~l~----~~g~~~~~~~G~~~---~~~~~~~~i~~T~e~~~~l--------- 155 (564)
..+++|++|.++|+.++...+. .+|+.|.-.||+.. ....++.++++|||.+|..
T Consensus 355 r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY 434 (1674)
T KOG0951|consen 355 REDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAY 434 (1674)
T ss_pred ccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhH
Confidence 1368999999999999977554 67999999999865 3345899999999998653
Q ss_pred -CcccEEEEccccccCCCCCcchHHHHHhcc------CccceEEEccCCCchHHHHHHHHcCC----ceEEEeecccCCC
Q 008489 156 -SDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGD----DVKVQSYERLSPL 224 (564)
Q Consensus 156 -~~~~~vViDEaH~~~~~~rg~~~~~~ll~l------~~~~~~l~~~~~~~~~~~~l~~~~g~----~~~v~~~~~~~~~ 224 (564)
+-++++||||+|++.| +||.....+.... .....+++|.++++++..++....+. -+.+...+|++|+
T Consensus 435 ~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL 513 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPL 513 (1674)
T ss_pred HHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCc
Confidence 5689999999999987 7999976555332 23457899999999999888775443 2345556788888
Q ss_pred CCC------Ccccc------------ccccccCCCeEEEc-cHHHHHHHHHHHHHc------------------------
Q 008489 225 VPL------NVPLG------------SFSNIQTGDCIVTF-SRHAIYRLKKAIESR------------------------ 261 (564)
Q Consensus 225 ~~~------~~~l~------------~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~------------------------ 261 (564)
... ++++. .+....++.++||. ||++.-+.++.|+..
T Consensus 514 ~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrte 593 (1674)
T KOG0951|consen 514 KQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTE 593 (1674)
T ss_pred cceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhh
Confidence 542 11111 12233567888888 899988888877732
Q ss_pred ------------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCcc--ccc
Q 008489 262 ------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRD 327 (564)
Q Consensus 262 ------------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~--~~p 327 (564)
...+++.||+||+..+|...++.|.+ |.++|+|+|..+++|+|+|.+.||.-++..||+.. ..+
T Consensus 594 a~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~e 671 (1674)
T KOG0951|consen 594 AGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTE 671 (1674)
T ss_pred hhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEeehhhhhhcCCCcceEEecCccccCcccCcccc
Confidence 13479999999999999999999999 99999999999999999999999999999999874 556
Q ss_pred cCHhhHHhhhccCCCCCCC-CCcEEEEEecCCCHHHHHhhhCCCCh
Q 008489 328 LTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLEPSP 372 (564)
Q Consensus 328 ~s~~~~~Qr~GRaGR~g~~-~~~G~~~~l~~~~~~~~~~~~~~~~~ 372 (564)
+|+.+..||.|||||.+-+ ++.|+++. ...+..++.+.++...|
T Consensus 672 lsp~dv~qmlgragrp~~D~~gegiiit-~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 672 LSPLDVMQMLGRAGRPQYDTCGEGIIIT-DHSELQYYLSLMNQQLP 716 (1674)
T ss_pred CCHHHHHHHHhhcCCCccCcCCceeecc-CchHhhhhHHhhhhcCC
Confidence 7999999999999998865 33344433 33345666677777766
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.1e-29 Score=264.65 Aligned_cols=267 Identities=15% Similarity=0.147 Sum_probs=177.9
Q ss_pred eEEEEccCCccHHHHHHHHHHc------CCCEEEEccHHHHHHHHHHHHHhc-CCeeEEEeCcccc--------------
Q 008489 79 VILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLITGQERE-------------- 137 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~------~~~~li~~P~r~La~q~~~~l~~~-g~~~~~~~G~~~~-------------- 137 (564)
++++.||||||||++++.+++. .++++|++|+++|+.|+++++.+. |..++..+|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4799999999999998766542 357899999999999999999975 7666666553220
Q ss_pred ----------ccCCCceEEEcceeccc-----c---------CcccEEEEccccccCCCCCcchHHHHHhccCccceEEE
Q 008489 138 ----------EVDGAKHRAVTVEMADV-----V---------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193 (564)
Q Consensus 138 ----------~~~~~~~i~~T~e~~~~-----l---------~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~ 193 (564)
.....+++++|++.+.. + ...+++|+||+|.+.+..++. +...+-.+.....+++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 01235688999865321 1 124799999999998653333 2222222223344556
Q ss_pred ccCCCch-HHHHHHHHcCCceEEEeecc-----c--CCC----C---CCCcccccccc--ccCCCeEEEc-cHHHHHHHH
Q 008489 194 GDPAAVP-LIQQILQVTGDDVKVQSYER-----L--SPL----V---PLNVPLGSFSN--IQTGDCIVTF-SRHAIYRLK 255 (564)
Q Consensus 194 ~~~~~~~-~~~~l~~~~g~~~~v~~~~~-----~--~~~----~---~~~~~l~~l~~--~~~g~~iv~~-s~~~~~~l~ 255 (564)
..+++.+ .+.++............... . .+. . .....+..+.+ ..++.++||+ +++.++.++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 6666654 33444332221100000000 0 000 0 00001111111 1356777777 899999999
Q ss_pred HHHHHcCC-CeEEEEcCCCCHHHHHHH----HHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCH
Q 008489 256 KAIESRGK-HLCSIVYGSLPPETRTRQ----ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 330 (564)
Q Consensus 256 ~~L~~~~~-~~v~~lhg~l~~~~R~~~----~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~ 330 (564)
+.|.+.+. ..+..+||++++.+|... ++.|++ |..+|||||+++++|+|||++.||++.. +.
T Consensus 240 ~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~-----------~~ 306 (358)
T TIGR01587 240 QQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELA-----------PI 306 (358)
T ss_pred HHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCC-----------CH
Confidence 99987654 269999999999999764 788998 8999999999999999999999998754 67
Q ss_pred hhHHhhhccCCCCCCCC-CcEEEEEecCCC
Q 008489 331 PEVKQIAGRAGRYGSKF-PVGEVTCLDSED 359 (564)
Q Consensus 331 ~~~~Qr~GRaGR~g~~~-~~G~~~~l~~~~ 359 (564)
.+|+||+||+||.|.+. ..|.+|.++...
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 89999999999998753 246888886644
No 65
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=253.83 Aligned_cols=293 Identities=18% Similarity=0.167 Sum_probs=215.7
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH-----HH----------cCCCE
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR-----LE----------SSSSG 104 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~-----l~----------~~~~~ 104 (564)
.+..+...+++. |+..|+++|- -+|.+ +.+++.|-+|-||||||+++... |. +++-+
T Consensus 177 FP~~~L~~lk~K-----GI~~PTpIQvQGlPvv--LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~g 249 (610)
T KOG0341|consen 177 FPKPLLRGLKKK-----GIVHPTPIQVQGLPVV--LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYG 249 (610)
T ss_pred CCHHHHHHHHhc-----CCCCCCceeecCcceE--eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCee
Confidence 577888888888 9999999999 99999 77999999999999999995222 11 23468
Q ss_pred EEEccHHHHHHHHHHHHHhc-------C---CeeEEEeCcccc------ccCCCceEEEcceec-c-------ccCcccE
Q 008489 105 IYCGPLRLLAWEVAKRLNKA-------N---VSCDLITGQERE------EVDGAKHRAVTVEMA-D-------VVSDYDC 160 (564)
Q Consensus 105 li~~P~r~La~q~~~~l~~~-------g---~~~~~~~G~~~~------~~~~~~~i~~T~e~~-~-------~l~~~~~ 160 (564)
++++|.|+||.|+++-+..+ | +.+.+..|+... ...+..++++||..+ + .|.-+.+
T Consensus 250 LiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRy 329 (610)
T KOG0341|consen 250 LIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRY 329 (610)
T ss_pred EEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHH
Confidence 99999999999999877643 3 335555565332 124778889999433 3 2466889
Q ss_pred EEEccccccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCCceEEEeecccC--CCCC---------
Q 008489 161 AVIDEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLS--PLVP--------- 226 (564)
Q Consensus 161 vViDEaH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~~--~~~~--------- 226 (564)
+.+|||+.+.|. ||. ...++--+......+..+.+....++.+++. .-..+.+.. .|.. .+.+
T Consensus 330 L~lDEADRmiDm--GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNV-GRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 330 LTLDEADRMIDM--GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNV-GRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred hhhhhHHHHhhc--cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEec-ccccccchhHHHHHHHHHh
Confidence 999999999977 665 3334434455555666665555556555543 222222221 1111 1100
Q ss_pred CCcc---ccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccc
Q 008489 227 LNVP---LGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302 (564)
Q Consensus 227 ~~~~---l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~ 302 (564)
..+. +..+.+ ....+++|. .+.++..+.++|--.|. .++.+||+-++++|...++.|+. |+-+||||||+++
T Consensus 407 EaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGV-EavaIHGGKDQedR~~ai~afr~--gkKDVLVATDVAS 482 (610)
T KOG0341|consen 407 EAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGV-EAVAIHGGKDQEDRHYAIEAFRA--GKKDVLVATDVAS 482 (610)
T ss_pred hhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccc-eeEEeecCcchhHHHHHHHHHhc--CCCceEEEecchh
Confidence 0111 122333 334456666 78999999999987777 89999999999999999999999 9999999999999
Q ss_pred cccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 303 MGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 303 ~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
.|+|+| |.+|||||+ |-...+|+||+||+||.|.. |++++|..+.
T Consensus 483 KGLDFp~iqHVINyDM---------P~eIENYVHRIGRTGRsg~~---GiATTfINK~ 528 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDM---------PEEIENYVHRIGRTGRSGKT---GIATTFINKN 528 (610)
T ss_pred ccCCCccchhhccCCC---------hHHHHHHHHHhcccCCCCCc---ceeeeeeccc
Confidence 999998 999999999 67999999999999999998 9998886554
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.4e-31 Score=262.86 Aligned_cols=305 Identities=21% Similarity=0.221 Sum_probs=201.3
Q ss_pred HHHhcccCCCccccCCCCCCccc-cchHHHhc-------CCceEEEEccCCccHHHHHH----HHHHcC----CCEEEEc
Q 008489 45 IRSYCSGSGMKKFDFTDLTRPHT-WYPLARKK-------VRKVILHVGPTNSGKTHQAL----SRLESS----SSGIYCG 108 (564)
Q Consensus 45 l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~-------~~~~viv~apTGsGKT~~~~----~~l~~~----~~~li~~ 108 (564)
+-.++.++ +++.+.++|. .+|.+..- ..++++|.||||||||+++. |.|... -+++|++
T Consensus 148 ~~q~l~k~-----~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavViv 222 (620)
T KOG0350|consen 148 IDQLLVKM-----AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIV 222 (620)
T ss_pred HHHHHHHh-----hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEe
Confidence 33446677 8999999997 66666321 26899999999999999963 434333 2689999
Q ss_pred cHHHHHHHHHHHHHhc----CCeeEEEeCcccccc-----------CCCceEEEccee-ccc--------cCcccEEEEc
Q 008489 109 PLRLLAWEVAKRLNKA----NVSCDLITGQEREEV-----------DGAKHRAVTVEM-ADV--------VSDYDCAVID 164 (564)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~-----------~~~~~i~~T~e~-~~~--------l~~~~~vViD 164 (564)
|+|+|+.|+++.|.++ |+.|+.++|+..... ....++++||.. .++ |++++++|||
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999865 777888888643221 134788999943 333 5889999999
Q ss_pred cccccCCCCCcchHHHHHhccCccc---------eEEEccCCCchH--------------------------HHHHHHH-
Q 008489 165 EIQMLGCKTRGFSFTRALLGICANE---------LHLCGDPAAVPL--------------------------IQQILQV- 208 (564)
Q Consensus 165 EaH~~~~~~rg~~~~~~ll~l~~~~---------~~l~~~~~~~~~--------------------------~~~l~~~- 208 (564)
||+++.+. .-..|.+.++.+.++. +....+....-+ ..++...
T Consensus 303 EADRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 303 EADRLLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred hHHHHHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 99999864 1223544444333221 111111000000 0001000
Q ss_pred --cCCceEEE-----eecccCCCC-------CCCccc--cccccccCCCeEEEc--cHHHHHHHHHHHH-HcC--CCeEE
Q 008489 209 --TGDDVKVQ-----SYERLSPLV-------PLNVPL--GSFSNIQTGDCIVTF--SRHAIYRLKKAIE-SRG--KHLCS 267 (564)
Q Consensus 209 --~g~~~~v~-----~~~~~~~~~-------~~~~~l--~~l~~~~~g~~iv~~--s~~~~~~l~~~L~-~~~--~~~v~ 267 (564)
..+-+.+. .|..+..+. ...+++ ..+....+..-++|| |...+..++..|. ... ..++.
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s 461 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVS 461 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhh
Confidence 01111111 111111110 001111 112222334444444 6888999998887 332 23577
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 268 ~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
.+.|+++...|...++.|+. |++.||||||++++|+|+ +|+.||+|++ |.+..+|+||+||++|.|..
T Consensus 462 ~~t~~l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~---------P~~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 462 EFTGQLNGKRRYKMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDP---------PASDKTYVHRAGRTARAGQD 530 (620)
T ss_pred hhhhhhhHHHHHHHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCC---------CchhhHHHHhhcccccccCC
Confidence 79999999999999999999 999999999999999999 5999999999 77999999999999999998
Q ss_pred CCcEEEEEecC-CCHHHHHhhhCC
Q 008489 347 FPVGEVTCLDS-EDLPLLHKSLLE 369 (564)
Q Consensus 347 ~~~G~~~~l~~-~~~~~~~~~~~~ 369 (564)
|.|+.+-. .+...|.++++.
T Consensus 531 ---G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 531 ---GYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ---ceEEEeeccccchHHHHHHHH
Confidence 99998854 455566665543
No 67
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.4e-30 Score=253.22 Aligned_cols=302 Identities=20% Similarity=0.218 Sum_probs=214.9
Q ss_pred hccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-------
Q 008489 33 KIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S------- 100 (564)
Q Consensus 33 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~------- 100 (564)
..|.+|. |++.+.+++.+. |+..||-+|+ +||.+ +.|++++..|.||||||.+++..++ .
T Consensus 19 ktFe~~g-LD~RllkAi~~l-----G~ekpTlIQs~aIpla--LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~ 90 (569)
T KOG0346|consen 19 KTFEEFG-LDSRLLKAITKL-----GWEKPTLIQSSAIPLA--LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDG 90 (569)
T ss_pred ccHHHhC-CCHHHHHHHHHh-----CcCCcchhhhcccchh--hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccc
Confidence 3455554 899999999999 9999999999 99999 7799999999999999999754443 2
Q ss_pred --CCCEEEEccHHHHHHHHHHHHHhcC------CeeEEEeCc---cc---cccCCCceEEEcceec---------cccCc
Q 008489 101 --SSSGIYCGPLRLLAWEVAKRLNKAN------VSCDLITGQ---ER---EEVDGAKHRAVTVEMA---------DVVSD 157 (564)
Q Consensus 101 --~~~~li~~P~r~La~q~~~~l~~~g------~~~~~~~G~---~~---~~~~~~~~i~~T~e~~---------~~l~~ 157 (564)
+..+++++|||+||.|++..+.++- +.+.-+... +. ...+.+.|+++||..+ ..+..
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~ 170 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDS 170 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhh
Confidence 1357999999999999999888652 222112211 11 1124677888998332 34688
Q ss_pred ccEEEEccccccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHHcC-CceEEE-------------eeccc
Q 008489 158 YDCAVIDEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKVQ-------------SYERL 221 (564)
Q Consensus 158 ~~~vViDEaH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g-~~~~v~-------------~~~~~ 221 (564)
++++|+|||+.+.. .||. +..+.-.++..-..+..+.+..+.+..+-+..- ..+.+. .|...
T Consensus 171 l~~LVvDEADLlls--fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~ 248 (569)
T KOG0346|consen 171 LSFLVVDEADLLLS--FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVK 248 (569)
T ss_pred eeeEEechhhhhhh--cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEE
Confidence 99999999999984 4765 334444455443344444444455555444322 122211 11111
Q ss_pred CCCCCCCccccccc--cccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEec
Q 008489 222 SPLVPLNVPLGSFS--NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298 (564)
Q Consensus 222 ~~~~~~~~~l~~l~--~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT 298 (564)
+........+..+. ++-.|..++|. +.+.+..+.-.|++.|. +.+++.|.||..-|..+++.|+. |-++|||||
T Consensus 249 cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGi-ksciLNseLP~NSR~Hii~QFNk--G~YdivIAt 325 (569)
T KOG0346|consen 249 CSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGI-KSCILNSELPANSRCHIIEQFNK--GLYDIVIAT 325 (569)
T ss_pred eccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCc-HhhhhcccccccchhhHHHHhhC--cceeEEEEc
Confidence 11111111111111 22356665555 89999999999999988 89999999999999999999999 999999999
Q ss_pred c-----------------------------------cccccccc-CccEEEecCccccCCccccccCHhhHHhhhccCCC
Q 008489 299 D-----------------------------------AIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (564)
Q Consensus 299 ~-----------------------------------~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR 342 (564)
| -+.+|||+ .|..||++|+ |.+..+|+||+||++|
T Consensus 326 D~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 326 DDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------PETVTSYIHRVGRTAR 396 (569)
T ss_pred cCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC---------CCchHHHHHhcccccc
Confidence 9 24689999 5999999999 6799999999999999
Q ss_pred CCCCCCcEEEEEecCCC
Q 008489 343 YGSKFPVGEVTCLDSED 359 (564)
Q Consensus 343 ~g~~~~~G~~~~l~~~~ 359 (564)
.+.. |.+..|....
T Consensus 397 g~n~---GtalSfv~P~ 410 (569)
T KOG0346|consen 397 GNNK---GTALSFVSPK 410 (569)
T ss_pred CCCC---CceEEEecch
Confidence 9987 8887775443
No 68
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=246.98 Aligned_cols=298 Identities=16% Similarity=0.155 Sum_probs=210.5
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC--------CCEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--------SSGIY 106 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~--------~~~li 106 (564)
..++.+.+.+... +|..++++|. ++|.+ +.+++++.++|||||||+++...++ .. -+++|
T Consensus 142 ~~~~~ll~nl~~~-----~F~~Pt~iq~~aipvf--l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~I 214 (593)
T KOG0344|consen 142 SMNKRLLENLQEL-----GFDEPTPIQKQAIPVF--LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALI 214 (593)
T ss_pred hhcHHHHHhHhhC-----CCCCCCcccchhhhhh--hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEE
Confidence 4677888888888 9999999999 99999 6799999999999999999743332 21 25799
Q ss_pred EccHHHHHHHHHHHHHhcCCe------eEEEeCccc-c------ccCCCceEEEcceec----------cccCcccEEEE
Q 008489 107 CGPLRLLAWEVAKRLNKANVS------CDLITGQER-E------EVDGAKHRAVTVEMA----------DVVSDYDCAVI 163 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~g~~------~~~~~G~~~-~------~~~~~~~i~~T~e~~----------~~l~~~~~vVi 163 (564)
+.|+|+||.|++..+.++.+. +........ . ......+++.||... .-+.++.++|+
T Consensus 215 l~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~ 294 (593)
T KOG0344|consen 215 LSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVV 294 (593)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEee
Confidence 999999999999999976532 111111100 0 011346778888221 23688999999
Q ss_pred ccccccCCCCCcch--HHHHHhccCccceEEEccCCCc-hHHHHHHHHcCCc-eEEEeecccCCCCCC-----------C
Q 008489 164 DEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQVTGDD-VKVQSYERLSPLVPL-----------N 228 (564)
Q Consensus 164 DEaH~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~g~~-~~v~~~~~~~~~~~~-----------~ 228 (564)
||++.+.+. -++. +.+++..+....+++..-+++. ..+++++...-.. ..+..-.+....... .
T Consensus 295 dEaD~lfe~-~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~ 373 (593)
T KOG0344|consen 295 DEADLLFEP-EFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKG 373 (593)
T ss_pred chHHhhhCh-hhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchh
Confidence 999999865 1322 4455655666655553333333 4455555443221 111111111111110 0
Q ss_pred cc--c-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccc
Q 008489 229 VP--L-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (564)
Q Consensus 229 ~~--l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~G 304 (564)
+. + ..+..--+...+||. +.+.+.++...|.......+.++||..++.+|.+.++.|+. |+++||+||+++++|
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvLicTdll~RG 451 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIWVLICTDLLARG 451 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCeeEEEehhhhhcc
Confidence 11 1 111111233456666 99999999999965555589999999999999999999999 999999999999999
Q ss_pred ccc-CccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 305 LNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 305 ldi-pv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+|+ .|..||++|. |-|..+|+||+||+||.|+. |.+|+||+++
T Consensus 452 iDf~gvn~VInyD~---------p~s~~syihrIGRtgRag~~---g~Aitfytd~ 495 (593)
T KOG0344|consen 452 IDFKGVNLVINYDF---------PQSDLSYIHRIGRTGRAGRS---GKAITFYTDQ 495 (593)
T ss_pred ccccCcceEEecCC---------CchhHHHHHHhhccCCCCCC---cceEEEeccc
Confidence 999 6999999999 55999999999999999998 9999998764
No 69
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=262.87 Aligned_cols=297 Identities=17% Similarity=0.202 Sum_probs=217.8
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------------CCCEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------SSSGIY 106 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------------~~~~li 106 (564)
++...+...+++. |+..++++|. ++|.+ +.|++||.+|.||||||..++..+.. ++-++|
T Consensus 371 gl~~~il~tlkkl-----~y~k~~~IQ~qAiP~I--msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 371 GLSSKILETLKKL-----GYEKPTPIQAQAIPAI--MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred CchHHHHHHHHHh-----cCCCCcchhhhhcchh--ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 3677777777888 9999999998 99999 88999999999999999998544432 234689
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcc-eeccc----------cCcccEEEEcc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTV-EMADV----------VSDYDCAVIDE 165 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~-e~~~~----------l~~~~~vViDE 165 (564)
++|||+||.|+.+.+.++ |+.+..++|+.... ..++.|+|||| .|.+. +.++.++|+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999999998854 88888888876543 23789999999 44443 46677999999
Q ss_pred ccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHc-CCceEEEee------------cccCCCCC-C-Ccc
Q 008489 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSY------------ERLSPLVP-L-NVP 230 (564)
Q Consensus 166 aH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~-g~~~~v~~~------------~~~~~~~~-~-~~~ 230 (564)
++.+.|....+..+.++-.+......+..+.+....+..+.... ...+.+..- .+..+.+. + .+.
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 99999764444455655455444333333332222233333211 111111110 01111000 0 111
Q ss_pred cccc-ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 231 LGSF-SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 231 l~~l-~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
+..+ .....++.|||. +...|..+.+.|.+.+. .+..+||+.++.+|...++.|++ +..++||||+++++|+|+.
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~-~~~slHGgv~q~dR~sti~dfK~--~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY-NCDSLHGGVDQHDRSSTIEDFKN--GVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc-chhhhcCCCchHHHHhHHHHHhc--cCceEEEehhhhhcccccc
Confidence 1111 112478888888 68999999999997776 77779999999999999999999 9999999999999999996
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+..||+|+. |-....|.||+||+||+|+. |.+++|...
T Consensus 681 ~l~Lvvnyd~---------pnh~edyvhR~gRTgragrk---g~AvtFi~p 719 (997)
T KOG0334|consen 681 ELILVVNYDF---------PNHYEDYVHRVGRTGRAGRK---GAAVTFITP 719 (997)
T ss_pred cceEEEEccc---------chhHHHHHHHhcccccCCcc---ceeEEEeCh
Confidence 999999999 44788899999999999998 898888665
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=3.4e-27 Score=255.13 Aligned_cols=278 Identities=17% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcCC-CEEEEccHHHHHHHHHHHHHhcCC----eeE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSS-SGIYCGPLRLLAWEVAKRLNKANV----SCD 129 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~~-~~li~~P~r~La~q~~~~l~~~g~----~~~ 129 (564)
..|++.|+ +++.+ +.+++.++++|||||||..+... +...+ +++|++||++|+.|+.+++.+++. .+.
T Consensus 113 ~~~r~~Q~~av~~~--l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEG--LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHH--HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 57888999 88887 45788999999999999986432 22333 799999999999999999997642 233
Q ss_pred EEeCccccccCCCceEEEcceec-----cccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchH---
Q 008489 130 LITGQEREEVDGAKHRAVTVEMA-----DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL--- 201 (564)
Q Consensus 130 ~~~G~~~~~~~~~~~i~~T~e~~-----~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~--- 201 (564)
.+.|+.... .+..++++|++.+ .++.+++++|+||||++... .+..++..+... ..++|.+++...
T Consensus 191 ~i~~g~~~~-~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~-~~~lGLTATp~~~~~ 264 (501)
T PHA02558 191 KIYSGTAKD-TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC-KFKFGLTGSLRDGKA 264 (501)
T ss_pred EEecCcccC-CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhcc-ceEEEEeccCCCccc
Confidence 333333222 3578899998554 24688999999999998743 344444444222 223343333321
Q ss_pred -HHHHHHHcCCce-----------------EEEeec-ccCCC--C-----CCCc-------------cc-ccccc--ccC
Q 008489 202 -IQQILQVTGDDV-----------------KVQSYE-RLSPL--V-----PLNV-------------PL-GSFSN--IQT 239 (564)
Q Consensus 202 -~~~l~~~~g~~~-----------------~v~~~~-~~~~~--~-----~~~~-------------~l-~~l~~--~~~ 239 (564)
...+....|+.. .+.... +..+. . .... .+ ..... ...
T Consensus 265 ~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~ 344 (501)
T PHA02558 265 NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKG 344 (501)
T ss_pred cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 111122222211 110000 00000 0 0000 00 00000 123
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEec-cccccccccC-ccEEEecC
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT-~~~~~Gldip-v~~VI~~~ 316 (564)
+..+|+| +.++++.+++.|++.+. .+..+||+++.++|..+.+.|++ |+..||||| +++++|+|+| +++||++.
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~-~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYD-KVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEec
Confidence 4556655 78899999999999877 89999999999999999999998 888899998 8999999998 99999988
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
+.+ |...|.||+||+||.++++....+|-+.+
T Consensus 422 p~~---------s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 422 PSK---------SKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred CCc---------chhhhhhhhhccccCCCCCceEEEEEeec
Confidence 844 88999999999999988645556665554
No 71
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=7.4e-27 Score=257.17 Aligned_cols=268 Identities=16% Similarity=0.125 Sum_probs=174.1
Q ss_pred cCCCCCCccc-cchHHHhcCCc-eEEEEccCCccHHHHHHHHHH---cC---C-CEEEEccHHHHHHHHHHHHHhcC---
Q 008489 58 DFTDLTRPHT-WYPLARKKVRK-VILHVGPTNSGKTHQALSRLE---SS---S-SGIYCGPLRLLAWEVAKRLNKAN--- 125 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~-~viv~apTGsGKT~~~~~~l~---~~---~-~~li~~P~r~La~q~~~~l~~~g--- 125 (564)
|+. |+++|+ ++|.+. .|+ ++++.+|||||||.++..+++ .. . +.+|++|||+||.|+++.+.+++
T Consensus 13 G~~-PtpiQ~~~i~~il--~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFV--AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCC-CCHHHHHHHHHHH--cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 677 999999 999984 576 688889999999986533322 11 2 33567899999999998887432
Q ss_pred ------------------------CeeEEEeCccccc------cCCCceEEEcceecc--------------------cc
Q 008489 126 ------------------------VSCDLITGQEREE------VDGAKHRAVTVEMAD--------------------VV 155 (564)
Q Consensus 126 ------------------------~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------------------~l 155 (564)
+++..++|+.... ..+..|+++|++++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 5677788875432 235678899974431 15
Q ss_pred CcccEEEEccccccCCCCCcchH-HHHHhcc---Ccc--ceEEEccCCCch-HHHHHHHHc-CCce--EEEeecc-----
Q 008489 156 SDYDCAVIDEIQMLGCKTRGFSF-TRALLGI---CAN--ELHLCGDPAAVP-LIQQILQVT-GDDV--KVQSYER----- 220 (564)
Q Consensus 156 ~~~~~vViDEaH~~~~~~rg~~~-~~~ll~l---~~~--~~~l~~~~~~~~-~~~~l~~~~-g~~~--~v~~~~~----- 220 (564)
.++.++|+|||| .+. |+.- ...++.. ... ..+++..++|.+ .+.++.... .+.+ .+.....
T Consensus 170 ~~v~~LVLDEAD--Ld~--gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki 245 (844)
T TIGR02621 170 GQDALIVHDEAH--LEP--AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKI 245 (844)
T ss_pred ccceEEEEehhh--hcc--ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccce
Confidence 789999999999 333 5542 2333332 221 123444444443 222222221 1111 1111000
Q ss_pred --cCCCCCCC---cccc---ccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHH-----HHHHHHh
Q 008489 221 --LSPLVPLN---VPLG---SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT-----RQATRFN 286 (564)
Q Consensus 221 --~~~~~~~~---~~l~---~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~-----~~~~~F~ 286 (564)
..+..... ..+. .+.....+.+|||+ |++.++.+++.|.+.+. ..+||+|++.+|. .+++.|+
T Consensus 246 ~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 00000000 0011 11122446677777 89999999999987643 8999999999999 7788897
Q ss_pred C----CC-----CCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 287 D----AS-----SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 287 ~----~~-----g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
+ +. +..+|||||+++++||||+.++||++.. +.++|+||+||+||.|..
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a-----------P~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA-----------PFESMQQRFGRVNRFGEL 380 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCcceEEECCC-----------CHHHHHHHhcccCCCCCC
Confidence 5 11 2368999999999999999889988644 478999999999999874
No 72
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.1e-27 Score=230.48 Aligned_cols=315 Identities=17% Similarity=0.194 Sum_probs=219.2
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~-------~~~l 105 (564)
.|+++. |.+.|...+... ||..|+.+|+ +++.. .+|.++++.+++|+|||.++...+++. ..++
T Consensus 27 sfddm~-L~e~LLrgiy~y-----GFekPSaIQqraI~p~--i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qal 98 (397)
T KOG0327|consen 27 SFDDMN-LKESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQAL 98 (397)
T ss_pred hhhhcC-CCHHHHhHHHhh-----ccCCchHHHhcccccc--ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHH
Confidence 355554 788899999988 9999999999 77666 579999999999999999976555543 2568
Q ss_pred EEccHHHHHHHHHHHHHhc----CCeeEEEeCcccccc-------CCCceEEEcc----eecc----ccCcccEEEEccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREEV-------DGAKHRAVTV----EMAD----VVSDYDCAVIDEI 166 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~-------~~~~~i~~T~----e~~~----~l~~~~~vViDEa 166 (564)
+++|+|+||.|+.+....+ +..+..++|+..... ....+++.|| .|++ ....+.+.|+||+
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999999887755 456665666543321 2356677787 3332 2467999999999
Q ss_pred cccCCCCCcch--HHHHHhccCccceEEEccCCCc-hHHHHHHHH-cCCceEEEeecccCCC------------CCCCcc
Q 008489 167 QMLGCKTRGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQV-TGDDVKVQSYERLSPL------------VPLNVP 230 (564)
Q Consensus 167 H~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~-~g~~~~v~~~~~~~~~------------~~~~~~ 230 (564)
+++. .+|+. ..+++-.++.. +++.--+++. +-+..+.+. ..+...+..-+..-.+ +.+...
T Consensus 179 DEmL--s~gfkdqI~~if~~lp~~-vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~ 255 (397)
T KOG0327|consen 179 DEML--SRGFKDQIYDIFQELPSD-VQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDT 255 (397)
T ss_pred Hhhh--ccchHHHHHHHHHHcCcc-hhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccH
Confidence 9998 44665 23333333333 3333333333 223233322 2222222111000000 001112
Q ss_pred ccccccccCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-Cc
Q 008489 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NI 309 (564)
Q Consensus 231 l~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv 309 (564)
+..+.+...+.+++|++++.+..+...|...+. .+..+||.+.+.+|..+.+.|+. |..+|||.|+.+++|+|+ .+
T Consensus 256 l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~-~~s~~~~d~~q~~R~~~~~ef~~--gssrvlIttdl~argidv~~~ 332 (397)
T KOG0327|consen 256 LCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGF-TVSAIHGDMEQNERDTLMREFRS--GSSRVLITTDLLARGIDVQQV 332 (397)
T ss_pred HHHHHHhhhcceEEecchhhHHHHHHHHhhCCc-eEEEeecccchhhhhHHHHHhhc--CCceEEeeccccccccchhhc
Confidence 222223234445555599999999999977776 89999999999999999999999 999999999999999999 59
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-H---HHHHhhhCCCChhh
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPML 374 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-~---~~~~~~~~~~~~ei 374 (564)
..||+++. |....+|.||+||+||.|.+ |.++.+..++ . ..++++.+.+..|+
T Consensus 333 slvinydl---------P~~~~~yihR~gr~gr~grk---g~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 333 SLVVNYDL---------PARKENYIHRIGRAGRFGRK---GVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred ceeeeecc---------ccchhhhhhhcccccccCCC---ceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 99999999 66999999999999999998 9998886553 2 34444555554443
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=4.5e-27 Score=232.05 Aligned_cols=295 Identities=20% Similarity=0.190 Sum_probs=208.1
Q ss_pred HHHHHhcccCCCccccCCCCCC-ccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHH
Q 008489 43 VIIRSYCSGSGMKKFDFTDLTR-PHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAK 119 (564)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~-~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~ 119 (564)
..++++|++. ||+..+.. .|+ ++..+- ..+++|.|++|||+|||+++ +..|+..+-.|++.|+.+|...+.+
T Consensus 5 r~VreaLKK~----FGh~kFKs~LQE~A~~c~V-K~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 5 RKVREALKKL----FGHKKFKSRLQEQAINCIV-KRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHH----hCchhhcChHHHHHHHHHH-hccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHH
Confidence 3566777777 77777654 455 665553 46889999999999999998 7788888888999999999999999
Q ss_pred HHHhcCCeeEEEeCc------------cccccCCCceEEEcceeccc------------cCcccEEEEccccccCCCCCc
Q 008489 120 RLNKANVSCDLITGQ------------EREEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRG 175 (564)
Q Consensus 120 ~l~~~g~~~~~~~G~------------~~~~~~~~~~i~~T~e~~~~------------l~~~~~vViDEaH~~~~~~rg 175 (564)
.+..+.++|..+... -........+++.|||+... -..+.++|+||||+.+ +||
T Consensus 80 HL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS--QWG 157 (641)
T KOG0352|consen 80 HLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS--QWG 157 (641)
T ss_pred HHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh--hhc
Confidence 999888777655442 12233467789999987632 1668999999999998 899
Q ss_pred chHHHHH--hccCc----cce-EEEccCCCchHHHHHHHHcCCceEEEeecccCCC-------------CC----C----
Q 008489 176 FSFTRAL--LGICA----NEL-HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-------------VP----L---- 227 (564)
Q Consensus 176 ~~~~~~l--l~l~~----~~~-~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~-------------~~----~---- 227 (564)
+.+..-. ||-+. ..+ .-...++....-+++.....-.-+|..+..++-- +. .
T Consensus 158 HDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 158 HDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFS 237 (641)
T ss_pred cccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHH
Confidence 8864222 22111 111 1122223323333333322211222222111100 00 0
Q ss_pred Ccccc---ccccc---cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccc
Q 008489 228 NVPLG---SFSNI---QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (564)
Q Consensus 228 ~~~l~---~l~~~---~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~ 300 (564)
...+. ...+. ..|--||++ ||++|++++-.|...|. +...+|+||...+|.++.+.|-+ ++..||+||+.
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~--~~~PvI~AT~S 314 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMN--NEIPVIAATVS 314 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhc--CCCCEEEEEec
Confidence 00010 00111 123345555 99999999999998888 88999999999999999999999 99999999999
Q ss_pred cccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 301 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 301 ~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++||||-| |++||+++.++ +.+-|.|..|||||.|.. .+|-.+|+.+
T Consensus 315 FGMGVDKp~VRFViHW~~~q---------n~AgYYQESGRAGRDGk~---SyCRLYYsR~ 362 (641)
T KOG0352|consen 315 FGMGVDKPDVRFVIHWSPSQ---------NLAGYYQESGRAGRDGKR---SYCRLYYSRQ 362 (641)
T ss_pred cccccCCcceeEEEecCchh---------hhHHHHHhccccccCCCc---cceeeeeccc
Confidence 99999997 99999999954 999999999999999998 8998777754
No 74
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=1.6e-27 Score=245.31 Aligned_cols=297 Identities=15% Similarity=0.151 Sum_probs=215.9
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHc---CCCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES---SSSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~---~~~~li~~P~r~ 112 (564)
+-..+...++.. +|..++++|. +||.++ .+-++||++..|+|||+++ ++.+.. +...+|++|||+
T Consensus 32 l~r~vl~glrrn-----~f~~ptkiQaaAIP~~~--~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTRE 104 (980)
T KOG4284|consen 32 LWREVLLGLRRN-----AFALPTKIQAAAIPAIF--SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTRE 104 (980)
T ss_pred HHHHHHHHHHhh-----cccCCCchhhhhhhhhh--cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchh
Confidence 455667777777 8999999999 999995 4899999999999999995 333322 346799999999
Q ss_pred HHHHHHHHHHhc-----CCeeEEEeCccccc-----cCCCceEEEcceecc--------ccCcccEEEEccccccCCC-C
Q 008489 113 LAWEVAKRLNKA-----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK-T 173 (564)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~-~ 173 (564)
+|.|+.+.+.+. |.+|.+..|+.... ...++|++.||.... ...+++++|+|||+.+.+. .
T Consensus 105 iaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s 184 (980)
T KOG4284|consen 105 IAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES 184 (980)
T ss_pred hhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh
Confidence 999999988854 78999999986433 347889999995432 2488999999999999763 1
Q ss_pred CcchHHHHHhccCccceEE-EccCCCchHHHHHHHHcCCceEEEe------------ecccCCC-----CCCCccc----
Q 008489 174 RGFSFTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQS------------YERLSPL-----VPLNVPL---- 231 (564)
Q Consensus 174 rg~~~~~~ll~l~~~~~~l-~~~~~~~~~~~~l~~~~g~~~~v~~------------~~~~~~~-----~~~~~~l---- 231 (564)
.......++-.+++....+ +..+-+..+-..+.+...+...|.. |....+. +.+...+
T Consensus 185 fq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~ 264 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLT 264 (980)
T ss_pred HHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHH
Confidence 1122334444555544333 3333233333334444433222211 1111110 0111111
Q ss_pred cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-c
Q 008489 232 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (564)
Q Consensus 232 ~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v 309 (564)
..+..++-...+||+ ....|+.++..|...|. .|.++.|.|++.+|...++.++. -..+|||+||.-++|||-| |
T Consensus 265 ~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~-d~~~ISgaM~Q~~Rl~a~~~lr~--f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 265 HVFKSIPYVQALVFCDQISRAEPIATHLKSSGL-DVTFISGAMSQKDRLLAVDQLRA--FRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC-CeEEeccccchhHHHHHHHHhhh--ceEEEEEecchhhccCCcccc
Confidence 122344555677777 57889999999988877 89999999999999999999998 8899999999999999997 9
Q ss_pred cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 310 ~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..||+.|. |.+-..|.||+|||||+|.. |..+++..+.
T Consensus 342 NLVVNiD~---------p~d~eTY~HRIGRAgRFG~~---G~aVT~~~~~ 379 (980)
T KOG4284|consen 342 NLVVNIDA---------PADEETYFHRIGRAGRFGAH---GAAVTLLEDE 379 (980)
T ss_pred ceEEecCC---------CcchHHHHHHhhhccccccc---ceeEEEeccc
Confidence 99999999 77999999999999999987 8877775443
No 75
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=227.89 Aligned_cols=306 Identities=21% Similarity=0.237 Sum_probs=221.6
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCC----CEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSS----SGI 105 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~~----~~l 105 (564)
|..+. |+..+..++.+. ||..++++|+ .+|.+ +.+++++-.+-||||||.+++ +.|..+. +++
T Consensus 23 fqsmg-L~~~v~raI~kk-----g~~~ptpiqRKTipli--Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ral 94 (529)
T KOG0337|consen 23 FQSMG-LDYKVLRAIHKK-----GFNTPTPIQRKTIPLI--LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRAL 94 (529)
T ss_pred ccccC-CCHHHHHHHHHh-----hcCCCCchhcccccce--eeccccceeeecCCcchhhHHHHHHHHHhhcccccccee
Confidence 34443 788888999988 9999999999 99999 789999999999999999964 3344433 789
Q ss_pred EEccHHHHHHHHHHHHHhcC----CeeEEEeCccccc------cCCCceEEEcce--------eccccCcccEEEEcccc
Q 008489 106 YCGPLRLLAWEVAKRLNKAN----VSCDLITGQEREE------VDGAKHRAVTVE--------MADVVSDYDCAVIDEIQ 167 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~g----~~~~~~~G~~~~~------~~~~~~i~~T~e--------~~~~l~~~~~vViDEaH 167 (564)
++.|+|+||.|+.+.++++| ..+.+++|+.... ..+..++++||. |.-.|+.+.+||+||++
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 99999999999999999764 5666666754432 236778888983 33457899999999999
Q ss_pred ccCCCCCcch--HHHHHhccCccceEEEccCCCchHHHHHHHH-cCCceEEE--eecccCCC----------CCCCcccc
Q 008489 168 MLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQ--SYERLSPL----------VPLNVPLG 232 (564)
Q Consensus 168 ~~~~~~rg~~--~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~--~~~~~~~~----------~~~~~~l~ 232 (564)
.+... ||+ ...++-.++.....+..+.+--..+-.+.+. .-+...|. ...+.++. ......+.
T Consensus 175 rlfem--gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 175 RLFEM--GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred HHHhh--hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99865 655 5666666666554444443222222233322 11222222 00111110 01111111
Q ss_pred c-cccc-cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-
Q 008489 233 S-FSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (564)
Q Consensus 233 ~-l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip- 308 (564)
. +.+. .+..-++|. ++..++-+...+...+. .+..+||+|+++.|......|+. ++..++|.||++.+|+|||
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~-~~s~iysslD~~aRk~~~~~F~~--~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG-EGSDIYSSLDQEARKINGRDFRG--RKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCC-CccccccccChHhhhhccccccC--CccceEEEehhhhccCCCcc
Confidence 1 1111 223455555 88999999999999888 89999999999999999999999 8899999999999999999
Q ss_pred ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC-CCHHHHHh
Q 008489 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHK 365 (564)
Q Consensus 309 v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~-~~~~~~~~ 365 (564)
.+.||+++. |-+..-|.||.||+.|.|.. |..|.+.. ++.+++-.
T Consensus 330 ldnvinyd~---------p~~~klFvhRVgr~aragrt---g~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 330 LDNVINYDF---------PPDDKLFVHRVGRVARAGRT---GRAYSLVASTDDPYLLD 375 (529)
T ss_pred ccccccccC---------CCCCceEEEEecchhhcccc---ceEEEEEecccchhhhh
Confidence 999999999 66888999999999999987 99988843 44444433
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=3.1e-26 Score=255.76 Aligned_cols=293 Identities=20% Similarity=0.224 Sum_probs=218.9
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
||...+++-|. ++-.. +.|++++|..|||+||++++ +.+++..+-.|||.|+.+|...+...+.+.+++...+.+.
T Consensus 260 Fg~~~FR~~Q~eaI~~~--l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~ 337 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINAT--LSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSI 337 (941)
T ss_pred hccccCChhHHHHHHHH--HcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeecccc
Confidence 69999999999 88866 67999999999999999998 6778888889999999999999999998889999888876
Q ss_pred cccc----------c--CCCceEEEcceeccc----------cCc---ccEEEEccccccCCCCCcchHHHHH-------
Q 008489 135 EREE----------V--DGAKHRAVTVEMADV----------VSD---YDCAVIDEIQMLGCKTRGFSFTRAL------- 182 (564)
Q Consensus 135 ~~~~----------~--~~~~~i~~T~e~~~~----------l~~---~~~vViDEaH~~~~~~rg~~~~~~l------- 182 (564)
.... . ....++++|||+... +.. +..+||||||+.+ +||+.|..-.
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS--qWgHdFRp~Yk~l~~l~ 415 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS--QWGHDFRPSYKRLGLLR 415 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh--hhcccccHHHHHHHHHH
Confidence 4431 1 145678999976532 333 8899999999998 8898863221
Q ss_pred hccCccceEEEc--cCCCchHHHHHHHHcCC---ceEEEeecccCC-CCC-----CCccc---ccccccc-CCC-eEEEc
Q 008489 183 LGICANELHLCG--DPAAVPLIQQILQVTGD---DVKVQSYERLSP-LVP-----LNVPL---GSFSNIQ-TGD-CIVTF 246 (564)
Q Consensus 183 l~l~~~~~~l~~--~~~~~~~~~~l~~~~g~---~~~v~~~~~~~~-~~~-----~~~~l---~~l~~~~-~g~-~iv~~ 246 (564)
..... +.+++ .+++....++++...+- .+.-..+.|.+- +++ ..... ....... .+. ||.|.
T Consensus 416 ~~~~~--vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~ 493 (941)
T KOG0351|consen 416 IRFPG--VPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCL 493 (941)
T ss_pred hhCCC--CCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeC
Confidence 11222 33333 44455666666665543 222222222211 000 11111 1122222 233 44455
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccc
Q 008489 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVEL 325 (564)
Q Consensus 247 s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~ 325 (564)
++++|+.++..|++.+. ....+|+||++.+|..+.+.|.. ++.+|+|||=++|||||.| |+.||++.++|
T Consensus 494 sr~~ce~vs~~L~~~~~-~a~~YHAGl~~~~R~~Vq~~w~~--~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------ 564 (941)
T KOG0351|consen 494 SRKECEQVSAVLRSLGK-SAAFYHAGLPPKERETVQKAWMS--DKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------ 564 (941)
T ss_pred CcchHHHHHHHHHHhch-hhHhhhcCCCHHHHHHHHHHHhc--CCCeEEEEEeeccCCCCCCceeEEEECCCch------
Confidence 99999999999999986 89999999999999999999999 9999999999999999997 99999999965
Q ss_pred cccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCCC
Q 008489 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEP 370 (564)
Q Consensus 326 ~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~~ 370 (564)
|...|+|-+|||||.|.. ..|..++.. +...++.++...
T Consensus 565 ---s~E~YYQE~GRAGRDG~~---s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 565 ---SFEGYYQEAGRAGRDGLP---SSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred ---hHHHHHHhccccCcCCCc---ceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999987 888888764 445555565544
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.6e-25 Score=227.28 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=88.3
Q ss_pred CCCeEEEc--cHHHHHHHHHHHHHcCCCeEEEEc--------CCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 239 TGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVY--------GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 239 ~g~~iv~~--s~~~~~~l~~~L~~~~~~~v~~lh--------g~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
++..+++| .|..++.+.+.|.+.+......+. .||++.++.++++.|++ |+.+|||||+++|.|+|||
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEGLDIp 442 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEGLDIP 442 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--CCceEEEEcccccccCCCC
Confidence 33445555 499999999999988763222333 47999999999999999 9999999999999999998
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+|.||+|+..- |.--++||.||+||... |.++.|..++
T Consensus 443 ~vDlVifYEpvp---------SeIR~IQR~GRTGR~r~----Grv~vLvt~g 481 (542)
T COG1111 443 EVDLVIFYEPVP---------SEIRSIQRKGRTGRKRK----GRVVVLVTEG 481 (542)
T ss_pred cccEEEEecCCc---------HHHHHHHhhCccccCCC----CeEEEEEecC
Confidence 99999998733 88889999999999976 8988885544
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=4e-25 Score=228.88 Aligned_cols=254 Identities=16% Similarity=0.180 Sum_probs=159.5
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc--------CCeeEEEeCccccc
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE 138 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~--------g~~~~~~~G~~~~~ 138 (564)
+++.+...+..++++++|||||||.++...++. .++++|++|+++|+.|+++++.++ +..+..++|.....
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 84 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKD 84 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHH
Confidence 777776544457899999999999998665444 458899999999999999998753 45566667752110
Q ss_pred -------------------------cCCCce-EEEcceeccc----------------cCcccEEEEccccccCCCCCc-
Q 008489 139 -------------------------VDGAKH-RAVTVEMADV----------------VSDYDCAVIDEIQMLGCKTRG- 175 (564)
Q Consensus 139 -------------------------~~~~~~-i~~T~e~~~~----------------l~~~~~vViDEaH~~~~~~rg- 175 (564)
....+. +++||++++. +.+++++|+||+|.+......
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~ 164 (357)
T TIGR03158 85 IKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVG 164 (357)
T ss_pred HHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchh
Confidence 012344 4555666542 478999999999998743111
Q ss_pred ch---HHHHHhccCccceEEEccCCCch-HHHHHH-HH--cCCceEEE-ee-----------------------------
Q 008489 176 FS---FTRALLGICANELHLCGDPAAVP-LIQQIL-QV--TGDDVKVQ-SY----------------------------- 218 (564)
Q Consensus 176 ~~---~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~-~~--~g~~~~v~-~~----------------------------- 218 (564)
.. ....++.......++++.+++.+ .+...+ .. .|..+.+. ..
T Consensus 165 ~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (357)
T TIGR03158 165 MLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELE 244 (357)
T ss_pred hhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEE
Confidence 11 11111111111245566566553 222322 22 22222110 00
Q ss_pred cccCCCCCCCccc----ccc----ccccCCCeEEEc-cHHHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHHhCC
Q 008489 219 ERLSPLVPLNVPL----GSF----SNIQTGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDA 288 (564)
Q Consensus 219 ~~~~~~~~~~~~l----~~l----~~~~~g~~iv~~-s~~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~F~~~ 288 (564)
... ........+ ..+ .+...+.++||+ |++.++.+++.|++.+ ...+..+||.+++.+|.+.
T Consensus 245 ~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------- 316 (357)
T TIGR03158 245 LIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------- 316 (357)
T ss_pred EEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh-------
Confidence 000 000000001 111 112345677777 8999999999998764 2468899999999977542
Q ss_pred CCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCC
Q 008489 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (564)
Q Consensus 289 ~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaG 341 (564)
++.+|||||+++++|||+|.+.||+. |.+.++|+||+||+|
T Consensus 317 -~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -MQFDILLGTSTVDVGVDFKRDWLIFS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -ccCCEEEEecHHhcccCCCCceEEEC-----------CCCHHHHhhhcccCC
Confidence 45689999999999999985677752 348999999999997
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=244.06 Aligned_cols=295 Identities=22% Similarity=0.248 Sum_probs=207.6
Q ss_pred cHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCC--CEEEEccHHHHH
Q 008489 42 DVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSS--SGIYCGPLRLLA 114 (564)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~--~~li~~P~r~La 114 (564)
+..+...+.+. |+..+..-|. ++..++ +|++++|+.|||||||.+++..++ +.+ ++||+.||++||
T Consensus 56 ~~~l~~~l~~~-----g~~~lY~HQ~~A~~~~~--~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa 128 (851)
T COG1205 56 DESLKSALVKA-----GIERLYSHQVDALRLIR--EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALA 128 (851)
T ss_pred hhHHHHHHHHh-----ccccccHHHHHHHHHHH--CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhH
Confidence 44556677777 7888888888 999885 489999999999999999866554 333 569999999999
Q ss_pred HHHHHHHHhc----C--CeeEEEeCccccc------cCCCceEEEcceeccc------------cCcccEEEEccccccC
Q 008489 115 WEVAKRLNKA----N--VSCDLITGQEREE------VDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLG 170 (564)
Q Consensus 115 ~q~~~~l~~~----g--~~~~~~~G~~~~~------~~~~~~i~~T~e~~~~------------l~~~~~vViDEaH~~~ 170 (564)
+++.++++++ | +.+...+|+.... ...++|++++|.|++. +.++++||+||+|.+.
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 9999999854 4 7788888976433 3466777888888864 3779999999999974
Q ss_pred CCCCcchHHHH---H---hccCccceEEEccCCCchHHHHHHHH-cCCceEEEeecccCCCCCC------------C---
Q 008489 171 CKTRGFSFTRA---L---LGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERLSPLVPL------------N--- 228 (564)
Q Consensus 171 ~~~rg~~~~~~---l---l~l~~~~~~l~~~~~~~~~~~~l~~~-~g~~~~v~~~~~~~~~~~~------------~--- 228 (564)
- -.|....-+ | +.......+++..++++....++... .+..+.+.......+.... .
T Consensus 209 G-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 209 G-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred c-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 2 224332211 1 22223456777777888777666643 3444433111111111000 0
Q ss_pred --ccc---ccccc--c-cCCCeEEEc-cHHHHHHHH----HHHHHcC---CCeEEEEcCCCCHHHHHHHHHHHhCCCCCe
Q 008489 229 --VPL---GSFSN--I-QTGDCIVTF-SRHAIYRLK----KAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEF 292 (564)
Q Consensus 229 --~~l---~~l~~--~-~~g~~iv~~-s~~~~~~l~----~~L~~~~---~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~ 292 (564)
... ..+.. . ..-..++|+ |++.++.+. +.+...+ ...+..++|++++++|..+...|+. |+.
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~--g~~ 365 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE--GEL 365 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc--CCc
Confidence 000 01100 1 233456666 899998886 3333333 1258999999999999999999999 999
Q ss_pred eEEEecccccccccc-CccEEEecCccccCCcccccc-CHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 293 DVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDL-TVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 293 ~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~-s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
.++++|++++-|+|| .++.||.++. |. |..+++||+|||||.+.. +.++.....
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~---------P~~s~~~~~Q~~GRaGR~~~~---~l~~~v~~~ 421 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGY---------PGVSVLSFRQRAGRAGRRGQE---SLVLVVLRS 421 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCC---------CCchHHHHHHhhhhccCCCCC---ceEEEEeCC
Confidence 999999999999999 5999999988 66 899999999999999964 555444333
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=5.6e-25 Score=214.16 Aligned_cols=314 Identities=18% Similarity=0.200 Sum_probs=220.9
Q ss_pred cccccccccCCCCCCCCCchhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHH
Q 008489 13 ALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKT 91 (564)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT 91 (564)
+-|.+.-.+.....|..+.... .......++.. |.+..+++.|. ++... |.+++++++.|||.||+
T Consensus 57 dag~~~eyd~spaawdkd~fpw-------s~e~~~ilk~~----f~lekfrplq~~ain~~--ma~ed~~lil~tgggks 123 (695)
T KOG0353|consen 57 DAGASNEYDRSPAAWDKDDFPW-------SDEAKDILKEQ----FHLEKFRPLQLAAINAT--MAGEDAFLILPTGGGKS 123 (695)
T ss_pred cccccccccCCccccccCCCCC-------chHHHHHHHHH----hhHHhcChhHHHHhhhh--hccCceEEEEeCCCccc
Confidence 3334444444445576655433 33445555544 57889999999 88887 77999999999999999
Q ss_pred HHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc------------cCCCceEEEcceeccc----
Q 008489 92 HQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMADV---- 154 (564)
Q Consensus 92 ~~~-~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~------------~~~~~~i~~T~e~~~~---- 154 (564)
+++ +.+|..+|-+++++|+..|...+.-.++.+|+....+....... ...-..+++|||....
T Consensus 124 lcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 124 LCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred hhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 997 78899999999999999999999999999999877665432221 1234678999975531
Q ss_pred ---------cCcccEEEEccccccCCCCCcchHHH--HHhccCcc---ceEEEccCCC--c---hHHHHHHHHcCCceEE
Q 008489 155 ---------VSDYDCAVIDEIQMLGCKTRGFSFTR--ALLGICAN---ELHLCGDPAA--V---PLIQQILQVTGDDVKV 215 (564)
Q Consensus 155 ---------l~~~~~vViDEaH~~~~~~rg~~~~~--~ll~l~~~---~~~l~~~~~~--~---~~~~~l~~~~g~~~~v 215 (564)
...+.+|-|||+|+.+ +||+.+.. -.+++.++ ...++|.+++ . +..++++-.... +.+
T Consensus 204 mnkleka~~~~~~~~iaidevhccs--qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~-~tf 280 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVHCCS--QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA-FTF 280 (695)
T ss_pred HHHHHHHhhcceeEEEeecceeehh--hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-hee
Confidence 2668999999999998 88887531 12333322 2233443322 2 222333221111 111
Q ss_pred E-eeccc----------CCCCCC-Cccccccccc--cCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHH
Q 008489 216 Q-SYERL----------SPLVPL-NVPLGSFSNI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 281 (564)
Q Consensus 216 ~-~~~~~----------~~~~~~-~~~l~~l~~~--~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~ 281 (564)
. .+.|+ ...+.. +...+.+..- ....+|.|||+++++.++..|+..|. ....+|+.|.|++|...
T Consensus 281 ~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi-~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 281 RAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI-HAGAYHANLEPEDKSGA 359 (695)
T ss_pred ecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc-cccccccccCccccccc
Confidence 1 11111 111111 1111222211 23457888899999999999999988 89999999999999999
Q ss_pred HHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHh-------------------------
Q 008489 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ------------------------- 335 (564)
Q Consensus 282 ~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Q------------------------- 335 (564)
-+.|.. |++.|+|||-+++||||-| |++||+..++| |..+|.|
T Consensus 360 hq~w~a--~eiqvivatvafgmgidkpdvrfvihhsl~k---------sienyyqasarillrmtkqknksdtggstqin 428 (695)
T KOG0353|consen 360 HQGWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSLPK---------SIENYYQASARILLRMTKQKNKSDTGGSTQIN 428 (695)
T ss_pred cccccc--cceEEEEEEeeecccCCCCCeeEEEecccch---------hHHHHHHHHHHHHHHHhhhcccccCCCcceee
Confidence 999999 9999999999999999998 99999999965 9999999
Q ss_pred ------------------hhccCCCCCCCCCcEEEEEecC
Q 008489 336 ------------------IAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 336 ------------------r~GRaGR~g~~~~~G~~~~l~~ 357 (564)
..|||||.+.. ..|+.+|.
T Consensus 429 ilevctnfkiffavfsekesgragrd~~~---a~cilyy~ 465 (695)
T KOG0353|consen 429 ILEVCTNFKIFFAVFSEKESGRAGRDDMK---ADCILYYG 465 (695)
T ss_pred hhhhhccceeeeeeecchhccccccCCCc---ccEEEEec
Confidence 78999999987 77776654
No 81
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=4.9e-24 Score=251.65 Aligned_cols=275 Identities=15% Similarity=0.119 Sum_probs=175.0
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHH---HcCCCEEEEccHHHHHHHHHHHHHhc------C
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRL---ESSSSGIYCGPLRLLAWEVAKRLNKA------N 125 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l---~~~~~~li~~P~r~La~q~~~~l~~~------g 125 (564)
+|+ .|+++|+ ++|.+ +.+++++++||||||||+.+ +..+ .++.+++|++||++|+.|+++++..+ +
T Consensus 76 ~G~-~pt~iQ~~~i~~i--l~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRI--LRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred hCC-CCCHHHHHHHHHH--HcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 488 6999999 99999 66999999999999999953 2222 23458999999999999999999863 4
Q ss_pred CeeEEEeCccccc----------cCCCceEEEcceeccc------cCcccEEEEccccccCCCC---------CcchH--
Q 008489 126 VSCDLITGQEREE----------VDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKT---------RGFSF-- 178 (564)
Q Consensus 126 ~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~------l~~~~~vViDEaH~~~~~~---------rg~~~-- 178 (564)
+.+..++|+.... ..+..++++||+.+.. ..+++++||||||+++... .|+.-
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~ 232 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEI 232 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHH
Confidence 5556677754321 1246899999975532 1568999999999997421 13321
Q ss_pred HH-H--Hh-----------------------ccCccceEEEccCCCch---HHHHHHHHcCCceEEEeecccCCCCC---
Q 008489 179 TR-A--LL-----------------------GICANELHLCGDPAAVP---LIQQILQVTGDDVKVQSYERLSPLVP--- 226 (564)
Q Consensus 179 ~~-~--ll-----------------------~l~~~~~~l~~~~~~~~---~~~~l~~~~g~~~~v~~~~~~~~~~~--- 226 (564)
.. + ++ .+......++..+++.+ ....++. +...+..-.....+..
T Consensus 233 ~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~---~~l~f~v~~~~~~lr~i~~ 309 (1638)
T PRK14701 233 IEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR---ELLGFEVGSGRSALRNIVD 309 (1638)
T ss_pred HHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh---cCeEEEecCCCCCCCCcEE
Confidence 11 0 11 11122222232333332 2222322 1111111000000000
Q ss_pred ---------CCccccccccccCCCeEEEc-cHHH---HHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee
Q 008489 227 ---------LNVPLGSFSNIQTGDCIVTF-SRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (564)
Q Consensus 227 ---------~~~~l~~l~~~~~g~~iv~~-s~~~---~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ 293 (564)
....+..+..... ..|||+ +++. ++++++.|.+.+. ++..+||+ |...++.|++ |+.+
T Consensus 310 ~yi~~~~~~k~~L~~ll~~~g~-~gIVF~~t~~~~e~ae~la~~L~~~Gi-~a~~~h~~-----R~~~l~~F~~--G~~~ 380 (1638)
T PRK14701 310 VYLNPEKIIKEHVRELLKKLGK-GGLIFVPIDEGAEKAEEIEKYLLEDGF-KIELVSAK-----NKKGFDLFEE--GEID 380 (1638)
T ss_pred EEEECCHHHHHHHHHHHHhCCC-CeEEEEeccccchHHHHHHHHHHHCCC-eEEEecch-----HHHHHHHHHc--CCCC
Confidence 0111122233333 445555 6554 6899999999876 89999995 7899999999 9999
Q ss_pred EEEec----cccccccccC--ccEEEecCccccCCc-c-ccc-----cCHhhHHhhhccCCCCCCC
Q 008489 294 VLVAS----DAIGMGLNLN--ISRIIFSTMKKFDGV-E-LRD-----LTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 294 VlVaT----~~~~~Gldip--v~~VI~~~~~k~~~~-~-~~p-----~s~~~~~Qr~GRaGR~g~~ 346 (564)
||||| ++++||||+| |++|||+++++|.-. + ..+ .......++.|||||.|..
T Consensus 381 VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 381 YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 99999 5899999996 999999999985421 0 000 0123355667999999964
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.3e-23 Score=227.53 Aligned_cols=275 Identities=16% Similarity=0.119 Sum_probs=178.8
Q ss_pred CCCCCccc-cchHHHhcC-CceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEe
Q 008489 60 TDLTRPHT-WYPLARKKV-RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~-~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~ 132 (564)
..+++.|+ ++....... .+..+++.|||+|||++++..+.. .+++||++|+..|+.|+.+.+.++ ...++..+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~t 333 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFT 333 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 45788888 776664322 257899999999999998766544 357899999999999999999875 24566777
Q ss_pred CccccccC-CCceEEEcceecc--------------cc--CcccEEEEccccccCCCCCcchHHHHH--------hccCc
Q 008489 133 GQEREEVD-GAKHRAVTVEMAD--------------VV--SDYDCAVIDEIQMLGCKTRGFSFTRAL--------LGICA 187 (564)
Q Consensus 133 G~~~~~~~-~~~~i~~T~e~~~--------------~l--~~~~~vViDEaH~~~~~~rg~~~~~~l--------l~l~~ 187 (564)
|+...... ...++++|+.++. .+ ..+++||+||||++.. ..+..++ +||++
T Consensus 334 g~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RLGLTA 409 (732)
T TIGR00603 334 SDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKLGLTA 409 (732)
T ss_pred cCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEEEEee
Confidence 76544322 3678889986652 12 4689999999999853 2334333 33444
Q ss_pred cceEEEccCCCchHHHHHHHHcCC---------------ceEEEeecccCCCCC------------C-----------Cc
Q 008489 188 NELHLCGDPAAVPLIQQILQVTGD---------------DVKVQSYERLSPLVP------------L-----------NV 229 (564)
Q Consensus 188 ~~~~l~~~~~~~~~~~~l~~~~g~---------------~~~v~~~~~~~~~~~------------~-----------~~ 229 (564)
+..+--+ ....+....|. -.++..+....++.. . ..
T Consensus 410 TP~ReD~------~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~ 483 (732)
T TIGR00603 410 TLVREDD------KITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFR 483 (732)
T ss_pred cCcccCC------chhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHH
Confidence 3322111 11111111111 111111111111110 0 00
Q ss_pred ccccccc-c--cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccc
Q 008489 230 PLGSFSN-I--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (564)
Q Consensus 230 ~l~~l~~-~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gl 305 (564)
.+..+.+ . ....+|||+ +...+..+++.| ++..+||++++.+|..+++.|+.+ +..++||+|+++++|+
T Consensus 484 ~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------~~~~I~G~ts~~ER~~il~~Fr~~-~~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 484 ACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------GKPFIYGPTSQQERMQILQNFQHN-PKVNTIFLSKVGDTSI 556 (732)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------CCceEECCCCHHHHHHHHHHHHhC-CCccEEEEeccccccc
Confidence 0011111 1 234566666 577788787776 356789999999999999999861 4789999999999999
Q ss_pred ccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCC----cEEEEEecCCC
Q 008489 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP----VGEVTCLDSED 359 (564)
Q Consensus 306 dip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~----~G~~~~l~~~~ 359 (564)
|+| +++||+++.+ .-|..+|+||+||++|.+++.. ...+|.+.+.+
T Consensus 557 DlP~a~vvI~~s~~--------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 557 DLPEANVLIQISSH--------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred CCCCCCEEEEeCCC--------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 998 9999998762 1289999999999999987622 24457776654
No 83
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=2.3e-23 Score=238.04 Aligned_cols=105 Identities=23% Similarity=0.324 Sum_probs=92.0
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCC--------CCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~--------l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
..+.+|||+ +++.++.+.+.|...+. .+..+||. +++.+|..+++.|++ |+.+|||||+++++|+|+|
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~-~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGI-KAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCC-ceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCcc
Confidence 445677777 79999999999977666 78888876 999999999999999 8899999999999999998
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+++||+++. +.+...++||+||+||.|+ |.+|.+..+
T Consensus 441 ~~~~VI~yd~---------~~s~~r~iQR~GR~gR~~~----~~v~~l~~~ 478 (773)
T PRK13766 441 SVDLVIFYEP---------VPSEIRSIQRKGRTGRQEE----GRVVVLIAK 478 (773)
T ss_pred cCCEEEEeCC---------CCCHHHHHHHhcccCcCCC----CEEEEEEeC
Confidence 999999998 5699999999999999987 788777543
No 84
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=8.4e-24 Score=244.80 Aligned_cols=267 Identities=18% Similarity=0.183 Sum_probs=171.1
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---H-HcCCCEEEEccHHHHHHHHHHHHHhc----CCe
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVS 127 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l-~~~~~~li~~P~r~La~q~~~~l~~~----g~~ 127 (564)
.|+ .|+++|. |+|.+ +.+++++++||||||||+.++.. + .++++++|++|||+||.|+++++.++ ++.
T Consensus 77 ~G~-~pt~iQ~~~i~~i--l~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRL--LLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred cCC-CCcHHHHHHHHHH--HCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 466 8999999 99998 67999999999999999764321 2 23468999999999999999999965 456
Q ss_pred eEEEeCccc------c------ccCCCceEEEcceecc----c--cCcccEEEEccccccCCCCC---------cch---
Q 008489 128 CDLITGQER------E------EVDGAKHRAVTVEMAD----V--VSDYDCAVIDEIQMLGCKTR---------GFS--- 177 (564)
Q Consensus 128 ~~~~~G~~~------~------~~~~~~~i~~T~e~~~----~--l~~~~~vViDEaH~~~~~~r---------g~~--- 177 (564)
+..+.|... . ...+..++++||+.+. . ..+++++||||||.+.+..+ |+.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 666665431 1 1134789999995442 2 24599999999999986432 342
Q ss_pred HHHHHhccCc------------------------cceEEEccCCCch-HHHH-HHHHcCCceEE----------Eeeccc
Q 008489 178 FTRALLGICA------------------------NELHLCGDPAAVP-LIQQ-ILQVTGDDVKV----------QSYERL 221 (564)
Q Consensus 178 ~~~~ll~l~~------------------------~~~~l~~~~~~~~-~~~~-l~~~~g~~~~v----------~~~~~~ 221 (564)
...++-.+.. ....++.+++..+ .... ++...- .+.+ ...+..
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-GFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-eEEecCcccccCCceEEEEE
Confidence 1112211111 2233343333322 1221 221110 0111 111111
Q ss_pred CCCCCCCccc-cccccccCCCeEEEc-cHHH---HHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEE
Q 008489 222 SPLVPLNVPL-GSFSNIQTGDCIVTF-SRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (564)
Q Consensus 222 ~~~~~~~~~l-~~l~~~~~g~~iv~~-s~~~---~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlV 296 (564)
.+ .....+ ..+....+ ..+||+ +++. ++.+++.|+..+. .+..+||++ + ..++.|++ |+.+|||
T Consensus 313 ~~--~k~~~L~~ll~~l~~-~~LIFv~t~~~~~~ae~l~~~L~~~gi-~v~~~hg~l--~---~~l~~F~~--G~~~VLV 381 (1176)
T PRK09401 313 DE--DSVEKLVELVKRLGD-GGLIFVPSDKGKEYAEELAEYLEDLGI-NAELAISGF--E---RKFEKFEE--GEVDVLV 381 (1176)
T ss_pred cc--cHHHHHHHHHHhcCC-CEEEEEecccChHHHHHHHHHHHHCCC-cEEEEeCcH--H---HHHHHHHC--CCCCEEE
Confidence 11 111112 22223333 455655 6555 9999999999876 899999999 1 34599999 9999999
Q ss_pred e----ccccccccccC--ccEEEecCccccCCccccccCHhhHHhhhccCC
Q 008489 297 A----SDAIGMGLNLN--ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (564)
Q Consensus 297 a----T~~~~~Gldip--v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaG 341 (564)
| ||+++||||+| |++|||++.++|-= .--....+.||.||+-
T Consensus 382 atas~tdv~aRGIDiP~~IryVI~y~vP~~~~---~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 382 GVASYYGVLVRGIDLPERIRYAIFYGVPKFKF---SLEEELAPPFLLLRLL 429 (1176)
T ss_pred EecCCCCceeecCCCCcceeEEEEeCCCCEEE---eccccccCHHHHHHHH
Confidence 9 69999999997 89999999977321 0113456788888874
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.2e-23 Score=231.68 Aligned_cols=331 Identities=16% Similarity=0.172 Sum_probs=227.8
Q ss_pred hhhhccccccccccc-CCCCCCCCCchhccCccccCcHHHHHhcccCCC-----------------ccccCCCCCCccc-
Q 008489 7 RNRKASALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGM-----------------KKFDFTDLTRPHT- 67 (564)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-----------------~~~~~~~~~~~q~- 67 (564)
-+++.++.+-...++ -++..|..........+..+...|.+...++.. ..|+|.. |+-|.
T Consensus 523 isrY~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeE-T~DQl~ 601 (1139)
T COG1197 523 ISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEE-TPDQLK 601 (1139)
T ss_pred HhhccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcC-CHHHHH
Confidence 345555555544444 667888888777777777777777766665533 1122222 33344
Q ss_pred cchHHHhc----CCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----cCCeeEEEeCcc
Q 008489 68 WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQE 135 (564)
Q Consensus 68 ~~p~~~~~----~~~~viv~apTGsGKT~~~~~----~l~~~~~~li~~P~r~La~q~~~~l~~----~g~~~~~~~G~~ 135 (564)
+|..+... .--+=+|||..|-|||.+|+. ++.+++++.+++||..||.|.++.|++ +++++..+..-.
T Consensus 602 AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~ 681 (1139)
T COG1197 602 AIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFR 681 (1139)
T ss_pred HHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccC
Confidence 55555331 234679999999999999754 455678899999999999999988874 466666665432
Q ss_pred ccc----------cCCCceEEEcceeccc---cCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCC-chH
Q 008489 136 REE----------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA-VPL 201 (564)
Q Consensus 136 ~~~----------~~~~~~i~~T~e~~~~---l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~-~~~ 201 (564)
... .....|++.|-..+.. ..+++++||||-|+.+.. .+--+.-.+..+++...++| +|.
T Consensus 682 s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~VDvLTLSATPIPR 755 (1139)
T COG1197 682 SAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVK------HKEKLKELRANVDVLTLSATPIPR 755 (1139)
T ss_pred CHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCcc------HHHHHHHHhccCcEEEeeCCCCcc
Confidence 211 1256788888877753 589999999999999765 22222222334444333322 221
Q ss_pred --H------HH---HHHHcCCceEEEeecccCCCCCCCccccccccccCCCeEEEc--cHHHHHHHHHHHHHc-CCCeEE
Q 008489 202 --I------QQ---ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF--SRHAIYRLKKAIESR-GKHLCS 267 (564)
Q Consensus 202 --~------~~---l~~~~g~~~~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~--s~~~~~~l~~~L~~~-~~~~v~ 267 (564)
- ++ +..-+.+.++|..|..+........+ .+.++..|.-+++. ..+++++++..|++. ...+++
T Consensus 756 TL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireA--I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~ 833 (1139)
T COG1197 756 TLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREA--ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIA 833 (1139)
T ss_pred hHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHH--HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEE
Confidence 1 11 11223346677776544332222222 23445556555555 479999999999886 345799
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 268 ~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
+.||.|+..+-..++..|.+ |+.+|||||.++|+||||| +..+|..+..+| -.++..|..||+||....
T Consensus 834 vaHGQM~e~eLE~vM~~F~~--g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f--------GLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 834 VAHGQMRERELEEVMLDFYN--GEYDVLVCTTIIETGIDIPNANTIIIERADKF--------GLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred EeecCCCHHHHHHHHHHHHc--CCCCEEEEeeeeecCcCCCCCceEEEeccccc--------cHHHHHHhccccCCccce
Confidence 99999999999999999999 9999999999999999998 999997776554 599999999999999987
Q ss_pred CCcEEEEEecCCC
Q 008489 347 FPVGEVTCLDSED 359 (564)
Q Consensus 347 ~~~G~~~~l~~~~ 359 (564)
|+||.+++.+
T Consensus 904 ---AYAYfl~p~~ 913 (1139)
T COG1197 904 ---AYAYFLYPPQ 913 (1139)
T ss_pred ---EEEEEeecCc
Confidence 9999999864
No 86
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=4.3e-23 Score=222.66 Aligned_cols=330 Identities=22% Similarity=0.230 Sum_probs=228.8
Q ss_pred cCccccCcHHH-HHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HH-HHcCCCEEEE
Q 008489 35 IGAFASVDVII-RSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SR-LESSSSGIYC 107 (564)
Q Consensus 35 ~~~~~~l~~~l-~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~-l~~~~~~li~ 107 (564)
+.....+++.+ ..+.+.. |+..+...|. .+..-+.+.+++.|...||+.|||+++- +. |.....++.+
T Consensus 201 ~~~a~~~~~k~~~~~~~~k-----gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~lli 275 (1008)
T KOG0950|consen 201 FGFAKRLPTKVSHLYAKDK-----GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLI 275 (1008)
T ss_pred hhhhhcCchHHHHHHHHhh-----hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEe
Confidence 33333344433 3444555 8888888888 4433343689999999999999999972 22 2344567888
Q ss_pred ccHHHHHHHHHHHHHhc----CCeeEEEeCccccc--cCCCceEEEcceeccc----------cCcccEEEEccccccCC
Q 008489 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQEREE--VDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~--~~~~~~i~~T~e~~~~----------l~~~~~vViDEaH~~~~ 171 (564)
.|..+.+.+-...+..+ |+.+....|..... .....+.+||.|+.+. +..+++|||||.|++.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 88888888777777644 66665555543322 2356678999988753 47799999999999999
Q ss_pred CCCcchHH----HHHhccCccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCCCC------------ccccccc
Q 008489 172 KTRGFSFT----RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN------------VPLGSFS 235 (564)
Q Consensus 172 ~~rg~~~~----~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~~------------~~l~~l~ 235 (564)
..||.... .++.......++++|+++++++...+..|....+.... .|+.++.... ..+..+.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~-fRPv~L~E~ik~G~~i~~~~r~~~lr~ia 434 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTR-FRPVPLKEYIKPGSLIYESSRNKVLREIA 434 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecc-cCcccchhccCCCcccccchhhHHHHHhh
Confidence 99998864 44444445568899999999998888887664332222 2333332110 0000000
Q ss_pred ---------------------cccCCC-eEEEc-cHHHHHHHHHHHHHc-------------------------------
Q 008489 236 ---------------------NIQTGD-CIVTF-SRHAIYRLKKAIESR------------------------------- 261 (564)
Q Consensus 236 ---------------------~~~~g~-~iv~~-s~~~~~~l~~~L~~~------------------------------- 261 (564)
-...+. +++|+ +++.|+.++..+...
T Consensus 435 ~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 435 NLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 012333 77777 788888776544321
Q ss_pred ------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHh
Q 008489 262 ------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (564)
Q Consensus 262 ------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Q 335 (564)
...+++++|+|++.++|+.+...|+. |...|++||+.+..|+|+|+++||.-.+ ++. ....+..+|+|
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g---~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRAP-YVG---REFLTRLEYKQ 588 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeCC-ccc---cchhhhhhHHh
Confidence 12368999999999999999999999 9999999999999999999999986544 222 23568999999
Q ss_pred hhccCCCCCCCCCcEEEEEe-cCCCHHHHHhhhCCCChhhhhc
Q 008489 336 IAGRAGRYGSKFPVGEVTCL-DSEDLPLLHKSLLEPSPMLESA 377 (564)
Q Consensus 336 r~GRaGR~g~~~~~G~~~~l-~~~~~~~~~~~~~~~~~ei~~~ 377 (564)
++|||||.|-+ ..|.++.. ...+...+.+++..+.+.....
T Consensus 589 M~GRAGR~gid-T~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~ 630 (1008)
T KOG0950|consen 589 MVGRAGRTGID-TLGDSILIIKSSEKKRVRELVNSPLKPLNSC 630 (1008)
T ss_pred hhhhhhhcccc-cCcceEEEeeccchhHHHHHHhccccccccc
Confidence 99999999975 56765544 4455556667888777765543
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.4e-22 Score=214.33 Aligned_cols=278 Identities=21% Similarity=0.271 Sum_probs=188.4
Q ss_pred CCCCccc-cchHHHhc-C---CceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCe
Q 008489 61 DLTRPHT-WYPLARKK-V---RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~-~---~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~----~g~~ 127 (564)
.+|.-|+ ++..+... . .-+=+++|+.|||||.+|+.++ ..+.++...+||-.||.|.++.+.+ +|+.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~ 341 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIR 341 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCe
Confidence 3555665 55444331 1 2345899999999999974443 4556899999999999999998874 5999
Q ss_pred eEEEeCccccc----------cCCCceEEEcceecc---ccCcccEEEEccccccCCCCCcchHHHHHhccCcc-ceEEE
Q 008489 128 CDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLC 193 (564)
Q Consensus 128 ~~~~~G~~~~~----------~~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~-~~~l~ 193 (564)
+.+++|..... ....+++|.|-..+. ...++.++|+||-|..... .+..+.-... ..++.
T Consensus 342 V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~------QR~~L~~KG~~~Ph~L 415 (677)
T COG1200 342 VALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVH------QRLALREKGEQNPHVL 415 (677)
T ss_pred EEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHH------HHHHHHHhCCCCCcEE
Confidence 99999965442 224678888876553 3689999999999998765 3333333333 33444
Q ss_pred ccCCCchHHHHHH-HHcCCceEEEeecccC-----------CCCCCCcccccc-ccccCCCeE-EEc-----c----HHH
Q 008489 194 GDPAAVPLIQQIL-QVTGDDVKVQSYERLS-----------PLVPLNVPLGSF-SNIQTGDCI-VTF-----S----RHA 250 (564)
Q Consensus 194 ~~~~~~~~~~~l~-~~~g~~~~v~~~~~~~-----------~~~~~~~~l~~l-~~~~~g~~i-v~~-----s----~~~ 250 (564)
.++++ |+.+.++ ...|+ ..++...... +.+.....+..+ .++.+|.-+ +++ | -+.
T Consensus 416 vMTAT-PIPRTLAlt~fgD-ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 416 VMTAT-PIPRTLALTAFGD-LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred EEeCC-CchHHHHHHHhcc-ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 44322 3333443 33343 2222211110 111111111111 122344433 233 2 145
Q ss_pred HHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCcccccc
Q 008489 251 IYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDL 328 (564)
Q Consensus 251 ~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~ 328 (564)
+.+++..|... +..++..+||.|+++++.++++.|++ |+.+|||||.++|.|||+| ....|..+..+|
T Consensus 494 a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AERF-------- 563 (677)
T COG1200 494 AEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAERF-------- 563 (677)
T ss_pred HHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhhh--------
Confidence 77788888754 34569999999999999999999999 9999999999999999998 888888777554
Q ss_pred CHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 329 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 329 s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
-.++..|-.||+||.+.. ++|+.++...
T Consensus 564 GLaQLHQLRGRVGRG~~q---SyC~Ll~~~~ 591 (677)
T COG1200 564 GLAQLHQLRGRVGRGDLQ---SYCVLLYKPP 591 (677)
T ss_pred hHHHHHHhccccCCCCcc---eEEEEEeCCC
Confidence 599999999999999988 9999998765
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.7e-22 Score=216.70 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc-------
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS------- 310 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~------- 310 (564)
..++||+ |.+.++.+++.|.+.+. .+..+||+++..++. +..|.. +...|+||||++++|+||+ ..
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~~~rE~~--ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLREAGL-PHQVLNAKQDAEEAA--IVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCcHHHHHH--HHHHcC--CCCcEEEEccchhcccCcCCccchhhcCC
Confidence 4466666 89999999999999876 899999997655444 444554 3446999999999999996 43
Q ss_pred -EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH
Q 008489 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363 (564)
Q Consensus 311 -~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~ 363 (564)
+||+++. |.|...|.||+||+||.|.. |.++.+.+.+-+.+
T Consensus 549 LhVI~~d~---------P~s~r~y~hr~GRTGRqG~~---G~s~~~is~eD~l~ 590 (656)
T PRK12898 549 LHVILTER---------HDSARIDRQLAGRCGRQGDP---GSYEAILSLEDDLL 590 (656)
T ss_pred CEEEEcCC---------CCCHHHHHHhcccccCCCCC---eEEEEEechhHHHH
Confidence 8999998 66999999999999999987 99988876543343
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=216.15 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=91.4
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc---C-cc---
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL---N-IS--- 310 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi---p-v~--- 310 (564)
...++||+ |.+.++.++..|.+.+. .+..+||+++..++..+...+.. | +|+||||++++|+|| | |.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi-~~~~L~~~~~~~e~~~i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGI-PHNLLNAKNAAKEAQIIAEAGQK--G--AVTVATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCccHHHHHHHHHcCCC--C--eEEEEccchhcCcCCCccccccccc
Confidence 34566666 89999999999999876 89999999998888877777765 5 699999999999999 5 88
Q ss_pred --EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH
Q 008489 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363 (564)
Q Consensus 311 --~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~ 363 (564)
+||+++. |.|...|.||+||+||.|.. |.+..+.+.+-+.+
T Consensus 503 GL~VI~~d~---------p~s~r~y~qr~GRtGR~G~~---G~s~~~is~eD~l~ 545 (790)
T PRK09200 503 GLAVIGTER---------MESRRVDLQLRGRSGRQGDP---GSSQFFISLEDDLL 545 (790)
T ss_pred CcEEEeccC---------CCCHHHHHHhhccccCCCCC---eeEEEEEcchHHHH
Confidence 9999998 66999999999999999987 98887766443333
No 90
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=216.75 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=83.5
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCC--eEEEE--------cCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKH--LCSIV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~--~v~~l--------hg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip- 308 (564)
..|+|. +|+.+..+.+.|.+.-.. +...+ -.+|++.++.++++.|++ |+.+|||||+++|.|+||+
T Consensus 415 R~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~EEGLDI~e 492 (746)
T KOG0354|consen 415 RTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVAEEGLDIGE 492 (746)
T ss_pred cEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecchhccCCccc
Confidence 355555 899999999999842111 11111 147999999999999999 9999999999999999998
Q ss_pred ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 309 v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
++.||-|+... ++-..+||.|| ||... |.|+.+...
T Consensus 493 c~lVIcYd~~s---------npIrmIQrrGR-gRa~n----s~~vll~t~ 528 (746)
T KOG0354|consen 493 CNLVICYDYSS---------NPIRMVQRRGR-GRARN----SKCVLLTTG 528 (746)
T ss_pred ccEEEEecCCc---------cHHHHHHHhcc-ccccC----CeEEEEEcc
Confidence 99999998843 78999999999 99987 898888763
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.89 E-value=1.5e-21 Score=217.23 Aligned_cols=290 Identities=16% Similarity=0.161 Sum_probs=178.0
Q ss_pred CCCCCccc-cchHHHhc-CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cCCeeEEEe
Q 008489 60 TDLTRPHT-WYPLARKK-VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLIT 132 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~-~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~-~g~~~~~~~ 132 (564)
..+++.|+ ++..+... .++++++.||||||||.+++..+ ..+++++|++|+++|+.|+++++++ +|..+..++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~ 222 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLH 222 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35888888 88887542 35789999999999999975543 3456899999999999999999986 688899888
Q ss_pred Cccccc----------cCCCceEEEcc-eeccccCcccEEEEccccccCCCC-CcchH--HHHH--hccCccceEEEccC
Q 008489 133 GQEREE----------VDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKT-RGFSF--TRAL--LGICANELHLCGDP 196 (564)
Q Consensus 133 G~~~~~----------~~~~~~i~~T~-e~~~~l~~~~~vViDEaH~~~~~~-rg~~~--~~~l--l~l~~~~~~l~~~~ 196 (564)
|+.... .....++++|+ ..+..+.++++|||||+|..+..+ .+..+ .++. .........+.++
T Consensus 223 s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~S- 301 (679)
T PRK05580 223 SGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGS- 301 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEc-
Confidence 864321 12467888887 344557899999999999875432 12211 1211 1111222222332
Q ss_pred CCchHHHHHHHH-cCC----------------ceEEEeecc---cCCCCCCCccc-ccccc-ccCC-CeEEE--------
Q 008489 197 AAVPLIQQILQV-TGD----------------DVKVQSYER---LSPLVPLNVPL-GSFSN-IQTG-DCIVT-------- 245 (564)
Q Consensus 197 ~~~~~~~~l~~~-~g~----------------~~~v~~~~~---~~~~~~~~~~l-~~l~~-~~~g-~~iv~-------- 245 (564)
++.. .+.+... .|. .+.+..... ..........+ ..+.+ +..| .+++|
T Consensus 302 ATps-~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~ 380 (679)
T PRK05580 302 ATPS-LESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAP 380 (679)
T ss_pred CCCC-HHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCC
Confidence 2221 1111111 111 011111000 00000000000 00000 0111 11111
Q ss_pred -----------------------------------------------------ccHHHHHHHHHHHHHc-CCCeEEEEcC
Q 008489 246 -----------------------------------------------------FSRHAIYRLKKAIESR-GKHLCSIVYG 271 (564)
Q Consensus 246 -----------------------------------------------------~s~~~~~~l~~~L~~~-~~~~v~~lhg 271 (564)
.....++.+++.|.+. ...++..+||
T Consensus 381 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~ 460 (679)
T PRK05580 381 FLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDR 460 (679)
T ss_pred ceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEec
Confidence 1223567788888775 3447999999
Q ss_pred CCC--HHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecC--ccccCCc-cccccCHhhHHhhhccCCCCCC
Q 008489 272 SLP--PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST--MKKFDGV-ELRDLTVPEVKQIAGRAGRYGS 345 (564)
Q Consensus 272 ~l~--~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~--~~k~~~~-~~~p~s~~~~~Qr~GRaGR~g~ 345 (564)
++. .+++..+++.|++ |+.+|||+|++++.|+|+| |+.|+..+ ..-+.++ +......+.+.|++|||||.+.
T Consensus 461 d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~ 538 (679)
T PRK05580 461 DTTRRKGALEQLLAQFAR--GEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK 538 (679)
T ss_pred cccccchhHHHHHHHHhc--CCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC
Confidence 986 4678899999999 9999999999999999997 99986443 3221111 1112246889999999999887
Q ss_pred CCCcEEEEEec
Q 008489 346 KFPVGEVTCLD 356 (564)
Q Consensus 346 ~~~~G~~~~l~ 356 (564)
. |.|+...
T Consensus 539 ~---g~viiqT 546 (679)
T PRK05580 539 P---GEVLIQT 546 (679)
T ss_pred C---CEEEEEe
Confidence 7 8888653
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.88 E-value=1e-21 Score=220.38 Aligned_cols=271 Identities=17% Similarity=0.161 Sum_probs=167.2
Q ss_pred CCCCCCccccchHHHhcCCceEEEEccCCccHHHHHHHHH---HcC---CCEEEEccHHHHHHHHHHHHHh-----c-CC
Q 008489 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRL---ESS---SSGIYCGPLRLLAWEVAKRLNK-----A-NV 126 (564)
Q Consensus 59 ~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l---~~~---~~~li~~P~r~La~q~~~~l~~-----~-g~ 126 (564)
...+++.|+....+ ..++..+++.+|||+|||.+++.+. ... .+++|..||+++++++++|+.+ + ..
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44678888844322 1356789999999999999986543 222 3667889999999999999874 1 24
Q ss_pred eeEEEeCccccc-----------------------------c----CCCceEEEcceec---------cccCc----ccE
Q 008489 127 SCDLITGQEREE-----------------------------V----DGAKHRAVTVEMA---------DVVSD----YDC 160 (564)
Q Consensus 127 ~~~~~~G~~~~~-----------------------------~----~~~~~i~~T~e~~---------~~l~~----~~~ 160 (564)
.+.+.+|..... . --++++|+|+..+ ..++. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 567777643200 0 0157889998332 11233 358
Q ss_pred EEEccccccCCCCCcchH-HHHHhccCccceEEEccCCCch--HHHHHHHHcCC--------ceEEE---------eec-
Q 008489 161 AVIDEIQMLGCKTRGFSF-TRALLGICANELHLCGDPAAVP--LIQQILQVTGD--------DVKVQ---------SYE- 219 (564)
Q Consensus 161 vViDEaH~~~~~~rg~~~-~~~ll~l~~~~~~l~~~~~~~~--~~~~l~~~~g~--------~~~v~---------~~~- 219 (564)
|||||+|.+... ...+ ...+--+.+....++.+++|.+ ..+.+....+. .|+.. .+.
T Consensus 443 vIiDEVHAyD~y--m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYDAY--MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCCHH--HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 999999998532 1111 1222112222223444445543 33444443221 11110 000
Q ss_pred --cc----CCCCC----C--------Ccccccccc-ccCC-CeEEEc-cHHHHHHHHHHHHHcC--CCeEEEEcCCCCHH
Q 008489 220 --RL----SPLVP----L--------NVPLGSFSN-IQTG-DCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPE 276 (564)
Q Consensus 220 --~~----~~~~~----~--------~~~l~~l~~-~~~g-~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~ 276 (564)
.. .+... . ...+..+.+ ...| .++||+ |++.++++++.|++.. ...+..+||.+++.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 00 00000 0 000111111 2333 444554 8999999999998764 23699999999999
Q ss_pred HHH----HHHHHH-hCCCCC---eeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCC
Q 008489 277 TRT----RQATRF-NDASSE---FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345 (564)
Q Consensus 277 ~R~----~~~~~F-~~~~g~---~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~ 345 (564)
+|. ++++.| ++ |+ .+|||||+++|+||||+++.+|.... +.+.++||+||+||.+.
T Consensus 601 dR~~~E~~vl~~fgk~--g~r~~~~ILVaTQViE~GLDId~DvlItdla-----------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKN--GKRNQGRILVATQVVEQSLDLDFDWLITQLC-----------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhc--CCcCCCeEEEECcchhheeecCCCeEEECCC-----------CHHHHHHHHhccCCCCC
Confidence 994 456778 44 44 47999999999999999998887544 57899999999999976
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.7e-21 Score=186.18 Aligned_cols=285 Identities=19% Similarity=0.219 Sum_probs=186.4
Q ss_pred CCCCCccc--cchHHHh-cCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHh-c-CCeeEE
Q 008489 60 TDLTRPHT--WYPLARK-KVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNK-A-NVSCDL 130 (564)
Q Consensus 60 ~~~~~~q~--~~p~~~~-~~~~~viv~apTGsGKT~~~~----~~l~~~~~~li~~P~r~La~q~~~~l~~-~-g~~~~~ 130 (564)
..+++.|+ +-..+.. .+.+++++.|-||+|||.... +.+.+++++.+..|+...+.+++.|++. + ++.+.+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 45777776 2222222 357889999999999999954 3445567888889999999999999995 3 688999
Q ss_pred EeCccccccCCCceEEEcc-eeccccCcccEEEEccccccCCCCCcchHHHHHhccCcc--ceEEEccCCCchHHHHHHH
Q 008489 131 ITGQEREEVDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN--ELHLCGDPAAVPLIQQILQ 207 (564)
Q Consensus 131 ~~G~~~~~~~~~~~i~~T~-e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~--~~~l~~~~~~~~~~~~l~~ 207 (564)
++|+...... ++++++|+ ..+.+-+.+|++||||+|-..-.+ ...+.-++-...+. ...++..+.+..+.+++..
T Consensus 176 Lyg~S~~~fr-~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 176 LYGDSDSYFR-APLVVATTHQLLRFKQAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred EecCCchhcc-ccEEEEehHHHHHHHhhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhh
Confidence 9999887766 88888888 556777899999999999873220 01111112111111 1122333333334444332
Q ss_pred HcCCceEEEeecccCCCCCC--------Ccc---------c-ccccc-cc-CCCeEEEc-cHHHHHHHHHHHH-HcCCCe
Q 008489 208 VTGDDVKVQSYERLSPLVPL--------NVP---------L-GSFSN-IQ-TGDCIVTF-SRHAIYRLKKAIE-SRGKHL 265 (564)
Q Consensus 208 ~~g~~~~v~~~~~~~~~~~~--------~~~---------l-~~l~~-~~-~g~~iv~~-s~~~~~~l~~~L~-~~~~~~ 265 (564)
..-..+.+-..+...|+..- .+. + ..+.+ .. ..-.++|+ +....++++..|+ +.+...
T Consensus 254 g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~ 333 (441)
T COG4098 254 GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKET 333 (441)
T ss_pred CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccc
Confidence 21111111111111122110 000 1 11111 12 23456666 7889999999994 455667
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCC
Q 008489 266 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (564)
Q Consensus 266 v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g 344 (564)
++.+|+. ...|.+..+.|++ |+.++|++|.++|+|+++| |+..|.-.-. +-.|.+.++|++||+||.-
T Consensus 334 i~~Vhs~--d~~R~EkV~~fR~--G~~~lLiTTTILERGVTfp~vdV~Vlgaeh-------~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 334 IASVHSE--DQHRKEKVEAFRD--GKITLLITTTILERGVTFPNVDVFVLGAEH-------RVFTESALVQIAGRVGRSL 402 (441)
T ss_pred eeeeecc--CccHHHHHHHHHc--CceEEEEEeehhhcccccccceEEEecCCc-------ccccHHHHHHHhhhccCCC
Confidence 7888985 4568899999999 9999999999999999998 8877654332 2358999999999999976
Q ss_pred CCCCcEEEEEecCC
Q 008489 345 SKFPVGEVTCLDSE 358 (564)
Q Consensus 345 ~~~~~G~~~~l~~~ 358 (564)
. ++.|.++.|...
T Consensus 403 ~-~PtGdv~FFH~G 415 (441)
T COG4098 403 E-RPTGDVLFFHYG 415 (441)
T ss_pred c-CCCCcEEEEecc
Confidence 5 467998888543
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.88 E-value=5.5e-22 Score=230.11 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=161.3
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---H-HcCCCEEEEccHHHHHHHHHHHHHhc----CCee
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVSC 128 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l-~~~~~~li~~P~r~La~q~~~~l~~~----g~~~ 128 (564)
....|+++|+ |+|.+ +.|++++++||||||||+.++.. + .++++++|++|||+||.|+++++.++ |+.+
T Consensus 75 ~g~~p~~iQ~~~i~~i--l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRV--LRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 3457999999 99988 67999999999999999854322 2 23568999999999999999999864 4433
Q ss_pred ---EEEeCccccc----------cCCCceEEEcceecc----ccC-cccEEEEccccccCCCCC---------cchH---
Q 008489 129 ---DLITGQEREE----------VDGAKHRAVTVEMAD----VVS-DYDCAVIDEIQMLGCKTR---------GFSF--- 178 (564)
Q Consensus 129 ---~~~~G~~~~~----------~~~~~~i~~T~e~~~----~l~-~~~~vViDEaH~~~~~~r---------g~~~--- 178 (564)
+.++|+.... ..+..++++||..+. .+. +++++||||||.+.+..+ |+.-
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 3456653221 124788999995442 223 799999999999987432 3321
Q ss_pred HHHH---------------------h-ccCcc-ceEEEccCCC-ch-HHH-HHHHHcCCceE----------EEeecccC
Q 008489 179 TRAL---------------------L-GICAN-ELHLCGDPAA-VP-LIQ-QILQVTGDDVK----------VQSYERLS 222 (564)
Q Consensus 179 ~~~l---------------------l-~l~~~-~~~l~~~~~~-~~-~~~-~l~~~~g~~~~----------v~~~~~~~ 222 (564)
..++ + .+... ...++..+++ .+ ... .+....- .+. +..++...
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-~~~v~~~~~~~r~I~~~~~~~ 311 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL-GFEVGGGSDTLRNVVDVYVED 311 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc-ceEecCccccccceEEEEEec
Confidence 1111 0 01111 1123222333 22 111 1211110 011 11111110
Q ss_pred CCCCCCccccccccccCCCeEEEc-cH---HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEe-
Q 008489 223 PLVPLNVPLGSFSNIQTGDCIVTF-SR---HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA- 297 (564)
Q Consensus 223 ~~~~~~~~l~~l~~~~~g~~iv~~-s~---~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa- 297 (564)
.. ........+.... +..|||+ ++ +.++++++.|++.+. ++..+||+++. ..++.|++ |+.+||||
T Consensus 312 ~~-~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~-~a~~lhg~~~~----~~l~~Fr~--G~~~vLVat 382 (1171)
T TIGR01054 312 ED-LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGV-KAVAYHATKPK----EDYEKFAE--GEIDVLIGV 382 (1171)
T ss_pred cc-HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCc-eEEEEeCCCCH----HHHHHHHc--CCCCEEEEe
Confidence 00 0111112223333 3455555 66 999999999998876 89999999974 68899999 99999999
Q ss_pred ---ccccccccccC--ccEEEecCcccc
Q 008489 298 ---SDAIGMGLNLN--ISRIIFSTMKKF 320 (564)
Q Consensus 298 ---T~~~~~Gldip--v~~VI~~~~~k~ 320 (564)
||++++|||+| |++|||++++++
T Consensus 383 a~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 383 ASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccccCcccccCCCCccccEEEEECCCCE
Confidence 59999999997 799999999985
No 95
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=4.8e-21 Score=209.41 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=84.0
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---------
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN--------- 308 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip--------- 308 (564)
...++||+ |.+.++.++..|.+.+. .+.++||.++..+|..+...|+. | .|+||||++++|+||+
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi-~~~~L~a~~~~~E~~ii~~ag~~--g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGI-PHNLLNAQNAAKEAQIIAEAGQK--G--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCCChHHHHHHHHHcCCC--C--eEEEEccccccccCCCCCccccccC
Confidence 44567776 89999999999998877 89999999999988877777766 5 6999999999999997
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+.+|++++.+ ..... .||+||+||.|.. |.+..+.+.+
T Consensus 499 GL~vIit~~~p---------s~rid-~qr~GRtGRqG~~---G~s~~~is~e 537 (762)
T TIGR03714 499 GLAVIGTERME---------NSRVD-LQLRGRSGRQGDP---GSSQFFVSLE 537 (762)
T ss_pred CeEEEEecCCC---------CcHHH-HHhhhcccCCCCc---eeEEEEEccc
Confidence 4566677663 24444 9999999999988 9888776644
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2.1e-21 Score=208.74 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=161.7
Q ss_pred EEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cCCeeEEEeCccccc----------cCCCceE
Q 008489 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREE----------VDGAKHR 145 (564)
Q Consensus 81 iv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~----------~~~~~~i 145 (564)
++.||||||||.+++..+ .++++++|++|+++|+.|+++++++ +|..+.+++|..... .....++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999999975443 3456899999999999999999985 688888888754321 1245677
Q ss_pred EEcc-eeccccCcccEEEEccccccCCCCC-cchH--HH--HHhccCccceEEEccCCCchHHHHHHHHcCCceEEEee-
Q 008489 146 AVTV-EMADVVSDYDCAVIDEIQMLGCKTR-GFSF--TR--ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY- 218 (564)
Q Consensus 146 ~~T~-e~~~~l~~~~~vViDEaH~~~~~~r-g~~~--~~--~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~- 218 (564)
++|. ..+..+.++++|||||+|..+..+. ++.+ .+ .+.+.......+.++ ++ +..+.+.......+.....
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~S-AT-Psles~~~~~~g~~~~~~l~ 158 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGS-AT-PSLESYHNAKQKAYRLLVLT 158 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEe-CC-CCHHHHHHHhcCCeEEeech
Confidence 7776 3445578999999999999864321 2221 11 111211122222232 23 2222222221111111110
Q ss_pred cccC--C--------CCC------CC-ccccccc-cccC-CCeEEEccH-------------------------------
Q 008489 219 ERLS--P--------LVP------LN-VPLGSFS-NIQT-GDCIVTFSR------------------------------- 248 (564)
Q Consensus 219 ~~~~--~--------~~~------~~-~~l~~l~-~~~~-g~~iv~~s~------------------------------- 248 (564)
.+.. + +.. .. ..+..+. .+.. +.+++|+.+
T Consensus 159 ~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~ 238 (505)
T TIGR00595 159 RRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKE 238 (505)
T ss_pred hhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCC
Confidence 0000 0 000 00 0011111 1122 234433211
Q ss_pred ------------------------------HHHHHHHHHHHHc-CCCeEEEEcCCCCHHHH--HHHHHHHhCCCCCeeEE
Q 008489 249 ------------------------------HAIYRLKKAIESR-GKHLCSIVYGSLPPETR--TRQATRFNDASSEFDVL 295 (564)
Q Consensus 249 ------------------------------~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R--~~~~~~F~~~~g~~~Vl 295 (564)
-.++++.+.|.+. +..++..+|++++...+ ..+++.|++ |+.+||
T Consensus 239 ~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~IL 316 (505)
T TIGR00595 239 GKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADIL 316 (505)
T ss_pred CeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEE
Confidence 1256677777765 34589999999987665 789999999 999999
Q ss_pred EeccccccccccC-ccEEE--ecCccccCCc-cccccCHhhHHhhhccCCCCCCCCCcEEEEEe
Q 008489 296 VASDAIGMGLNLN-ISRII--FSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355 (564)
Q Consensus 296 VaT~~~~~Gldip-v~~VI--~~~~~k~~~~-~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l 355 (564)
|+|++++.|+|+| |+.|+ +.|..-+.++ +-.....+.+.|++|||||.+.. |.++..
T Consensus 317 VgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~---g~viiq 377 (505)
T TIGR00595 317 IGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP---GQVIIQ 377 (505)
T ss_pred EeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC---CEEEEE
Confidence 9999999999998 99886 4443222111 11122568899999999998877 888744
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=2.5e-20 Score=202.65 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---cc----
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---IS---- 310 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~---- 310 (564)
+..++||+ |...++.+++.|.+.+. ....+||. ..+|...+..|.. +...|+||||++++|+||+ |.
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi-~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGI-PHNVLNAK--NHEREAEIIAQAG--RKGAVTIATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CeEEeeCC--hHHHHHHHHHhcC--CCceEEEEeccccCCcCCCccchhhcCC
Confidence 33456666 79999999999999887 78999998 7788999999998 7788999999999999994 44
Q ss_pred -EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 311 -~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+||+++. |.|...+.||.||+||.|.. |.+..+.+.+
T Consensus 480 l~VI~t~~---------p~s~ri~~q~~GRtGRqG~~---G~s~~~ls~e 517 (745)
T TIGR00963 480 LYVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFFLSLE 517 (745)
T ss_pred cEEEecCC---------CCcHHHHHHHhccccCCCCC---cceEEEEecc
Confidence 8999988 66999999999999999987 8876665544
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.87 E-value=3.4e-21 Score=204.55 Aligned_cols=267 Identities=19% Similarity=0.174 Sum_probs=180.6
Q ss_pred CCCCCCccc-cchHHHhc-C-CceEEEEccCCccHHHHHHHHHHcCC-CEEEEccHHHHHHHHHHHHHhc-CC--eeEEE
Q 008489 59 FTDLTRPHT-WYPLARKK-V-RKVILHVGPTNSGKTHQALSRLESSS-SGIYCGPLRLLAWEVAKRLNKA-NV--SCDLI 131 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~-~-~~~viv~apTGsGKT~~~~~~l~~~~-~~li~~P~r~La~q~~~~l~~~-g~--~~~~~ 131 (564)
...+++.|+ ++....+. . ++..+++.|||+|||..++..+..-+ +++|++|+++|+.|+++++... +. .++..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 456888888 66666321 0 77899999999999999988887654 4899999999999999888754 33 46777
Q ss_pred eCccccccCCCceEEEcceeccc-------c-CcccEEEEccccccCCCCCcchHH-----HH-HhccCccceEEEccCC
Q 008489 132 TGQEREEVDGAKHRAVTVEMADV-------V-SDYDCAVIDEIQMLGCKTRGFSFT-----RA-LLGICANELHLCGDPA 197 (564)
Q Consensus 132 ~G~~~~~~~~~~~i~~T~e~~~~-------l-~~~~~vViDEaH~~~~~~rg~~~~-----~~-ll~l~~~~~~l~~~~~ 197 (564)
.|+...... ..+.++|..++.. . .++++||+||||+...+ ....+. .. ++|++++..+.-+ .
T Consensus 114 ~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~~~~~~~LGLTATp~R~D~--~ 189 (442)
T COG1061 114 GGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELLSAAYPRLGLTATPEREDG--G 189 (442)
T ss_pred cCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhhhcccceeeeccCceeecC--C
Confidence 776666543 5688888744322 2 47999999999999754 111121 11 4667766443220 0
Q ss_pred CchHHHHHHHHc---------------CC--ceEEEeecc-cCCCCC--------C-C---------------c------
Q 008489 198 AVPLIQQILQVT---------------GD--DVKVQSYER-LSPLVP--------L-N---------------V------ 229 (564)
Q Consensus 198 ~~~~~~~l~~~~---------------g~--~~~v~~~~~-~~~~~~--------~-~---------------~------ 229 (564)
....+.... |. .+.+..... ...... . . .
T Consensus 190 ---~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (442)
T COG1061 190 ---RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIAS 266 (442)
T ss_pred ---chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcc
Confidence 111111111 11 111111110 000000 0 0 0
Q ss_pred --cc---cc-cccc-cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccc
Q 008489 230 --PL---GS-FSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301 (564)
Q Consensus 230 --~l---~~-l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~ 301 (564)
.+ .. +... ....+++|. +..++..++..+...+. +..+.|..+..+|.++++.|+. |.+++||++.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~--~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~vl 342 (442)
T COG1061 267 ERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI--VEAITGETPKEEREAILERFRT--GGIKVLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc--eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEeeec
Confidence 00 00 0111 133566666 68999999999976665 8899999999999999999999 779999999999
Q ss_pred ccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCC
Q 008489 302 GMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345 (564)
Q Consensus 302 ~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~ 345 (564)
..|+|+| ++.+|....+. |...|.||+||.-|...
T Consensus 343 ~EGvDiP~~~~~i~~~~t~---------S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 343 DEGVDIPDADVLIILRPTG---------SRRLFIQRLGRGLRPAE 378 (442)
T ss_pred cceecCCCCcEEEEeCCCC---------cHHHHHHHhhhhccCCC
Confidence 9999998 99999988754 99999999999999533
No 99
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.86 E-value=1.9e-22 Score=214.33 Aligned_cols=441 Identities=15% Similarity=0.085 Sum_probs=274.9
Q ss_pred hhccccccccccc-CCCCCCCCCchhccCccc--cCcHHHHHhcccCCCccccCCCCCCccccchHHHh--------cCC
Q 008489 9 RKASALGIPRILR-DNVEPFSLNSEKIIGAFA--SVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARK--------KVR 77 (564)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~q~~~p~~~~--------~~~ 77 (564)
.+.+...+++... .++.||..+...+-..-. ..........++...........+...+.+|.+.. ..+
T Consensus 314 ~~~~~s~i~wapP~anwn~w~A~nide~~la~~~~~s~~q~~~~~~~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn 393 (1282)
T KOG0921|consen 314 EICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMESISQRIMEKERFKRDEALDKITAQREELPVAQYRSEILQAVAEN 393 (1282)
T ss_pred hhccCCCCCCCCccccccccccccCcccccccccccCcccchhhhhhhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcC
Confidence 3456677788887 889999988765432211 11111111111110000111222222224444432 258
Q ss_pred ceEEEEccCCccHHHHHHHHHHcC----C-----CEEEEccHHHHHHHHHHHHHh-cCCeeEEEeCccccccC-----CC
Q 008489 78 KVILHVGPTNSGKTHQALSRLESS----S-----SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVD-----GA 142 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~----~-----~~li~~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~-----~~ 142 (564)
+.+++.+.||+|||+++.+.|+++ . .+.+++|||..|..+++++.. .+..++-..|+.++... ..
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg 473 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYG 473 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccc
Confidence 899999999999999998888764 2 457789999999999999983 34455555565555432 45
Q ss_pred ceEEEcceec-----cccCcccEEEEccccccCCCCCcchHHHHHhccCcc------ceEEEccCCCch--HHHHHH---
Q 008489 143 KHRAVTVEMA-----DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVP--LIQQIL--- 206 (564)
Q Consensus 143 ~~i~~T~e~~-----~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~------~~~l~~~~~~~~--~~~~l~--- 206 (564)
.+..||.+.+ ..+..+.++|+||+|++... +++++-+.+. .+++.-++++++ ++..++
T Consensus 474 ~i~fctvgvllr~~e~glrg~sh~i~deiherdv~------~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~ 547 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVD------TDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSI 547 (1282)
T ss_pred ceeeeccchhhhhhhhcccccccccchhhhhhccc------hHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccc
Confidence 6788998544 56799999999999999765 4444333321 112222222211 111111
Q ss_pred -------------------------HHcCCceEEEeecc----cCCCCCCCc----------------------------
Q 008489 207 -------------------------QVTGDDVKVQSYER----LSPLVPLNV---------------------------- 229 (564)
Q Consensus 207 -------------------------~~~g~~~~v~~~~~----~~~~~~~~~---------------------------- 229 (564)
...+.+.+...+.. ..+.+.+.+
T Consensus 548 p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f 627 (1282)
T KOG0921|consen 548 PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPF 627 (1282)
T ss_pred cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchh
Confidence 11222222222210 000000000
Q ss_pred -ccccc-----ccccCCCeEEEc-cHHHHHHHHHHHHHc------CCCeEEEEcCCCCHHHHHHHHHHHhC-CCCCeeEE
Q 008489 230 -PLGSF-----SNIQTGDCIVTF-SRHAIYRLKKAIESR------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVL 295 (564)
Q Consensus 230 -~l~~l-----~~~~~g~~iv~~-s~~~~~~l~~~L~~~------~~~~v~~lhg~l~~~~R~~~~~~F~~-~~g~~~Vl 295 (564)
.+..+ .+.-+|-+++|+ ....+..++..+... ....+.+.|+.++.. ++-+.|+. +.|..|+|
T Consensus 628 ~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~---eqrkvf~~~p~gv~kii 704 (1282)
T KOG0921|consen 628 GLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ---EQRKVFEPVPEGVTKII 704 (1282)
T ss_pred HHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH---hhhhccCcccccccccc
Confidence 00000 001245677777 688888888877543 234688999988877 55555665 45999999
Q ss_pred Eecccccccccc-CccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHh
Q 008489 296 VASDAIGMGLNL-NISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (564)
Q Consensus 296 VaT~~~~~Gldi-pv~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~ 365 (564)
++|+++++++++ ++.+||+.+..+ |... -+.|.|+.+..||.||+||..+ |.|+++++.- .|+.
T Consensus 705 ~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~----G~~f~lcs~a--rF~~ 778 (1282)
T KOG0921|consen 705 LSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP----GFCFHLCSRA--RFEA 778 (1282)
T ss_pred cccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc----cccccccHHH--HHHH
Confidence 999999999999 589999766543 1111 3678899999999999999998 9999998765 5666
Q ss_pred hhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhc
Q 008489 366 SLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 445 (564)
Q Consensus 366 ~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~ 445 (564)
+-....+++.+..+....+.++... -.++..++. ..+.+|+-.....+-..+..+++++.+..+|+.|+.++.+
T Consensus 779 l~~~~t~em~r~plhemalTikll~----l~SI~~fl~--kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l 852 (1282)
T KOG0921|consen 779 LEDHGTAEMFRTPLHEIALTIKLLR----LGSIGEFLG--KALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARL 852 (1282)
T ss_pred HHhcCcHhhhcCccHHHHhhHHHHH----hhhHHHHHh--hccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhc
Confidence 6667777777777666666655411 123444432 3456677777777777899999999999999999998888
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCccch
Q 008489 446 SPVDMNDDISSQGLTQFATNYSKKGIVQL 474 (564)
Q Consensus 446 ~P~~~~~~~~~~~l~~~~~~~~~~~~~~i 474 (564)
| ..|.+.+++.-.+...|-..++..
T Consensus 853 -~---iep~~~k~~~lg~~~g~~~~m~~~ 877 (1282)
T KOG0921|consen 853 -P---IEPRIGKMMILGTALGAGSVMCDV 877 (1282)
T ss_pred -c---Ccccccceeeechhhccchhhhhh
Confidence 8 567777777665555555555444
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=7.3e-20 Score=206.74 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=94.8
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEec
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~ 315 (564)
...++|||+ ++..+..+.+.|+...+..+..+||+|+..+|.+.++.|++++|..+|||||+++++|+|++ +++||++
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 345677777 79999999999965444489999999999999999999998556789999999999999997 9999999
Q ss_pred CccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 316 ~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|. |.++..|.||+||+||.|+. +.-.+|.++.++
T Consensus 572 Dl---------P~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~~~~ 605 (956)
T PRK04914 572 DL---------PFNPDLLEQRIGRLDRIGQK-HDIQIHVPYLEG 605 (956)
T ss_pred cC---------CCCHHHHHHHhcccccCCCC-ceEEEEEccCCC
Confidence 99 77999999999999999986 334455555444
No 101
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=2.3e-20 Score=184.96 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=94.4
Q ss_pred ccCCCeEEEc-cHHHHHHHHHHHHHcCC--CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEE
Q 008489 237 IQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRI 312 (564)
Q Consensus 237 ~~~g~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~V 312 (564)
..-..+|+|+ ++.+|..+.+.+.+.+. +.+.++||+..|.+|++.++.|+. +..++|||||++++|+|| .+.++
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccCCceE
Confidence 3445677777 89999999999988765 569999999999999999999999 999999999999999999 59999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
|+..+ |-.+.+|.||+||+||...- |.++.+..
T Consensus 581 invtl---------pd~k~nyvhrigrvgraerm---glaislva 613 (725)
T KOG0349|consen 581 INVTL---------PDDKTNYVHRIGRVGRAERM---GLAISLVA 613 (725)
T ss_pred EEEec---------Ccccchhhhhhhccchhhhc---ceeEEEee
Confidence 99988 66899999999999998876 88777643
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.79 E-value=4e-18 Score=196.84 Aligned_cols=282 Identities=18% Similarity=0.228 Sum_probs=169.6
Q ss_pred CCCCCccc-cchHHHh---cCCceEEEEccCCccHHHHHHH---HHHcC---CCEEEEccHHHHHHHHHHHHHhcCCeeE
Q 008489 60 TDLTRPHT-WYPLARK---KVRKVILHVGPTNSGKTHQALS---RLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCD 129 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~---~~~~~viv~apTGsGKT~~~~~---~l~~~---~~~li~~P~r~La~q~~~~l~~~g~~~~ 129 (564)
..+++.|. ++..+.. ..++..++++|||||||..++. .+++. +++|+++|+++|+.|..+.+...+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 35788888 7765532 2356799999999999987543 33332 5889999999999999999997654322
Q ss_pred E----EeC----ccccccCCCceEEEcceec-------------cccCcccEEEEccccccCCCC-------C-------
Q 008489 130 L----ITG----QEREEVDGAKHRAVTVEMA-------------DVVSDYDCAVIDEIQMLGCKT-------R------- 174 (564)
Q Consensus 130 ~----~~G----~~~~~~~~~~~i~~T~e~~-------------~~l~~~~~vViDEaH~~~~~~-------r------- 174 (564)
. +.+ .......+..++++|+..+ .....+++||+||||+-...+ -
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 1 111 1112233578889998432 124679999999999852100 0
Q ss_pred -cchHHHHH-------hccCccceEE----EccCCCchHHHHHHHHcCCce----EEEeecccC----------------
Q 008489 175 -GFSFTRAL-------LGICANELHL----CGDPAAVPLIQQILQVTGDDV----KVQSYERLS---------------- 222 (564)
Q Consensus 175 -g~~~~~~l-------l~l~~~~~~l----~~~~~~~~~~~~l~~~~g~~~----~v~~~~~~~---------------- 222 (564)
...|..++ +|+++++.+- .|.+...-.+.+.+. .|..+ ++....+..
T Consensus 572 ~~~~yr~iL~yFdA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~-DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~ 650 (1123)
T PRK11448 572 YVSKYRRVLDYFDAVKIGLTATPALHTTEIFGEPVYTYSYREAVI-DGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVIN 650 (1123)
T ss_pred HHHHHHHHHhhcCccEEEEecCCccchhHHhCCeeEEeeHHHHHh-cCCcccCcCCEEEEEEeccccccccccchhhhcc
Confidence 12233333 4555554321 010000000011110 01110 000000000
Q ss_pred ----CCC--CCCc----c-----------------c----cccccccCCCeEEEc-cHHHHHHHHHHHHHc-----C---
Q 008489 223 ----PLV--PLNV----P-----------------L----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-----G--- 262 (564)
Q Consensus 223 ----~~~--~~~~----~-----------------l----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~-----~--- 262 (564)
... .... . + ..+....+++.+||+ ++++++.+.+.|.+. +
T Consensus 651 ~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~ 730 (1123)
T PRK11448 651 TQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVE 730 (1123)
T ss_pred hhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcC
Confidence 000 0000 0 0 001111345677777 899999998887653 1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhCCCCCe-eEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccC
Q 008489 263 KHLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340 (564)
Q Consensus 263 ~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~-~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRa 340 (564)
...+..++|+.+ ++...++.|++ +.. +|+|+++++.+|+|+| |++||+....+ |...|.|++||+
T Consensus 731 ~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk---------S~~lf~QmIGRg 797 (1123)
T PRK11448 731 DDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR---------SRILYEQMLGRA 797 (1123)
T ss_pred ccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCC---------CHHHHHHHHhhh
Confidence 124667899875 46789999998 554 7999999999999998 99999998855 999999999999
Q ss_pred CCCCCC--CCcEEEEEe
Q 008489 341 GRYGSK--FPVGEVTCL 355 (564)
Q Consensus 341 GR~g~~--~~~G~~~~l 355 (564)
.|..++ +..+.++-+
T Consensus 798 tR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 798 TRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred ccCCccCCCceEEEEeh
Confidence 998762 333444443
No 103
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=7.8e-20 Score=170.00 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=170.2
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-----CC--CEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-----SS--SGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-----~~--~~l 105 (564)
.|.+|- |.|.+..++-.- ||..|+.+|. .||.+ .-|-+++.+|..|-|||.++..+-++ .| .++
T Consensus 43 gfrdfl-lkpellraivdc-----gfehpsevqhecipqa--ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvl 114 (387)
T KOG0329|consen 43 GFRDFL-LKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 114 (387)
T ss_pred chhhhh-cCHHHHHHHHhc-----cCCCchHhhhhhhhHH--hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEE
Confidence 344443 788888888888 9999999999 99998 55999999999999999986333222 23 357
Q ss_pred EEccHHHHHHHHHHH---HHhc--CCeeEEEeCcccccc------CCCceEEEcceec--------cccCcccEEEEccc
Q 008489 106 YCGPLRLLAWEVAKR---LNKA--NVSCDLITGQEREEV------DGAKHRAVTVEMA--------DVVSDYDCAVIDEI 166 (564)
Q Consensus 106 i~~P~r~La~q~~~~---l~~~--g~~~~~~~G~~~~~~------~~~~~i~~T~e~~--------~~l~~~~~vViDEa 166 (564)
+++.||+||.|+.+. +.++ ++++.+..|+..... ....++++||... -.++++++.|+||+
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 889999999999654 4444 788999988765432 2345667888432 23689999999999
Q ss_pred cccCCCCCcchHHHHHhccCccceE-EEccCCCchHHHHHHHHc-CCceEEEeecccCCCCCCCccccccccccCCCeEE
Q 008489 167 QMLGCKTRGFSFTRALLGICANELH-LCGDPAAVPLIQQILQVT-GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244 (564)
Q Consensus 167 H~~~~~~rg~~~~~~ll~l~~~~~~-l~~~~~~~~~~~~l~~~~-g~~~~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv 244 (564)
+.+...---+.-..-+..++...-+ ++++.+..+.++.++... .+..++.... .. +-.+.-+.+. -+
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd-E~-----KLtLHGLqQ~-----Yv 263 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD-EA-----KLTLHGLQQY-----YV 263 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccc-hh-----hhhhhhHHHH-----HH
Confidence 9775320001112223344443333 344433334455554321 1111110000 00 0000000000 00
Q ss_pred Ec-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCC
Q 008489 245 TF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDG 322 (564)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~ 322 (564)
=+ -.+.-.++.+.|.......|.++--+.. | +. |.. + +|||+++++|+||. +..|++|++
T Consensus 264 kLke~eKNrkl~dLLd~LeFNQVvIFvKsv~---R---l~-f~k-----r-~vat~lfgrgmdiervNi~~NYdm----- 325 (387)
T KOG0329|consen 264 KLKENEKNRKLNDLLDVLEFNQVVIFVKSVQ---R---LS-FQK-----R-LVATDLFGRGMDIERVNIVFNYDM----- 325 (387)
T ss_pred hhhhhhhhhhhhhhhhhhhhcceeEeeehhh---h---hh-hhh-----h-hHHhhhhccccCcccceeeeccCC-----
Confidence 00 0011112222222222212332222211 1 11 432 3 99999999999995 999999999
Q ss_pred ccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 323 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 323 ~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|-+..+|.||.|||||+|.+ |..+.+.+.+
T Consensus 326 ----p~~~DtYlHrv~rAgrfGtk---glaitfvs~e 355 (387)
T KOG0329|consen 326 ----PEDSDTYLHRVARAGRFGTK---GLAITFVSDE 355 (387)
T ss_pred ----CCCchHHHHHhhhhhccccc---cceeehhcch
Confidence 66999999999999999998 9998886654
No 104
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.78 E-value=1.5e-18 Score=186.83 Aligned_cols=110 Identities=23% Similarity=0.350 Sum_probs=92.3
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCC
Q 008489 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (564)
Q Consensus 265 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g 344 (564)
+++++|++|....|..++-.|+. |...|++||.+++-|||.|++.|||.+-+- .+++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~--g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQ--GHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhhc--CceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 68899999999999999999999 999999999999999999999999987643 668899999999999999
Q ss_pred CCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCCcHHH
Q 008489 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385 (564)
Q Consensus 345 ~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~~~~~ 385 (564)
-+ .-|.|..+.-. ...+++++....|.|+-+.-..+...
T Consensus 1035 FD-~lGnV~FmgiP-~~kv~rLlts~L~diqG~~p~T~~~~ 1073 (1330)
T KOG0949|consen 1035 FD-TLGNVVFMGIP-RQKVQRLLTSLLPDIQGAYPYTNTSF 1073 (1330)
T ss_pred cc-cccceEEEeCc-HHHHHHHHHHhhhcccCCCcchhhHH
Confidence 75 45777766432 24778889999998887655444333
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.77 E-value=7.7e-18 Score=189.36 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=163.0
Q ss_pred CCc-eEEEEccCCccHHHHHHHHH----Hc----CCCEEEEccHHHHHHHHHHHHHhcC---CeeEE-EeCccccccCCC
Q 008489 76 VRK-VILHVGPTNSGKTHQALSRL----ES----SSSGIYCGPLRLLAWEVAKRLNKAN---VSCDL-ITGQEREEVDGA 142 (564)
Q Consensus 76 ~~~-~viv~apTGsGKT~~~~~~l----~~----~~~~li~~P~r~La~q~~~~l~~~g---~~~~~-~~G~~~~~~~~~ 142 (564)
... .+++.||||+|||++++... .+ ..+++++.|+|.+..++++++.+.+ ...+. .+|.........
T Consensus 212 ~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~ 291 (733)
T COG1203 212 KRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE 291 (733)
T ss_pred cccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc
Confidence 355 89999999999999964322 22 3578999999999999999999531 11112 233222111111
Q ss_pred c-----eEEEc---------------c-eeccc-----------cCcccEEEEccccccCCCCCcchHHHHHhc-c--Cc
Q 008489 143 K-----HRAVT---------------V-EMADV-----------VSDYDCAVIDEIQMLGCKTRGFSFTRALLG-I--CA 187 (564)
Q Consensus 143 ~-----~i~~T---------------~-e~~~~-----------l~~~~~vViDEaH~~~~~~rg~~~~~~ll~-l--~~ 187 (564)
. ....| + ..+.. .-..+++|+||+|.+.+.. .......++. + ..
T Consensus 292 ~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~-~~~~l~~~i~~l~~~g 370 (733)
T COG1203 292 PDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET-MLAALLALLEALAEAG 370 (733)
T ss_pred cccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-hHHHHHHHHHHHHhCC
Confidence 1 11211 1 11110 1336789999999998752 2221111111 1 12
Q ss_pred cceEEEccCCCchHHHHHHHHcCCceEEEeecccC------------CCCCCCc----cc-cccccc--cCCCeEEEccH
Q 008489 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS------------PLVPLNV----PL-GSFSNI--QTGDCIVTFSR 248 (564)
Q Consensus 188 ~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~------------~~~~~~~----~l-~~l~~~--~~g~~iv~~s~ 248 (564)
..+.++.++-+..+.+.+....+....+....... ....... .. ...... .....+|++|+
T Consensus 371 ~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV 450 (733)
T COG1203 371 VPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTV 450 (733)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecH
Confidence 33334333333333344444433322221110000 0011111 00 111112 23345667799
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEecCccccCCcccc
Q 008489 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326 (564)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~ 326 (564)
..|.++++.|+..+. .++.+||.+...+|.+.++.+.+ ..+...|+|||+++|.|+|++.+.+|-.
T Consensus 451 ~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mITe----------- 518 (733)
T COG1203 451 DRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLITE----------- 518 (733)
T ss_pred HHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeeec-----------
Confidence 999999999999887 89999999999999988886542 1256789999999999999999988843
Q ss_pred ccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 327 p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+.+..+.+||+||++|.|.. ..|.++.....+
T Consensus 519 ~aPidSLIQR~GRv~R~g~~-~~~~~~v~~~~~ 550 (733)
T COG1203 519 LAPIDSLIQRAGRVNRHGKK-ENGKIYVYNDEE 550 (733)
T ss_pred CCCHHHHHHHHHHHhhcccc-cCCceeEeeccc
Confidence 34789999999999999942 338887776554
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.4e-16 Score=175.91 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=79.1
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccE-----EEe
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR-----IIF 314 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~-----VI~ 314 (564)
-++||+ |...++.+++.|.+.+. ...++||.+...+|..+.+.|++ |. |+||||++++|+||-..- +..
T Consensus 446 PVLVgt~Sie~sE~ls~~L~~~gi-~h~vLnak~~q~Ea~iia~Ag~~--G~--VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 446 PVLVGTVSIEASEFLSQLLKKENI-KHQVLNAKFHEKEAQIIAEAGRP--GA--VTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCC-CeEeecCCCChHHHHHHHhCCCC--Cc--EEEeccCccCCcceecCCchhhhhhc
Confidence 355555 79999999999999887 89999999999999999999999 74 999999999999996430 000
Q ss_pred ---------------------cCccccCCc----cccccCHhhHHhhhccCCCCCCCCCcEEEE
Q 008489 315 ---------------------STMKKFDGV----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353 (564)
Q Consensus 315 ---------------------~~~~k~~~~----~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~ 353 (564)
-+.....|. ..++-|.--=.|-.|||||-|.. |..-
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDP---Gss~ 581 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDP---GSSR 581 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCC---CceE
Confidence 000001111 13455777789999999999987 5543
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.9e-16 Score=172.54 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=87.9
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC----cc---
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----IS--- 310 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip----v~--- 310 (564)
...++|++ |...++.+++.|.+.+. .+..+||++...++..+.+.++. |. |+||||++++|.||+ |.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~gi-~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CeeEecCCcHHHHHHHHHhcCCC--ce--EEEEeccccCCCCCCCCcchhhhC
Confidence 34466666 89999999999999887 89999999998887877777776 65 999999999999993 77
Q ss_pred --EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 311 --~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+||++.. |.|...+.|+.|||||.|.. |.+..+.+-+
T Consensus 515 GLhVI~te~---------pes~ri~~Ql~GRtGRqG~~---G~s~~~~sle 553 (796)
T PRK12906 515 GLAVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFYLSLE 553 (796)
T ss_pred CcEEEeeec---------CCcHHHHHHHhhhhccCCCC---cceEEEEecc
Confidence 9999887 66999999999999999987 8776665433
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=8e-16 Score=169.82 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc--------
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS-------- 310 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~-------- 310 (564)
..++||+ |...++.+++.|.+.+. .+..+||. ..+|...+..|.. +...|+||||++++|+||+..
T Consensus 431 rpVLIft~Si~~se~Ls~~L~~~gi-~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGtDI~LgGn~~~~~~ 505 (830)
T PRK12904 431 QPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGTDIKLGGNPEMLAA 505 (830)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-ceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCcCccCCCchhhhhh
Confidence 4466666 89999999999998877 89999996 7789999999998 788999999999999999865
Q ss_pred -------------------------------EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEe
Q 008489 311 -------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355 (564)
Q Consensus 311 -------------------------------~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l 355 (564)
+||-. .++-|.--=.|-.|||||-|.. |.+-.+
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT---------erhesrRid~QlrGRagRQGdp---Gss~f~ 569 (830)
T PRK12904 506 ALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT---------ERHESRRIDNQLRGRSGRQGDP---GSSRFY 569 (830)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec---------ccCchHHHHHHhhcccccCCCC---CceeEE
Confidence 23322 3466888889999999999987 655333
No 109
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=6.9e-16 Score=170.05 Aligned_cols=303 Identities=18% Similarity=0.231 Sum_probs=218.4
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC---CCEEEEccHHHHHHHHHHHHHh-----cCCeeE
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS---SSGIYCGPLRLLAWEVAKRLNK-----ANVSCD 129 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~---~~~li~~P~r~La~q~~~~l~~-----~g~~~~ 129 (564)
|.+..++|. .++... ..+.++++.+|+|||||.++-.+++.. ++++|+.|.-+.+..++..+.+ .|..+.
T Consensus 1141 f~~~n~iqtqVf~~~y-~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLY-NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred ccccCCceEEEEeeee-cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 444588888 777664 478999999999999999998887763 5789999999999988877763 278888
Q ss_pred EEeCcccccc---CCCceEEEcceecccc---CcccEEEEccccccCCCCCcchH-----HHHHhccCccceEEEccCCC
Q 008489 130 LITGQEREEV---DGAKHRAVTVEMADVV---SDYDCAVIDEIQMLGCKTRGFSF-----TRALLGICANELHLCGDPAA 198 (564)
Q Consensus 130 ~~~G~~~~~~---~~~~~i~~T~e~~~~l---~~~~~vViDEaH~~~~~~rg~~~-----~~~ll~l~~~~~~l~~~~~~ 198 (564)
.++|+..... ...+++++||+.++.+ +.+++.|.||.|++++ ..|..+ ++.+-.-..+.+++++.+..
T Consensus 1220 ~l~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1220 KLTGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred ecCCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEeehh
Confidence 8888876443 4789999999888765 7799999999999984 344332 22232333456777776666
Q ss_pred chHHHHHHHHcC-CceEEEeecccCCCCCCCccc-----------------ccccc--ccCCCeEEEc-cHHHHHHHHHH
Q 008489 199 VPLIQQILQVTG-DDVKVQSYERLSPLVPLNVPL-----------------GSFSN--IQTGDCIVTF-SRHAIYRLKKA 257 (564)
Q Consensus 199 ~~~~~~l~~~~g-~~~~v~~~~~~~~~~~~~~~l-----------------~~l~~--~~~g~~iv~~-s~~~~~~l~~~ 257 (564)
..+.++++.... ..+.+....|+.|++.....+ ..+.+ ..+...+||. +++.+..++..
T Consensus 1299 lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~ 1378 (1674)
T KOG0951|consen 1299 LANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVD 1378 (1674)
T ss_pred hccchhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhc
Confidence 666666654322 244555556666664332111 11111 1344556666 78887765543
Q ss_pred HH-----------------------HcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEe
Q 008489 258 IE-----------------------SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314 (564)
Q Consensus 258 L~-----------------------~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~ 314 (564)
+- +....+|. |-++++.+..-+...|.. |.+.|+|...- .+|+-.....||.
T Consensus 1379 ~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvv 1453 (1674)
T KOG0951|consen 1379 LVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVV 1453 (1674)
T ss_pred cchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEE
Confidence 22 11222344 889999988889999999 99999988877 8898888899999
Q ss_pred cCccccCCc--cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCCCChhh
Q 008489 315 STMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSPML 374 (564)
Q Consensus 315 ~~~~k~~~~--~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~~~~ei 374 (564)
.+...|||. ...+.+.++..|+.|+|.|. |.|+.++.. +..++++++..+.|--
T Consensus 1454 mgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~------~k~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1454 MGTQYYDGKEHSYEDYPIAELLQMVGLASGA------GKCVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred ecceeecccccccccCchhHHHHHhhhhcCC------ccEEEEecCchHHHHHHhccCcCchH
Confidence 999999998 56778999999999999993 557666544 3478899999988843
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.66 E-value=5e-15 Score=168.40 Aligned_cols=110 Identities=25% Similarity=0.279 Sum_probs=89.5
Q ss_pred CCCeEEEcc--HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCC-CCeeEEEeccccccccccC-ccEEEe
Q 008489 239 TGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 239 ~g~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
.|.-+++|| ......+.+.|...+. ..+.+||+++.++|..+++.|+.++ +..-+|++|.+++.|||+. +++||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~-~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGY-QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCC-cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 344455553 5667777777876666 8999999999999999999998733 3456899999999999996 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.+++...|+.||+.|.|+. ..-.||+|...+
T Consensus 565 yD~---------dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~g 599 (1033)
T PLN03142 565 YDS---------DWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEY 599 (1033)
T ss_pred eCC---------CCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCC
Confidence 999 77999999999999999986 345677776554
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.8e-14 Score=157.84 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=177.1
Q ss_pred CCCCCccc-cchHHHhc--CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHH-hcCCeeEEE
Q 008489 60 TDLTRPHT-WYPLARKK--VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLN-KANVSCDLI 131 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~--~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~-~~g~~~~~~ 131 (564)
..++..|+ ++..+... ..+..++.|.||||||.++++.+ .+++++|+++|-..|..|+.++|. .+|.++.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 46677777 77777654 25789999999999999986655 355688999999999999999999 568888887
Q ss_pred eCccccc----------cCCCceEEEcc-eeccccCcccEEEEccccccCCCC----CcchHHHHHhcc-CccceEEEcc
Q 008489 132 TGQEREE----------VDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKT----RGFSFTRALLGI-CANELHLCGD 195 (564)
Q Consensus 132 ~G~~~~~----------~~~~~~i~~T~-e~~~~l~~~~~vViDEaH~~~~~~----rg~~~~~~ll~l-~~~~~~l~~~ 195 (564)
+++-... .....+++.|- -++..++++++|||||-|.-+-.+ |.++-.-+++.. ......++|+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgS 356 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGS 356 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEec
Confidence 7643221 12455666664 556778999999999999874321 222222222221 1222233443
Q ss_pred CCCchHHHHHHHHcCCceEEEe-ecccC---------------CCCC---C-Ccccccccc-cc-C--------------
Q 008489 196 PAAVPLIQQILQVTGDDVKVQS-YERLS---------------PLVP---L-NVPLGSFSN-IQ-T-------------- 239 (564)
Q Consensus 196 ~~~~~~~~~l~~~~g~~~~v~~-~~~~~---------------~~~~---~-~~~l~~l~~-~~-~-------------- 239 (564)
.++. ++.+.......+.... ..|.. +... . ...+..+.+ +. +
T Consensus 357 ATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~ 434 (730)
T COG1198 357 ATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP 434 (730)
T ss_pred CCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc
Confidence 3222 2333322111111111 01111 0000 0 000000000 00 1
Q ss_pred ------------------------------------------------CCeEEEccHHHHHHHHHHHHHc-CCCeEEEEc
Q 008489 240 ------------------------------------------------GDCIVTFSRHAIYRLKKAIESR-GKHLCSIVY 270 (564)
Q Consensus 240 ------------------------------------------------g~~iv~~s~~~~~~l~~~L~~~-~~~~v~~lh 270 (564)
+..+++++ -.++++.+.|.+. ...++..+.
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G-~GterieeeL~~~FP~~rv~r~d 513 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVG-PGTERIEEELKRLFPGARIIRID 513 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEec-ccHHHHHHHHHHHCCCCcEEEEc
Confidence 11122221 1134555566553 345788888
Q ss_pred CCCCHHH--HHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE--ecCccccCCc-cccccCHhhHHhhhccCCCCC
Q 008489 271 GSLPPET--RTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII--FSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYG 344 (564)
Q Consensus 271 g~l~~~~--R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI--~~~~~k~~~~-~~~p~s~~~~~Qr~GRaGR~g 344 (564)
++..... =...+..|.+ |+.+|||.|+++..|.|+| +..|. +.|..-+.++ +-..-....+.|-+|||||.+
T Consensus 514 ~Dtt~~k~~~~~~l~~~~~--ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 514 SDTTRRKGALEDLLDQFAN--GEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred cccccchhhHHHHHHHHhC--CCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC
Confidence 8765533 2467888998 9999999999999999998 88765 4444444433 233347788999999999997
Q ss_pred CCCCcEEEEEe-cCCCHHHHHhhhC
Q 008489 345 SKFPVGEVTCL-DSEDLPLLHKSLL 368 (564)
Q Consensus 345 ~~~~~G~~~~l-~~~~~~~~~~~~~ 368 (564)
.. |.++.- +..+.+.++....
T Consensus 592 ~~---G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 592 KP---GEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred CC---CeEEEEeCCCCcHHHHHHHh
Confidence 65 666544 4444344444333
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.5e-14 Score=157.75 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=78.2
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc---------
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS--------- 310 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~--------- 310 (564)
.++|++ |...++.+++.|.+.+. ...++||..+..++..+.+.|+. |. |+||||++++|.||-..
T Consensus 451 pVLV~t~sv~~se~ls~~L~~~gi-~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTDIkLggn~~~~~~~ 525 (908)
T PRK13107 451 PVLVGTVSIEQSELLARLMVKEKI-PHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTDIVLGGNWNMEIEA 525 (908)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcceecCCchHHhhhh
Confidence 355555 79999999999998877 88999999999999999999998 76 99999999999999643
Q ss_pred -----------------------------EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEE
Q 008489 311 -----------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (564)
Q Consensus 311 -----------------------------~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~ 352 (564)
+||-. .++-|.--=.|-.|||||-|.. |..
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT---------erheSrRID~QLrGRaGRQGDP---Gss 584 (908)
T PRK13107 526 LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGT---------ERHESRRIDNQLRGRAGRQGDA---GSS 584 (908)
T ss_pred hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEec---------ccCchHHHHhhhhcccccCCCC---Cce
Confidence 23322 2355777788999999999987 554
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.60 E-value=9.7e-15 Score=139.60 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=111.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-----CCCEEEEccH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----SSSGIYCGPL 110 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~-----~~~~li~~P~ 110 (564)
+++.+.+.+.+. ++..|++.|. +++.+ .+++++++++|||+|||.+++..+ .. .++++|++|+
T Consensus 6 ~~~~i~~~l~~~-----~~~~~~~~Q~~~~~~~--~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYAL-----GFEKPTPIQARAIPPL--LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC
Confidence 577788888877 8999999999 99888 459999999999999999864333 32 2368999999
Q ss_pred HHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccccCCC
Q 008489 111 RLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 111 r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~ 172 (564)
++|+.|+++.+..+ ++.+...+|+.... ..+..++++|++.+. .+.+++++|+||+|++.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc
Confidence 99999999888754 67777777754321 126789999985432 3577899999999998755
Q ss_pred CCcchHHHHHhccCccceEEEccCCCc-hHHHHHH
Q 008489 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQIL 206 (564)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~ 206 (564)
..+......+-.+.. ...+++.+++. +.+..+.
T Consensus 159 ~~~~~~~~~~~~l~~-~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 159 GFEDQIREILKLLPK-DRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred ChHHHHHHHHHhCCc-ccEEEEEeccCCHHHHHHH
Confidence 333333333333333 34444444444 3444443
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=4.4e-15 Score=118.99 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=70.5
Q ss_pred HHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHh
Q 008489 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (564)
Q Consensus 257 ~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Q 335 (564)
.|++.+. .+..+||++++++|..+++.|++ +..+|||||+++++|+|+| +++||+++. |.+..+|.|
T Consensus 2 ~L~~~~~-~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~---------~~~~~~~~Q 69 (78)
T PF00271_consen 2 FLEKKGI-KVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDP---------PWSPEEYIQ 69 (78)
T ss_dssp HHHHTTS-SEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSS---------ESSHHHHHH
T ss_pred ChHHCCC-cEEEEECCCCHHHHHHHHHHhhc--cCceEEEeecccccccccccccccccccc---------CCCHHHHHH
Confidence 4666666 89999999999999999999999 8889999999999999997 999999999 669999999
Q ss_pred hhccCCCCC
Q 008489 336 IAGRAGRYG 344 (564)
Q Consensus 336 r~GRaGR~g 344 (564)
++||+||.|
T Consensus 70 ~~GR~~R~g 78 (78)
T PF00271_consen 70 RIGRAGRIG 78 (78)
T ss_dssp HHTTSSTTT
T ss_pred HhhcCCCCC
Confidence 999999986
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.8e-13 Score=151.27 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=87.5
Q ss_pred ccCCCC---CCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHh----c
Q 008489 57 FDFTDL---TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK----A 124 (564)
Q Consensus 57 ~~~~~~---~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~----~ 124 (564)
.|+..| +++|. .+|.+ ..+++++..++||+|||+++...++ .+..+++++|++.||.|.++.+.+ +
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i--~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~l 162 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAI--AMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWL 162 (970)
T ss_pred ccccCCCCCChHHHHHhhhh--hcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 377777 88888 99988 4588899999999999999754433 444578899999999999998875 4
Q ss_pred CCeeEEEeCccccc----cCCCceEEEcceec--ccc--------------CcccEEEEccccccCC
Q 008489 125 NVSCDLITGQEREE----VDGAKHRAVTVEMA--DVV--------------SDYDCAVIDEIQMLGC 171 (564)
Q Consensus 125 g~~~~~~~G~~~~~----~~~~~~i~~T~e~~--~~l--------------~~~~~vViDEaH~~~~ 171 (564)
|++++.+.|+.... ...+.++++||.-+ +.+ ..+.++||||||.+..
T Consensus 163 GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 163 GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 88999888865432 22578999999433 332 3568999999998854
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.57 E-value=4.3e-14 Score=154.42 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=161.5
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH-HH--H-HcCCCEEEEccHHHHHHHHHHHHHhcC-----CeeE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SR--L-ESSSSGIYCGPLRLLAWEVAKRLNKAN-----VSCD 129 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~-~~--l-~~~~~~li~~P~r~La~q~~~~l~~~g-----~~~~ 129 (564)
..|...|. |-.-+ ..|+..-++||||.||||-.+ .. + .++++++|++||+.|+.|+++++.+++ ..+.
T Consensus 81 ~~~ws~QR~WakR~--~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~ 158 (1187)
T COG1110 81 FRPWSAQRVWAKRL--VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVL 158 (1187)
T ss_pred CCchHHHHHHHHHH--HcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCccee
Confidence 38999999 88766 679999999999999999842 22 2 245688999999999999999999663 3332
Q ss_pred E-EeCcccc----------ccCCCceEEEcceec----cccC--cccEEEEccccccCCCCCcchHHHHHhccCccc---
Q 008489 130 L-ITGQERE----------EVDGAKHRAVTVEMA----DVVS--DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--- 189 (564)
Q Consensus 130 ~-~~G~~~~----------~~~~~~~i~~T~e~~----~~l~--~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~--- 189 (564)
+ .+|.... ...+-.+++.|...+ +.+. ++|+|++|.+|-+.-..+.-.-.-.++|++...
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 2 3343111 122456777776444 3344 799999999998865433322222233332210
Q ss_pred --------------------------------------eEEEccCCCc-------hHHHHHHHHc-CC--c--eEEEeec
Q 008489 190 --------------------------------------LHLCGDPAAV-------PLIQQILQVT-GD--D--VKVQSYE 219 (564)
Q Consensus 190 --------------------------------------~~l~~~~~~~-------~~~~~l~~~~-g~--~--~~v~~~~ 219 (564)
-.++.++++. .+++.++... |. . -.+.+.+
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y 318 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIY 318 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeee
Confidence 1122233322 2333333221 10 0 0111111
Q ss_pred ccCCCCCCCccccccccccCCCeEEEcc---HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEE
Q 008489 220 RLSPLVPLNVPLGSFSNIQTGDCIVTFS---RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (564)
Q Consensus 220 ~~~~~~~~~~~l~~l~~~~~g~~iv~~s---~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlV 296 (564)
... ....+.+..+..+..|.+|++-. ++.++++++.|+..|. ++..+|+.- .+-++.|.. |+++++|
T Consensus 319 ~~~--~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-~a~~~~a~~-----~~~le~F~~--GeidvLV 388 (1187)
T COG1110 319 VES--ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGI-NAELIHAEK-----EEALEDFEE--GEVDVLV 388 (1187)
T ss_pred ccC--ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCc-eEEEeeccc-----hhhhhhhcc--CceeEEE
Confidence 111 22233334455667777776654 8999999999999988 888888742 378899999 9999999
Q ss_pred ecc----ccccccccC--ccEEEecCcccc
Q 008489 297 ASD----AIGMGLNLN--ISRIIFSTMKKF 320 (564)
Q Consensus 297 aT~----~~~~Gldip--v~~VI~~~~~k~ 320 (564)
... ++-+|+|+| ++++||++.+++
T Consensus 389 GvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 389 GVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred EecccccceeecCCchhheeEEEEecCCce
Confidence 865 789999998 999999999963
No 117
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=99.54 E-value=1.5e-14 Score=103.60 Aligned_cols=49 Identities=59% Similarity=0.931 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 008489 492 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 540 (564)
Q Consensus 492 l~~le~~~~~~~~y~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~ 540 (564)
|.+||.+|+++|+|+|||+|||+.|+|.+.|.++|..+++.|++.|+++
T Consensus 1 L~~LE~~hk~l~lYlWLs~Rfp~~F~d~e~a~~~k~~~~~~I~~~L~~~ 49 (49)
T PF12513_consen 1 LQRLESLHKVLDLYLWLSYRFPDVFPDRELAEELKKRVEEKIEEGLERI 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-TTTSTTHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999999999999999875
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.54 E-value=2.1e-13 Score=152.04 Aligned_cols=269 Identities=15% Similarity=0.159 Sum_probs=151.4
Q ss_pred CceEEEEccCCccHHHHHH---HHHH---cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcc---cc--ccCCCceE
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLE---SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE---RE--EVDGAKHR 145 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~---~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~---~~--~~~~~~~i 145 (564)
++..++..+||||||..+. ..+. ...++|+++|+..|..|+.+.+..++..+....+.. .. ...+..++
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEE
Confidence 4679999999999998863 2332 345789999999999999999998764322111111 01 11246788
Q ss_pred EEcceeccc-----cCcc------cEEEEccccccCCCCCcchHHH-----HHhccCccceEEEccCCCchHHH------
Q 008489 146 AVTVEMADV-----VSDY------DCAVIDEIQMLGCKTRGFSFTR-----ALLGICANELHLCGDPAAVPLIQ------ 203 (564)
Q Consensus 146 ~~T~e~~~~-----l~~~------~~vViDEaH~~~~~~rg~~~~~-----~ll~l~~~~~~l~~~~~~~~~~~------ 203 (564)
++|...+.. ...+ .+||+||||+.....+...+.. ..+|+++++....... +.....
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~-t~~~f~~~fg~~ 421 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKKALKNASFFGFTGTPIFKKDRD-TSLTFAYVFGRY 421 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHhhCCCCcEEEEeCCCccccccc-ccccccCCCCCe
Confidence 999865531 1111 2899999998643211111111 1244444443210000 000000
Q ss_pred ----HHHHH--cCCceEEEeecccCCCCCCC---------------c---------------------------------
Q 008489 204 ----QILQV--TGDDVKVQSYERLSPLVPLN---------------V--------------------------------- 229 (564)
Q Consensus 204 ----~l~~~--~g~~~~v~~~~~~~~~~~~~---------------~--------------------------------- 229 (564)
.+... .|-.+++..+.+........ .
T Consensus 422 i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~ 501 (667)
T TIGR00348 422 LHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKD 501 (667)
T ss_pred EEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHH
Confidence 00001 12122222211111000000 0
Q ss_pred cccccc---cccCCCeEEEc-cHHHHHHHHHHHHHcCC----CeEEEEcCCCCHH---------------------HHHH
Q 008489 230 PLGSFS---NIQTGDCIVTF-SRHAIYRLKKAIESRGK----HLCSIVYGSLPPE---------------------TRTR 280 (564)
Q Consensus 230 ~l~~l~---~~~~g~~iv~~-s~~~~~~l~~~L~~~~~----~~v~~lhg~l~~~---------------------~R~~ 280 (564)
.+..+. ...+++.+||+ ++..|..+++.|.+... ....+++++.+.+ ....
T Consensus 502 i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (667)
T TIGR00348 502 IAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYK 581 (667)
T ss_pred HHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHH
Confidence 000000 01135555555 89999999998876532 1345555543332 1236
Q ss_pred HHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCC-CCCCCCcEEEEEecC
Q 008489 281 QATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR-YGSKFPVGEVTCLDS 357 (564)
Q Consensus 281 ~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR-~g~~~~~G~~~~l~~ 357 (564)
..+.|+++ +..+|||.+|.+.+|+|.| +.++++..+ +....++|.+||+.| ..+++..|.++.+..
T Consensus 582 ~~~~Fk~~-~~~~ilIVvdmllTGFDaP~l~tLyldKp----------lk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 582 DLERFKKE-ENPKLLIVVDMLLTGFDAPILNTLYLDKP----------LKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHhcCC-CCceEEEEEcccccccCCCccceEEEecc----------ccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 77888763 6789999999999999999 777666544 334468999999999 465556788887755
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.52 E-value=1.7e-13 Score=147.67 Aligned_cols=274 Identities=15% Similarity=0.139 Sum_probs=164.2
Q ss_pred CCCCCccc-cch---HHHhcCCceEEEEccCCccHHHHHHHH---HHcC---CCEEEEccHHHHHHHHHHHHHh---cCC
Q 008489 60 TDLTRPHT-WYP---LARKKVRKVILHVGPTNSGKTHQALSR---LESS---SSGIYCGPLRLLAWEVAKRLNK---ANV 126 (564)
Q Consensus 60 ~~~~~~q~-~~p---~~~~~~~~~viv~apTGsGKT~~~~~~---l~~~---~~~li~~P~r~La~q~~~~l~~---~g~ 126 (564)
..++..|. ++. .+....++.+++++.||+|||..|++. |.+. +++|+++-+++|..|.+..+.. .|-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 34666776 443 233345566999999999999997543 4444 5789999999999999988775 366
Q ss_pred eeEEEeCccccccCCCceEEEcceecc--------c-----cCcccEEEEccccccCCCCCcch---HHHHHhccCccce
Q 008489 127 SCDLITGQEREEVDGAKHRAVTVEMAD--------V-----VSDYDCAVIDEIQMLGCKTRGFS---FTRALLGICANEL 190 (564)
Q Consensus 127 ~~~~~~G~~~~~~~~~~~i~~T~e~~~--------~-----l~~~~~vViDEaH~~~~~~rg~~---~~~~ll~l~~~~~ 190 (564)
.+..+.+..... .+.+.++|+..+. . -..+|+|||||||.=.-..+... +..+..++++++-
T Consensus 244 ~~n~i~~~~~~~--s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP~ 321 (875)
T COG4096 244 KMNKIEDKKGDT--SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATPK 321 (875)
T ss_pred ceeeeecccCCc--ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCcc
Confidence 677766554332 5678888873321 1 14599999999998543222211 2233455554321
Q ss_pred --------EEE-ccCCCchHHH-HHHHH---cCCceEEEee-----cccCCCCC--------------------------
Q 008489 191 --------HLC-GDPAAVPLIQ-QILQV---TGDDVKVQSY-----ERLSPLVP-------------------------- 226 (564)
Q Consensus 191 --------~l~-~~~~~~~~~~-~l~~~---~g~~~~v~~~-----~~~~~~~~-------------------------- 226 (564)
.+. |.+...--.+ .+... ..+.+.+... .++...+.
T Consensus 322 ~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v 401 (875)
T COG4096 322 ETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLV 401 (875)
T ss_pred cccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhcc
Confidence 222 3222111111 11110 0001111100 00111100
Q ss_pred ---CCccc-cc----ccc----ccCCCeEEEc-cHHHHHHHHHHHHHcC----CCeEEEEcCCCCHHHHHHHHHHHhCCC
Q 008489 227 ---LNVPL-GS----FSN----IQTGDCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDAS 289 (564)
Q Consensus 227 ---~~~~l-~~----l~~----~~~g~~iv~~-s~~~~~~l~~~L~~~~----~~~v~~lhg~l~~~~R~~~~~~F~~~~ 289 (564)
....+ .. +.. -..++.|||+ +..+++.+...+.... +.-+..+.|+-... ...++.|...+
T Consensus 402 ~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke 479 (875)
T COG4096 402 IPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKE 479 (875)
T ss_pred ccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcC
Confidence 00000 00 111 0134556666 8999999999987642 22477788776544 24555565534
Q ss_pred CCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 290 SEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 290 g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
.-.+|.|+.+++.+|||+| |..+|+....+ |..-|.|++||+-|..+.
T Consensus 480 ~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr---------SktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 480 KYPRIAITVDLLTTGVDVPEVVNLVFDRKVR---------SKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred CCCceEEehhhhhcCCCchheeeeeehhhhh---------hHHHHHHHhcCccccCcc
Confidence 5668999999999999997 99999887644 999999999999998764
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.51 E-value=2.3e-14 Score=132.60 Aligned_cols=136 Identities=24% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCC--CEEEEccHHHHHHHHHHHHHhc----CCeeEEE
Q 008489 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS--SGIYCGPLRLLAWEVAKRLNKA----NVSCDLI 131 (564)
Q Consensus 63 ~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~--~~li~~P~r~La~q~~~~l~~~----g~~~~~~ 131 (564)
|+.|. +++.+. +++++++.||||+|||++++..+ .+.+ +++|++|+++|+.|+++++.++ +.++..+
T Consensus 1 t~~Q~~~~~~i~--~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII--SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH--TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred CHHHHHHHHHHH--cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc
Confidence 45677 888884 68999999999999999975333 3433 7899999999999999999864 3567777
Q ss_pred eCccccc-------cCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhccCc-cceEEEcc
Q 008489 132 TGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGD 195 (564)
Q Consensus 132 ~G~~~~~-------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~-~~~~l~~~ 195 (564)
+|+.... ..+..++++|++.+. .+.+++++|+||+|++.+...+..+..++-.+.. ...+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 8765421 136899999996542 2345999999999999864333333343333322 13556666
Q ss_pred CCCch
Q 008489 196 PAAVP 200 (564)
Q Consensus 196 ~~~~~ 200 (564)
+++.+
T Consensus 159 SAT~~ 163 (169)
T PF00270_consen 159 SATLP 163 (169)
T ss_dssp ESSST
T ss_pred eeCCC
Confidence 66654
No 121
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.51 E-value=1.2e-13 Score=121.72 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=91.6
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEec
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~ 315 (564)
..+.++||+ +...++.+++.|.+.+. .+.++||++++.+|..+.+.|++ +..+|+++|+++++|+|+| +++||+.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~~~G~d~~~~~~vi~~ 103 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIARGIDLPNVSVVINY 103 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChhhcCcChhhCCEEEEe
Confidence 356677777 78999999999987555 89999999999999999999999 7899999999999999998 9999999
Q ss_pred CccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEE
Q 008489 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354 (564)
Q Consensus 316 ~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~ 354 (564)
+. +.+...+.|++||+||.|.. |.|+.
T Consensus 104 ~~---------~~~~~~~~Q~~GR~~R~~~~---~~~~~ 130 (131)
T cd00079 104 DL---------PWSPSSYLQRIGRAGRAGQK---GTAIL 130 (131)
T ss_pred CC---------CCCHHHheecccccccCCCC---ceEEe
Confidence 88 66999999999999999975 87765
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.8e-12 Score=130.03 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=95.9
Q ss_pred CeEEE-ccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCcc
Q 008489 241 DCIVT-FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (564)
Q Consensus 241 ~~iv~-~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~ 318 (564)
.++|. +|++.++.+.++|.+.|. ++..+|+++..-+|.++++..+. |..+|||.-|.+-.|+|+| |..|...|..
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~gi-kv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred eEEEEeehHHHHHHHHHHHHhcCc-eEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 34443 389999999999999998 99999999999999999999999 9999999999999999999 9999877765
Q ss_pred ccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhh
Q 008489 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367 (564)
Q Consensus 319 k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~ 367 (564)
|-. -..|-.+++|-+|||.|.-. |.|+.+.+.--+.+++.+
T Consensus 525 KeG----FLRse~SLIQtIGRAARN~~----GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 525 KEG----FLRSERSLIQTIGRAARNVN----GKVILYADKITDSMQKAI 565 (663)
T ss_pred ccc----cccccchHHHHHHHHhhccC----CeEEEEchhhhHHHHHHH
Confidence 410 12388899999999999887 999877654334444333
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.47 E-value=7.1e-12 Score=133.24 Aligned_cols=111 Identities=27% Similarity=0.308 Sum_probs=84.3
Q ss_pred cCCCeEEEccH--HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCC-CCeeEEEecccccccccc-CccEEE
Q 008489 238 QTGDCIVTFSR--HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNL-NISRII 313 (564)
Q Consensus 238 ~~g~~iv~~s~--~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~VlVaT~~~~~Gldi-pv~~VI 313 (564)
..|..|+.||+ +...-+..+..-.+ +..+-+.|+++.++|..+++.|+.++ .+.-++++|.+.|-|||+ .++.||
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R~-y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLRG-YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhcC-ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 45666777763 33333333333333 48999999999999999999999943 456789999999999999 599999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+||. ...+..=.|-.-||.|-|+. ..-.||+|.+++
T Consensus 564 lyDS---------DWNPQ~DLQAmDRaHRIGQ~-K~V~V~RLiten 599 (971)
T KOG0385|consen 564 LYDS---------DWNPQVDLQAMDRAHRIGQK-KPVVVYRLITEN 599 (971)
T ss_pred EecC---------CCCchhhhHHHHHHHhhCCc-CceEEEEEeccc
Confidence 9987 55677777888888888874 447789998776
No 124
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=6.6e-13 Score=134.72 Aligned_cols=283 Identities=19% Similarity=0.199 Sum_probs=177.5
Q ss_pred CCCCCCccc-cchHHHhcC-CceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc----CCeeEEE
Q 008489 59 FTDLTRPHT-WYPLARKKV-RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLI 131 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~-~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~ 131 (564)
-+.+++.|+ .+....... -+.-+|+.|.|+|||++..-+... .+++++++..-..+.|+..++..+ .-.+...
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 356778888 776664332 267899999999999996544433 467899999989999999988854 3456677
Q ss_pred eCcccc-ccCCCceEEEcceeccc--------------c--CcccEEEEccccccCCCCCcchHHHHH--------hccC
Q 008489 132 TGQERE-EVDGAKHRAVTVEMADV--------------V--SDYDCAVIDEIQMLGCKTRGFSFTRAL--------LGIC 186 (564)
Q Consensus 132 ~G~~~~-~~~~~~~i~~T~e~~~~--------------l--~~~~~vViDEaH~~~~~~rg~~~~~~l--------l~l~ 186 (564)
|.+... ...++.+++.|+.|... + ..++++++||+|.+... -+.+.+ ||++
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MFRRVlsiv~aHcKLGLT 455 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MFRRVLSIVQAHCKLGLT 455 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HHHHHHHHHHHHhhccce
Confidence 777665 44577788888766532 2 67999999999987522 222322 6666
Q ss_pred ccceE----------EEccCCCchHHHHHHHHcCCceEEEeecccCCCCCC-----------------------Cccccc
Q 008489 187 ANELH----------LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL-----------------------NVPLGS 233 (564)
Q Consensus 187 ~~~~~----------l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~-----------------------~~~l~~ 233 (564)
++-++ ++|..--..+-.++ ...|....|..-+.-+|.... ......
T Consensus 456 ATLvREDdKI~DLNFLIGPKlYEAnWmdL-~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqf 534 (776)
T KOG1123|consen 456 ATLVREDDKITDLNFLIGPKLYEANWMDL-QKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQF 534 (776)
T ss_pred eEEeeccccccccceeecchhhhccHHHH-HhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHH
Confidence 65332 12211100011111 112332233322222222110 000111
Q ss_pred ccc--ccCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 234 FSN--IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 234 l~~--~~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
+.+ ...||.||+|+- ++..+..+--+.++ -.+||..++.+|..+++.|+-. ..++-|+-+.+..+++|+| ..
T Consensus 535 LI~~HE~RgDKiIVFsD-nvfALk~YAikl~K---pfIYG~Tsq~ERm~ILqnFq~n-~~vNTIFlSKVgDtSiDLPEAn 609 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSD-NVFALKEYAIKLGK---PFIYGPTSQNERMKILQNFQTN-PKVNTIFLSKVGDTSIDLPEAN 609 (776)
T ss_pred HHHHHHhcCCeEEEEec-cHHHHHHHHHHcCC---ceEECCCchhHHHHHHHhcccC-CccceEEEeeccCccccCCccc
Confidence 111 246777777752 34555555444443 5789999999999999999873 5788999999999999999 88
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCc---EEEEEecCCC
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV---GEVTCLDSED 359 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~---G~~~~l~~~~ 359 (564)
+.|..... .-|..+-.||.||.-|....... ...|.+.+.|
T Consensus 610 vLIQISSH--------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 610 VLIQISSH--------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred EEEEEccc--------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 87754331 12778889999999887654222 4456666655
No 125
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.44 E-value=4.8e-13 Score=107.61 Aligned_cols=80 Identities=30% Similarity=0.455 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHh
Q 008489 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (564)
Q Consensus 253 ~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~ 331 (564)
.+++.|+..+. .+..+||++++++|...++.|++ +..+|+++|+++++|+|+| ++.||+++. |.+..
T Consensus 2 ~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~ 69 (82)
T smart00490 2 ELAELLKELGI-KVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPA 69 (82)
T ss_pred HHHHHHHHCCC-eEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHH
Confidence 35667776655 89999999999999999999999 7789999999999999998 999999988 66999
Q ss_pred hHHhhhccCCCCC
Q 008489 332 EVKQIAGRAGRYG 344 (564)
Q Consensus 332 ~~~Qr~GRaGR~g 344 (564)
.+.|++||++|.|
T Consensus 70 ~~~Q~~gR~~R~g 82 (82)
T smart00490 70 SYIQRIGRAGRAG 82 (82)
T ss_pred HHHHhhcccccCC
Confidence 9999999999975
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.38 E-value=2.5e-12 Score=142.10 Aligned_cols=109 Identities=21% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCc
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~ 317 (564)
..++||+ +++.++.+++.|.+.+. .+..+||+++..+|.++++.|++ |+.+|+|||+++++|+|+| ++.||+++.
T Consensus 443 ~~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 443 ERVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred CEEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3456666 89999999999998876 89999999999999999999999 9999999999999999998 999999885
Q ss_pred cccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 318 ~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..|. .|.+..+|+||+|||||... |.|+.+.+..
T Consensus 520 difG----~p~~~~~~iqriGRagR~~~----G~vi~~~~~~ 553 (655)
T TIGR00631 520 DKEG----FLRSERSLIQTIGRAARNVN----GKVIMYADKI 553 (655)
T ss_pred cccc----CCCCHHHHHHHhcCCCCCCC----CEEEEEEcCC
Confidence 4432 25688999999999999854 8998886654
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.33 E-value=8.9e-12 Score=138.66 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=93.9
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCc
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~ 317 (564)
..++||+ +++.++.+++.|.+.+. .+..+||+++..+|..+++.|++ |...|+|||+++++|+|+| ++.||+++.
T Consensus 447 ~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L~rGfdlp~v~lVii~d~ 523 (652)
T PRK05298 447 ERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDIPEVSLVAILDA 523 (652)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHHhCCccccCCcEEEEeCC
Confidence 3456666 89999999999998876 89999999999999999999999 9999999999999999998 999999887
Q ss_pred cccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 318 ~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
..|.- |.+..+|+||+||+||.. . |.|+.+.+.
T Consensus 524 eifG~----~~~~~~yiqr~GR~gR~~-~---G~~i~~~~~ 556 (652)
T PRK05298 524 DKEGF----LRSERSLIQTIGRAARNV-N---GKVILYADK 556 (652)
T ss_pred ccccc----CCCHHHHHHHhccccCCC-C---CEEEEEecC
Confidence 55431 458899999999999974 3 999888764
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=2.4e-10 Score=123.88 Aligned_cols=101 Identities=19% Similarity=0.085 Sum_probs=73.7
Q ss_pred chHHHhcCCceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHh----cCCeeEEEeCccccc--
Q 008489 69 YPLARKKVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE-- 138 (564)
Q Consensus 69 ~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~q~~~~l~~----~g~~~~~~~G~~~~~-- 138 (564)
+-....++|+ +....||+|||+++..+ .+.+..+.++.|+-.||.+-++.+.+ +|+.|+++++.....
T Consensus 85 ig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~er 162 (764)
T PRK12326 85 LGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEER 162 (764)
T ss_pred HHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHH
Confidence 3333334554 77999999999996322 24556788899999999999988874 599999998865432
Q ss_pred --cCCCceEEEcceec--cc-------------cCcccEEEEccccccCC
Q 008489 139 --VDGAKHRAVTVEMA--DV-------------VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 139 --~~~~~~i~~T~e~~--~~-------------l~~~~~vViDEaH~~~~ 171 (564)
...+.|+++|..-+ |. ...+.++||||+|.+..
T Consensus 163 r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 163 RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 23678889887221 11 36799999999998754
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.28 E-value=1.4e-10 Score=133.44 Aligned_cols=116 Identities=15% Similarity=0.255 Sum_probs=82.2
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCC-CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~V 312 (564)
.+|.++||| |.+..+.++..|..... .....+..+.. ..|..+++.|++ ++..||++|+.+.+|||+| ...|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCceEEE
Confidence 567788888 79999999999875211 12223333333 467789999998 7788999999999999995 5567
Q ss_pred EecCccccCCc-----------------c----ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~-----------------~----~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|..+++.-.+. . .-|-....+.|-+||.=|... +.|.++.+...
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~--D~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREN--DRGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCC--ceEEEEEEccc
Confidence 77776653221 0 112234668999999999875 45888888654
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.21 E-value=1.2e-10 Score=109.79 Aligned_cols=127 Identities=23% Similarity=0.165 Sum_probs=87.9
Q ss_pred ccCCCCCCccc-cchHHHhcCC-ceEEEEccCCccHHHHHHHHHH----cC--CCEEEEccHHHHHHHHHHHHHhcC---
Q 008489 57 FDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRLNKAN--- 125 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~-~~viv~apTGsGKT~~~~~~l~----~~--~~~li~~P~r~La~q~~~~l~~~g--- 125 (564)
+++..+++.|. .++.+. .. +++++.||||||||+.+...+. .. .+++|++|++.++.|+.+++.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~--~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALL--SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHH--cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 46788899999 888773 45 8999999999999997644443 22 568999999999999999998654
Q ss_pred --CeeEEEeCcccc-----ccCCC-ceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhcc
Q 008489 126 --VSCDLITGQERE-----EVDGA-KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185 (564)
Q Consensus 126 --~~~~~~~G~~~~-----~~~~~-~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l 185 (564)
.......+.... ...+. .++++|++.+. ...+++++|+||+|++....+...+..++-.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 334444443310 11233 88889975432 23568899999999998533344444444333
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=8.4e-10 Score=122.54 Aligned_cols=92 Identities=21% Similarity=0.075 Sum_probs=70.7
Q ss_pred EEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHh----cCCeeEEEeCccccc----cCCCceEEE
Q 008489 80 ILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE----VDGAKHRAV 147 (564)
Q Consensus 80 viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~q~~~~l~~----~g~~~~~~~G~~~~~----~~~~~~i~~ 147 (564)
-|....||+|||+++..+ .+.+..+.++.|+-.||.+-++.+.+ +|++|++++|+.... .....++++
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~YG 177 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYG 177 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEEEE
Confidence 488999999999997432 24556778889999999999998884 499999998865332 236889999
Q ss_pred cceec--cc-------------cCcccEEEEccccccCC
Q 008489 148 TVEMA--DV-------------VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 148 T~e~~--~~-------------l~~~~~vViDEaH~~~~ 171 (564)
|...+ |. ..++.++||||+|.++.
T Consensus 178 T~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 178 TNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred cccccccchhhccceechhhhcccccceeEechhhheec
Confidence 97332 11 27799999999998854
No 132
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.18 E-value=1.3e-10 Score=102.98 Aligned_cols=95 Identities=24% Similarity=0.234 Sum_probs=73.6
Q ss_pred ceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhcC---CeeEEEeCccccc------cCCC
Q 008489 78 KVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKAN---VSCDLITGQEREE------VDGA 142 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~------~~~~~li~~P~r~La~q~~~~l~~~g---~~~~~~~G~~~~~------~~~~ 142 (564)
+++++.||||+|||++++..+. ..++++|++|++.++.|+.+.+.... ..+....++.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 4689999999999999754432 33688999999999999999888543 7777777765443 3578
Q ss_pred ceEEEcceecc--------ccCcccEEEEccccccCCC
Q 008489 143 KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 143 ~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~ 172 (564)
.++++|++.+. ....++++|+||+|.+...
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 88899986442 2357999999999999765
No 133
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.17 E-value=3.5e-10 Score=126.08 Aligned_cols=111 Identities=27% Similarity=0.343 Sum_probs=94.3
Q ss_pred cCCCeEEEcc--HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCC-CCCeeEEEeccccccccccC-ccEEE
Q 008489 238 QTGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA-SSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 238 ~~g~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~-~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
..|..|++|| .+...-++++|...+. ..--+.|+++-+.|+..++.|+.| +....+|+||-+.|-|||+- ++.||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~y-pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGY-PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCC-cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 3566777776 6778888999988776 788999999999999999999994 34678999999999999995 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++|. ...+.+=+|-.-||.|-|+. ..-.||+|.+.+
T Consensus 776 IFDS---------DWNPQNDLQAqARaHRIGQk-k~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 776 IFDS---------DWNPQNDLQAQARAHRIGQK-KHVNVYRLVTKN 811 (1373)
T ss_pred EeCC---------CCCcchHHHHHHHHHhhccc-ceEEEEEEecCC
Confidence 9887 56888999999999999985 556689997765
No 134
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.17 E-value=3.2e-09 Score=113.93 Aligned_cols=112 Identities=28% Similarity=0.331 Sum_probs=88.6
Q ss_pred cCCCeEEEc--cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEEEe
Q 008489 238 QTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 314 (564)
Q Consensus 238 ~~g~~iv~~--s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~VI~ 314 (564)
..|+.++.| ++....-+...|....++..+-+.|..|...|...++.|++.+...-+|++|.+.|-|+|+ .+++||.
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 456666666 4676777777777544558999999999999999999999855566789999999999999 5999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+|+ .+.++.=.|-.-||=|.|+. ..-.||+|.+..
T Consensus 624 fDP---------dWNPStD~QAreRawRiGQk-kdV~VYRL~t~g 658 (923)
T KOG0387|consen 624 FDP---------DWNPSTDNQARERAWRIGQK-KDVVVYRLMTAG 658 (923)
T ss_pred ECC---------CCCCccchHHHHHHHhhcCc-cceEEEEEecCC
Confidence 988 45777778888888888874 446678886544
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=2.1e-11 Score=125.47 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=159.5
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHH--HHcCCCEEEEccHHHHHHHHHHHHH-------h
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSR--LESSSSGIYCGPLRLLAWEVAKRLN-------K 123 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~--l~~~~~~li~~P~r~La~q~~~~l~-------~ 123 (564)
.-...-..|. ++..+ .+|+++++.-.|.+||+++. ... +......+++.|+.+++....+-+. +
T Consensus 283 ~~E~~~~~~~~~~~~~--~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFA--SEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred cccchhhhhHHHHhhh--hhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhh
Confidence 3344445555 66666 56999999999999999984 222 2233466899999999876544322 1
Q ss_pred c-CCeeEEEeCccccc-----cCCCceEEEcceecc------------ccCcccEEEEccccccCCCCCcch--HHHHHh
Q 008489 124 A-NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCKTRGFS--FTRALL 183 (564)
Q Consensus 124 ~-g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~------------~l~~~~~vViDEaH~~~~~~rg~~--~~~~ll 183 (564)
+ ..-|....|..... ..+.+.++..+.+.. .+-...++++||+|...-.....+ ..+.|+
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~ 440 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALS 440 (1034)
T ss_pred hhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHH
Confidence 1 11122222221110 124556666554321 124456789999999864311111 112222
Q ss_pred ccC----c-cceEEEccCCCchHHHHHHHHc-CC-ceEEEe-eccc------------CCCCCC---Cccc----ccccc
Q 008489 184 GIC----A-NELHLCGDPAAVPLIQQILQVT-GD-DVKVQS-YERL------------SPLVPL---NVPL----GSFSN 236 (564)
Q Consensus 184 ~l~----~-~~~~l~~~~~~~~~~~~l~~~~-g~-~~~v~~-~~~~------------~~~~~~---~~~l----~~l~~ 236 (564)
.+. + ..+.+..-+++.+...++.+.. |- +++... ...+ .+.... ...+ ..+.+
T Consensus 441 ~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~ 520 (1034)
T KOG4150|consen 441 DLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAE 520 (1034)
T ss_pred HHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHH
Confidence 221 1 2334444444544333333221 11 111111 1101 111000 0000 00011
Q ss_pred --ccCCCeEEEc-cHHHHHHHHHHHHHc----CC---CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccc
Q 008489 237 --IQTGDCIVTF-SRHAIYRLKKAIESR----GK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (564)
Q Consensus 237 --~~~g~~iv~~-s~~~~~~l~~~L~~~----~~---~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gld 306 (564)
.+.-.+|-|+ +|+-|+-+....++. +. ..+..+.||.+.++|+.+....-. |+.+-++|||++|-|||
T Consensus 521 ~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~L~giIaTNALELGID 598 (1034)
T KOG4150|consen 521 MVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GKLCGIIATNALELGID 598 (1034)
T ss_pred HHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--CeeeEEEecchhhhccc
Confidence 1233456566 788887665544432 11 136677899999999999998877 99999999999999999
Q ss_pred cC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 307 ip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
|. .+.|+..+. |.|.+++.|..|||||....
T Consensus 599 IG~LDAVl~~GF---------P~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 599 IGHLDAVLHLGF---------PGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred cccceeEEEccC---------chhHHHHHHHhccccccCCC
Confidence 95 999999999 77999999999999998874
No 136
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.13 E-value=2e-09 Score=117.68 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=146.7
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcC-----CCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccc--cc-CCCceEE
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLESS-----SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EV-DGAKHRA 146 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~~-----~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~--~~-~~~~~i~ 146 (564)
..+...+|-+|.|||||++...++.+. .+++++..++.|+.+++++++..|+.--....+... .. ....-++
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLi 126 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLI 126 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEE
Confidence 457889999999999999988887553 688999999999999999999765531111111111 11 1124445
Q ss_pred Ecceecc-----ccCcccEEEEccccccCCCCCcch------HHHHHhccCccc-eEEEccCCCchHHHHHHHHc--CCc
Q 008489 147 VTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFS------FTRALLGICANE-LHLCGDPAAVPLIQQILQVT--GDD 212 (564)
Q Consensus 147 ~T~e~~~-----~l~~~~~vViDEaH~~~~~~rg~~------~~~~ll~l~~~~-~~l~~~~~~~~~~~~l~~~~--g~~ 212 (564)
+..+.+. .+.+||+|||||+-.....-.... .-..+..+..+. -.++.+....+..-+++..+ ++.
T Consensus 127 vqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 127 VQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred EEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 5554432 356799999999965532100000 011122222222 22233333333344444433 222
Q ss_pred eEE--EeecccC----------------------CCCCC--C-------------c-------cc--cccccccCCCeEE
Q 008489 213 VKV--QSYERLS----------------------PLVPL--N-------------V-------PL--GSFSNIQTGDCIV 244 (564)
Q Consensus 213 ~~v--~~~~~~~----------------------~~~~~--~-------------~-------~l--~~l~~~~~g~~iv 244 (564)
+.+ ..|.... +.... . . .. ....++..|+.|.
T Consensus 207 i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIc 286 (824)
T PF02399_consen 207 IHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNIC 286 (824)
T ss_pred EEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEE
Confidence 222 2221000 00000 0 0 00 0011234555554
Q ss_pred Ec--cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEEEec-Ccc
Q 008489 245 TF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFS-TMK 318 (564)
Q Consensus 245 ~~--s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~VI~~-~~~ 318 (564)
+| |...++.+++......+ +|..++|.-+.+ .+ +.+ ++.+|++=|.++..|+++. .+.|.-+ ...
T Consensus 287 vfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~---dv-~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~ 357 (824)
T PF02399_consen 287 VFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLE---DV-ESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM 357 (824)
T ss_pred EEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCcc---cc-ccc----cceeEEEEeceEEEEeccchhhceEEEEEecCC
Confidence 44 46667777777766655 899998877665 22 222 5689999999999999994 4544422 111
Q ss_pred ccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 319 k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
.+ --+..+..|..||+-.... ..+++..+
T Consensus 358 ~~------gpd~~s~~Q~lgRvR~l~~----~ei~v~~d 386 (824)
T PF02399_consen 358 SY------GPDMVSVYQMLGRVRSLLD----NEIYVYID 386 (824)
T ss_pred CC------CCcHHHHHHHHHHHHhhcc----CeEEEEEe
Confidence 11 1155679999999987776 44444433
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.12 E-value=5.6e-10 Score=120.17 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=65.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCC
Q 008489 266 CSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343 (564)
Q Consensus 266 v~~lhg~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~ 343 (564)
+-.+.|.|...+|...+..-+. ++.+++||-.-..+..|||+| .+.|||++..+ |.-..+|-+||..|.
T Consensus 502 i~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~---------smVDIVQaVGRVMRK 572 (1518)
T COG4889 502 IDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS---------SMVDIVQAVGRVMRK 572 (1518)
T ss_pred eecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch---------hHHHHHHHHHHHHHh
Confidence 3345588999999444433222 458899999999999999999 99999999865 899999999999999
Q ss_pred CCCCCcEEEEE
Q 008489 344 GSKFPVGEVTC 354 (564)
Q Consensus 344 g~~~~~G~~~~ 354 (564)
.+++..|+++.
T Consensus 573 a~gK~yGYIIL 583 (1518)
T COG4889 573 AKGKKYGYIIL 583 (1518)
T ss_pred CcCCccceEEE
Confidence 98877888764
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.11 E-value=2.1e-09 Score=109.62 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=94.9
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecC
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
+.+.+||. .....+.+...+.+.+. +..-+.|..++..|....+.|...+...--+++-.++++|+|+. .+.|||..
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~v-g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKV-GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCC-CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 34455665 45666667777777665 78888999999999999999998444444567778999999995 99999998
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHH-HHhhhCCCChhhhhcCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL-LHKSLLEPSPMLESAGL 379 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~-~~~~~~~~~~ei~~~~l 379 (564)
+ +.++.-++|--.||.|.|+..+.++.|......++. .-.+++....-+....+
T Consensus 571 L---------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000|consen 571 L---------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred e---------cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhccc
Confidence 8 457888899999999999876777777776655533 22344444444444333
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=2e-09 Score=120.13 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=85.7
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE----
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI---- 312 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V---- 312 (564)
+..+|||+ |+..++.+++.|.+.+. .+.++|+ .+.+|...+..|.. +...|+||||++++|+||+ ...|
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~gI-~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAKRI-AHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 44566666 89999999999999887 7889997 57788999999998 7778999999999999997 3333
Q ss_pred ----EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 313 ----IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 313 ----I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|.+.. |-|...+.||.|||||.|.. |.+..+.+.+
T Consensus 673 GL~VIgter---------hes~Rid~Ql~GRtGRqGdp---GsS~ffvSle 711 (1025)
T PRK12900 673 GLFILGSER---------HESRRIDRQLRGRAGRQGDP---GESVFYVSLE 711 (1025)
T ss_pred CceeeCCCC---------CchHHHHHHHhhhhhcCCCC---cceEEEechh
Confidence 44444 66888999999999999988 8887776554
No 140
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.05 E-value=1.1e-08 Score=112.19 Aligned_cols=102 Identities=26% Similarity=0.213 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCC-eeEEEecccccccccc-CccEEEecCccccCCccc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVEL 325 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~-~~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~ 325 (564)
.....++.+.+-+..+..++.+||.++..+|..+++.|++|++. .-.|.+|-+.+.|||+ ...+||.+|.
T Consensus 604 y~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~-------- 675 (776)
T KOG0390|consen 604 YTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP-------- 675 (776)
T ss_pred HHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC--------
Confidence 45555555555444456999999999999999999999997766 4456677799999999 7999999998
Q ss_pred cccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 326 ~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
.+.++.=.|-++||-|.|+. -.-++|+|....
T Consensus 676 -dWNPa~d~QAmaR~~RdGQK-k~v~iYrLlatG 707 (776)
T KOG0390|consen 676 -DWNPAVDQQAMARAWRDGQK-KPVYIYRLLATG 707 (776)
T ss_pred -CCCchhHHHHHHHhccCCCc-ceEEEEEeecCC
Confidence 66899999999999999985 456677775543
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.05 E-value=6.8e-09 Score=114.82 Aligned_cols=91 Identities=8% Similarity=-0.087 Sum_probs=68.9
Q ss_pred EEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cC-CeeEEEeCccccc----------cCCCce
Q 008489 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-AN-VSCDLITGQEREE----------VDGAKH 144 (564)
Q Consensus 81 iv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~-~g-~~~~~~~G~~~~~----------~~~~~~ 144 (564)
+..+.+|||||.++++.+ ..++++|+++|...|+.|+.++|++ +| ..+..+++..... .....+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 344446999999987655 3456789999999999999999995 56 6788887753221 124567
Q ss_pred EEEcc-eeccccCcccEEEEccccccCC
Q 008489 145 RAVTV-EMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 145 i~~T~-e~~~~l~~~~~vViDEaH~~~~ 171 (564)
++.|- -++..+.++++|||||-|.-+-
T Consensus 244 ViGtRSAvFaP~~~LgLIIvdEEhd~sy 271 (665)
T PRK14873 244 VVGTRSAVFAPVEDLGLVAIWDDGDDLL 271 (665)
T ss_pred EEEcceeEEeccCCCCEEEEEcCCchhh
Confidence 77775 6677889999999999998643
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.97 E-value=4.1e-08 Score=112.00 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=78.7
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCC-CCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS-LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~-l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~V 312 (564)
.+|.++|+| |.+..+.+++.|..... .+ ...|. .+ |..+.+.|++ ++..||++|+.+-.|||+| ...|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~-~~-l~Qg~~~~---~~~l~~~F~~--~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQV-SH-LAQEKNGT---AYNIKKRFDR--GEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCC-cE-EEeCCCcc---HHHHHHHHHc--CCCeEEEecchhhCCCCCCCCCeEEE
Confidence 467788877 78999999888875532 34 44443 33 3468899998 6667999999999999994 4566
Q ss_pred EecCccccCCc-----------------c----ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~-----------------~----~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|..+++.-.+. . .-|--.-.+.|-+||.=|... +.|.++.+...
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~--D~Gvv~ilD~R 783 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRED--QKSAVLILDRR 783 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCC--CcEEEEEECCc
Confidence 76666543221 0 112234568999999999875 45988888765
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.95 E-value=2.3e-08 Score=112.28 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=70.0
Q ss_pred EEccHHHHHHHHHHHHHcC-----CCeEEEEcCCCCHHHHHHHHHHHh----------------------C-C-CCCeeE
Q 008489 244 VTFSRHAIYRLKKAIESRG-----KHLCSIVYGSLPPETRTRQATRFN----------------------D-A-SSEFDV 294 (564)
Q Consensus 244 v~~s~~~~~~l~~~L~~~~-----~~~v~~lhg~l~~~~R~~~~~~F~----------------------~-~-~g~~~V 294 (564)
.+.+.+.+..+++.|-... ...++++|+..+...|..+++... + + .+...|
T Consensus 762 R~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i 841 (1110)
T TIGR02562 762 RVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFI 841 (1110)
T ss_pred EEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeE
Confidence 3335666777777665432 224889999999999988775531 1 1 246789
Q ss_pred EEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 295 lVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
+|||+++|.|+|++.+.+|-. +-+..+.+||+||+.|.|..
T Consensus 842 ~v~Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 842 VLATPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEeeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccC
Confidence 999999999999999988854 44899999999999999874
No 144
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.94 E-value=1.6e-08 Score=112.73 Aligned_cols=108 Identities=26% Similarity=0.355 Sum_probs=81.1
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEE--EEcCCCCHHHHHHHHHHHhCCCCCeeEE-Eecccccccccc-CccEEEec
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCS--IVYGSLPPETRTRQATRFNDASSEFDVL-VASDAIGMGLNL-NISRIIFS 315 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~--~lhg~l~~~~R~~~~~~F~~~~g~~~Vl-VaT~~~~~Gldi-pv~~VI~~ 315 (564)
.++||| -+..+.-+.+.|-+.....|. .+.|+.+|.+|.++.++|++.+ .++|| ++|-+.|-|+|+ .+|.|||.
T Consensus 1342 RiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp-tIDvLlLTThVGGLGLNLTGADTVVFv 1420 (1549)
T KOG0392|consen 1342 RILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP-TIDVLLLTTHVGGLGLNLTGADTVVFV 1420 (1549)
T ss_pred eeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC-ceeEEEEeeeccccccccCCCceEEEE
Confidence 467777 466666666666554433454 7899999999999999999933 55655 567799999999 59999998
Q ss_pred CccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 316 ~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
.- .+++..=.|-+-||.|-|++ ..--||++....
T Consensus 1421 EH---------DWNPMrDLQAMDRAHRIGQK-rvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1421 EH---------DWNPMRDLQAMDRAHRIGQK-RVVNVYRLITRG 1454 (1549)
T ss_pred ec---------CCCchhhHHHHHHHHhhcCc-eeeeeeeehhcc
Confidence 76 44566669999999999985 444567775543
No 145
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.94 E-value=1.6e-07 Score=101.02 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=81.0
Q ss_pred cCCCeEEEccH-HHH-HHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 238 QTGDCIVTFSR-HAI-YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 238 ~~g~~iv~~s~-~~~-~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
..|+.|+.||+ ... .-+...|.-.+. +..-+.|+.+-.+|...+..|+....-.-+|++|-+.|-|||+- ++.||.
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~-~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGY-KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCc-eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 45677887863 333 333334444444 88999999999999999999998555667899999999999995 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+|.. ..+-.=.|---||.|.|+. -.-.||+|.+++
T Consensus 854 hD~d---------FNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~ 888 (941)
T KOG0389|consen 854 HDID---------FNPYDDKQAEDRCHRVGQT-KPVTVYRLITKS 888 (941)
T ss_pred eecC---------CCCcccchhHHHHHhhCCc-ceeEEEEEEecC
Confidence 9883 2444455666666666653 226788887765
No 146
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=1e-07 Score=105.23 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=66.0
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc---------
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS--------- 310 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~--------- 310 (564)
-++|.. |.+..+.++..|.+.+. ..-++++.-.. +...+-. +.| ..-.|.||||++|+|-||-..
T Consensus 428 PVLVgT~SIe~SE~ls~~L~~~gi-~h~vLNAk~~e--~EA~IIa-~AG-~~GaVTIATNMAGRGTDI~Lg~~V~~~GGL 502 (925)
T PRK12903 428 PILIGTAQVEDSETLHELLLEANI-PHTVLNAKQNA--REAEIIA-KAG-QKGAITIATNMAGRGTDIKLSKEVLELGGL 502 (925)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-Cceeecccchh--hHHHHHH-hCC-CCCeEEEecccccCCcCccCchhHHHcCCc
Confidence 345544 78999999999998876 66777775332 2222211 221 133699999999999999643
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEE
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~ 352 (564)
+||-... +-|..-=.|..|||||-|.. |..
T Consensus 503 hVIgTer---------heSrRIDnQLrGRaGRQGDp---Gss 532 (925)
T PRK12903 503 YVLGTDK---------AESRRIDNQLRGRSGRQGDV---GES 532 (925)
T ss_pred EEEeccc---------CchHHHHHHHhcccccCCCC---Ccc
Confidence 6776544 44666677999999999987 654
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.87 E-value=2.9e-09 Score=99.48 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCccc-cchHHHhc-----CCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeC-
Q 008489 62 LTRPHT-WYPLARKK-----VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG- 133 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~-----~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G- 133 (564)
|++.|. ++..+... ..+++++.+|||||||.+++..+.+ ..++++++|+..|+.|+.+.+..++.......+
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~ 83 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFEK 83 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 455666 55555431 3689999999999999997643322 128899999999999999999643222111100
Q ss_pred --------------------ccccccCCCceEEEcceecc-------------------ccCcccEEEEccccccCC
Q 008489 134 --------------------QEREEVDGAKHRAVTVEMAD-------------------VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 134 --------------------~~~~~~~~~~~i~~T~e~~~-------------------~l~~~~~vViDEaH~~~~ 171 (564)
..........+.+.|...+. ....+++||+||+|+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 84 SIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp -GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00111235566777763221 235789999999999864
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.86 E-value=3.3e-07 Score=101.76 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=69.7
Q ss_pred CceEEEEccCCccHHHHHH-HHH---HcCCCEEEEccHHHHHHHHHHHHHh----cCCeeEEEeCcccc----ccCCCce
Q 008489 77 RKVILHVGPTNSGKTHQAL-SRL---ESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQERE----EVDGAKH 144 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~-~~l---~~~~~~li~~P~r~La~q~~~~l~~----~g~~~~~~~G~~~~----~~~~~~~ 144 (564)
++--|....||.|||+++. .+. +.+..+-|+.+...||..-++.+.. +|+.|+++.++... ....+.|
T Consensus 89 ~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~~DI 168 (870)
T CHL00122 89 NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDI 168 (870)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcCCCC
Confidence 3446899999999999963 222 2345567889999999988888774 59999998775443 2346788
Q ss_pred EEEcceec--cc-------------cCcccEEEEccccccCCC
Q 008489 145 RAVTVEMA--DV-------------VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 145 i~~T~e~~--~~-------------l~~~~~vViDEaH~~~~~ 172 (564)
+++|..-+ |. ...+.++||||||.+..+
T Consensus 169 tYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 169 TYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred EecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 89887221 11 367999999999987543
No 149
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.84 E-value=4.2e-09 Score=92.23 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCceEEEEccCCccHHHHHHH-----HHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcc-ccccCCCceEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQALS-----RLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE-REEVDGAKHRAVTV 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~-----~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~-~~~~~~~~~i~~T~ 149 (564)
+++..++-..+|+|||..++. .+.+.+++|++.|||.++.++++.++...+.+. +... .....+..+-++|.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~--t~~~~~~~~g~~~i~vMc~ 80 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH--TNARMRTHFGSSIIDVMCH 80 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE--STTSS----SSSSEEEEEH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC--ceeeeccccCCCccccccc
Confidence 578899999999999998543 444678999999999999999999986554433 2211 11223455566665
Q ss_pred ee-----cc--ccCcccEEEEccccccC
Q 008489 150 EM-----AD--VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 e~-----~~--~l~~~~~vViDEaH~~~ 170 (564)
.. ++ .+.+|++||+||+|...
T Consensus 81 at~~~~~~~p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 81 ATYGHFLLNPCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp HHHHHHHHTSSCTTS-SEEEECTTT--S
T ss_pred HHHHHHhcCcccccCccEEEEeccccCC
Confidence 22 22 25889999999999864
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=8.1e-06 Score=90.94 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=67.0
Q ss_pred EEEEccCCccHHHHHH-HHHH---cCCCEEEEccHHHHHHHHHHHHH----hcCCeeEEEeCccc----cccCCCceEEE
Q 008489 80 ILHVGPTNSGKTHQAL-SRLE---SSSSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQER----EEVDGAKHRAV 147 (564)
Q Consensus 80 viv~apTGsGKT~~~~-~~l~---~~~~~li~~P~r~La~q~~~~l~----~~g~~~~~~~G~~~----~~~~~~~~i~~ 147 (564)
-|..+.||-|||+++. .+.+ .+..+-++.+..-||..=++.+. -+|+.|+++.++.. +....+.|+++
T Consensus 101 ~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DItYg 180 (939)
T PRK12902 101 QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYA 180 (939)
T ss_pred ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeEEe
Confidence 4899999999999973 3322 34556777888899987777766 35999999876543 23347889999
Q ss_pred cceec--c-------------ccCcccEEEEccccccCC
Q 008489 148 TVEMA--D-------------VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 148 T~e~~--~-------------~l~~~~~vViDEaH~~~~ 171 (564)
|..-+ | ....+.++||||||.+..
T Consensus 181 Tn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 181 TNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred cCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 97322 1 137799999999998743
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.40 E-value=1.5e-06 Score=96.01 Aligned_cols=108 Identities=22% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCeEEEccHHHHHHHH-HHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCC-eeEEEeccccccccccC-ccEEEecC
Q 008489 240 GDCIVTFSRHAIYRLK-KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 240 g~~iv~~s~~~~~~l~-~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~-~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
+.+++||....+..+. .+|.- ...+..-+.|....++|-..++.|+.|+.. ..+|.+|-+.+.|+|+. ++.||.+|
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~-~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifd 805 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQI-REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFD 805 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhh-hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEec
Confidence 3455555444443333 33332 233788899999999999999999996554 47899999999999995 99999988
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
. ...+....|+.-||.|.|.. ..-.++++...
T Consensus 806 s---------dwnp~~d~qaqdrahrigq~-~evRv~rl~tv 837 (1157)
T KOG0386|consen 806 S---------DWNPHQDLQAQDRAHRIGQK-KEVRVLRLITV 837 (1157)
T ss_pred C---------CCCchhHHHHHHHHHHhhch-hheeeeeeehh
Confidence 7 45788899999999999985 44556666543
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.38 E-value=7.9e-06 Score=83.91 Aligned_cols=86 Identities=23% Similarity=0.222 Sum_probs=70.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCC
Q 008489 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (564)
Q Consensus 264 ~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR 342 (564)
..++.+-|+|++..|...++.|.+...-.-+||+-.+.|..+|+- ...|.+.|+ |..++--+|-..|..|
T Consensus 663 fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP---------WWNpaVe~Qa~DRiHR 733 (791)
T KOG1002|consen 663 FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP---------WWNPAVEWQAQDRIHR 733 (791)
T ss_pred ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc---------cccHHHHhhhhhhHHh
Confidence 379999999999999999999998555566788889999999995 999999988 8888888888888888
Q ss_pred CCCCCCcEEEEEecCCC
Q 008489 343 YGSKFPVGEVTCLDSED 359 (564)
Q Consensus 343 ~g~~~~~G~~~~l~~~~ 359 (564)
.|+- ..-.|++|.-++
T Consensus 734 IGQ~-rPvkvvrf~iEn 749 (791)
T KOG1002|consen 734 IGQY-RPVKVVRFCIEN 749 (791)
T ss_pred hcCc-cceeEEEeehhc
Confidence 7763 335666665444
No 153
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.24 E-value=7.6e-06 Score=82.77 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH---cCC------CEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCcc------c
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE---SSS------SGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQE------R 136 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~---~~~------~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~------~ 136 (564)
..+..++.-++|+|||.+++..+. ..+ .+||++|. .+..++...+.++ ..++....|.. .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccc
Confidence 467789999999999999765543 221 48999999 6667777777754 35666777766 2
Q ss_pred cccCCCceEEEcceecc---------cc--CcccEEEEccccccCCCCCcchHHHHHhccCccceEE
Q 008489 137 EEVDGAKHRAVTVEMAD---------VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL 192 (564)
Q Consensus 137 ~~~~~~~~i~~T~e~~~---------~l--~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l 192 (564)
.......++++|++.+. .+ .++++||+||+|.+.+. .......+..+.+....+
T Consensus 103 ~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~~~~~~l 167 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLRARYRWL 167 (299)
T ss_dssp SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCCECEEEE
T ss_pred cccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccccceEEe
Confidence 23346678888876654 11 45999999999999633 555566666655444333
No 154
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.13 E-value=2.3e-05 Score=83.30 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=61.7
Q ss_pred cccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCeeE
Q 008489 56 KFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCD 129 (564)
Q Consensus 56 ~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~ 129 (564)
.+++..+..-|. +...+ +++...+|+||+|+|||.... +.+. .++.+++|+|...++.|+++.+.+-|+++.
T Consensus 405 ~~~lpkLN~SQ~~AV~~V--L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVv 482 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVV 482 (935)
T ss_pred CCCchhhchHHHHHHHHH--HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEe
Confidence 348899999999 99988 679999999999999998842 2222 347899999999999999999998888776
Q ss_pred EE
Q 008489 130 LI 131 (564)
Q Consensus 130 ~~ 131 (564)
-+
T Consensus 483 Rl 484 (935)
T KOG1802|consen 483 RL 484 (935)
T ss_pred ee
Confidence 44
No 155
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=1.2e-05 Score=77.92 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCCccc-cchHHHhcCCce-EEEEccCCccHHHHH---HHHH---------HcCCCEEEEccHHHHHHHHHHHHHh
Q 008489 62 LTRPHT-WYPLARKKVRKV-ILHVGPTNSGKTHQA---LSRL---------ESSSSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~~~~~-viv~apTGsGKT~~~---~~~l---------~~~~~~li~~P~r~La~q~~~~l~~ 123 (564)
+++.|. ++..+ +.... .+|.||+|+|||+.+ +..+ ...+++++++|+...+.++.+++.+
T Consensus 2 ln~~Q~~Ai~~~--~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSA--LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHH--CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHH--HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344566 66666 55665 999999999999874 3333 2235789999999999999999987
No 156
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.06 E-value=1.7e-06 Score=96.08 Aligned_cols=150 Identities=21% Similarity=0.163 Sum_probs=107.4
Q ss_pred CCCCccccchHHHhcCCceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhc----CCeeEE
Q 008489 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDL 130 (564)
Q Consensus 61 ~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~------~~~~~li~~P~r~La~q~~~~l~~~----g~~~~~ 130 (564)
.+.+.|..+-.-...-..+.++.+|||||||.++-.++. ..++++|+.|..+|..+-.+++.+. |+++.-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 444555522222113466789999999999999854443 2358899999999999888877732 788888
Q ss_pred EeCccccc---cCCCceEEEcceecccc----------CcccEEEEccccccCCCCCcchHHHHHhcc------CccceE
Q 008489 131 ITGQEREE---VDGAKHRAVTVEMADVV----------SDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELH 191 (564)
Q Consensus 131 ~~G~~~~~---~~~~~~i~~T~e~~~~l----------~~~~~vViDEaH~~~~~~rg~~~~~~ll~l------~~~~~~ 191 (564)
.+|+.... ..++.+++.|++.++.. +.++.+|+||.|..++ +||..+..+.... +.+.++
T Consensus 1007 ~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr 1085 (1230)
T KOG0952|consen 1007 LTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVR 1085 (1230)
T ss_pred ccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchh
Confidence 88876654 23788899999888653 5789999999999987 6787754433332 234567
Q ss_pred EEccCCCchHHHHHHHHcCC
Q 008489 192 LCGDPAAVPLIQQILQVTGD 211 (564)
Q Consensus 192 l~~~~~~~~~~~~l~~~~g~ 211 (564)
+.+.+....+..++.+|.+-
T Consensus 1086 ~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1086 YLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred hhhHhhhhhccHHHHHHhCC
Confidence 77777777777788888764
No 157
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=1.1e-05 Score=76.51 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=69.0
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccc
Q 008489 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~ 136 (564)
|++-|. ++..+....++.+++.||.|+|||+.. ...+.. +.+++++.||...+..+.+.. |+.+..+.....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~---~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT---GIEAQTIHSFLY 78 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH---TS-EEEHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh---CcchhhHHHHHh
Confidence 455566 676665555678999999999999984 233333 357889999999998877763 444433322111
Q ss_pred cccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccCc--cceEEEccCCCc
Q 008489 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAV 199 (564)
Q Consensus 137 ~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~--~~~~l~~~~~~~ 199 (564)
..... ..+....+.+.+++||||+-++... .+..++-.... ..+.++|++.-+
T Consensus 79 ~~~~~------~~~~~~~~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 79 RIPNG------DDEGRPELPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCE------ECCSSCC-TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred cCCcc------cccccccCCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcchh
Confidence 10000 0000001567789999999998732 22333322322 356777776543
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.97 E-value=0.00036 Score=74.97 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=70.7
Q ss_pred HHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCC-CeeEEEecccccccccc-CccEEEecCccccCCccccccCHhhH
Q 008489 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEV 333 (564)
Q Consensus 256 ~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g-~~~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~s~~~~ 333 (564)
..|.+.+. ....+||.....+|..+++.|+...| ..-.|++=.+.+.|+|+ ...++|..|+ -+.++--
T Consensus 764 ~hi~~~g~-~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl---------HWNPaLE 833 (901)
T KOG4439|consen 764 KHIQKGGH-IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL---------HWNPALE 833 (901)
T ss_pred HHHhhCCe-eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec---------ccCHHHH
Confidence 33444444 67889999999999999999998444 55566777888999999 5999999998 3477778
Q ss_pred HhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 334 KQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 334 ~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
.|-.-|.-|.|+. ..-+++++...+
T Consensus 834 qQAcDRIYR~GQk-K~V~IhR~~~~g 858 (901)
T KOG4439|consen 834 QQACDRIYRMGQK-KDVFIHRLMCKG 858 (901)
T ss_pred HHHHHHHHHhccc-CceEEEEEEecC
Confidence 8888888888875 335566664443
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.95 E-value=0.00011 Score=85.35 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=54.3
Q ss_pred HHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC-CCcEEEEEecC
Q 008489 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDS 357 (564)
Q Consensus 279 ~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~-~~~G~~~~l~~ 357 (564)
......|..+....++||-+|.+-+|+|-|+-+++..|- |+---.++|-+-|+.|.-++ +..|.++.+..
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 344555544557899999999999999999666666655 44566789999999998877 57899988865
No 160
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.82 E-value=4.4e-05 Score=80.89 Aligned_cols=61 Identities=18% Similarity=0.344 Sum_probs=48.5
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHH
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P~r~La~q~~~~l~ 122 (564)
.+...|. ++..+.+.+ ...++.||+|+|||+.. .+.+.++.++++|+|+.+.+..+.+|+.
T Consensus 185 ~ln~SQk~Av~~~~~~k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNK-DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccC-CceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4555555 777664322 77899999999999984 5667778899999999999999999866
No 161
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.81 E-value=0.00012 Score=81.61 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=51.1
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
..++..|. ++..+.. ....++|.||+|+|||+.+. +.+..+.++++++|+...+.++.+++.+.|+++
T Consensus 156 ~~ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~v 228 (637)
T TIGR00376 156 PNLNESQKEAVSFALS-SKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKI 228 (637)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcE
Confidence 34566676 6666532 23789999999999999853 333456789999999999999999998755443
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=97.75 E-value=8.7e-05 Score=58.66 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=37.0
Q ss_pred CCceEEEEccCCccHHHHHHH---HHHc-----CCCEEEEccHHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS---RLES-----SSSGIYCGPLRLLAWEVAKRL 121 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~---~l~~-----~~~~li~~P~r~La~q~~~~l 121 (564)
+++.++|.||+|||||+.+.. .+.. ..+++++.|++.++.++.+++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 367788899999999977533 3332 457899999999999999998
No 163
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.62 E-value=0.00018 Score=83.97 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=36.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKR 120 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~ 120 (564)
+++++++.||||+|||++++...+ .+++++|..+|+.|..|+..+
T Consensus 275 ~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 275 DSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred cCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 578899999999999999854332 346788889999999998763
No 164
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.59 E-value=7.8e-05 Score=77.52 Aligned_cols=82 Identities=26% Similarity=0.248 Sum_probs=56.2
Q ss_pred ceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcc--
Q 008489 78 KVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~------~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~-- 149 (564)
+.++|.|..|||||+.++..+. ...+++++++...|...+.+.+..... ... ....+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------~~~------~~~~~~~~~~ 69 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN------PKL------KKSDFRKPTS 69 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc------cch------hhhhhhhhHH
Confidence 5789999999999999865443 335789999999999988888875320 000 00001111
Q ss_pred ------eeccccCcccEEEEccccccCC
Q 008489 150 ------EMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 150 ------e~~~~l~~~~~vViDEaH~~~~ 171 (564)
........+++|||||||.+..
T Consensus 70 ~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 70 FINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1223457899999999999975
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.42 E-value=0.00029 Score=77.70 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhc-------CCeeEEEeC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKA-------NVSCDLITG 133 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~------~~~~~li~~P~r~La~q~~~~l~~~-------g~~~~~~~G 133 (564)
+++++++.||||+|||.+++...+ .+++++|++||++|+.|+++.+..+ .+++.++.|
T Consensus 15 ~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 15 QKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 578899999999999999754432 2568899999999999999876532 344555556
No 166
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.42 E-value=0.0023 Score=72.82 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=64.1
Q ss_pred CCC-eEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc------
Q 008489 239 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS------ 310 (564)
Q Consensus 239 ~g~-~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~------ 310 (564)
.|. ++|-. |.+..+.+++.|...+. ..-++++.....+-.-+.++=+. | .|-||||+||+|-||-..
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI-~H~VLNAK~h~~EAeIVA~AG~~--G--aVTIATNMAGRGTDIkLg~~V~e~ 701 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKI-PHNVLNAKLHQKEAEIVAEAGQP--G--TVTIATNMAGRGTDIKLSPEVKAA 701 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC-cHHHhhccchhhHHHHHHhcCCC--C--cEEEeccCcCCCcCcccchhhHHc
Confidence 444 44444 78999999999988776 55566665443322222222222 3 599999999999999522
Q ss_pred ---EEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 311 ---RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 311 ---~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
+||-.. ++.|..--.|-.|||||-|..
T Consensus 702 GGL~VIgTe---------rheSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 702 GGLAIIGTE---------RHESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred CCCEEEEcc---------CCCcHHHHHHHhcccccCCCC
Confidence 344432 366888899999999999987
No 167
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=97.38 E-value=0.00011 Score=61.88 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhc-cCCCCCCCCcHHH
Q 008489 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF-TPGTLQVPKTQAA 491 (564)
Q Consensus 419 ~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ 491 (564)
+++.|..++++++++.+|..|+.+..+ | .+|+++++|+......|..+.+++++++ ..++|..+.+.+.
T Consensus 2 A~~~L~~Lgald~~~~lT~lG~~~~~l-P---l~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~ 71 (102)
T PF04408_consen 2 ALELLKSLGALDENGNLTPLGRKMSQL-P---LDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEE 71 (102)
T ss_dssp HHHHHHHTTSB-TTS-B-HHHHHHTTS-S---S-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHH
T ss_pred HHHHHHHCCCCCCCCCcCHHHHHHHHC-C---CchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHH
Confidence 457899999999999999999999999 9 7999999999999999999999998888 4566666554433
No 168
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.21 E-value=0.00086 Score=75.98 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=71.4
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHcCC---CEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESSS---SGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~~~---~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
..++.-|. ++..+ ..++.+++.|+.|+|||+.+ +..+.+.+ .++++.||--.|..+.+.. |.+...++
T Consensus 322 ~~l~~~Q~~Ai~~~--~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---g~~a~Tih 396 (720)
T TIGR01448 322 KGLSEEQKQALDTA--IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---GLTASTIH 396 (720)
T ss_pred CCCCHHHHHHHHHH--HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc---CCccccHH
Confidence 45777787 87777 45789999999999999985 33344333 4566799988887554432 33222111
Q ss_pred CccccccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccC-ccceEEEccCCCc
Q 008489 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAAV 199 (564)
Q Consensus 133 G~~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-~~~~~l~~~~~~~ 199 (564)
.--... .+. . ...........+++||||++|+... .+..++..+. ...+.++|+..-+
T Consensus 397 ~lL~~~-~~~-~---~~~~~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 397 RLLGYG-PDT-F---RHNHLEDPIDCDLLIVDESSMMDTW----LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred HHhhcc-CCc-c---chhhhhccccCCEEEEeccccCCHH----HHHHHHHhCCCCCEEEEECccccc
Confidence 100000 000 0 0000111246789999999998632 2333333333 2356667765433
No 169
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.21 E-value=0.0024 Score=72.31 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCeEEEcc--HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEEEecC
Q 008489 240 GDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFST 316 (564)
Q Consensus 240 g~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~VI~~~ 316 (564)
|..+++|| .+...-+...|.-+|. ...-+.|....++|...++.|+.......+|++|...+.|||+ ..|.|||||
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgy-lY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGY-LYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcce-EEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 44444443 3455555556655555 6778899999999999999999855566889999999999999 599999998
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..- .|.=-+++.-|+-|.|++.. -++|+|.++.
T Consensus 1355 sDw------NPtMDaQAQDrChRIGqtRD----VHIYRLISe~ 1387 (1958)
T KOG0391|consen 1355 SDW------NPTMDAQAQDRCHRIGQTRD----VHIYRLISER 1387 (1958)
T ss_pred CCC------CchhhhHHHHHHHhhcCccc----eEEEEeeccc
Confidence 721 12222333334444455444 7899998876
No 170
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.14 E-value=0.001 Score=61.38 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=74.5
Q ss_pred cccCCCeEEEc-cHHHHHHHHHHHHHcCC-CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecc--ccccccccC---
Q 008489 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN--- 308 (564)
Q Consensus 236 ~~~~g~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~--~~~~Gldip--- 308 (564)
+..+|.++||| |.+..+.+.+.+..... ..+.++.- ....+...++.|++ +.--||+|+. .+..|||+|
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--ECES
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecCCCch
Confidence 44567888888 89999999988876431 01122222 24456689999999 6677999998 999999995
Q ss_pred ccEEEecCccccCCc---------------------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 309 ISRIIFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 309 v~~VI~~~~~k~~~~---------------------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
++.||..+++.-... -..|.......|-+||+-|... +.|.++.+.+.
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~--D~g~i~llD~R 150 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED--DYGVIILLDSR 150 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEESGG
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC--CcEEEEEEcCc
Confidence 889998887753221 0122344668899999999876 56888888654
No 171
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=97.12 E-value=0.00068 Score=55.69 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HhhcCccchhhhcc-CCCCC
Q 008489 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATN-YSKKGIVQLREIFT-PGTLQ 484 (564)
Q Consensus 419 ~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~-~~~~~~~~i~~~~~-~~~~~ 484 (564)
+.+.|..++++++++.+|..|+.+..+ | .+|+++++|+..... .|....+++.+++. ..++.
T Consensus 2 A~~~L~~LgAld~~~~lT~lG~~m~~l-P---l~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~ 65 (92)
T smart00847 2 ALELLYELGALDDDGRLTPLGRKMAEL-P---LDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFP 65 (92)
T ss_pred HHHHHHHCCCcCCCCCcCHHHHHHHHC-C---CChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcC
Confidence 467889999999888899999999999 9 799999999999887 79999999987774 33443
No 172
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.05 E-value=0.002 Score=71.05 Aligned_cols=54 Identities=26% Similarity=0.180 Sum_probs=40.6
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc---C---CCEEEEccHHHHHHHHHHHHHh
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S---SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~---~---~~~li~~P~r~La~q~~~~l~~ 123 (564)
++..+ +.++.+++.|+.|+||||.+ +..+.+ . .++++++||--.|..+.+.+..
T Consensus 153 A~~~a--l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 153 AVALA--LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHH--hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 55555 66899999999999999985 233322 1 3578889999999888877654
No 173
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.00094 Score=65.88 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
.++++++.||+|+|||+.+. ..+.+.|..++......+..++...... |. ....+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~---------~~-------------~~~~l 154 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHA---------GR-------------LQAEL 154 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhc---------Cc-------------HHHHH
Confidence 47899999999999999963 3333444433333333444443321100 10 01123
Q ss_pred cccCcccEEEEccccccC
Q 008489 153 DVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~ 170 (564)
..+.+++++||||+|...
T Consensus 155 ~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 155 VKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred HHhccCCEEEEcccccCC
Confidence 345678999999999875
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.0011 Score=62.77 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcC--CCEEEEccHHH
Q 008489 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS--SSGIYCGPLRL 112 (564)
Q Consensus 63 ~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~--~~~li~~P~r~ 112 (564)
+.-|. .+..+. +.+.+++.||.|||||+.++ ..+.++ .+.+|+-|...
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 44555 555553 68899999999999999964 334342 25677777643
No 175
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.0015 Score=64.90 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
+++++++.||+|+|||+.+. ..+.+.|..++..+...|..++...... +. ..+.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~---------~~-------------~~~~l 162 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRE---------LQ-------------LESAI 162 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhC---------Cc-------------HHHHH
Confidence 57889999999999999853 3334445444444555566655432111 00 01234
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
..+.+++++||||++....
T Consensus 163 ~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 163 AKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred HHHhcCCEEEEeccccccC
Confidence 4567899999999998753
No 176
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.91 E-value=0.0016 Score=56.98 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
+++.+++.||+|+|||+.+-..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999974444
No 177
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.89 E-value=0.0013 Score=64.05 Aligned_cols=96 Identities=26% Similarity=0.258 Sum_probs=51.5
Q ss_pred EEEEccCCccHHHHHHHHHHcCCCEEEE---ccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecccc-
Q 008489 80 ILHVGPTNSGKTHQALSRLESSSSGIYC---GPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV- 155 (564)
Q Consensus 80 viv~apTGsGKT~~~~~~l~~~~~~li~---~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~l- 155 (564)
++|.|+.|||||+.+...+... +++ .|+..+..... ..........+.+..+...-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~s~~~~~~~~ 60 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR---LVVTVISPTIELYTEWL-----------------PDPPSKSVRTVDSFLKALVKP 60 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc---cccccccccceeccccc-----------------cccCCccccEEeEhhhccccc
Confidence 4799999999999887766555 333 33333332222 00000111122222222211
Q ss_pred CcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCc
Q 008489 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (564)
Q Consensus 156 ~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~ 199 (564)
..++.+||||++++.. |+... ++.......+.++|++.-.
T Consensus 61 ~~~~~liiDE~~~~~~---g~l~~-l~~~~~~~~~~l~GDp~Q~ 100 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP---GYLLL-LLSLSPAKNVILFGDPLQI 100 (234)
T ss_pred CcCCEEEEeccccCCh---HHHHH-HHhhccCcceEEEECchhc
Confidence 4699999999999752 33322 3333344567778876543
No 178
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.89 E-value=0.08 Score=55.93 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=76.1
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccc--cccccc-CccEEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRII 313 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~--~~Gldi-pv~~VI 313 (564)
..+.++||. |.-+-..+.+.|.+... ..+.+|--.++.+-...-..|.. |+.+||+-|-=+ =+=..| .|++||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~-sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENI-SFVQISEYTSNSDISRARSQFFH--GRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCC-eEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhHHhhhhhceecCCcEEE
Confidence 345566666 88888888899986655 78888888888888888888999 999999999632 234556 499999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+|+++.+ |.=..++....+.........+.+.|.++++.
T Consensus 376 FY~~P~~------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 376 FYGPPEN------PQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EECCCCC------hhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 9999542 22334444444443331111234778888764
No 179
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.00045 Score=65.15 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=24.4
Q ss_pred CceEEEEccCCccHHHHHHHHHHc----CCCEEEEcc
Q 008489 77 RKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P 109 (564)
+..+++.||+|+|||+.++..+.+ +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999999999998665532 345666655
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.84 E-value=0.00047 Score=60.38 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=25.4
Q ss_pred CceEEEEccCCccHHHHHHHHHHcC--C--CEEEEccHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESS--S--SGIYCGPLRL 112 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~--~--~~li~~P~r~ 112 (564)
++.+++.||+|||||+.+...+..- . .++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 5789999999999999975444332 2 4666655543
No 181
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.81 E-value=0.0049 Score=69.01 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeC
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G 133 (564)
+..++..|. ++-.+.. ...-.+|.|=+|+|||+.+ ++.|. .+++++..+=|..++..+.-+++..|+..--+..
T Consensus 667 ~~~LN~dQr~A~~k~L~-aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~ 745 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALA-AEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGS 745 (1100)
T ss_pred HhhcCHHHHHHHHHHHh-ccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCC
Confidence 456777787 6666643 3556899999999999995 44444 4567788899999999999999987776432211
Q ss_pred cccc-----------------------ccCCCceEEEcc-eecc---ccCcccEEEEccccccCCC
Q 008489 134 QERE-----------------------EVDGAKHRAVTV-EMAD---VVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 134 ~~~~-----------------------~~~~~~~i~~T~-e~~~---~l~~~~~vViDEaH~~~~~ 172 (564)
.++. ..+...++.||- ...+ ..+.+|++|||||-.+..+
T Consensus 746 ~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 746 EEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccccc
Confidence 1111 112445666664 2222 2478999999999998754
No 182
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.78 E-value=0.0062 Score=65.78 Aligned_cols=107 Identities=23% Similarity=0.265 Sum_probs=83.7
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCcc
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~ 318 (564)
.++++| -.+.+.-+.++|...+. ...-+.|+....+|....+.|.. +...-+|++|.+.|-|||+. .+.||||+.
T Consensus 1046 RvL~yfQMTkM~dl~EdYl~yr~Y-~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS- 1122 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLIEDYLVYRGY-TYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS- 1122 (1185)
T ss_pred eEEehhHHHHHHHHHHHHHHhhcc-ceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC-
Confidence 355566 45667777777776666 78899999999999999999998 45678899999999999995 999999987
Q ss_pred ccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 319 k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
...+..=.|-..||.|.|+. ..-.||++....
T Consensus 1123 --------DWNPT~D~QAMDRAHRLGQT-rdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1123 --------DWNPTADQQAMDRAHRLGQT-RDVTVYRLITRG 1154 (1185)
T ss_pred --------CCCcchhhHHHHHHHhccCc-cceeeeeecccc
Confidence 34555566777788887774 336678876544
No 183
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.76 E-value=0.0041 Score=72.73 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=82.0
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCC-eEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKH-LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~-~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~V 312 (564)
.+|.++|+| |.+..+.+++.|...... +...+-=+++...|....+.|+. ++-.||++|..+..|||+| .+.|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCcccCccccCCCceEEE
Confidence 457778877 799999999998764321 12222223333346689999998 6667999999999999995 6889
Q ss_pred EecCccccCCc-----------------c----ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~-----------------~----~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|..+++.-.+. . .-|...-.+.|-+||.=|... +.|.++.+...
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~--D~G~v~ilD~R 893 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET--DRGTVFVLDRR 893 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC--ceEEEEEecCc
Confidence 98887642221 0 112235567999999999875 46888888765
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.76 E-value=0.0034 Score=69.44 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=42.4
Q ss_pred Cccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc---C--CCEEEEccHHHHHHHHHHHHHh
Q 008489 64 RPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S--SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 64 ~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~---~--~~~li~~P~r~La~q~~~~l~~ 123 (564)
+.|. +.-.+ +.++.++|.|++|+|||+.+ +..+.+ . .++.++.||.-.|..+.+.+..
T Consensus 155 d~Qk~Av~~a--~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 155 DWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4455 55555 66899999999999999995 333322 1 2456779999999988887753
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.75 E-value=0.0026 Score=56.18 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P 109 (564)
.++.+++.||+|+|||+.+-..... +...+++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 4678999999999999986433322 344555543
No 186
>PRK08727 hypothetical protein; Validated
Probab=96.74 E-value=0.0039 Score=60.81 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=38.8
Q ss_pred CceEEEEccCCccHHHHHH---HHHHcCC-CEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLESSS-SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~~~-~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
...+++.||+|+|||+.+- ..+.+.+ +++|+ |...+.....+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~-~~~~~~~~~~~-------------------------------~~ 88 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL-PLQAAAGRLRD-------------------------------AL 88 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-eHHHhhhhHHH-------------------------------HH
Confidence 3569999999999998852 2233333 45554 33222222111 12
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+.+.+++++||||+|.+..
T Consensus 89 ~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 89 EALEGRSLVALDGLESIAG 107 (233)
T ss_pred HHHhcCCEEEEeCcccccC
Confidence 3446678999999998863
No 187
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.73 E-value=0.0026 Score=67.86 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred cCcHHHHHhcccCCCccccCCCCCC----ccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----------cCCCE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTR----PHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------SSSSG 104 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~----~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----------~~~~~ 104 (564)
.-++.|...|++. .-..++. +|. .-..+|.-+++.++|+|..|||||++|++++. +++.+
T Consensus 189 ~~dEvL~~~Lek~-----ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 189 GRDEVLQRVLEKN-----SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred hHHHHHHHHHHhc-----cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 4466777777776 3333433 344 44556667899999999999999999987763 34558
Q ss_pred EEEccHHHHHHHHHHHHHhcCCe
Q 008489 105 IYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 105 li~~P~r~La~q~~~~l~~~g~~ 127 (564)
+++.|.+....-+...|-++|..
T Consensus 264 lvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhccC
Confidence 99999999999999999888754
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0038 Score=65.20 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=51.8
Q ss_pred CceEEEEccCCccHHHHHHHH---HH-----cCCCEEEE--ccHHHHHHHHHHHHHh-cCCeeEEEeCccccccCCCceE
Q 008489 77 RKVILHVGPTNSGKTHQALSR---LE-----SSSSGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHR 145 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~---l~-----~~~~~li~--~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~~~~~i 145 (564)
.++++++||||+||||.+... +. ++.++.++ =+.|..|.++.+.+.+ +|+++.........
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l-------- 245 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDL-------- 245 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHH--------
Confidence 578999999999999996322 21 12344333 6667777776666664 67766432211000
Q ss_pred EEcceeccccCcccEEEEccccccC
Q 008489 146 AVTVEMADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 146 ~~T~e~~~~l~~~~~vViDEaH~~~ 170 (564)
...+..+.++++|+||++....
T Consensus 246 ---~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 ---KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred ---HHHHHHhCCCCEEEEcCCCCCc
Confidence 0112335789999999998764
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0032 Score=62.12 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=54.7
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
++.++++.||+|+|||+.+ ...+.+.|.-++.+++..++.++...+.. | ... .+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-~--------~~~------------~~l~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-G--------RLE------------EKLL 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc-C--------chH------------HHHH
Confidence 5789999999999999996 34455667778888888888888776654 1 100 0122
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
..+.+++++||||+=....
T Consensus 163 ~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 163 RELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred HHhhcCCEEEEecccCccC
Confidence 3478999999999876543
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.70 E-value=0.0013 Score=61.18 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
+++++++.||||+|||+.+. ..+.+.+..++..+...|...+.... ++.. ..+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~-----------~~~~-----------~~~~~ 103 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR-----------SDGS-----------YEELL 103 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH-----------CCTT-----------HCHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc-----------cccc-----------hhhhc
Confidence 47889999999999999963 34455555445556556655543210 0000 11234
Q ss_pred cccCcccEEEEcccccc
Q 008489 153 DVVSDYDCAVIDEIQML 169 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~ 169 (564)
..+.+++++||||+=..
T Consensus 104 ~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 104 KRLKRVDLLILDDLGYE 120 (178)
T ss_dssp HHHHTSSCEEEETCTSS
T ss_pred CccccccEeccccccee
Confidence 56788999999998543
No 191
>PRK12377 putative replication protein; Provisional
Probab=96.69 E-value=0.0044 Score=60.77 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=48.3
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecc
Q 008489 77 RKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~ 153 (564)
...+++.||+|+|||+.+ ...+.+.+..++..+...|..++...+.. +. ...+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~---------~~------------~~~~~l~ 159 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN---------GQ------------SGEKFLQ 159 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc---------cc------------hHHHHHH
Confidence 468999999999999995 34555555555555666666665544321 00 0113445
Q ss_pred ccCcccEEEEccccccC
Q 008489 154 VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 154 ~l~~~~~vViDEaH~~~ 170 (564)
.+.+++++||||++...
T Consensus 160 ~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQR 176 (248)
T ss_pred HhcCCCEEEEcCCCCCC
Confidence 67899999999997654
No 192
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0085 Score=70.00 Aligned_cols=108 Identities=24% Similarity=0.219 Sum_probs=87.4
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEEEecCcc
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMK 318 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~VI~~~~~ 318 (564)
.+++|. -.....-+...+...+ .....++|+++...|...++.|+++++..-++++|.+.+.|+|+ ..++||+++.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~- 790 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP- 790 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc-
Confidence 355555 3566666777777776 37999999999999999999999955567788888899999999 5999999998
Q ss_pred ccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 319 k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+..++...|...||.|.|+. ..-.+|.+...+
T Consensus 791 --------~wnp~~~~Qa~dRa~RigQ~-~~v~v~r~i~~~ 822 (866)
T COG0553 791 --------WWNPAVELQAIDRAHRIGQK-RPVKVYRLITRG 822 (866)
T ss_pred --------ccChHHHHHHHHHHHHhcCc-ceeEEEEeecCC
Confidence 77999999999999998875 445567776655
No 193
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.62 E-value=0.0051 Score=60.73 Aligned_cols=108 Identities=20% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHH---HcCCCEEEEccHHHHHHHHHHHHH----hcCCeeEE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRL---ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCDL 130 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l---~~~~~~li~~P~r~La~q~~~~l~----~~g~~~~~ 130 (564)
..|...|- ..-.. .+|+ ++...||-|||+++ +.+. +.+..+=|+....-||..=++.+. .+|+.++.
T Consensus 76 ~~p~~vQll~~l~L--~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 76 LRPYDVQLLGALAL--HKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp ----HHHHHHHHHH--HTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CcccHHHHhhhhhc--ccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 34555665 22222 3454 99999999999995 2222 344556566777778876666665 46999999
Q ss_pred EeCccccc----cCCCceEEEcceec--c-------------ccCcccEEEEccccccCC
Q 008489 131 ITGQEREE----VDGAKHRAVTVEMA--D-------------VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 131 ~~G~~~~~----~~~~~~i~~T~e~~--~-------------~l~~~~~vViDEaH~~~~ 171 (564)
++++.... .....|+++|..-+ | ...+++++||||||.+..
T Consensus 152 ~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 152 ITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp EETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred CccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 98876432 22567999997322 1 247899999999998754
No 194
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.57 E-value=0.0027 Score=71.88 Aligned_cols=126 Identities=18% Similarity=0.151 Sum_probs=78.8
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cC--CCEEEEccHHHHHHHHHHHHHhc--CCeeEEEeCcccc-
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SS--SSGIYCGPLRLLAWEVAKRLNKA--NVSCDLITGQERE- 137 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-----~~--~~~li~~P~r~La~q~~~~l~~~--g~~~~~~~G~~~~- 137 (564)
|+-... .++-|-|+.-+.|-|||.+.+..+. ++ |--+|++||-.+-+. .-.|+++ |+++-..+|..+.
T Consensus 626 WLatLY-eknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnW-EMElKRwcPglKILTYyGs~kEr 703 (1958)
T KOG0391|consen 626 WLATLY-EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNW-EMELKRWCPGLKILTYYGSHKER 703 (1958)
T ss_pred HHHHHH-HhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhh-hHHHhhhCCcceEeeecCCHHHH
Confidence 444333 3577889999999999999643332 22 334999999776543 3334444 7888777785322
Q ss_pred -------ccCCCceEEEcceeccc-------cCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccC
Q 008489 138 -------EVDGAKHRAVTVEMADV-------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196 (564)
Q Consensus 138 -------~~~~~~~i~~T~e~~~~-------l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~ 196 (564)
...++-|++.|...+-+ -.++.++|+||+|.+.. .+.-.|..+|---....+.++|.+
T Consensus 704 keKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn-fksqrWQAllnfnsqrRLLLtgTP 775 (1958)
T KOG0391|consen 704 KEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN-FKSQRWQALLNFNSQRRLLLTGTP 775 (1958)
T ss_pred HHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc-hhHHHHHHHhccchhheeeecCCc
Confidence 12366788888755421 27899999999999974 234446554433333445555543
No 195
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.54 E-value=0.0043 Score=62.56 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CC-----CEEEEccHHHHHHHHHHHHHhc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~-~~-----~~li~~P~r~La~q~~~~l~~~ 124 (564)
+++++++.+|||+|||++++... .. .. +++|+.+|..+..|....+++.
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 57899999999999999975433 22 22 6899999999988887777664
No 196
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.54 E-value=0.0043 Score=62.56 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CC-----CEEEEccHHHHHHHHHHHHHhc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~-~~-----~~li~~P~r~La~q~~~~l~~~ 124 (564)
+++++++.+|||+|||++++... .. .. +++|+.+|..+..|....+++.
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 57899999999999999975433 22 22 6899999999988887777664
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.52 E-value=0.0057 Score=60.84 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcC-CCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~-~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.+..+++.||||+|||+.+ ...+.+. +..++..+...+..++...+... .+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~------------------------~~~ 171 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLL------------------------EAK 171 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHH------------------------HHH
Confidence 4678999999999999985 3444443 44444445455554443322100 012
Q ss_pred ccccCcccEEEEccccc
Q 008489 152 ADVVSDYDCAVIDEIQM 168 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~ 168 (564)
+..+.+++++||||+|.
T Consensus 172 ~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 172 LNRMKKVEVLFIDDLFK 188 (266)
T ss_pred HHHhcCCCEEEEecccc
Confidence 34457899999999976
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.0083 Score=58.70 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=46.2
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceeccc
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~ 154 (564)
..+++.|++|+|||+.+ ...+...+..+++.+...+...+...+... +. ...+.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~---------~~-----------~~~~~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS---------ET-----------SEEQLLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc---------cc-----------cHHHHHHH
Confidence 57999999999999995 344555555555555555544443332110 00 00123445
Q ss_pred cCcccEEEEccccccCCC
Q 008489 155 VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 155 l~~~~~vViDEaH~~~~~ 172 (564)
+.+++++||||++.....
T Consensus 160 l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTES 177 (244)
T ss_pred hccCCEEEEeCCCCCCCC
Confidence 678999999999987643
No 199
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.49 E-value=0.005 Score=59.55 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.+..+++.||+|+|||+.+-
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999999973
No 200
>PRK10536 hypothetical protein; Provisional
Probab=96.45 E-value=0.0023 Score=62.40 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcCC--CEEEEccHH
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSS--SGIYCGPLR 111 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~----l~~~~--~~li~~P~r 111 (564)
+.-.+..|. .+-.+ .++..+++.||+|||||+.+... +.++. ++++.-|..
T Consensus 57 i~p~n~~Q~~~l~al--~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 57 ILARNEAQAHYLKAI--ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred ccCCCHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 344444555 33333 34779999999999999997443 33332 345555554
No 201
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.093 Score=59.08 Aligned_cols=94 Identities=17% Similarity=0.015 Sum_probs=56.6
Q ss_pred CceEEEEccCCccHHHHHHHHH-H---cCCCEEEEccHHHHHHHHHHH----HHhcCCeeEEEeCcccc----ccCCCce
Q 008489 77 RKVILHVGPTNSGKTHQALSRL-E---SSSSGIYCGPLRLLAWEVAKR----LNKANVSCDLITGQERE----EVDGAKH 144 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l-~---~~~~~li~~P~r~La~q~~~~----l~~~g~~~~~~~G~~~~----~~~~~~~ 144 (564)
+..-+...-||-|||+++..+. + .++.+.++...-=||.--++. +.-+|..+++...+... ....+.+
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~~DI 172 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYACDI 172 (822)
T ss_pred cCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHhcCc
Confidence 3445888999999999973222 2 233344444444455433333 33569999987665432 2236677
Q ss_pred EEEcceec--c-------------ccCcccEEEEccccccC
Q 008489 145 RAVTVEMA--D-------------VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 145 i~~T~e~~--~-------------~l~~~~~vViDEaH~~~ 170 (564)
...|.--+ | ...+..+.|+||++-+.
T Consensus 173 tY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 173 TYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 77775221 1 13668889999998774
No 202
>PF13173 AAA_14: AAA domain
Probab=96.36 E-value=0.016 Score=50.82 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc---CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES---SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~---~~~~li~ 107 (564)
+++.+++.||.|+|||+.+.+.+.+ ..+.+|+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceee
Confidence 4788999999999999998766643 2455665
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.34 E-value=0.0043 Score=63.01 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcC----CCEEEEccHHHHHHHHHHHHHh
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ESS----SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~~----~~~li~~P~r~La~q~~~~l~~ 123 (564)
.++.++|.|..|||||+++...+ ... .+++++.+|+.+|.++.+|+.+
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 47889999999999999975443 223 3689999999999999999986
No 204
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.28 E-value=0.0074 Score=57.53 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
.++++.||+|+|||+.|-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 479999999999999873
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.28 E-value=0.0089 Score=68.14 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=61.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~--~-~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
..++.-|. ++..+.. .++.+++.|++|+|||+.+ + ..+.. +.++++++||--.|..+.+. .|+....+..-
T Consensus 351 ~~Ls~~Q~~Av~~i~~-s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~---~g~~a~Ti~~~ 426 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG-SGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE---SGIESRTLASL 426 (744)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc---cCCceeeHHHH
Confidence 34777787 7776642 3578999999999999995 2 22333 45678889998877665432 24432222111
Q ss_pred cccccCCCceEEEcceeccccCcccEEEEccccccCC
Q 008489 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 135 ~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~ 171 (564)
.... ......+...+++||||+-++..
T Consensus 427 ~~~~----------~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 427 EYAW----------ANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred Hhhh----------ccCcccCCCCcEEEEECcccCCH
Confidence 0000 00012356889999999999863
No 206
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.28 E-value=0.028 Score=63.61 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRII 313 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~VI 313 (564)
.+|.++|+| |.+....+.+.+...........+|..+.+ +.++.|...... -++|+|..+..|||+| .+.||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 567888888 789899999998765542345667776665 788888872111 7999999999999995 77899
Q ss_pred ecCccccCCc---------------------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~---------------------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..+.+.-++. -..|.....+.|-+||+=|... +.|.++.+...-
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~--D~G~ivllD~R~ 618 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED--DRGVIVLLDKRY 618 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC--CceEEEEecccc
Confidence 8887753221 1233356789999999999654 569998887643
No 207
>PRK06893 DNA replication initiation factor; Validated
Probab=96.26 E-value=0.0051 Score=59.81 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+++.||+|+|||+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999985
No 208
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.26 E-value=0.0065 Score=63.42 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=57.2
Q ss_pred hcCCceEEEEccCCccHHHHH--HHHHHcC--CCEEEEccHHHHHHHH-H-HHHH-hcCCeeEEEeCccccccCCCceEE
Q 008489 74 KKVRKVILHVGPTNSGKTHQA--LSRLESS--SSGIYCGPLRLLAWEV-A-KRLN-KANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 74 ~~~~~~viv~apTGsGKT~~~--~~~l~~~--~~~li~~P~r~La~q~-~-~~l~-~~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
..++.++++.||-|+|||+.. +...+.. ..+++++||-.+|..+ - ..+. -+++++... ... ..-+-
T Consensus 19 ~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~----~~~---~~~~~ 91 (364)
T PF05970_consen 19 NEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNN----EKS---QCKIS 91 (364)
T ss_pred ccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccccc----ccc---ccccc
Confidence 356889999999999999995 3333332 3578889999999877 2 2222 234443211 000 00001
Q ss_pred EcceeccccCcccEEEEccccccCC
Q 008489 147 VTVEMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH~~~~ 171 (564)
....+...+.+.+++||||+=++..
T Consensus 92 ~~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 92 KNSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred ccchhhhhhhhheeeecccccchhH
Confidence 1124456789999999999999863
No 209
>PRK08116 hypothetical protein; Validated
Probab=96.22 E-value=0.011 Score=58.88 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=45.6
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceeccc
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~ 154 (564)
..+++.|++|+|||+.+ ...+.+.+..++..+...+...+...+...+ .. ...+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--------~~-----------~~~~~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--------KE-----------DENEIIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--------cc-----------cHHHHHHH
Confidence 45999999999999996 3445545555555565556555544332110 00 01123455
Q ss_pred cCcccEEEEcccccc
Q 008489 155 VSDYDCAVIDEIQML 169 (564)
Q Consensus 155 l~~~~~vViDEaH~~ 169 (564)
+.+++++||||++.-
T Consensus 176 l~~~dlLviDDlg~e 190 (268)
T PRK08116 176 LVNADLLILDDLGAE 190 (268)
T ss_pred hcCCCEEEEecccCC
Confidence 678899999999753
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.21 E-value=0.012 Score=57.36 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+++.||+|+|||+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999986
No 211
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.16 E-value=0.12 Score=56.68 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=57.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCe-eEEEecccccccccc-CccEEEecCccccCCccccccCHhhHHhhhccCCCC
Q 008489 266 CSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343 (564)
Q Consensus 266 v~~lhg~l~~~~R~~~~~~F~~~~g~~-~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~ 343 (564)
-.-+.|..+..+|++.++.|+++.|-. -++++|.+...|||+ ....+|.++.. +....=.|.+-|.-|+
T Consensus 764 y~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~---------wnpchdaqavcRvyrY 834 (1387)
T KOG1016|consen 764 YLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDAC---------WNPCHDAQAVCRVYRY 834 (1387)
T ss_pred eecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEee---------cCccccchhhhhhhhh
Confidence 345778899999999999999965544 789999999999999 64454444331 1333344555566666
Q ss_pred CCCCCcEEEEEecCC
Q 008489 344 GSKFPVGEVTCLDSE 358 (564)
Q Consensus 344 g~~~~~G~~~~l~~~ 358 (564)
|+. ...+||++.-+
T Consensus 835 GQ~-KpcfvYRlVmD 848 (1387)
T KOG1016|consen 835 GQQ-KPCFVYRLVMD 848 (1387)
T ss_pred cCc-CceeEEeehhh
Confidence 653 23788888544
No 212
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.14 E-value=0.033 Score=63.17 Aligned_cols=114 Identities=23% Similarity=0.274 Sum_probs=78.2
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCC--CCCeeEEEeccccccccccC---ccEE
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNLN---ISRI 312 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~--~g~~~VlVaT~~~~~Gldip---v~~V 312 (564)
+|..+|+| |.+..+.+++.|..... .-...+|..+ |...++.|++. .++-.||++|..+..|||+| .+.|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~~~---~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGDQP---RQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCCch---HHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 34567777 78889999988875433 2344466543 45777777641 14556999999999999995 7899
Q ss_pred EecCccccCCc-----------------c----ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~-----------------~----~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|..+++.-.+. . ..|.-...+.|-+||.=|... +.|.++.+...
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~--D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ--DRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC--ceEEEEEEccc
Confidence 98887653221 0 112234468899999999875 45888888765
No 213
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.13 E-value=0.03 Score=64.23 Aligned_cols=46 Identities=15% Similarity=-0.042 Sum_probs=35.8
Q ss_pred CceEEEEccCCccHHHHHHHHHHc---C---CCEEEEccHHHHHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLES---S---SSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~---~---~~~li~~P~r~La~q~~~~l~ 122 (564)
..++.+.++||+|||.+++..+.+ . .+.||++|+.+.-..+.+-+.
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhh
Confidence 478999999999999987655432 2 357889999998887776654
No 214
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.0079 Score=64.62 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+..++.||.|+|||+.|
T Consensus 35 ~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 35 PQSILLVGASGVGKTTCA 52 (491)
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999987
No 215
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.07 E-value=0.013 Score=58.85 Aligned_cols=80 Identities=26% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCceEEEEccCCccHHHHHHH---HHH-c-C-CCEEEE--ccHHHHHHHHHHHHHh-cCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALS---RLE-S-S-SSGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~---~l~-~-~-~~~li~--~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
++++++++||||+||||.+.. .+. . + .++.++ =|.|..+.+....+.+ +|+++...... . .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~--~-----~--- 262 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP--K-----E--- 262 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCH--H-----H---
Confidence 367899999999999999632 222 3 2 345444 5556666555555543 45554321100 0 0
Q ss_pred EcceeccccCcccEEEEccc
Q 008489 147 VTVEMADVVSDYDCAVIDEI 166 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEa 166 (564)
....+..+.++++|+||.+
T Consensus 263 -l~~~l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 263 -LRKALDRLRDKDLILIDTA 281 (282)
T ss_pred -HHHHHHHccCCCEEEEeCC
Confidence 0122334567899999975
No 216
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.06 E-value=0.023 Score=66.53 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=73.4
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
..|+.-|. ++..+. ..++.++++|+.|+||||.. ...+.. +.+++.+.|+--.|..+.+ ..|++...+..-
T Consensus 380 ~~Ls~eQ~~Av~~i~-~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e---~~Gi~a~TIas~ 455 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA-GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEK---EAGIQSRTLSSW 455 (1102)
T ss_pred CCCCHHHHHHHHHHh-ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHH---hhCCCeeeHHHH
Confidence 46788888 776653 45789999999999999994 233333 3467778999877766543 236665544332
Q ss_pred cccccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccC--ccceEEEccCC
Q 008489 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPA 197 (564)
Q Consensus 135 ~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~--~~~~~l~~~~~ 197 (564)
......+ -..+..-+++||||+.|+... .+..++-... ...+.++|++.
T Consensus 456 ll~~~~~----------~~~l~~~~vlVIDEAsMv~~~----~m~~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 456 ELRWNQG----------RDQLDNKTVFVLDEAGMVASR----QMALFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred HhhhccC----------ccCCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEECCHH
Confidence 1111000 123566789999999998632 2223332222 24566777654
No 217
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.96 E-value=2.3e-05 Score=85.71 Aligned_cols=146 Identities=8% Similarity=-0.142 Sum_probs=95.9
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCC-----eEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKH-----LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~-----~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
.++..|+++ .+.....+...+++.... .+...|......+...+.+..-. +.+.+...|....+.+... ..
T Consensus 651 pgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~s--tniaetsiTidd~v~vid~cka 728 (1282)
T KOG0921|consen 651 PGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILS--TNIAETSITIDDVVYVIDSCKA 728 (1282)
T ss_pred CchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccc--cceeeEeeeecceeEEEeeeee
Confidence 445555555 566677777777665332 35566777766644344444444 7888888888888877774 66
Q ss_pred EEEecCccc----c-----CCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhCCCChhhhhcCCCC
Q 008489 311 RIIFSTMKK----F-----DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 381 (564)
Q Consensus 311 ~VI~~~~~k----~-----~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~~~~~ei~~~~l~~ 381 (564)
+|+.+...+ | ......+.+.....||.|||+|... +.++...++. ...+|...+.+|+.......
T Consensus 729 ~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs----~arF~~l~~~--~t~em~r~plhemalTikll 802 (1282)
T KOG0921|consen 729 KEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCS----RARFEALEDH--GTAEMFRTPLHEIALTIKLL 802 (1282)
T ss_pred eeeeeccccceeeeeeecccccchHhhcccCceecccccccccH----HHHHHHHHhc--CcHhhhcCccHHHHhhHHHH
Confidence 677444322 1 1223556677888999999999887 6676666554 56678899999998776666
Q ss_pred cHHHHHHHHh
Q 008489 382 NFDLIYMYSR 391 (564)
Q Consensus 382 ~~~~l~~~~~ 391 (564)
....++.|..
T Consensus 803 ~l~SI~~fl~ 812 (1282)
T KOG0921|consen 803 RLGSIGEFLG 812 (1282)
T ss_pred HhhhHHHHHh
Confidence 6666666553
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.93 E-value=0.016 Score=59.30 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
.++++++.||||+|||+.+ ...+.+.+..++..+...|..++...... .... ....+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~---------~~~~-----------~~~~~ 241 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFN---------NDKE-----------LEEVY 241 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhc---------cchh-----------HHHHH
Confidence 3588999999999999985 34455556555556666665555431100 0000 00114
Q ss_pred cccCcccEEEEccccccC
Q 008489 153 DVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~ 170 (564)
..+.+++++|||+.+...
T Consensus 242 ~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEK 259 (329)
T ss_pred HHhccCCEEEEeccCCCC
Confidence 567789999999998864
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=95.88 E-value=0.018 Score=57.10 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCceEEEEccCCccHHHHHHHH---HHcCC-CEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 76 VRKVILHVGPTNSGKTHQALSR---LESSS-SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~---l~~~~-~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.+.++++.||+|+|||+.+... +...| ++.|+ +...+..++...... + ... ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l~~a~~~-~--------~~~-------------~~ 157 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQLSTAQRQ-G--------RYK-------------TT 157 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHHHHHHHC-C--------cHH-------------HH
Confidence 4788999999999999996322 22334 55554 434454444322111 0 000 01
Q ss_pred c-cccCcccEEEEccccccCC
Q 008489 152 A-DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~-~~l~~~~~vViDEaH~~~~ 171 (564)
+ ..+...+++||||++....
T Consensus 158 ~~~~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 158 LQRGVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred HHHHhcCCCEEEEcccccCCC
Confidence 1 1235678999999997643
No 220
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.86 E-value=0.02 Score=55.45 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+++.||+|+|||+.+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999986
No 221
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.85 E-value=0.011 Score=66.84 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=34.9
Q ss_pred CceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKR 120 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~ 120 (564)
++..++.||||+|||++++.... .++++||-..|..|-.|+..+
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 37899999999999999743322 456778889999999999643
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.023 Score=58.90 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=48.3
Q ss_pred CCceEEEEccCCccHHHHHHHH----HHcCC--CEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSR----LESSS--SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~----l~~~~--~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
++.+++++||||+||||.+... +...+ ++.++ =+.|.-+.+..+.+. .+|+++........-
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l--------- 206 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL--------- 206 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH---------
Confidence 4789999999999999996332 23333 34333 234555655555554 456655432211000
Q ss_pred EcceeccccCcccEEEEcccccc
Q 008489 147 VTVEMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH~~ 169 (564)
...+..+.+.++|+||++=..
T Consensus 207 --~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 207 --QLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred --HHHHHHhcCCCEEEEcCCCCC
Confidence 012234577899999999544
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.69 E-value=0.071 Score=56.67 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCceEEEEccCCccHHHHHHH---HHH--cC-CCEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALS---RLE--SS-SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~---~l~--~~-~~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
.+++++++||||+||||.+.. .+. .. .++.++ =|.|..+.+....+. .+|+++........
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~---------- 289 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE---------- 289 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHh----------
Confidence 367899999999999998532 222 33 345444 566766655555444 35655433211100
Q ss_pred EcceeccccCcccEEEEcccccc
Q 008489 147 VTVEMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH~~ 169 (564)
-...+..+.++++|+||.+-..
T Consensus 290 -l~~~l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 290 -LAKALEQLRDCDVILIDTAGRS 311 (424)
T ss_pred -HHHHHHHhCCCCEEEEeCCCCC
Confidence 0012233467999999998654
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.61 E-value=0.026 Score=57.32 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=45.1
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCC-CEEEE-ccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESSS-SGIYC-GPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~~-~~li~-~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
.++.+++.||+|+|||+.+ ...+.+.+ ++.++ .| .++.++...+.. +. ..+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~--~l~~~lk~~~~~---------~~-------------~~~ 210 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP--EFIRELKNSISD---------GS-------------VKE 210 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH--HHHHHHHHHHhc---------Cc-------------HHH
Confidence 3568999999999999995 33344444 44444 44 455554433321 00 123
Q ss_pred eccccCcccEEEEccccccC
Q 008489 151 MADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 151 ~~~~l~~~~~vViDEaH~~~ 170 (564)
.+..+.+++++||||+..-.
T Consensus 211 ~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 211 KIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred HHHHhcCCCEEEEecCCCcc
Confidence 45567899999999997654
No 225
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.57 E-value=0.037 Score=61.35 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=84.0
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCC--CCCeeEEEecccccccccc-------
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNL------- 307 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~--~g~~~VlVaT~~~~~Gldi------- 307 (564)
..|..+|.| |.+..+.+++.|..... ....+.|..++ |...++.|+.. .+.-.||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 566777766 79999999999977554 34566676643 23688888871 1356799999999999999
Q ss_pred -C---ccEEEecCcccc--C-----------Cc---cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 308 -N---ISRIIFSTMKKF--D-----------GV---ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 308 -p---v~~VI~~~~~k~--~-----------~~---~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
| +..||+...+.- | |. ...|...-.++|-+||.=|...+-..|.+..+.+.
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 888997776621 1 11 12233455688999999998763336999999876
No 226
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.55 E-value=0.02 Score=66.58 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~ 134 (564)
..|+.-|. ++..+.. .++.+++.|+.|+||||.. ...+.. +.+++.+.||-..|..+.+ ..|+....+..-
T Consensus 345 ~~Ls~eQr~Av~~il~-s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e---~tGi~a~TI~sl 420 (988)
T PRK13889 345 LVLSGEQADALAHVTD-GRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG---GSGIASRTIASL 420 (988)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh---ccCcchhhHHHH
Confidence 35788888 8777642 3457899999999999983 222223 4467888999887765543 124332222111
Q ss_pred cccccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhcc--CccceEEEccCC
Q 008489 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPA 197 (564)
Q Consensus 135 ~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l--~~~~~~l~~~~~ 197 (564)
...... -.+.+...+++||||+-|+... .+..++-.. ....+.++|+..
T Consensus 421 l~~~~~----------~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garvVLVGD~~ 471 (988)
T PRK13889 421 EHGWGQ----------GRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKVVLVGDPQ 471 (988)
T ss_pred Hhhhcc----------cccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEEEEECCHH
Confidence 000000 0123567899999999998632 223333211 233566666543
No 227
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.013 Score=64.53 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||.|+|||+.|.
T Consensus 37 ~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567999999999999973
No 228
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.54 E-value=0.029 Score=60.15 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=52.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcc--
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~-- 149 (564)
.+..+++.|++|+|||+.+++... .+++++|+.- .+...|+..+...+|....- +.+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~-------------l~~~~e~~ 144 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGLPSDN-------------LYLLAETN 144 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCCChhc-------------EEEeCCCC
Confidence 377999999999999999876654 3457788753 34456777777776653210 111111
Q ss_pred --eecccc--CcccEEEEccccccC
Q 008489 150 --EMADVV--SDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 --e~~~~l--~~~~~vViDEaH~~~ 170 (564)
++...+ .+.++||||+++.+.
T Consensus 145 l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 145 LEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred HHHHHHHHHhhCCCEEEEechhhhc
Confidence 111111 468999999999774
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.53 E-value=0.031 Score=57.81 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=49.9
Q ss_pred CCceEEEEccCCccHHHHH----HHHH--HcCCCE-EEE-ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQA----LSRL--ESSSSG-IYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~----~~~l--~~~~~~-li~-~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
+++++.++||||-||||.. ..+. ....++ ++. =-.|.-|.++.+..+ -+|+++.++.....-.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~-------- 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELA-------- 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHH--------
Confidence 3889999999999999994 2333 223344 554 455666666666555 4677665533211100
Q ss_pred EcceeccccCcccEEEEccccc
Q 008489 147 VTVEMADVVSDYDCAVIDEIQM 168 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH~ 168 (564)
+....+.++|+|.||=+=+
T Consensus 274 ---~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 274 ---EAIEALRDCDVILVDTAGR 292 (407)
T ss_pred ---HHHHHhhcCCEEEEeCCCC
Confidence 1223467889999987744
No 230
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.53 E-value=0.016 Score=65.53 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=47.5
Q ss_pred ccCCCCCCccc-cc-hHHHhc-CCceEEEEccCCccHHHHHHHHHHc-----CCCEEEEccHHHHHHHHHHHHH
Q 008489 57 FDFTDLTRPHT-WY-PLARKK-VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 57 ~~~~~~~~~q~-~~-p~~~~~-~~~~viv~apTGsGKT~~~~~~l~~-----~~~~li~~P~r~La~q~~~~l~ 122 (564)
+....+++.|. .+ ...... +++.+++.||||+|||+.++.+.+. ..+++|..+|+.+-.|+.++..
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 35567777777 33 222333 4555999999999999997544432 2578899999999999988755
No 231
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.52 E-value=0.016 Score=43.51 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.5
Q ss_pred CceEEEEccCCccHHHH--HHHHHHcC
Q 008489 77 RKVILHVGPTNSGKTHQ--ALSRLESS 101 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~--~~~~l~~~ 101 (564)
++.+++.||+|||||+. |++.++-.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 56899999999999999 56666544
No 232
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.50 E-value=0.05 Score=55.89 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=48.3
Q ss_pred CceEEEEccCCccHHHHHHHHHHcC-CCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecccc
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~-~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~l 155 (564)
=.+.|+.||+|+|||+.|-..-... ....-+..+..-..++.+.+.+. +.....
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a-------------------------~~~~~~ 102 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEA-------------------------RKNRLL 102 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHH-------------------------HHHHhc
Confidence 3578999999999999973222121 22233333333333332222210 000001
Q ss_pred CcccEEEEccccccCCCCCcchHHHHHhccC-ccceEEEccCCC
Q 008489 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 198 (564)
Q Consensus 156 ~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-~~~~~l~~~~~~ 198 (564)
.+=.+++|||+|.+.-. -.+++|-.. ...+.++|.++.
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCC
Confidence 12248899999998643 245665543 445677776543
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.46 E-value=0.029 Score=53.13 Aligned_cols=84 Identities=25% Similarity=0.205 Sum_probs=46.8
Q ss_pred ceEEEEccCCccHHHHHH----HHHHcCCCE-EEE-ccHHHHHHHHHHHHH-hcCCeeEEEeCcc-ccccCCCceEEEcc
Q 008489 78 KVILHVGPTNSGKTHQAL----SRLESSSSG-IYC-GPLRLLAWEVAKRLN-KANVSCDLITGQE-REEVDGAKHRAVTV 149 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~----~~l~~~~~~-li~-~P~r~La~q~~~~l~-~~g~~~~~~~G~~-~~~~~~~~~i~~T~ 149 (564)
++++++||||+||||.+. ....++.++ ++. =..|.-|.++.+.+. .+|+++....-.. ... + ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~-----~---~~ 73 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE-----I---AR 73 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-----H---HH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-----H---HH
Confidence 578999999999999953 233344444 333 556777776666666 4576654422110 000 0 00
Q ss_pred eeccc--cCcccEEEEcccccc
Q 008489 150 EMADV--VSDYDCAVIDEIQML 169 (564)
Q Consensus 150 e~~~~--l~~~~~vViDEaH~~ 169 (564)
+.+.. .+++|+|+||-+-+-
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSS
T ss_pred HHHHHHhhcCCCEEEEecCCcc
Confidence 11111 256899999998654
No 234
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.0067 Score=64.62 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+.+++.||.|+|||+.|-.
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999999743
No 235
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.40 E-value=0.022 Score=61.75 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||.|+|||+.|
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999997
No 236
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.016 Score=63.08 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+-.++.||.|+|||+.|
T Consensus 39 ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 39 HAYLFTGTRGVGKTTIS 55 (509)
T ss_pred eeEEEECCCCCCHHHHH
Confidence 45799999999999997
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.33 E-value=0.027 Score=60.61 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=43.4
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcC--C-CEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLESS--S-SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~~~--~-~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
..+++.||+|+|||+.+ ...+.+. + +++|+ +...+..++...+... ...+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~----------------------~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN----------------------TMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC----------------------cHHHH
Confidence 45899999999999985 2333332 2 34444 5455555554444220 00122
Q ss_pred ccccCcccEEEEccccccCC
Q 008489 152 ADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~~ 171 (564)
...+.+++++||||+|.+..
T Consensus 206 ~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 206 KEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHhcCCEEEEehhhhhcC
Confidence 23456789999999999753
No 238
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.29 E-value=0.042 Score=57.26 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcc--
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~-- 149 (564)
.+..+++.|++|+|||+.+++... .+++++|+.-. +...|+..+...+|+... .+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-------------~l~l~~e~~ 146 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGISTE-------------NLYLLAETN 146 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCcc-------------cEEEEccCc
Confidence 378999999999999999876553 23577887432 334567767666664321 1111111
Q ss_pred --eeccc--cCcccEEEEccccccC
Q 008489 150 --EMADV--VSDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 --e~~~~--l~~~~~vViDEaH~~~ 170 (564)
++... -.+.++||||++|.+.
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11111 2478999999999874
No 239
>PTZ00293 thymidine kinase; Provisional
Probab=95.21 E-value=0.031 Score=53.13 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCe-eEEEeCccccccCCCceEEEc-c
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQEREEVDGAKHRAVT-V 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~-~~~~~G~~~~~~~~~~~i~~T-~ 149 (564)
.|...++.||.|||||+..++.+. .+.+++++-|... .|.. +.. +....|... ..+.+.. .
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D------tR~~--~~~~I~Sh~g~~~-----~a~~v~~~~ 69 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD------TRYS--DEQNISSHDKQML-----KAIKVSKLK 69 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc------ccCC--CCCcEEecCCCcc-----eeEEcCCHH
Confidence 377889999999999998776554 3456777777521 1110 111 111111110 1111111 1
Q ss_pred eeccccCcccEEEEccccccC
Q 008489 150 EMADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 e~~~~l~~~~~vViDEaH~~~ 170 (564)
++...+.++++|.|||+|-+.
T Consensus 70 e~~~~~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 70 EVLETAKNYDVIAIDEGQFFP 90 (211)
T ss_pred HHHHhccCCCEEEEEchHhhH
Confidence 333345789999999999984
No 240
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.19 E-value=0.11 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=23.8
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~ 110 (564)
++..++.||.+||||+..++.+. .+.+++++-|.
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 35678999999999999876653 23456666664
No 241
>PRK14974 cell division protein FtsY; Provisional
Probab=95.17 E-value=0.029 Score=57.56 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=49.3
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcCC-CEEEE-c-cHHHHH-HHHHHHHHhcCCeeEEEeCccccccCCCceEEEcc
Q 008489 77 RKVILHVGPTNSGKTHQA---LSRLESSS-SGIYC-G-PLRLLA-WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV 149 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~---~~~l~~~~-~~li~-~-P~r~La-~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~ 149 (564)
...++++|++|+||||.+ ...+.+.+ +++++ . +.|.-+ .|+......+|+++.. +..... ...+ ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~~~g~d--p~~v---~~ 212 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--HKYGAD--PAAV---AY 212 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--ccCCCC--HHHH---HH
Confidence 568999999999999974 23344444 55555 2 345555 4544455567776532 111000 0000 00
Q ss_pred eecc--ccCcccEEEEccccccCC
Q 008489 150 EMAD--VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 150 e~~~--~l~~~~~vViDEaH~~~~ 171 (564)
.... ...++++|+||.++....
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHT 236 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCccCC
Confidence 1111 235689999999998753
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.068 Score=48.02 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.2
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
..+++.|++|+||||.+..
T Consensus 6 mki~ITG~PGvGKtTl~~k 24 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK 24 (179)
T ss_pred eEEEEeCCCCccHHHHHHH
Confidence 4689999999999998743
No 243
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.03 Score=61.67 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.4
Q ss_pred ccCcccEEEEccccccCC
Q 008489 154 VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 154 ~l~~~~~vViDEaH~~~~ 171 (564)
...+++++||||+|+++.
T Consensus 115 ~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 115 AQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred hcCCceEEEEECCCcCCH
Confidence 457899999999999974
No 244
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.019 Score=64.00 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+-+|++||.|+|||+.+.
T Consensus 39 HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456899999999999964
No 245
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.028 Score=64.37 Aligned_cols=19 Identities=37% Similarity=0.530 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
++-+|+.||.|+|||+.+.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~ 55 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSAR 55 (824)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3457999999999999973
No 246
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.07 E-value=0.032 Score=63.59 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=47.3
Q ss_pred ccCCCCCCccc-----cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcC---CCEEEEccHHHHHHHHHHHHHh
Q 008489 57 FDFTDLTRPHT-----WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS---SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 57 ~~~~~~~~~q~-----~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~---~~~li~~P~r~La~q~~~~l~~ 123 (564)
|.+..+++.|. .+..+ ..+++.++.+|||+|||++.+ .+..+. .+++|+..|..=..|+.+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l--~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSL--DRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHh--ccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 55666677776 22222 358899999999999999964 333322 4789999998888888888775
No 247
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.06 E-value=0.014 Score=58.25 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=49.3
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCC----------CEEEE-ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceE
Q 008489 78 KVILHVGPTNSGKTHQALSRLESSS----------SGIYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHR 145 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~~----------~~li~-~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i 145 (564)
.+++++|+||-|||+.+-.+...++ .++++ .|...-....|..+- .+|.+...-.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~--------- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAK--------- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHH---------
Confidence 6799999999999999855554332 24444 666665556665544 45655422100000
Q ss_pred EEcceecccc--CcccEEEEccccccCC
Q 008489 146 AVTVEMADVV--SDYDCAVIDEIQMLGC 171 (564)
Q Consensus 146 ~~T~e~~~~l--~~~~~vViDEaH~~~~ 171 (564)
........+ -++.++||||+|.+..
T Consensus 133 -~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 133 -LEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred -HHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 000111222 5688999999999854
No 248
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.024 Score=59.22 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||.|+|||+.+-
T Consensus 39 h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred eEEEEecCCCCCHHHHHH
Confidence 447999999999999974
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.03 E-value=0.021 Score=51.52 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=21.2
Q ss_pred eEEEEccCCccHHHHHHHHHH----cCCCEEEEc
Q 008489 79 VILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~----~~~~~li~~ 108 (564)
.+++.||+|+|||+.+...+. .++.++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 368999999999998644332 345666663
No 250
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.95 E-value=0.024 Score=56.05 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
...+.+..||.|+|||..++.
T Consensus 56 ~lp~~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHH
Confidence 356899999999999999743
No 251
>PRK05642 DNA replication initiation factor; Validated
Probab=94.94 E-value=0.073 Score=51.90 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=37.6
Q ss_pred ceEEEEccCCccHHHHHHH---HHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecc
Q 008489 78 KVILHVGPTNSGKTHQALS---RLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~---~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~ 153 (564)
..+++.||+|+|||+.+-. .+.+ +.+++|+. ...+.... .....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~~~-------------------------------~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLDRG-------------------------------PELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHhhh-------------------------------HHHHH
Confidence 5689999999999998422 1222 33455543 33332210 12233
Q ss_pred ccCcccEEEEccccccC
Q 008489 154 VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 154 ~l~~~~~vViDEaH~~~ 170 (564)
.+.+++++|||++|...
T Consensus 94 ~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 94 NLEQYELVCLDDLDVIA 110 (234)
T ss_pred hhhhCCEEEEechhhhc
Confidence 45677899999999875
No 252
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.93 E-value=0.19 Score=44.74 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=58.6
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC---ccEEEecCccccCCc--------------c-cc----
Q 008489 269 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFSTMKKFDGV--------------E-LR---- 326 (564)
Q Consensus 269 lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip---v~~VI~~~~~k~~~~--------------~-~~---- 326 (564)
+.-+....+....++.|++. ++..||++|.-+..|+|+| .+.||..+++...+. . ..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~-~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEA-CENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEeCCChhHHHHHHHHHHHc-CCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 33334444567889999872 2226999998899999995 678998887653221 0 11
Q ss_pred ---ccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 327 ---DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 327 ---p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
|.....+.|-+||+=|... +.|.++.+..
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~--D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGAN--DYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcC--ceEEEEEEec
Confidence 2234678899999999876 4577777654
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.92 E-value=0.039 Score=58.53 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=41.7
Q ss_pred ceEEEEccCCccHHHHHH---HHHHcC---CCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 78 KVILHVGPTNSGKTHQAL---SRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~---~~l~~~---~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
..+++.||+|+|||+.+- ..+.+. .+++|+ +...+..++...+.. + . ..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~~-~--------~-------------~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALRN-N--------K-------------MEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHHc-C--------C-------------HHHH
Confidence 458999999999999952 233332 345565 333444444333321 0 0 0112
Q ss_pred ccccCcccEEEEccccccCC
Q 008489 152 ADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~~ 171 (564)
...+.+++++||||+|.+..
T Consensus 194 ~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 194 KEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHhCCEEEEehhhhhcC
Confidence 23345688999999998753
No 254
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.80 E-value=0.033 Score=59.08 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=22.6
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHH
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~ 96 (564)
.+-.+....+-.+++.|||||||||....
T Consensus 249 ~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 249 RLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 55555555678899999999999999543
No 255
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.80 E-value=0.034 Score=54.32 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.||+|||||+.+.+.+.+ +.+++|+. +-+-..++.+++..+|..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 4789999999999999998776653 44677775 344566777777776654
No 256
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.76 E-value=0.083 Score=50.97 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=43.8
Q ss_pred ceEEEEccCCccHHHHH---HHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~~---~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
..+++.||+|+|||+.. ...+.+ +.+++|+ +-..........+... . +.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~-~~~~f~~~~~~~~~~~---------~-------------~~~~ 91 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL-SAEEFIREFADALRDG---------E-------------IEEF 91 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE-EHHHHHHHHHHHHHTT---------S-------------HHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee-cHHHHHHHHHHHHHcc---------c-------------chhh
Confidence 35899999999999973 122222 3345554 3345555555544431 0 1223
Q ss_pred ccccCcccEEEEccccccCC
Q 008489 152 ADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~~ 171 (564)
.+.+..+++++||.+|.+..
T Consensus 92 ~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 92 KDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHHCTSSEEEEETGGGGTT
T ss_pred hhhhhcCCEEEEecchhhcC
Confidence 35567899999999999874
No 257
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.032 Score=61.51 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+..+++||.|+|||+.+
T Consensus 38 ~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455788999999999997
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.051 Score=56.17 Aligned_cols=83 Identities=22% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCceEEEEccCCccHHHHHHH---HHH-cCCCEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQALS---RLE-SSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~---~l~-~~~~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
.+++++++||||+||||.+.. .+. ++.++.++ =|.|.-|.++.+... ..|+++... ..... +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~--~dp~d------L--- 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA--TSPAE------L--- 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec--CCHHH------H---
Confidence 478999999999999999522 222 33445443 466765555444444 456544321 10000 0
Q ss_pred ceeccc---cCcccEEEEcccccc
Q 008489 149 VEMADV---VSDYDCAVIDEIQML 169 (564)
Q Consensus 149 ~e~~~~---l~~~~~vViDEaH~~ 169 (564)
...+.. ..++++|+||=+=..
T Consensus 274 ~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCC
Confidence 011111 246899999987553
No 259
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.69 E-value=0.049 Score=56.02 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+++++.||+|+|||+.+-.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CCcEEEECCCCccHHHHHHH
Confidence 35799999999999999753
No 260
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.69 E-value=0.38 Score=52.98 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=74.5
Q ss_pred HHHHHhcccCCCccccCCCCCCccccchHHHhcCCceEEEEccCCccHHHHHH---HHHH---cCCCEEEEccHHHHHHH
Q 008489 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE---SSSSGIYCGPLRLLAWE 116 (564)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~---~~l~---~~~~~li~~P~r~La~q 116 (564)
+.+..+++.. |++..++.. .+.. .+.+-.++..|==.|||.... ..++ .+-+++|++|.+..+..
T Consensus 229 ~r~~~~lk~~----Fdi~~~s~~--~~~~---fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~ 299 (738)
T PHA03368 229 ERVERFLRTV----FNTPLFSDA--AVRH---FRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEP 299 (738)
T ss_pred HHHHHHHHHH----cCCccccHH--HHHH---hhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHH
Confidence 3444444444 455555433 3332 346788999999999999742 2222 35578999999999999
Q ss_pred HHHHHHhc------CCeeEEEeCccc--cccCC--CceEEEcceeccc--cCcccEEEEccccccCCC
Q 008489 117 VAKRLNKA------NVSCDLITGQER--EEVDG--AKHRAVTVEMADV--VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 117 ~~~~l~~~------g~~~~~~~G~~~--~~~~~--~~~i~~T~e~~~~--l~~~~~vViDEaH~~~~~ 172 (564)
+++++... +..+..+.|+.. ....+ +.+.+.+..-.+. -..++++||||||.+.+.
T Consensus 300 vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 300 VFEEIGARLRQWFGASRVDHVKGETISFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred HHHHHHHHHhhhcchhheeeecCcEEEEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH
Confidence 99988742 222334455322 12223 2555554432222 357999999999999864
No 261
>PHA00729 NTP-binding motif containing protein
Probab=94.69 E-value=0.11 Score=49.86 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
-.++++.|++|+|||+.|..
T Consensus 17 f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred eEEEEEECCCCCCHHHHHHH
Confidence 35799999999999999744
No 262
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.67 E-value=0.023 Score=58.48 Aligned_cols=39 Identities=31% Similarity=0.248 Sum_probs=27.4
Q ss_pred cCCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLL 113 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~---~~l~~~~~~li~~P~r~L 113 (564)
..+++++++|||||||||..- ..+-...+.+.+..+.++
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 368999999999999999852 222233466666666554
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.67 E-value=0.043 Score=51.15 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=34.0
Q ss_pred eEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 79 VILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+++.||+|+|||+.+.+.+. ++.+++|+.. .+...++.+++..+|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGWD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 378999999999999765543 3456777743 45566777777766654
No 264
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.032 Score=61.85 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=15.9
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+...+++++||||+|+++.
T Consensus 115 p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred cccCCceEEEEEChhhCCH
Confidence 4457899999999999974
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.079 Score=55.03 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=44.9
Q ss_pred CceEEEEccCCccHHHHHHH---HHHcC-CCEEEE--ccHHHHHHHHHHHH-HhcCCeeEEEeCccccccCCCceEEEcc
Q 008489 77 RKVILHVGPTNSGKTHQALS---RLESS-SSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTV 149 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~---~l~~~-~~~li~--~P~r~La~q~~~~l-~~~g~~~~~~~G~~~~~~~~~~~i~~T~ 149 (564)
.+.+.++||||+||||.+.. .+... .++.++ =|.|..+.+..... ...|+++.... .... + .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~--d~~~------L---~ 309 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR--DEAA------M---T 309 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC--CHHH------H---H
Confidence 47899999999999999622 23333 355444 36675555444433 34455543211 0000 0 0
Q ss_pred eecccc---CcccEEEEcccccc
Q 008489 150 EMADVV---SDYDCAVIDEIQML 169 (564)
Q Consensus 150 e~~~~l---~~~~~vViDEaH~~ 169 (564)
..+..+ .++|+|+||-+=..
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred HHHHHHHhccCCCEEEEeCcccc
Confidence 111112 35899999988554
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.066 Score=57.68 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=46.7
Q ss_pred CCceEEEEccCCccHHHHHHHH---H-HcC--CCEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSR---L-ESS--SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~---l-~~~--~~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
.++++.++||||+||||.+... + ..+ .++.++ =+.|..+.++..... .+|+.+........
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~---------- 418 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES---------- 418 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH----------
Confidence 4789999999999999996322 2 222 344443 345666555444433 34444322110000
Q ss_pred EcceeccccCcccEEEEcccccc
Q 008489 147 VTVEMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH~~ 169 (564)
-...+..+.++++|+||.+=..
T Consensus 419 -L~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 419 -LLDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred -HHHHHHHhccCCEEEecCCCcc
Confidence 0122334578999999999654
No 267
>PRK04195 replication factor C large subunit; Provisional
Probab=94.60 E-value=0.064 Score=58.27 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.2
Q ss_pred CceEEEEccCCccHHHHHHHHHHc
Q 008489 77 RKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
.+.+++.||+|+|||+.+-....+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997544433
No 268
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.56 E-value=0.042 Score=53.17 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=34.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.||+|||||+.+.+.+. + +.+++|+. +.+-..++.++++.+|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCc
Confidence 478999999999999999877664 4 56777773 233346667777776653
No 269
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.015 Score=64.41 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.5
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
-.++.||.|+|||+.+
T Consensus 40 AyLf~Gp~GvGKTTlA 55 (647)
T PRK07994 40 AYLFSGTRGVGKTTIA 55 (647)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999997
No 270
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.50 E-value=0.053 Score=55.36 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=48.3
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHc-CCCEEEE-c-cHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC-G-PLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~-~~~~li~-~-P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
+++.+.++||+|+||||.+. ..+.. +++++++ . +.|..|.+....+. ..++++... .... +.. .+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~---dpa---~~ 184 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGA---DPA---SV 184 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCC---CHH---HH
Confidence 46789999999999999952 22333 3456555 3 44666555444443 445543221 1100 000 00
Q ss_pred c-ee--ccccCcccEEEEccccccC
Q 008489 149 V-EM--ADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 149 ~-e~--~~~l~~~~~vViDEaH~~~ 170 (564)
. +. .....++++||||=+-...
T Consensus 185 v~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 185 AFDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 0 11 1124789999999887654
No 271
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.49 E-value=0.1 Score=51.70 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE---ccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC---GPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~---~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..++|.||+|+|||+.+++.+. ++.+++|+ .|...+..++.++...+|..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 478999999999999999877654 34578887 44444555555555555543
No 272
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.014 Score=66.13 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+-.|+.||.|+|||+.+-
T Consensus 39 HAyLFtGPpGtGKTTLAR 56 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLAR 56 (944)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 446899999999999973
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.46 E-value=0.073 Score=56.59 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=47.1
Q ss_pred CceEEEEccCCccHHHHHH---HHHHcCC-CEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEEcc
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLESSS-SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~~~-~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~T~ 149 (564)
..+++++|++|+||||.+. ..+.+.+ +++++ =+.|..|.++.+.+. ..|+++..... .. + ..- ...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~-~~----d-~~~-i~~ 167 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD-NK----D-AVE-IAK 167 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCC-cc----C-HHH-HHH
Confidence 5689999999999999962 3344433 55444 344666655555554 45665422110 00 0 000 001
Q ss_pred eeccccCcccEEEEcccccc
Q 008489 150 EMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 150 e~~~~l~~~~~vViDEaH~~ 169 (564)
+.+.....+++||||.+-..
T Consensus 168 ~al~~~~~~DvVIIDTAGr~ 187 (437)
T PRK00771 168 EGLEKFKKADVIIVDTAGRH 187 (437)
T ss_pred HHHHHhhcCCEEEEECCCcc
Confidence 22233455699999999543
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.45 E-value=0.065 Score=56.02 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.4
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~ 95 (564)
-++.|++..||+|+|||+.+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHH
Confidence 368999999999999998863
No 275
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.041 Score=61.14 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+|+.||.|+|||+.+.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3568999999999999973
No 276
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.038 Score=61.16 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+-.++.||.|+|||+.+
T Consensus 39 ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVS 55 (618)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44699999999999997
No 277
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.039 Score=54.80 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
+...|++++||||||||+.|
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 45678999999999999886
No 278
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.018 Score=62.93 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+-.++.||.|+|||+.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A 55 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLA 55 (527)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45689999999999997
No 279
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.17 E-value=0.08 Score=53.77 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.3
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+++++.||+|+|||+.+-.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5689999999999988743
No 280
>PLN03025 replication factor C subunit; Provisional
Probab=94.17 E-value=0.22 Score=50.98 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
..++++.||+|+|||+.+.
T Consensus 34 ~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999999973
No 281
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.13 E-value=0.12 Score=49.60 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=34.1
Q ss_pred CCceEEEEccCCccHHHHHHH---HHHcCC-CE-EEEccHHHHHHHHHHHHHh
Q 008489 76 VRKVILHVGPTNSGKTHQALS---RLESSS-SG-IYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~---~l~~~~-~~-li~~P~r~La~q~~~~l~~ 123 (564)
++++.+.+.-+|.|||+++.. .++.++ +- .+++| ++|..|.++.+..
T Consensus 40 ~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 40 SGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRS 91 (229)
T ss_pred CCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHH
Confidence 468899999999999999743 234444 43 34577 5688888888773
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.13 E-value=0.093 Score=56.16 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=42.9
Q ss_pred ceEEEEccCCccHHHHH---HHHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecc
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~ 153 (564)
+.+++.||+|+|||+.+ ...+. .+.+++|+.. ..+..+....+.. |.. .+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~~~-------------~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------GEM-------------QRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------chH-------------HHHHH
Confidence 45899999999999985 23333 3456666643 3444444433321 100 01112
Q ss_pred ccCcccEEEEccccccCC
Q 008489 154 VVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 154 ~l~~~~~vViDEaH~~~~ 171 (564)
.+..+++++|||+|.+..
T Consensus 199 ~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 199 FYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HcccCCEEEEcchhhhcC
Confidence 345789999999999863
No 283
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.047 Score=60.15 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+-+|++||.|+|||+.+
T Consensus 39 HA~LFtGP~GvGKTTLA 55 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLS 55 (700)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45799999999999997
No 284
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.092 Score=51.54 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=40.7
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceeccccCc
Q 008489 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSD 157 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~l~~ 157 (564)
.++++.||+|-||||.|.- ++ +++|.++....|..-.. +..+ ..++..+..
T Consensus 53 DHvLl~GPPGlGKTTLA~I--------------------IA---~Emgvn~k~tsGp~leK---~gDl---aaiLt~Le~ 103 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI--------------------IA---NELGVNLKITSGPALEK---PGDL---AAILTNLEE 103 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH--------------------HH---HHhcCCeEecccccccC---hhhH---HHHHhcCCc
Confidence 5799999999999998732 11 23455554443322111 0000 123456788
Q ss_pred ccEEEEccccccCC
Q 008489 158 YDCAVIDEIQMLGC 171 (564)
Q Consensus 158 ~~~vViDEaH~~~~ 171 (564)
-|++.|||+|.++-
T Consensus 104 ~DVLFIDEIHrl~~ 117 (332)
T COG2255 104 GDVLFIDEIHRLSP 117 (332)
T ss_pred CCeEEEehhhhcCh
Confidence 89999999999863
No 285
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.11 Score=55.05 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=35.4
Q ss_pred CcccEEEEccccccCCCCCcch---------HHHHHhc-cC----ccceEEEccCCCchHHHHHHHHcCC
Q 008489 156 SDYDCAVIDEIQMLGCKTRGFS---------FTRALLG-IC----ANELHLCGDPAAVPLIQQILQVTGD 211 (564)
Q Consensus 156 ~~~~~vViDEaH~~~~~~rg~~---------~~~~ll~-l~----~~~~~l~~~~~~~~~~~~l~~~~g~ 211 (564)
+.+-+||+||++-+-- +||.. ....||. +- -.++.++|++.-.+++.+-+-.+|+
T Consensus 323 SgLHIIIFDEiDAICK-qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGR 391 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICK-QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGR 391 (744)
T ss_pred CCceEEEehhhHHHHH-hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCc
Confidence 5567899999998733 34332 1222222 21 1467899999888888777777776
No 286
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.00 E-value=0.14 Score=62.17 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHH---Hc--CCCEEEEccHHHHHHHHHHHHHhcCCeeEE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l---~~--~~~~li~~P~r~La~q~~~~l~~~g~~~~~ 130 (564)
..+++-|. ++..+..-.++.++|.|..|+|||+.. +..+ .+ +.+++.++||--.|..+. +.|++...
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~Gi~A~T 909 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 909 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----HhCchHhh
Confidence 36788888 888776556789999999999999994 3332 22 234677899988876664 33554332
Q ss_pred EeCccccccCCCceEEEcceeccccCcccEEEEccccccCC
Q 008489 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 131 ~~G~~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~ 171 (564)
+..--.... . ..... -......+++||||+=|++.
T Consensus 910 IasfL~~~~----~-~~~~~-~~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 910 LASFLHDTQ----L-QQRSG-ETPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred HHHHhcccc----c-hhhcc-cCCCCCCcEEEEEccccccH
Confidence 221110000 0 00000 01123468999999999864
No 287
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.97 E-value=0.15 Score=62.72 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHH---Hc--CCCEEEEccHHHHHHHHHHHHHhcCCeeEE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~--~-~~l---~~--~~~~li~~P~r~La~q~~~~l~~~g~~~~~ 130 (564)
..+++-|. ++..+....++.++|.|..|+|||+.. + ..+ .+ +.+++.++||--.|..+. +.|++...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~Gi~A~T 1041 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 1041 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcCcchhh
Confidence 46788888 888886555689999999999999994 2 222 12 235677899988776553 34654432
Q ss_pred EeCccccccCCCceEEEcceeccccCcccEEEEccccccCC
Q 008489 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 131 ~~G~~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~ 171 (564)
++.--... .. ....--......+++||||+=|++.
T Consensus 1042 I~s~L~~~----~~--~~~~~~~~~~~~~llIVDEaSMv~~ 1076 (1747)
T PRK13709 1042 LASFLHDT----QL--QQRSGETPDFSNTLFLLDESSMVGN 1076 (1747)
T ss_pred HHHHhccc----cc--ccccccCCCCCCcEEEEEccccccH
Confidence 22211000 00 0000001123458999999999863
No 288
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.93 E-value=0.016 Score=54.80 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=18.0
Q ss_pred eEEEEccCCccHHHHHHHH-HH---cCCCEEEE
Q 008489 79 VILHVGPTNSGKTHQALSR-LE---SSSSGIYC 107 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~-l~---~~~~~li~ 107 (564)
..+++|.+|||||+-+... +. +.|+.||.
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 4689999999999998666 43 34666665
No 289
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.93 E-value=0.07 Score=54.02 Aligned_cols=38 Identities=39% Similarity=0.434 Sum_probs=27.4
Q ss_pred CCceEEEEccCCccHHHHH--H-HHHHc---CCCEEEEccHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA--L-SRLES---SSSGIYCGPLRLL 113 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~-~~l~~---~~~~li~~P~r~L 113 (564)
.+++++++|||||||||.+ + ..+.+ ..+++++.-..++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 5789999999999999995 2 23322 3566777666665
No 290
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.92 E-value=0.059 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=18.6
Q ss_pred HHhcCCceEEEEccCCccHHHHH
Q 008489 72 ARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 72 ~~~~~~~~viv~apTGsGKT~~~ 94 (564)
+...++--++|.|||||||||..
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHH
Confidence 33346778999999999999984
No 291
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.90 E-value=0.29 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
...++++.||+|+|||+.+-
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999999963
No 292
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.021 Score=61.55 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||+|+|||+.|-
T Consensus 37 ~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347999999999999973
No 293
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.81 E-value=0.087 Score=57.05 Aligned_cols=55 Identities=27% Similarity=0.239 Sum_probs=43.8
Q ss_pred ceEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 78 KVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~--~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
.+++++||||||||+.+ +..+...+.+|+.=|--+|....+..+++.|.+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 57999999999999984 44444456778889999999999888888777666553
No 294
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.79 E-value=0.075 Score=53.91 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=44.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C---CCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---SSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----~---~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
.|+.-.+..|. ++.....-.-+.|.+.|+.|||||..|+.+-+. . .+.|+.=|+.. .|..+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp-----------vG~dI 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP-----------VGEDI 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC-----------ccccc
Confidence 46666666666 777775445677999999999999998654332 1 35566555532 35556
Q ss_pred EEEeCcc
Q 008489 129 DLITGQE 135 (564)
Q Consensus 129 ~~~~G~~ 135 (564)
+.+.|.+
T Consensus 293 GfLPG~e 299 (436)
T COG1875 293 GFLPGTE 299 (436)
T ss_pred CcCCCch
Confidence 6666643
No 295
>PRK05973 replicative DNA helicase; Provisional
Probab=93.79 E-value=0.081 Score=51.45 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=36.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..++|.|++|+|||+.+++.+.+ +.+++|+. .-+-..++.+++..+|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS-lEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT-LEYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-EeCCHHHHHHHHHHcCCC
Confidence 4789999999999999998766543 34566662 222246777787777654
No 296
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.73 E-value=0.16 Score=54.59 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCceEEEEccCCccHHHHHHHH---H-HcCC--CEEEE--ccHHHHHHHHHHHHHh-cCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSR---L-ESSS--SGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~---l-~~~~--~~li~--~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
+++++.++||||+||||.+... + .+.| ++.++ -+.|.-+.+..+.+.+ +|+++.........
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl--------- 325 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADL--------- 325 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhH---------
Confidence 3678999999999999996321 2 2332 44333 5567777766666553 46544321110000
Q ss_pred EcceeccccCcccEEEEcccc
Q 008489 147 VTVEMADVVSDYDCAVIDEIQ 167 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEaH 167 (564)
...+..+.++++++||.+=
T Consensus 326 --~~aL~~L~d~d~VLIDTaG 344 (484)
T PRK06995 326 --RLALSELRNKHIVLIDTIG 344 (484)
T ss_pred --HHHHHhccCCCeEEeCCCC
Confidence 0012345677899999953
No 297
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.71 E-value=0.11 Score=55.67 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=43.9
Q ss_pred ceEEEEccCCccHHHHH---HHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 78 KVILHVGPTNSGKTHQA---LSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~---~~~l~~---~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
..+++.|++|+|||+.+ ...+.+ +.+++|+ +...+..++...+.... +. ..+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-~~~~f~~~~~~~l~~~~-------~~-------------~~~~ 200 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-SGDEFARKAVDILQKTH-------KE-------------IEQF 200 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHHhh-------hH-------------HHHH
Confidence 45899999999999885 222222 2344554 44566666665554310 00 0112
Q ss_pred ccccCcccEEEEccccccCC
Q 008489 152 ADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~~ 171 (564)
...+.+++++||||+|.+..
T Consensus 201 ~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 201 KNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHHhccCCEEEEeccccccC
Confidence 23356789999999998863
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.70 E-value=0.23 Score=52.89 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.8
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
...+++.||+|+|||+.+-.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARI 55 (413)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34789999999999999744
No 299
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.67 E-value=0.068 Score=56.26 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=42.4
Q ss_pred eEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 79 VILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 79 ~viv~apTGsGKT~~~--~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
+++++||||||||+.+ +..+...+.+|++=|--++....+...++.|-+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 4789999999999884 34444456788889999999888887777787776654
No 300
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.64 E-value=0.26 Score=55.86 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
..++++.||+|+|||+.+-
T Consensus 52 ~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999999973
No 301
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.63 E-value=0.15 Score=58.63 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=56.7
Q ss_pred EEEEccCCccHHHHHH-HHHH---cCCCEEEEccHHHHHHHHHHH----HHhcCCeeEEEeCc-----cccccCCCceEE
Q 008489 80 ILHVGPTNSGKTHQAL-SRLE---SSSSGIYCGPLRLLAWEVAKR----LNKANVSCDLITGQ-----EREEVDGAKHRA 146 (564)
Q Consensus 80 viv~apTGsGKT~~~~-~~l~---~~~~~li~~P~r~La~q~~~~----l~~~g~~~~~~~G~-----~~~~~~~~~~i~ 146 (564)
-|..+.||-|||+++. ...+ .+..+-++...--||.-=++. +.-+|+.|+++... +++....+.|++
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~aY~~DItY 264 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRKAYNADITY 264 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHHHHHhCCCccee
Confidence 3789999999999962 2222 223333333334455333333 33469999987542 233344788888
Q ss_pred Eccee--ccc-------------cCcccEEEEccccccCC
Q 008489 147 VTVEM--ADV-------------VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 147 ~T~e~--~~~-------------l~~~~~vViDEaH~~~~ 171 (564)
+|..- +|. ...+.+.||||++.++.
T Consensus 265 gTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILI 304 (1112)
T PRK12901 265 GTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLI 304 (1112)
T ss_pred cCCCccccccchhccccchHhhhCcCCceeEeechhhhhh
Confidence 88621 121 36799999999998743
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.064 Score=58.57 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||.|+|||+.+.
T Consensus 39 ha~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGR 56 (546)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999999973
No 303
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.60 E-value=0.047 Score=54.42 Aligned_cols=37 Identities=27% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcC-CCEEEEccHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLESS-SSGIYCGPLRL 112 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~~-~~~li~~P~r~ 112 (564)
.+.+++++|||||||||..- ..+-.. .+++++.-..+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 48999999999999999962 233334 45555544433
No 304
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=0.25 Score=56.38 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCC------CeEEEEcCCCCHHHHHHHHHHHhCC--CCCeeEEEec--cccccccc
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGK------HLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVAS--DAIGMGLN 306 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~------~~v~~lhg~l~~~~R~~~~~~F~~~--~g~~~VlVaT--~~~~~Gld 306 (564)
.+|.++||| |....+.+.+.+.+.+. .+-...-+. ...++..+++.|+.. .+.--|++|+ ..+..|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 478888888 78888888777764321 012222222 124667889999641 1334599999 88999999
Q ss_pred cC---ccEEEecCccccCCc------------------cc-cc---cCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 307 LN---ISRIIFSTMKKFDGV------------------EL-RD---LTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 307 ip---v~~VI~~~~~k~~~~------------------~~-~p---~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
++ .+.||..+++..... .. .+ .....+.|-+||+=|... +.|.++.+..
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~--D~G~iillD~ 673 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD--DYGSIVLLDK 673 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC--ceEEEEEEeh
Confidence 93 899999888762211 00 01 123567899999999876 4688777754
No 305
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.058 Score=56.14 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=19.5
Q ss_pred chHHHhcCCceEEEEccCCccHHHHH
Q 008489 69 YPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 69 ~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.....++++.|+||+|||..+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 34444444557999999999999995
No 306
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.062 Score=59.28 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.8
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+|+.||.|+|||+.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIAR 56 (624)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568899999999999973
No 307
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.53 E-value=0.2 Score=51.10 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=14.9
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+.+++.||+|+|||+.+-.
T Consensus 44 ~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 3456689999999998743
No 308
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.13 Score=56.69 Aligned_cols=45 Identities=33% Similarity=0.486 Sum_probs=33.7
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCE-EEE--ccHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSG-IYC--GPLRLLAWEVAKR 120 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~~~~~~-li~--~P~r~La~q~~~~ 120 (564)
.|++|.++||.||||||++ ++.+++-..+ |.+ .|.+.+-....++
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 5899999999999999997 5666664333 333 8888877666553
No 309
>PHA00350 putative assembly protein
Probab=93.52 E-value=0.61 Score=48.84 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=22.1
Q ss_pred eEEEEccCCccHHHHHHHH-H---HcCCCEEEE
Q 008489 79 VILHVGPTNSGKTHQALSR-L---ESSSSGIYC 107 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~-l---~~~~~~li~ 107 (564)
..++.|..|||||+-+... + ++.|+.+|.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999998653 2 456777765
No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.51 E-value=0.069 Score=54.46 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCceEEEEccCCccHHHHH--H-HHHH---cCCCEEEEccHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA--L-SRLE---SSSSGIYCGPLRLL 113 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~-~~l~---~~~~~li~~P~r~L 113 (564)
.+++++++|+|||||||.. + ..+. .+.+.+.+....+|
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 5789999999999999995 2 2221 22345555555454
No 311
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=93.47 E-value=0.22 Score=56.01 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=63.8
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhCCCCC--eeEEEecccccccccc-CccEEEecCccccCCccccccCHhhHHhhhccCC
Q 008489 265 LCSIVYGSLPPETRTRQATRFNDASSE--FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (564)
Q Consensus 265 ~v~~lhg~l~~~~R~~~~~~F~~~~g~--~~VlVaT~~~~~Gldi-pv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaG 341 (564)
....+.|+...+.|....+.|++|.+. +-.||+|.+.+-|+|+ -+.+||++|.. +.++-=.|-+=|+-
T Consensus 1190 DyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas---------WNPSyDtQSIFRvy 1260 (1567)
T KOG1015|consen 1190 DYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDAS---------WNPSYDTQSIFRVY 1260 (1567)
T ss_pred ceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecc---------cCCccchHHHHHHH
Confidence 466788999999999999999996543 4689999999999999 68899988773 24555566677777
Q ss_pred CCCCCCCcEEEEEecC
Q 008489 342 RYGSKFPVGEVTCLDS 357 (564)
Q Consensus 342 R~g~~~~~G~~~~l~~ 357 (564)
|+|+. -.-++|+|..
T Consensus 1261 RfGQt-KPvyiYRfiA 1275 (1567)
T KOG1015|consen 1261 RFGQT-KPVYIYRFIA 1275 (1567)
T ss_pred hhcCc-Cceeehhhhh
Confidence 77764 2266777643
No 312
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.47 E-value=0.051 Score=55.83 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLL 113 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~~~~li~~P~r~L 113 (564)
.+++++++|+|||||||.. +..+-...+++.+.-+.++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 5889999999999999995 2223333455555444443
No 313
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.42 E-value=0.19 Score=63.20 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHH---Hc--CCCEEEEccHHHHHHHHHHHHHhcCCeeEE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l---~~--~~~~li~~P~r~La~q~~~~l~~~g~~~~~ 130 (564)
..+++-|. ++..+....++.++|.|+.|+|||+.. ...+ .+ +.+++.++||-..|.++. +.|++...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~g~~a~T 1093 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SAGVQAQT 1093 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hcCCchHh
Confidence 46888888 888876556789999999999999996 1222 22 335677899988776664 33554322
Q ss_pred EeCccccccCCCceEEEcceeccccCcccEEEEccccccC
Q 008489 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 131 ~~G~~~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~ 170 (564)
+..-.... .. ......+...+++||||+=|+.
T Consensus 1094 i~s~l~~~----~~----~~~~~~~~~~~v~ivDEasMv~ 1125 (1960)
T TIGR02760 1094 LDSFLTDI----SL----YRNSGGDFRNTLFILDESSMVS 1125 (1960)
T ss_pred HHHHhcCc----cc----ccccCCCCcccEEEEEcccccc
Confidence 21110000 00 0000124567899999999986
No 314
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.40 E-value=0.094 Score=52.13 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=19.6
Q ss_pred chHHHhcCCceEEEEccCCccHHHHH
Q 008489 69 YPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 69 ~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
+..+....+..+++.|||||||||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 33333345668999999999999985
No 315
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.35 E-value=0.17 Score=54.43 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH---c-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEE-cc-
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE---S-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV-TV- 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~---~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~-T~- 149 (564)
.+..+++.|++|+|||+.+++.+. . +++++|+..- +-..|+..+...+|+... .+.+. ..
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-------------~l~~~~e~~ 158 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPEP-------------NLYVLSETN 158 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCChH-------------HeEEcCCCC
Confidence 478999999999999999876643 2 3578888542 334677777666664321 01110 00
Q ss_pred --eeccc--cCcccEEEEccccccC
Q 008489 150 --EMADV--VSDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 --e~~~~--l~~~~~vViDEaH~~~ 170 (564)
++... -.+++++|||.++.+.
T Consensus 159 ~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 159 WEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHHhcCCcEEEEecchhhc
Confidence 11111 1468999999999874
No 316
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.053 Score=57.31 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.6
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||.|+|||+.|.
T Consensus 39 ha~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAAR 56 (397)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 458899999999999973
No 317
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.30 E-value=0.058 Score=46.35 Aligned_cols=16 Identities=50% Similarity=0.744 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.++|.|++||||||.+
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999987
No 318
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.25 E-value=0.53 Score=42.01 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCC---eeEEEeccc--cccccccC---ccEEEecCccccCCc-------------c---------cc
Q 008489 277 TRTRQATRFNDASSE---FDVLVASDA--IGMGLNLN---ISRIIFSTMKKFDGV-------------E---------LR 326 (564)
Q Consensus 277 ~R~~~~~~F~~~~g~---~~VlVaT~~--~~~Gldip---v~~VI~~~~~k~~~~-------------~---------~~ 326 (564)
+..+.++.|++ .. -.||+++.- +..|||+| .+.||..+.+..... . ..
T Consensus 32 ~~~~~l~~f~~--~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 32 ETEELLEKYSA--ACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred hHHHHHHHHHH--hcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34678888987 22 258888887 99999995 678998887753221 0 11
Q ss_pred ccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 327 p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
+.....+.|-+||+=|... +.|.++.+..
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~--D~g~i~l~D~ 138 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKN--DYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHhCccccCcc--ceEEEEEEec
Confidence 2234668999999999886 4577777654
No 319
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.24 E-value=1.4 Score=48.90 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=59.0
Q ss_pred cCCceEEEEccCCccHHHHH---HHHHH--cCCCEEEEccHHHHHHHHHHHHHh----cCC--------eeEEEeCc-cc
Q 008489 75 KVRKVILHVGPTNSGKTHQA---LSRLE--SSSSGIYCGPLRLLAWEVAKRLNK----ANV--------SCDLITGQ-ER 136 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~---~~~l~--~~~~~li~~P~r~La~q~~~~l~~----~g~--------~~~~~~G~-~~ 136 (564)
.+.+-.++.+|=|.|||..+ +.++. .+.+++|++|...-+.++.+++.+ +|. .+....|+ +.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~ 264 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDEN 264 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeE
Confidence 45778899999999999994 22222 345788999999999998888663 221 11112221 11
Q ss_pred -cccC------C-CceEEEccee-ccccCcccEEEEccccccCCC
Q 008489 137 -EEVD------G-AKHRAVTVEM-ADVVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 137 -~~~~------~-~~~i~~T~e~-~~~l~~~~~vViDEaH~~~~~ 172 (564)
.... + +.+.+++... .-.-..++++|+|||+.+.+.
T Consensus 265 I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~ 309 (752)
T PHA03333 265 LEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPG 309 (752)
T ss_pred EEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHH
Confidence 1111 1 2333333211 111246799999999999754
No 320
>PRK10436 hypothetical protein; Provisional
Probab=93.24 E-value=0.09 Score=56.38 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.2
Q ss_pred chHHHhcCCceEEEEccCCccHHHHH
Q 008489 69 YPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 69 ~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
+..+....+..++++|||||||||..
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHH
Confidence 43343446778999999999999985
No 321
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.22 E-value=0.1 Score=57.36 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+..++.||.|+|||+.|.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3558999999999999973
No 322
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.12 E-value=0.086 Score=53.30 Aligned_cols=55 Identities=29% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHHcCCCEEEEccHHHHH
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLESSSSGIYCGPLRLLA 114 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~--~-~~l~~~~~~li~~P~r~La 114 (564)
+..+++-+. .+-.+ -..+.+++++|.|||||||.. + ..+-...++|.+.-+.+|-
T Consensus 155 ~gt~~~~~a~~L~~a-v~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 155 FGTMIRRAAKFLRRA-VGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred cCCcCHHHHHHHHHH-HhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 445555555 22222 134679999999999999984 2 2333456888888877764
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.10 E-value=0.17 Score=54.25 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=41.2
Q ss_pred ceEEEEccCCccHHHHHH---HHHHcC---CCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 78 KVILHVGPTNSGKTHQAL---SRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~---~~l~~~---~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
..+++.||+|+|||+.+- ..+.+. .+++|+.. ..+..++...+... .. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~~~~---------~~-------------~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG---------KL-------------NEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHhcc---------cH-------------HHH
Confidence 459999999999999952 334332 34566543 34444444433220 00 011
Q ss_pred cccc-CcccEEEEccccccCC
Q 008489 152 ADVV-SDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l-~~~~~vViDEaH~~~~ 171 (564)
.... .+.++++|||+|.+.+
T Consensus 188 ~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 188 REKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHhcCCEEEEechhhhcC
Confidence 1111 2578999999998754
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.10 E-value=0.16 Score=49.37 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=33.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANV 126 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~ 126 (564)
.+..+++.||+|+|||+.+.+.+. ++.+++|+. +-+-..+..+.++.+|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhCC
Confidence 477999999999999999766543 345677775 22333455555555554
No 325
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.07 E-value=0.021 Score=52.73 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=38.7
Q ss_pred EEEccCCccHHHHHHHH---HHcC--CCEEEEccHHHHHHHHHHHHHh----cCCeeEEE--eCc-cccccCCCceEEEc
Q 008489 81 LHVGPTNSGKTHQALSR---LESS--SSGIYCGPLRLLAWEVAKRLNK----ANVSCDLI--TGQ-EREEVDGAKHRAVT 148 (564)
Q Consensus 81 iv~apTGsGKT~~~~~~---l~~~--~~~li~~P~r~La~q~~~~l~~----~g~~~~~~--~G~-~~~~~~~~~~i~~T 148 (564)
++.|+-|-|||++.=.. +... .++++++|....+..+.+.+.. +|.+.... .+. .........+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 57899999999995322 2233 3688889999988888776542 23222000 000 00001134444555
Q ss_pred ceecc-ccCcccEEEEccccccC
Q 008489 149 VEMAD-VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 149 ~e~~~-~l~~~~~vViDEaH~~~ 170 (564)
|..+. .....|++|||||=.+.
T Consensus 81 Pd~l~~~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 81 PDELLAEKPQADLLIVDEAAAIP 103 (177)
T ss_dssp HHHHCCT----SCEEECTGGGS-
T ss_pred CHHHHhCcCCCCEEEEechhcCC
Confidence 53333 33467999999998875
No 326
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.07 E-value=0.49 Score=55.06 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
....++++.||+|+|||+.+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CCcCceEEECCCCCCHHHHH
Confidence 34568999999999999996
No 327
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.06 E-value=0.12 Score=47.69 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=35.3
Q ss_pred EEEEccCCccHHHHHHHHHHcC-CCEEEEccHHHHHHHHHHHHHh
Q 008489 80 ILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 80 viv~apTGsGKT~~~~~~l~~~-~~~li~~P~r~La~q~~~~l~~ 123 (564)
++|.|++|||||+.+.+.+... .+++|+.-.+..-.++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 6899999999999998887764 4788997666667777777664
No 328
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.05 E-value=0.16 Score=57.29 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=32.2
Q ss_pred CceEEEEccCCccHHHHHHHH---H-HcCC--CEEEE--ccHHHHHHHHHHHHH-hcCCeeE
Q 008489 77 RKVILHVGPTNSGKTHQALSR---L-ESSS--SGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~---l-~~~~--~~li~--~P~r~La~q~~~~l~-~~g~~~~ 129 (564)
++++.++||||+||||.+... + ...+ ++.++ =+.|.-+.++.+.+. .+|+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc
Confidence 678999999999999996221 2 2333 44333 345665555555444 4566553
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.04 E-value=0.094 Score=49.14 Aligned_cols=20 Identities=50% Similarity=0.519 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+.+++++|||||||||..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 23 EARKNILISGGTGSGKTTLL 42 (186)
T ss_pred hCCCEEEEECCCCCCHHHHH
Confidence 45899999999999999985
No 330
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.01 E-value=0.1 Score=59.65 Aligned_cols=61 Identities=20% Similarity=0.058 Sum_probs=44.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHcC-----CCEEEEccHHHHHHHHHHHHHhc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLESS-----SSGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~---~l~~~-----~~~li~~P~r~La~q~~~~l~~~ 124 (564)
..|++.|. ++.. ....++|.|..|||||++... .|++. .+++++..|+.+|.++.+|+.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA----PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 35666666 4432 245789999999999999643 33432 25789999999999999999853
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.12 Score=57.59 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
++.+++.||.|+|||+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457999999999999973
No 332
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.94 E-value=0.11 Score=58.76 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=37.4
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~-~----~~~li~~P~r~La~q~~~~l~~ 123 (564)
...++|.|..|||||++.. ..|++ . .+++++..|+.+|.++.+|+.+
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 4568899999999999963 33343 2 2579999999999999999974
No 333
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.93 E-value=0.11 Score=57.63 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+..++.||.|+|||+.|.
T Consensus 39 ha~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 458899999999999973
No 334
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=92.88 E-value=0.16 Score=58.21 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=56.9
Q ss_pred EEEccCCccHHHHHH-HHHHc--CCCE-EEEccHHHHHHHHHHHHH----hcCCeeEEEeCcc----ccccCCCceEEEc
Q 008489 81 LHVGPTNSGKTHQAL-SRLES--SSSG-IYCGPLRLLAWEVAKRLN----KANVSCDLITGQE----REEVDGAKHRAVT 148 (564)
Q Consensus 81 iv~apTGsGKT~~~~-~~l~~--~~~~-li~~P~r~La~q~~~~l~----~~g~~~~~~~G~~----~~~~~~~~~i~~T 148 (564)
|..+.||-|||+++. ...+. .|++ -++...--||.-=++.+. -+|+.|+++..+. ++....+.|+++|
T Consensus 155 IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItYgT 234 (1025)
T PRK12900 155 ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGT 234 (1025)
T ss_pred ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCCCcceecC
Confidence 789999999999963 22222 2333 233333345443333333 4699999886533 3334478899999
Q ss_pred cee--ccc-------------cCcccEEEEccccccCC
Q 008489 149 VEM--ADV-------------VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 149 ~e~--~~~-------------l~~~~~vViDEaH~~~~ 171 (564)
..- +|. ...+.+.||||++.++.
T Consensus 235 n~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLI 272 (1025)
T PRK12900 235 NNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLI 272 (1025)
T ss_pred CCccccccchhccccchhhhhccCCceEEEechhhhhh
Confidence 722 121 37799999999998753
No 335
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=0.1 Score=58.48 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.9
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+...++.++||||||++..
T Consensus 114 P~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 114 PTQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred hhcCCCEEEEEEChhhCCH
Confidence 4457899999999999874
No 336
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.076 Score=57.73 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 37 ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTA 53 (504)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44699999999999997
No 337
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.73 E-value=0.14 Score=50.80 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc---CC-CEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES---SS-SGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~---~~-~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
.+++++|.|++|||||+-+.+++.+ .| +++|+ -+.+...++.+.+..+|...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyv-s~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYV-STEESPEELLENARSFGWDL 77 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEE-EecCCHHHHHHHHHHcCCCH
Confidence 4899999999999999998887754 33 45555 44555666666666665443
No 338
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.69 E-value=0.28 Score=48.61 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=45.6
Q ss_pred HHHHHHhCCCCCeeEEEeccccccccccCcc-EEEecCccccCCccccccCHhhHHhhhccCCCCCCC
Q 008489 280 RQATRFNDASSEFDVLVASDAIGMGLNLNIS-RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 280 ~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~-~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
...+.|.+ |+.+|+|-|+++++|+.+-.+ .+-+.....+ =.-.-|+|...++|..||+.|.++.
T Consensus 52 ~e~~~F~~--g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~-i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIISDAGSTGISLHADRRVKNQRRRVH-ITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhC--CCceEEEEecccccccchhccccCCCCCceEE-EEeeCCCCHHHHHHHhccccccccc
Confidence 45568999 899999999999999999532 2222111000 0012377999999999999999984
No 339
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.65 E-value=0.13 Score=64.77 Aligned_cols=128 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcc
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~--~-~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~ 135 (564)
.++..|. ++..+....++..+|.|+.|+|||+.. + ..+.. +.+++.++|+.-.|..+.+.. |+....+..-.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~---g~~A~Ti~~~l 505 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI---PRLASTFITWV 505 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh---cchhhhHHHHH
Confidence 4677787 777776556799999999999999994 3 33333 346778899988877766543 22211110000
Q ss_pred ccccCCCceEEEcc----eeccccCcccEEEEccccccCCCCCcchHHHHHhcc--CccceEEEccCC
Q 008489 136 REEVDGAKHRAVTV----EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPA 197 (564)
Q Consensus 136 ~~~~~~~~~i~~T~----e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l--~~~~~~l~~~~~ 197 (564)
...... ...-|. .....+...+++||||+-+++.. .+..++-.. ....+.++|+..
T Consensus 506 ~~l~~~--~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~~garvVlvGD~~ 567 (1960)
T TIGR02760 506 KNLFND--DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQHNSKLILLNDSA 567 (1960)
T ss_pred Hhhccc--ccchhHHHhhcccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhhcCCEEEEEcChh
Confidence 000000 000010 01123467899999999998632 222222222 124456677654
No 340
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=92.60 E-value=0.13 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=20.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
.++.++|+||||||||-.++.....
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999988765444
No 341
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.56 E-value=0.28 Score=55.33 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=71.4
Q ss_pred CceEEEEccCCccHHHHHHHHH---Hc-----CCCEEEEccHHHHHHHHHHHHHhc--------CCeeEEEeCccc----
Q 008489 77 RKVILHVGPTNSGKTHQALSRL---ES-----SSSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQER---- 136 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l---~~-----~~~~li~~P~r~La~q~~~~l~~~--------g~~~~~~~G~~~---- 136 (564)
|--.|+.-=.|-|||++++.+| +- -.++||++|...+.+ ++..|.++ .+.|..+.....
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R 774 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEER 774 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHH-HHHHHHHhcccccccccceeehhhhccChHHH
Confidence 4445666667999999964433 22 247899999877654 44455532 233433322211
Q ss_pred c-----ccCCCceEEEcceecccc---------------------CcccEEEEccccccCCCCCcchHHHHHhcc-Cccc
Q 008489 137 E-----EVDGAKHRAVTVEMADVV---------------------SDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANE 189 (564)
Q Consensus 137 ~-----~~~~~~~i~~T~e~~~~l---------------------~~~~~vViDEaH~~~~~~rg~~~~~~ll~l-~~~~ 189 (564)
. ......+.++.++|+..| ...|+||.||+|.+... -.+.+.++..+ +++.
T Consensus 775 ~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkRR 852 (1567)
T KOG1015|consen 775 SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKRR 852 (1567)
T ss_pred HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhhee
Confidence 1 112456777777665322 67999999999999754 44455555443 3456
Q ss_pred eEEEccCCCch
Q 008489 190 LHLCGDPAAVP 200 (564)
Q Consensus 190 ~~l~~~~~~~~ 200 (564)
|.+.|.+--.+
T Consensus 853 I~LTGTPLQNN 863 (1567)
T KOG1015|consen 853 IILTGTPLQNN 863 (1567)
T ss_pred EEeecCchhhh
Confidence 66666654333
No 342
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.56 E-value=0.21 Score=55.31 Aligned_cols=57 Identities=16% Similarity=-0.131 Sum_probs=46.8
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
..+++++.||||||||..+ |..+.-.+.+||+=|--++....+...++.|.+|-++.
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 3568999999999999974 45454567889999999999999988888888887664
No 343
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.56 E-value=0.13 Score=55.87 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=15.8
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+....+.++||||||++..
T Consensus 113 P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred cccCCeEEEEEECcccCCH
Confidence 4457899999999999974
No 344
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.55 E-value=0.18 Score=54.82 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=39.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.||+|+|||+.+++.+.+ +.+++|+. .-+-..|+.+++..+|+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGID 316 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 4789999999999999998877753 34778874 445567888888877754
No 345
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.11 Score=56.36 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.7
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+...++.++||||+|+++.
T Consensus 115 P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cccCCeeEEEEEChhhcCH
Confidence 4457889999999999864
No 346
>PLN02165 adenylate isopentenyltransferase
Probab=92.47 E-value=0.13 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.0
Q ss_pred HhcCCceEEEEccCCccHHHHHHH
Q 008489 73 RKKVRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 73 ~~~~~~~viv~apTGsGKT~~~~~ 96 (564)
.+..++.++|.||||||||+.+..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHH
Confidence 445678999999999999998754
No 347
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.45 E-value=0.13 Score=58.16 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=44.3
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HHcC-----CCEEEEccHHHHHHHHHHHHHh
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LESS-----SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l~~~-----~~~li~~P~r~La~q~~~~l~~ 123 (564)
..+++-|. ++- ....+++|.|..|||||+++... |+.. .++++++.++.+|.++.+|+.+
T Consensus 195 ~~L~~~Q~~av~----~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVV----NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHh----CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 34666665 433 22456899999999999997443 3332 3689999999999999999985
No 348
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.45 E-value=0.15 Score=47.04 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=32.1
Q ss_pred ceEEEEccCCccHHHHHHHHHHcC-CCEEEEccHHHHHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~-~~~li~~P~r~La~q~~~~l~ 122 (564)
..++|.|++|||||+.+.....+. .+.+|+......-.++.+|+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHH
Confidence 368999999999999998776664 356777554444455666654
No 349
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.39 E-value=0.12 Score=59.00 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=44.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHc-C----CCEEEEccHHHHHHHHHHHHHhc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~---~l~~-~----~~~li~~P~r~La~q~~~~l~~~ 124 (564)
..|++-|. ++.. ....++|.|..|||||++... .|++ . .+++++.-|+.+|.++.+|+.++
T Consensus 8 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA----PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 45666666 4432 245789999999999999643 3333 2 36799999999999999999853
No 350
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.34 E-value=0.15 Score=56.97 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.7
Q ss_pred ccccCcccEEEEccccccCC
Q 008489 152 ADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~~ 171 (564)
.+....++++||||+|.++.
T Consensus 116 ~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred CcccCCcEEEEEECcccCCH
Confidence 35567899999999999974
No 351
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.32 E-value=0.096 Score=52.83 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCCCCCccccchHHHhcCCceEEEEccCCccHHHHH----HHHHHcC--CCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESS--SSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 59 ~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~----~~~l~~~--~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
+.-.++-|..|+.+- .++..++-.||-|+|||+.+ ..++..+ .++|..-| .-+.|.+.+.+-
T Consensus 126 I~~kt~~Q~~y~eai-~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP-----------aVEAGEklGfLP 193 (348)
T COG1702 126 IIPKTPGQNMYPEAI-EEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP-----------AVEAGEKLGFLP 193 (348)
T ss_pred eEecChhHHHHHHHH-HhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc-----------chhcCcccCcCC
Confidence 445566677887774 36778999999999999986 3333332 24455567 114477777777
Q ss_pred Cccc
Q 008489 133 GQER 136 (564)
Q Consensus 133 G~~~ 136 (564)
|+..
T Consensus 194 Gdl~ 197 (348)
T COG1702 194 GDLR 197 (348)
T ss_pred Cchh
Confidence 7654
No 352
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.29 E-value=0.44 Score=49.78 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=18.0
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.|+.++++||+|+|||+.+-
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 68999999999999999853
No 353
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.27 E-value=0.27 Score=54.19 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=42.2
Q ss_pred eEEEEccCCccHHHHH---HHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 79 VILHVGPTNSGKTHQA---LSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 79 ~viv~apTGsGKT~~~---~~~l~~---~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
.+++.|++|+|||+.+ ...+.+ +.+++| .+...+..+....+.. + . ..++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Y-itaeef~~el~~al~~-~--------~-------------~~~f~ 372 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRY-VSSEEFTNEFINSIRD-G--------K-------------GDSFR 372 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE-eeHHHHHHHHHHHHHh-c--------c-------------HHHHH
Confidence 4899999999999984 233332 234444 4455555555544432 1 0 00111
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
..+.+++++|||++|.+..
T Consensus 373 ~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 373 RRYREMDILLVDDIQFLED 391 (617)
T ss_pred HHhhcCCEEEEehhccccC
Confidence 2346689999999998864
No 354
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.052 Score=50.43 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P 109 (564)
.++..+++||.+||||+..++.+.. +.++++.-|
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp 40 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKP 40 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 3567899999999999987766543 234555555
No 355
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.24 E-value=0.094 Score=58.11 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||.|+|||+.+
T Consensus 46 ~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999997
No 356
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.17 E-value=0.22 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.|++|+|||+.+.+.+. ++.+++|+.- ..-..++.+++..+|..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 378899999999999999876653 3446677633 33466777777777644
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.16 E-value=0.23 Score=54.03 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc-----CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~-----~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..++|.||+|||||+.+++.+.+ +.+++|+.= -+-..++.+.++.+|..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 4789999999999999999888654 357788742 34556677777777654
No 358
>PRK04328 hypothetical protein; Provisional
Probab=92.10 E-value=0.19 Score=49.50 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=35.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.||+|+|||+.+.+.+.+ +.+++|+. +-+-..++.++++.+|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 4789999999999999998776643 34677773 333344566666666643
No 359
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.06 E-value=0.18 Score=56.28 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||.|+|||+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 3568999999999999973
No 360
>PF12846 AAA_10: AAA-like domain
Probab=92.02 E-value=0.19 Score=50.50 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=25.6
Q ss_pred CceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLA 114 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La 114 (564)
|.++++.|+||||||+.+... +..+..++++=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHH
Confidence 468999999999999996422 23344556665554433
No 361
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.00 E-value=0.26 Score=47.67 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
.+..+++.||+|+|||+.+.+.+ .++.+++|+.- -..+.++.++.+.+|+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCCC
Confidence 47899999999999999875543 33345666632 23345555665565543
No 362
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.00 E-value=0.38 Score=52.62 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcC----CCEEEEccHHHHHHHHHHHHHhc--CCeeEEEeCcccc---------
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESS----SSGIYCGPLRLLAWEVAKRLNKA--NVSCDLITGQERE--------- 137 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~----~~~li~~P~r~La~q~~~~l~~~--g~~~~~~~G~~~~--------- 137 (564)
+|-+-|+..+.|-|||.+. +..|.+. |.-+|+.|-..|-+ +++.+..+ .++|.-.-|....
T Consensus 585 qGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~N-WaqEisrFlP~~k~lpywGs~~eRkiLrKfw~ 663 (1185)
T KOG0388|consen 585 QGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHN-WAQEISRFLPSFKVLPYWGSPSERKILRKFWN 663 (1185)
T ss_pred ccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhH-HHHHHHHhCccceeecCcCChhhhHHHHHhcc
Confidence 5778899999999999996 4455554 34589999877643 44555544 3444444443211
Q ss_pred ----c-cCCCceEEEcce-ecc----cc--CcccEEEEccccccCCCCCcchHHHHHhccCcc-ceEEEcc
Q 008489 138 ----E-VDGAKHRAVTVE-MAD----VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGD 195 (564)
Q Consensus 138 ----~-~~~~~~i~~T~e-~~~----~l--~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~-~~~l~~~ 195 (564)
+ ....-++++|.. +.- .+ -++.+.|+||||.+..+ ....|..+| .+.++ .+.+.|.
T Consensus 664 rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSS-sS~RWKtLL-sF~cRNRLLLTGT 732 (1185)
T KOG0388|consen 664 RKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSS-SSSRWKTLL-SFKCRNRLLLTGT 732 (1185)
T ss_pred hhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhh-hhhHHHHHh-hhhccceeeecCC
Confidence 0 123445666653 331 12 56889999999999542 244455443 44433 3444444
No 363
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.98 E-value=0.6 Score=52.44 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=65.4
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH---HHHHHcC---CCEEEEccHHHHHHHHHHHHH----hcCCeeEEEe---Cc
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESS---SSGIYCGPLRLLAWEVAKRLN----KANVSCDLIT---GQ 134 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~~~---~~~li~~P~r~La~q~~~~l~----~~g~~~~~~~---G~ 134 (564)
.+..+.....+.+++.|.=|=|||.++ +..+... .+++|+.|+.+.+..+.+.+. .+|.+-.+.. |.
T Consensus 222 ~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~ 301 (758)
T COG1444 222 ILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE 301 (758)
T ss_pred HHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc
Confidence 455555556669999999999999995 3333222 377888999999888876654 3454432211 22
Q ss_pred ccccc-CCCceEEEcceeccccCcccEEEEccccccC
Q 008489 135 EREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 135 ~~~~~-~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~ 170 (564)
..... +...+-+..|.... .. -|++|||||=.+.
T Consensus 302 ~~~~~~~~~~i~y~~P~~a~-~~-~DllvVDEAAaIp 336 (758)
T COG1444 302 IREVSGDGFRIEYVPPDDAQ-EE-ADLLVVDEAAAIP 336 (758)
T ss_pred eeeecCCceeEEeeCcchhc-cc-CCEEEEehhhcCC
Confidence 11111 23335567776665 33 8999999998876
No 364
>PRK14530 adenylate kinase; Provisional
Probab=91.97 E-value=0.11 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
.++.+++.||+||||||++-.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~ 22 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSN 22 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 466799999999999999743
No 365
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.93 E-value=0.11 Score=44.98 Aligned_cols=15 Identities=47% Similarity=0.348 Sum_probs=13.9
Q ss_pred EEEEccCCccHHHHH
Q 008489 80 ILHVGPTNSGKTHQA 94 (564)
Q Consensus 80 viv~apTGsGKT~~~ 94 (564)
|+|.|++||||||.+
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 689999999999997
No 366
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.92 E-value=0.41 Score=50.34 Aligned_cols=53 Identities=32% Similarity=0.332 Sum_probs=35.6
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCC-CEEEE--ccHHHHHHHHHHHHH-hcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ESSS-SGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~~~-~~li~--~P~r~La~q~~~~l~-~~g~~~ 128 (564)
.+..++++||||+||||.+.+.. ...+ ++.++ =+.|..+.++.++.. ..|+++
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~ 282 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF 282 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe
Confidence 35679999999999999974332 2333 45443 677888877777665 446544
No 367
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.91 E-value=0.22 Score=48.43 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=35.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
.+..+++.|++|+|||+.+.+.+. ++.+++|+.= ..-..++.+++..+|+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCCCCh
Confidence 378899999999999999876654 3456666622 233356666667766543
No 368
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.86 E-value=0.12 Score=52.63 Aligned_cols=19 Identities=47% Similarity=0.468 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+.+++++|||||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 369
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.82 E-value=0.19 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=18.9
Q ss_pred eEEEEccCCccHHHHHHHHHHcCC
Q 008489 79 VILHVGPTNSGKTHQALSRLESSS 102 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~~~ 102 (564)
.++++||+||||||.+-......+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 479999999999999866554444
No 370
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.81 E-value=0.16 Score=55.94 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+..++.||.|+|||+.+-
T Consensus 39 hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999999973
No 371
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.79 E-value=0.17 Score=56.02 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=20.1
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
.+..+....+..++++|||||||||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 333333345678999999999999985
No 372
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.77 E-value=0.13 Score=48.69 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.++++|||||||||..
T Consensus 3 lilI~GptGSGKTTll 18 (198)
T cd01131 3 LVLVTGPTGSGKSTTL 18 (198)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999995
No 373
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.75 E-value=0.55 Score=47.86 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=15.3
Q ss_pred eEEEEccCCccHHHHHH
Q 008489 79 VILHVGPTNSGKTHQAL 95 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~ 95 (564)
-+++.||.|+|||+.+.
T Consensus 26 alL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 26 ALLFYGPPGVGKTTAAL 42 (325)
T ss_pred eeeeeCCCCCCHHHHHH
Confidence 39999999999999974
No 374
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.68 E-value=0.046 Score=58.81 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.3
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
+.-.+|++.||||+||++-
T Consensus 115 P~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred CccccceEEEEecHHhhhH
Confidence 3458999999999999983
No 375
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.68 E-value=0.17 Score=51.72 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+++++++|+||||||+.+
T Consensus 147 ~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 5889999999999999885
No 376
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=0.22 Score=52.42 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||.|+|||+.+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~ 54 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAAR 54 (394)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4568999999999999974
No 377
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.58 E-value=0.25 Score=55.38 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=46.1
Q ss_pred HhcCCceEEEEccCCccHHHHH-HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 73 RKKVRKVILHVGPTNSGKTHQA-LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 73 ~~~~~~~viv~apTGsGKT~~~-~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
+....++++++||||||||..+ +..|+. .+.+||+=|--++....+...++.|..|-++.
T Consensus 135 r~~~~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 135 TNGEQPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred ccCCCceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 3344679999999999999984 333444 57889999999999888887777887776543
No 378
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.40 E-value=0.16 Score=55.02 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~ 95 (564)
..+..++++|||||||||..-
T Consensus 240 ~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 345679999999999999953
No 379
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.38 E-value=0.13 Score=53.29 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..++++|||||||||..
T Consensus 133 ~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL 151 (358)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 5789999999999999985
No 380
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.36 E-value=0.24 Score=51.37 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+..++.||+|+|||+.+
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999996
No 381
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.26 E-value=0.28 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.++.+.+.||+|||||+.+++.+. .+.+++|+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi 46 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYI 46 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999876653 23467776
No 382
>PRK08233 hypothetical protein; Provisional
Probab=91.23 E-value=0.15 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
+...+.+.|++||||||.+-.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~ 22 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTER 22 (182)
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 356788999999999999743
No 383
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.22 E-value=0.15 Score=54.25 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=31.1
Q ss_pred cCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWE 116 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q 116 (564)
...+++++.|+||||||+.+...+ ..+.+++++=|..++...
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 457899999999999999863333 235678888888765543
No 384
>PRK13764 ATPase; Provisional
Probab=91.12 E-value=0.26 Score=54.41 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEE
Q 008489 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGI 105 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~---~~~l~~~~~~l 105 (564)
.+++++++|||||||||.+ ...+...++.+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 4778999999999999985 23334445544
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.11 E-value=0.53 Score=46.95 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=46.9
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcC-CCEEEE--ccHHHHHHHHHHHH-HhcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLESS-SSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~~-~~~li~--~P~r~La~q~~~~l-~~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
+.+.++++||+|+||||.+. ..+.+. .+++++ =+.|..+.+..+.+ +..|+++. ...... +...+ .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~---dp~~~--~ 143 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGA---DPAAV--A 143 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCC---CHHHH--H
Confidence 35788899999999999852 233344 455544 35666665554444 45564432 211110 00000 0
Q ss_pred ceec--cccCcccEEEEccccccC
Q 008489 149 VEMA--DVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 149 ~e~~--~~l~~~~~vViDEaH~~~ 170 (564)
.+.+ ....++++||||=+-...
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCc
Confidence 0001 123678999999876543
No 386
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.11 E-value=0.15 Score=47.18 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
|+.+++.||+|||||+.+-
T Consensus 1 g~ii~l~G~~GsGKsTl~~ 19 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVK 19 (180)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5679999999999999863
No 387
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=91.07 E-value=0.82 Score=45.71 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=62.0
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcC-CCEEEEccHHHHHHHHHHHHHhcCCe---eEEEeCcc--ccccCCCceE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ESS-SSGIYCGPLRLLAWEVAKRLNKANVS---CDLITGQE--REEVDGAKHR 145 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~~-~~~li~~P~r~La~q~~~~l~~~g~~---~~~~~G~~--~~~~~~~~~i 145 (564)
.+.-.++--.||.||--++...+ +++ .+.|++...-.|-....+.++..|.. +..+..-. ........++
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCcc
Confidence 36667888899999999854333 333 46899999999999999999976533 22221110 0011244578
Q ss_pred EEcceec------------------ccc--CcccEEEEccccccCCC
Q 008489 146 AVTVEMA------------------DVV--SDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 146 ~~T~e~~------------------~~l--~~~~~vViDEaH~~~~~ 172 (564)
++|+-.+ +|+ ..-.+||+||+|.....
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 8886221 122 23459999999998654
No 388
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.07 E-value=1.2 Score=52.11 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
...+.+++||+|+|||+.+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4578999999999999996
No 389
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.96 E-value=0.25 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
++.-++++|+|||||||.....+
T Consensus 126 kRGLviiVGaTGSGKSTtmAaMi 148 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMAAMI 148 (375)
T ss_pred cCceEEEECCCCCCchhhHHHHh
Confidence 57789999999999999854333
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=90.95 E-value=0.23 Score=46.99 Aligned_cols=21 Identities=52% Similarity=0.675 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
+..++.||||+|||..++..-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA 22 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALA 22 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHH
Confidence 467999999999998876533
No 391
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=90.94 E-value=0.25 Score=50.07 Aligned_cols=21 Identities=57% Similarity=0.705 Sum_probs=17.9
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~ 97 (564)
.+.++++||||||||+.+...
T Consensus 4 ~~~i~i~GptgsGKt~la~~l 24 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIEL 24 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHH
Confidence 568999999999999988643
No 392
>PRK08118 topology modulation protein; Reviewed
Probab=90.92 E-value=0.16 Score=46.73 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.++|+||+||||||.+
T Consensus 2 ~rI~I~G~~GsGKSTla 18 (167)
T PRK08118 2 KKIILIGSGGSGKSTLA 18 (167)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999986
No 393
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.92 E-value=0.29 Score=56.01 Aligned_cols=16 Identities=50% Similarity=0.698 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||||+|||+.+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5899999999999986
No 394
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.89 E-value=0.4 Score=53.66 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=45.1
Q ss_pred CCceEEEEccCCccHHHHH-HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 76 VRKVILHVGPTNSGKTHQA-LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~-~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
...++++.||||||||+.+ +..++. .+.++++=|-.++...++...++.|.+|-++.
T Consensus 223 g~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfd 281 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLD 281 (641)
T ss_pred CCceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578999999999999983 344444 56778888999999888887778888877664
No 395
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.85 E-value=0.84 Score=53.04 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
...+++++||.|+|||+.+
T Consensus 207 ~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CcCceeEECCCCCCHHHHH
Confidence 4568999999999999996
No 396
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.23 Score=51.54 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=21.1
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHHcCC
Q 008489 75 KVRKVILHVGPTNSGKTHQA--LSRLESSS 102 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~--~~~l~~~~ 102 (564)
+..-|+++.||||||||+.+ +..+++-+
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCC
Confidence 34668999999999999986 44454443
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=90.79 E-value=0.58 Score=49.74 Aligned_cols=53 Identities=28% Similarity=0.250 Sum_probs=34.3
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc--CCCEEEE--ccHHHHHHHHHHHHH-hcCCeeE
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLES--SSSGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~--~~~~li~--~P~r~La~q~~~~l~-~~g~~~~ 129 (564)
...++++|++|+||||.+. .++.+ +.+++++ =+.|..|.+..+.+. ..|+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 4678999999999999863 22333 3455544 567777765555544 4566543
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.75 E-value=0.17 Score=47.10 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.4
Q ss_pred eEEEEccCCccHHHHHH
Q 008489 79 VILHVGPTNSGKTHQAL 95 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~ 95 (564)
.+++.||+||||||+|-
T Consensus 2 riiilG~pGaGK~T~A~ 18 (178)
T COG0563 2 RILILGPPGAGKSTLAK 18 (178)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999973
No 399
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=90.72 E-value=0.29 Score=55.56 Aligned_cols=47 Identities=21% Similarity=0.119 Sum_probs=37.1
Q ss_pred CceEEEEccCCccHHHHHHHH---HHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 008489 77 RKVILHVGPTNSGKTHQALSR---LES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~---l~~-~----~~~li~~P~r~La~q~~~~l~~ 123 (564)
...++|.|..|||||+..... +++ . .+++++..|+.+|.++.+|+.+
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 567999999999999996433 332 2 3568888999999999999974
No 400
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.35 Score=53.33 Aligned_cols=89 Identities=27% Similarity=0.374 Sum_probs=51.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccC--CCceEEEc--c-
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVD--GAKHRAVT--V- 149 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~--~~~~i~~T--~- 149 (564)
+++..++++||+|.|||. |+.++|+.+.+.-+++ ..|+.+...+ +.+-.+.. |
T Consensus 348 ~kGpILcLVGPPGVGKTS--------------------LgkSIA~al~RkfvR~--sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 348 LKGPILCLVGPPGVGKTS--------------------LGKSIAKALGRKFVRI--SLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred CCCcEEEEECCCCCCchh--------------------HHHHHHHHhCCCEEEE--ecCccccHHHhccccccccccCCh
Confidence 468899999999999985 4566666665322222 2254433221 22221111 2
Q ss_pred eecccc----CcccEEEEccccccCCCCCcchHHHHHhccC
Q 008489 150 EMADVV----SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186 (564)
Q Consensus 150 e~~~~l----~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~ 186 (564)
.+...+ ..--++++||+|-++.+.||.-- .+||..+
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-SALLEVL 445 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-SALLEVL 445 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccCCCCCChH-HHHHhhc
Confidence 222222 34558999999999888888663 3444433
No 401
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=0.092 Score=54.93 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||+|+|||+.+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578999999999999874
No 402
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=90.64 E-value=0.42 Score=49.95 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=51.7
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHHcC-CC-EEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 75 KVRKVILHVGPTNSGKTHQA--LSRLESS-SS-GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~--~~~l~~~-~~-~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
-.+..|++.|+||+||++.| ++.+... .. ..|.+.--+++.....-- =+|..-+..+|-.... ...
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-LFG~~kGaftGa~~~k---~Gl------ 168 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-LFGHEKGAFTGAQGGK---AGL------ 168 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH-HhccccceeecccCCc---Cch------
Confidence 35889999999999999997 4444333 22 344455555544433211 3577777777733221 000
Q ss_pred eccccCcccEEEEccccccCCC
Q 008489 151 MADVVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 151 ~~~~l~~~~~vViDEaH~~~~~ 172 (564)
+ -..+=+.+.+||+|.+.-.
T Consensus 169 -f-e~A~GGtLfLDEI~~LP~~ 188 (403)
T COG1221 169 -F-EQANGGTLFLDEIHRLPPE 188 (403)
T ss_pred -h-eecCCCEEehhhhhhCCHh
Confidence 0 0133468999999998643
No 403
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.50 E-value=0.35 Score=46.37 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+.+.|++|||||+.+++.+. ++++++|+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 478899999999999999876653 34567777
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.48 E-value=0.74 Score=44.01 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
--++++.||+|+||||..
T Consensus 137 ~lntLiigpP~~GKTTlL 154 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred ceeeEEecCCCCChHHHH
Confidence 346999999999999985
No 405
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.48 E-value=0.64 Score=45.28 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEE---ccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC---GPLRLLAWE 116 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~---~P~r~La~q 116 (564)
.+..++|.|+||+|||+.+.+.+. + +.+++|+ .|...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 478999999999999999765443 3 4567777 454444443
No 406
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=90.46 E-value=0.36 Score=48.57 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEE---ccHHHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYC---GPLRLLAWEVAKRLN 122 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~---~P~r~La~q~~~~l~ 122 (564)
.|.-+++.|||||||||-. +-...++-+.+++ .|..-||..+....+
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHc
Confidence 4678999999999999984 3333444455655 677777776665554
No 407
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.45 E-value=0.26 Score=50.98 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++|||||||||..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH
Confidence 35688999999999999995
No 408
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=1.8 Score=46.08 Aligned_cols=109 Identities=10% Similarity=0.139 Sum_probs=70.5
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccc--cccccc-CccEEEecC
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRIIFST 316 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~--~~Gldi-pv~~VI~~~ 316 (564)
.++|+. |.-+-..+..++.+... ....+|--.+...-...-..|-. |...||+-|-=+ =+--+| .|+.||+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i-~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEI-SFVMINEYSSKSKVSRARELFFQ--GRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhc-chHHHhhhhhHhhhhHHHHHHHh--cCceEEEEehhhhhhhhheecceeeEEEec
Confidence 455555 77777777788876553 33334333333333345566877 888999999743 345678 599999999
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCC-CCcEEEEEecCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~-~~~G~~~~l~~~ 358 (564)
++.+ |.=.++++.+.||+.-.|.. .+.-.|.++|++
T Consensus 631 pP~~------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 631 PPNN------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred CCCC------cHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 8653 44578889999888655532 233556667664
No 409
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.40 E-value=0.2 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.++.++++||+|||||+.+-
T Consensus 4 ~g~~i~i~G~sGsGKstl~~ 23 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVK 23 (205)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 58899999999999999863
No 410
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.38 E-value=0.19 Score=44.37 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
+|++.||+|+|||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999986
No 411
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.36 E-value=0.53 Score=47.96 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=48.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.+..+.+.||+|||||+.+++.+. .+++++|+-.-..+..+ .++.+|+... .++++.|..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~~-------------~l~v~~p~~ 117 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDID-------------NLLVSQPDT 117 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCHH-------------HeEEecCCC
Confidence 368999999999999999876654 35678888444433333 3444555421 222222211
Q ss_pred -------cc---ccCcccEEEEccccccC
Q 008489 152 -------AD---VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 152 -------~~---~l~~~~~vViDEaH~~~ 170 (564)
.. .-..+++||||=+-.+.
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 11 12568999999987653
No 412
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.36 E-value=0.26 Score=52.98 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+..++.||.|+|||+.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 558899999999999973
No 413
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.32 E-value=0.27 Score=49.07 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.9
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
..++.++++||||+|||..+-..+.+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HcCCcEEEECCCCCchhHHHHhhhcc
Confidence 36899999999999999998666644
No 414
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.31 E-value=0.31 Score=46.45 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.+.||+||||||.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4778999999999999986
No 415
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=90.26 E-value=0.82 Score=48.30 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred ceEEEEccCCccHHHHHHHHH----H---cCCCEEEEccHHH-HHHHHHHHHH----hcCCeeEEEeCcc---ccccC-C
Q 008489 78 KVILHVGPTNSGKTHQALSRL----E---SSSSGIYCGPLRL-LAWEVAKRLN----KANVSCDLITGQE---REEVD-G 141 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l----~---~~~~~li~~P~r~-La~q~~~~l~----~~g~~~~~~~G~~---~~~~~-~ 141 (564)
+..++.|..|||||..+...+ + ...+.+++-|+.- +...++..+. .+|+....-.... ..... +
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 457899999999999963222 2 3446677877766 6666666655 4465422221111 11112 3
Q ss_pred CceEEEcc-e---eccccCcccEEEEccccccCC
Q 008489 142 AKHRAVTV-E---MADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 142 ~~~i~~T~-e---~~~~l~~~~~vViDEaH~~~~ 171 (564)
..+++.+- + .+.....++.+.+|||.++..
T Consensus 82 ~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~ 115 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTF 115 (396)
T ss_pred eEEEeecccCChhHhhCcceeeeehhhhhhhcCH
Confidence 44555444 2 122234579999999999864
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.24 E-value=0.35 Score=45.66 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=13.8
Q ss_pred EEEEccCCccHHHHH
Q 008489 80 ILHVGPTNSGKTHQA 94 (564)
Q Consensus 80 viv~apTGsGKT~~~ 94 (564)
+.+.||+||||||.+
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 679999999999996
No 417
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.22 E-value=0.22 Score=46.11 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
++.++++|++||||||.+-
T Consensus 2 ~~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999973
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.19 E-value=0.4 Score=45.71 Aligned_cols=19 Identities=37% Similarity=0.316 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+.|.|++||||||.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4568999999999999986
No 419
>PRK07261 topology modulation protein; Provisional
Probab=90.19 E-value=0.2 Score=46.24 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.++|+|++||||||.+-.
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999999843
No 420
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.17 E-value=0.32 Score=55.71 Aligned_cols=61 Identities=20% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HHc-C----CCEEEEccHHHHHHHHHHHHHhc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l~~-~----~~~li~~P~r~La~q~~~~l~~~ 124 (564)
..|++.|. ++.. ....++|.|..|||||++.... +++ . .+++++.-|+.+|.++.+|+.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT----TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC----CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 34666665 4432 2467999999999999996433 333 2 25788899999999999999743
No 421
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.08 E-value=0.7 Score=47.01 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=51.8
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCC----EEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecc
Q 008489 78 KVILHVGPTNSGKTHQALSRLESSSS----GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~~~----~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~ 153 (564)
..+|+.||+|+|||+.|-......++ -|=+.-|.+-..++...+.+..- -..
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~------------------------~~~ 218 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN------------------------EKS 218 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH------------------------HHh
Confidence 56899999999999998444333322 23334444444444443332100 001
Q ss_pred ccCcccEEEEccccccCCCCCcchHHHHHhc-cCccceEEEccCCCch
Q 008489 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLG-ICANELHLCGDPAAVP 200 (564)
Q Consensus 154 ~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~-l~~~~~~l~~~~~~~~ 200 (564)
+..+-.++.|||+|.+.-. ..+.++- +-...+.++|.++..+
T Consensus 219 l~krkTilFiDEiHRFNks-----QQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKS-----QQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhcceeEEEeHHhhhhhhh-----hhhcccceeccCceEEEecccCCC
Confidence 1233458899999998532 1344433 3345677777765443
No 422
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.08 E-value=0.57 Score=49.56 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCceEEEEccCCccHHHHHHH----HHHcC--CC-EEEE-ccHHHHHHHHHHHHHh-cCCeeEEEeCccccccCCCceEE
Q 008489 76 VRKVILHVGPTNSGKTHQALS----RLESS--SS-GIYC-GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRA 146 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~----~l~~~--~~-~li~-~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~~~~~i~ 146 (564)
+++.+.++||||+||||.+.. .+... .+ +++. -..|.-+.++...+.+ +|+++.........
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl--------- 260 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL--------- 260 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH---------
Confidence 478899999999999999632 22222 23 3444 4446666665555553 46655432111000
Q ss_pred EcceeccccCcccEEEEccc
Q 008489 147 VTVEMADVVSDYDCAVIDEI 166 (564)
Q Consensus 147 ~T~e~~~~l~~~~~vViDEa 166 (564)
...+..+..+++++||.+
T Consensus 261 --~~al~~l~~~d~VLIDTa 278 (420)
T PRK14721 261 --QLMLHELRGKHMVLIDTV 278 (420)
T ss_pred --HHHHHHhcCCCEEEecCC
Confidence 012234678899999986
No 423
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.02 E-value=0.56 Score=47.82 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.2
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
++.+.+.||+|||||+.+++.+. .+++++|+-+--.+-.+ +++.+|+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd 106 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVD 106 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCC
Confidence 78999999999999999877664 35688998654444433 34455543
No 424
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.44 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.6
Q ss_pred CceEEEEccCCccHHHHHHHHHHcC
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESS 101 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~ 101 (564)
..-++++||+|||||+.|-....+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa 569 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA 569 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc
Confidence 3458999999999999874433333
No 425
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.93 E-value=0.21 Score=51.98 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..++++|||||||||..
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567999999999999985
No 426
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.83 E-value=0.65 Score=42.70 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=43.2
Q ss_pred eEEEEccCCccHHHHHHH---HHHcC-CCEEEE--ccHHHHHHHHHHH-HHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 79 VILHVGPTNSGKTHQALS---RLESS-SSGIYC--GPLRLLAWEVAKR-LNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~---~l~~~-~~~li~--~P~r~La~q~~~~-l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.+++.|++|+|||+.+.. .+.+. .+++++ -++|.-..+...+ ..+.|+++.. ..... +...+ ....+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~~~~~---~~~~~-~~~~~ 75 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--EGEGK---DPVSI-AKRAI 75 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--cCCCC---CHHHH-HHHHH
Confidence 478999999999999633 23333 456555 3555433333333 2344544322 11110 00000 00000
Q ss_pred c-cccCcccEEEEccccccC
Q 008489 152 A-DVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 152 ~-~~l~~~~~vViDEaH~~~ 170 (564)
. ....+++++|+|......
T Consensus 76 ~~~~~~~~d~viiDt~g~~~ 95 (173)
T cd03115 76 EHAREENFDVVIVDTAGRLQ 95 (173)
T ss_pred HHHHhCCCCEEEEECcccch
Confidence 1 123578999999988753
No 427
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.79 E-value=0.22 Score=43.08 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=14.3
Q ss_pred EEEEccCCccHHHHHH
Q 008489 80 ILHVGPTNSGKTHQAL 95 (564)
Q Consensus 80 viv~apTGsGKT~~~~ 95 (564)
+++.||+|+|||+.+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999999873
No 428
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.77 E-value=1.2 Score=37.46 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.4
Q ss_pred EEEEccCCccHHHHH
Q 008489 80 ILHVGPTNSGKTHQA 94 (564)
Q Consensus 80 viv~apTGsGKT~~~ 94 (564)
|.+.||+|+|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 468999999999987
No 429
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.77 E-value=0.45 Score=45.88 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+.+.||+|+|||+.+.+.+. .+.+++|+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi 57 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYI 57 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999866553 34567776
No 430
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.76 E-value=0.62 Score=51.87 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=44.0
Q ss_pred CceEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcC-CeeEEEe
Q 008489 77 RKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKAN-VSCDLIT 132 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~--~~~l~~~~~~li~~P~r~La~q~~~~l~~~g-~~~~~~~ 132 (564)
..++++.||||||||+.+ |..|.-.+.++++=|-.+++..++..-++.| .+|-++.
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLD 269 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEe
Confidence 579999999999999973 5444446788888999999988887777776 6676654
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.76 E-value=0.24 Score=46.39 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..++++||+||||||.+
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568999999999999986
No 432
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.71 E-value=1.2 Score=51.20 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
...++++.||+|+|||+.+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 4668999999999999996
No 433
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.60 E-value=0.82 Score=48.59 Aligned_cols=53 Identities=30% Similarity=0.233 Sum_probs=33.9
Q ss_pred CceEEEEccCCccHHHHHH---HHHH-c-CCCEEEE--ccHHHHHHHHHHHHH-hcCCeeE
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLE-S-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~-~-~~~~li~--~P~r~La~q~~~~l~-~~g~~~~ 129 (564)
...++++|++|+||||.+. .++. + +.+++++ =++|..|.++.+++. ..|+++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE
Confidence 4689999999999999963 2233 2 3455444 456666666555554 4565543
No 434
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.59 E-value=0.25 Score=45.80 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+++.||+|||||+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLL 18 (179)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999997
No 435
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.57 E-value=0.63 Score=52.34 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=42.3
Q ss_pred eEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc-CCe-eEEE
Q 008489 79 VILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA-NVS-CDLI 131 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~-g~~-~~~~ 131 (564)
..++.|-||||||+.+...+.+ +...||++|...+|.|++..++.+ +-. |.+.
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f 86 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYF 86 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5569999999999998776665 356799999999999999999875 333 4444
No 436
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.52 E-value=1.2 Score=41.51 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+..++.||+|+|||+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLA 31 (188)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999996
No 437
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.50 E-value=0.8 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
.+|+..+|.||.|+|||+.+
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 36899999999999999875
No 438
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.49 E-value=0.86 Score=47.23 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||+|+|||+.+.
T Consensus 46 ha~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 46 HALLFEGPEGIGKATLAF 63 (351)
T ss_pred eeEeeECCCCCCHHHHHH
Confidence 358999999999999963
No 439
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.42 E-value=0.27 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
+++.++++|++|||||+.+-
T Consensus 3 ~~~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 46789999999999999973
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.35 E-value=0.25 Score=46.74 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccC-ccEEEecCc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~ 317 (564)
+++=-.+++.|.-... +..+ .|.|+|+-..++++..++ .+|-.-|+|+- |+|+--. .++|||.+.
T Consensus 141 QqQRVAIARALaM~P~--vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTH---EM~FAr~VadrviFmd~ 211 (240)
T COG1126 141 QQQRVAIARALAMDPK--VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH---EMGFAREVADRVIFMDQ 211 (240)
T ss_pred HHHHHHHHHHHcCCCC--EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEec---hhHHHHHhhheEEEeeC
Confidence 4555566777754433 4443 478888877777666654 33544444443 4565555 778887765
No 441
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=89.31 E-value=0.86 Score=44.93 Aligned_cols=90 Identities=19% Similarity=0.023 Sum_probs=45.2
Q ss_pred eEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceeccc
Q 008489 79 VILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~ 154 (564)
.-++.|+.||+||.-|++- ..+.|+.||.-=+-.--+.+++++...--.+.++.-+ . ......-.--.-..+
T Consensus 3 I~ihhG~pGSyKTsgAv~~~~iPA~ksGR~IITNVrGl~ler~~~~~pd~~~~i~I~n~D-~---~~~d~~~~m~~~~~w 78 (398)
T COG4128 3 ISIHHGIPGSYKTSGAVCNVIIPAFKSGRRIITNVRGLQLERITERYPDATGEIIIVNDD-V---LKADFFPFMGGEGSW 78 (398)
T ss_pred eEEEecCCCCcccchhHHhhhhhhhcCCcEEEEecccccHHHHHHhccCCCCceEEEecc-c---cCcccchhhcceeec
Confidence 3588999999999997532 3456777666333222233344443221111111000 0 000000000012234
Q ss_pred cCcccEEEEccccccCCC
Q 008489 155 VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 155 l~~~~~vViDEaH~~~~~ 172 (564)
-+.=.++||||+..+--.
T Consensus 79 a~~gafl~iDE~~rifpk 96 (398)
T COG4128 79 AQFGAFLVIDEAWRIFPK 96 (398)
T ss_pred cccCcEEEEechhhccCc
Confidence 467789999999998643
No 442
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.28 E-value=0.75 Score=42.99 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH---c-----------CCCEEEEccHHHHHHHHHHHHHh
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE---S-----------SSSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~---~-----------~~~~li~~P~r~La~q~~~~l~~ 123 (564)
.+..+++.||+|+|||+.+++... . .++++|+..--. ..++.+++..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 588999999999999999754332 2 346677733222 4455566653
No 443
>PRK14531 adenylate kinase; Provisional
Probab=89.28 E-value=0.27 Score=45.91 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+.+++.||+||||||++-.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~ 21 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAAR 21 (183)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999999743
No 444
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.22 E-value=1.2 Score=47.24 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=34.4
Q ss_pred CceEEEEccCCccHHHHHH---HHHHcCC-CEEEE--ccHHHHHHHHHHHHHh-cCCeeE
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLESSS-SGIYC--GPLRLLAWEVAKRLNK-ANVSCD 129 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~~~-~~li~--~P~r~La~q~~~~l~~-~g~~~~ 129 (564)
...++++|++|+||||.+. .++.+.+ +++++ =|.|..|.++.+.+.+ .++++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 4689999999999999862 2333333 55444 4667777776665553 455543
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.18 E-value=0.56 Score=39.55 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=18.6
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~ 97 (564)
.++.+.+.||+|||||+.+...
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHh
Confidence 4688999999999999987543
No 446
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.17 E-value=0.32 Score=47.76 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcC
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLESS 101 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~~~ 101 (564)
+|+.+.+.||.||||||.. +..++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999984 5555553
No 447
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.14 E-value=1.4 Score=48.05 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=55.7
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecccccccccc-CccEEEecCc
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTM 317 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi-pv~~VI~~~~ 317 (564)
.++|.. +..-+.++.+.+++.....+.++||+++..+|.++.....+ |+.+|+|+|..+-. ..+ ++..||....
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 444444 78888888888877544479999999999999988888887 88899999985432 344 3777875543
No 448
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.06 E-value=0.48 Score=48.29 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~ 107 (564)
.+..+.+.||+|||||+.+++.... +++++|+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi 135 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI 135 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE
Confidence 3788999999999999998877643 2467887
No 449
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.14 Score=52.59 Aligned_cols=69 Identities=26% Similarity=0.299 Sum_probs=42.8
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecccc--
Q 008489 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV-- 155 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~l-- 155 (564)
+|++..||+|+|||..+ |+|| .+.|+...+.||+.+.... ..-+..--+++||-
T Consensus 385 RNilfyGPPGTGKTm~A----------------relA-------r~SGlDYA~mTGGDVAPlG-~qaVTkiH~lFDWakk 440 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA----------------RELA-------RHSGLDYAIMTGGDVAPLG-AQAVTKIHKLFDWAKK 440 (630)
T ss_pred hheeeeCCCCCCchHHH----------------HHHH-------hhcCCceehhcCCCccccc-hHHHHHHHHHHHHHhh
Confidence 68999999999999877 2332 1347777778887664321 11111111455553
Q ss_pred -CcccEEEEccccccC
Q 008489 156 -SDYDCAVIDEIQMLG 170 (564)
Q Consensus 156 -~~~~~vViDEaH~~~ 170 (564)
.+-=++.|||++-+.
T Consensus 441 S~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 441 SRRGLLLFIDEADAFL 456 (630)
T ss_pred cccceEEEehhhHHHH
Confidence 333478899999764
No 450
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=88.96 E-value=0.56 Score=44.00 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.|+.||||||++
T Consensus 2 ~g~~IvieG~~GsGKsT~~ 20 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQA 20 (195)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4788999999999999996
No 451
>PRK09354 recA recombinase A; Provisional
Probab=88.92 E-value=0.71 Score=47.52 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=33.9
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCe
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~ 127 (564)
++.+.+.||+|||||+.+++.+. .++.++|+-.--.+-. ++++.+|+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvd 111 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVD 111 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCC
Confidence 78999999999999999887764 3567888844333333 234455654
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.92 E-value=0.35 Score=42.85 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.3
Q ss_pred EEEEccCCccHHHHHHH
Q 008489 80 ILHVGPTNSGKTHQALS 96 (564)
Q Consensus 80 viv~apTGsGKT~~~~~ 96 (564)
++++||||||||+.+-.
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999997643
No 453
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.77 E-value=1.1 Score=44.46 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHc-CCCEEEE--ccHH-HHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLR-LLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~~-~~~~li~--~P~r-~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
++..+.++||+|+|||+.+. ..+.. ..++.++ =+.| ..+.|+.......|+++....... . +.-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~-------~-l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA-------A-MTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHH-------H-HHHH
Confidence 45899999999999999852 22222 2344333 3444 444555554445565443211100 0 0000
Q ss_pred ceeccccCcccEEEEcccccc
Q 008489 149 VEMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 149 ~e~~~~l~~~~~vViDEaH~~ 169 (564)
.+.+....+++++|||-+=..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCC
Confidence 011112247899999998554
No 454
>PRK14527 adenylate kinase; Provisional
Probab=88.77 E-value=0.32 Score=45.73 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.3
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
+++.+++.||+||||||++-.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~ 25 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAER 25 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999999754
No 455
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.74 E-value=0.43 Score=50.28 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=27.9
Q ss_pred hcCCceEEEEccCCccHHHHHHH---HH-HcCCCEEEEccHHHHHHHHH
Q 008489 74 KKVRKVILHVGPTNSGKTHQALS---RL-ESSSSGIYCGPLRLLAWEVA 118 (564)
Q Consensus 74 ~~~~~~viv~apTGsGKT~~~~~---~l-~~~~~~li~~P~r~La~q~~ 118 (564)
....+++++.|.||||||.+.-. .+ .++.++||.=|.-+.....+
T Consensus 12 ~~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH-
T ss_pred chhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhc
Confidence 35689999999999999987522 22 33446677777766544333
No 456
>CHL00176 ftsH cell division protein; Validated
Probab=88.74 E-value=2.5 Score=47.47 Aligned_cols=19 Identities=47% Similarity=0.578 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||+|+|||+.+-
T Consensus 216 p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999999973
No 457
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.71 E-value=1.1 Score=44.40 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=24.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~ 107 (564)
.+..+++.|+||+|||+.+.+.+. + +.+++|+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 478999999999999998765443 3 3456666
No 458
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=88.70 E-value=0.84 Score=46.44 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=45.2
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee-
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM- 151 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~- 151 (564)
++.+-+.||+|||||+.+++.+. .++.++++-|-..+-...+ +.+|+.. .+++++.|+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a---~~lGvdl-------------~rllv~~P~~~ 116 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYA---ESLGVDL-------------DRLLVVQPDTG 116 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHH---HHTT--G-------------GGEEEEE-SSH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHH---HhcCccc-------------cceEEecCCcH
Confidence 78899999999999999877664 3456788877666654443 3446543 2344444421
Q ss_pred ------cc---ccCcccEEEEcccccc
Q 008489 152 ------AD---VVSDYDCAVIDEIQML 169 (564)
Q Consensus 152 ------~~---~l~~~~~vViDEaH~~ 169 (564)
.+ .-..+++||+|=+-.+
T Consensus 117 E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 117 EQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHHHHHHHhhcccccEEEEecCccc
Confidence 11 1256889999977655
No 459
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=88.67 E-value=0.34 Score=44.98 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
+.|..+++.|++||||||.+
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIG 20 (176)
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35788999999999999986
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.67 E-value=0.46 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
.++.++++||+|||||+.+=..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999874433
No 461
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.63 E-value=0.65 Score=53.95 Aligned_cols=31 Identities=35% Similarity=0.444 Sum_probs=21.1
Q ss_pred eEEEEccCCccHHHHH--H-HHHHcCCCEEEEcc
Q 008489 79 VILHVGPTNSGKTHQA--L-SRLESSSSGIYCGP 109 (564)
Q Consensus 79 ~viv~apTGsGKT~~~--~-~~l~~~~~~li~~P 109 (564)
++++.||||+|||..+ + ..+..+...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 6899999999999996 3 33434444444443
No 462
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.63 E-value=0.67 Score=42.78 Aligned_cols=19 Identities=42% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..++++|+.||||||.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999997
No 463
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.61 E-value=0.3 Score=46.92 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.|.||+||||||..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999984
No 464
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.58 E-value=0.36 Score=49.15 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=30.9
Q ss_pred CCCCccccchHHHhcCCceEEEEccCCccHHHHHHH---HHHcCCCEEEEccH
Q 008489 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALS---RLESSSSGIYCGPL 110 (564)
Q Consensus 61 ~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~---~l~~~~~~li~~P~ 110 (564)
.++..+.++=......+++++++|+||||||+..-. .+-...+.+.+-=+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt 179 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDT 179 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEecc
Confidence 334444433333335799999999999999999532 22234556665433
No 465
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.50 E-value=1.7 Score=49.31 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCc
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~ 317 (564)
.++|.. ++.-+.++.+.+++..+..+..+||+++..+|.++...... |..+|+|+|..+- -+.++ +..||....
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 455544 88888999888887544489999999999999988888888 8889999998543 24453 777886553
No 466
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.43 E-value=1.8 Score=43.81 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
...+.++++||-|||||+..-..|.
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls 71 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLS 71 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHh
Confidence 3578899999999999998644443
No 467
>PRK06762 hypothetical protein; Provisional
Probab=88.42 E-value=0.78 Score=41.84 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
..++++|+.||||||.+-.
T Consensus 3 ~li~i~G~~GsGKST~A~~ 21 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQ 21 (166)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5689999999999999743
No 468
>PLN02840 tRNA dimethylallyltransferase
Probab=88.39 E-value=0.42 Score=50.32 Aligned_cols=22 Identities=50% Similarity=0.700 Sum_probs=18.6
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~ 96 (564)
.++..++|.||||||||+.+..
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~ 40 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALE 40 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 4567899999999999998854
No 469
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.35 E-value=0.47 Score=54.12 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
..+++.||||+|||+.+
T Consensus 489 ~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999997
No 470
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.27 E-value=0.69 Score=56.14 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=43.7
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC---CCEEEEccHHHHHHHHHHHHHh
Q 008489 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS---SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~---~~~li~~P~r~La~q~~~~l~~ 123 (564)
+|+.|. ++- ..+++++|.|..|||||++....+ .++ .+.++++=|+.+|.++.+|+.+
T Consensus 2 ~t~~Q~~ai~----~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY----TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 345555 443 347899999999999999964433 322 3578999999999999998874
No 471
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=88.14 E-value=0.49 Score=47.41 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=17.6
Q ss_pred eEEEEccCCccHHHHHHHHHHc
Q 008489 79 VILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~ 100 (564)
.++|+||||||||+.+......
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~ 22 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKK 22 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999998665443
No 472
>PLN02748 tRNA dimethylallyltransferase
Probab=88.13 E-value=0.55 Score=50.29 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=18.8
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~ 96 (564)
.+++.++|.||||||||+.+..
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~ 41 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVD 41 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4577899999999999998754
No 473
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.09 E-value=0.5 Score=42.99 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.7
Q ss_pred EEEEccCCccHHHHHH
Q 008489 80 ILHVGPTNSGKTHQAL 95 (564)
Q Consensus 80 viv~apTGsGKT~~~~ 95 (564)
++++||+||||||.+-
T Consensus 1 i~l~G~~GsGKSTla~ 16 (163)
T TIGR01313 1 FVLMGVAGSGKSTIAS 16 (163)
T ss_pred CEEECCCCCCHHHHHH
Confidence 4689999999999873
No 474
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=88.06 E-value=0.49 Score=43.96 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
+++.++++||.|||||..+.+....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3678999999999999988765543
No 475
>PRK00698 tmk thymidylate kinase; Validated
Probab=88.01 E-value=0.62 Score=44.00 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
+++.+++.|+.||||||++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~ 20 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQI 20 (205)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4788999999999999996
No 476
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.97 E-value=0.81 Score=41.43 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=32.1
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~ 138 (564)
+..+.++|..||||||.+ ..+.++|.+.|.++.++.|+..+.
T Consensus 2 g~vIwltGlsGsGKtTlA--------------------~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLA--------------------RALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHH--------------------HHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHH--------------------HHHHHHHHHcCCcEEEecCcchhh
Confidence 567899999999999765 456677778888888888877654
No 477
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.92 E-value=2.2 Score=48.87 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
....++++.||+|+|||+.+
T Consensus 205 ~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 34568999999999999996
No 478
>PRK14532 adenylate kinase; Provisional
Probab=87.90 E-value=0.62 Score=43.53 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEccCCccHHHHHHHHHHcCCCEEEEcc
Q 008489 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~~~~~li~~P 109 (564)
++++.||+||||||++-......+ ..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-MVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CeEEeC
Confidence 489999999999999854433333 344444
No 479
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.83 E-value=0.39 Score=44.65 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=17.0
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
-+.+++.||.||||||.+-.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~ 22 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEK 22 (188)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46789999999999999743
No 480
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=87.63 E-value=0.65 Score=47.51 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~ 107 (564)
.+..+.+.||+|||||+.+++.+.. +++++|+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi 142 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI 142 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE
Confidence 3789999999999999998877754 2367777
No 481
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=87.62 E-value=0.41 Score=36.78 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=13.7
Q ss_pred EEEEccCCccHHHHH
Q 008489 80 ILHVGPTNSGKTHQA 94 (564)
Q Consensus 80 viv~apTGsGKT~~~ 94 (564)
+.+.|+.|||||+.+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999996
No 482
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.57 E-value=0.81 Score=42.24 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
-++++.||||+|||..+
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57899999999999875
No 483
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.50 E-value=0.64 Score=41.73 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
..++-+++.||.|+|||+.++..+..
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35788999999999999999766654
No 484
>PHA00012 I assembly protein
Probab=87.45 E-value=2.4 Score=42.94 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=20.3
Q ss_pred eEEEEccCCccHHHHHHHHHH---cCCCEEEE
Q 008489 79 VILHVGPTNSGKTHQALSRLE---SSSSGIYC 107 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~---~~~~~li~ 107 (564)
+-++.|-.|||||+.+...+. +.|+.+++
T Consensus 3 iylITGkPGSGKSl~aV~~I~~~L~~Gr~VaT 34 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQDKLVKGCIVAT 34 (361)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHcCCEEEe
Confidence 468999999999999855443 44553333
No 485
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.40 E-value=1.3 Score=49.71 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=36.8
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHH--HHHHHHHHHHhcCCe
Q 008489 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRL--LAWEVAKRLNKANVS 127 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P~r~--La~q~~~~l~~~g~~ 127 (564)
...+++|.|+||+|||+.+ .+.+..+..++++=|-.. |...+..-.+..|-.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4688999999999999985 344555556677767654 666666666666644
No 486
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.38 E-value=0.37 Score=47.76 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
..++++.||+|+|||+.+
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 457999999999999997
No 487
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=87.38 E-value=0.67 Score=44.80 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=16.7
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++++.|.|-||||||+.+
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 688999999999999996
No 488
>PTZ00301 uridine kinase; Provisional
Probab=87.38 E-value=0.43 Score=45.63 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...+-|.|++||||||.+
T Consensus 3 ~~iIgIaG~SgSGKTTla 20 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLS 20 (210)
T ss_pred CEEEEEECCCcCCHHHHH
Confidence 457889999999999987
No 489
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.36 E-value=0.62 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.6
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.+++.||+||||||++-.
T Consensus 1 ~i~i~G~pGsGKst~a~~ 18 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAK 18 (183)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 378999999999999754
No 490
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.35 E-value=1.2 Score=51.22 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.||+|+|||+.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 5678999999999999886
No 491
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=87.24 E-value=0.69 Score=46.61 Aligned_cols=22 Identities=45% Similarity=0.595 Sum_probs=17.7
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l 98 (564)
.+.++|+|||+||||-.++...
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LA 24 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALA 24 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHH
Confidence 4679999999999997775533
No 492
>PRK08356 hypothetical protein; Provisional
Probab=87.18 E-value=0.44 Score=44.92 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
...++++||+||||||++-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~ 23 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAK 23 (195)
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 3568899999999999973
No 493
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.14 E-value=0.68 Score=46.09 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=24.2
Q ss_pred CceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRL 112 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~-------~~~li~~P~r~ 112 (564)
-=..+|.||||||||-.. ..|+.. ..+++++|..-
T Consensus 87 P~I~~VYGPTG~GKSqLl-RNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLL-RNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred ceEEEEECCCCCCHHHHH-HHhhhcCcccCCCCceEEECCCCC
Confidence 346789999999999653 334333 36788888764
No 494
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=1.5 Score=45.53 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCceEEEEccCCccHHHHHHHHH---HcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee-
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL---ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM- 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l---~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~- 151 (564)
.+..+++-|.+|-||||..+|.. .+.++++|+.= -+...|+.-|..++|+.. ..+....|.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsG-EES~~QiklRA~RL~~~~--------------~~l~l~aEt~ 156 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSG-EESLQQIKLRADRLGLPT--------------NNLYLLAETN 156 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeC-CcCHHHHHHHHHHhCCCc--------------cceEEehhcC
Confidence 46789999999999999976654 44567888754 345678887777777543 111122211
Q ss_pred -ccc-----cCcccEEEEccccccCCC
Q 008489 152 -ADV-----VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 152 -~~~-----l~~~~~vViDEaH~~~~~ 172 (564)
-+. -.+.+++|||=+|.+..+
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccceeecc
Confidence 111 278999999999998543
No 495
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.97 E-value=1 Score=53.04 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li~ 107 (564)
..+.++|.||.|+|||+.+.+++...+.++.+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~ 62 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKNNLGWY 62 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCCCeEEE
Confidence 46789999999999999998888655555444
No 496
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.95 E-value=0.82 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.+..+.+.||+|||||+.+.+.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999877653
No 497
>PRK06217 hypothetical protein; Validated
Probab=86.93 E-value=0.44 Score=44.42 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=14.8
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.++|.|++||||||.+
T Consensus 3 ~I~i~G~~GsGKSTla 18 (183)
T PRK06217 3 RIHITGASGSGTTTLG 18 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999987
No 498
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.85 E-value=0.71 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.4
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
.++.+++.||+|+|||+.+..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHH
Confidence 478999999999999999743
No 499
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=86.85 E-value=0.68 Score=43.12 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=19.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
+++.++++||+|||||+.+-..+.+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3688999999999999987544443
No 500
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=86.84 E-value=0.48 Score=42.16 Aligned_cols=17 Identities=53% Similarity=0.790 Sum_probs=15.0
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.++++||+|||||+.+
T Consensus 2 krimliG~~g~GKTTL~ 18 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLA 18 (143)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999975
Done!