Query 008489
Match_columns 564
No_of_seqs 548 out of 3677
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 100.0 8.2E-71 2.8E-75 608.9 50.5 484 58-542 136-630 (677)
2 2xau_A PRE-mRNA-splicing facto 100.0 2.1E-47 7.2E-52 430.7 14.6 464 41-534 79-628 (773)
3 2va8_A SSO2462, SKI2-type heli 100.0 6.5E-43 2.2E-47 394.9 31.3 421 35-474 10-533 (715)
4 2zj8_A DNA helicase, putative 100.0 1E-42 3.6E-47 393.3 30.8 421 41-479 8-523 (720)
5 2p6r_A Afuhel308 helicase; pro 100.0 2.5E-42 8.6E-47 389.1 32.1 418 41-476 10-515 (702)
6 2db3_A ATP-dependent RNA helic 100.0 1.5E-37 5.1E-42 330.7 27.1 295 40-357 62-405 (434)
7 4f92_B U5 small nuclear ribonu 100.0 4.5E-37 1.5E-41 369.5 27.2 340 58-403 76-517 (1724)
8 3fht_A ATP-dependent RNA helic 100.0 4.5E-36 1.5E-40 316.3 30.4 325 34-373 26-398 (412)
9 1oyw_A RECQ helicase, ATP-depe 100.0 1E-36 3.4E-41 331.1 25.5 306 41-369 9-354 (523)
10 4f92_B U5 small nuclear ribonu 100.0 8.5E-37 2.9E-41 367.1 26.8 341 22-372 892-1322(1724)
11 3pey_A ATP-dependent RNA helic 100.0 3.3E-36 1.1E-40 315.2 27.7 309 35-359 7-356 (395)
12 2j0s_A ATP-dependent RNA helic 100.0 2E-36 6.7E-41 319.4 25.9 315 35-373 39-401 (410)
13 2v1x_A ATP-dependent DNA helic 100.0 7E-36 2.4E-40 327.9 31.1 305 41-369 28-385 (591)
14 2i4i_A ATP-dependent RNA helic 100.0 2.2E-36 7.6E-41 319.5 25.8 302 35-359 17-383 (417)
15 1s2m_A Putative ATP-dependent 100.0 5.2E-36 1.8E-40 315.0 27.3 301 35-359 23-365 (400)
16 3eiq_A Eukaryotic initiation f 100.0 2.2E-36 7.7E-41 319.0 23.6 297 40-359 46-387 (414)
17 1hv8_A Putative ATP-dependent 100.0 1.2E-35 4.1E-40 307.8 26.7 296 41-359 13-345 (367)
18 4a4z_A Antiviral helicase SKI2 100.0 2.6E-36 9.1E-41 348.4 24.0 324 58-390 37-525 (997)
19 1xti_A Probable ATP-dependent 100.0 8.7E-36 3E-40 312.1 24.3 301 35-359 10-357 (391)
20 2xgj_A ATP-dependent RNA helic 100.0 1.4E-35 4.8E-40 342.4 27.5 323 57-388 83-529 (1010)
21 2z0m_A 337AA long hypothetical 100.0 1.5E-35 5.1E-40 303.6 23.6 299 41-365 1-329 (337)
22 3l9o_A ATP-dependent RNA helic 100.0 2.5E-36 8.5E-41 351.5 18.2 324 58-390 181-629 (1108)
23 3fmp_B ATP-dependent RNA helic 100.0 2.5E-36 8.5E-41 325.5 16.5 311 34-359 93-446 (479)
24 3i5x_A ATP-dependent RNA helic 100.0 5E-35 1.7E-39 321.6 26.8 309 39-366 77-457 (563)
25 3sqw_A ATP-dependent RNA helic 100.0 7.3E-35 2.5E-39 321.2 27.7 314 34-366 21-406 (579)
26 1fuu_A Yeast initiation factor 100.0 8.5E-36 2.9E-40 312.3 11.7 301 35-359 23-366 (394)
27 3fho_A ATP-dependent RNA helic 100.0 2.9E-34 9.8E-39 311.3 16.3 320 41-375 126-491 (508)
28 2jlq_A Serine protease subunit 100.0 1.2E-32 3.9E-37 294.1 17.4 284 58-358 1-310 (451)
29 3oiy_A Reverse gyrase helicase 100.0 1.3E-32 4.3E-37 290.9 16.5 284 45-357 10-363 (414)
30 3o8b_A HCV NS3 protease/helica 100.0 3.6E-32 1.2E-36 297.3 18.9 273 64-359 220-514 (666)
31 2whx_A Serine protease/ntpase/ 100.0 5.7E-32 2E-36 297.8 16.4 280 60-357 170-476 (618)
32 2ykg_A Probable ATP-dependent 100.0 5.2E-32 1.8E-36 305.1 13.8 283 57-359 9-516 (696)
33 2z83_A Helicase/nucleoside tri 100.0 2.1E-31 7.1E-36 284.9 13.1 265 75-358 19-312 (459)
34 4a2p_A RIG-I, retinoic acid in 100.0 4.4E-31 1.5E-35 289.2 15.8 282 58-359 4-508 (556)
35 3tbk_A RIG-I helicase domain; 100.0 9.6E-31 3.3E-35 286.2 17.5 280 60-359 3-507 (555)
36 2wv9_A Flavivirin protease NS2 100.0 7.6E-31 2.6E-35 290.8 14.0 278 61-356 215-530 (673)
37 1wp9_A ATP-dependent RNA helic 100.0 6.3E-30 2.2E-34 274.0 20.3 280 60-359 8-475 (494)
38 4gl2_A Interferon-induced heli 100.0 1.4E-30 4.7E-35 293.6 15.7 272 60-345 6-510 (699)
39 1yks_A Genome polyprotein [con 100.0 1.2E-30 4.2E-35 277.3 13.3 263 75-356 6-296 (440)
40 2v6i_A RNA helicase; membrane, 100.0 3.3E-30 1.1E-34 273.4 16.1 265 76-356 1-288 (431)
41 1gm5_A RECG; helicase, replica 100.0 1.6E-30 5.3E-35 291.7 13.9 289 43-357 356-695 (780)
42 4a2q_A RIG-I, retinoic acid in 100.0 7.5E-30 2.6E-34 291.1 18.3 283 57-359 244-749 (797)
43 2fwr_A DNA repair protein RAD2 100.0 7.1E-30 2.4E-34 274.5 14.2 271 61-359 93-454 (472)
44 2oca_A DAR protein, ATP-depend 100.0 1.6E-29 5.6E-34 274.3 14.2 280 59-357 111-456 (510)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 7.1E-29 2.4E-33 288.9 18.5 244 57-318 54-352 (1054)
46 4a2w_A RIG-I, retinoic acid in 100.0 7.8E-29 2.7E-33 286.1 18.5 282 58-359 245-749 (936)
47 2eyq_A TRCF, transcription-rep 100.0 4.2E-28 1.4E-32 284.0 23.8 283 57-359 600-922 (1151)
48 4ddu_A Reverse gyrase; topoiso 100.0 6.5E-29 2.2E-33 289.2 15.8 246 58-319 76-388 (1104)
49 3h1t_A Type I site-specific re 99.9 4.5E-26 1.5E-30 251.7 19.2 280 60-356 177-558 (590)
50 1tf5_A Preprotein translocase 99.9 2E-26 6.7E-31 254.2 15.2 278 57-357 80-543 (844)
51 3dmq_A RNA polymerase-associat 99.9 1.1E-24 3.7E-29 252.0 18.0 288 60-358 152-614 (968)
52 2fsf_A Preprotein translocase 99.9 1.5E-24 5.2E-29 238.6 13.9 101 240-357 442-581 (853)
53 1nkt_A Preprotein translocase 99.9 1.5E-23 5E-28 231.1 20.3 279 57-357 108-615 (922)
54 1z63_A Helicase of the SNF2/RA 99.9 2E-23 6.7E-28 225.9 19.2 285 60-359 36-453 (500)
55 1z3i_X Similar to RAD54-like; 99.8 3E-20 1E-24 206.5 22.6 109 240-359 417-528 (644)
56 3eaq_A Heat resistant RNA depe 99.8 9.3E-22 3.2E-26 188.2 5.7 109 236-359 28-138 (212)
57 3mwy_W Chromo domain-containin 99.8 4.6E-20 1.6E-24 210.0 20.3 285 60-359 235-684 (800)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2E-19 6.7E-24 207.0 17.8 280 60-358 270-708 (1038)
59 1c4o_A DNA nucleotide excision 99.8 3.8E-18 1.3E-22 189.6 26.4 110 239-359 439-550 (664)
60 3i32_A Heat resistant RNA depe 99.8 1.6E-20 5.4E-25 188.4 6.2 109 236-359 25-135 (300)
61 2hjv_A ATP-dependent RNA helic 99.8 3E-19 1E-23 163.4 13.8 110 235-359 31-142 (163)
62 3jux_A Protein translocase sub 99.8 1.2E-18 4.3E-23 188.1 20.0 103 239-358 474-586 (822)
63 3iuy_A Probable ATP-dependent 99.8 3.7E-19 1.3E-23 171.9 13.2 160 40-207 26-217 (228)
64 2rb4_A ATP-dependent RNA helic 99.8 7.5E-19 2.5E-23 162.7 14.0 130 235-373 30-165 (175)
65 1fuk_A Eukaryotic initiation f 99.8 9.9E-19 3.4E-23 160.3 12.7 123 236-373 27-155 (165)
66 1t5i_A C_terminal domain of A 99.8 5.4E-19 1.8E-23 163.2 10.6 109 235-358 27-137 (172)
67 3fe2_A Probable ATP-dependent 99.8 1.8E-18 6.1E-23 168.8 13.4 161 40-208 35-227 (242)
68 2pl3_A Probable ATP-dependent 99.8 4E-18 1.4E-22 165.5 14.7 166 34-208 26-222 (236)
69 2p6n_A ATP-dependent RNA helic 99.8 1.4E-18 4.8E-23 163.1 10.8 106 238-358 53-160 (191)
70 1vec_A ATP-dependent RNA helic 99.8 5.8E-18 2E-22 160.6 15.1 159 41-207 10-196 (206)
71 3fmo_B ATP-dependent RNA helic 99.8 6.2E-18 2.1E-22 170.3 15.6 170 32-208 91-287 (300)
72 3ly5_A ATP-dependent RNA helic 99.7 2.1E-18 7.2E-23 170.4 10.5 159 41-207 61-251 (262)
73 3ber_A Probable ATP-dependent 99.7 7.6E-18 2.6E-22 165.1 14.0 165 35-208 45-237 (249)
74 2gxq_A Heat resistant RNA depe 99.7 9.5E-18 3.3E-22 159.2 13.9 160 41-208 8-195 (207)
75 1q0u_A Bstdead; DEAD protein, 99.7 5.3E-18 1.8E-22 162.7 11.8 159 41-207 11-200 (219)
76 3dkp_A Probable ATP-dependent 99.7 4E-18 1.4E-22 166.5 11.0 163 40-209 35-231 (245)
77 1qde_A EIF4A, translation init 99.7 1.3E-17 4.5E-22 160.4 13.6 165 35-208 16-206 (224)
78 2jgn_A DBX, DDX3, ATP-dependen 99.7 6.5E-18 2.2E-22 157.8 11.0 107 238-359 45-153 (185)
79 2oxc_A Probable ATP-dependent 99.7 1.1E-17 3.9E-22 161.8 12.9 164 34-206 25-216 (230)
80 3bor_A Human initiation factor 99.7 1.1E-17 3.6E-22 162.8 11.9 166 34-208 31-224 (237)
81 1wrb_A DJVLGB; RNA helicase, D 99.7 1.9E-17 6.4E-22 162.6 12.1 166 35-208 25-229 (253)
82 1t6n_A Probable ATP-dependent 99.7 2E-17 6.7E-22 158.8 11.0 165 34-207 15-209 (220)
83 2yjt_D ATP-dependent RNA helic 99.6 5.6E-19 1.9E-23 162.8 0.0 108 237-359 28-137 (170)
84 2ipc_A Preprotein translocase 99.6 6.2E-14 2.1E-18 154.4 19.5 110 57-171 76-216 (997)
85 3b6e_A Interferon-induced heli 99.6 6E-15 2.1E-19 140.4 9.0 112 58-171 30-176 (216)
86 2vl7_A XPD; helicase, unknown 99.5 2.9E-14 1E-18 155.0 11.5 75 58-133 5-83 (540)
87 3llm_A ATP-dependent RNA helic 99.5 1.7E-14 5.7E-19 139.9 8.4 107 61-169 61-188 (235)
88 2d7d_A Uvrabc system protein B 99.5 1E-13 3.4E-18 154.0 13.8 110 239-359 445-556 (661)
89 1rif_A DAR protein, DNA helica 99.5 1.4E-13 4.8E-18 137.2 9.8 132 61-199 113-262 (282)
90 2fz4_A DNA repair protein RAD2 99.4 3.9E-13 1.3E-17 130.4 12.4 108 60-172 92-207 (237)
91 1z5z_A Helicase of the SNF2/RA 99.4 1.7E-12 5.7E-17 128.3 11.4 110 238-359 111-224 (271)
92 3crv_A XPD/RAD3 related DNA he 98.9 9.9E-10 3.4E-14 119.7 7.6 74 61-134 3-84 (551)
93 3i4u_A ATP-dependent RNA helic 98.8 1.4E-09 4.9E-14 106.5 4.1 128 403-535 6-154 (270)
94 2gk6_A Regulator of nonsense t 98.3 4.8E-06 1.7E-10 91.8 13.8 67 60-128 179-251 (624)
95 2xzl_A ATP-dependent helicase 98.2 6.2E-06 2.1E-10 93.1 12.9 68 59-128 358-431 (802)
96 4b3f_X DNA-binding protein smu 98.2 3.6E-06 1.2E-10 93.3 10.0 68 60-128 188-260 (646)
97 1w36_D RECD, exodeoxyribonucle 98.1 5.9E-06 2E-10 90.7 10.6 59 63-123 151-218 (608)
98 2wjy_A Regulator of nonsense t 98.1 1.7E-05 5.7E-10 89.5 12.9 67 60-128 355-427 (800)
99 3upu_A ATP-dependent DNA helic 98.0 1.6E-05 5.4E-10 84.4 10.9 131 58-198 22-166 (459)
100 3vkw_A Replicase large subunit 97.8 2.3E-05 7.9E-10 81.5 7.6 107 76-199 160-272 (446)
101 3e1s_A Exodeoxyribonuclease V, 97.8 8.4E-05 2.9E-09 80.8 10.9 123 61-198 189-317 (574)
102 4a15_A XPD helicase, ATP-depen 97.7 3.4E-05 1.2E-09 84.8 6.8 58 76-133 21-87 (620)
103 2j9r_A Thymidine kinase; TK1, 97.4 0.00035 1.2E-08 65.4 7.6 86 75-172 26-116 (214)
104 2orw_A Thymidine kinase; TMTK, 97.3 9.7E-05 3.3E-09 68.0 3.3 35 76-110 2-40 (184)
105 1xx6_A Thymidine kinase; NESG, 97.2 0.00018 6.3E-09 66.5 3.2 37 75-111 6-46 (191)
106 2orv_A Thymidine kinase; TP4A 96.9 0.0005 1.7E-08 64.9 3.4 80 75-170 17-103 (234)
107 3e2i_A Thymidine kinase; Zn-bi 96.9 0.0021 7.1E-08 60.0 7.4 84 75-171 26-115 (219)
108 3ec2_A DNA replication protein 96.8 0.0009 3.1E-08 60.9 4.7 73 76-170 37-113 (180)
109 2b8t_A Thymidine kinase; deoxy 96.8 0.00017 5.9E-09 68.3 -0.3 37 75-111 10-50 (223)
110 2kjq_A DNAA-related protein; s 96.8 0.0022 7.4E-08 56.7 6.7 63 76-171 35-97 (149)
111 3bos_A Putative DNA replicatio 96.7 0.0043 1.5E-07 58.7 8.3 19 76-94 51-69 (242)
112 1w4r_A Thymidine kinase; type 96.6 0.0013 4.3E-08 60.6 3.8 86 68-169 11-103 (195)
113 2w58_A DNAI, primosome compone 96.2 0.004 1.4E-07 57.6 4.8 17 78-94 55-71 (202)
114 2p65_A Hypothetical protein PF 96.1 0.02 6.8E-07 51.4 8.8 19 76-94 42-60 (187)
115 1l8q_A Chromosomal replication 95.9 0.007 2.4E-07 60.5 5.5 72 77-171 37-112 (324)
116 1jbk_A CLPB protein; beta barr 95.9 0.021 7.3E-07 51.4 8.4 19 76-94 42-60 (195)
117 3lfu_A DNA helicase II; SF1 he 95.5 0.0085 2.9E-07 66.0 4.5 62 59-124 7-77 (647)
118 2qgz_A Helicase loader, putati 95.3 0.0093 3.2E-07 59.4 3.8 69 77-169 152-226 (308)
119 2z4s_A Chromosomal replication 95.1 0.018 6.3E-07 60.2 5.3 72 77-171 130-208 (440)
120 2qby_B CDC6 homolog 3, cell di 94.9 0.035 1.2E-06 56.5 6.7 18 77-94 45-62 (384)
121 3syl_A Protein CBBX; photosynt 94.9 0.011 3.9E-07 58.4 2.9 19 76-94 66-84 (309)
122 3pfi_A Holliday junction ATP-d 94.9 0.031 1.1E-06 56.0 6.2 20 77-96 55-74 (338)
123 3eie_A Vacuolar protein sortin 94.7 0.063 2.1E-06 53.5 8.0 20 77-96 51-70 (322)
124 2v1u_A Cell division control p 94.5 0.048 1.7E-06 55.3 6.5 19 76-94 43-61 (387)
125 2qby_A CDC6 homolog 1, cell di 94.4 0.084 2.9E-06 53.4 8.1 20 76-95 44-63 (386)
126 3h4m_A Proteasome-activating n 94.3 0.067 2.3E-06 52.0 6.8 20 76-95 50-69 (285)
127 1hqc_A RUVB; extended AAA-ATPa 94.3 0.036 1.2E-06 55.0 4.9 19 77-95 38-56 (324)
128 3b9p_A CG5977-PA, isoform A; A 94.2 0.13 4.6E-06 50.2 8.8 20 76-95 53-72 (297)
129 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.12 4.2E-06 51.5 8.2 20 77-96 45-64 (322)
130 2qp9_X Vacuolar protein sortin 94.0 0.1 3.6E-06 52.8 7.7 20 77-96 84-103 (355)
131 3u61_B DNA polymerase accessor 93.7 0.017 5.7E-07 57.7 1.1 19 78-96 49-67 (324)
132 2o0j_A Terminase, DNA packagin 93.6 0.25 8.4E-06 50.5 9.7 108 61-171 163-287 (385)
133 4a15_A XPD helicase, ATP-depen 93.6 0.1 3.6E-06 56.9 7.4 110 239-358 448-584 (620)
134 1sxj_A Activator 1 95 kDa subu 93.6 0.029 9.9E-07 60.0 2.8 22 77-98 77-98 (516)
135 3exa_A TRNA delta(2)-isopenten 93.5 0.056 1.9E-06 53.5 4.4 23 75-97 1-23 (322)
136 3d8b_A Fidgetin-like protein 1 93.5 0.14 4.7E-06 51.9 7.5 21 76-96 116-136 (357)
137 1pjr_A PCRA; DNA repair, DNA r 93.4 0.05 1.7E-06 60.7 4.6 61 59-123 9-78 (724)
138 1uaa_A REP helicase, protein ( 93.4 0.05 1.7E-06 60.2 4.5 58 62-123 3-69 (673)
139 3kl4_A SRP54, signal recogniti 93.2 0.079 2.7E-06 55.0 5.2 88 76-170 96-192 (433)
140 2zpa_A Uncharacterized protein 93.0 0.057 2E-06 58.9 4.0 91 61-170 175-268 (671)
141 1kgd_A CASK, peripheral plasma 92.9 0.051 1.7E-06 49.2 2.9 20 75-94 3-22 (180)
142 3u4q_A ATP-dependent helicase/ 92.8 0.095 3.2E-06 62.1 5.9 60 60-123 9-79 (1232)
143 3cpe_A Terminase, DNA packagin 92.7 0.32 1.1E-05 52.8 9.5 108 61-171 163-287 (592)
144 3a8t_A Adenylate isopentenyltr 92.6 0.081 2.8E-06 52.9 4.2 20 77-96 40-59 (339)
145 1fnn_A CDC6P, cell division co 92.6 0.27 9.3E-06 49.8 8.4 16 79-94 46-61 (389)
146 2qmh_A HPR kinase/phosphorylas 92.5 0.098 3.3E-06 48.1 4.2 26 75-100 32-57 (205)
147 2zan_A Vacuolar protein sortin 92.4 0.23 7.8E-06 51.9 7.5 21 76-96 166-186 (444)
148 1qhx_A CPT, protein (chloramph 92.1 0.074 2.5E-06 47.6 2.9 20 76-95 2-21 (178)
149 2dr3_A UPF0273 protein PH0284; 92.0 0.12 4.2E-06 48.7 4.5 50 76-126 22-75 (247)
150 1kht_A Adenylate kinase; phosp 91.9 0.073 2.5E-06 48.1 2.8 19 76-94 2-20 (192)
151 2gno_A DNA polymerase III, gam 91.8 0.25 8.6E-06 48.8 6.6 20 77-96 18-37 (305)
152 1jr3_A DNA polymerase III subu 91.7 0.06 2.1E-06 54.5 2.1 17 78-94 39-55 (373)
153 3tau_A Guanylate kinase, GMP k 91.7 0.084 2.9E-06 48.9 2.9 21 76-96 7-27 (208)
154 3n70_A Transport activator; si 91.6 0.086 2.9E-06 45.8 2.7 19 76-94 23-41 (145)
155 3crv_A XPD/RAD3 related DNA he 91.5 0.51 1.8E-05 50.7 9.3 110 238-358 392-531 (551)
156 1a5t_A Delta prime, HOLB; zinc 91.3 0.34 1.2E-05 48.4 7.2 18 78-95 25-42 (334)
157 2eyu_A Twitching motility prot 91.3 0.089 3.1E-06 50.8 2.7 20 75-94 23-42 (261)
158 3tr0_A Guanylate kinase, GMP k 91.2 0.1 3.4E-06 47.9 2.9 19 76-94 6-24 (205)
159 3foz_A TRNA delta(2)-isopenten 91.2 0.14 4.9E-06 50.4 4.0 20 77-96 10-29 (316)
160 3ney_A 55 kDa erythrocyte memb 91.1 0.11 3.6E-06 47.9 2.9 21 75-95 17-37 (197)
161 3co5_A Putative two-component 91.1 0.093 3.2E-06 45.4 2.4 19 76-94 26-44 (143)
162 1zp6_A Hypothetical protein AT 91.1 0.1 3.5E-06 47.3 2.7 20 75-94 7-26 (191)
163 3vaa_A Shikimate kinase, SK; s 91.1 0.11 3.7E-06 47.7 2.9 19 76-94 24-42 (199)
164 3trf_A Shikimate kinase, SK; a 91.0 0.11 3.6E-06 46.9 2.7 19 77-95 5-23 (185)
165 3lw7_A Adenylate kinase relate 91.0 0.1 3.5E-06 46.2 2.6 26 78-104 2-27 (179)
166 3umf_A Adenylate kinase; rossm 90.9 0.11 3.7E-06 48.7 2.7 21 76-96 28-48 (217)
167 2j41_A Guanylate kinase; GMP, 90.8 0.12 4.1E-06 47.4 2.9 20 75-94 4-23 (207)
168 1tev_A UMP-CMP kinase; ploop, 90.8 0.11 3.7E-06 47.0 2.6 20 76-95 2-21 (196)
169 2zts_A Putative uncharacterize 90.7 0.16 5.4E-06 48.0 3.8 49 76-125 29-82 (251)
170 1lvg_A Guanylate kinase, GMP k 90.5 0.11 3.7E-06 47.8 2.4 19 76-94 3-21 (198)
171 4gp7_A Metallophosphoesterase; 90.5 0.12 4.2E-06 46.1 2.7 20 76-95 8-27 (171)
172 2d7d_A Uvrabc system protein B 90.5 0.39 1.3E-05 52.9 7.2 55 78-132 33-90 (661)
173 1c9k_A COBU, adenosylcobinamid 90.3 0.14 4.9E-06 46.2 3.0 43 80-122 2-44 (180)
174 1ak2_A Adenylate kinase isoenz 90.2 0.14 4.7E-06 48.3 2.9 28 68-95 7-34 (233)
175 2qor_A Guanylate kinase; phosp 90.2 0.13 4.5E-06 47.3 2.7 19 76-94 11-29 (204)
176 2oap_1 GSPE-2, type II secreti 90.2 0.12 4E-06 55.0 2.6 19 76-94 259-277 (511)
177 2ze6_A Isopentenyl transferase 90.1 0.13 4.3E-06 49.4 2.5 17 78-94 2-18 (253)
178 3iij_A Coilin-interacting nucl 90.1 0.14 4.8E-06 45.9 2.7 21 75-95 9-29 (180)
179 3a00_A Guanylate kinase, GMP k 90.0 0.13 4.6E-06 46.5 2.5 18 77-94 1-18 (186)
180 3cm0_A Adenylate kinase; ATP-b 89.9 0.13 4.4E-06 46.4 2.3 20 76-95 3-22 (186)
181 1knq_A Gluconate kinase; ALFA/ 89.9 0.15 5.2E-06 45.4 2.8 20 75-94 6-25 (175)
182 3cmu_A Protein RECA, recombina 89.9 0.24 8.1E-06 60.6 5.1 35 76-110 1426-1464(2050)
183 2ehv_A Hypothetical protein PH 89.8 0.3 1E-05 46.1 4.9 32 76-107 29-65 (251)
184 3crm_A TRNA delta(2)-isopenten 89.8 0.22 7.6E-06 49.5 4.0 20 77-96 5-24 (323)
185 2z43_A DNA repair and recombin 89.7 0.27 9.3E-06 48.9 4.8 32 76-107 106-147 (324)
186 1kag_A SKI, shikimate kinase I 89.7 0.15 5.1E-06 45.3 2.5 18 77-94 4-21 (173)
187 2v9p_A Replication protein E1; 89.7 0.19 6.6E-06 49.6 3.5 30 76-106 125-156 (305)
188 2plr_A DTMP kinase, probable t 89.6 0.17 5.7E-06 46.5 2.8 20 75-94 2-21 (213)
189 1y63_A LMAJ004144AAA protein; 89.6 0.17 5.8E-06 45.7 2.8 19 76-94 9-27 (184)
190 1ly1_A Polynucleotide kinase; 89.6 0.16 5.5E-06 45.3 2.6 19 78-96 3-21 (181)
191 4eun_A Thermoresistant glucoki 89.5 0.18 6E-06 46.3 2.9 19 76-94 28-46 (200)
192 1qvr_A CLPB protein; coiled co 89.4 0.44 1.5E-05 54.2 6.7 19 76-94 190-208 (854)
193 3kb2_A SPBC2 prophage-derived 89.4 0.16 5.6E-06 44.8 2.5 17 79-95 3-19 (173)
194 2cvh_A DNA repair and recombin 89.2 0.3 1E-05 45.1 4.3 32 76-107 19-51 (220)
195 2rhm_A Putative kinase; P-loop 89.1 0.18 6.3E-06 45.5 2.8 19 76-94 4-22 (193)
196 3jvv_A Twitching mobility prot 89.0 0.2 7E-06 50.6 3.2 20 75-94 121-140 (356)
197 2gza_A Type IV secretion syste 89.0 0.17 5.7E-06 51.4 2.5 19 76-94 174-192 (361)
198 2c95_A Adenylate kinase 1; tra 88.9 0.2 6.8E-06 45.4 2.8 20 76-95 8-27 (196)
199 2ewv_A Twitching motility prot 88.8 0.18 6.2E-06 51.4 2.6 20 75-94 134-153 (372)
200 3uie_A Adenylyl-sulfate kinase 88.8 0.2 7E-06 45.8 2.8 20 75-94 23-42 (200)
201 3cmw_A Protein RECA, recombina 88.8 0.25 8.4E-06 59.6 4.1 79 76-170 1430-1522(1706)
202 1z6g_A Guanylate kinase; struc 88.7 0.2 6.7E-06 46.8 2.7 19 76-94 22-40 (218)
203 1vma_A Cell division protein F 88.7 0.81 2.8E-05 45.1 7.3 87 76-168 103-197 (306)
204 1n0w_A DNA repair protein RAD5 88.7 0.37 1.3E-05 45.2 4.6 24 76-99 23-46 (243)
205 1r6b_X CLPA protein; AAA+, N-t 88.7 0.39 1.3E-05 53.7 5.6 16 79-94 490-505 (758)
206 2v54_A DTMP kinase, thymidylat 88.6 0.22 7.6E-06 45.4 2.9 20 76-95 3-22 (204)
207 1nks_A Adenylate kinase; therm 88.6 0.54 1.9E-05 42.2 5.6 17 78-94 2-18 (194)
208 3d3q_A TRNA delta(2)-isopenten 88.6 0.29 9.8E-06 49.0 3.9 19 78-96 8-26 (340)
209 3sr0_A Adenylate kinase; phosp 88.6 0.2 6.7E-06 46.5 2.5 19 79-97 2-20 (206)
210 1znw_A Guanylate kinase, GMP k 88.5 0.23 7.7E-06 45.9 2.9 20 75-94 18-37 (207)
211 3c8u_A Fructokinase; YP_612366 88.4 0.21 7.1E-06 46.2 2.5 19 76-94 21-39 (208)
212 3te6_A Regulatory protein SIR3 88.2 0.24 8.1E-06 49.2 3.0 27 68-94 36-62 (318)
213 3dm5_A SRP54, signal recogniti 88.2 0.64 2.2E-05 48.2 6.4 52 77-128 100-158 (443)
214 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.45 1.5E-05 44.1 4.9 32 76-107 22-57 (235)
215 2v3c_C SRP54, signal recogniti 88.2 0.18 6.3E-06 52.4 2.2 87 78-170 100-193 (432)
216 3lnc_A Guanylate kinase, GMP k 88.1 0.17 5.7E-06 47.6 1.7 19 76-94 26-44 (231)
217 1p9r_A General secretion pathw 88.0 0.22 7.5E-06 51.5 2.7 20 75-94 165-184 (418)
218 3eph_A TRNA isopentenyltransfe 88.0 0.28 9.5E-06 50.2 3.4 20 77-96 2-21 (409)
219 2i1q_A DNA repair and recombin 87.9 0.32 1.1E-05 48.2 3.8 24 76-99 97-120 (322)
220 2bdt_A BH3686; alpha-beta prot 87.9 0.2 7E-06 45.2 2.1 18 77-94 2-19 (189)
221 3asz_A Uridine kinase; cytidin 87.9 0.25 8.5E-06 45.5 2.8 19 76-94 5-23 (211)
222 3hr8_A Protein RECA; alpha and 87.8 0.31 1.1E-05 49.2 3.6 34 76-109 60-97 (356)
223 1zuh_A Shikimate kinase; alpha 87.7 0.25 8.5E-06 43.7 2.6 18 77-94 7-24 (168)
224 1zd8_A GTP:AMP phosphotransfer 87.7 0.25 8.6E-06 46.2 2.7 20 77-96 7-26 (227)
225 1aky_A Adenylate kinase; ATP:A 87.5 0.28 9.6E-06 45.6 2.9 20 76-95 3-22 (220)
226 3t61_A Gluconokinase; PSI-biol 87.5 0.24 8.3E-06 45.3 2.4 18 77-94 18-35 (202)
227 2pt7_A CAG-ALFA; ATPase, prote 87.4 0.24 8.1E-06 49.5 2.5 19 76-94 170-188 (330)
228 2px0_A Flagellar biosynthesis 87.4 0.58 2E-05 45.9 5.2 82 76-168 104-193 (296)
229 2bwj_A Adenylate kinase 5; pho 87.4 0.27 9.1E-06 44.6 2.6 18 77-94 12-29 (199)
230 1s96_A Guanylate kinase, GMP k 87.3 0.29 1E-05 45.8 2.9 19 76-94 15-33 (219)
231 3cf0_A Transitional endoplasmi 87.3 0.84 2.9E-05 44.7 6.4 32 76-107 48-79 (301)
232 2yvu_A Probable adenylyl-sulfa 87.3 0.3 1E-05 44.0 2.8 20 75-94 11-30 (186)
233 2wwf_A Thymidilate kinase, put 87.2 0.3 1E-05 44.8 2.9 19 76-94 9-27 (212)
234 2pez_A Bifunctional 3'-phospho 87.2 0.3 1E-05 43.7 2.8 19 76-94 4-22 (179)
235 1qvr_A CLPB protein; coiled co 87.1 0.45 1.5E-05 54.1 4.8 17 78-94 589-605 (854)
236 1cke_A CK, MSSA, protein (cyti 87.0 0.29 9.8E-06 45.6 2.7 18 77-94 5-22 (227)
237 2vli_A Antibiotic resistance p 87.0 0.21 7.1E-06 44.8 1.6 21 76-96 4-24 (183)
238 2qt1_A Nicotinamide riboside k 86.9 0.3 1E-05 44.8 2.8 21 75-95 19-39 (207)
239 3e70_C DPA, signal recognition 86.9 1 3.5E-05 44.8 6.8 53 76-128 128-187 (328)
240 1e9r_A Conjugal transfer prote 86.9 0.44 1.5E-05 49.4 4.3 41 75-115 51-95 (437)
241 2cdn_A Adenylate kinase; phosp 86.8 0.32 1.1E-05 44.4 2.9 20 76-95 19-38 (201)
242 3fb4_A Adenylate kinase; psych 86.8 0.29 9.8E-06 45.3 2.5 18 79-96 2-19 (216)
243 1qf9_A UMP/CMP kinase, protein 86.6 0.31 1.1E-05 43.8 2.6 19 77-95 6-24 (194)
244 1zak_A Adenylate kinase; ATP:A 86.5 0.31 1.1E-05 45.4 2.6 19 77-95 5-23 (222)
245 1e6c_A Shikimate kinase; phosp 86.5 0.3 1E-05 43.2 2.4 17 78-94 3-19 (173)
246 1v5w_A DMC1, meiotic recombina 86.5 0.51 1.7E-05 47.4 4.3 32 76-107 121-162 (343)
247 3pxi_A Negative regulator of g 86.4 0.99 3.4E-05 50.4 7.1 16 79-94 523-538 (758)
248 1gvn_B Zeta; postsegregational 86.4 0.3 1E-05 47.7 2.6 21 76-96 32-52 (287)
249 3be4_A Adenylate kinase; malar 86.4 0.33 1.1E-05 45.0 2.7 18 77-94 5-22 (217)
250 4ag6_A VIRB4 ATPase, type IV s 86.3 0.6 2.1E-05 47.7 4.9 37 76-112 34-74 (392)
251 1nn5_A Similar to deoxythymidy 86.3 0.36 1.2E-05 44.4 2.9 19 76-94 8-26 (215)
252 2bbw_A Adenylate kinase 4, AK4 86.2 0.36 1.2E-05 45.8 2.9 19 76-94 26-44 (246)
253 2iyv_A Shikimate kinase, SK; t 86.1 0.33 1.1E-05 43.6 2.5 17 78-94 3-19 (184)
254 2qz4_A Paraplegin; AAA+, SPG7, 86.1 0.36 1.2E-05 45.9 2.9 19 77-95 39-57 (262)
255 1via_A Shikimate kinase; struc 86.0 0.33 1.1E-05 43.2 2.4 16 79-94 6-21 (175)
256 4edh_A DTMP kinase, thymidylat 85.9 0.65 2.2E-05 43.1 4.4 20 75-94 4-23 (213)
257 1rz3_A Hypothetical protein rb 85.9 0.76 2.6E-05 42.0 4.9 19 76-94 21-39 (201)
258 2jaq_A Deoxyguanosine kinase; 85.8 0.36 1.2E-05 43.9 2.6 16 79-94 2-17 (205)
259 1lv7_A FTSH; alpha/beta domain 85.7 0.37 1.3E-05 45.9 2.8 18 77-94 45-62 (257)
260 2zr9_A Protein RECA, recombina 85.6 0.69 2.4E-05 46.5 4.8 32 76-107 60-95 (349)
261 1ukz_A Uridylate kinase; trans 85.6 0.69 2.4E-05 42.1 4.5 20 77-96 15-34 (203)
262 1pzn_A RAD51, DNA repair and r 85.6 0.59 2E-05 47.0 4.3 23 76-98 130-152 (349)
263 1d2n_A N-ethylmaleimide-sensit 85.5 0.35 1.2E-05 46.5 2.5 19 77-95 64-82 (272)
264 1ex7_A Guanylate kinase; subst 85.4 0.56 1.9E-05 42.6 3.6 18 78-95 2-19 (186)
265 1f2t_A RAD50 ABC-ATPase; DNA d 85.4 0.57 2E-05 40.8 3.6 23 77-99 23-47 (149)
266 1m7g_A Adenylylsulfate kinase; 85.4 0.41 1.4E-05 44.2 2.8 20 75-94 23-42 (211)
267 1uf9_A TT1252 protein; P-loop, 85.4 0.42 1.4E-05 43.5 2.8 20 76-95 7-26 (203)
268 4a74_A DNA repair and recombin 85.4 0.49 1.7E-05 43.9 3.3 22 76-97 24-45 (231)
269 3tif_A Uncharacterized ABC tra 85.4 0.42 1.4E-05 45.2 2.9 64 248-315 150-218 (235)
270 3tlx_A Adenylate kinase 2; str 85.3 0.41 1.4E-05 45.4 2.8 21 76-96 28-48 (243)
271 3dl0_A Adenylate kinase; phosp 85.3 0.55 1.9E-05 43.3 3.7 18 79-96 2-19 (216)
272 3b9q_A Chloroplast SRP recepto 85.1 0.83 2.8E-05 44.9 5.0 32 76-107 99-134 (302)
273 2bjv_A PSP operon transcriptio 85.1 0.4 1.4E-05 45.9 2.6 19 76-94 28-46 (265)
274 3nwj_A ATSK2; P loop, shikimat 85.1 0.39 1.3E-05 45.9 2.5 20 75-94 46-65 (250)
275 1e4v_A Adenylate kinase; trans 85.0 0.39 1.3E-05 44.4 2.5 17 79-95 2-18 (214)
276 2pt5_A Shikimate kinase, SK; a 84.9 0.42 1.4E-05 42.0 2.5 16 79-94 2-17 (168)
277 4tmk_A Protein (thymidylate ki 84.8 0.89 3.1E-05 42.2 4.8 36 75-110 1-42 (213)
278 1u94_A RECA protein, recombina 84.7 0.83 2.8E-05 46.1 4.9 33 76-108 62-98 (356)
279 2pbr_A DTMP kinase, thymidylat 84.6 0.44 1.5E-05 42.9 2.6 16 79-94 2-17 (195)
280 4e22_A Cytidylate kinase; P-lo 84.6 0.46 1.6E-05 45.3 2.8 19 76-94 26-44 (252)
281 3hws_A ATP-dependent CLP prote 84.5 0.43 1.5E-05 48.2 2.7 19 76-94 50-68 (363)
282 2chg_A Replication factor C sm 84.5 0.46 1.6E-05 43.4 2.7 17 78-94 39-55 (226)
283 1ye8_A Protein THEP1, hypothet 84.5 0.46 1.6E-05 42.8 2.6 16 79-94 2-17 (178)
284 1ofh_A ATP-dependent HSL prote 84.4 0.45 1.5E-05 46.4 2.7 19 76-94 49-67 (310)
285 3kta_A Chromosome segregation 84.3 0.63 2.2E-05 41.6 3.4 23 77-99 26-50 (182)
286 1rj9_A FTSY, signal recognitio 84.2 0.91 3.1E-05 44.7 4.8 32 76-107 101-136 (304)
287 2if2_A Dephospho-COA kinase; a 84.2 0.46 1.6E-05 43.3 2.5 16 79-94 3-18 (204)
288 3a4m_A L-seryl-tRNA(SEC) kinas 84.1 0.49 1.7E-05 45.3 2.8 18 77-94 4-21 (260)
289 1nlf_A Regulatory protein REPA 84.1 0.61 2.1E-05 45.1 3.5 24 75-98 28-51 (279)
290 2cbz_A Multidrug resistance-as 83.9 0.53 1.8E-05 44.6 2.9 63 248-315 132-201 (237)
291 3io5_A Recombination and repai 83.9 0.42 1.4E-05 47.3 2.2 76 79-170 30-124 (333)
292 1vht_A Dephospho-COA kinase; s 83.7 0.54 1.8E-05 43.5 2.8 18 77-94 4-21 (218)
293 2z0h_A DTMP kinase, thymidylat 83.7 0.47 1.6E-05 42.9 2.4 16 79-94 2-17 (197)
294 2xb4_A Adenylate kinase; ATP-b 83.7 0.49 1.7E-05 44.1 2.5 16 79-94 2-17 (223)
295 1tue_A Replication protein E1; 83.7 0.58 2E-05 43.2 2.9 20 77-96 58-77 (212)
296 1ixz_A ATP-dependent metallopr 83.6 0.52 1.8E-05 44.7 2.7 17 78-94 50-66 (254)
297 1jjv_A Dephospho-COA kinase; P 83.6 0.51 1.7E-05 43.2 2.5 17 78-94 3-19 (206)
298 3bh0_A DNAB-like replicative h 83.6 1.7 5.9E-05 42.8 6.6 46 76-122 67-116 (315)
299 3gfo_A Cobalt import ATP-bindi 83.6 0.55 1.9E-05 45.6 2.8 65 248-315 148-217 (275)
300 1htw_A HI0065; nucleotide-bind 83.5 0.58 2E-05 41.2 2.8 19 76-94 32-50 (158)
301 1nij_A Hypothetical protein YJ 83.4 0.63 2.1E-05 46.1 3.3 33 78-110 5-39 (318)
302 2p5t_B PEZT; postsegregational 83.3 0.41 1.4E-05 45.7 1.8 19 76-94 31-49 (253)
303 3uk6_A RUVB-like 2; hexameric 83.2 0.52 1.8E-05 47.4 2.7 18 77-94 70-87 (368)
304 1sq5_A Pantothenate kinase; P- 83.2 1.1 3.8E-05 44.1 5.0 25 76-100 79-105 (308)
305 1gtv_A TMK, thymidylate kinase 83.1 0.33 1.1E-05 44.6 1.1 16 79-94 2-17 (214)
306 3tqc_A Pantothenate kinase; bi 83.0 1.1 3.7E-05 44.5 4.8 22 79-100 94-117 (321)
307 3t15_A Ribulose bisphosphate c 82.9 0.59 2E-05 45.7 2.8 18 77-94 36-53 (293)
308 2vp4_A Deoxynucleoside kinase; 82.9 0.6 2.1E-05 43.7 2.8 19 76-94 19-37 (230)
309 2pcj_A ABC transporter, lipopr 82.9 0.61 2.1E-05 43.7 2.8 19 76-94 29-47 (224)
310 3nh6_A ATP-binding cassette SU 82.9 0.5 1.7E-05 46.6 2.3 64 248-316 195-262 (306)
311 4eaq_A DTMP kinase, thymidylat 82.8 0.62 2.1E-05 43.8 2.8 19 76-94 25-43 (229)
312 2og2_A Putative signal recogni 82.6 1.2 4E-05 45.0 4.9 40 76-115 156-201 (359)
313 1mv5_A LMRA, multidrug resista 82.5 0.62 2.1E-05 44.2 2.7 19 76-94 27-45 (243)
314 2ff7_A Alpha-hemolysin translo 82.5 0.64 2.2E-05 44.3 2.9 63 248-315 150-216 (247)
315 3aez_A Pantothenate kinase; tr 82.5 0.62 2.1E-05 46.1 2.8 25 75-99 88-114 (312)
316 1xp8_A RECA protein, recombina 82.5 1.1 3.9E-05 45.2 4.8 32 76-107 73-108 (366)
317 2jeo_A Uridine-cytidine kinase 82.4 0.63 2.1E-05 44.1 2.8 19 76-94 24-42 (245)
318 1njg_A DNA polymerase III subu 82.4 0.63 2.2E-05 43.0 2.8 17 78-94 46-62 (250)
319 4fcw_A Chaperone protein CLPB; 82.4 0.6 2.1E-05 45.7 2.7 18 77-94 47-64 (311)
320 2pze_A Cystic fibrosis transme 82.4 0.66 2.3E-05 43.6 2.8 63 248-315 135-202 (229)
321 1sgw_A Putative ABC transporte 82.4 0.62 2.1E-05 43.3 2.6 19 76-94 34-52 (214)
322 2i3b_A HCR-ntpase, human cance 82.3 0.62 2.1E-05 42.4 2.5 18 77-94 1-18 (189)
323 2ghi_A Transport protein; mult 82.2 0.66 2.3E-05 44.5 2.9 63 248-315 160-226 (260)
324 3tqf_A HPR(Ser) kinase; transf 82.2 1.1 3.8E-05 40.1 4.1 26 75-100 14-39 (181)
325 4g1u_C Hemin import ATP-bindin 82.2 0.66 2.3E-05 44.7 2.9 66 248-314 146-220 (266)
326 1um8_A ATP-dependent CLP prote 82.2 0.6 2E-05 47.3 2.7 19 76-94 71-89 (376)
327 1odf_A YGR205W, hypothetical 3 82.1 0.65 2.2E-05 45.4 2.7 19 76-94 30-48 (290)
328 2r2a_A Uncharacterized protein 82.1 0.79 2.7E-05 42.1 3.2 20 79-98 7-26 (199)
329 1g6h_A High-affinity branched- 82.0 0.68 2.3E-05 44.3 2.9 63 248-314 158-225 (257)
330 1b0u_A Histidine permease; ABC 81.9 0.69 2.4E-05 44.5 2.8 51 248-301 158-213 (262)
331 1cr0_A DNA primase/helicase; R 81.9 0.83 2.8E-05 44.5 3.5 32 76-107 34-70 (296)
332 1ji0_A ABC transporter; ATP bi 81.8 0.71 2.4E-05 43.7 2.9 19 76-94 31-49 (240)
333 1in4_A RUVB, holliday junction 81.8 0.59 2E-05 46.6 2.4 17 78-94 52-68 (334)
334 2grj_A Dephospho-COA kinase; T 81.6 0.63 2.1E-05 42.5 2.3 42 76-119 11-52 (192)
335 3lv8_A DTMP kinase, thymidylat 81.5 0.75 2.6E-05 43.5 2.9 20 75-94 25-44 (236)
336 1ojl_A Transcriptional regulat 81.5 0.67 2.3E-05 45.6 2.6 19 76-94 24-42 (304)
337 2f1r_A Molybdopterin-guanine d 81.3 0.6 2E-05 41.8 2.0 17 78-94 3-19 (171)
338 4hlc_A DTMP kinase, thymidylat 81.2 1.9 6.4E-05 39.7 5.4 34 77-110 2-39 (205)
339 2d2e_A SUFC protein; ABC-ATPas 81.2 0.77 2.6E-05 43.8 2.9 66 248-315 148-217 (250)
340 1vpl_A ABC transporter, ATP-bi 81.0 0.78 2.7E-05 43.9 2.8 19 76-94 40-58 (256)
341 3b85_A Phosphate starvation-in 80.9 0.62 2.1E-05 43.1 2.0 25 68-94 15-39 (208)
342 2zu0_C Probable ATP-dependent 80.9 0.79 2.7E-05 44.2 2.8 66 248-315 169-238 (267)
343 2olj_A Amino acid ABC transpor 80.8 0.8 2.7E-05 44.1 2.8 64 248-315 164-232 (263)
344 1iy2_A ATP-dependent metallopr 80.8 0.76 2.6E-05 44.3 2.7 17 78-94 74-90 (278)
345 1gm5_A RECG; helicase, replica 80.8 4.7 0.00016 45.0 9.4 79 240-320 418-502 (780)
346 2ixe_A Antigen peptide transpo 80.7 0.81 2.8E-05 44.2 2.9 64 248-315 161-229 (271)
347 3qks_A DNA double-strand break 80.6 1.1 3.7E-05 41.2 3.6 26 76-101 22-49 (203)
348 1zu4_A FTSY; GTPase, signal re 80.6 1.6 5.4E-05 43.3 5.0 39 76-114 104-148 (320)
349 3vfd_A Spastin; ATPase, microt 80.4 1.5 5.1E-05 44.6 4.9 20 77-96 148-167 (389)
350 4b4t_M 26S protease regulatory 80.3 1.2 4E-05 46.2 4.0 18 77-94 215-232 (434)
351 2qi9_C Vitamin B12 import ATP- 80.3 0.86 2.9E-05 43.5 2.8 19 76-94 25-43 (249)
352 2nq2_C Hypothetical ABC transp 80.3 0.84 2.9E-05 43.6 2.8 19 76-94 30-48 (253)
353 2yz2_A Putative ABC transporte 80.2 0.85 2.9E-05 43.9 2.9 63 249-315 144-211 (266)
354 1ltq_A Polynucleotide kinase; 80.2 0.79 2.7E-05 44.7 2.6 19 78-96 3-21 (301)
355 2ihy_A ABC transporter, ATP-bi 80.1 0.86 3E-05 44.2 2.8 19 76-94 46-64 (279)
356 2vhj_A Ntpase P4, P4; non- hyd 79.8 1 3.5E-05 44.6 3.3 24 76-99 122-145 (331)
357 1xjc_A MOBB protein homolog; s 79.8 1.1 3.9E-05 39.9 3.3 17 78-94 5-21 (169)
358 3r20_A Cytidylate kinase; stru 79.7 0.91 3.1E-05 42.8 2.7 20 76-95 8-27 (233)
359 2r44_A Uncharacterized protein 79.6 0.69 2.3E-05 45.9 2.0 19 76-94 45-63 (331)
360 4a1f_A DNAB helicase, replicat 79.6 1.5 5.1E-05 43.8 4.5 32 76-107 45-80 (338)
361 2r62_A Cell division protease 79.5 0.41 1.4E-05 45.8 0.3 18 77-94 44-61 (268)
362 2c9o_A RUVB-like 1; hexameric 79.5 0.84 2.9E-05 47.7 2.7 18 77-94 63-80 (456)
363 2x8a_A Nuclear valosin-contain 79.4 0.91 3.1E-05 43.9 2.8 17 78-94 45-61 (274)
364 3ake_A Cytidylate kinase; CMP 79.4 0.97 3.3E-05 41.1 2.8 16 79-94 4-19 (208)
365 4b4t_I 26S protease regulatory 79.2 0.76 2.6E-05 47.3 2.2 18 77-94 216-233 (437)
366 3qf7_A RAD50; ABC-ATPase, ATPa 79.2 0.9 3.1E-05 46.0 2.7 18 77-94 23-40 (365)
367 2h92_A Cytidylate kinase; ross 79.1 0.9 3.1E-05 41.9 2.5 20 76-95 2-21 (219)
368 3auy_A DNA double-strand break 79.0 1.2 4E-05 45.2 3.5 22 76-97 24-47 (371)
369 3v9p_A DTMP kinase, thymidylat 78.9 0.85 2.9E-05 42.8 2.3 20 75-94 23-42 (227)
370 2yhs_A FTSY, cell division pro 78.3 1.9 6.6E-05 45.2 5.0 32 76-107 292-327 (503)
371 3tmk_A Thymidylate kinase; pho 78.3 1.1 3.7E-05 41.7 2.8 19 76-94 4-22 (216)
372 1uj2_A Uridine-cytidine kinase 78.1 1.1 3.7E-05 42.6 2.8 18 77-94 22-39 (252)
373 1p5z_B DCK, deoxycytidine kina 78.1 1.1 3.7E-05 42.9 2.8 19 76-94 23-41 (263)
374 4b4t_K 26S protease regulatory 78.0 1.5 5.1E-05 45.3 4.0 18 77-94 206-223 (428)
375 2bbs_A Cystic fibrosis transme 78.0 1.1 3.7E-05 43.8 2.8 63 248-315 164-231 (290)
376 2f6r_A COA synthase, bifunctio 78.0 1.1 3.6E-05 43.6 2.7 18 77-94 75-92 (281)
377 4b4t_L 26S protease subunit RP 77.9 1.5 5.2E-05 45.3 4.0 18 77-94 215-232 (437)
378 3lda_A DNA repair protein RAD5 77.8 2 6.7E-05 44.0 4.8 23 76-98 177-199 (400)
379 3pvs_A Replication-associated 77.7 1 3.4E-05 47.0 2.6 18 78-95 51-68 (447)
380 4b4t_J 26S protease regulatory 77.7 1.5 5E-05 44.9 3.8 18 77-94 182-199 (405)
381 3nbx_X ATPase RAVA; AAA+ ATPas 77.7 1 3.5E-05 47.6 2.7 41 490-530 447-488 (500)
382 1ls1_A Signal recognition part 77.4 4.5 0.00015 39.4 7.1 87 76-169 97-192 (295)
383 2ffh_A Protein (FFH); SRP54, s 77.4 3.3 0.00011 42.6 6.4 53 76-128 97-156 (425)
384 2ocp_A DGK, deoxyguanosine kin 77.0 1.2 4.1E-05 41.9 2.7 18 77-94 2-19 (241)
385 1np6_A Molybdopterin-guanine d 77.0 1.5 5.2E-05 39.2 3.3 18 77-94 6-23 (174)
386 1j8m_F SRP54, signal recogniti 77.0 2.3 8E-05 41.5 4.9 86 77-169 98-192 (297)
387 3bs4_A Uncharacterized protein 77.0 1.4 4.9E-05 42.1 3.3 52 76-128 20-75 (260)
388 3m6a_A ATP-dependent protease 76.8 1.1 3.9E-05 47.9 2.8 19 76-94 107-125 (543)
389 2qen_A Walker-type ATPase; unk 76.4 2.3 7.8E-05 41.9 4.8 30 77-107 31-60 (350)
390 1g8p_A Magnesium-chelatase 38 76.4 0.66 2.3E-05 46.2 0.8 18 77-94 45-62 (350)
391 1q3t_A Cytidylate kinase; nucl 76.4 1.4 4.6E-05 41.4 2.9 20 75-94 14-33 (236)
392 2pjz_A Hypothetical protein ST 76.4 1.2 4.3E-05 42.7 2.7 62 248-314 133-198 (263)
393 3pxg_A Negative regulator of g 76.2 1.3 4.3E-05 46.5 2.9 20 75-94 199-218 (468)
394 2onk_A Molybdate/tungstate ABC 76.2 1.3 4.4E-05 42.0 2.7 52 248-301 131-187 (240)
395 3hjh_A Transcription-repair-co 76.2 3.9 0.00013 42.9 6.7 57 76-132 13-71 (483)
396 1g41_A Heat shock protein HSLU 76.1 1.2 4.2E-05 46.1 2.7 18 77-94 50-67 (444)
397 2q6t_A DNAB replication FORK h 76.1 4.6 0.00016 41.8 7.2 32 76-107 199-235 (444)
398 3hu3_A Transitional endoplasmi 76.0 2.9 0.0001 44.0 5.7 31 76-106 237-267 (489)
399 3fvq_A Fe(3+) IONS import ATP- 75.9 1.3 4.5E-05 44.6 2.8 19 76-94 29-47 (359)
400 1svm_A Large T antigen; AAA+ f 75.8 1.3 4.6E-05 44.9 2.9 19 76-94 168-186 (377)
401 1pui_A ENGB, probable GTP-bind 75.6 1.4 4.7E-05 40.1 2.7 19 76-94 25-43 (210)
402 3hgt_A HDA1 complex subunit 3; 75.2 13 0.00045 36.6 9.7 103 241-359 127-237 (328)
403 3oiy_A Reverse gyrase helicase 75.1 5.4 0.00018 40.5 7.4 77 239-317 64-148 (414)
404 1z47_A CYSA, putative ABC-tran 75.0 1.5 5E-05 44.2 2.9 19 76-94 40-58 (355)
405 1g5t_A COB(I)alamin adenosyltr 74.5 3.3 0.00011 37.8 4.8 34 76-109 27-64 (196)
406 3rlf_A Maltose/maltodextrin im 74.5 1.5 5.2E-05 44.5 2.8 19 76-94 28-46 (381)
407 1w36_B RECB, exodeoxyribonucle 74.5 3.3 0.00011 48.8 6.1 48 75-123 15-78 (1180)
408 1tf7_A KAIC; homohexamer, hexa 74.5 2.6 8.8E-05 44.8 4.8 32 76-107 38-74 (525)
409 3hjn_A DTMP kinase, thymidylat 74.4 2.7 9.2E-05 38.3 4.3 32 80-111 3-39 (197)
410 3sop_A Neuronal-specific septi 74.3 1.4 4.8E-05 42.5 2.4 16 79-94 4-19 (270)
411 4b4t_H 26S protease regulatory 74.2 1.9 6.3E-05 44.9 3.4 19 76-94 242-260 (467)
412 3qkt_A DNA double-strand break 74.2 1.5 5.2E-05 43.7 2.7 19 76-94 22-40 (339)
413 2yyz_A Sugar ABC transporter, 74.1 1.6 5.4E-05 44.0 2.9 19 76-94 28-46 (359)
414 3zvl_A Bifunctional polynucleo 74.0 1.5 5.3E-05 45.1 2.8 21 76-96 257-277 (416)
415 1sxj_C Activator 1 40 kDa subu 73.9 1.5 5E-05 43.7 2.6 15 80-94 49-63 (340)
416 2it1_A 362AA long hypothetical 73.9 1.6 5.5E-05 44.0 2.8 19 76-94 28-46 (362)
417 1sxj_E Activator 1 40 kDa subu 73.8 1.5 5.2E-05 43.6 2.7 16 79-94 38-53 (354)
418 1knx_A Probable HPR(Ser) kinas 73.7 2.8 9.6E-05 41.2 4.5 24 76-99 146-169 (312)
419 1a7j_A Phosphoribulokinase; tr 73.6 0.9 3.1E-05 44.4 0.9 18 77-94 5-22 (290)
420 3gd7_A Fusion complex of cysti 73.6 1.6 5.5E-05 44.5 2.8 19 76-94 46-64 (390)
421 2xxa_A Signal recognition part 73.5 3.9 0.00013 42.2 5.8 52 77-128 100-159 (433)
422 1sxj_D Activator 1 41 kDa subu 73.5 1.6 5.3E-05 43.4 2.7 17 78-94 59-75 (353)
423 3d31_A Sulfate/molybdate ABC t 73.3 1.4 4.9E-05 44.1 2.3 19 76-94 25-43 (348)
424 3ld9_A DTMP kinase, thymidylat 73.1 1.8 6.2E-05 40.4 2.8 20 75-94 19-38 (223)
425 1iqp_A RFCS; clamp loader, ext 72.9 2.1 7.1E-05 41.8 3.4 17 78-94 47-63 (327)
426 1q57_A DNA primase/helicase; d 72.9 4.8 0.00016 42.4 6.4 45 76-121 241-290 (503)
427 1g29_1 MALK, maltose transport 72.8 1.8 6E-05 43.9 2.9 19 76-94 28-46 (372)
428 2ce7_A Cell division protein F 72.8 1.7 5.7E-05 45.6 2.7 18 77-94 49-66 (476)
429 4a82_A Cystic fibrosis transme 72.7 1.7 5.7E-05 46.9 2.9 64 248-316 482-549 (578)
430 1v43_A Sugar-binding transport 72.5 1.8 6.2E-05 43.8 2.8 19 76-94 36-54 (372)
431 3tui_C Methionine import ATP-b 72.4 1.8 6.3E-05 43.6 2.8 19 76-94 53-71 (366)
432 2r6a_A DNAB helicase, replicat 72.2 2.3 7.8E-05 44.3 3.7 32 76-107 202-238 (454)
433 2r8r_A Sensor protein; KDPD, P 71.8 3.9 0.00014 38.1 4.8 19 77-95 6-24 (228)
434 2npi_A Protein CLP1; CLP1-PCF1 71.3 1.8 6.2E-05 45.2 2.6 19 76-94 137-155 (460)
435 2j37_W Signal recognition part 71.2 5.2 0.00018 42.1 6.1 52 77-128 101-159 (504)
436 2jgn_A DBX, DDX3, ATP-dependen 71.1 23 0.00077 31.5 9.7 77 87-163 29-120 (185)
437 2chq_A Replication factor C sm 70.8 2 6.7E-05 41.9 2.6 16 79-94 40-55 (319)
438 3b60_A Lipid A export ATP-bind 70.7 1.9 6.7E-05 46.4 2.8 64 248-316 485-552 (582)
439 3qf4_A ABC transporter, ATP-bi 70.5 2 6.8E-05 46.4 2.8 64 248-316 484-551 (587)
440 3b5x_A Lipid A export ATP-bind 70.4 2 6.8E-05 46.4 2.8 63 248-315 485-551 (582)
441 1oxx_K GLCV, glucose, ABC tran 70.4 1.5 5E-05 44.1 1.6 19 76-94 30-48 (353)
442 3bgw_A DNAB-like replicative h 70.3 3.6 0.00012 42.7 4.6 32 76-107 196-231 (444)
443 3pxi_A Negative regulator of g 70.2 2 7E-05 47.9 2.9 20 75-94 199-218 (758)
444 1lw7_A Transcriptional regulat 70.1 2 6.7E-05 43.3 2.5 18 77-94 170-187 (365)
445 3k1j_A LON protease, ATP-depen 69.9 2 6.7E-05 46.6 2.6 19 76-94 59-77 (604)
446 2dyk_A GTP-binding protein; GT 69.6 2.9 9.8E-05 35.7 3.2 21 78-98 2-22 (161)
447 2rb4_A ATP-dependent RNA helic 69.3 13 0.00045 32.5 7.7 83 81-163 12-108 (175)
448 3fdi_A Uncharacterized protein 69.2 2.4 8.3E-05 38.7 2.7 22 75-96 4-25 (201)
449 3qf4_B Uncharacterized ABC tra 69.0 1.8 6.3E-05 46.8 2.1 64 248-316 496-563 (598)
450 2ce2_X GTPase HRAS; signaling 68.6 2.9 9.8E-05 35.7 3.0 21 78-98 4-24 (166)
451 1fuk_A Eukaryotic initiation f 68.6 21 0.00073 30.7 8.9 76 89-164 16-105 (165)
452 2ius_A DNA translocase FTSK; n 68.5 2.6 8.8E-05 44.6 3.0 18 77-94 167-184 (512)
453 2dhr_A FTSH; AAA+ protein, hex 68.3 2.4 8E-05 44.8 2.7 17 78-94 65-81 (499)
454 1u0j_A DNA replication protein 68.2 2.7 9.3E-05 40.3 2.9 18 78-95 105-122 (267)
455 2wji_A Ferrous iron transport 67.7 3.1 0.00011 36.1 3.0 21 77-97 3-23 (165)
456 3cr8_A Sulfate adenylyltranfer 67.6 2.1 7.2E-05 45.8 2.2 19 76-94 368-386 (552)
457 1ypw_A Transitional endoplasmi 67.2 4.8 0.00017 45.2 5.1 20 76-95 237-256 (806)
458 1sxj_B Activator 1 37 kDa subu 67.1 3 0.0001 40.5 3.1 16 79-94 44-59 (323)
459 2f9l_A RAB11B, member RAS onco 66.6 2.8 9.4E-05 37.8 2.5 18 79-96 7-24 (199)
460 1e69_A Chromosome segregation 66.6 2.2 7.4E-05 42.2 1.9 53 248-301 224-282 (322)
461 2yl4_A ATP-binding cassette SU 66.3 2.1 7.3E-05 46.2 1.9 63 248-315 488-554 (595)
462 1oix_A RAS-related protein RAB 66.2 2.8 9.6E-05 37.6 2.5 18 79-96 31-48 (191)
463 1r6b_X CLPA protein; AAA+, N-t 66.0 2.7 9.3E-05 46.8 2.8 19 76-94 206-224 (758)
464 2qm8_A GTPase/ATPase; G protei 65.9 2.9 0.0001 41.6 2.8 19 76-94 54-72 (337)
465 1z0j_A RAB-22, RAS-related pro 65.8 3 0.0001 35.9 2.5 20 78-97 7-26 (170)
466 1z2a_A RAS-related protein RAB 65.8 3.8 0.00013 35.1 3.2 21 78-98 6-26 (168)
467 1w1w_A Structural maintenance 65.7 3.6 0.00012 42.4 3.5 23 77-99 26-50 (430)
468 1kao_A RAP2A; GTP-binding prot 65.6 3.6 0.00012 35.1 3.0 20 77-96 3-22 (167)
469 2ged_A SR-beta, signal recogni 65.4 3.8 0.00013 36.4 3.2 23 77-99 48-70 (193)
470 1ko7_A HPR kinase/phosphatase; 65.4 4.8 0.00016 39.6 4.1 25 76-100 143-167 (314)
471 1ek0_A Protein (GTP-binding pr 65.0 4.6 0.00016 34.6 3.6 20 78-97 4-23 (170)
472 2wsm_A Hydrogenase expression/ 64.9 3.8 0.00013 37.5 3.1 22 76-97 29-50 (221)
473 2hjv_A ATP-dependent RNA helic 64.9 23 0.00079 30.5 8.3 77 87-163 19-109 (163)
474 1ky3_A GTP-binding protein YPT 64.5 4.1 0.00014 35.5 3.2 21 78-98 9-29 (182)
475 3eaq_A Heat resistant RNA depe 64.5 17 0.0006 33.0 7.7 78 86-163 14-105 (212)
476 2yv5_A YJEQ protein; hydrolase 64.5 4.2 0.00014 39.8 3.5 20 75-94 163-182 (302)
477 2gj8_A MNME, tRNA modification 64.5 3.4 0.00011 36.3 2.6 20 77-96 4-23 (172)
478 1u8z_A RAS-related protein RAL 64.3 4 0.00014 34.9 3.0 22 77-98 4-25 (168)
479 1nrj_B SR-beta, signal recogni 64.3 4.6 0.00016 36.7 3.6 22 77-98 12-33 (218)
480 1g16_A RAS-related protein SEC 63.8 4.3 0.00015 34.9 3.2 20 79-98 5-24 (170)
481 4akg_A Glutathione S-transfera 63.4 3.8 0.00013 51.9 3.6 26 76-101 1266-1291(2695)
482 2qag_B Septin-6, protein NEDD5 63.4 3.1 0.00011 42.9 2.4 19 76-94 39-59 (427)
483 1bg2_A Kinesin; motor protein, 63.3 4 0.00014 40.4 3.1 20 76-95 77-96 (325)
484 3f9v_A Minichromosome maintena 63.2 3.2 0.00011 44.9 2.6 16 79-94 329-344 (595)
485 1t9h_A YLOQ, probable GTPase E 63.1 2.5 8.7E-05 41.5 1.6 20 75-94 171-190 (307)
486 2wjg_A FEOB, ferrous iron tran 63.0 4.2 0.00014 35.8 3.0 22 76-97 6-27 (188)
487 3ozx_A RNAse L inhibitor; ATP 62.9 4.1 0.00014 43.4 3.3 20 75-94 23-42 (538)
488 2lkc_A Translation initiation 62.9 5.2 0.00018 34.8 3.6 23 76-98 7-29 (178)
489 3nwn_A Kinesin-like protein KI 62.8 4 0.00014 41.0 3.0 19 76-94 104-122 (359)
490 3pqc_A Probable GTP-binding pr 62.8 5 0.00017 35.4 3.5 21 77-97 23-43 (195)
491 1svi_A GTP-binding protein YSX 62.3 5.2 0.00018 35.5 3.5 21 77-97 23-43 (195)
492 2p6n_A ATP-dependent RNA helic 62.3 18 0.00063 32.3 7.3 77 87-163 39-128 (191)
493 2rcn_A Probable GTPase ENGC; Y 62.2 3.9 0.00013 41.1 2.8 20 75-94 213-232 (358)
494 2erx_A GTP-binding protein DI- 62.2 4.9 0.00017 34.5 3.2 20 78-97 4-23 (172)
495 3dc4_A Kinesin-like protein NO 62.1 4.3 0.00015 40.5 3.1 19 76-94 94-112 (344)
496 1yrb_A ATP(GTP)binding protein 62.1 7.5 0.00026 36.5 4.8 21 76-96 13-33 (262)
497 1wms_A RAB-9, RAB9, RAS-relate 62.1 5.5 0.00019 34.5 3.6 21 78-98 8-28 (177)
498 3q85_A GTP-binding protein REM 62.1 3.9 0.00013 35.2 2.5 18 79-96 4-21 (169)
499 3lxx_A GTPase IMAP family memb 62.1 3.7 0.00013 38.3 2.5 20 77-96 29-48 (239)
500 3tw8_B RAS-related protein RAB 62.0 3.9 0.00013 35.6 2.5 19 78-96 10-28 (181)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=8.2e-71 Score=608.94 Aligned_cols=484 Identities=43% Similarity=0.765 Sum_probs=442.6
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccc
Q 008489 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (564)
Q Consensus 58 ~~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~ 137 (564)
.+.+++.+++|+|.++.+++++++++||||||||+.+++.+...++++|++|+|+||.|+++++++.|++|++++|+...
T Consensus 136 ~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~ 215 (677)
T 3rc3_A 136 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV 215 (677)
T ss_dssp HHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE
T ss_pred HHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccC----CCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHHHHHHcCCce
Q 008489 138 EVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (564)
Q Consensus 138 ~~~----~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~ 213 (564)
... ...++++|+++++....++++||||+|++.+.++|+.|...+.++.+..+++++.+++.+.+..+....+..+
T Consensus 216 iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~ 295 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV 295 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE
T ss_pred EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce
Confidence 543 3679999999999999999999999999999889999999999999888999999999999999999899999
Q ss_pred EEEeecccCCCCCCCccccccccccCCCeEEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee
Q 008489 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (564)
Q Consensus 214 ~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ 293 (564)
.+..+.+..++......+..+.+..+|++|||+++++++.+++.|++.+. .+.++||+|++++|..+++.|++++|.++
T Consensus 296 ~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~-~v~~lHG~L~~~~R~~~~~~F~~~~g~~~ 374 (677)
T 3rc3_A 296 EVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL-ESAVIYGSLPPGTKLAQAKKFNDPNDPCK 374 (677)
T ss_dssp EEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHCTTSSCC
T ss_pred EEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC-CeeeeeccCCHHHHHHHHHHHHccCCCeE
Confidence 99888888887777666666777788898888899999999999998765 89999999999999999999998778899
Q ss_pred EEEeccccccccccCccEEEecCccccC----C-ccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhC
Q 008489 294 VLVASDAIGMGLNLNISRIIFSTMKKFD----G-VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368 (564)
Q Consensus 294 VlVaT~~~~~Gldipv~~VI~~~~~k~~----~-~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~~~~ 368 (564)
|||||+++++|||++|++||+++..+|+ | .+.+|+|.++|.||+|||||.|..+..|.|+.+++++...+++++.
T Consensus 375 VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 375 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILK 454 (677)
T ss_dssp EEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHH
T ss_pred EEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHh
Confidence 9999999999999999999999998863 2 2467999999999999999999654559999999998889999999
Q ss_pred CCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCC
Q 008489 369 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448 (564)
Q Consensus 369 ~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~ 448 (564)
...++|.++++.|..++++.|+...|+..+.++++.+......+..|++++++++..+++++++.+|+..+++.|+.+|+
T Consensus 455 ~~~~~i~~~~l~p~~~~l~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP~ 534 (677)
T 3rc3_A 455 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPI 534 (677)
T ss_dssp SCCCCCCCEEECCCHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSCC
T ss_pred cCcchhhhccCCChHHHHHHHhccCCcchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCccchhhhc--cCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHH
Q 008489 449 DMNDDISSQGLTQFATNYSKKGIVQLREIF--TPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQK 526 (564)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~le~~~~~~~~y~wl~~r~~~~f~~~~~~~~~~ 526 (564)
+..+|..+.+|..|++.++.++.+++..+. ...|...+.+..+|.+||.+|+++++|+|||+|||++|+|.+.|+++|
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~ 614 (677)
T 3rc3_A 535 NKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ 614 (677)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCTTTSTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHH
Confidence 999999999999999999999999987554 244566778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 008489 527 AICSMLIEEFLERLGW 542 (564)
Q Consensus 527 ~~~~~~i~~~l~~~~~ 542 (564)
..|+.+|++.|.+++.
T Consensus 615 ~~~~~~i~~~~~~~~~ 630 (677)
T 3rc3_A 615 KELDGIIQDGVHNITK 630 (677)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998653
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.1e-47 Score=430.73 Aligned_cols=464 Identities=16% Similarity=0.172 Sum_probs=333.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li~~P~r~ 112 (564)
+++.+.+.++.. + ..|+.+|+ .++.+.. .+++++++||||||||++++..+.. ++++++++|+|+
T Consensus 79 l~~~~~~~l~~r-----~-~lP~~~q~~~i~~~l~-~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 79 FTPKYVDILKIR-----R-ELPVHAQRDEFLKLYQ-NNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp CCHHHHHHHHHH-----T-TSGGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCHHHHHHHHHh-----h-cCChHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH
Confidence 688888888887 5 67888888 7777643 5789999999999999987666543 335788999999
Q ss_pred HHHHHHHHHHh-cCCeeEEEeCc----cccccCCCceEEEcceecc-------ccCcccEEEEccccccC-CCCCcchHH
Q 008489 113 LAWEVAKRLNK-ANVSCDLITGQ----EREEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLG-CKTRGFSFT 179 (564)
Q Consensus 113 La~q~~~~l~~-~g~~~~~~~G~----~~~~~~~~~~i~~T~e~~~-------~l~~~~~vViDEaH~~~-~~~rg~~~~ 179 (564)
||.|+++++.+ +|..++..+|+ +.....+..++++|++++. .+.++++|||||+|++. +.+....+.
T Consensus 152 La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHH
Confidence 99999999873 45554433332 2333457889999996542 47899999999999743 211011112
Q ss_pred HHHhccCccceEEEccCCCchHHHHHHHHcCC---------ceEEEeecccCCCCCCC-cccccc----ccccCCCeEEE
Q 008489 180 RALLGICANELHLCGDPAAVPLIQQILQVTGD---------DVKVQSYERLSPLVPLN-VPLGSF----SNIQTGDCIVT 245 (564)
Q Consensus 180 ~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~---------~~~v~~~~~~~~~~~~~-~~l~~l----~~~~~g~~iv~ 245 (564)
..+.... ...+++..+++.+ ...+..+.+. .+++..++...+..... ..+..+ ....+|++|||
T Consensus 232 ~~l~~~~-~~~~iIl~SAT~~-~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF 309 (773)
T 2xau_A 232 KQVVKRR-PDLKIIIMSATLD-AEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLF 309 (773)
T ss_dssp HHHHHHC-TTCEEEEEESCSC-CHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHhC-CCceEEEEecccc-HHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2222222 2344555544443 2334444443 23333333222221111 111111 12357889998
Q ss_pred c-cHHHHHHHHHHHHHc----------CCCeEEEEcCCCCHHHHHHHHHHHh-----CCCCCeeEEEeccccccccccC-
Q 008489 246 F-SRHAIYRLKKAIESR----------GKHLCSIVYGSLPPETRTRQATRFN-----DASSEFDVLVASDAIGMGLNLN- 308 (564)
Q Consensus 246 ~-s~~~~~~l~~~L~~~----------~~~~v~~lhg~l~~~~R~~~~~~F~-----~~~g~~~VlVaT~~~~~Gldip- 308 (564)
+ ++++++.+++.|.+. ....+.++||+|++++|..+++.|. + |.++||||||++++|||||
T Consensus 310 ~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~--g~~kVlVAT~iae~GidIp~ 387 (773)
T 2xau_A 310 LTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR--PGRKVVISTNIAETSLTIDG 387 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS--CCEEEEEECTHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC--CceEEEEeCcHHHhCcCcCC
Confidence 8 899999999999751 3447999999999999999999998 6 9999999999999999998
Q ss_pred ccEEEecCccc---cCCc------cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH-HhhhCCCChhhhhcC
Q 008489 309 ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL-HKSLLEPSPMLESAG 378 (564)
Q Consensus 309 v~~VI~~~~~k---~~~~------~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~-~~~~~~~~~ei~~~~ 378 (564)
|++||+++..+ ||+. ...|+|.++|.||+|||||.++ |.||++++++ .+ ..+.+...|||.+.+
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~----G~~~~l~~~~--~~~~~l~~~~~pEi~r~~ 461 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP----GKCFRLYTEE--AFQKELIEQSYPEILRSN 461 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS----EEEEESSCHH--HHHHTSCSSCCCGGGGSC
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC----CEEEEEecHH--HhcccccccCCCccccCc
Confidence 99999998855 7664 2458999999999999999965 9999999765 44 568889999999999
Q ss_pred CCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHH
Q 008489 379 LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 458 (564)
Q Consensus 379 l~~~~~~l~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~ 458 (564)
+...+++++.++ +.++.. |.++++|+...+..+++.|..++++++++.+|..|+.+..+ | .+|.++++
T Consensus 462 L~~~~L~l~~~g-------i~~~~~-f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~-p---l~p~~~~~ 529 (773)
T 2xau_A 462 LSSTVLELKKLG-------IDDLVH-FDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQF-P---LDPMLAVM 529 (773)
T ss_dssp CHHHHHHHHHTT-------CCCGGG-CCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTS-S---SCHHHHHH
T ss_pred HHHHHHHHHHcC-------CCChhh-ccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccc-c---CCHHHHHH
Confidence 999999999843 333443 77888898888899999999999999888999999999998 9 79999999
Q ss_pred HHHHHHHHhhcCccchhhhcc-CCCCCCCCcHHHHHHH--------HHHH-HHHHH--------------HHHhhhhcCC
Q 008489 459 LTQFATNYSKKGIVQLREIFT-PGTLQVPKTQAALREL--------ESIH-KVLDL--------------YVWLSFRLEE 514 (564)
Q Consensus 459 l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~l--------e~~~-~~~~~--------------y~wl~~r~~~ 514 (564)
|+..+.+.|..++++|++++. +++|..|.......+. ++.| ..+.+ ..||..+| .
T Consensus 530 l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~-l 608 (773)
T 2xau_A 530 LIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHY-L 608 (773)
T ss_dssp HHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTT-B
T ss_pred HHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhC-C
Confidence 999999999999999998884 5667666543221110 1111 22222 34666555 4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 008489 515 SFPDRELAASQKAICSMLIE 534 (564)
Q Consensus 515 ~f~~~~~~~~~~~~~~~~i~ 534 (564)
.+..+..+.++|.++.+++.
T Consensus 609 ~~~~l~~~~~~~~ql~~~~~ 628 (773)
T 2xau_A 609 NYRSLSAADNIRSQLERLMN 628 (773)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777766654
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.5e-43 Score=394.94 Aligned_cols=421 Identities=19% Similarity=0.181 Sum_probs=297.9
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEc
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCG 108 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~ 108 (564)
+.++. +++.+.+.++.. |+..|+++|. +++.+. .++++++++||||||||++++.+++ .+++++|++
T Consensus 10 ~~~l~-l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~-~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 10 IEDLK-LPSNVIEIIKKR-----GIKKLNPPQTEAVKKGL-LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp GGGSS-SCHHHHHHHHTT-----SCCBCCHHHHHHHHTTT-TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred HHHcC-CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHh-cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34443 799999999988 9999999999 888722 4689999999999999999866654 467899999
Q ss_pred cHHHHHHHHHHHHHh---cCCeeEEEeCcccccc---CCCceEEEcceecc--------ccCcccEEEEccccccCCCCC
Q 008489 109 PLRLLAWEVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (564)
Q Consensus 109 P~r~La~q~~~~l~~---~g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~r 174 (564)
|+|+||.|++++++. +|++++..+|+..... .++.++++|++++. .+.++++|||||+|++.+..+
T Consensus 83 P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~ 162 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPER 162 (715)
T ss_dssp SCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTT
T ss_pred CcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCccc
Confidence 999999999999853 5899999999765543 26889999997663 368999999999999988778
Q ss_pred cchHHHHHhccCccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCC----------------C----------C
Q 008489 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------------L----------N 228 (564)
Q Consensus 175 g~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~----------------~----------~ 228 (564)
|..+..++..+. ..++++.+++.+....+..+.+... +....++.|+.. . .
T Consensus 163 ~~~l~~i~~~~~--~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (715)
T 2va8_A 163 GPVVESVTIRAK--RRNLLALSATISNYKQIAKWLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDD 239 (715)
T ss_dssp HHHHHHHHHHHH--TSEEEEEESCCTTHHHHHHHHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred chHHHHHHHhcc--cCcEEEEcCCCCCHHHHHHHhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccch
Confidence 877666554443 6778888888887788888776432 111112222110 0 0
Q ss_pred cccccccc--ccCCCeEEEc-cHHHHHHHHHHHHHcCC-----------------------------------CeEEEEc
Q 008489 229 VPLGSFSN--IQTGDCIVTF-SRHAIYRLKKAIESRGK-----------------------------------HLCSIVY 270 (564)
Q Consensus 229 ~~l~~l~~--~~~g~~iv~~-s~~~~~~l~~~L~~~~~-----------------------------------~~v~~lh 270 (564)
..+..+.+ ..+++++||+ ++++++.+++.|.+... .++.++|
T Consensus 240 ~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 240 AIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 00111111 1457888888 89999999999976422 2599999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccC---CccccccCHhhHHhhhccCCCCCCC
Q 008489 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD---GVELRDLTVPEVKQIAGRAGRYGSK 346 (564)
Q Consensus 271 g~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~---~~~~~p~s~~~~~Qr~GRaGR~g~~ 346 (564)
|+|++++|..+++.|++ |.++|||||+++++|||+| +++||+ +...|| +....|.|.++|.||+|||||.|.+
T Consensus 320 ~~l~~~~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPARTVIIG-DIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp TTSCHHHHHHHHHHHHT--TCSCEEEECGGGGGSSCCCBSEEEEC-CC--------------CHHHHHHHHTTBCCTTTC
T ss_pred CCCCHHHHHHHHHHHHc--CCCeEEEEChHHhcccCCCceEEEEe-CCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 99999999999999999 9999999999999999998 666665 355666 3446789999999999999999942
Q ss_pred CCcEEEEEecCCCH---HHHHhhhCCCChhhhhcCCCCc---HHHHHHHHhhCCCCCHHHHHHHHH--Hhc-ccCCCccc
Q 008489 347 FPVGEVTCLDSEDL---PLLHKSLLEPSPMLESAGLFPN---FDLIYMYSRLHPDSSLYGILEHFL--ENA-KLSENYFF 417 (564)
Q Consensus 347 ~~~G~~~~l~~~~~---~~~~~~~~~~~~ei~~~~l~~~---~~~l~~~~~~~~~~~~~~~l~~f~--~~~-~~~~~~~~ 417 (564)
..|.|+.+++++. ..+++++. ..|++.+..+.+. ..++..........+..++...+. +.. +|+...+.
T Consensus 397 -~~G~~~~l~~~~~~~~~~~~~~l~-~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 474 (715)
T 2va8_A 397 -QIGESIVVVRDKEDVDRVFKKYVL-SDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFD 474 (715)
T ss_dssp -SCEEEEEECSCGGGHHHHHHHTTS-SCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred -CCceEEEEeCCchHHHHHHHHHHc-CCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHH
Confidence 3499999987653 23444554 4456667777662 222322222222234455554211 111 23334466
Q ss_pred cCHHHHHHHHHHhccC---CCCHHHHHHHhccCCCCCCHHHHHHHHHHHHH---HhhcCccch
Q 008489 418 ANCEEVLKVATVIDQL---PLRLHEKYLFCISPVDMNDDISSQGLTQFATN---YSKKGIVQL 474 (564)
Q Consensus 418 ~~~~~l~~l~~~~~~~---~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~---~~~~~~~~i 474 (564)
.+++.|..++++..+. .+|..|+.+..+ | .+|..+++++..... .|..+.+.+
T Consensus 475 ~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (715)
T 2va8_A 475 RAIRWLLEHSFIKEEGNTFALTNFGKRVADL-Y---INPFTADIIRKGLEGHKASCELAYLHL 533 (715)
T ss_dssp HHHHHHHHTTSEEECSSEEEECHHHHHHHHH-T---CCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCcCEeecCCeEeeChHHHHHHHH-c---CCHhHHHHHHHHhhhccCCCHHHHHHH
Confidence 6777888888887653 589999999998 9 789999999988887 455455544
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1e-42 Score=393.29 Aligned_cols=421 Identities=18% Similarity=0.145 Sum_probs=305.4
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchH-HHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPL-ARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLL 113 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~-~~~~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~L 113 (564)
+++.+.+.++.. |+..|+++|. +++. + .++++++++||||||||++++.+++ ++++++|++|+++|
T Consensus 8 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 8 VDERIKSTLKER-----GIESFYPPQAEALKSGI--LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp SCHHHHHHHHHT-----TCCBCCHHHHHHHTTTG--GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 889999999988 9999999999 8887 5 4589999999999999999855543 46789999999999
Q ss_pred HHHHHHHHHh---cCCeeEEEeCcccccc---CCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHH
Q 008489 114 AWEVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFT 179 (564)
Q Consensus 114 a~q~~~~l~~---~g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~ 179 (564)
|.|+++++++ +|++++.++|+..... .++.++++|++++. .+.++++|||||+|++.+.+||..+.
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~ 160 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLE 160 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHH
Confidence 9999999973 5899999999754432 36889999998763 36889999999999999877887766
Q ss_pred HHHhccCccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCC-----------------CCcccccccc--ccCC
Q 008489 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP-----------------LNVPLGSFSN--IQTG 240 (564)
Q Consensus 180 ~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~-----------------~~~~l~~l~~--~~~g 240 (564)
.++-.+.. ..++++.+++.+....+..+.+... +....++.++.. .......+.+ ..++
T Consensus 161 ~ll~~l~~-~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (720)
T 2zj8_A 161 VILAHMLG-KAQIIGLSATIGNPEELAEWLNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKK 238 (720)
T ss_dssp HHHHHHBT-TBEEEEEECCCSCHHHHHHHTTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTC
T ss_pred HHHHHhhc-CCeEEEEcCCcCCHHHHHHHhCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCC
Confidence 55544443 7888888899877788888876421 111111211110 0111111111 1457
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCC--------------------------------CeEEEEcCCCCHHHHHHHHHHHhC
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQATRFND 287 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~lhg~l~~~~R~~~~~~F~~ 287 (564)
+++||+ ++++++.++..|.+... .++.++||+|++++|..+++.|++
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 788888 89999999998875311 249999999999999999999999
Q ss_pred CCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH--HHHH
Q 008489 288 ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLH 364 (564)
Q Consensus 288 ~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~--~~~~ 364 (564)
|.++|||||+++++|||+| +++||+ +..+||+.+..|.|..+|.||+|||||.|.+ ..|.|+.+++++. ..++
T Consensus 319 --g~~~vlvaT~~l~~Gvdip~~~~VI~-~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~ 394 (720)
T 2zj8_A 319 --GIIKAVVATPTLSAGINTPAFRVIIR-DIWRYSDFGMERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTSDDPREVMN 394 (720)
T ss_dssp --TSSCEEEECSTTGGGCCCCBSEEEEC-CSEECCSSSCEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSSSCHHHHHH
T ss_pred --CCCeEEEECcHhhccCCCCceEEEEc-CCeeecCCCCccCCHHHHHHHHhhcCCCCCC-CCceEEEEecCccHHHHHH
Confidence 9999999999999999999 665554 5567775556799999999999999999852 4599999977552 2345
Q ss_pred hhhCCCChhhhhcCCCC---cHHHHHHHHhhCCCCCHHHHHHHH--HHhcccCC------CccccCHHHHHHHHHHh-cc
Q 008489 365 KSLLEPSPMLESAGLFP---NFDLIYMYSRLHPDSSLYGILEHF--LENAKLSE------NYFFANCEEVLKVATVI-DQ 432 (564)
Q Consensus 365 ~~~~~~~~ei~~~~l~~---~~~~l~~~~~~~~~~~~~~~l~~f--~~~~~~~~------~~~~~~~~~l~~l~~~~-~~ 432 (564)
+++....+++... +.+ ...++..........+..++.+.+ .+...+.+ +.+..+++.|...+.+. +.
T Consensus 395 ~~~~~~~~~i~s~-l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~ 473 (720)
T 2zj8_A 395 HYIFGKPEKLFSQ-LSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISL 473 (720)
T ss_dssp HHTTSCCCCCCCC-TTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECT
T ss_pred HHhcCCCCCcEee-cCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECC
Confidence 6776666665533 332 233344433334444555555522 12211111 23455666777777765 43
Q ss_pred C---CCCHHHHHHHhccCCCCCCHHHHHHHHHHHHH----HhhcCccchhhhcc
Q 008489 433 L---PLRLHEKYLFCISPVDMNDDISSQGLTQFATN----YSKKGIVQLREIFT 479 (564)
Q Consensus 433 ~---~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~----~~~~~~~~i~~~~~ 479 (564)
. ..|..|+.+..+ | .+|..+++++..... .|..+.+.+.++..
T Consensus 474 ~~~~~~t~lG~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 523 (720)
T 2zj8_A 474 EDKIRPLSLGIRTAKL-Y---IDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTP 523 (720)
T ss_dssp TSCEEECHHHHHHHHH-T---CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST
T ss_pred CCcEeeChHHHHHHHH-c---CCHHHHHHHHHHHHhhccCCCHHHHHHHhccCc
Confidence 3 489999999988 8 789999999988777 57767777655543
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.5e-42 Score=389.12 Aligned_cols=418 Identities=20% Similarity=0.193 Sum_probs=302.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~ 115 (564)
+++.+.+.+++. |+..|+++|. +++.+ .++++++++||||||||++++.++ .++++++|++|+|+||.
T Consensus 10 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 10 ISSYAVGILKEE-----GIEELFPPQAEAVEKV--FSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHCC--------CCCCCCHHHHHHH--TTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHH
T ss_pred cCHHHHHHHHhC-----CCCCCCHHHHHHHHHH--hCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHH
Confidence 678888999888 9999999999 99987 569999999999999999986555 35689999999999999
Q ss_pred HHHHHHHh---cCCeeEEEeCcccccc---CCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHH
Q 008489 116 EVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (564)
Q Consensus 116 q~~~~l~~---~g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ 181 (564)
|++++++. .|++++..+|+..... .++.++++||+++. .+.++++|||||+|++.+.+||..+..+
T Consensus 83 q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp HHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 99999963 4889999999876543 37889999997763 3688999999999999987788776554
Q ss_pred HhccC--ccceEEEccCCCchHHHHHHHHcCCceEEEeecccCCCCCC----------C------c---ccccccc--cc
Q 008489 182 LLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------N------V---PLGSFSN--IQ 238 (564)
Q Consensus 182 ll~l~--~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~~~~~~~----------~------~---~l~~l~~--~~ 238 (564)
+-.+. ....++++.+++.+....+..+.+... +....++.|+... . . ....+.+ ..
T Consensus 163 l~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAPNVTEIAEWLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAE 241 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhc
Confidence 43332 356788898999888888888877532 2222223322110 0 0 0001111 14
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcC-----------------------------CCeEEEEcCCCCHHHHHHHHHHHhCC
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRG-----------------------------KHLCSIVYGSLPPETRTRQATRFNDA 288 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~-----------------------------~~~v~~lhg~l~~~~R~~~~~~F~~~ 288 (564)
+++++||+ ++++++.+++.|.+.. ..++.++||+|++++|..+++.|++
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~- 320 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR- 320 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC-
Confidence 67788888 8999999999887531 1258999999999999999999999
Q ss_pred CCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH-HH-HHh
Q 008489 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PL-LHK 365 (564)
Q Consensus 289 ~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~-~~-~~~ 365 (564)
|.++|||||+++++|||+| +++||+ +..+|||. ..|.|.++|.||+|||||.|.+ ..|.|+.+++++. .. +++
T Consensus 321 -g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~ 396 (702)
T 2p6r_A 321 -GNIKVVVATPTLAAGVNLPARRVIVR-SLYRFDGY-SKRIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDREIAVKR 396 (702)
T ss_dssp -TSCCEEEECSTTTSSSCCCBSEEEEC-CSEEESSS-EEECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGHHHHHHT
T ss_pred -CCCeEEEECcHHhccCCCCceEEEEc-CceeeCCC-CCcCCHHHHHHHhhhcCCCCCC-CCceEEEEecCccHHHHHHH
Confidence 9999999999999999999 665554 46677743 6789999999999999999952 3499999987653 22 223
Q ss_pred hhCCCChhhhhcCCCCc---HHHHHHHHhhCCCCCHHHHHHHHH--Hh----cccCCCccccCHHHHHHHHHHhcc--CC
Q 008489 366 SLLEPSPMLESAGLFPN---FDLIYMYSRLHPDSSLYGILEHFL--EN----AKLSENYFFANCEEVLKVATVIDQ--LP 434 (564)
Q Consensus 366 ~~~~~~~ei~~~~l~~~---~~~l~~~~~~~~~~~~~~~l~~f~--~~----~~~~~~~~~~~~~~l~~l~~~~~~--~~ 434 (564)
++. ..|++.+..+.+. ..++..........+..++.+.+. +. .+|....+..+++.|..++.+..+ ..
T Consensus 397 ~l~-~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~ 475 (702)
T 2p6r_A 397 YIF-GEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLA 475 (702)
T ss_dssp TTS-SCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEE
T ss_pred Hhc-CCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeec
Confidence 443 4456666777652 223333333333345556655322 11 134445566677778888887765 56
Q ss_pred CCHHHHHHHhccCCCCCCHHHHHHHHHHHHH--HhhcCccchhh
Q 008489 435 LRLHEKYLFCISPVDMNDDISSQGLTQFATN--YSKKGIVQLRE 476 (564)
Q Consensus 435 lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~--~~~~~~~~i~~ 476 (564)
+|..|+.+..+ | .+|..+++++..... .|..+.+.+-+
T Consensus 476 ~t~lG~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 515 (702)
T 2p6r_A 476 PTKLGSLVSRL-Y---IDPLTGFIFHDVLSRMELSDIGALHLIC 515 (702)
T ss_dssp ECHHHHHHHHT-T---CCHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred cChHHHHHHHH-h---CCHHHHHHHHHHhhcccCCHHHHHHHhh
Confidence 99999999888 9 689999999888776 55555555433
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-37 Score=330.71 Aligned_cols=295 Identities=18% Similarity=0.157 Sum_probs=220.3
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c--------CCCEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~--------~~~~li 106 (564)
.+++.+.+.+++. |+..|+++|+ ++|.+ +++++++++||||||||++++..++ + ..+++|
T Consensus 62 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNKS-----GYKIPTPIQKCSIPVI--SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 3899999999998 9999999999 99998 5699999999999999999754432 2 347899
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
++|||+||.|+++.+.++ ++.+..++|+.... ..+..++++||+.+. .+.+++++|+||||+
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 214 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh
Confidence 999999999999999864 57788888865422 246789999996542 258899999999999
Q ss_pred cCCCCCcchHHHHHhccC-ccceEEEccCCCc-hHHHHHHHHc-CCceEEEeecccCCCC------------CCCccc-c
Q 008489 169 LGCKTRGFSFTRALLGIC-ANELHLCGDPAAV-PLIQQILQVT-GDDVKVQSYERLSPLV------------PLNVPL-G 232 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~-~~~~~l~~~~~~~-~~~~~l~~~~-g~~~~v~~~~~~~~~~------------~~~~~l-~ 232 (564)
+.+..++..+..++..+. ....+++..+++. +.+..+.... .+...+.......... .....+ .
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 294 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHH
Confidence 987644444555554331 2233444444444 4445555432 2222221110000000 000111 1
Q ss_pred ccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 233 ~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
.+.+. .+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 295 ~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 295 ILSEQ-ADGTIVFVETKRGADFLASFLSEKEF-PTTSIHGDRLQSQREQALRDFKN--GSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHC-CTTEEEECSSHHHHHHHHHHHHHTTC-CEEEESTTSCHHHHHHHHHHHHT--SSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHhC-CCCEEEEEeCcHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEchhhhCCCCcccCC
Confidence 12222 33477777 89999999999998876 89999999999999999999999 9999999999999999998 99
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
+||+++. |.+..+|+||+||+||.|.. |.++.++.
T Consensus 371 ~VI~~d~---------p~~~~~y~qriGR~gR~g~~---G~a~~~~~ 405 (434)
T 2db3_A 371 HVINYDM---------PSKIDDYVHRIGRTGRVGNN---GRATSFFD 405 (434)
T ss_dssp EEEESSC---------CSSHHHHHHHHTTSSCTTCC---EEEEEEEC
T ss_pred EEEEECC---------CCCHHHHHHHhcccccCCCC---CEEEEEEe
Confidence 9999998 66999999999999999987 99998876
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.5e-37 Score=369.49 Aligned_cols=340 Identities=21% Similarity=0.247 Sum_probs=254.7
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-----------CCCEEEEccHHHHHHHHHHHH
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----------SSSGIYCGPLRLLAWEVAKRL 121 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~-----------~~~~li~~P~r~La~q~~~~l 121 (564)
|+..|+++|. ++|.+. ..++|++++||||||||++|..++ .+ ++++||++|+|+||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al-~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAAL-ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHH-TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 6899999999 999885 368899999999999999974443 32 346899999999999999888
Q ss_pred Hh----cCCeeEEEeCcccccc---CCCceEEEcceeccc----------cCcccEEEEccccccCCCCCcchHHHHHhc
Q 008489 122 NK----ANVSCDLITGQEREEV---DGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184 (564)
Q Consensus 122 ~~----~g~~~~~~~G~~~~~~---~~~~~i~~T~e~~~~----------l~~~~~vViDEaH~~~~~~rg~~~~~~ll~ 184 (564)
.+ .|+.|+.++|+..... .+++++++|||.++. ++.+++|||||+|++.+ +||..|..++..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 63 5899999999865432 367899999987643 47799999999999987 699988655432
Q ss_pred ------cCccceEEEccCCCchHHHHHHHHcCCc-----eEEEeecccCCCCCCC------cc----------c-ccccc
Q 008489 185 ------ICANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLSPLVPLN------VP----------L-GSFSN 236 (564)
Q Consensus 185 ------l~~~~~~l~~~~~~~~~~~~l~~~~g~~-----~~v~~~~~~~~~~~~~------~~----------l-~~l~~ 236 (564)
.....+++++.++++++..++++|.+.. +.+...+|+.|++... .. + ..+.+
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 313 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIME 313 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHH
Confidence 2356788999999999999999998753 3344445666654210 00 0 11111
Q ss_pred -ccCCCeEEEc-cHHHHHHHHHHHHHc------------------------------------CCCeEEEEcCCCCHHHH
Q 008489 237 -IQTGDCIVTF-SRHAIYRLKKAIESR------------------------------------GKHLCSIVYGSLPPETR 278 (564)
Q Consensus 237 -~~~g~~iv~~-s~~~~~~l~~~L~~~------------------------------------~~~~v~~lhg~l~~~~R 278 (564)
...+.++||+ ||+.++.+++.|.+. ...++++|||+|++++|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 2355677777 888888888777542 12359999999999999
Q ss_pred HHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCc--cccccCHhhHHhhhccCCCCCCCCCcEEEEEec
Q 008489 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (564)
Q Consensus 279 ~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~--~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~ 356 (564)
..+++.|++ |.++|||||+++++|||+|...||+.+...|++. ...|+|..+|.||+|||||.|.+ ..|.++.+.
T Consensus 394 ~~vE~~F~~--G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d-~~G~~ii~~ 470 (1724)
T 4f92_B 394 TLVEDLFAD--KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD-TKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHT--TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC-SCEEEEEEE
T ss_pred HHHHHHHHC--CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC-CccEEEEEe
Confidence 999999999 9999999999999999999888999888899886 45789999999999999999864 458777765
Q ss_pred C-CCHHHHHhhhCCCChhhhhcCCCCcHHHHHHHHhhCCCCCHHHHHH
Q 008489 357 S-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILE 403 (564)
Q Consensus 357 ~-~~~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~~~~~~~~~~~~l~ 403 (564)
. ++...+..++..+.| |.+.-.....+.|.+-.....-.+..++.+
T Consensus 471 ~~~~~~~~~~ll~~~~p-ieS~l~~~l~d~L~aeI~~g~i~~~~~a~~ 517 (1724)
T 4f92_B 471 SHGELQYYLSLLNQQLP-IESQMVSKLPDMLNAEIVLGNVQNAKDAVN 517 (1724)
T ss_dssp ESTTCCHHHHHTTTCSC-CCCCTTTTHHHHHHHHHHHTSCCBHHHHHH
T ss_pred cchhHHHHHHHHcCCCc-chhhccccHHHHHHHHHHHhhcCCHHHHHH
Confidence 4 445677777777665 444333344444444332333345555554
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.5e-36 Score=316.32 Aligned_cols=325 Identities=13% Similarity=0.143 Sum_probs=230.8
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~l 105 (564)
.++.+. +++.+.+.+++. |+..|++.|. +++.+....++++++++|||||||++++..+++ .++++
T Consensus 26 ~f~~~~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 26 SFEELR-LKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp CTGGGT-CCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CHhhCC-CCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 344443 899999999998 9999999999 999996533599999999999999998655542 23789
Q ss_pred EEccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc---cCCCceEEEcceecc---------ccCcccEEEEccccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~ 168 (564)
|++|+++|+.|++++++++ +..+....|+.... .....++++|++.+. .+.+++++|+||||+
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 9999999999999988864 56777777754432 235689999996541 237899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCch-HHHHHHH-HcCCceEEEeecccCCCCCCC-------------ccc-c
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERLSPLVPLN-------------VPL-G 232 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~-~~g~~~~v~~~~~~~~~~~~~-------------~~l-~ 232 (564)
+.+..........+........++++.+++.+ ....+.. ..+....+............. ..+ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 87532233333444455455556666656553 3333333 333322222111111111000 001 1
Q ss_pred ccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 233 ~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
.+.....+.++||+ ++++++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTSSCCCTTEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHHHHHC--CCCcEEEEcCccccCCCccCCC
Confidence 11223456778887 89999999999998876 89999999999999999999999 9999999999999999997 99
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCCH-----HHHHhhhCCCChh
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-----PLLHKSLLEPSPM 373 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~-----~~~~~~~~~~~~e 373 (564)
+||+++.+.... .+.|..+|.||+|||||.|.. |.|+.+++... ..+++.+.....+
T Consensus 337 ~Vi~~~~p~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 398 (412)
T 3fht_A 337 VVINFDLPVDKD---GNPDNETYLHRIGRTGRFGKR---GLAVNMVDSKHSMNILNRIQEHFNKKIER 398 (412)
T ss_dssp EEEESSCCBCSS---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSHHHHHHHHHHHHHHTCCCEE
T ss_pred EEEEECCCCCCC---CCcchheeecccCcccCCCCC---ceEEEEEcChhhHHHHHHHHHHHCCcccc
Confidence 999999853111 024789999999999999987 99998876542 3344444444443
No 9
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1e-36 Score=331.05 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=226.1
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVA 118 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~ 118 (564)
+++.+.+.+++. +|+..|++.|. +++.+ ++++++++++|||||||+++ +..+...+.++|++|+++|+.|++
T Consensus 9 L~~~~~~~l~~~----~g~~~~r~~Q~~~i~~i--l~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 9 LESGAKQVLQET----FGYQQFRPGQEEIIDTV--LSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHHHHHT----TCCSSCCTTHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHH
Confidence 577888888874 49999999999 99988 56899999999999999997 455566788999999999999999
Q ss_pred HHHHhcCCeeEEEeCccccc----------cCCCceEEEcceeccc--------cCcccEEEEccccccCCCCCcchHHH
Q 008489 119 KRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR 180 (564)
Q Consensus 119 ~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~--------l~~~~~vViDEaH~~~~~~rg~~~~~ 180 (564)
+++.++|+.+..++|..... .....++++||+.+.. ..+++++||||||+++ +||+.+..
T Consensus 83 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~--~~g~~fr~ 160 (523)
T 1oyw_A 83 DQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS--QWGHDFRP 160 (523)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC--TTSSCCCH
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC--cCCCccHH
Confidence 99999999999988864321 2357899999987631 2689999999999998 45644211
Q ss_pred H-------HhccCccceEEEccCCCchHHHHHHHHcCC--c-eEEEeecccCCC------CC-CCccccccccccCCCeE
Q 008489 181 A-------LLGICANELHLCGDPAAVPLIQQILQVTGD--D-VKVQSYERLSPL------VP-LNVPLGSFSNIQTGDCI 243 (564)
Q Consensus 181 ~-------ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~--~-~~v~~~~~~~~~------~~-~~~~l~~l~~~~~g~~i 243 (564)
. .-.++...+..+..+.+......+....+- . ..+..+.+.... .. ....+..+.+...+..|
T Consensus 161 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp HHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 1 111222223333333333344555555542 1 112222211100 00 01111222333455677
Q ss_pred EEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccC
Q 008489 244 VTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD 321 (564)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~ 321 (564)
||+ |+++++.+++.|.+.+. .+..+||++++++|..+++.|.+ |+.+|||||+++++|||+| |++||+++.
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~-~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlVaT~a~~~GiD~p~v~~VI~~~~---- 313 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGI-SAAAYHAGLENNVRADVQEKFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI---- 313 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECTTSCTTTCCTTCCEEEESSC----
T ss_pred EEeCCHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhCCCCccCccEEEEECC----
Confidence 777 89999999999998876 89999999999999999999999 8999999999999999997 999999998
Q ss_pred CccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCC
Q 008489 322 GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLE 369 (564)
Q Consensus 322 ~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~ 369 (564)
|.|.++|.||+|||||.|.. |.|+.+++. +...++.++..
T Consensus 314 -----p~s~~~y~Qr~GRaGR~g~~---~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 314 -----PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp -----CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHhccccCCCCC---ceEEEEeCHHHHHHHHHHHhc
Confidence 55999999999999999977 999888654 44455555554
No 10
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.5e-37 Score=367.10 Aligned_cols=341 Identities=18% Similarity=0.192 Sum_probs=260.6
Q ss_pred CCCCCCCCCchhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH--
Q 008489 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL-- 98 (564)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l-- 98 (564)
++.+|...-....+-..+.+++...+.+... +|..|+++|. +++.+. ..+++++++||||||||+++..++
T Consensus 892 ~~~~~~t~lldl~plp~s~L~~~~~e~l~~~-----~f~~fnpiQ~q~~~~l~-~~~~nvlv~APTGSGKTliaelail~ 965 (1724)
T 4f92_B 892 EKYPPPTELLDLQPLPVSALRNSAFESLYQD-----KFPFFNPIQTQVFNTVY-NSDDNVFVGAPTGSGKTICAEFAILR 965 (1724)
T ss_dssp CCCCCCCCCCCCCCCBGGGSCCHHHHTTTTT-----TCSBCCHHHHHHHHHHH-SCCSCEEEECCTTSCCHHHHHHHHHH
T ss_pred CCCCCCCccccCCCCCcccccCHHHHHHHHh-----cCCCCCHHHHHHHHHHh-cCCCcEEEEeCCCCCchHHHHHHHHH
Confidence 4445555544455556667777777777776 7999999999 998885 367899999999999999974433
Q ss_pred --Hc--CCCEEEEccHHHHHHHHHHHHHh-----cCCeeEEEeCccccc---cCCCceEEEcceeccc----------cC
Q 008489 99 --ES--SSSGIYCGPLRLLAWEVAKRLNK-----ANVSCDLITGQEREE---VDGAKHRAVTVEMADV----------VS 156 (564)
Q Consensus 99 --~~--~~~~li~~P~r~La~q~~~~l~~-----~g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~~----------l~ 156 (564)
.+ +++++|++|+|+||.|+++.+.+ .|++|+.++|+.... ..++.++++|||.++. ++
T Consensus 966 ~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~ 1045 (1724)
T 4f92_B 966 MLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQ 1045 (1724)
T ss_dssp HHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHH
T ss_pred HHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccc
Confidence 33 46899999999999999998863 488999999976532 2367899999987642 46
Q ss_pred cccEEEEccccccCCCCCcchHHHHHhcc------CccceEEEccCCCchHHHHHHHHcCCc----eEEEeecccCCCCC
Q 008489 157 DYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD----VKVQSYERLSPLVP 226 (564)
Q Consensus 157 ~~~~vViDEaH~~~~~~rg~~~~~~ll~l------~~~~~~l~~~~~~~~~~~~l~~~~g~~----~~v~~~~~~~~~~~ 226 (564)
++++||+||+|++.+ +||..+...+..+ ....+++++.++++++..++.+|.+.. +.+....|+.|++.
T Consensus 1046 ~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~ 1124 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLEL 1124 (1724)
T ss_dssp SCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEE
T ss_pred eeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEE
Confidence 799999999999987 6888876555332 345788999999999999999998752 33444456665532
Q ss_pred CCc----------------cc-ccccc-ccCCCeEEEc-cHHHHHHHHHHHHHc--------------------------
Q 008489 227 LNV----------------PL-GSFSN-IQTGDCIVTF-SRHAIYRLKKAIESR-------------------------- 261 (564)
Q Consensus 227 ~~~----------------~l-~~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~-------------------------- 261 (564)
... .+ ..+.+ ...+.++||+ |++.++.++..|...
T Consensus 1125 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 1204 (1724)
T 4f92_B 1125 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS 1204 (1724)
T ss_dssp EEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC
T ss_pred EEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc
Confidence 110 00 01111 1345566666 899998887766431
Q ss_pred -------CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCc--cccccCHhh
Q 008489 262 -------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPE 332 (564)
Q Consensus 262 -------~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~--~~~p~s~~~ 332 (564)
...+|++|||+|++++|..+++.|++ |.++|||||+++++|||+|...||+.+..+|||. ...|.+..+
T Consensus 1205 d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~ 1282 (1724)
T 4f92_B 1205 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYD 1282 (1724)
T ss_dssp CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHH
T ss_pred cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHH
Confidence 12369999999999999999999999 9999999999999999999888999899999986 456889999
Q ss_pred HHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCCCCh
Q 008489 333 VKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSP 372 (564)
Q Consensus 333 ~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~~~~ 372 (564)
|.||+|||||.|.+ ..|.|+.++.+ +...+++++..+.|
T Consensus 1283 ~~Qm~GRAGR~g~d-~~G~avll~~~~~~~~~~~ll~~~~p 1322 (1724)
T 4f92_B 1283 VLQMVGHANRPLQD-DEGRCVIMCQGSKKDFFKKFLYEPLP 1322 (1724)
T ss_dssp HHHHHTTBCCTTTC-SCEEEEEEEEGGGHHHHHHHTTSCBC
T ss_pred HHHhhccccCCCCC-CceEEEEEecchHHHHHHHHhCCCCc
Confidence 99999999999974 56999888654 45677788877665
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.3e-36 Score=315.21 Aligned_cols=309 Identities=16% Similarity=0.200 Sum_probs=225.1
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li 106 (564)
|.++. +++.+.+.+.+. |+..|++.|. +++.+....++++++++|||||||++++..++. +++++|
T Consensus 7 f~~~~-l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 80 (395)
T 3pey_A 7 FDELG-LAPELLKGIYAM-----KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAIC 80 (395)
T ss_dssp STTSC-CCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred HhhCC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEE
Confidence 33443 799999999998 9999999999 999985533499999999999999998665542 457999
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc--cCCCceEEEcceecc--------ccCcccEEEEccccccCCC
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE--VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~--~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~ 172 (564)
++|+++|+.|++++++++ ++.+...+|+.... ..+..++++|++.+. .+.++++||+||||++.+.
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc
Confidence 999999999999999864 56666766654332 236789999997642 3578999999999998752
Q ss_pred CCcch-HHHHHhccCccceEEEccCCCch-HHHHHHHHc-CCceEEEeecccCCCCCC-------------Cccc-cccc
Q 008489 173 TRGFS-FTRALLGICANELHLCGDPAAVP-LIQQILQVT-GDDVKVQSYERLSPLVPL-------------NVPL-GSFS 235 (564)
Q Consensus 173 ~rg~~-~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~~~-g~~~~v~~~~~~~~~~~~-------------~~~l-~~l~ 235 (564)
.++. ....+........++++.+++.+ ....+.... +....+............ ...+ ..+.
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (395)
T 3pey_A 161 -QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 239 (395)
T ss_dssp -TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHT
T ss_pred -cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHH
Confidence 2322 22233344444455666555553 334444433 222222211111111100 0001 1112
Q ss_pred cccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 236 ~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
....+.++||+ +++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 240 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 240 LMTIGSSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFRE--GRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp TTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred hccCCCEEEEeCCHHHHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHHHHC--CCCCEEEECChhhcCCCcccCCEEE
Confidence 23456777777 89999999999998876 89999999999999999999999 8999999999999999998 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++.+.+.. .+.|..+|.||+|||||.|.. |.|+.+...+
T Consensus 317 ~~~~p~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 356 (395)
T 3pey_A 317 NYDLPTLAN---GQADPATYIHRIGRTGRFGRK---GVAISFVHDK 356 (395)
T ss_dssp ESSCCBCTT---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSH
T ss_pred EcCCCCCCc---CCCCHHHhhHhccccccCCCC---ceEEEEEech
Confidence 999854332 245899999999999999987 9999887643
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2e-36 Score=319.45 Aligned_cols=315 Identities=16% Similarity=0.151 Sum_probs=228.6
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li 106 (564)
|..+. +++.+.+.++.. |+..|++.|. +++.+ ++++++++.+|||||||++++..++ ..++++|
T Consensus 39 f~~~~-l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 110 (410)
T 2j0s_A 39 FDTMG-LREDLLRGIYAY-----GFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALI 110 (410)
T ss_dssp GGGGC-CCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEE
T ss_pred HhhcC-CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEE
Confidence 44443 789999999988 9999999999 99988 5689999999999999999876665 2457999
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
++|+++|+.|+++.+.++ ++.+...+|+.... ..+..++++|++.+. .+.+++++|+||||+
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 999999999999999864 57788887765322 135689999996542 247799999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCch-HHHHHHH-HcCCceEEEeecccCCCCCC-------------Cccc-c
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERLSPLVPL-------------NVPL-G 232 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~-~~g~~~~v~~~~~~~~~~~~-------------~~~l-~ 232 (564)
+.+......+..++ .......++++.+++.+ ....+.. ..++...+............ ...+ .
T Consensus 191 ~~~~~~~~~~~~i~-~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 269 (410)
T 2j0s_A 191 MLNKGFKEQIYDVY-RYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269 (410)
T ss_dssp HTSTTTHHHHHHHH-TTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHH
T ss_pred HHhhhhHHHHHHHH-HhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHH
Confidence 98653333333333 33334445555555553 2222222 22222222211111111100 0011 1
Q ss_pred ccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 233 ~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
.+.....+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMPQKERESIMKEFRS--GASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC-ceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEECChhhCcCCcccCC
Confidence 11223456777777 89999999999998876 89999999999999999999999 8999999999999999997 99
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-H---HHHHhhhCCCChh
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPM 373 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-~---~~~~~~~~~~~~e 373 (564)
+||+++. |.+..+|.||+||+||.|.. |.|+.++.++ . ..+++++....++
T Consensus 347 ~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 347 LIINYDL---------PNNRELYIHRIGRSGRYGRK---GVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp EEEESSC---------CSSHHHHHHHHTTSSGGGCC---EEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred EEEEECC---------CCCHHHHHHhcccccCCCCc---eEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 9999998 66999999999999999987 9999886543 2 3444455555444
No 13
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7e-36 Score=327.90 Aligned_cols=305 Identities=18% Similarity=0.205 Sum_probs=224.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVA 118 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~-~~~l~~~~~~li~~P~r~La~q~~ 118 (564)
+++.+...+++. ||+..|++.|+ +++.+ +.++++++++|||+|||+++ +.++...+.+||++|+++|+.|++
T Consensus 28 l~~~l~~~L~~~----fg~~~~rp~Q~~~i~~i--l~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 28 WSGKVKDILQNV----FKLEKFRPLQLETINVT--MAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQL 101 (591)
T ss_dssp THHHHHHHHHHT----SCCCSCCTTHHHHHHHH--HTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHH
Confidence 678888888874 59999999999 99998 56999999999999999997 455566788999999999999999
Q ss_pred HHHHhcCCeeEEEeCccccc------------cCCCceEEEcceecc-------c------cCcccEEEEccccccCCCC
Q 008489 119 KRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMAD-------V------VSDYDCAVIDEIQMLGCKT 173 (564)
Q Consensus 119 ~~l~~~g~~~~~~~G~~~~~------------~~~~~~i~~T~e~~~-------~------l~~~~~vViDEaH~~~~~~ 173 (564)
+.+.++|+.+..++|+.... .....++++||+.+. . +.+++++||||||+++ +
T Consensus 102 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is--~ 179 (591)
T 2v1x_A 102 MVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS--Q 179 (591)
T ss_dssp HHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS--T
T ss_pred HHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc--c
Confidence 99999999999998865322 346789999997652 1 3589999999999998 4
Q ss_pred CcchHH----H--HHhccCccceEEEccCCCc--hHHHHHHHHcCCc--eEEEe-ecccC------CCCC-CC----ccc
Q 008489 174 RGFSFT----R--ALLGICANELHLCGDPAAV--PLIQQILQVTGDD--VKVQS-YERLS------PLVP-LN----VPL 231 (564)
Q Consensus 174 rg~~~~----~--~ll~l~~~~~~l~~~~~~~--~~~~~l~~~~g~~--~~v~~-~~~~~------~~~~-~~----~~l 231 (564)
||+.+. . .+..... ...+++.+++. .....+....+.. ..+.. +.++. +... .. ..+
T Consensus 180 ~g~dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~ 258 (591)
T 2v1x_A 180 WGHDFRPDYKALGILKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIV 258 (591)
T ss_dssp TCTTCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHH
Confidence 563321 1 1111111 23333433333 3334444444321 11111 11110 0000 00 011
Q ss_pred cccccc-cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-
Q 008489 232 GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (564)
Q Consensus 232 ~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip- 308 (564)
..+... ..+..|||+ |+++++.+++.|.+.+. .+..+||+|++++|..+++.|.+ |+.+|||||+++++|||+|
T Consensus 259 ~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~-~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlVAT~a~~~GID~p~ 335 (591)
T 2v1x_A 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI-HAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFGMGIDKPD 335 (591)
T ss_dssp HHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEECTTSCTTCCCSC
T ss_pred HHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhcCCCccc
Confidence 122222 345566666 89999999999998877 89999999999999999999999 9999999999999999998
Q ss_pred ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhCC
Q 008489 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLE 369 (564)
Q Consensus 309 v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~~~~ 369 (564)
|++||+++. |.|..+|+||+|||||.|.. |.|+.++.. +...+..++..
T Consensus 336 V~~VI~~~~---------p~s~~~y~Qr~GRaGR~G~~---g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 336 VRFVIHHSM---------SKSMENYYQESGRAGRDDMK---ADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp EEEEEESSC---------CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHTTT
T ss_pred ccEEEEeCC---------CCCHHHHHHHhccCCcCCCC---ceEEEEEChHHHHHHHHHHhh
Confidence 999999999 55999999999999999987 999888764 34555555544
No 14
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=319.47 Aligned_cols=302 Identities=18% Similarity=0.166 Sum_probs=220.1
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------- 100 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------------- 100 (564)
|.++ .+++.+.+.+... |+..|+++|. ++|.+ ++++++++++|||||||++++..++.
T Consensus 17 f~~~-~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 17 FSDV-EMGEIIMGNIELT-----RYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp GGGS-CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HhhC-CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 4444 3799999999988 9999999999 99988 56999999999999999987544431
Q ss_pred ------------CCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc-----
Q 008489 101 ------------SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD----- 153 (564)
Q Consensus 101 ------------~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~----- 153 (564)
.++++|++|+++|+.|+++++.++ ++.+..++|+.... ..+..++++|++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER 168 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc
Confidence 146899999999999999999853 67888888865321 246789999996652
Q ss_pred ---ccCcccEEEEccccccCCCCCcchHHHHHhc--cCc-cceEEEccCCCch-HHHHHHH-HcCCceEEEeecccCCC-
Q 008489 154 ---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICA-NELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERLSPL- 224 (564)
Q Consensus 154 ---~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~--l~~-~~~~l~~~~~~~~-~~~~l~~-~~g~~~~v~~~~~~~~~- 224 (564)
.+.+++++|+||||++.+..++..+..++.. +.. ...++++.+++.+ .+..+.. ..+....+.........
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 2578999999999999865434444444432 221 1344555555543 3344443 33332222211100000
Q ss_pred -----------CCCCccc-cccccc-cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCC
Q 008489 225 -----------VPLNVPL-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290 (564)
Q Consensus 225 -----------~~~~~~l-~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g 290 (564)
......+ ..+... ..+.++||+ ++++++.+++.|.+.+. .+..+||++++++|..+++.|++ |
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g 325 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--G 325 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHH--T
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-CeeEecCCCCHHHHHHHHHHHHc--C
Confidence 0000111 112222 345577777 89999999999998876 89999999999999999999999 8
Q ss_pred CeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 291 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 291 ~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+.+|||||+++++|+|+| +++||+++. |.|..+|.||+||+||.|.. |.|+.+++.+
T Consensus 326 ~~~vlvaT~~~~~Gidip~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 383 (417)
T 2i4i_A 326 KSPILVATAVAARGLDISNVKHVINFDL---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 383 (417)
T ss_dssp SSCEEEECHHHHTTSCCCCEEEEEESSC---------CSSHHHHHHHHTTBCC--CC---EEEEEEECGG
T ss_pred CCCEEEECChhhcCCCcccCCEEEEEcC---------CCCHHHHHHhcCccccCCCC---ceEEEEEccc
Confidence 999999999999999998 999999998 66999999999999999987 9999887644
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.2e-36 Score=315.05 Aligned_cols=301 Identities=18% Similarity=0.187 Sum_probs=223.6
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li 106 (564)
|+++. +++.+.+.+.+. |+..|++.|. +++.+. +++++++.+|||||||++++..++ ...+++|
T Consensus 23 f~~~~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 94 (400)
T 1s2m_A 23 FEDFY-LKRELLMGIFEA-----GFEKPSPIQEEAIPVAI--TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALI 94 (400)
T ss_dssp GGGGC-CCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred hhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEE
Confidence 44553 789999999998 9999999999 999885 478899999999999999865554 2347899
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceec--------cccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~--------~~l~~~~~vViDEaH~ 168 (564)
++|+++|+.|++++++++ ++.+...+|+.... ..+..++++|++.+ ..+.+++++|+||||+
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 174 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH
T ss_pred EcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH
Confidence 999999999999999854 67888888865422 24678999999654 2357899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCch-HHHH-HHHHcCCceEEEeecccCCCC-----------CCCccc-ccc
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQ-ILQVTGDDVKVQSYERLSPLV-----------PLNVPL-GSF 234 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~-l~~~~g~~~~v~~~~~~~~~~-----------~~~~~l-~~l 234 (564)
+.+.+++..+..++ .......++++.+++.+ .... +....+..+.+.......... .....+ ..+
T Consensus 175 ~~~~~~~~~~~~i~-~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 175 MLSRDFKTIIEQIL-SFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp HSSHHHHHHHHHHH-TTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHH-HhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHH
Confidence 87653332333333 33333344444444443 2333 334444444332221111000 000011 111
Q ss_pred ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE
Q 008489 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (564)
Q Consensus 235 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V 312 (564)
.....+.++||+ ++++++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDLGY-SCYYSHARMKQQERNKVFHEFRQ--GKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEESSCSSSSCCCTTEEEE
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccCCCccCCCEE
Confidence 223456777777 89999999999998876 89999999999999999999999 8999999999999999997 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|+++. |.+..+|.||+|||||.|.. |.|+.+++.+
T Consensus 331 i~~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~l~~~~ 365 (400)
T 1s2m_A 331 INFDF---------PKTAETYLHRIGRSGRFGHL---GLAINLINWN 365 (400)
T ss_dssp EESSC---------CSSHHHHHHHHCBSSCTTCC---EEEEEEECGG
T ss_pred EEeCC---------CCCHHHHHHhcchhcCCCCC---ceEEEEeccc
Confidence 99998 66999999999999999987 9999887654
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=319.01 Aligned_cols=297 Identities=14% Similarity=0.165 Sum_probs=209.3
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li~~P~r 111 (564)
.+++.+.+.+++. ++..|++.|. +++.+ ++++++++.+|||||||++++..++ ..++++|++|++
T Consensus 46 ~l~~~~~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHhHHH--hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 3788999999988 9999999999 99988 5589999999999999999866654 245789999999
Q ss_pred HHHHHHHHHHHhc----CCeeEEEeCccccc-------cCCCceEEEcceecc--------ccCcccEEEEccccccCCC
Q 008489 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~ 172 (564)
+|+.|++++++++ +..+...+|+.... ..+..++++|++.+. .+.++++||+||||++.+.
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 9999999999864 67777777754322 146789999996642 2577999999999998755
Q ss_pred CCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH-cCCceEEEeecccCCCCCC----------C---ccc-ccccc
Q 008489 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV-TGDDVKVQSYERLSPLVPL----------N---VPL-GSFSN 236 (564)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~-~g~~~~v~~~~~~~~~~~~----------~---~~l-~~l~~ 236 (564)
.++..+..++..+ ....++++.+++. +....+... ......+............ . ..+ ..+..
T Consensus 199 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 199 GFKDQIYDIFQKL-NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 277 (414)
T ss_dssp TTHHHHHHHHTTS-CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS
T ss_pred CcHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh
Confidence 3334444444433 3445566666665 333333332 2332222211111111100 0 011 12223
Q ss_pred ccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 237 ~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
...+.++||+ ++++++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDF-TVSAMHGDMDQKERDVIMREFRS--GSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTC-CCEEC---CHHHHHHHHHHHHSC--C---CEEECSSCC--CCGGGCSCEEE
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHHHHc--CCCcEEEECCccccCCCccCCCEEEE
Confidence 3556778887 89999999999988776 89999999999999999999999 9999999999999999998 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.+..+|.||+|||||.|.. |.|+.+++++
T Consensus 355 ~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 387 (414)
T 3eiq_A 355 YDL---------PTNRENYIHRIGRGGRFGRK---GVAINMVTEE 387 (414)
T ss_dssp SSC---------CSSTHHHHHHSCCC----------CEEEEECST
T ss_pred eCC---------CCCHHHhhhhcCcccCCCCC---ceEEEEEcHH
Confidence 998 66999999999999999987 9999887765
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-35 Score=307.77 Aligned_cols=296 Identities=18% Similarity=0.173 Sum_probs=219.1
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------CCCEEEEccHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLL 113 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------~~~~li~~P~r~L 113 (564)
+++.+.+.+++. |+..|++.|. +++.+.. .++++++.+|||||||++++..+.. +.+++|++|+++|
T Consensus 13 l~~~~~~~l~~~-----g~~~~~~~Q~~~i~~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L 86 (367)
T 1hv8_A 13 LSDNILNAIRNK-----GFEKPTDIQMKVIPLFLN-DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 86 (367)
T ss_dssp CCHHHHHHHHHH-----TCCSCCHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHH
Confidence 789999999998 9999999999 9998853 2379999999999999998655542 4578999999999
Q ss_pred HHHHHHHHHhc----CCeeEEEeCccccc-----cCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcc
Q 008489 114 AWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGF 176 (564)
Q Consensus 114 a~q~~~~l~~~----g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~ 176 (564)
+.|+++++.++ ++.+...+|+.... ..+..++++|++.+. .+.+++++|+||||++.+.....
T Consensus 87 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 166 (367)
T 1hv8_A 87 AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIK 166 (367)
T ss_dssp HHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHH
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHH
Confidence 99999999864 67777777765422 136789999996542 25789999999999997653323
Q ss_pred hHHHHHhccCccceEEEccCCCch-HHHHHH-HHcCCceEEEeecccCCCC---------CCCccccccccccCCCeEEE
Q 008489 177 SFTRALLGICANELHLCGDPAAVP-LIQQIL-QVTGDDVKVQSYERLSPLV---------PLNVPLGSFSNIQTGDCIVT 245 (564)
Q Consensus 177 ~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~-~~~g~~~~v~~~~~~~~~~---------~~~~~l~~l~~~~~g~~iv~ 245 (564)
.+..++ .......++++.+++.+ ...... ...++ +.+.......... .....+..+.....+..+||
T Consensus 167 ~~~~~~-~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf 244 (367)
T 1hv8_A 167 DVEKIL-NACNKDKRILLFSATMPREILNLAKKYMGD-YSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVF 244 (367)
T ss_dssp HHHHHH-HTSCSSCEEEEECSSCCHHHHHHHHHHCCS-EEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEE
T ss_pred HHHHHH-HhCCCCceEEEEeeccCHHHHHHHHHHcCC-CeEEEecCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEE
Confidence 333333 33334445555555543 233333 33443 2222111111110 00011111122345667777
Q ss_pred c-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCc
Q 008489 246 F-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGV 323 (564)
Q Consensus 246 ~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~ 323 (564)
+ ++++++.+++.|++.+. .+..+||+++.++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 245 ~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------ 315 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGF-KAGAIHGDLSQSQREKVIRLFKQ--KKIRILIATDVMSRGIDVNDLNCVINYHL------ 315 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTC-CEEEECSSSCHHHHHHHHHHHHT--TSSSEEEECTTHHHHCCCSCCSEEEESSC------
T ss_pred ECCHHHHHHHHHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCCcccCCEEEEecC------
Confidence 7 89999999999998876 89999999999999999999999 8999999999999999997 999999998
Q ss_pred cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 324 ~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|.|..+|.||+|||||.|.. |.|+.+++.+
T Consensus 316 ---~~s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~ 345 (367)
T 1hv8_A 316 ---PQNPESYMHRIGRTGRAGKK---GKAISIINRR 345 (367)
T ss_dssp ---CSCHHHHHHHSTTTCCSSSC---CEEEEEECTT
T ss_pred ---CCCHHHhhhcccccccCCCc---cEEEEEEcHH
Confidence 66999999999999999976 8888886543
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-36 Score=348.43 Aligned_cols=324 Identities=21% Similarity=0.282 Sum_probs=242.1
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHhc--CCeeEE
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNKA--NVSCDL 130 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~----~l~~~~~~li~~P~r~La~q~~~~l~~~--g~~~~~ 130 (564)
+|. |++.|. +++.+ .++++++++||||||||+++.. .+..+++++|++|+++|+.|+++++++. ++.++.
T Consensus 37 ~f~-l~~~Q~~aI~~i--l~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~ 113 (997)
T 4a4z_A 37 PFE-LDTFQKEAVYHL--EQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGL 113 (997)
T ss_dssp SSC-CCHHHHHHHHHH--HTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEE
T ss_pred CCC-CCHHHHHHHHHH--HcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 554 799999 99988 5689999999999999988532 2334567999999999999999999975 779999
Q ss_pred EeCccccccCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHH
Q 008489 131 ITGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLI 202 (564)
Q Consensus 131 ~~G~~~~~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~ 202 (564)
++|+.... ....++++||+.+. .+.++++|||||||++.+.++|..|..++..+. ..+++++.++|.+..
T Consensus 114 l~G~~~~~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~-~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 114 ITGDVQIN-PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-QHVKFILLSATVPNT 191 (997)
T ss_dssp ECSSCEEC-TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC-TTCEEEEEECCCTTH
T ss_pred EeCCCccC-CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc-cCCCEEEEcCCCCCh
Confidence 99987543 46889999997652 368899999999999998889999998887665 456677777777666
Q ss_pred HHHHHHcC-----CceEEEeecccCCCCCC--------------------------------------------------
Q 008489 203 QQILQVTG-----DDVKVQSYERLSPLVPL-------------------------------------------------- 227 (564)
Q Consensus 203 ~~l~~~~g-----~~~~v~~~~~~~~~~~~-------------------------------------------------- 227 (564)
..+..|.+ ..+.+....++.|+...
T Consensus 192 ~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (997)
T 4a4z_A 192 YEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTA 271 (997)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccc
Confidence 56665543 22222222222222100
Q ss_pred -------------------------------------------------C----ccccccccccCCCeEEEc-cHHHHHH
Q 008489 228 -------------------------------------------------N----VPLGSFSNIQTGDCIVTF-SRHAIYR 253 (564)
Q Consensus 228 -------------------------------------------------~----~~l~~l~~~~~g~~iv~~-s~~~~~~ 253 (564)
. ..+..+.....+.+|||+ |++.|+.
T Consensus 272 ~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~ 351 (997)
T 4a4z_A 272 RGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEE 351 (997)
T ss_dssp ---------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 0 000111122335677777 8999999
Q ss_pred HHHHHHHcCC--------------------------------------CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEE
Q 008489 254 LKKAIESRGK--------------------------------------HLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (564)
Q Consensus 254 l~~~L~~~~~--------------------------------------~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~Vl 295 (564)
++..|.+.+. .++.++||+|++.+|..+++.|.+ |.++||
T Consensus 352 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kVL 429 (997)
T 4a4z_A 352 YADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK--GFIKVL 429 (997)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCCSEE
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC--CCCcEE
Confidence 9988855322 258999999999999999999999 999999
Q ss_pred EeccccccccccCccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC---CHHHHHhhhCCCCh
Q 008489 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE---DLPLLHKSLLEPSP 372 (564)
Q Consensus 296 VaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~---~~~~~~~~~~~~~~ 372 (564)
|||+++++|||+|-+.||+.+..+|||....|+|..+|.||+|||||.|.+ ..|.|+.++.+ +...+++++.....
T Consensus 430 vAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~i~~~~~ 508 (997)
T 4a4z_A 430 FATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEVTMGVPT 508 (997)
T ss_dssp EECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHHHHSCCC
T ss_pred EEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHHhcCCCc
Confidence 999999999999989999999999999999999999999999999999953 55999999743 33566666555444
Q ss_pred hhhhcCCCCcHHHHHHHH
Q 008489 373 MLESAGLFPNFDLIYMYS 390 (564)
Q Consensus 373 ei~~~~l~~~~~~l~~~~ 390 (564)
+ .++.+.+.+..+....
T Consensus 509 ~-l~s~~~~~ynm~l~ll 525 (997)
T 4a4z_A 509 R-LQSQFRLTYNMILNLL 525 (997)
T ss_dssp C-CCCCCCCCHHHHHHHH
T ss_pred c-cccccccchHHHHHHH
Confidence 3 4455555555444433
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.7e-36 Score=312.06 Aligned_cols=301 Identities=16% Similarity=0.175 Sum_probs=221.5
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li 106 (564)
|+++ .+++.+.+.++.. |+..|++.|. +++.+ +.++++++.+|||+|||++++..++. .++++|
T Consensus 10 f~~~-~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 81 (391)
T 1xti_A 10 FRDF-LLKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 81 (391)
T ss_dssp GGGG-CCCHHHHHHHHHH-----SCCSCCHHHHHHHHHH--TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEE
T ss_pred hhhc-CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEE
Confidence 4444 3789999999988 9999999999 99988 56899999999999999997655542 347899
Q ss_pred EccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc-------cCCCceEEEcceecc--------ccCcccEEEEccc
Q 008489 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEI 166 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~~--------~l~~~~~vViDEa 166 (564)
++|+++|+.|+++.+.++ ++.+..++|+.... .....++++|++.+. .+.+++++|+|||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 999999999999998865 78899888865422 124689999997652 3578999999999
Q ss_pred cccCCCCCcch-HHHHHhccCccceEEEccCCCc-hHHHHHH-HHcCCceEEEeecccC-CCCCC------------Ccc
Q 008489 167 QMLGCKTRGFS-FTRALLGICANELHLCGDPAAV-PLIQQIL-QVTGDDVKVQSYERLS-PLVPL------------NVP 230 (564)
Q Consensus 167 H~~~~~~rg~~-~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~-~~~g~~~~v~~~~~~~-~~~~~------------~~~ 230 (564)
|++.+. .++. ....++.......++++.+++. +....+. ...+....+....... ..... ...
T Consensus 162 H~~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 162 DKMLEQ-LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHTSS-HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHhhc-cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 999752 1221 1122333333344444444443 2233333 3333333322111100 00000 001
Q ss_pred c-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC
Q 008489 231 L-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (564)
Q Consensus 231 l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip 308 (564)
+ ..+.....+.++||+ ++++++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+|
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEECChhhcCCCcc
Confidence 1 112223456777777 89999999999998876 89999999999999999999999 8999999999999999998
Q ss_pred -ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 309 -v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++||+++. |.|..+|.||+||+||.|.. |.|+.+..++
T Consensus 318 ~~~~Vi~~~~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 357 (391)
T 1xti_A 318 RVNIAFNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSDE 357 (391)
T ss_dssp TEEEEEESSC---------CSSHHHHHHHHCBCSSSCCC---CEEEEEECSH
T ss_pred cCCEEEEeCC---------CCCHHHHHHhcccccCCCCc---eEEEEEEccc
Confidence 999999998 66999999999999999987 9998887654
No 20
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=342.43 Aligned_cols=323 Identities=20% Similarity=0.252 Sum_probs=240.3
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEE
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~ 131 (564)
++|. |+++|. +++.+. ++++++++||||||||+++..++ ..+++++|++|+++|+.|+++++.+....++++
T Consensus 83 ~~f~-L~~~Q~eai~~l~--~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCID--RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHH--HTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCC-CCHHHHHHHHHHH--cCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 4665 999999 999884 58999999999999999974333 356789999999999999999999754489999
Q ss_pred eCccccccCCCceEEEcceec--------cccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHH
Q 008489 132 TGQEREEVDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (564)
Q Consensus 132 ~G~~~~~~~~~~~i~~T~e~~--------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~ 203 (564)
+|+.... .+..++++|++++ ..+.++++|||||+|.+.+.+||..|..++..+. ...++++.+++.+...
T Consensus 160 tGd~~~~-~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~-~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 160 TGDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-DKVRYVFLSATIPNAM 237 (1010)
T ss_dssp CSSCEEC-TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC-TTCEEEEEECCCTTHH
T ss_pred eCCCccC-CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC-CCCeEEEEcCCCCCHH
Confidence 9987654 4678999999765 2368899999999999998889999887776554 4567777788887666
Q ss_pred HHHHHcC----Cce-EEEeecccCCCCCC---------------------------------------------------
Q 008489 204 QILQVTG----DDV-KVQSYERLSPLVPL--------------------------------------------------- 227 (564)
Q Consensus 204 ~l~~~~g----~~~-~v~~~~~~~~~~~~--------------------------------------------------- 227 (564)
.+..|.+ ... .+....++.++...
T Consensus 238 e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 317 (1010)
T 2xgj_A 238 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQT 317 (1010)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccc
Confidence 6655532 222 22222222221100
Q ss_pred ----------Cccc----cccccccCCCeEEEc-cHHHHHHHHHHHHHcCC-----------------------------
Q 008489 228 ----------NVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK----------------------------- 263 (564)
Q Consensus 228 ----------~~~l----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~----------------------------- 263 (564)
...+ ..+.....+.+|||+ +++.++.+++.|...+.
T Consensus 318 ~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 397 (1010)
T 2xgj_A 318 YKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQ 397 (1010)
T ss_dssp -----------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHH
T ss_pred cccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 0000 001111233566666 89999999888865221
Q ss_pred ---------CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccccCCccccccCHhhHH
Q 008489 264 ---------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334 (564)
Q Consensus 264 ---------~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~~~~~~~p~s~~~~~ 334 (564)
.++.++||+|++.+|..+++.|++ |.++|||||+++++|||+|...||+.+..+||+...+|+|..+|.
T Consensus 398 ~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~--G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~ 475 (1010)
T 2xgj_A 398 IKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 475 (1010)
T ss_dssp HHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHT--TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHH
T ss_pred HHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhc--CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHh
Confidence 138999999999999999999999 999999999999999999955566667888999888999999999
Q ss_pred hhhccCCCCCCCCCcEEEEEecCCC--HHHHHhhhCCCChhhhhcCCCCcHHHHHH
Q 008489 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDLIYM 388 (564)
Q Consensus 335 Qr~GRaGR~g~~~~~G~~~~l~~~~--~~~~~~~~~~~~~ei~~~~l~~~~~~l~~ 388 (564)
||+|||||.|.+ ..|.|+.++++. ...+.+++.....++ .+.+...+..+..
T Consensus 476 Qr~GRAGR~G~d-~~G~vi~l~~~~~e~~~~~~l~~~~~~~l-~s~f~~~~~~iln 529 (1010)
T 2xgj_A 476 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRL-DSAFHLGYNMILN 529 (1010)
T ss_dssp HHHTTBCCTTTC-SSEEEEEEECSCCCHHHHHHHHSCCCCCC-CCCCCCCHHHHHH
T ss_pred HhhhhcccCCCC-CceEEEEEECCCCCHHHHHHHHhCCCccc-ccccCCcHHHHHH
Confidence 999999999963 459999997654 456777776665544 3455554444443
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-35 Score=303.59 Aligned_cols=299 Identities=18% Similarity=0.214 Sum_probs=217.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-cCCCEEEEccHHHHHHHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-SSSSGIYCGPLRLLAWEVA 118 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-~~~~~li~~P~r~La~q~~ 118 (564)
+++.+.+.+++. |+..|++.|. +++.+ ++++++++.+|||||||++++..++ ..++++|++|+++|+.|++
T Consensus 1 l~~~i~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~ 73 (337)
T 2z0m_A 1 MNEKIEQAIREM-----GFKNFTEVQSKTIPLM--LQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVA 73 (337)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence 467888899888 9999999999 99988 4689999999999999999866554 4678999999999999999
Q ss_pred HHHHhc----CCeeEEEeCccccc-----cCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHH
Q 008489 119 KRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (564)
Q Consensus 119 ~~l~~~----g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ 181 (564)
++++++ +..+..++|+.... ..+..++++|++.+. .+.+++++|+||||.+.+..+...+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 74 SHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999854 57888888864321 235789999996642 3578999999999999754333333333
Q ss_pred HhccCccceEEEccCCCchHHHHHH-HHcCCceEEEeecccCCC-------C-CCCccccccccccCCCeEEEc-cHHHH
Q 008489 182 LLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLSPL-------V-PLNVPLGSFSNIQTGDCIVTF-SRHAI 251 (564)
Q Consensus 182 ll~l~~~~~~l~~~~~~~~~~~~l~-~~~g~~~~v~~~~~~~~~-------~-~~~~~l~~l~~~~~g~~iv~~-s~~~~ 251 (564)
+.........+..+.+..+...... ...+....+......... . .....+..+.....+.++||+ +++++
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~ 233 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRV 233 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHH
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHH
Confidence 3333333322222222223333333 333332222211110000 0 001111223334566778877 89999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCH
Q 008489 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 330 (564)
Q Consensus 252 ~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~ 330 (564)
+.+++.|. .+..+||+++.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++. |.|.
T Consensus 234 ~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---------~~s~ 297 (337)
T 2z0m_A 234 AKLVRLFD-----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLITTDVASRGLDIPLVEKVINFDA---------PQDL 297 (337)
T ss_dssp HHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECHHHHTTCCCCCBSEEEESSC---------CSSH
T ss_pred HHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEEcCccccCCCccCCCEEEEecC---------CCCH
Confidence 99888774 58899999999999999999999 9999999999999999998 999999998 6699
Q ss_pred hhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHh
Q 008489 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (564)
Q Consensus 331 ~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~~~~~~~ 365 (564)
.+|.||+|||||.|.. |.|+.+...+...+++
T Consensus 298 ~~~~Q~~GR~gR~g~~---g~~~~~~~~~~~~~~~ 329 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRK---GEAITFILNEYWLEKE 329 (337)
T ss_dssp HHHHHHHTTBCGGGCC---EEEEEEESSCHHHHHH
T ss_pred HHhhHhcCccccCCCC---ceEEEEEeCcHHHHHH
Confidence 9999999999999987 8888887766544443
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=351.55 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=236.6
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
....|+++|. +++.+ ..+++++++||||||||+++..++ ..+++++|++|+++|+.|+++++.+....+++++
T Consensus 181 ~~f~ltp~Q~~AI~~i--~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgllt 258 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCI--DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258 (1108)
T ss_dssp CSSCCCHHHHHHHHHH--TTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEEC
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEe
Confidence 5567999999 99988 679999999999999999975444 3467899999999999999999997655899999
Q ss_pred CccccccCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHH
Q 008489 133 GQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204 (564)
Q Consensus 133 G~~~~~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~ 204 (564)
|+.... .+..++++||+.+. .+.++++|||||||.+.+.++|..|..++..+. ...++++.++|.+....
T Consensus 259 Gd~~~~-~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~-~~~qvl~lSATipn~~e 336 (1108)
T 3l9o_A 259 GDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-DKVRYVFLSATIPNAME 336 (1108)
T ss_dssp SSCBCC-CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC-TTSEEEEEECSCSSCHH
T ss_pred CccccC-CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcC-CCceEEEEcCCCCCHHH
Confidence 987643 46889999997652 257899999999999998777777777665544 55667777777754444
Q ss_pred HHHHc----CC-ceEEEeecccCCCCCC----------------------------------------------------
Q 008489 205 ILQVT----GD-DVKVQSYERLSPLVPL---------------------------------------------------- 227 (564)
Q Consensus 205 l~~~~----g~-~~~v~~~~~~~~~~~~---------------------------------------------------- 227 (564)
+..+. +. ...+....++.++...
T Consensus 337 ~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 416 (1108)
T 3l9o_A 337 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTY 416 (1108)
T ss_dssp HHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------------
T ss_pred HHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccc
Confidence 44332 22 2222222222222110
Q ss_pred ---------Cc----cccccccccCCCeEEEc-cHHHHHHHHHHHHHcCC------------------------------
Q 008489 228 ---------NV----PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK------------------------------ 263 (564)
Q Consensus 228 ---------~~----~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~------------------------------ 263 (564)
.. .+..+.....+.+|||+ +++.|+.++..|...+.
T Consensus 417 ~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 496 (1108)
T 3l9o_A 417 KGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQI 496 (1108)
T ss_dssp --------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHH
T ss_pred ccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 00 00111112334667766 89999999988754211
Q ss_pred --------CeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHH
Q 008489 264 --------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVK 334 (564)
Q Consensus 264 --------~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~ 334 (564)
.+++++||+|++.+|..+++.|++ |.++|||||+++++|||+| +++||++ ..+|++...+|+|..+|+
T Consensus 497 ~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~-~~~~d~~~~r~iS~~eyi 573 (1108)
T 3l9o_A 497 KHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTS-VRKWDGQQFRWVSGGEYI 573 (1108)
T ss_dssp HHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH--TCCCEEEEESCCCSCCCC--CEEEESC-SEEESSSCEEECCHHHHH
T ss_pred HHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC--CCCeEEEECcHHhcCCCCCCceEEEec-CcccCccccccCCHHHHH
Confidence 128999999999999999999999 9999999999999999998 7777765 447888888899999999
Q ss_pred hhhccCCCCCCCCCcEEEEEecCCC--HHHHHhhhCCCChhhhhcCCCCcHHHHHHHH
Q 008489 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 390 (564)
Q Consensus 335 Qr~GRaGR~g~~~~~G~~~~l~~~~--~~~~~~~~~~~~~ei~~~~l~~~~~~l~~~~ 390 (564)
||+|||||.|.+ ..|+|+.++.+. ...+..++.....++ .+.+...+..+..+.
T Consensus 574 Qr~GRAGR~G~d-~~G~~ill~~~~~~~~~~~~l~~~~~~~L-~S~f~~~y~~ilnll 629 (1108)
T 3l9o_A 574 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRL-DSAFHLGYNMILNLM 629 (1108)
T ss_dssp HHHHHSCCSSSC-SSEEEEEEECCCCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHH
T ss_pred HhhcccCCCCCC-CceEEEEEecCCcCHHHHHHHhcCCCccc-ccccCCcHHHHHHHH
Confidence 999999999942 449999997654 356666766655543 345555555554443
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=325.51 Aligned_cols=311 Identities=14% Similarity=0.139 Sum_probs=122.9
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~-------~~~l 105 (564)
.+..+ .+++.+.+.+.+. |+..|+++|. ++|.+....+++++++||||||||++++.+++.. +++|
T Consensus 93 ~f~~~-~l~~~l~~~l~~~-----g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~l 166 (479)
T 3fmp_B 93 SFEEL-RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 166 (479)
T ss_dssp CSGGG-TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEE
T ss_pred CHHHc-CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEE
Confidence 34444 3789999999998 9999999999 9999955345999999999999999987777532 2799
Q ss_pred EEccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc---cCCCceEEEcceecc---------ccCcccEEEEccccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~---~~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~ 168 (564)
|++|+++||.|+++++.++ +..+....|..... .....++++|++.+. .+.++++|||||+|+
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred EEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 9999999999998888753 56677776654322 235689999996551 247899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCch-HHHHHHHH-cCCceEEEeecccCCC-------------CCCCccc-c
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQILQV-TGDDVKVQSYERLSPL-------------VPLNVPL-G 232 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~~-~g~~~~v~~~~~~~~~-------------~~~~~~l-~ 232 (564)
+.+..........+........++++.+++.+ ....+... ......+......... ......+ .
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 97632222233344444444455555555543 33344433 3332222111100000 0011111 2
Q ss_pred ccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-cc
Q 008489 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (564)
Q Consensus 233 ~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~ 310 (564)
.+.....+.++||+ +++.++.++..|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~-~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhCCc-cEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEccccccCCccccCC
Confidence 22223456677777 89999999999988766 89999999999999999999999 9999999999999999998 99
Q ss_pred EEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 311 ~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+||+++.+...+. +.+..+|.||+|||||.|.. |.|+.++...
T Consensus 404 ~VI~~d~p~~~~~---~~s~~~~~Qr~GRagR~g~~---G~~i~~~~~~ 446 (479)
T 3fmp_B 404 VVINFDLPVDKDG---NPDNETYLHRIGRTGRFGKR---GLAVNMVDSK 446 (479)
T ss_dssp -------------------------------------------------
T ss_pred EEEEecCCCCCcc---CCCHHHHHHHhcccccCCCC---ceEEEEEcCc
Confidence 9999998532110 24778999999999999987 9998887643
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5e-35 Score=321.64 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=220.8
Q ss_pred ccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC-------CCEEE
Q 008489 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS-------SSGIY 106 (564)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~-------~~~li 106 (564)
..+++.+.+.+.+. |+..|+++|. +++.+...++++++++||||||||++++..+ .+. .++||
T Consensus 77 ~~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~li 151 (563)
T 3i5x_A 77 GVLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 151 (563)
T ss_dssp TSSCHHHHHHHHTT-----CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEE
T ss_pred CCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEE
Confidence 34889999999988 9999999999 9998854368999999999999999964443 333 37899
Q ss_pred EccHHHHHHHHHHHHHhc--------CCeeEEEeCccccc-------cCCCceEEEcceecc---------ccCcccEEE
Q 008489 107 CGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSDYDCAV 162 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~--------g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~~---------~l~~~~~vV 162 (564)
++|+++||.|++++++++ +..+..++|+.... ..+..++++||+.+. .+..+++||
T Consensus 152 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 231 (563)
T 3i5x_A 152 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 231 (563)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEE
Confidence 999999999999999863 34566666654321 226789999997652 368899999
Q ss_pred EccccccCCCCCcchHHHHHhccC------ccceEEEccCCCch-HHHHHHHHcCC-ceEEEee--cccCCC--CCC---
Q 008489 163 IDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVP-LIQQILQVTGD-DVKVQSY--ERLSPL--VPL--- 227 (564)
Q Consensus 163 iDEaH~~~~~~rg~~~~~~ll~l~------~~~~~l~~~~~~~~-~~~~l~~~~g~-~~~v~~~--~~~~~~--~~~--- 227 (564)
|||||++.+..++..+..++..+. ....++++.+++.+ .+..+...... ...+... ....+. ...
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 999999986644444444332221 12344555555553 34445443322 2222111 000000 000
Q ss_pred -------Cc----ccc----cccc-ccCCCeEEEc-cHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHHHHHHhCC
Q 008489 228 -------NV----PLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDA 288 (564)
Q Consensus 228 -------~~----~l~----~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~~~~F~~~ 288 (564)
.. .+. .+.. ...+.+|||+ +++.++.+++.|.+. ....+..+||++++++|..+++.|++
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~- 390 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK- 390 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-
Confidence 00 001 1111 2345677777 899999999999876 13489999999999999999999999
Q ss_pred CCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhh
Q 008489 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKS 366 (564)
Q Consensus 289 ~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~~~~~~ 366 (564)
|+.+|||||+++++|||+| |++||+++. |.+..+|+||+|||||.|.. |.|+.++.. +...++.+
T Consensus 391 -g~~~vLvaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 391 -DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELPFVREL 457 (563)
T ss_dssp -CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHHHHHHH
T ss_pred -CCCCEEEEcchhhcCCCcccCCEEEEECC---------CCchhhhhhhcCccccCCCC---ceEEEEEchhHHHHHHHH
Confidence 9999999999999999998 999999998 66999999999999999977 998877653 44444443
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.3e-35 Score=321.24 Aligned_cols=314 Identities=15% Similarity=0.109 Sum_probs=221.5
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-------
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS------- 101 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~------- 101 (564)
++.....+++.+.+.++.. |+..|+++|. +++.+....++++++.+|||||||++++..++ ..
T Consensus 21 ~l~~~~~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 95 (579)
T 3sqw_A 21 SLLEEGVLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 95 (579)
T ss_dssp HHHHTTSSCHHHHHHHHTT-----TCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTS
T ss_pred HHhhcCCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCC
Confidence 3334445899999999999 9999999999 99988533689999999999999999644433 32
Q ss_pred CCEEEEccHHHHHHHHHHHHHhc--------CCeeEEEeCccccc-------cCCCceEEEcceecc---------ccCc
Q 008489 102 SSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSD 157 (564)
Q Consensus 102 ~~~li~~P~r~La~q~~~~l~~~--------g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~~---------~l~~ 157 (564)
.++||++|+++|+.|+++.+.++ ...+..+.|+.... ..+..++++||+.+. .+..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 37899999999999999999863 24566666654321 126789999997652 3588
Q ss_pred ccEEEEccccccCCCCCcchHHHHHhccC------ccceEEEccCCCc-hHHHHHHHHcC-CceEEEeec--ccCCC--C
Q 008489 158 YDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAV-PLIQQILQVTG-DDVKVQSYE--RLSPL--V 225 (564)
Q Consensus 158 ~~~vViDEaH~~~~~~rg~~~~~~ll~l~------~~~~~l~~~~~~~-~~~~~l~~~~g-~~~~v~~~~--~~~~~--~ 225 (564)
+++|||||||++.+..++..+..++..+. ....++++.+++. +.+..+..... ....+.... ...+. .
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999986533333333332221 1133445544554 33444443322 222221110 00000 0
Q ss_pred CC----------C----cccc----cccc-ccCCCeEEEc-cHHHHHHHHHHHHHcC--CCeEEEEcCCCCHHHHHHHHH
Q 008489 226 PL----------N----VPLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQAT 283 (564)
Q Consensus 226 ~~----------~----~~l~----~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~~R~~~~~ 283 (564)
.. . ..+. .+.. ...+.+|||+ +++.++.+++.|.+.. ...+..+||++++++|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 00 0 0001 1111 2345677777 8999999999998761 338999999999999999999
Q ss_pred HHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CHH
Q 008489 284 RFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLP 361 (564)
Q Consensus 284 ~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~~ 361 (564)
.|++ |+.+|||||+++++|||+| +++||+++. |.+..+|+||+|||||.|.. |.|+.++.. +..
T Consensus 336 ~F~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 336 RFKK--DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELP 401 (579)
T ss_dssp HHHH--CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHH
T ss_pred Hhhc--CCCeEEEEcchhhcCCCcccCCEEEEcCC---------CCCHHHhhhhccccccCCCC---ceEEEEEcccHHH
Confidence 9999 9999999999999999998 999999998 66999999999999999987 998888654 334
Q ss_pred HHHhh
Q 008489 362 LLHKS 366 (564)
Q Consensus 362 ~~~~~ 366 (564)
.++.+
T Consensus 402 ~~~~l 406 (579)
T 3sqw_A 402 FVREL 406 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.5e-36 Score=312.31 Aligned_cols=301 Identities=14% Similarity=0.169 Sum_probs=122.4
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li 106 (564)
+..+ .+++.+.+.+... |+..|++.|. +++.+. +++++++.+|||||||++++..++ ..++++|
T Consensus 23 f~~~-~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~li 94 (394)
T 1fuu_A 23 FDDM-ELDENLLRGVFGY-----GFEEPSAIQQRAIMPII--EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 94 (394)
T ss_dssp SGGG-CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHHH--HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred hhhc-CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEE
Confidence 3344 3899999999988 9999999999 999884 488999999999999999755444 2458999
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc-----cCCCceEEEcceecc--------ccCcccEEEEcccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~ 169 (564)
++|+++|+.|+++.+.++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||+|++
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 174 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh
Confidence 999999999999998853 67888888865432 125789999997642 2478999999999998
Q ss_pred CCCCCcchHHHHHhccCccceEEEccCCCch-HHHHHH-HHcCCceEEEeecccCCC-------------CCCCccc-cc
Q 008489 170 GCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQIL-QVTGDDVKVQSYERLSPL-------------VPLNVPL-GS 233 (564)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~-~~~g~~~~v~~~~~~~~~-------------~~~~~~l-~~ 233 (564)
.+..+...+..++. ......++++.+++.+ ....+. ........+......... ......+ ..
T Consensus 175 ~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 175 LSSGFKEQIYQIFT-LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp HHTTCHHHHHHHHH-HSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------
T ss_pred hCCCcHHHHHHHHH-hCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHH
Confidence 75433333444333 3334445555555553 222333 334433333221110000 0011111 12
Q ss_pred cccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 234 FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 234 l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
+.....+.++||+ ++++++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++
T Consensus 254 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 254 YDSISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCcEEEEECCHHHHHHHHHHHHHcCC-eEEEeeCCCCHHHHHHHHHHHHC--CCCcEEEECChhhcCCCcccCCE
Confidence 2233456677777 89999999999988766 89999999999999999999998 8999999999999999998 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
||+++. |.|..+|.||+||+||.|.. |.|+.+++++
T Consensus 331 Vi~~~~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 366 (394)
T 1fuu_A 331 VINYDL---------PANKENYIHRIGRGGRFGRK---GVAINFVTNE 366 (394)
T ss_dssp ------------------------------------------------
T ss_pred EEEeCC---------CCCHHHHHHHcCcccCCCCC---ceEEEEEchh
Confidence 999988 66999999999999999977 9998887654
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-34 Score=311.32 Aligned_cols=320 Identities=13% Similarity=0.143 Sum_probs=189.2
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li~~P~r~ 112 (564)
+++.+.+.+... ++..|++.|+ +++.+....++++++++|||||||++++..++. .++++|++|+++
T Consensus 126 l~~~~~~~l~~~-----g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 126 XXXXXXXXXXXX-----XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred cccccccccccc-----cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 455666666666 8899999999 999885422499999999999999997655542 237999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEEeCccc--cccCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcch-
Q 008489 113 LAWEVAKRLNKAN----VSCDLITGQER--EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFS- 177 (564)
Q Consensus 113 La~q~~~~l~~~g----~~~~~~~G~~~--~~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~- 177 (564)
|+.|+++++++++ ..+....++.. ....+..++++|++.+. .+.++++|||||+|++.+. .++.
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~-~~~~~ 279 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ-QGLGD 279 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHH
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc-CCcHH
Confidence 9999999998753 33333333322 22236789999997642 3578999999999999862 2332
Q ss_pred HHHHHhccCccceEEEccCCCch-HHHHHHHHcCC-ceEEEeecccCCCCCCC-------------ccc-cccccccCCC
Q 008489 178 FTRALLGICANELHLCGDPAAVP-LIQQILQVTGD-DVKVQSYERLSPLVPLN-------------VPL-GSFSNIQTGD 241 (564)
Q Consensus 178 ~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~~~g~-~~~v~~~~~~~~~~~~~-------------~~l-~~l~~~~~g~ 241 (564)
....++.......++++.+++.+ ....+...... ...+............. ..+ ..+.....+.
T Consensus 280 ~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~ 359 (508)
T 3fho_A 280 QSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQ 359 (508)
T ss_dssp HHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCC
T ss_pred HHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCc
Confidence 22233333444556666666654 34444444332 22221111111100000 001 1122335577
Q ss_pred eEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccc
Q 008489 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (564)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k 319 (564)
++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.+.
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~~~~-~v~~~hg~~~~~~R~~il~~f~~--g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTADGH-TVACLTGNLEGAQRDAIMDSFRV--GTSKVLVTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTTTTC-CCCEEC-----CTTGGGTHHHHS--SSCCCCEECC-----CCCTTCCEEEC----C
T ss_pred EEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEeCChhhcCCCccCCCEEEEECCCC
Confidence 88887 79999999999988766 89999999999999999999999 9999999999999999997 99999998853
Q ss_pred cCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-----HHHHHhhhCCCChhhh
Q 008489 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-----LPLLHKSLLEPSPMLE 375 (564)
Q Consensus 320 ~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-----~~~~~~~~~~~~~ei~ 375 (564)
+.+. ..|..+|.||+|||||.|.. |.|+.+.... +..+++++.....++.
T Consensus 437 ~~~~---~~s~~~~~Qr~GRagR~g~~---g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 437 DQAG---RPDPQTYLHRIGRTGRFGRV---GVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp C--------CTHHHHHTTSCCC--------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred cccC---CCCHHHHHHHhhhcCCCCCC---cEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 2211 15899999999999999976 8887776532 3556666665555443
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-32 Score=294.12 Aligned_cols=284 Identities=15% Similarity=0.116 Sum_probs=188.6
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCccHHHHHHHHH-----HcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEe
Q 008489 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRL-----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (564)
Q Consensus 58 ~~~~~~~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l-----~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~ 132 (564)
|+..++++|+.+|.+.. ++++++++||||||||++++..+ ..+++++|++|||+||.|+++.+. |..++...
T Consensus 1 G~~q~~~iq~~i~~~l~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR--GLPIRYQT 77 (451)
T ss_dssp CCCCCSCCCCCCGGGGS-TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEECC
T ss_pred CCCCCCCcHHHHHHHHh-cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc--Cceeeeee
Confidence 56788899999998832 34445999999999999854333 245689999999999999999986 44454433
Q ss_pred Cccc-cccCCCceEEEcceec-------cccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchHHHH
Q 008489 133 GQER-EEVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204 (564)
Q Consensus 133 G~~~-~~~~~~~~i~~T~e~~-------~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~ 204 (564)
+... ....+..+.++|++.+ ..+.++++|||||||++. ......+..+.........++++.+++.+. .
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~ 154 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTD-PCSVAARGYISTRVEMGEAAAIFMTATPPG--S 154 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTT--C
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCC-cchHHHHHHHHHhhcCCCceEEEEccCCCc--c
Confidence 3322 2233556778887654 236899999999999872 211111111111112234566666666532 1
Q ss_pred HHHHcCCceEEEeecccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHH
Q 008489 205 ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283 (564)
Q Consensus 205 l~~~~g~~~~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~ 283 (564)
..........+....+..|..........+.+ ..+.++||+ ++++++.+++.|++.+. .+..+||++. ..+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~----~~~~~ 228 (451)
T 2jlq_A 155 TDPFPQSNSPIEDIEREIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRKTF----DTEYP 228 (451)
T ss_dssp CCSSCCCSSCEEEEECCCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECTTTH----HHHGG
T ss_pred chhhhcCCCceEecCccCCchhhHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCC-eEEECCHHHH----HHHHH
Confidence 11111111122222222232211111222222 456788887 89999999999998876 8999999765 36888
Q ss_pred HHhCCCCCeeEEEeccccccccccCccEEEecCccc-----cCCcc------ccccCHhhHHhhhccCCCCCC-CCCcEE
Q 008489 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVE------LRDLTVPEVKQIAGRAGRYGS-KFPVGE 351 (564)
Q Consensus 284 ~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k-----~~~~~------~~p~s~~~~~Qr~GRaGR~g~-~~~~G~ 351 (564)
.|++ |+.+|||||+++++|+|+|.++||+++..+ |++.. ..|.|.++|+||+|||||.|. . |.
T Consensus 229 ~f~~--g~~~vLVaT~v~~~GiDip~~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~---g~ 303 (451)
T 2jlq_A 229 KTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE---DD 303 (451)
T ss_dssp GGGS--SCCSEEEECGGGGSSCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC---CE
T ss_pred hhcc--CCceEEEECCHHHhCcCCCCCEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC---cc
Confidence 9998 999999999999999999779999988322 22211 168899999999999999996 4 78
Q ss_pred EEEecCC
Q 008489 352 VTCLDSE 358 (564)
Q Consensus 352 ~~~l~~~ 358 (564)
|+.+...
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8888654
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-32 Score=290.93 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=196.7
Q ss_pred HHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHH
Q 008489 45 IRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAK 119 (564)
Q Consensus 45 l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~ 119 (564)
+.+.+++. +++ .|+++|. ++|.+ ++++++++++|||||||++++..++ .+++++|++|+++|+.|+++
T Consensus 10 ~~~~l~~~----~~~-~~~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKK----FGK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHH----HSS-CCCHHHHHHHHHH--TTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHh----cCC-CCCHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence 44444443 244 7899999 99998 5689999999999999998654432 45789999999999999999
Q ss_pred HHHh---cCCeeEEEeCccccc----------cCCCceEEEcceecc------ccCcccEEEEccccccCCCC-------
Q 008489 120 RLNK---ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD------VVSDYDCAVIDEIQMLGCKT------- 173 (564)
Q Consensus 120 ~l~~---~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~------~l~~~~~vViDEaH~~~~~~------- 173 (564)
++++ .|+++..++|+.... .....++++||+.+. .+.+++++|+||||++....
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 83 RLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHH
Confidence 9998 478999999876541 123789999997662 24789999999999875321
Q ss_pred --CcchH--HHHHhccCc-----------cceEEEccCCC-ch------HHHHHHHHc-CC----ceEEEeecccCCCCC
Q 008489 174 --RGFSF--TRALLGICA-----------NELHLCGDPAA-VP------LIQQILQVT-GD----DVKVQSYERLSPLVP 226 (564)
Q Consensus 174 --rg~~~--~~~ll~l~~-----------~~~~l~~~~~~-~~------~~~~l~~~~-g~----~~~v~~~~~~~~~~~ 226 (564)
.|+.- ...++.... ...++++.+++ .+ ....+.... +. .-.+....... .
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~- 239 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS--R- 239 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS--C-
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc--C-
Confidence 22221 222333221 34455555555 22 122222110 00 00011110000 1
Q ss_pred CCccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEE-EEcCCCCHHHHHHHHHHHhCCCCCeeEEEe----cc
Q 008489 227 LNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SD 299 (564)
Q Consensus 227 ~~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa----T~ 299 (564)
....+ ..+.. .++.++||+ +++.++.+++.|.+.+. .+. .+||. +|. ++.|++ |+.+|||| |+
T Consensus 240 ~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~----~r~--~~~f~~--g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 240 SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF----EKN--FEDFKV--GKINILIGVQAYYG 309 (414)
T ss_dssp CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTC-CEEESSSCH----HHH--HHHHHT--TSCSEEEEECCTTC
T ss_pred HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCC-ceehhhcCc----chH--HHHHhC--CCCeEEEEecCcCc
Confidence 11111 22222 346677777 89999999999998876 777 88985 343 999999 99999999 99
Q ss_pred ccccccccC--ccEEEecCccccCCccccc--cCHhhHHhhhccCCCCCCCC-CcEEEEEecC
Q 008489 300 AIGMGLNLN--ISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF-PVGEVTCLDS 357 (564)
Q Consensus 300 ~~~~Gldip--v~~VI~~~~~k~~~~~~~p--~s~~~~~Qr~GRaGR~g~~~-~~G~~~~l~~ 357 (564)
++++|+|+| |++||+++. | .+..+|.||+|||||.|.+. ..|.++.+..
T Consensus 310 ~~~~GiDip~~v~~VI~~~~---------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGT---------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESC---------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred hhhccCccccccCEEEEECC---------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 999999996 799999999 5 69999999999999988411 1399999983
No 30
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.98 E-value=3.6e-32 Score=297.31 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=186.3
Q ss_pred CccccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCC-CEEEEccHHHHHHHHHHHHHh-cCCeeEEEeCccccccCC
Q 008489 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS-SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDG 141 (564)
Q Consensus 64 ~~q~~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~~~-~~li~~P~r~La~q~~~~l~~-~g~~~~~~~G~~~~~~~~ 141 (564)
..|+.++.+. .++++++++||||||||++++..+++.+ +++|++|||+||.|+++++.+ +|..++..+|+... ..+
T Consensus 220 ~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~-~~~ 297 (666)
T 3o8b_A 220 TDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI-TTG 297 (666)
T ss_dssp CCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE-CCC
T ss_pred HHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec-cCC
Confidence 4444444442 4689999999999999999988888766 899999999999999999974 58888888888653 457
Q ss_pred CceEEEcceecc-----ccCcccEEEEccccccCCCCCcchHHHHHhccCccce-EEEccCCCchHHHHHHHHcC-CceE
Q 008489 142 AKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL-HLCGDPAAVPLIQQILQVTG-DDVK 214 (564)
Q Consensus 142 ~~~i~~T~e~~~-----~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~-~l~~~~~~~~~~~~l~~~~g-~~~~ 214 (564)
..++++|++.+- .+.+++++||||||++... ....+..++-.+..... .++..+++.+.. ..... ....
T Consensus 298 ~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~-~~~~l~~Il~~l~~~~~~llil~SAT~~~~---i~~~~p~i~~ 373 (666)
T 3o8b_A 298 APVTYSTYGKFLADGGCSGGAYDIIICDECHSTDST-TILGIGTVLDQAETAGARLVVLATATPPGS---VTVPHPNIEE 373 (666)
T ss_dssp CSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSCTTC---CCCCCTTEEE
T ss_pred CCEEEECcHHHHhCCCcccCcccEEEEccchhcCcc-HHHHHHHHHHhhhhcCCceEEEECCCCCcc---cccCCcceEE
Confidence 899999997651 2467999999999987532 11112222222322221 122224444321 11111 1111
Q ss_pred EEeecccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee
Q 008489 215 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (564)
Q Consensus 215 v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ 293 (564)
+... ........... ..+.....+++|||+ ++++++.+++.|++.+. .+..+||++++++ |.+ +..+
T Consensus 374 v~~~-~~~~i~~~~~~-~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~-~v~~lHG~l~q~e-------r~~--~~~~ 441 (666)
T 3o8b_A 374 VALS-NTGEIPFYGKA-IPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGI-NAVAYYRGLDVSV-------IPT--IGDV 441 (666)
T ss_dssp EECB-SCSSEEETTEE-ECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECTTSCGGG-------SCS--SSCE
T ss_pred Eeec-ccchhHHHHhh-hhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCC-cEEEecCCCCHHH-------HHh--CCCc
Confidence 1110 00111111111 113344677888888 89999999999998876 8999999999874 445 5669
Q ss_pred EEEeccccccccccCccEEEecCccc-------cCCc-----cccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 294 VLVASDAIGMGLNLNISRIIFSTMKK-------FDGV-----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 294 VlVaT~~~~~Gldipv~~VI~~~~~k-------~~~~-----~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
||||||++++|||+||++||+++..+ ||+. ...|.|.++|+||+||+|| |.. |. +.|++.+
T Consensus 442 VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~---G~-i~lvt~~ 514 (666)
T 3o8b_A 442 VVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR---GI-YRFVTPG 514 (666)
T ss_dssp EEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC---EE-EEESCCC
T ss_pred EEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC---CE-EEEEecc
Confidence 99999999999999999999877433 3332 1268899999999999999 655 98 7776544
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=5.7e-32 Score=297.85 Aligned_cols=280 Identities=15% Similarity=0.104 Sum_probs=189.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----H-cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeC
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----E-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G 133 (564)
..++++|+ .+|.+ +++++++++||||||||++++..+ . .+.+++|++|||+||.|+++.+.. ..+++..+
T Consensus 170 ~~~lpiq~~~i~~l--~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~--~~v~~~~~ 245 (618)
T 2whx_A 170 RIGEPDYEVDEDIF--RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG--LPIRYQTP 245 (618)
T ss_dssp CCCCCCCCCCGGGG--STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEECCT
T ss_pred ccCCCccccCHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--CceeEecc
Confidence 56777877 78877 679999999999999999963332 2 345899999999999999999873 44443322
Q ss_pred c-cccccCCCceEEEcceecc-------ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCchH-HHH
Q 008489 134 Q-EREEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL-IQQ 204 (564)
Q Consensus 134 ~-~~~~~~~~~~i~~T~e~~~-------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~~-~~~ 204 (564)
. ......+..+.++|...+. .+.++++|||||||++ +......+..++-.+.....++++.+++.+. ...
T Consensus 246 ~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~ 324 (618)
T 2whx_A 246 AVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP 324 (618)
T ss_dssp TSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS
T ss_pred cceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhh
Confidence 2 1122234455566665443 3799999999999998 2211112222222222244556666665532 111
Q ss_pred HHHHcCCceEEEeecccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHH
Q 008489 205 ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283 (564)
Q Consensus 205 l~~~~g~~~~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~ 283 (564)
+.......+.+.. ..+.......+..+.+ ..+++|||+ |+++++.+++.|++.+. .+..+||+ +|.++++
T Consensus 325 ~~~~~~~~~~v~~---~~~~~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~----~R~~~l~ 395 (618)
T 2whx_A 325 FPQSNSPIEDIER---EIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRK----TFDTEYP 395 (618)
T ss_dssp SCCCSSCEEEEEC---CCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTT----THHHHTT
T ss_pred hhccCCceeeecc---cCCHHHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCC-cEEEEChH----HHHHHHH
Confidence 2221111222222 1122222222333333 466788888 89999999999998876 89999985 6778999
Q ss_pred HHhCCCCCeeEEEeccccccccccCccEEEecCcccc-----CC------ccccccCHhhHHhhhccCCCCCCCCCcEEE
Q 008489 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF-----DG------VELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (564)
Q Consensus 284 ~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k~-----~~------~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~ 352 (564)
.|++ |+.+||||||++++|+|+|+++||+++..+. +. ....|.|.++|+||+|||||.|. ..|.|
T Consensus 396 ~F~~--g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~--~~G~a 471 (618)
T 2whx_A 396 KTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA--QEDDQ 471 (618)
T ss_dssp HHHH--SCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT--CCCEE
T ss_pred hhcC--CCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC--CCCeE
Confidence 9999 9999999999999999999999998876332 11 11347899999999999999974 12888
Q ss_pred EEecC
Q 008489 353 TCLDS 357 (564)
Q Consensus 353 ~~l~~ 357 (564)
+.+..
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 88874
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=5.2e-32 Score=305.06 Aligned_cols=283 Identities=17% Similarity=0.139 Sum_probs=165.7
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-----CCEEEEccHHHHHHHHHHHHHhc--
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-----SSGIYCGPLRLLAWEVAKRLNKA-- 124 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~-----~~~li~~P~r~La~q~~~~l~~~-- 124 (564)
+|+..|++.|. +++.+ +.++++++++|||||||++++..++ .. ++++|++|+++|+.|+++.+.++
T Consensus 9 ~g~~~lr~~Q~~~i~~~--l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPA--MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TC--CCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 39999999999 99988 5589999999999999999755543 22 68899999999999999999865
Q ss_pred --CCeeEEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHHhc---
Q 008489 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLG--- 184 (564)
Q Consensus 125 --g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~--- 184 (564)
|+.+..++|+..... .+..++++||+.+. .+.++++|||||||++.... .+..++..
T Consensus 87 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~---~~~~i~~~~l~ 163 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH---PYNMIMFNYLD 163 (696)
T ss_dssp TTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---HHHHHHHHHHH
T ss_pred cCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---cHHHHHHHHHH
Confidence 789999999764322 36789999997651 36789999999999997532 22322211
Q ss_pred -----cCccceEEEccCCCch---------HHHHHHHHc---CC-------------------ceEE-Eeeccc-C----
Q 008489 185 -----ICANELHLCGDPAAVP---------LIQQILQVT---GD-------------------DVKV-QSYERL-S---- 222 (564)
Q Consensus 185 -----l~~~~~~l~~~~~~~~---------~~~~l~~~~---g~-------------------~~~v-~~~~~~-~---- 222 (564)
......++++.+++.. ....+.... .. .... ..+... .
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1123345555544432 122222111 00 0000 000000 0
Q ss_pred ----------------------C---------------------------------------------------------
Q 008489 223 ----------------------P--------------------------------------------------------- 223 (564)
Q Consensus 223 ----------------------~--------------------------------------------------------- 223 (564)
.
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0
Q ss_pred ------------------------------------------------------CCCCCccc-cccccc----cCCCeEE
Q 008489 224 ------------------------------------------------------LVPLNVPL-GSFSNI----QTGDCIV 244 (564)
Q Consensus 224 ------------------------------------------------------~~~~~~~l-~~l~~~----~~g~~iv 244 (564)
.......+ ..+.+. ..+.+||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00000000 111111 3456788
Q ss_pred Ec-cHHHHHHHHHHHHHcCC---CeEEEE--------cCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 245 TF-SRHAIYRLKKAIESRGK---HLCSIV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~---~~v~~l--------hg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
|+ ++..++.+++.|.+.+. ..+..+ ||+|++++|.++++.|++ +|+.+|||||+++++|||+| +++
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~-~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh-cCCccEEEEechhhcCCcCccCCE
Confidence 87 89999999999998762 367777 569999999999999985 26889999999999999998 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
||+++. |.+..+|+||+|| ||.+. |.|+.+++.+
T Consensus 483 VI~~d~---------p~s~~~~~Qr~GR-GR~~~----g~~~~l~~~~ 516 (696)
T 2ykg_A 483 VILYEY---------VGNVIKMIQTRGR-GRARG----SKCFLLTSNA 516 (696)
T ss_dssp EEEESC---------C--CCCC----------CC----CEEEEEESCH
T ss_pred EEEeCC---------CCCHHHHHHhhcc-CcCCC----ceEEEEecCC
Confidence 999999 6699999999999 99854 9999998765
No 33
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=2.1e-31 Score=284.94 Aligned_cols=265 Identities=17% Similarity=0.191 Sum_probs=172.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccc-ccCCCceEEEc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVT 148 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~-~~~~~~~i~~T 148 (564)
.++++++++||||||||++++..++ .+++++|++|||+||.|+++++. |..+....+.... ...+..+.++|
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~~~t~~~~i~~~~ 96 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQREHQGNEIVDVMC 96 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC--------CCCSEEEEE
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc--CceEeEEecccccCCCCCcEEEEEc
Confidence 4689999999999999999654443 45689999999999999999997 4445444333221 12344455666
Q ss_pred ceec-------cccCcccEEEEccccccCCC---CCcchHHHHHhccCccceEEEccCCCchHHHHHHHHcCCceEEEee
Q 008489 149 VEMA-------DVVSDYDCAVIDEIQMLGCK---TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218 (564)
Q Consensus 149 ~e~~-------~~l~~~~~vViDEaH~~~~~---~rg~~~~~~ll~l~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~ 218 (564)
...+ ..+.++++|||||||++... .+|+.... . .....++++.+++.+.. +........++...
T Consensus 97 ~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~--~--~~~~~~~il~SAT~~~~--~~~~~~~~~pi~~~ 170 (459)
T 2z83_A 97 HATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATK--V--ELGEAAAIFMTATPPGT--TDPFPDSNAPIHDL 170 (459)
T ss_dssp HHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH--H--HTTSCEEEEECSSCTTC--CCSSCCCSSCEEEE
T ss_pred hHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHH--h--ccCCccEEEEEcCCCcc--hhhhccCCCCeEEe
Confidence 6443 24789999999999986311 11221111 1 11345566666665321 11111111222222
Q ss_pred cccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEe
Q 008489 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (564)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa 297 (564)
....+.......+..+.+ ..+.+|||+ ++++++.+++.|++.+. .+..+||+ +|..+++.|++ |+.+||||
T Consensus 171 ~~~~~~~~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~-~v~~lh~~----~R~~~~~~f~~--g~~~iLVa 242 (459)
T 2z83_A 171 QDEIPDRAWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK-KVIQLNRK----SYDTEYPKCKN--GDWDFVIT 242 (459)
T ss_dssp ECCCCSSCCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEEESTT----CCCCCGGGSSS--CCCSEEEE
T ss_pred cccCCcchhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC-cEEecCHH----HHHHHHhhccC--CCceEEEE
Confidence 222222222222222322 367788888 89999999999998876 89999995 56688999998 99999999
Q ss_pred ccccccccccCccEEEecCccc-----cCCcc------ccccCHhhHHhhhccCCCCCC-CCCcEEEEEecCC
Q 008489 298 SDAIGMGLNLNISRIIFSTMKK-----FDGVE------LRDLTVPEVKQIAGRAGRYGS-KFPVGEVTCLDSE 358 (564)
Q Consensus 298 T~~~~~Gldipv~~VI~~~~~k-----~~~~~------~~p~s~~~~~Qr~GRaGR~g~-~~~~G~~~~l~~~ 358 (564)
|+++++|+|+|.++||+++..+ |++.. ..|.|.++|+||+|||||.|. . |.++.+...
T Consensus 243 T~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~---G~~~~~~~~ 312 (459)
T 2z83_A 243 TDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV---GDEYHYGGA 312 (459)
T ss_dssp SSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC---CEEEEECSC
T ss_pred CChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC---CeEEEEEcc
Confidence 9999999999779999966322 22221 258899999999999999985 4 888888655
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=4.4e-31 Score=289.22 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=153.1
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-----CCCEEEEccHHHHHHHHHHHHHhc---
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~-----~~~~li~~P~r~La~q~~~~l~~~--- 124 (564)
+...|+++|. +++.+ +.++++++.+|||||||++++..+. . .++++|++|+++|+.|+++.+.++
T Consensus 4 ~~~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4567899999 99988 5589999999999999999754442 2 568899999999999999999865
Q ss_pred -CCeeEEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHHhccC--
Q 008489 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-- 186 (564)
Q Consensus 125 -g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-- 186 (564)
|+.+..++|+..... .+..++++||+.+. .+.++++|||||||++.+. +. +..++..+.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT--SH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc--ch-HHHHHHHHHHh
Confidence 899999999774432 25789999996653 4678999999999999754 43 222221111
Q ss_pred -----ccceEEEccCCCc------------hHHHHHHHHcCCce--------------------EEEeecc-cCC-----
Q 008489 187 -----ANELHLCGDPAAV------------PLIQQILQVTGDDV--------------------KVQSYER-LSP----- 223 (564)
Q Consensus 187 -----~~~~~l~~~~~~~------------~~~~~l~~~~g~~~--------------------~v~~~~~-~~~----- 223 (564)
....++++.+++. ..+..+....+... ....+.. ..+
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1223444544444 12222222222110 0000000 000
Q ss_pred ----------------------------CC--------------------------------------------------
Q 008489 224 ----------------------------LV-------------------------------------------------- 225 (564)
Q Consensus 224 ----------------------------~~-------------------------------------------------- 225 (564)
..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred -----------------------------------------------------CCCccc-ccccc----ccCCCeEEEc-
Q 008489 226 -----------------------------------------------------PLNVPL-GSFSN----IQTGDCIVTF- 246 (564)
Q Consensus 226 -----------------------------------------------------~~~~~l-~~l~~----~~~g~~iv~~- 246 (564)
.+...+ ..+.+ ...+.+|||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 000000 00111 2346677777
Q ss_pred cHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
++..++.+++.|.+.. +.....+||++++++|.++++.|++ +|..+|||||+++++|||+| +++||+
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEEEC-----------CEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceEEEEEcCchhcCCCchhCCEEEE
Confidence 8999999999997751 2245677889999999999999997 36789999999999999998 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.+...|.||+|| ||.++ |.|+.+..++
T Consensus 478 ~d~---------p~s~~~~~Qr~GR-gR~~~----g~~~~l~~~~ 508 (556)
T 4a2p_A 478 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 508 (556)
T ss_dssp ETC---------CSCHHHHHHC-------------CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCc
Confidence 999 6699999999999 99955 8999987765
No 35
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=9.6e-31 Score=286.20 Aligned_cols=280 Identities=16% Similarity=0.126 Sum_probs=175.8
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-----CCCEEEEccHHHHHHHHHHHHHhc----C
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----SSSGIYCGPLRLLAWEVAKRLNKA----N 125 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~-----~~~~li~~P~r~La~q~~~~l~~~----g 125 (564)
-.|++.|. +++.+ ++++++++.+|||||||++++..+ .. .++++|++|+++|+.|+++.+.++ |
T Consensus 3 ~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 3 LKPRNYQLELALPA--KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHH--hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 36888999 99988 568999999999999999975444 33 568899999999999999999865 8
Q ss_pred CeeEEEeCccccccC------CCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHHhccC----
Q 008489 126 VSCDLITGQEREEVD------GAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC---- 186 (564)
Q Consensus 126 ~~~~~~~G~~~~~~~------~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~---- 186 (564)
+.+..++|+...... +..++++||+.+. .+.++++|||||||++... +. +..++....
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN--HP-YNQIMFRYLDHKL 157 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT--CH-HHHHHHHHHHHHT
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc--ch-HHHHHHHHHHhhh
Confidence 999999998754432 5789999996652 4678999999999999754 32 333221111
Q ss_pred ----ccceEEEccCCCc------------hHHHHHHHHcCCc-eEE-------------------EeecccCCC------
Q 008489 187 ----ANELHLCGDPAAV------------PLIQQILQVTGDD-VKV-------------------QSYERLSPL------ 224 (564)
Q Consensus 187 ----~~~~~l~~~~~~~------------~~~~~l~~~~g~~-~~v-------------------~~~~~~~~~------ 224 (564)
....++++.+++. ..+..+....+.. +.. ..+....+.
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 1223455544444 2222333333311 110 000000000
Q ss_pred --------------------------C---C-------------------------------------------------
Q 008489 225 --------------------------V---P------------------------------------------------- 226 (564)
Q Consensus 225 --------------------------~---~------------------------------------------------- 226 (564)
. .
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0
Q ss_pred ---------------------------------------------------CCcc---c-ccccc----ccCCCeEEEc-
Q 008489 227 ---------------------------------------------------LNVP---L-GSFSN----IQTGDCIVTF- 246 (564)
Q Consensus 227 ---------------------------------------------------~~~~---l-~~l~~----~~~g~~iv~~- 246 (564)
.... + ..+.+ ...+.+|||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 0000 0 00001 1346778887
Q ss_pred cHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
++..++.+++.|...+ +.....+||+|++++|.++++.|++ +|+.+|||||+++++|||+| +++||+
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA-SGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc-CCCeeEEEEcchhhcCCccccCCEEEE
Confidence 7999999999998764 2245566779999999999999996 36789999999999999998 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.++..|.||+|| ||... |.|+.+...+
T Consensus 477 ~d~---------p~s~~~~~Qr~GR-gR~~~----g~~~~l~~~~ 507 (555)
T 3tbk_A 477 YEY---------VGNVIKMIQTRGR-GRARD----SKCFLLTSSA 507 (555)
T ss_dssp ESC---------CSSCCCEECSSCC-CTTTS----CEEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCc-CcCCC----ceEEEEEcCC
Confidence 998 6699999999999 99844 9999997765
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=7.6e-31 Score=290.77 Aligned_cols=278 Identities=17% Similarity=0.167 Sum_probs=180.9
Q ss_pred CCCCccc------cchHHH----hcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcC
Q 008489 61 DLTRPHT------WYPLAR----KKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKAN 125 (564)
Q Consensus 61 ~~~~~q~------~~p~~~----~~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~g 125 (564)
.++++|+ ++|.+. ..++++++++||||||||++++..++ .+.+++|++|||+||.|+++++..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7888887 555552 12799999999999999999744433 34689999999999999999998765
Q ss_pred CeeEEEeCccc-cccCCCceEEEcceecc-------ccCcccEEEEccccccCCCCCcchHHHHHhccC-ccceEEEccC
Q 008489 126 VSCDLITGQER-EEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDP 196 (564)
Q Consensus 126 ~~~~~~~G~~~-~~~~~~~~i~~T~e~~~-------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-~~~~~l~~~~ 196 (564)
+. ...+... ....+..+..++...+. .+.+++++||||+|++... +......+.... ....+++..+
T Consensus 295 i~--~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~--~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 295 VR--YLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPA--SIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp CE--ECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHH--HHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ee--eecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCcc--HHHHHHHHHHhccccCCcEEEEc
Confidence 43 2222211 11112223333332221 3688999999999998211 101111111111 1345555555
Q ss_pred CCch-HHHHHHHHcCCceEEEeecccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCC
Q 008489 197 AAVP-LIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLP 274 (564)
Q Consensus 197 ~~~~-~~~~l~~~~g~~~~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~ 274 (564)
++.+ .+..+ .....++.......+.......+..+.+ ..+.++||+ ++++++.+++.|++.+. .+..+||+
T Consensus 371 AT~~~~i~~~---~~~~~~i~~v~~~~~~~~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~-~v~~lHg~-- 443 (673)
T 2wv9_A 371 ATPPGTSDPF---PDTNSPVHDVSSEIPDRAWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGK-RVIQLNRK-- 443 (673)
T ss_dssp SSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECSS--
T ss_pred CCCChhhhhh---cccCCceEEEeeecCHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCC-eEEEeChH--
Confidence 5543 11111 1111222222212222222233333333 466788887 89999999999998865 89999994
Q ss_pred HHHHHHHHHHHhCCCCCeeEEEeccccccccccCccEEEecCccc-----cCCc------cccccCHhhHHhhhccCCCC
Q 008489 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGV------ELRDLTVPEVKQIAGRAGRY 343 (564)
Q Consensus 275 ~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~~VI~~~~~k-----~~~~------~~~p~s~~~~~Qr~GRaGR~ 343 (564)
+|.++++.|++ |+.+|||||+++++|||+|+++||+++... ||.. -..|.|.++|.||+||+||.
T Consensus 444 --eR~~v~~~F~~--g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 444 --SYDTEYPKCKN--GDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp --SHHHHGGGGGT--CCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred --HHHHHHHHHHC--CCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 78899999999 999999999999999999999999976422 2322 23588999999999999999
Q ss_pred -CCCCCcEEEEEec
Q 008489 344 -GSKFPVGEVTCLD 356 (564)
Q Consensus 344 -g~~~~~G~~~~l~ 356 (564)
|.. |.|+.++
T Consensus 520 ~g~~---G~ai~l~ 530 (673)
T 2wv9_A 520 PSQI---GDEYHYG 530 (673)
T ss_dssp SSCC---CEEEEEC
T ss_pred CCCC---CEEEEEE
Confidence 555 8998885
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=6.3e-30 Score=274.02 Aligned_cols=280 Identities=20% Similarity=0.167 Sum_probs=193.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhc-CC---eeE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKA-NV---SCD 129 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~-g~---~~~ 129 (564)
..|++.|. +++.+.. + ++++.+|||+|||++++..+. ..++++|++|+++|+.|+++.+.++ |. .+.
T Consensus 8 ~~l~~~Q~~~i~~~~~--~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE--T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HCCCHHHHHHHHHGGG--S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCccHHHHHHHHHHhh--C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 36888888 8888743 5 999999999999999865543 3678999999999999999999975 66 888
Q ss_pred EEeCccccc-----cCCCceEEEcceecc--------ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccC
Q 008489 130 LITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196 (564)
Q Consensus 130 ~~~G~~~~~-----~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~ 196 (564)
.++|+.... ..+..++++|++.+. .+.++++||+||||.+.+..........+.... ...++++.+
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~-~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA-KNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC-SSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC-CCCeEEEEe
Confidence 888875432 125789999997652 257899999999999975311111122222211 122223322
Q ss_pred CCc----hHHHHHHHHcCCceEEE--------------------eeccc---------------------------CCC-
Q 008489 197 AAV----PLIQQILQVTGDDVKVQ--------------------SYERL---------------------------SPL- 224 (564)
Q Consensus 197 ~~~----~~~~~l~~~~g~~~~v~--------------------~~~~~---------------------------~~~- 224 (564)
++. ..+..+....+...... ..... .+.
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 222 23334444333211000 00000 000
Q ss_pred ---C----------------------------------------------------------------------------
Q 008489 225 ---V---------------------------------------------------------------------------- 225 (564)
Q Consensus 225 ---~---------------------------------------------------------------------------- 225 (564)
.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0
Q ss_pred ----------------CCC---ccc-ccccc----ccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcC--------C
Q 008489 226 ----------------PLN---VPL-GSFSN----IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG--------S 272 (564)
Q Consensus 226 ----------------~~~---~~l-~~l~~----~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg--------~ 272 (564)
... ..+ ..+.+ ...+.+|||+ ++..++.+++.|.+.+. .+..+|| +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~~~~ 402 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-KAKRFVGQASKENDRG 402 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-CEEEECCSSCC-----
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-CcEEEecccccccccc
Confidence 000 000 11111 2456677777 79999999999998866 8999999 9
Q ss_pred CCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEE
Q 008489 273 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (564)
Q Consensus 273 l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~ 351 (564)
++.++|.++++.|++ |..+|||||+++++|+|+| +++||+++. |.++..+.||+|||||.|+ |.
T Consensus 403 ~~~~~r~~~~~~F~~--~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~---------~~~~~~~~Qr~GR~~R~g~----g~ 467 (494)
T 1wp9_A 403 LSQREQKLILDEFAR--GEFNVLVATSVGEEGLDVPEVDLVVFYEP---------VPSAIRSIQRRGRTGRHMP----GR 467 (494)
T ss_dssp --CCHHHHHHHHHHH--TSCSEEEECGGGGGGGGSTTCCEEEESSC---------CHHHHHHHHHHTTSCSCCC----SE
T ss_pred CCHHHHHHHHHHHhc--CCceEEEECCccccCCCchhCCEEEEeCC---------CCCHHHHHHHHhhccCCCC----ce
Confidence 999999999999999 8899999999999999998 999999998 5689999999999999998 88
Q ss_pred EEEecCCC
Q 008489 352 VTCLDSED 359 (564)
Q Consensus 352 ~~~l~~~~ 359 (564)
++.+...+
T Consensus 468 ~~~l~~~~ 475 (494)
T 1wp9_A 468 VIILMAKG 475 (494)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 88886654
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=293.59 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=180.7
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------C----CCEEEEccHHHHHHHH-HHHHHhcC--
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------S----SSGIYCGPLRLLAWEV-AKRLNKAN-- 125 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~------~----~~~li~~P~r~La~q~-~~~l~~~g-- 125 (564)
..|++.|. +++.+ +.++++++.+|||||||++++..+.. . +++||++|+++|+.|+ ++++++++
T Consensus 6 ~~l~~~Q~~~i~~i--l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPA--LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHH--HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHH--HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 46889999 99988 45899999999999999998655533 2 7899999999999999 99998653
Q ss_pred -CeeEEEeCcccccc------CCCceEEEcceecc--------------ccCcccEEEEccccccCCCCCcch-HHHHHh
Q 008489 126 -VSCDLITGQEREEV------DGAKHRAVTVEMAD--------------VVSDYDCAVIDEIQMLGCKTRGFS-FTRALL 183 (564)
Q Consensus 126 -~~~~~~~G~~~~~~------~~~~~i~~T~e~~~--------------~l~~~~~vViDEaH~~~~~~rg~~-~~~~ll 183 (564)
+.+..++|+..... .+..++++||+.+. .+.++++|||||||++........ ....+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 78999999765432 36889999996653 247899999999999854221111 222211
Q ss_pred cc----C--------ccceEEEccCCCchH------------HHHHHHHcCC-------------------c-eEEEeec
Q 008489 184 GI----C--------ANELHLCGDPAAVPL------------IQQILQVTGD-------------------D-VKVQSYE 219 (564)
Q Consensus 184 ~l----~--------~~~~~l~~~~~~~~~------------~~~l~~~~g~-------------------~-~~v~~~~ 219 (564)
.. . ....++++.+++... +..+....+. . ..+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 10 0 012233443333321 1222221111 0 0111000
Q ss_pred cc----------------------CCCC----------------------------------------------------
Q 008489 220 RL----------------------SPLV---------------------------------------------------- 225 (564)
Q Consensus 220 ~~----------------------~~~~---------------------------------------------------- 225 (564)
.. .|..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000
Q ss_pred ---------------------------------------------------------CCCccc-ccccc----cc-CCCe
Q 008489 226 ---------------------------------------------------------PLNVPL-GSFSN----IQ-TGDC 242 (564)
Q Consensus 226 ---------------------------------------------------------~~~~~l-~~l~~----~~-~g~~ 242 (564)
.+...+ ..+.+ .. .+.+
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 000011 11111 12 5677
Q ss_pred EEEc-cHHHHHHHHHHHHHc------CCCeEEEEcCC--------CCHHHHHHHHHHHhCCCCCeeEEEecccccccccc
Q 008489 243 IVTF-SRHAIYRLKKAIESR------GKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (564)
Q Consensus 243 iv~~-s~~~~~~l~~~L~~~------~~~~v~~lhg~--------l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldi 307 (564)
|||+ +++.++.+++.|.+. +. .+..+||+ |++++|.++++.|++ |+.+|||||+++++|||+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~-~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGV-KAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--GKINLLIATTVAEEGLDI 480 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCCTTSCC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCc-ceEEEECCCCccCCCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCcc
Confidence 8877 899999999999876 44 79999999 999999999999999 999999999999999999
Q ss_pred C-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCC
Q 008489 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345 (564)
Q Consensus 308 p-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~ 345 (564)
| +++||+++. |.|..+|.||+|||||.|.
T Consensus 481 p~v~~VI~~d~---------p~s~~~~~Qr~GRArr~g~ 510 (699)
T 4gl2_A 481 KECNIVIRYGL---------VTNEIAMVQARGRARADES 510 (699)
T ss_dssp CSCCCCEEESC---------CCCHHHHHHHHTTSCSSSC
T ss_pred ccCCEEEEeCC---------CCCHHHHHHHcCCCCCCCc
Confidence 8 999999999 6699999999999988763
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=1.2e-30 Score=277.34 Aligned_cols=263 Identities=17% Similarity=0.162 Sum_probs=162.6
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc-cCCCceEEEc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE-VDGAKHRAVT 148 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~-~~~~~~i~~T 148 (564)
+++++++++||||||||++++..++ .+.+++|++||++||.|+++.+..+++ ...++..... ..+.-+..++
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v--~~~~~~~~~v~Tp~~l~~~l~ 83 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV--KFHTQAFSAHGSGREVIDAMC 83 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE--EEESSCCCCCCCSSCCEEEEE
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe--EEecccceeccCCccceeeec
Confidence 5689999999999999999754443 245899999999999999999986543 3333321111 1111111222
Q ss_pred ceecc-------ccCcccEEEEccccccCCCCCcchHH-HHHhc-cCccceEEEccCCCch-HHHHHHHHcCCceEEEee
Q 008489 149 VEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFT-RALLG-ICANELHLCGDPAAVP-LIQQILQVTGDDVKVQSY 218 (564)
Q Consensus 149 ~e~~~-------~l~~~~~vViDEaH~~~~~~rg~~~~-~~ll~-l~~~~~~l~~~~~~~~-~~~~l~~~~g~~~~v~~~ 218 (564)
...+. .+.+++++||||+|++ +. ++... ..+.. +.....+++..+++.+ ....+....+. +...
T Consensus 84 ~~~l~~~~~~~~~~~~l~~vViDEah~~-~~--~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~---~~~~ 157 (440)
T 1yks_A 84 HATLTYRMLEPTRVVNWEVIIMDEAHFL-DP--ASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGE---IEDV 157 (440)
T ss_dssp HHHHHHHHTSSSCCCCCSEEEETTTTCC-SH--HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSC---EEEE
T ss_pred ccchhHhhhCcccccCccEEEEECcccc-Cc--chHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCC---eeEe
Confidence 11111 2688999999999998 21 21111 11111 1123445555555542 22112221111 1111
Q ss_pred cccCCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEe
Q 008489 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (564)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa 297 (564)
....+.......+..+.+ .++.++||+ ++++++.+++.|++.+. .+..+|| ++|.++++.|++ |+.+||||
T Consensus 158 ~~~~~~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~-~v~~lhg----~~R~~~~~~F~~--g~~~vLVa 229 (440)
T 1yks_A 158 QTDIPSEPWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGK-SVVVLNR----KTFEREYPTIKQ--KKPDFILA 229 (440)
T ss_dssp ECCCCSSCCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEECCS----SSCC----------CCCSEEEE
T ss_pred eeccChHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCC-CEEEecc----hhHHHHHhhhcC--CCceEEEE
Confidence 112222222222333333 356777777 89999999999998865 8999999 357789999999 99999999
Q ss_pred ccccccccccCccEEEecCccc-----cCCc-----cccccCHhhHHhhhccCCCC-CCCCCcEEEEEec
Q 008489 298 SDAIGMGLNLNISRIIFSTMKK-----FDGV-----ELRDLTVPEVKQIAGRAGRY-GSKFPVGEVTCLD 356 (564)
Q Consensus 298 T~~~~~Gldipv~~VI~~~~~k-----~~~~-----~~~p~s~~~~~Qr~GRaGR~-g~~~~~G~~~~l~ 356 (564)
|+++++|||+|+++||+++..+ +++. ...|.+.++|.||+||+||. |.. |.|+.++
T Consensus 230 T~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~---g~~~~l~ 296 (440)
T 1yks_A 230 TDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD---GDSYYYS 296 (440)
T ss_dssp SSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC---CEEEEEC
T ss_pred CChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC---ceEEEEe
Confidence 9999999999999999865433 1111 23478999999999999997 455 9999885
No 40
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=3.3e-30 Score=273.41 Aligned_cols=265 Identities=16% Similarity=0.137 Sum_probs=171.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccc-ccCCCceEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVTV 149 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~-~~~~~~~i~~T~ 149 (564)
++++++++||||||||++++..++ .+.+++|++||++||.|+++.+. |..+.+.+|.... ...+..+.++|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccccCCCCceEEEEch
Confidence 378999999999999999744333 44689999999999999999886 6677777775332 223445556665
Q ss_pred eecc-------ccCcccEEEEccccccCCCCCcchHHHHHhcc-CccceEEEccCCCchHHHHHHHHcCCceEEEeeccc
Q 008489 150 EMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221 (564)
Q Consensus 150 e~~~-------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l-~~~~~~l~~~~~~~~~~~~l~~~~g~~~~v~~~~~~ 221 (564)
..+. .+.++++|||||+|++... +......+... .....+++..+++.+.. +........++......
T Consensus 79 ~~l~~~l~~~~~~~~l~~vViDEaH~~~~~--~~~~~~~l~~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~i~~~~~~ 154 (431)
T 2v6i_A 79 STFTMKLLQGVRVPNYNLYIMDEAHFLDPA--SVAARGYIETRVSMGDAGAIFMTATPPGT--TEAFPPSNSPIIDEETR 154 (431)
T ss_dssp HHHHHHHHHTCCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHTTSCEEEEEESSCTTC--CCSSCCCSSCCEEEECC
T ss_pred HHHHHHHhcCccccCCCEEEEeCCccCCcc--HHHHHHHHHHHhhCCCCcEEEEeCCCCcc--hhhhcCCCCceeecccc
Confidence 4321 2688999999999998311 11112222222 12345555555554321 11111111111111111
Q ss_pred CCCCCCCccccccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccc
Q 008489 222 SPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (564)
Q Consensus 222 ~~~~~~~~~l~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~ 300 (564)
.+.......+..+.+ ..+.++||+ ++++++.+++.|++.+. .+..+||+ +|.++++.|++ |+.+|||||++
T Consensus 155 ~~~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~----~r~~~~~~f~~--g~~~vLVaT~v 226 (431)
T 2v6i_A 155 IPDKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGK-KVLYLNRK----TFESEYPKCKS--EKWDFVITTDI 226 (431)
T ss_dssp CCSSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTC-CEEEESTT----THHHHTTHHHH--SCCSEEEECGG
T ss_pred CCHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCC-eEEEeCCc----cHHHHHHhhcC--CCCeEEEECch
Confidence 122222222222322 466788887 89999999999998865 89999997 56789999999 99999999999
Q ss_pred cccccccCccEEEecCcccc---C-----CccccccCHhhHHhhhccCCCCCCCCCcEEEEEec
Q 008489 301 IGMGLNLNISRIIFSTMKKF---D-----GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (564)
Q Consensus 301 ~~~Gldipv~~VI~~~~~k~---~-----~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~ 356 (564)
+++|+|+|+++||+++..+. | -....|.+.++|.||+||+||.|.. .|.++.+.
T Consensus 227 ~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~--~~~~~~~~ 288 (431)
T 2v6i_A 227 SEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK--LGDIYAYS 288 (431)
T ss_dssp GGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCCEEEEC
T ss_pred HHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC--CCeEEEEc
Confidence 99999999999877654431 1 1123478999999999999999853 14555554
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-30 Score=291.72 Aligned_cols=289 Identities=18% Similarity=0.253 Sum_probs=196.5
Q ss_pred HHHHHhcccCCCccccCCCCCCccc-cchHHHhc----CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHH
Q 008489 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLL 113 (564)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~----~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~L 113 (564)
+.+...++.. ++ .|++.|. +++.+... ...+++++||||||||++++.+++ .+.+++|++||++|
T Consensus 356 ~~~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSL-----PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHS-----SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred HHHHHHHHhC-----CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 4555666666 78 8999999 88887542 125899999999999999865543 46799999999999
Q ss_pred HHHHHHHHHhc----CCeeEEEeCcccccc----------CCCceEEEcceecc---ccCcccEEEEccccccCCCCCcc
Q 008489 114 AWEVAKRLNKA----NVSCDLITGQEREEV----------DGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGF 176 (564)
Q Consensus 114 a~q~~~~l~~~----g~~~~~~~G~~~~~~----------~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~ 176 (564)
|.|+++++.++ |+++..++|+..... ....++++|++.+. .+.++++|||||+|++...++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~- 508 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQRE- 508 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----C-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHH-
Confidence 99999998853 799999999754321 24789999997663 4689999999999998654322
Q ss_pred hHHHHHhccCccceEEEccCCCc-hHHHHHHHHcCC-ceEEEee-c-ccCCCCC-------CCccccccc-cc-cCCCeE
Q 008489 177 SFTRALLGICANELHLCGDPAAV-PLIQQILQVTGD-DVKVQSY-E-RLSPLVP-------LNVPLGSFS-NI-QTGDCI 243 (564)
Q Consensus 177 ~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~g~-~~~v~~~-~-~~~~~~~-------~~~~l~~l~-~~-~~g~~i 243 (564)
.+... ....++++.+++. +..... ...++ ...+... . ...+... ....+..+. .. ..+.++
T Consensus 509 ----~l~~~-~~~~~vL~mSATp~p~tl~~-~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 509 ----ALMNK-GKMVDTLVMSATPIPRSMAL-AFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp ----CCCSS-SSCCCEEEEESSCCCHHHHH-HHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred ----HHHHh-CCCCCEEEEeCCCCHHHHHH-HHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEE
Confidence 11111 1233444444442 222111 22332 1111110 0 0001100 000111111 11 234555
Q ss_pred EEc-cH--------HHHHHHHHHHHH-c-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccE
Q 008489 244 VTF-SR--------HAIYRLKKAIES-R-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (564)
Q Consensus 244 v~~-s~--------~~~~~l~~~L~~-~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~ 311 (564)
||+ +. ..++.+++.|.+ . ....+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| +++
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~--G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--GRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--TSSSBCCCSSCCCSCSCCTTCCE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEECCCCCccccCCCCCE
Confidence 555 22 346777888876 2 23479999999999999999999999 9999999999999999998 999
Q ss_pred EEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 312 VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
||+++.++ .+.+++.||+||+||.|.. |.|+.++.
T Consensus 661 VIi~d~~r--------~~l~~l~Qr~GRaGR~g~~---g~~ill~~ 695 (780)
T 1gm5_A 661 MVIENPER--------FGLAQLHQLRGRVGRGGQE---AYCFLVVG 695 (780)
T ss_dssp EEBCSCSS--------SCTTHHHHHHHTSCCSSTT---CEEECCCC
T ss_pred EEEeCCCC--------CCHHHHHHHhcccCcCCCC---CEEEEEEC
Confidence 99998743 3678999999999999987 99999876
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=7.5e-30 Score=291.12 Aligned_cols=283 Identities=16% Similarity=0.154 Sum_probs=159.2
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-----CCCEEEEccHHHHHHHHHHHHHhc--
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA-- 124 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~-----~~~~li~~P~r~La~q~~~~l~~~-- 124 (564)
+|+..|+++|. +++.+ ++++++++++|||||||++++..+. . .+++||++|+++|+.|+++.++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~--l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHH--HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 36889999999 99988 5689999999999999999754443 2 568899999999999999999865
Q ss_pred --CCeeEEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHHhccC-
Q 008489 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC- 186 (564)
Q Consensus 125 --g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~- 186 (564)
|+.+..++|+..... .+..++++||+.+. .+.++++|||||||++... +. +..++..+.
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~--~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLE 398 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT--SH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC--cc-HHHHHHHHHH
Confidence 899999999874432 36789999996652 4577899999999999864 22 332221111
Q ss_pred ------ccceEEEccCCCc------------hHHHHHHHHcCCce--------------------EEEeecc-c-CC---
Q 008489 187 ------ANELHLCGDPAAV------------PLIQQILQVTGDDV--------------------KVQSYER-L-SP--- 223 (564)
Q Consensus 187 ------~~~~~l~~~~~~~------------~~~~~l~~~~g~~~--------------------~v~~~~~-~-~~--- 223 (564)
....++++.+++. ..+..+....+... ....+.. . .+
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2223445544444 22333332222110 0000000 0 00
Q ss_pred ------------------------C-----CC------------------------------------------------
Q 008489 224 ------------------------L-----VP------------------------------------------------ 226 (564)
Q Consensus 224 ------------------------~-----~~------------------------------------------------ 226 (564)
. ..
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00
Q ss_pred ----------------------------------------------------CCcc---c-ccccc----ccCCCeEEEc
Q 008489 227 ----------------------------------------------------LNVP---L-GSFSN----IQTGDCIVTF 246 (564)
Q Consensus 227 ----------------------------------------------------~~~~---l-~~l~~----~~~g~~iv~~ 246 (564)
.... + ..+.+ ...+.+|||+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0000 0 00111 2346677777
Q ss_pred -cHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 247 -SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 247 -s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
+++.++.+++.|++.. +.....+||++++++|..+++.|++ +|..+|||||+++++|||+| +++||
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~-~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc-cCCceEEEEcCchhcCCCchhCCEEE
Confidence 8999999999998741 2256778999999999999999997 36789999999999999998 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++. |.|...|+||+|| ||..+ |.|+.+....
T Consensus 718 ~yd~---------p~s~~~~iQr~GR-GR~~~----g~~i~l~~~~ 749 (797)
T 4a2q_A 718 LYEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (797)
T ss_dssp EESC---------CSCHHHHHTC--------C----CCEEEEECCH
T ss_pred EeCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCC
Confidence 9999 6699999999999 99955 9999997654
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=7.1e-30 Score=274.53 Aligned_cols=271 Identities=19% Similarity=0.146 Sum_probs=192.2
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCe-eEEEeCcccc
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQERE 137 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~-~~~~~G~~~~ 137 (564)
.|++.|. +++.+ .+++++++++|||||||++++..+.. +++++|++|+++|+.|+++++.++|++ ++.++|+...
T Consensus 93 ~l~~~Q~~ai~~i--~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 93 SLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp CBCHHHHHHHHHH--TTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred CcCHHHHHHHHHH--HhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 6888898 88877 45778999999999999998766654 578999999999999999999999999 9999987654
Q ss_pred ccCCCceEEEcceeccc-----cCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCch------------
Q 008489 138 EVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP------------ 200 (564)
Q Consensus 138 ~~~~~~~i~~T~e~~~~-----l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~------------ 200 (564)
...++++|++.+.. ..++++|||||+|++.+. ++ ..++-.+.+. ++++.+++..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~--~~--~~~~~~~~~~--~~l~lSATp~~~~~~~~~l~~~ 241 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE--SY--VQIAQMSIAP--FRLGLTATFEREDGRHEILKEV 241 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTST--TT--HHHHHTCCCS--EEEEEESCCCCTTSGGGSHHHH
T ss_pred ---cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCCh--HH--HHHHHhcCCC--eEEEEecCccCCCCHHHHHHHH
Confidence 47899999966522 266999999999999864 33 2333223322 2233233321
Q ss_pred --------HHHHHHHHcCCceEEEeec-ccCC--------------------------CCCCC-----------------
Q 008489 201 --------LIQQILQVTGDDVKVQSYE-RLSP--------------------------LVPLN----------------- 228 (564)
Q Consensus 201 --------~~~~l~~~~g~~~~v~~~~-~~~~--------------------------~~~~~----------------- 228 (564)
....+.........+.... ...+ .....
T Consensus 242 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 242 VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALR 321 (472)
T ss_dssp TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTH
T ss_pred hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHH
Confidence 1112211101111111000 0000 00000
Q ss_pred ----------------ccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCC
Q 008489 229 ----------------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290 (564)
Q Consensus 229 ----------------~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g 290 (564)
..+ ..+.....+.++||+ +++.++.+++.| .+..+||+++.++|.++++.|++ |
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l------~~~~~~g~~~~~~R~~~~~~F~~--g 393 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF------LIPAITHRTSREEREEILEGFRT--G 393 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT------TCCBCCSSSCSHHHHTHHHHHHH--S
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh------CcceeeCCCCHHHHHHHHHHHhC--C
Confidence 000 011222355677777 789999998887 36789999999999999999999 9
Q ss_pred CeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 291 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 291 ~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+.+|||||+++++|+|+| +++||+++. |.+...+.||+||+||.|+++....+|.+..++
T Consensus 394 ~~~vLv~T~~~~~Gldlp~~~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 394 RFRAIVSSQVLDEGIDVPDANVGVIMSG---------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SCSBCBCSSCCCSSSCSCCBSEEEEECC---------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCEEEEcCchhcCcccccCcEEEEECC---------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999998 999999988 569999999999999999643567888886644
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=1.6e-29 Score=274.33 Aligned_cols=280 Identities=15% Similarity=0.058 Sum_probs=193.8
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C-CCEEEEccHHHHHHHHHHHHHhcC----Cee
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S-SSGIYCGPLRLLAWEVAKRLNKAN----VSC 128 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----~-~~~li~~P~r~La~q~~~~l~~~g----~~~ 128 (564)
...|++.|. +++.+.. ++++++++|||||||++++..+.. . ++++|++|+++|+.|+++++.+++ ..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHH--HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCCCHHHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 347899999 9988854 689999999999999998654432 3 489999999999999999999762 467
Q ss_pred EEEeCcccccc---CCCceEEEcceecc-----ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCch
Q 008489 129 DLITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 200 (564)
Q Consensus 129 ~~~~G~~~~~~---~~~~~i~~T~e~~~-----~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~ 200 (564)
..++|+..... .+..++++|++.+. .+.++++|||||+|++... .+..++-.+.. ...+++.++|.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~----~~~~il~~~~~-~~~~l~lSATp~ 263 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK----SISSIISGLNN-CMFKFGLSGSLR 263 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHH----HHHHHGGGCTT-CCEEEEEESCGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcc----cHHHHHHhccc-CcEEEEEEeCCC
Confidence 77777654332 46789999996542 3688999999999998742 34444444422 334444444432
Q ss_pred H----HHHHHHHcCCceE-----------------EEeecccCCC--------CCCCc-------------cc-cccccc
Q 008489 201 L----IQQILQVTGDDVK-----------------VQSYERLSPL--------VPLNV-------------PL-GSFSNI 237 (564)
Q Consensus 201 ~----~~~l~~~~g~~~~-----------------v~~~~~~~~~--------~~~~~-------------~l-~~l~~~ 237 (564)
. ...+....+..+. +.......+. ..... .+ ..+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 264 DGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKL 343 (510)
T ss_dssp GCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1122222222110 0000000000 00000 00 111111
Q ss_pred --cCCCe-EEEccHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEec-cccccccccC-ccEE
Q 008489 238 --QTGDC-IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRI 312 (564)
Q Consensus 238 --~~g~~-iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT-~~~~~Gldip-v~~V 312 (564)
..+.. +||.+.++++.+++.|.+.+. .+..+||++++++|.++++.|++ |+.+||||| +++++|+|+| +++|
T Consensus 344 ~~~~~~~~ivf~~~~~~~~l~~~L~~~~~-~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYD-KVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HTTTCEEEEEESSHHHHHHHHHHHHTTCS-SEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEE
T ss_pred HhcCCCeEEEEecHHHHHHHHHHHHHcCC-CeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEE
Confidence 23444 445578899999999998876 89999999999999999999998 899999999 9999999998 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
|+++. |.+..++.||+||+||.|++.....++.+.+
T Consensus 421 i~~~~---------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 421 VLAHG---------VKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp EESSC---------CCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred EEeCC---------CCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 99988 5589999999999999998632344555443
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=7.1e-29 Score=288.87 Aligned_cols=244 Identities=15% Similarity=0.148 Sum_probs=164.8
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhc----CC-
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKA----NV- 126 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~----g~- 126 (564)
+|+. | ++|. ++|.+ +.+++++++||||||||+.++..+. .+++++|++|||+||.|++++++++ |+
T Consensus 54 ~g~~-p-~iQ~~ai~~i--l~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRI--LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp TCSC-C-HHHHHHHHHH--HTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred cCCC-H-HHHHHHHHHH--HhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 4899 8 9999 99999 5699999999999999984333322 3568999999999999999999853 56
Q ss_pred ---eeEEEeCcccccc--------CCCceEEEcceec----cccCcccEEEEccccccCCCCCcchHHHHH--hccC---
Q 008489 127 ---SCDLITGQEREEV--------DGAKHRAVTVEMA----DVVSDYDCAVIDEIQMLGCKTRGFSFTRAL--LGIC--- 186 (564)
Q Consensus 127 ---~~~~~~G~~~~~~--------~~~~~i~~T~e~~----~~l~~~~~vViDEaH~~~~~~rg~~~~~~l--l~l~--- 186 (564)
.++.++|+..... .+..++++||+.+ ..+.+++++||||||++.+ +|..+..++ +++.
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEET
T ss_pred ccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhh
Confidence 7888888654321 2378999999554 2356899999999999985 566665554 3321
Q ss_pred -------ccceEEEccCCCch--HHHHHHHHc-C-----Cce---EEEeecccCCCCCCCccccccccccCCCeEEEc-c
Q 008489 187 -------ANELHLCGDPAAVP--LIQQILQVT-G-----DDV---KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-S 247 (564)
Q Consensus 187 -------~~~~~l~~~~~~~~--~~~~l~~~~-g-----~~~---~v~~~~~~~~~~~~~~~l~~l~~~~~g~~iv~~-s 247 (564)
.....++..+.+.+ ....+.... . ... .+..+.. + ......+..+.+..++.++||+ +
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~-~~k~~~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV--N-DESISTLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--S-CCCTTTTHHHHTTSCSCEEEEESS
T ss_pred hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEe--c-hhHHHHHHHHHhhcCCCEEEEEcC
Confidence 12234444443332 111222211 0 000 0111111 1 1112222222222246677777 8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEe----ccccccccccC-c-cEEEecCcc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN-I-SRIIFSTMK 318 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa----T~~~~~Gldip-v-~~VI~~~~~ 318 (564)
+++++.+++.|++. ..+..+||++. .+++.|++ |+.+|||| ||++++|||+| | ++||+++.+
T Consensus 285 ~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 285 GEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVE--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHH--TSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHc--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99999999999877 58999999984 67889999 99999999 99999999997 6 999999998
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=7.8e-29 Score=286.10 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=158.9
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc---------CCCEEEEccHHHHHHHHHHHHHhc---
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES---------SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~---------~~~~li~~P~r~La~q~~~~l~~~--- 124 (564)
+...|++.|. +++.+ ++++++++.+|||||||++++..+.. .++++|++|+++|+.|+++.++++
T Consensus 245 ~~~~~r~~Q~~ai~~i--l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ---CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5788999999 99988 56899999999999999998766643 467899999999999999998864
Q ss_pred -CCeeEEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEccccccCCCCCcchHHHHHhccC--
Q 008489 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-- 186 (564)
Q Consensus 125 -g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-- 186 (564)
++.+..++|+..... .+..++++||+.+. .+.++++|||||||++... +. +..++..+.
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~--~~-~~~i~~~~~~~ 399 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 399 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT--CH-HHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC--cc-HHHHHHHHHHH
Confidence 899999999874432 25789999996652 3567899999999999754 22 332221111
Q ss_pred -----ccceEEEccCCCc------------hHHHHHHHHcCCc--------------------eEEEeecc-cC------
Q 008489 187 -----ANELHLCGDPAAV------------PLIQQILQVTGDD--------------------VKVQSYER-LS------ 222 (564)
Q Consensus 187 -----~~~~~l~~~~~~~------------~~~~~l~~~~g~~--------------------~~v~~~~~-~~------ 222 (564)
....++++.+++. ..+..+....+.. .....+.. ..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1223344444333 1222222221110 00000000 00
Q ss_pred ------------------------CCC---C-------------------------------------------------
Q 008489 223 ------------------------PLV---P------------------------------------------------- 226 (564)
Q Consensus 223 ------------------------~~~---~------------------------------------------------- 226 (564)
+.. .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0
Q ss_pred ---------------------------------------------------CCcc---c-cccc----cccCCCeEEEc-
Q 008489 227 ---------------------------------------------------LNVP---L-GSFS----NIQTGDCIVTF- 246 (564)
Q Consensus 227 ---------------------------------------------------~~~~---l-~~l~----~~~~g~~iv~~- 246 (564)
.... + ..+. ....+.+|||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000 0 0111 12345677777
Q ss_pred cHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
+++.++.+++.|.+.. +.....+||+|++.+|.++++.|++ +|..+|||||+++++|||+| +++||+
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~-~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-cCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 8999999999998761 2246677999999999999999996 36789999999999999998 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.|...|+||+|| ||.+. |.|+.+....
T Consensus 719 yD~---------p~s~~~~iQr~GR-GR~~~----g~vi~Li~~~ 749 (936)
T 4a2w_A 719 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (936)
T ss_dssp ESC---------CSCSHHHHCC--------C----CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----CEEEEEEeCC
Confidence 999 6699999999999 99965 8888887654
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=4.2e-28 Score=284.03 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=195.8
Q ss_pred ccCCCCCCccc-cchHHHhc--CCc--eEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHh----
Q 008489 57 FDFTDLTRPHT-WYPLARKK--VRK--VILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~--~~~--~viv~apTGsGKT~~~~~~----l~~~~~~li~~P~r~La~q~~~~l~~---- 123 (564)
+++. +++.|. +++.+... +++ +++++||||||||++++.+ +..+++++|++||++||.|+++++.+
T Consensus 600 f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 600 FPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 3665 699999 99888642 233 9999999999999997533 34566889999999999999999984
Q ss_pred cCCeeEEEeCccccc----------cCCCceEEEcceecc---ccCcccEEEEccccccCCCCCcchHHHHHhccCccce
Q 008489 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (564)
Q Consensus 124 ~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~---~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~ 190 (564)
.++.+..++|..... .....++++|++++. .+.+++++||||+|++. ......+..+.. ..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~~-~~ 752 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG-----VRHKERIKAMRA-NV 752 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC-----HHHHHHHHHHHT-TS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcC-----hHHHHHHHHhcC-CC
Confidence 367888887753221 125789999997663 36889999999999964 333344433333 34
Q ss_pred EEEccCCC-chHHHHHHHHcCCceEEEeecccCCCCCC-------Ccc-cc-ccccc-cCCCeEEEc-cHHHHHHHHHHH
Q 008489 191 HLCGDPAA-VPLIQQILQVTGDDVKVQSYERLSPLVPL-------NVP-LG-SFSNI-QTGDCIVTF-SRHAIYRLKKAI 258 (564)
Q Consensus 191 ~l~~~~~~-~~~~~~l~~~~g~~~~v~~~~~~~~~~~~-------~~~-l~-~l~~~-~~g~~iv~~-s~~~~~~l~~~L 258 (564)
++++.++| .+.........-....+............ ... .. .+... .++.++||+ ++++++.+++.|
T Consensus 753 ~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L 832 (1151)
T 2eyq_A 753 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 832 (1151)
T ss_dssp EEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHH
T ss_pred CEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 44444444 33322222111111111110000000000 000 00 11112 345566666 688999999999
Q ss_pred HHcC-CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhh
Q 008489 259 ESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQI 336 (564)
Q Consensus 259 ~~~~-~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr 336 (564)
++.. ..++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| +++||+++... .+.+++.||
T Consensus 833 ~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~--------~~l~~l~Qr 902 (1151)
T 2eyq_A 833 AELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERADH--------FGLAQLHQL 902 (1151)
T ss_dssp HHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEEESSTTGGGSCCTTEEEEEETTTTS--------SCHHHHHHH
T ss_pred HHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEECCcceeeecccCCcEEEEeCCCC--------CCHHHHHHH
Confidence 8862 3489999999999999999999999 9999999999999999998 99999876632 368899999
Q ss_pred hccCCCCCCCCCcEEEEEecCCC
Q 008489 337 AGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 337 ~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+||+||.|.. |+||.+++.+
T Consensus 903 ~GRvgR~g~~---g~~~ll~~~~ 922 (1151)
T 2eyq_A 903 RGRVGRSHHQ---AYAWLLTPHP 922 (1151)
T ss_dssp HTTCCBTTBC---EEEEEEECCG
T ss_pred HhccCcCCCc---eEEEEEECCc
Confidence 9999999977 9999998754
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=6.5e-29 Score=289.19 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=171.0
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHh---cCCeeE
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK---ANVSCD 129 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~---~g~~~~ 129 (564)
++ .|+++|+ ++|.+ +++++++++||||||||++++..+. .+++++|++|||+||.|+++++++ .|+.+.
T Consensus 76 gf-~pt~iQ~~ai~~i--l~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIF 152 (1104)
T ss_dssp SS-CCCHHHHHHHHHH--TTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEE
T ss_pred CC-CCCHHHHHHHHHH--HcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEE
Confidence 66 6999999 99998 6699999999999999998654433 467899999999999999999998 467899
Q ss_pred EEeCccccc---------c-CCCceEEEcceec-cc-----cCcccEEEEccccccCCCC---------CcchHH--HHH
Q 008489 130 LITGQEREE---------V-DGAKHRAVTVEMA-DV-----VSDYDCAVIDEIQMLGCKT---------RGFSFT--RAL 182 (564)
Q Consensus 130 ~~~G~~~~~---------~-~~~~~i~~T~e~~-~~-----l~~~~~vViDEaH~~~~~~---------rg~~~~--~~l 182 (564)
.++|+.... . ...+++++||+.+ +. +.+++++||||||++.... +|+... ..+
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 999976541 1 2478999999765 33 5889999999999887532 344322 223
Q ss_pred hccCc-----------cceEEEccCCC-ch--HHHHHHHHcCC-ce--------EEEeecccCCCCCCCccc-ccccccc
Q 008489 183 LGICA-----------NELHLCGDPAA-VP--LIQQILQVTGD-DV--------KVQSYERLSPLVPLNVPL-GSFSNIQ 238 (564)
Q Consensus 183 l~l~~-----------~~~~l~~~~~~-~~--~~~~l~~~~g~-~~--------~v~~~~~~~~~~~~~~~l-~~l~~~~ 238 (564)
+.... ...+++..+++ .+ ....+....-. .. .+....... .....+ ..+.. .
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~ 308 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS---RSKEKLVELLEI-F 308 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHH-H
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEec---CHHHHHHHHHHh-c
Confidence 32211 33444444444 22 11112211111 00 011111000 011111 22222 3
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEE-EEcCCCCHHHHHHHHHHHhCCCCCeeEEEe----ccccccccccC--cc
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 310 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~lhg~l~~~~R~~~~~~F~~~~g~~~VlVa----T~~~~~Gldip--v~ 310 (564)
++.+|||+ +++.++.++..|...+. .+. .+||. |.+ ++.|++ |+.+|||| |+++++|||+| |+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~-~~~~~lhg~-----rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF-----EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTC-CEEESSSSH-----HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CeeeEecCc-----HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 46777777 89999999999998876 787 99992 555 999999 99999999 99999999995 79
Q ss_pred EEEecCccc
Q 008489 311 RIIFSTMKK 319 (564)
Q Consensus 311 ~VI~~~~~k 319 (564)
+||+++.++
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999999987
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=4.5e-26 Score=251.66 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=167.2
Q ss_pred CCCCCccc-cchHHHh---cCCceEEEEccCCccHHHHHHHHH---H----------cCCCEEEEccHHHHHHHHH-HHH
Q 008489 60 TDLTRPHT-WYPLARK---KVRKVILHVGPTNSGKTHQALSRL---E----------SSSSGIYCGPLRLLAWEVA-KRL 121 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~---~~~~~viv~apTGsGKT~~~~~~l---~----------~~~~~li~~P~r~La~q~~-~~l 121 (564)
..+++.|. +++.+.. ..++++++++|||||||++++..+ . ..++++|++|+++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 36899998 8887643 135778999999999999975443 2 3467899999999999999 888
Q ss_pred HhcCCeeEEEeCccccccCCCceEEEcceeccc------------cCcccEEEEccccccCCCCCcchHHHHHhccCccc
Q 008489 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189 (564)
Q Consensus 122 ~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~------------l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~ 189 (564)
+.++..+..+.+... ..+..++++|++.+.. ...+++||+||||++.... +..|..++-.+....
T Consensus 257 ~~~~~~~~~~~~~~~--~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~~ 333 (590)
T 3h1t_A 257 TPFGDARHKIEGGKV--VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPAF 333 (590)
T ss_dssp TTTCSSEEECCC--C--CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTSE
T ss_pred HhcchhhhhhhccCC--CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCcce
Confidence 888887777665433 2467899999965532 2568999999999987431 123444443343222
Q ss_pred eEEEccCCCch--HHHHHHHHcCC-----------------ceEEEeecccCCC-----------------C---CCCcc
Q 008489 190 LHLCGDPAAVP--LIQQILQVTGD-----------------DVKVQSYERLSPL-----------------V---PLNVP 230 (564)
Q Consensus 190 ~~l~~~~~~~~--~~~~l~~~~g~-----------------~~~v~~~~~~~~~-----------------~---~~~~~ 230 (564)
+++.+++.. .........+. .+.+......... . .....
T Consensus 334 --~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (590)
T 3h1t_A 334 --QIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKD 411 (590)
T ss_dssp --EEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCS
T ss_pred --EEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHH
Confidence 222222211 11111222222 1111111000000 0 00000
Q ss_pred -----------------c-cccccc-cCCCeEEEc-cHHHHHHHHHHHHHcCC-------CeEEEEcCCCCHHHHHHHHH
Q 008489 231 -----------------L-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYGSLPPETRTRQAT 283 (564)
Q Consensus 231 -----------------l-~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~lhg~l~~~~R~~~~~ 283 (564)
+ ..+... ..+.++||+ +++.++.+++.|.+.+. ..+..+||+++ ++|.++++
T Consensus 412 ~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~ 490 (590)
T 3h1t_A 412 FERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLS 490 (590)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHH
T ss_pred hhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHH
Confidence 0 001111 235667776 89999999999977532 23788999976 47999999
Q ss_pred HHhCCCCCee---EEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCC--CCCcEEEEEec
Q 008489 284 RFNDASSEFD---VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--KFPVGEVTCLD 356 (564)
Q Consensus 284 ~F~~~~g~~~---VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~--~~~~G~~~~l~ 356 (564)
.|++ |+.+ |+|||+++++|+|+| +++||+++. +.|...|.||+||+||.++ ++..+.++-+.
T Consensus 491 ~F~~--~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~---------~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 491 RFQE--LETSTPVILTTSQLLTTGVDAPTCKNVVLARV---------VNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHC--TTCCCCCEEEESSTTTTTCCCTTEEEEEEESC---------CCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHhC--CCCCCCEEEEECChhhcCccchheeEEEEEec---------CCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999 5544 889999999999998 999999988 5599999999999999886 33445666555
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=2e-26 Score=254.24 Aligned_cols=278 Identities=16% Similarity=0.092 Sum_probs=184.8
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCe
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~----~g~~ 127 (564)
.|+ .|+++|. .+|.+ ++|+ |..++||+|||+++...+ +.+..++|++|+|+||.|.++.+.. +|++
T Consensus 80 lG~-~pt~VQ~~~ip~l--l~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~ 154 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVAL--HDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 154 (844)
T ss_dssp HSC-CCCHHHHHHHHHH--HTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC-CCcHHHHHhhHHH--hCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 389 9999999 99988 5577 999999999999974333 3456789999999999999988874 4999
Q ss_pred eEEEeCccccc----cCCCceEEEcceec------c---------ccCcccEEEEccccccC-CCCCc------------
Q 008489 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVSDYDCAVIDEIQMLG-CKTRG------------ 175 (564)
Q Consensus 128 ~~~~~G~~~~~----~~~~~~i~~T~e~~------~---------~l~~~~~vViDEaH~~~-~~~rg------------ 175 (564)
+++++|+.... ..++.|+++||.-+ + .++++.++||||||.+. |..+-
T Consensus 155 v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 99999875322 12578999998332 2 14789999999999986 54221
Q ss_pred -c--hHHHHHhccCc----------cceEE----------------EccCCCc-hHHHHHH---HH---c--CCceEEE-
Q 008489 176 -F--SFTRALLGICA----------NELHL----------------CGDPAAV-PLIQQIL---QV---T--GDDVKVQ- 216 (564)
Q Consensus 176 -~--~~~~~ll~l~~----------~~~~l----------------~~~~~~~-~~~~~l~---~~---~--g~~~~v~- 216 (564)
+ ....++-.+.. +.+.+ +.+ ++. .....+. .. . ...+.+.
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfs-at~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFD-VKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTS-GGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCC-CccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 1 12233333321 11110 111 221 1111111 00 0 0011110
Q ss_pred ------------------------------------------------eecc----------------------------
Q 008489 217 ------------------------------------------------SYER---------------------------- 220 (564)
Q Consensus 217 ------------------------------------------------~~~~---------------------------- 220 (564)
.|.+
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv 393 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVV 393 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEE
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceE
Confidence 0000
Q ss_pred --c--CCCCCC-------------Cccc-cccccc--cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHH
Q 008489 221 --L--SPLVPL-------------NVPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279 (564)
Q Consensus 221 --~--~~~~~~-------------~~~l-~~l~~~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~ 279 (564)
+ .|.... ...+ ..+.+. ....+|||+ |++.++.+++.|.+.+. .+.++||+++..+|.
T Consensus 394 ~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi-~~~vLhg~~~~rEr~ 472 (844)
T 1tf5_A 394 TIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI-PHQVLNAKNHEREAQ 472 (844)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTC-CCEEECSSCHHHHHH
T ss_pred EecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCccHHHHH
Confidence 0 000000 0000 111111 233467777 89999999999999887 899999999888877
Q ss_pred HHHHHHhCCCCCeeEEEeccccccccccC---------ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcE
Q 008489 280 RQATRFNDASSEFDVLVASDAIGMGLNLN---------ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350 (564)
Q Consensus 280 ~~~~~F~~~~g~~~VlVaT~~~~~Gldip---------v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G 350 (564)
.+.+.|+. | .|+||||++++|+||+ +.+||+++. |.|...|.||+||+||.|.. |
T Consensus 473 ii~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~---------p~s~r~y~hr~GRTGRqG~~---G 536 (844)
T 1tf5_A 473 IIEEAGQK--G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER---------HESRRIDNQLRGRSGRQGDP---G 536 (844)
T ss_dssp HHTTTTST--T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC---------CSSHHHHHHHHTTSSGGGCC---E
T ss_pred HHHHcCCC--C--eEEEeCCccccCcCccccchhhhcCCcEEEEecC---------CCCHHHHHhhcCccccCCCC---C
Confidence 66666655 4 5999999999999997 569999998 66999999999999999988 8
Q ss_pred EEEEecC
Q 008489 351 EVTCLDS 357 (564)
Q Consensus 351 ~~~~l~~ 357 (564)
.++.+.+
T Consensus 537 ~s~~~vs 543 (844)
T 1tf5_A 537 ITQFYLS 543 (844)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 8876643
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=1.1e-24 Score=251.99 Aligned_cols=288 Identities=17% Similarity=0.155 Sum_probs=186.6
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC--CCEEEEccHHHHHHHHHHHHH-hcCCeeEEE
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRLN-KANVSCDLI 131 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~--~~~li~~P~r~La~q~~~~l~-~~g~~~~~~ 131 (564)
..|++.|. ++..+....+..+++.++||+|||.+++..+. .+ ++++|++|+ .|+.|+.+.+. .+|.++.++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 56888888 77777665677899999999999999754442 22 379999999 99999999984 679888888
Q ss_pred eCccc--------cccCCCceEEEcceeccc---------cCcccEEEEccccccCCCCCcc-hHHHHHhccCccc-eEE
Q 008489 132 TGQER--------EEVDGAKHRAVTVEMADV---------VSDYDCAVIDEIQMLGCKTRGF-SFTRALLGICANE-LHL 192 (564)
Q Consensus 132 ~G~~~--------~~~~~~~~i~~T~e~~~~---------l~~~~~vViDEaH~~~~~~rg~-~~~~~ll~l~~~~-~~l 192 (564)
+|... .......++++|++.+.. ..++++|||||+|++....... .....+..+.... ..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L 310 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVL 310 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEE
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEE
Confidence 76542 122356789999876621 3579999999999997542221 1122222221111 111
Q ss_pred EccCCCch-----HH------------------------HHHHH---Hc--CC---------------------------
Q 008489 193 CGDPAAVP-----LI------------------------QQILQ---VT--GD--------------------------- 211 (564)
Q Consensus 193 ~~~~~~~~-----~~------------------------~~l~~---~~--g~--------------------------- 211 (564)
+.+.++.. +. ..+.. .. +.
T Consensus 311 ~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~ 390 (968)
T 3dmq_A 311 LLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAAN 390 (968)
T ss_dssp ESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTC
T ss_pred EEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhccc
Confidence 11111110 00 00000 00 00
Q ss_pred ------------------------ceEE-------Eeec-c------------------------------------cCC
Q 008489 212 ------------------------DVKV-------QSYE-R------------------------------------LSP 223 (564)
Q Consensus 212 ------------------------~~~v-------~~~~-~------------------------------------~~~ 223 (564)
.+.+ ..+. + ..|
T Consensus 391 ~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 470 (968)
T 3dmq_A 391 SDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYP 470 (968)
T ss_dssp CCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCS
T ss_pred chhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcCh
Confidence 0000 0000 0 000
Q ss_pred CC-----------CC-----Cccc-cccccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHH
Q 008489 224 LV-----------PL-----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285 (564)
Q Consensus 224 ~~-----------~~-----~~~l-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F 285 (564)
.. .. ...+ ..+.....+.++||+ ++..++.++..|.+..+..+..+||++++.+|..+++.|
T Consensus 471 e~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 471 ERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp GGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred HHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 00 00 0000 111112456677777 799999999999864344899999999999999999999
Q ss_pred hCCCCCeeEEEeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 286 NDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 286 ~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+++++..+|||||+++++|+|+| +++||+++. |.++..|.||+||+||.|.. +...+|.+..+
T Consensus 551 ~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~---------p~~~~~~~Q~~GR~~R~Gq~-~~v~v~~~~~~ 614 (968)
T 3dmq_A 551 AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL---------PFNPDLLEQRIGRLDRIGQA-HDIQIHVPYLE 614 (968)
T ss_dssp HSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC---------CSSHHHHHHHHHTTSCSSSC-SCCEEEEEEET
T ss_pred hCCCCcccEEEecchhhcCCCcccCcEEEEecC---------CCCHHHHHHHhhccccCCCC-ceEEEEEecCC
Confidence 99322399999999999999998 999999999 66999999999999999986 33455555443
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=1.5e-24 Score=238.60 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=88.0
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCc---------
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI--------- 309 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv--------- 309 (564)
..++||+ |+..++.+++.|.+.+. .+.++||+....++..+.+.|+. | .|+||||++++|+||+.
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~gi-~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtDI~l~gn~~~~~~ 516 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKAGI-KHNVLNAKFHANEAAIVAQAGYP--A--AVTIATNMAGRGTDIVLGGSWQAEVA 516 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTC-CCEECCTTCHHHHHHHHHTTTST--T--CEEEEESCCSSCSCCCTTCCHHHHHH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHHHHhcCCC--C--eEEEecccccCCcCccCCCchHhhhh
Confidence 3467777 89999999999999887 89999999988888888888887 6 59999999999999973
Q ss_pred -----------------------------cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 310 -----------------------------SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 310 -----------------------------~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
.+||+++. |.|...|.||+||+||.|.. |....+.+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~---------pes~riy~qr~GRTGRqGd~---G~s~~fls 581 (853)
T 2fsf_A 517 ALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER---------HESRRIDNQLRGRSGRQGDA---GSSRFYLS 581 (853)
T ss_dssp HCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC---------CSSHHHHHHHHTTSSGGGCC---EEEEEEEE
T ss_pred hcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC---------CCCHHHHHhhccccccCCCC---eeEEEEec
Confidence 49999998 66999999999999999988 88766643
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=1.5e-23 Score=231.06 Aligned_cols=279 Identities=17% Similarity=0.137 Sum_probs=185.4
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCe
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~----~g~~ 127 (564)
.|+ .|+++|. .+|.+ ++|+ |..++||+|||+++..++ +.+..++|++|++.||.|.++.+.. +|++
T Consensus 108 lG~-rP~~VQ~~~ip~L--l~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLs 182 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAAL--HLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQ 182 (922)
T ss_dssp HSC-CCCHHHHHHHHHH--HTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC-CCCHHHHHHHHhH--hcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 377 9999999 99988 5577 999999999999964322 3456789999999999999988874 5999
Q ss_pred eEEEeCccccc----cCCCceEEEcceec------c---------ccCcccEEEEccccccC-CCCC-------------
Q 008489 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVSDYDCAVIDEIQMLG-CKTR------------- 174 (564)
Q Consensus 128 ~~~~~G~~~~~----~~~~~~i~~T~e~~------~---------~l~~~~~vViDEaH~~~-~~~r------------- 174 (564)
+++++|+.... ..++.|+++|+.-+ + .++++.++||||||.+. |..|
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 99999875322 12578999998432 1 13689999999999987 3311
Q ss_pred cc--hHHHHHhccC---------ccceEE-----------------EccCCCchHHHHHHH---H---c--CCceEEE--
Q 008489 175 GF--SFTRALLGIC---------ANELHL-----------------CGDPAAVPLIQQILQ---V---T--GDDVKVQ-- 216 (564)
Q Consensus 175 g~--~~~~~ll~l~---------~~~~~l-----------------~~~~~~~~~~~~l~~---~---~--g~~~~v~-- 216 (564)
|+ ....++-.+. +....+ +.+.+..+....+.. . . ...|.|.
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 11 1233333343 111111 112221111111110 0 0 0011110
Q ss_pred -----------------------------------------------eeccc----------------------------
Q 008489 217 -----------------------------------------------SYERL---------------------------- 221 (564)
Q Consensus 217 -----------------------------------------------~~~~~---------------------------- 221 (564)
.|.+.
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 00000
Q ss_pred ----CCCCCC-------------Cccc-ccccc-ccCC-CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHH
Q 008489 222 ----SPLVPL-------------NVPL-GSFSN-IQTG-DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280 (564)
Q Consensus 222 ----~~~~~~-------------~~~l-~~l~~-~~~g-~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~ 280 (564)
.|.... ...+ ..+.+ ...| .++||+ |++.++.+++.|.+.+. .+.++||+....++..
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi-~~~vLnak~~~rEa~i 501 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI-PHNVLNAKYHEQEATI 501 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC-CCEEECSSCHHHHHHH
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHH
Confidence 000000 0000 11111 1233 467777 89999999999999887 8999999988777777
Q ss_pred HHHHHhCCCCCeeEEEeccccccccccC-c--------------------------------------------------
Q 008489 281 QATRFNDASSEFDVLVASDAIGMGLNLN-I-------------------------------------------------- 309 (564)
Q Consensus 281 ~~~~F~~~~g~~~VlVaT~~~~~Gldip-v-------------------------------------------------- 309 (564)
+.+.|+. | .|+||||++++|+||+ +
T Consensus 502 ia~agr~--G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 502 IAVAGRR--G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHTTTST--T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHhcCCC--C--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7777877 6 5999999999999997 4
Q ss_pred --cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecC
Q 008489 310 --SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (564)
Q Consensus 310 --~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~ 357 (564)
.+||+++. |.|...|.||+||+||.|.. |....+.+
T Consensus 578 GGlhVI~te~---------pes~riy~qr~GRTGRqGdp---G~s~fflS 615 (922)
T 1nkt_A 578 GGLYVLGTER---------HESRRIDNQLRGRSGRQGDP---GESRFYLS 615 (922)
T ss_dssp TSEEEEECSC---------CSSHHHHHHHHHTSSGGGCC---EEEEEEEE
T ss_pred CCcEEEeccC---------CCCHHHHHHHhcccccCCCC---eeEEEEec
Confidence 48999988 66999999999999999987 88766644
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=2e-23 Score=225.93 Aligned_cols=285 Identities=15% Similarity=0.137 Sum_probs=184.7
Q ss_pred CCCCCccc-cchHHHh--cCCceEEEEccCCccHHHHHHHHHH---c---CCCEEEEccHHHHHHHHHHHHHhc--CCee
Q 008489 60 TDLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRLE---S---SSSGIYCGPLRLLAWEVAKRLNKA--NVSC 128 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~--~~~~~viv~apTGsGKT~~~~~~l~---~---~~~~li~~P~r~La~q~~~~l~~~--g~~~ 128 (564)
..|++.|. .++.+.. ..++.+++..|||+|||.+++..+. . .++++|++|+ .|+.|+.+.+.++ +..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceE
Confidence 46888888 7766532 3577899999999999999754432 2 2578999994 5889999999876 5677
Q ss_pred EEEeCccccc-cCCCceEEEcceeccc-----cCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCch-H
Q 008489 129 DLITGQEREE-VDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP-L 201 (564)
Q Consensus 129 ~~~~G~~~~~-~~~~~~i~~T~e~~~~-----l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~~-~ 201 (564)
...+|..... ..+..++++|++.+.. ..++++||+||||.+... +......+..+.+.. +++.+.++.. .
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~--~~~~~~~l~~l~~~~-~l~LTaTP~~n~ 191 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELKSKY-RIALTGTPIENK 191 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSCEEE-EEEECSSCSTTC
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCH--hHHHHHHHHhhccCc-EEEEecCCCCCC
Confidence 7777765332 2356788999876643 357899999999999754 444556665554432 2222222211 1
Q ss_pred HHH-------------------------------------HHHHcCCceEEE-------------------eecccCCCC
Q 008489 202 IQQ-------------------------------------ILQVTGDDVKVQ-------------------SYERLSPLV 225 (564)
Q Consensus 202 ~~~-------------------------------------l~~~~g~~~~v~-------------------~~~~~~~~~ 225 (564)
..+ +...... +.+. .+....+..
T Consensus 192 ~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~-~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~ 270 (500)
T 1z63_A 192 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISP-FILRRTKYDKAIINDLPDKIETNVYCNLTPEQ 270 (500)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTT-TEECCCTTCHHHHTTSCSEEEEEEEECCCHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhh-HeeeecccccchhhcCCCCeEEEEEcCCCHHH
Confidence 111 1000000 1110 000000000
Q ss_pred ----------------CC-----------------------------------Ccc---c-cccccc--cCCCeEEEc-c
Q 008489 226 ----------------PL-----------------------------------NVP---L-GSFSNI--QTGDCIVTF-S 247 (564)
Q Consensus 226 ----------------~~-----------------------------------~~~---l-~~l~~~--~~g~~iv~~-s 247 (564)
.. ... + ..+.+. .+..++||. +
T Consensus 271 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~ 350 (500)
T 1z63_A 271 AAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQF 350 (500)
T ss_dssp HHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEeh
Confidence 00 000 0 001111 344566766 6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecCccccCCcccc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~ 326 (564)
+..++.+.+.|.+..+..+..+||+++.++|.++++.|++++....+|+||+++++|+|+| +++||+++.
T Consensus 351 ~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~--------- 421 (500)
T 1z63_A 351 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR--------- 421 (500)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC---------
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC---------
Confidence 8999999999987533389999999999999999999998322234899999999999997 999999998
Q ss_pred ccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 327 p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|.++..+.||+||++|.|+. ....+|.+...+
T Consensus 422 ~~~~~~~~Q~~gR~~R~Gq~-~~v~v~~lv~~~ 453 (500)
T 1z63_A 422 WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 453 (500)
T ss_dssp CSCC---CHHHHTTTTTTTT-SCEEEEEEEETT
T ss_pred CCCcchHHHHHHHHHHcCCC-CeeEEEEEEeCC
Confidence 67999999999999999986 446677775544
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=3e-20 Score=206.46 Aligned_cols=109 Identities=26% Similarity=0.304 Sum_probs=92.8
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCC-CeeEEEeccccccccccC-ccEEEecC
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g-~~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
..+|||. .+..++.+...|...+. .+..+||+++.++|.++++.|++++. ...+|++|+++++|+|++ +++||+++
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRRY-LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTC-CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CEEEEEEccHHHHHHHHHHHHHCCC-CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 3455555 68899999999988877 89999999999999999999999322 235899999999999997 99999999
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
. |.+++.+.|++||++|.|+. ....+|.+...+
T Consensus 496 ~---------~wnp~~~~Qa~gR~~R~Gq~-~~v~v~~lv~~~ 528 (644)
T 1z3i_X 496 P---------DWNPANDEQAMARVWRDGQK-KTCYIYRLLSTG 528 (644)
T ss_dssp C---------CSSHHHHHHHHTTSSSTTCC-SCEEEEEEEETT
T ss_pred C---------CCCccHHHHHHHhhhhcCCC-CceEEEEEEECC
Confidence 9 77999999999999999985 447788776654
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.84 E-value=9.3e-22 Score=188.16 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=98.6
Q ss_pred cccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 236 ~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
...++.+|||+ ++.+++.+++.|.+.+. .+.++||++++++|..+++.|++ |..+|||||+++++|+|+| +++||
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~Vi 104 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDLSQGERERVLGAFRQ--GEVRVLVATDVAARGLDIPQVDLVV 104 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTC-CEEEECSSSCHHHHHHHHHHHHS--SSCCEEEECTTTTCSSSCCCBSEEE
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCeEEEecChhhcCCCCccCcEEE
Confidence 34577888888 79999999999998876 89999999999999999999999 9999999999999999998 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++. |.+..+|.||+|||||.|.. |.|+.+++..
T Consensus 105 ~~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~l~~~~ 138 (212)
T 3eaq_A 105 HYRL---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPR 138 (212)
T ss_dssp ESSC---------CSSHHHHHHHHTTBCCCC-----BEEEEEECGG
T ss_pred ECCC---------CcCHHHHHHHhcccCCCCCC---CeEEEEEchh
Confidence 9998 66999999999999999976 9999997654
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.6e-20 Score=210.04 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=186.5
Q ss_pred CCCCCccc-cchHHH--hcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHHHHHHHHHHHHHhc--CCe
Q 008489 60 TDLTRPHT-WYPLAR--KKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLRLLAWEVAKRLNKA--NVS 127 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~--~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li~~P~r~La~q~~~~l~~~--g~~ 127 (564)
..|++.|. .+..+. ...+++.|+..+||+|||.+++..+. ..+.+||++| ..|..|+.+.+.++ +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 35777787 665442 23678899999999999999755442 2467899999 66778888888865 677
Q ss_pred eEEEeCcccc------------------ccCCCceEEEcceeccc------cCcccEEEEccccccCCCCCcchHHHHHh
Q 008489 128 CDLITGQERE------------------EVDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKTRGFSFTRALL 183 (564)
Q Consensus 128 ~~~~~G~~~~------------------~~~~~~~i~~T~e~~~~------l~~~~~vViDEaH~~~~~~rg~~~~~~ll 183 (564)
+...+|.... ......++++|++++.. ..++++||+||||.+... +......+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~ 391 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA--ESSLYESLN 391 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS--SSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc--hhHHHHHHH
Confidence 7777775431 11245688899877632 247899999999999643 445555554
Q ss_pred ccCccceEEEccCCCc----hHH-------------------------------HHHHHHc----------------CCc
Q 008489 184 GICANELHLCGDPAAV----PLI-------------------------------QQILQVT----------------GDD 212 (564)
Q Consensus 184 ~l~~~~~~l~~~~~~~----~~~-------------------------------~~l~~~~----------------g~~ 212 (564)
.+.+.. +++-+.+++ .-+ ..+.... ...
T Consensus 392 ~l~~~~-rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k 470 (800)
T 3mwy_W 392 SFKVAN-RMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 470 (800)
T ss_dssp TSEEEE-EEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCE
T ss_pred Hhhhcc-EEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCc
Confidence 443322 222111121 000 0111000 000
Q ss_pred eEEEeecccCCCC----------------C---------------------------------------C----------
Q 008489 213 VKVQSYERLSPLV----------------P---------------------------------------L---------- 227 (564)
Q Consensus 213 ~~v~~~~~~~~~~----------------~---------------------------------------~---------- 227 (564)
.....+..+.+.. . .
T Consensus 471 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (800)
T 3mwy_W 471 TERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550 (800)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHH
Confidence 0000000000000 0 0
Q ss_pred ----C---ccc-cccccc--cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCC-CCeeEE
Q 008489 228 ----N---VPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVL 295 (564)
Q Consensus 228 ----~---~~l-~~l~~~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~Vl 295 (564)
. ..+ ..+... .+..+|||. ....+..+...|...+. .+..+||+++..+|.++++.|++++ +...+|
T Consensus 551 l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI-NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC-CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred hhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 0 000 000011 233566666 58889999999988876 8999999999999999999999833 234699
Q ss_pred EeccccccccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 296 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 296 VaT~~~~~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++|.+++.|||++ +++||+++. |.++..+.|+.||++|.|+. ....||++..++
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~---------~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDS---------DWNPQADLQAMARAHRIGQK-NHVMVYRLVSKD 684 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSC---------CSCSHHHHHHHTTTSCSSCC-SCEEEEEEEETT
T ss_pred EecccccCCCCccccceEEEecC---------CCChhhHHHHHHHHHhcCCC-ceEEEEEEecCC
Confidence 9999999999997 999999998 67999999999999999985 557788886655
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.81 E-value=2e-19 Score=206.96 Aligned_cols=280 Identities=14% Similarity=0.096 Sum_probs=173.0
Q ss_pred CCCCCccc-cchHHHhc------------CCceEEEEccCCccHHHHHHHH--HHc----CCCEEEEccHHHHHHHHHHH
Q 008489 60 TDLTRPHT-WYPLARKK------------VRKVILHVGPTNSGKTHQALSR--LES----SSSGIYCGPLRLLAWEVAKR 120 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~------------~~~~viv~apTGsGKT~~~~~~--l~~----~~~~li~~P~r~La~q~~~~ 120 (564)
..|++.|. +++.+... .+++.++.++||||||.+++.. ++. ..++||++||++|+.|+.+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 45899998 88877541 2478999999999999996332 222 14789999999999999999
Q ss_pred HHhcCCeeEEEeCccc-----c--ccCCCceEEEcceecc----------ccCcccEEEEccccccCCCCCcchHHHHHh
Q 008489 121 LNKANVSCDLITGQER-----E--EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183 (564)
Q Consensus 121 l~~~g~~~~~~~G~~~-----~--~~~~~~~i~~T~e~~~----------~l~~~~~vViDEaH~~~~~~rg~~~~~~ll 183 (564)
+..++... +.|... . ...+..++++|+..+. .+.++.+||+||||+... |..+..+.-
T Consensus 350 f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~ 424 (1038)
T 2w00_A 350 YQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKK 424 (1038)
T ss_dssp HHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHH
T ss_pred HHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHH
Confidence 98764321 122111 0 1235788999985442 245788999999999752 222333332
Q ss_pred ccCccceEEEccCCCchHH------HHHHHHcCC---------------ceEEEe-ecccCC-C-------C--------
Q 008489 184 GICANELHLCGDPAAVPLI------QQILQVTGD---------------DVKVQS-YERLSP-L-------V-------- 225 (564)
Q Consensus 184 ~l~~~~~~l~~~~~~~~~~------~~l~~~~g~---------------~~~v~~-~~~~~~-~-------~-------- 225 (564)
.++. ..++|.++|.... .......|+ ..++.. +....+ . .
T Consensus 425 ~~p~--a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~ 502 (1038)
T 2w00_A 425 KFKR--YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAE 502 (1038)
T ss_dssp HCSS--EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTC
T ss_pred hCCc--ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHH
Confidence 2322 2223322221100 011111222 112211 110000 0 0
Q ss_pred C---CC------cccccccc----c--------cCCCeEEEc-cHHHHHHHHHHHHHcC-----------CCeE-EEEcC
Q 008489 226 P---LN------VPLGSFSN----I--------QTGDCIVTF-SRHAIYRLKKAIESRG-----------KHLC-SIVYG 271 (564)
Q Consensus 226 ~---~~------~~l~~l~~----~--------~~g~~iv~~-s~~~~~~l~~~L~~~~-----------~~~v-~~lhg 271 (564)
. .. ..+..+.+ . ..+..+||+ |+..|..+++.|.+.+ ..++ .++||
T Consensus 503 ~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 503 NQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp STTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 0 00 00011101 0 123456666 8999999999997754 1245 44554
Q ss_pred C----------C----------CHH-----------------------------HHHHHHHHHhCCCCCeeEEEeccccc
Q 008489 272 S----------L----------PPE-----------------------------TRTRQATRFNDASSEFDVLVASDAIG 302 (564)
Q Consensus 272 ~----------l----------~~~-----------------------------~R~~~~~~F~~~~g~~~VlVaT~~~~ 302 (564)
+ + ++. .|..+.+.|++ |+.+|||+|+++.
T Consensus 583 ~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~ILIvvd~ll 660 (1038)
T 2w00_A 583 AANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDLLIVVGMFL 660 (1038)
T ss_dssp CC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSEEEESSTTS
T ss_pred CCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeEEEEcchHH
Confidence 2 2 221 47888999999 9999999999999
Q ss_pred cccccC-ccEEEecCccccCCccccccCHhhHHhhhccCCCCCCC-CCcEEEEEecCC
Q 008489 303 MGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (564)
Q Consensus 303 ~Gldip-v~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~-~~~G~~~~l~~~ 358 (564)
+|+|+| + .|++.+. |.+...++|++||+||.+++ +..|.++.+...
T Consensus 661 tGfDiP~l-~tlylDk---------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 661 TGFDAPTL-NTLFVDK---------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSCCCTTE-EEEEEES---------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred hCcCcccc-cEEEEcc---------CCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999 6 6777776 67899999999999999874 567999888754
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.81 E-value=3.8e-18 Score=189.61 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=97.7
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecC
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
.+.++||+ |++.++.+++.|.+.+. .+..+||++++.+|.++++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELDAFKRQALIRDLRL--GHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-CceeecCCCCHHHHHHHHHHhhc--CCceEEEccChhhcCccCCCCCEEEEeC
Confidence 45677777 89999999999999877 89999999999999999999999 9999999999999999998 99999999
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..+|.- |.|..+|+||+|||||.+. |.|+.+.+..
T Consensus 516 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~ 550 (664)
T 1c4o_A 516 ADKEGF----LRSERSLIQTIGRAARNAR----GEVWLYADRV 550 (664)
T ss_dssp TTSCSG----GGSHHHHHHHHGGGTTSTT----CEEEEECSSC
T ss_pred CcccCC----CCCHHHHHHHHCccCcCCC----CEEEEEEcCC
Confidence 765432 6689999999999999975 9999887654
No 60
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.6e-20 Score=188.39 Aligned_cols=109 Identities=21% Similarity=0.324 Sum_probs=95.5
Q ss_pred cccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 236 ~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
...++.+|||+ ++++++.+++.|.+.+. .+..+||+|++++|..+++.|++ |..+||||||++++|+|+| +++||
T Consensus 25 ~~~~~~~LVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT~va~~Gidi~~v~~VI 101 (300)
T 3i32_A 25 VASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDMSQGERERVMGAFRQ--GEVRVLVATDVAARGLDIPQVDLVV 101 (300)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHTTTC-CEEEECSCCCTHHHHHHHHHHHH--TSCCEEEECSTTTCSTTCCCCSEEE
T ss_pred hcCCCCEEEEECCHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEechhhcCccccceeEEE
Confidence 34577888888 79999999999988776 89999999999999999999999 9999999999999999998 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++. |.+..+|.||+|||||.|.. |.|+.+++..
T Consensus 102 ~~d~---------p~s~~~y~Qr~GRagR~g~~---G~~i~l~~~~ 135 (300)
T 3i32_A 102 HYRM---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPR 135 (300)
T ss_dssp ESSC---------CSSTTHHHHHHTCCC--------CEEEEEECSS
T ss_pred EcCC---------CCCHHHHHHHccCcCcCCCC---ceEEEEeChH
Confidence 9998 66999999999999999976 9999997654
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=3e-19 Score=163.44 Aligned_cols=110 Identities=24% Similarity=0.425 Sum_probs=99.5
Q ss_pred ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE
Q 008489 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (564)
Q Consensus 235 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V 312 (564)
....++.+|||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gld~~~~~~V 107 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDLGY-PCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVATDVAARGIDIENISLV 107 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTTTCCCSCCSEE
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCchhcCCEE
Confidence 334566788888 89999999999998876 89999999999999999999999 8999999999999999998 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
|+++. |.+..+|.||+||+||.|.. |.++.+....
T Consensus 108 i~~~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 142 (163)
T 2hjv_A 108 INYDL---------PLEKESYVHRTGRTGRAGNK---GKAISFVTAF 142 (163)
T ss_dssp EESSC---------CSSHHHHHHHTTTSSCTTCC---EEEEEEECGG
T ss_pred EEeCC---------CCCHHHHHHhccccCcCCCC---ceEEEEecHH
Confidence 99998 66999999999999999987 9998886543
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.80 E-value=1.2e-18 Score=188.12 Aligned_cols=103 Identities=20% Similarity=0.187 Sum_probs=86.3
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC----c----
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----I---- 309 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip----v---- 309 (564)
...+|||+ |++.++.+++.|.+.+. .+.++||+....++..+...|+. | .|+||||++++|+||+ |
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi-~~~vLhgkq~~rE~~ii~~ag~~--g--~VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGI-PHQVLNAKYHEKEAEIVAKAGQK--G--MVTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTC-CCEEECSCHHHHHHHHHHHHHST--T--CEEEEETTTTTTCCCCCCTTTTTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCchHHHHHHHHhCCCC--C--eEEEEcchhhCCcCccCCcchhhcC
Confidence 34577777 89999999999998877 89999999777666666677776 5 5999999999999995 3
Q ss_pred -cEEEecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 310 -SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 310 -~~VI~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
.+||+++. |.|...|.||+||+||.|.. |.++.+.+.
T Consensus 549 glhVInte~---------Pes~r~y~qriGRTGRqG~~---G~a~~fvsl 586 (822)
T 3jux_A 549 GLCIIGTER---------HESRRIDNQLRGRAGRQGDP---GESIFFLSL 586 (822)
T ss_dssp SCEEEESSC---------CSSHHHHHHHHTTSSCSSCC---CEEEEEEET
T ss_pred CCEEEecCC---------CCCHHHHHHhhCccccCCCC---eeEEEEech
Confidence 49999998 66999999999999999987 887666543
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=171.86 Aligned_cols=160 Identities=16% Similarity=0.066 Sum_probs=118.7
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------------cCCCEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGI 105 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------------~~~~~l 105 (564)
.+++.+.+.+.+. |+..|+++|. ++|.+ ++++++++++|||||||++++..++ .+++++
T Consensus 26 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~l 98 (228)
T 3iuy_A 26 QQYPDLLKSIIRV-----GILKPTPIQSQAWPII--LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGML 98 (228)
T ss_dssp TTCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEE
T ss_pred ccCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEE
Confidence 4788999999998 9999999999 99998 5689999999999999999754432 345789
Q ss_pred EEccHHHHHHHHHHHHHhc---CCeeEEEeCcccccc------CCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA---NVSCDLITGQEREEV------DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~---g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
|++|+++|+.|+++++.++ ++.+..++|+..... .+..++++|++.+. .+.+++++|+||||.
T Consensus 99 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 99 VLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp EECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred EEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 9999999999999999874 677888887654332 35689999996652 257899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHH
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~ 207 (564)
+.+.+++..+..++..+. ...++++.+++. +.+.+++.
T Consensus 179 ~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDVR-PDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp HHHTTCHHHHHHHHHHSC-SSCEEEEEESCCCHHHHHHHH
T ss_pred HhccchHHHHHHHHHhCC-cCCeEEEEEeeCCHHHHHHHH
Confidence 986544445555554443 344555555554 34455543
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=162.72 Aligned_cols=130 Identities=21% Similarity=0.327 Sum_probs=101.5
Q ss_pred ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE
Q 008489 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (564)
Q Consensus 235 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V 312 (564)
.....+.+|||+ ++..++.++..|.+.+. .+..+||++++.+|..+++.|++ |..+|||||+++++|+|+| +++|
T Consensus 30 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 30 GSITIGQAIIFCQTRRNAKWLTVEMIQDGH-QVSLLSGELTVEQRASIIQRFRD--GKEKVLITTNVCARGIDVKQVTIV 106 (175)
T ss_dssp TTSCCSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECSSCCHHHHHHHHHHHHT--TSCSEEEECCSCCTTTCCTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEecchhcCCCcccCCEE
Confidence 334566788888 89999999999998876 89999999999999999999999 8999999999999999998 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC-H---HHHHhhhCCCChh
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPM 373 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~-~---~~~~~~~~~~~~e 373 (564)
|+++.+.+.+. ..+..+|.||+|||||.|.. |.++.+...+ . ..+.+.+....++
T Consensus 107 i~~d~p~~~~~---~~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 165 (175)
T 2rb4_A 107 VNFDLPVKQGE---EPDYETYLHRIGRTGRFGKK---GLAFNMIEVDELPSLMKIQDHFNSSIKQ 165 (175)
T ss_dssp EESSCCC--CC---SCCHHHHHHHHCBC----CC---EEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred EEeCCCCCccc---cCCHHHHHHHhcccccCCCC---ceEEEEEccchHHHHHHHHHHhcCcccc
Confidence 99998532211 16899999999999999977 9998886544 2 3333444444443
No 65
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.78 E-value=9.9e-19 Score=160.26 Aligned_cols=123 Identities=20% Similarity=0.344 Sum_probs=99.9
Q ss_pred cccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEE
Q 008489 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 236 ~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI 313 (564)
....+.++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 27 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 27 SISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp HTTCSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEcChhhcCCCcccCCEEE
Confidence 34567788877 89999999999998776 89999999999999999999999 9999999999999999998 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC-CH---HHHHhhhCCCChh
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DL---PLLHKSLLEPSPM 373 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~-~~---~~~~~~~~~~~~e 373 (564)
+++. |.+..+|.||+||+||.|.. |.|+.+... +. ..+.+++....++
T Consensus 104 ~~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 104 NYDL---------PANKENYIHRIGRGGRFGRK---GVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp ESSC---------CSSGGGGGGSSCSCC--------CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred EeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 9998 66999999999999999976 888888654 33 3344444444443
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=5.4e-19 Score=163.18 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=99.2
Q ss_pred ccccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEE
Q 008489 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (564)
Q Consensus 235 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~V 312 (564)
.....+.++||+ ++..++.+++.|...+. .+..+||++++.+|..+++.|++ |..+|||||+++++|+|+| +++|
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~V 103 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIERVNIA 103 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEESSCCSTTCCGGGCSEE
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCcEEEECCchhcCcchhhCCEE
Confidence 344566788888 89999999999998876 89999999999999999999999 9999999999999999998 9999
Q ss_pred EecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|+++. |.+..+|.||+||+||.|.. |.++.+...
T Consensus 104 i~~d~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~ 137 (172)
T 1t5i_A 104 FNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSD 137 (172)
T ss_dssp EESSC---------CSSHHHHHHHHHHHTGGGCC---CEEEEEECS
T ss_pred EEECC---------CCCHHHHHHHhcccccCCCC---cEEEEEEcC
Confidence 99998 66999999999999999987 899888764
No 67
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=1.8e-18 Score=168.77 Aligned_cols=161 Identities=17% Similarity=0.075 Sum_probs=121.0
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH------------cCCCEEE
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------SSSSGIY 106 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~------------~~~~~li 106 (564)
.+++.+.+.+.+. |+..|++.|. ++|.+. +++++++++|||||||++++..++ .+++++|
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 35 NFPANVMDVIARQ-----NFTEPTAIQAQGWPVAL--SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp TCCHHHHHHHHTT-----TCCSCCHHHHHHHHHHH--HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 3899999999998 9999999999 999984 589999999999999999754433 2457899
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~ 168 (564)
++|+|+|+.|+++.+.++ ++.+..++|+.... ..+..++++||+.+. .+.+++++|+||||+
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 187 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR 187 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH
Confidence 999999999999888754 88888888865432 125789999996552 367899999999999
Q ss_pred cCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
+.+..++..+..++-.+ ....++++.+++. +.+..++..
T Consensus 188 l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 188 MLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp HHHTTCHHHHHHHHTTS-CSSCEEEEEESCCCHHHHHHHHH
T ss_pred HhhhCcHHHHHHHHHhC-CccceEEEEEeecCHHHHHHHHH
Confidence 98654444444444334 3444555555555 345555544
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=165.53 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=121.3
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----------cC
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SS 101 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-----------~~ 101 (564)
.+.++. +++.+.+.+++. |+..|++.|. +++.+ ++++++++++|||||||++++..++ .+
T Consensus 26 ~f~~~~-l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 97 (236)
T 2pl3_A 26 RFSDFP-LSKKTLKGLQEA-----QYRLVTEIQKQTIGLA--LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDG 97 (236)
T ss_dssp BGGGSC-CCHHHHHHHHHT-----TCCBCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CHhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCC
Confidence 345554 789999999988 9999999999 99988 5689999999999999999654332 24
Q ss_pred CCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCccccc-----cCCCceEEEcceecc---------ccCcccEEEE
Q 008489 102 SSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD---------VVSDYDCAVI 163 (564)
Q Consensus 102 ~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~-----~~~~~~i~~T~e~~~---------~l~~~~~vVi 163 (564)
.+++|++|+++|+.|+++.++++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 57899999999999999999865 47888888865322 246789999996541 2478999999
Q ss_pred ccccccCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 164 DEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 164 DEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
||||++.+...+..+..++-.+.. ..++++.+++. +.+..+...
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPK-KRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCT-TSEEEEEESSCCHHHHHHHHH
T ss_pred eChHHHhcCCcHHHHHHHHHhCCC-CCeEEEEEeeCCHHHHHHHHH
Confidence 999998765334444555544443 34444444444 445555554
No 69
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=163.09 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=94.1
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEec
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~ 315 (564)
.++.+|||+ ++..++.+++.|...+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGV-EAVAIHGGKDQEERTKAIEAFRE--GKKDVLVATDVASKGLDFPAIQHVINY 129 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHH--TSCSEEEECHHHHTTCCCCCCSEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEcCchhcCCCcccCCEEEEe
Confidence 345677877 89999999999998876 89999999999999999999999 8999999999999999997 9999999
Q ss_pred CccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 316 ~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
+. |.+..+|.||+||+||.|.. |.++.+...
T Consensus 130 d~---------p~~~~~~~qr~GR~gR~g~~---g~~i~l~~~ 160 (191)
T 2p6n_A 130 DM---------PEEIENYVHRIGRTGCSGNT---GIATTFINK 160 (191)
T ss_dssp SC---------CSSHHHHHHHHTTSCC---C---CEEEEEECT
T ss_pred CC---------CCCHHHHHHHhCccccCCCC---cEEEEEEcC
Confidence 98 66999999999999999987 888888664
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=5.8e-18 Score=160.60 Aligned_cols=159 Identities=16% Similarity=0.066 Sum_probs=119.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li~~P~r~ 112 (564)
+++.+.+.+++. |+..|++.|. +++.+ ++++++++.+|||||||++++..++. ..+++|++|+++
T Consensus 10 l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 10 LKRELLMGIFEM-----GWEKPSPIQEESIPIA--LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp CCHHHHHHHHTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 789999999998 9999999999 99988 56899999999999999997655442 247999999999
Q ss_pred HHHHHHHHHHhc-----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccccCCCC
Q 008489 113 LAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (564)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~ 173 (564)
|+.|+++.+.++ +..+...+|+.... ..+..++++|++.+. .+.+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 999999998854 67788888865321 246789999996542 35789999999999998764
Q ss_pred CcchHHHHHhccCccceEEEccCCCc-hHHHHHHH
Q 008489 174 RGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (564)
Q Consensus 174 rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~ 207 (564)
++..+..++..+. ...++++.+++. +.+..++.
T Consensus 163 ~~~~l~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 163 FVQIMEDIILTLP-KNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp THHHHHHHHHHSC-TTCEEEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHhCC-ccceEEEEEeeCCHHHHHHHH
Confidence 4444455544443 334455555554 34444443
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.76 E-value=6.2e-18 Score=170.29 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=121.8
Q ss_pred hhccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCC
Q 008489 32 EKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSS 103 (564)
Q Consensus 32 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~ 103 (564)
...|..+. +++.+.+.+... |+..|+++|. ++|.+....+++++++||||||||++++..++. ..+
T Consensus 91 ~~~f~~l~-l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~ 164 (300)
T 3fmo_B 91 VKSFEELR-LKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 164 (300)
T ss_dssp CCCSGGGT-CCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCHhhcC-CCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCce
Confidence 34455553 899999999999 9999999999 999995433499999999999999998655542 236
Q ss_pred EEEEccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc---cCCCceEEEcceec-c--------ccCcccEEEEccc
Q 008489 104 GIYCGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMA-D--------VVSDYDCAVIDEI 166 (564)
Q Consensus 104 ~li~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~---~~~~~~i~~T~e~~-~--------~l~~~~~vViDEa 166 (564)
++|++|+|+||.|+++.+..+ ++.+...+|+.... ..+..++|+||+.+ + .+.+++++|||||
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 899999999999999988854 56777777765432 23567999999654 1 2578999999999
Q ss_pred cccCCCCCcch-HHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 167 QMLGCKTRGFS-FTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 167 H~~~~~~rg~~-~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
|.+.+. .|+. ....++.......+++..+++. +.+..++..
T Consensus 245 d~l~~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 245 DVMIAT-QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp HHHHHS-TTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred HHHhhc-cCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 999752 2433 2333444444445555555554 445555544
No 72
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=170.41 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=119.5
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----------cCCCEEEEc
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SSSSGIYCG 108 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-----------~~~~~li~~ 108 (564)
+++.+.+.++.. |+..|+++|. +++.+.. +++++++||||||||++++..++ .+.+++|++
T Consensus 61 l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~ 133 (262)
T 3ly5_A 61 VNENTLKAIKEM-----GFTNMTEIQHKSIRPLLE--GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILS 133 (262)
T ss_dssp CCHHHHHHHHHT-----TCCBCCHHHHHHHHHHHH--TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred cCHHHHHHHHHC-----CCCCCCHHHHHHHHHHhC--CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 788999999988 9999999999 9998854 78999999999999999754443 356799999
Q ss_pred cHHHHHHHHHHHHHhc----CCeeEEEeCcccccc------CCCceEEEcceecc---------ccCcccEEEEcccccc
Q 008489 109 PLRLLAWEVAKRLNKA----NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQML 169 (564)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~------~~~~~i~~T~e~~~---------~l~~~~~vViDEaH~~ 169 (564)
|+|+||.|+++.++++ +..+..++|+..... .+..++++||+.+. .+.+++++||||||++
T Consensus 134 Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l 213 (262)
T 3ly5_A 134 PTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI 213 (262)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHH
Confidence 9999999999999864 677888888654321 35789999996542 2578999999999999
Q ss_pred CCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHH
Q 008489 170 GCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (564)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~ 207 (564)
.+..++..+..++-.+ ....++++.+++. +.+..+..
T Consensus 214 ~~~~~~~~l~~i~~~~-~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 214 LDVGFEEELKQIIKLL-PTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp HHTTCHHHHHHHHHHS-CSSSEEEEECSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhC-CCCCeEEEEEecCCHHHHHHHH
Confidence 8653444444444333 3345555655555 44555554
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=165.10 Aligned_cols=165 Identities=17% Similarity=0.137 Sum_probs=122.0
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c---CCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S---SSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~---~~~~li 106 (564)
|..+ .+++.+.+.+++. |+..|++.|. +++.+ ++++++++.+|||||||++++..++ . ..+++|
T Consensus 45 f~~l-~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~li 116 (249)
T 3ber_A 45 FKDL-GVTDVLCEACDQL-----GWTKPTKIQIEAIPLA--LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALV 116 (249)
T ss_dssp TGGG-TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEE
T ss_pred HHHc-CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEE
Confidence 4444 3789999999998 9999999999 99988 5689999999999999999754443 2 246999
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc---------ccCcccEEEEcccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~---------~l~~~~~vViDEaH 167 (564)
++|+|+|+.|++++++++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 999999999999988854 78888888865432 246789999996541 25779999999999
Q ss_pred ccCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
.+.+.+++..+..++..+.. ..++++.+++. +.+.+++..
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~-~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPR-DRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCS-SSEEEEEESSCCHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHhCCC-CCeEEEEeccCCHHHHHHHHH
Confidence 98765444444555544433 34444444544 445555543
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.75 E-value=9.5e-18 Score=159.17 Aligned_cols=160 Identities=19% Similarity=0.115 Sum_probs=119.0
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEcc
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGP 109 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~~P 109 (564)
+++.+.+.+++. |+..|++.|. +++.+ ++++++++.+|||||||++++..+.. .++++|++|
T Consensus 8 l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 8 LKPEILEALHGR-----GLTTPTPIQAAALPLA--LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 789999999988 9999999999 99988 55899999999999999997544432 357899999
Q ss_pred HHHHHHHHHHHHHhc--CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccccCCCC
Q 008489 110 LRLLAWEVAKRLNKA--NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (564)
Q Consensus 110 ~r~La~q~~~~l~~~--g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~~~~ 173 (564)
+++|+.|++++++++ +..+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+..
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence 999999999999976 46777777765321 136789999996542 25789999999999987654
Q ss_pred CcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 174 RGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 174 rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
++..+..++-.+. ...++++.+++. +.+..+.+.
T Consensus 161 ~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~ 195 (207)
T 2gxq_A 161 FEEEVEALLSATP-PSRQTLLFSATLPSWAKRLAER 195 (207)
T ss_dssp CHHHHHHHHHTSC-TTSEEEEECSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-ccCeEEEEEEecCHHHHHHHHH
Confidence 4444444443333 344555555555 345555544
No 75
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.74 E-value=5.3e-18 Score=162.73 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=116.6
Q ss_pred CcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 008489 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (564)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~li~~P~r~ 112 (564)
+++.+.+.+++. |+..|++.|. +++.+. +++++++++|||||||++++..++. ..+++|++|+++
T Consensus 11 l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 11 FQPFIIEAIKTL-----RFYKPTEIQERIIPGAL--RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 789999999988 9999999999 999885 4899999999999999997555432 357899999999
Q ss_pred HHHHHHHHHHhc--------CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCcccEEEEccccccC
Q 008489 113 LAWEVAKRLNKA--------NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 113 La~q~~~~l~~~--------g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~~ 170 (564)
|+.|+++.+.++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||.+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 999999988754 57788888765422 125679999996542 35789999999999998
Q ss_pred CCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHH
Q 008489 171 CKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (564)
Q Consensus 171 ~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~ 207 (564)
+...+..+..++-.+. ...++++.+++. +.+.+++.
T Consensus 164 ~~~~~~~l~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~ 200 (219)
T 1q0u_A 164 DMGFITDVDQIAARMP-KDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp HTTCHHHHHHHHHTSC-TTCEEEEEESCCCGGGHHHHH
T ss_pred hhChHHHHHHHHHhCC-cccEEEEEecCCCHHHHHHHH
Confidence 5533333444444443 344444444444 33444443
No 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=166.53 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=118.2
Q ss_pred cCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH--------cCCCEEEEccH
Q 008489 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE--------SSSSGIYCGPL 110 (564)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~--------~~~~~li~~P~ 110 (564)
.+++.+.+.+.+. |+..|++.|. ++|.+ ++++++++.+|||||||++++..++ .+.+++|++|+
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 35 KINSRLLQNILDA-----GFQMPTPIQMQAIPVM--LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 5899999999998 9999999999 99988 5589999999999999999754443 23478999999
Q ss_pred HHHHHHHHHHHHhc----CCeeEEEeCcccc-------ccCCCceEEEcceecc----------ccCcccEEEEcccccc
Q 008489 111 RLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQML 169 (564)
Q Consensus 111 r~La~q~~~~l~~~----g~~~~~~~G~~~~-------~~~~~~~i~~T~e~~~----------~l~~~~~vViDEaH~~ 169 (564)
++|+.|+++++.++ |..+..++|+... ...+..++++||+.+. .+.+++++|+||||++
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 108 RELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 99999999999865 6677766654321 1235689999996552 2578999999999999
Q ss_pred CCCC-Ccch--HHHHHhccCccceEEEccCCCc-hHHHHHHHHc
Q 008489 170 GCKT-RGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQVT 209 (564)
Q Consensus 170 ~~~~-rg~~--~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~~ 209 (564)
.+.. .|+. +..++..+.....++++.+++. +.+..++...
T Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp HHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHh
Confidence 7532 2332 2333333444455556656665 3455555443
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.74 E-value=1.3e-17 Score=160.40 Aligned_cols=165 Identities=11% Similarity=0.013 Sum_probs=118.0
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEE
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIY 106 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~-------~~~~~li 106 (564)
|.++. +++.+.+.+++. |+..|++.|. +++.+ ++++++++.+|||||||++++..++ ..++++|
T Consensus 16 f~~l~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 16 FDDME-LDENLLRGVFGY-----GFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp GGGGT-CCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred hhhcC-CCHHHHHHHHHC-----CCCCCcHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 44443 789999999988 9999999999 99988 5589999999999999999754443 2347999
Q ss_pred EccHHHHHHHHHHHHHhc----CCeeEEEeCcccccc-----CCCceEEEcceecc--------ccCcccEEEEcccccc
Q 008489 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREEV-----DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (564)
Q Consensus 107 ~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~-----~~~~~i~~T~e~~~--------~l~~~~~vViDEaH~~ 169 (564)
++|+++|+.|+++.+.++ ++.+...+|+..... .+..++++|++.+. .+.+++++|+||||.+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 999999999999998854 677888888654321 24789999996642 2577999999999998
Q ss_pred CCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 170 GCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
.+..++..+..++..+ ....++++.+++. +.+..+...
T Consensus 168 ~~~~~~~~l~~i~~~~-~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLL-PPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp HHTTCHHHHHHHHHHS-CTTCEEEEEESSCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhC-CccCeEEEEEeecCHHHHHHHHH
Confidence 7653333344444333 3344555555555 344455543
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=157.82 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=83.3
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEec
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~ 315 (564)
..+.+|||+ +++.++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--GKSPILVATAVAARGLDISNVKHVINF 121 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC--------CHHHHHHHH--TSSSEEEEEC------CCCSBSEEEES
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEcChhhcCCCcccCCEEEEe
Confidence 355677777 89999999999998876 89999999999999999999999 8999999999999999997 9999999
Q ss_pred CccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 316 ~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+. |.+..+|.||+||+||.|.. |.|+.++...
T Consensus 122 d~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 153 (185)
T 2jgn_A 122 DL---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 153 (185)
T ss_dssp SC---------CSSHHHHHHHHTTBCCTTSC---EEEEEEECGG
T ss_pred CC---------CCCHHHHHHHccccCCCCCC---cEEEEEEchh
Confidence 98 66999999999999999977 9999887643
No 79
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.73 E-value=1.1e-17 Score=161.76 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=119.0
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~l 105 (564)
.+..+. +++.+.+.+++. |+..|++.|. +++.+ ++++++++++|||||||+++...++. +++++
T Consensus 25 ~f~~l~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~l 96 (230)
T 2oxc_A 25 DFESLL-LSRPVLEGLRAA-----GFERPSPVQLKAIPLG--RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQIL 96 (230)
T ss_dssp CGGGGT-CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CHhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 344443 789999999988 9999999999 99988 55899999999999999996544421 25789
Q ss_pred EEccHHHHHHHHHHHHHhc-----CCeeEEEeCcccc-----ccCCCceEEEcceecc--------ccCcccEEEEcccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA-----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQ 167 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~-----~~~~~~~i~~T~e~~~--------~l~~~~~vViDEaH 167 (564)
|++|+++|+.|++++++++ ++.+..++|+... ...+..++++|++.+. .+.+++++|+||||
T Consensus 97 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 97 ILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 9999999999999999864 6788888886432 1246789999996542 24788999999999
Q ss_pred ccCCCC-CcchHHHHHhccCccceEEEccCCCch-HHHHHH
Q 008489 168 MLGCKT-RGFSFTRALLGICANELHLCGDPAAVP-LIQQIL 206 (564)
Q Consensus 168 ~~~~~~-rg~~~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~ 206 (564)
++.+.. .+..+..++-.+. ...++++.+++.+ .+.+++
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~-~~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLP-ASKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSC-SSCEEEEEESCCCHHHHHHH
T ss_pred HhhcCcchHHHHHHHHHhCC-CCCeEEEEEeccCHHHHHHH
Confidence 997542 2223333333333 3444555555543 344444
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.73 E-value=1.1e-17 Score=162.78 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=117.9
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~l 105 (564)
.|.++. +++.+.+.++.. |+..|++.|. +++.+ ++++++++++|||||||++++..++. ..+++
T Consensus 31 ~f~~l~-l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 31 NFDDMN-LKESLLRGIYAY-----GFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp SGGGSC-CCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ChhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 345553 889999999888 9999999999 99988 56899999999999999997655542 35889
Q ss_pred EEccHHHHHHHHHHHHHhc----CCeeEEEeCcccccc-------CCCceEEEcceecc--------ccCcccEEEEccc
Q 008489 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREEV-------DGAKHRAVTVEMAD--------VVSDYDCAVIDEI 166 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~~-------~~~~~i~~T~e~~~--------~l~~~~~vViDEa 166 (564)
|++|+++|+.|+++.++++ +..+...+|+..... ....++++||+.+. .+.+++++|+|||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 9999999999999999865 567777777654321 12689999986531 2577999999999
Q ss_pred cccCCCCCcchHHHHHhccCccceEEEccCCCc-hHHHHHHHH
Q 008489 167 QMLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 167 H~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
|.+.+..++..+..++..+ ....++++.+++. +.+.+++..
T Consensus 183 h~~~~~~~~~~l~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~ 224 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKL-NTSIQVVLLSATMPTDVLEVTKK 224 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHS-CTTCEEEEECSSCCHHHHHHHHH
T ss_pred hHhhccCcHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHHH
Confidence 9987543333334444333 3445555555555 345555543
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.72 E-value=1.9e-17 Score=162.58 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=120.0
Q ss_pred cCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c---------
Q 008489 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------- 100 (564)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~--------- 100 (564)
|.++. +++.+.+.++.. |+..|++.|. +++.+ ++++++++++|||||||++++..++ .
T Consensus 25 f~~l~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 96 (253)
T 1wrb_A 25 FDELK-LDPTIRNNILLA-----SYQRPTPIQKNAIPAI--LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 96 (253)
T ss_dssp SGGGS-CCCSTTTTTTTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred HhhCC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccc
Confidence 44443 788888888888 9999999999 99988 5589999999999999999754433 1
Q ss_pred ---CCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeCccccc------cCCCceEEEcceecc--------ccCccc
Q 008489 101 ---SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYD 159 (564)
Q Consensus 101 ---~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G~~~~~------~~~~~~i~~T~e~~~--------~l~~~~ 159 (564)
.++++|++|+|+|+.|+++++.++ ++.+..++|+.... ..+..++++|++.+. .+.+++
T Consensus 97 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 97 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 147999999999999999998854 56777777765322 236789999996652 357889
Q ss_pred EEEEccccccCCCCCcchHHHHHhc--cCc-cceEEEccCCCc-hHHHHHHHH
Q 008489 160 CAVIDEIQMLGCKTRGFSFTRALLG--ICA-NELHLCGDPAAV-PLIQQILQV 208 (564)
Q Consensus 160 ~vViDEaH~~~~~~rg~~~~~~ll~--l~~-~~~~l~~~~~~~-~~~~~l~~~ 208 (564)
++|+||||++.+..++..+..++-. +.. ...++++.+++. +.+..+...
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 9999999999865444445555442 222 134455555554 445555544
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=2e-17 Score=158.78 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=118.5
Q ss_pred ccCccccCcHHHHHhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEE
Q 008489 34 IIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGI 105 (564)
Q Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-------~~~~l 105 (564)
.|.++. +++.+.+.++.. |+..|++.|. +++.+ ++++++++.+|||||||++++..++. ..+++
T Consensus 15 ~f~~~~-l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~l 86 (220)
T 1t6n_A 15 GFRDFL-LKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 86 (220)
T ss_dssp CSTTSC-CCHHHHHHHHHT-----TCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEE
T ss_pred CHhhcC-CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEE
Confidence 355553 889999999988 9999999999 99988 45889999999999999997655542 23799
Q ss_pred EEccHHHHHHHHHHHHHhc-----CCeeEEEeCccccc-------cCCCceEEEcceecc--------ccCcccEEEEcc
Q 008489 106 YCGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDE 165 (564)
Q Consensus 106 i~~P~r~La~q~~~~l~~~-----g~~~~~~~G~~~~~-------~~~~~~i~~T~e~~~--------~l~~~~~vViDE 165 (564)
|++|+++|+.|+++.++++ ++.+..++|+.... .....++++|++.+. .+.+++++|+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 9999999999999998865 78888888865321 124589999996552 357899999999
Q ss_pred ccccCCCCCcch-HHHHHhccCccceEEEccCCCch-HHHHHHH
Q 008489 166 IQMLGCKTRGFS-FTRALLGICANELHLCGDPAAVP-LIQQILQ 207 (564)
Q Consensus 166 aH~~~~~~rg~~-~~~~ll~l~~~~~~l~~~~~~~~-~~~~l~~ 207 (564)
||++.+. .++. ....++.......++++.+++.+ .+.+++.
T Consensus 167 ah~~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 167 CDKMLEQ-LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHHHSS-HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred HHHHhcc-cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 9998752 2321 11223333333445555555442 3444443
No 83
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.55 E-value=5.6e-19 Score=162.76 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=96.8
Q ss_pred ccCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEe
Q 008489 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (564)
Q Consensus 237 ~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~ 314 (564)
...+.+|||+ ++..++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~Vi~ 104 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREAGI-NNCYLEGEMVQGKRNEAIKRLTE--GRVNVLVATDVAARGIDIPDVSHVFN 104 (170)
Confidence 3456677777 79999999999988766 89999999999999999999999 8999999999999999997 999999
Q ss_pred cCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 315 ~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
++. |.+..+|.||+||+||.|.. |.++.+....
T Consensus 105 ~~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 137 (170)
T 2yjt_D 105 FDM---------PRSGDTYLHRIGRTARAGRK---GTAISLVEAH 137 (170)
Confidence 998 66999999999999999976 8888886543
No 84
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=6.2e-14 Score=154.40 Aligned_cols=110 Identities=18% Similarity=0.058 Sum_probs=87.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCe
Q 008489 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (564)
Q Consensus 57 ~~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~r~La~q~~~~l~~----~g~~ 127 (564)
.|+ .|+++|. .+|.+ ++|+ +..+.||||||+++..++ +.+..++|++||+.||.|.++.+.. +|++
T Consensus 76 lG~-~Pt~VQ~~~ip~L--lqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL--HEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp TCC-CCCHHHHHHHHHH--HTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred hCC-CCcHHHHhhcccc--cCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 478 9999999 99988 5577 999999999999974333 3455789999999999999998874 4999
Q ss_pred eEEEeCccccc----cCCCceEEEcceec------c---------ccC---cccEEEEccccccCC
Q 008489 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVS---DYDCAVIDEIQMLGC 171 (564)
Q Consensus 128 ~~~~~G~~~~~----~~~~~~i~~T~e~~------~---------~l~---~~~~vViDEaH~~~~ 171 (564)
+++++|+.... ..+..++++|+..+ + .++ ++.++||||+|.+..
T Consensus 151 v~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 151 VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp EEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 99999975432 23678999998433 1 135 799999999999863
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.55 E-value=6e-15 Score=140.44 Aligned_cols=112 Identities=20% Similarity=0.095 Sum_probs=82.6
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEccHHHHHHH-HHHHHHhc-
Q 008489 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLLAWE-VAKRLNKA- 124 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~~P~r~La~q-~~~~l~~~- 124 (564)
....|++.|. +++.+ ++++++++.+|||+|||++++..+.. .++++|++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~--~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPA--LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHH--hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 5668999999 99988 45889999999999999998655542 5689999999999999 66666643
Q ss_pred --CCeeEEEeCcccccc------CCCceEEEcceec--------------cccCcccEEEEccccccCC
Q 008489 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMA--------------DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 125 --g~~~~~~~G~~~~~~------~~~~~i~~T~e~~--------------~~l~~~~~vViDEaH~~~~ 171 (564)
+..+..++|+..... .+..++++|++.+ ..+.++++||+||||++.+
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 678888888654322 2478999999654 2357889999999999974
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.52 E-value=2.9e-14 Score=155.03 Aligned_cols=75 Identities=13% Similarity=0.024 Sum_probs=55.0
Q ss_pred cCCCCCCccc-cchHHH-h-cCCceEEEEccCCccHHHHHHHH-HHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeC
Q 008489 58 DFTDLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSR-LESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~-~-~~~~~viv~apTGsGKT~~~~~~-l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G 133 (564)
|+ .+++.|. .+..+. . ..++++++.+|||+|||.+++.. +...++++|++||++|+.|+.+.+..+++++..+.|
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 55 7888888 443221 1 36889999999999999997544 445678899999999999999999888877776665
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=139.91 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=79.8
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----CC-----CEEEEccHHHHHHHHHHHHHh-c----C
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----SS-----SGIYCGPLRLLAWEVAKRLNK-A----N 125 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~----~~-----~~li~~P~r~La~q~~~~l~~-~----g 125 (564)
.+++.|+ +++.+. ++++++++||||||||+++...+.+ .+ ++++++|+|+++.|+++++.. + |
T Consensus 61 p~~~~q~~~i~~i~--~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 61 PVKKFESEILEAIS--QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp GGGGGHHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred ChHHHHHHHHHHHh--cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 4677788 888884 5999999999999999986544432 22 568889999999999999974 2 4
Q ss_pred CeeEEEeCcccccc-CCCceEEEcceec-----cccCcccEEEEcccccc
Q 008489 126 VSCDLITGQEREEV-DGAKHRAVTVEMA-----DVVSDYDCAVIDEIQML 169 (564)
Q Consensus 126 ~~~~~~~G~~~~~~-~~~~~i~~T~e~~-----~~l~~~~~vViDEaH~~ 169 (564)
..++.....+.... .+..++++|++.+ ..+.+++++||||||++
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHER 188 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSC
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccC
Confidence 44544333333322 4677999999543 24789999999999986
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.49 E-value=1e-13 Score=153.99 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccC-ccEEEecC
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldip-v~~VI~~~ 316 (564)
.+.++||+ |++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI-KVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC-CeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 44667777 89999999999999876 89999999999999999999999 9999999999999999998 99999999
Q ss_pred ccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 317 ~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
..+|.- |.|..+|+||+|||||.+. |.|+.+.+..
T Consensus 522 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~ 556 (661)
T 2d7d_A 522 ADKEGF----LRSERSLIQTIGRAARNAE----GRVIMYADKI 556 (661)
T ss_dssp TTCCTT----TTSHHHHHHHHHTTTTSTT----CEEEEECSSC
T ss_pred cccccC----CCCHHHHHHHhCcccCCCC----CEEEEEEeCC
Confidence 865432 5689999999999999854 9999887654
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.45 E-value=1.4e-13 Score=137.16 Aligned_cols=132 Identities=12% Similarity=0.038 Sum_probs=94.3
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-CCEEEEccHHHHHHHHHHHHHhcCC----eeEE
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-SSGIYCGPLRLLAWEVAKRLNKANV----SCDL 130 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~----~~-~~~li~~P~r~La~q~~~~l~~~g~----~~~~ 130 (564)
.+++.|. +++.+.. +++.++++|||||||+++...+. .+ ++++|++|+++|+.|+++++.+++. .+..
T Consensus 113 ~l~~~Q~~ai~~~l~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHH--HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHh--cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 6888899 8887744 57788999999999999754433 23 4899999999999999999997643 4566
Q ss_pred EeCcccccc---CCCceEEEcceecc-----ccCcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCc
Q 008489 131 ITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (564)
Q Consensus 131 ~~G~~~~~~---~~~~~i~~T~e~~~-----~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~ 199 (564)
+.|+..... .+..++++|++.+. .+.+++++|+||||.+.. ..+..++-.+.. ..++++.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~-~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLNN-CMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-CCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-CCeEEEEeCCC
Confidence 666544322 46789999996542 368899999999999973 244444443322 34445544444
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.45 E-value=3.9e-13 Score=130.42 Aligned_cols=108 Identities=24% Similarity=0.183 Sum_probs=89.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCe-eEEEeCccc
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQER 136 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~-~~~~~G~~~ 136 (564)
..+++.|. +++.+ +++++++++||||+|||++++..+.. .++++|++|+++|+.|+++.+.++++. +..++|+..
T Consensus 92 ~~l~~~Q~~ai~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 92 ISLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp CCCCHHHHHHHHHH--TTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCcCHHHHHHHHHH--HhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 36788888 88876 45778999999999999998766655 468899999999999999999999998 888888765
Q ss_pred cccCCCceEEEcceeccc-----cCcccEEEEccccccCCC
Q 008489 137 EEVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCK 172 (564)
Q Consensus 137 ~~~~~~~~i~~T~e~~~~-----l~~~~~vViDEaH~~~~~ 172 (564)
. ...++++|++.+.. ..++++|||||+|.+.+.
T Consensus 170 ~---~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 170 E---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp C---CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT
T ss_pred C---cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCCh
Confidence 3 57889999865422 256999999999999754
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.37 E-value=1.7e-12 Score=128.31 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=79.8
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHHhCCCCCee-EEEeccccccccccC-ccEEE
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFD-VLVASDAIGMGLNLN-ISRII 313 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~-VlVaT~~~~~Gldip-v~~VI 313 (564)
....+|||. ++..++.+...|.+. +. .+..+||+++.++|.++++.|++++ ..+ +|++|+++++|+|++ +++||
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI 188 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVI 188 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCS-CCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEE
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEE
Confidence 345667766 689999999999875 55 7999999999999999999999831 455 799999999999997 99999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~~ 359 (564)
+++. |.+++.+.||+||++|.|+. ....+|.+...+
T Consensus 189 ~~d~---------~wnp~~~~Q~~gR~~R~Gq~-~~v~v~~li~~~ 224 (271)
T 1z5z_A 189 HFDR---------WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 224 (271)
T ss_dssp ECSC---------CSCTTTC---------------CCEEEEEEETT
T ss_pred EECC---------CCChhHHHHHHHhccccCCC-CceEEEEEeeCC
Confidence 9999 77999999999999999986 335567775544
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.92 E-value=9.9e-10 Score=119.68 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCCCccc-cchHHH-h-cCCceEEEEccCCccHHHHHHHH-HHcCCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEe
Q 008489 61 DLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSR-LESSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132 (564)
Q Consensus 61 ~~~~~q~-~~p~~~-~-~~~~~viv~apTGsGKT~~~~~~-l~~~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~ 132 (564)
.+++.|. ....+. . ..++++++.+|||+|||.+++.. +...++++|++||++|+.|+.+.+..+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 4566676 333221 1 36899999999999999998544 445678999999999999999988865 67777777
Q ss_pred Cc
Q 008489 133 GQ 134 (564)
Q Consensus 133 G~ 134 (564)
|.
T Consensus 83 gr 84 (551)
T 3crv_A 83 GK 84 (551)
T ss_dssp CH
T ss_pred cc
Confidence 73
No 93
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=106.55 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=95.6
Q ss_pred HHHHH-hcccCCCccccCHHHHHHHHHHhccCCCCHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhcCccchhhhc-cC
Q 008489 403 EHFLE-NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF-TP 480 (564)
Q Consensus 403 ~~f~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~lt~~~~~~~~~~P~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~-~~ 480 (564)
..|.+ +++|+...+..+++.|..+|++++++.+|..|+.+..+ | .||.++++|+.++...|..++++|++++ .+
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~l-P---l~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~ 81 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEF-P---LEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTS-C---SCHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhC-C---CCHHHHHHHHHhhhcCCHHHHHHHHHHHCCC
Confidence 34777 88999999999999999999999999999999999999 9 6999999999999999999999999888 46
Q ss_pred CCCCCCCcHHHHHHH--------HHHH-HHHHHH----------HHhhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 008489 481 GTLQVPKTQAALREL--------ESIH-KVLDLY----------VWLSFRLEESFPDRELAASQKAICSMLIEE 535 (564)
Q Consensus 481 ~~~~~~~~~~~l~~l--------e~~~-~~~~~y----------~wl~~r~~~~f~~~~~~~~~~~~~~~~i~~ 535 (564)
+||..|.+.....+- ++.| ..+.+| .||...| ..+..+..+.++|.++.+++++
T Consensus 82 ~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~f-L~~~~l~~~~~ir~QL~~~l~~ 154 (270)
T 3i4u_A 82 NVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENF-IQARSLRRAQDIRKQMLGIMDR 154 (270)
T ss_dssp CCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTT-BCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 678777654332221 2333 455555 5676665 5555667788888888877653
No 94
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.28 E-value=4.8e-06 Score=91.78 Aligned_cols=67 Identities=18% Similarity=0.330 Sum_probs=52.4
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~---~~l~--~~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
..+++.|. ++..+ +.+..++|.||+|+|||+.+. ..+. ...++++++|+..++.++.+++.+.|.++
T Consensus 179 ~~ln~~Q~~av~~~--l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 179 PDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp CCCCHHHHHHHHHH--HTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred CCCCHHHHHHHHHH--hcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 45666677 66666 457889999999999999853 3333 34688999999999999999998777654
No 95
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=6.2e-06 Score=93.10 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HH--cCCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l~--~~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
+..+++.|. ++..+ +.+..++|.||+|||||+.+... +. ...++++++|+..++.++.+++.+.|.++
T Consensus 358 ~~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHV--LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHH--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 345666777 77666 45788999999999999985332 33 46789999999999999999999877654
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.19 E-value=3.6e-06 Score=93.31 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~----~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
..+++.|. ++..+.. .+...+|.||+|||||+.+. +.+..+.++++++||..++.++.+++...+.++
T Consensus 188 ~~LN~~Q~~AV~~al~-~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~i 260 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS-QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 260 (646)
T ss_dssp TTCCHHHHHHHHHHHH-CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHHHhc-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCce
Confidence 34666777 7776642 35689999999999999853 334456789999999999999999998776654
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.15 E-value=5.9e-06 Score=90.71 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHH-----cCCCEEEEccHHHHHHHHHHHHHh
Q 008489 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLE-----SSSSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 63 ~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~---~~~l~-----~~~~~li~~P~r~La~q~~~~l~~ 123 (564)
++.|. +++.+ +.++++++.|++|||||+.+ +..+. .+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~--l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHH--HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 45677 88887 56899999999999999774 23333 123788999999999999887753
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.09 E-value=1.7e-05 Score=89.55 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=52.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHHc--CCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~---~~l~~--~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
..++..|. ++..+ +.+..++|.||+|+|||+.+. ..+.. ..++++++|+..+|.++.+++.+.|+++
T Consensus 355 ~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHH--HTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHh--ccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 34566676 66665 457889999999999999853 33343 4688999999999999999998877654
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=1.6e-05 Score=84.38 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=77.0
Q ss_pred cCCCCCCccc-cchHHHhc---CCceEEEEccCCccHHHHH---HHHHHcCC--CEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 58 DFTDLTRPHT-WYPLARKK---VRKVILHVGPTNSGKTHQA---LSRLESSS--SGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 58 ~~~~~~~~q~-~~p~~~~~---~~~~viv~apTGsGKT~~~---~~~l~~~~--~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
.+.++++.|+ ++..+... ....+++.|+.|||||+.+ ...+...+ ++++++||..+|..+.+++ |..+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~---~~~~ 98 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS---GKEA 98 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH---SSCE
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh---ccch
Confidence 4778888887 66654322 2349999999999999985 34444443 5788899999998888776 3333
Q ss_pred EEEeCccc---cccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhcc--CccceEEEccCCC
Q 008489 129 DLITGQER---EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198 (564)
Q Consensus 129 ~~~~G~~~---~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l--~~~~~~l~~~~~~ 198 (564)
..++.--. ....... .+ .......+.+++++||||+|++... . ...++.+ ....+.++|+..-
T Consensus 99 ~T~h~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~iiiDE~~~~~~~----~-~~~l~~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 99 STIHSILKINPVTYEENV-LF-EQKEVPDLAKCRVLICDEVSMYDRK----L-FKILLSTIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp EEHHHHHTEEEEECSSCE-EE-EECSCCCCSSCSEEEESCGGGCCHH----H-HHHHHHHSCTTCEEEEEECTTS
T ss_pred hhHHHHhccCcccccccc-hh-cccccccccCCCEEEEECchhCCHH----H-HHHHHHhccCCCEEEEECCHHH
Confidence 32221100 0000111 11 1112234578999999999987532 2 2223222 2345667776543
No 100
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.84 E-value=2.3e-05 Score=81.49 Aligned_cols=107 Identities=24% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecc--
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD-- 153 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~-- 153 (564)
..+..++.|+.|||||+.+...+. ..+.++++||++++.++.+++.+.|.. .....-+.|.+.+-
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~-~~~~lVlTpT~~aa~~l~~kl~~~~~~------------~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN-FEEDLILVPGRQAAEMIRRRANASGII------------VATKDNVRTVDSFLMN 226 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC-TTTCEEEESCHHHHHHHHHHHTTTSCC------------CCCTTTEEEHHHHHHT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc-cCCeEEEeCCHHHHHHHHHHhhhcCcc------------ccccceEEEeHHhhcC
Confidence 467899999999999999876553 367799999999999999998654321 11223356654431
Q ss_pred cc----CcccEEEEccccccCCCCCcchHHHHHhccCccceEEEccCCCc
Q 008489 154 VV----SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (564)
Q Consensus 154 ~l----~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~~~~~~l~~~~~~~ 199 (564)
.. ..++++||||+.++.. |.. ..++.......+.++|++.-+
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~---~~l-~~l~~~~~~~~vilvGD~~Ql 272 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHT---GCV-NFLVEMSLCDIAYVYGDTQQI 272 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCH---HHH-HHHHHHTTCSEEEEEECTTSC
T ss_pred CCCCCCCcCCEEEEeCcccCCH---HHH-HHHHHhCCCCEEEEecCcccc
Confidence 11 2389999999998742 222 222223445677778876544
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.77 E-value=8.4e-05 Score=80.79 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcc
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~---~~l~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~ 135 (564)
.+++.|. ++..+ ..++.+++.||.|+|||+.+. ..+. .+.++++++||..+|..+.+.+ |.....++.--
T Consensus 189 ~L~~~Q~~Av~~~--~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~---~~~a~Tih~ll 263 (574)
T 3e1s_A 189 GLSEEQASVLDQL--AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT---GRTASTVHRLL 263 (574)
T ss_dssp TCCHHHHHHHHHH--TTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH---TSCEEEHHHHT
T ss_pred CCCHHHHHHHHHH--HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh---cccHHHHHHHH
Confidence 3566677 77766 568999999999999999852 2222 4567889999999998887765 22222221110
Q ss_pred ccccCCCceEEEcceeccccCcccEEEEccccccCCCCCcchHHHHHhccC-ccceEEEccCCC
Q 008489 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 198 (564)
Q Consensus 136 ~~~~~~~~~i~~T~e~~~~l~~~~~vViDEaH~~~~~~rg~~~~~~ll~l~-~~~~~l~~~~~~ 198 (564)
.... . -+ ........+++++||||++++... .+..++-.+. ...+.++|+..-
T Consensus 264 ~~~~--~--~~--~~~~~~~~~~dvlIIDEasml~~~----~~~~Ll~~~~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 264 GYGP--Q--GF--RHNHLEPAPYDLLIVDEVSMMGDA----LMLSLLAAVPPGARVLLVGDTDQ 317 (574)
T ss_dssp TEET--T--EE--SCSSSSCCSCSEEEECCGGGCCHH----HHHHHHTTSCTTCEEEEEECTTS
T ss_pred cCCc--c--hh--hhhhcccccCCEEEEcCccCCCHH----HHHHHHHhCcCCCEEEEEecccc
Confidence 0000 0 00 000112347899999999998632 2223332232 235667776543
No 102
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.72 E-value=3.4e-05 Score=84.80 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhc----CCeeEEEeC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITG 133 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~-----~~~~~li~~P~r~La~q~~~~l~~~----g~~~~~~~G 133 (564)
+++++++.+|||+|||.+++..++ .+++++|++||++++.|+.+.+..+ ++++..++|
T Consensus 21 ~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 21 KSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 589999999999999999754433 2578999999999999999888743 566665555
No 103
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.37 E-value=0.00035 Score=65.37 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=46.1
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
..++..++.||.|||||+.++..+. .+.+++++.|...--..-..-....|+......-. .. .+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~------~~------~~ 93 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVS------AS------KD 93 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECS------SG------GG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecC------CH------HH
Confidence 3478899999999999999876654 34678888887542110001111223221111000 00 13
Q ss_pred eccccC-cccEEEEccccccCCC
Q 008489 151 MADVVS-DYDCAVIDEIQMLGCK 172 (564)
Q Consensus 151 ~~~~l~-~~~~vViDEaH~~~~~ 172 (564)
.+.... ++++|+|||+|-+...
T Consensus 94 ~~~~~~~~~dvViIDEaQF~~~~ 116 (214)
T 2j9r_A 94 IFKHITEEMDVIAIDEVQFFDGD 116 (214)
T ss_dssp GGGGCCSSCCEEEECCGGGSCTT
T ss_pred HHHHHhcCCCEEEEECcccCCHH
Confidence 333333 5999999999998643
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=9.7e-05 Score=68.00 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~ 110 (564)
+++..++.||.|+||||.+++.+. .+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 478899999999999999866553 34567888887
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.15 E-value=0.00018 Score=66.45 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.9
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r 111 (564)
.+++..++.||+|||||+.++..+. .+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3578999999999999999876554 345788888873
No 106
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.87 E-value=0.0005 Score=64.94 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=46.7
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHH--HHHHHHHHhcCCeeEEEeCccccccCCCceEEEc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLA--WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La--~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
..++..++.|+.|||||+.++..+. .+.+++++.|...-- ..+..+ .|+...... +..
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr---~G~~~~a~~-------------i~~ 80 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH---DRNTMEALP-------------ACL 80 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC--------------CEEEE-------------ESS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh---cCCeeEEEe-------------cCC
Confidence 3488999999999999999876654 345788888874311 122222 232221110 000
Q ss_pred -ceeccccCcccEEEEccccccC
Q 008489 149 -VEMADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 149 -~e~~~~l~~~~~vViDEaH~~~ 170 (564)
.+.+....++++|+|||+|-+.
T Consensus 81 ~~di~~~~~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 81 LRDVAQEALGVAVIGIDEGQFFP 103 (234)
T ss_dssp GGGGHHHHTTCSEEEESSGGGCT
T ss_pred HHHHHHHhccCCEEEEEchhhhh
Confidence 1233334779999999999985
No 107
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.85 E-value=0.0021 Score=60.00 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=46.6
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEc-c
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT-V 149 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T-~ 149 (564)
..+...++.||.|||||+.++..+. .+.+++++.|...--.....-....|..... +.+.. .
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a-------------~~v~~~~ 92 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA-------------INISKAS 92 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEE-------------EEESSGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceee-------------EEeCCHH
Confidence 3578999999999999998765543 3457888888643111100111122322111 11111 1
Q ss_pred eeccc-cCcccEEEEccccccCC
Q 008489 150 EMADV-VSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 150 e~~~~-l~~~~~vViDEaH~~~~ 171 (564)
+++.. ..++++|+|||||.+.+
T Consensus 93 di~~~i~~~~dvV~IDEaQFf~~ 115 (219)
T 3e2i_A 93 EIMTHDLTNVDVIGIDEVQFFDD 115 (219)
T ss_dssp GGGGSCCTTCSEEEECCGGGSCT
T ss_pred HHHHHHhcCCCEEEEechhcCCH
Confidence 22222 26789999999999875
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.82 E-value=0.0009 Score=60.87 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=44.3
Q ss_pred CCceEEEEccCCccHHHHHH---HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~-~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.++.+++.||+|+|||+.+- ..+. ..+..++..+...+...+...+...... +.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 94 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT----------------------KF 94 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS----------------------HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH----------------------HH
Confidence 37899999999999999962 2232 3453333344455555554444321110 22
Q ss_pred ccccCcccEEEEccccccC
Q 008489 152 ADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 152 ~~~l~~~~~vViDEaH~~~ 170 (564)
+..+.+.+++|+||++...
T Consensus 95 ~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp HHHHHTCSEEEEETCSSSC
T ss_pred HHHhcCCCEEEEeCCCCCc
Confidence 3334578999999998643
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.00017 Score=68.30 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.0
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r 111 (564)
..+..+++.||+|+||||.+++.+. .+.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4578999999999999999876553 234778877653
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.78 E-value=0.0022 Score=56.65 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceecccc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~~~l 155 (564)
.++.+++.||+|+|||+.+-. ++.... ..|.++..+.+...... ..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~----------------i~~~~~----~~g~~~~~~~~~~~~~~-------------~~~ 81 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA----------------WVAQAL----EAGKNAAYIDAASMPLT-------------DAA 81 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH----------------HHHHHH----TTTCCEEEEETTTSCCC-------------GGG
T ss_pred CCCEEEEECCCCCCHHHHHHH----------------HHHHHH----hcCCcEEEEcHHHhhHH-------------HHH
Confidence 578999999999999998521 111111 12333444433322111 335
Q ss_pred CcccEEEEccccccCC
Q 008489 156 SDYDCAVIDEIQMLGC 171 (564)
Q Consensus 156 ~~~~~vViDEaH~~~~ 171 (564)
.+.+++||||++.+.+
T Consensus 82 ~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGN 97 (149)
T ss_dssp GGCSEEEEESTTCCCS
T ss_pred hCCCEEEEeCccccCh
Confidence 6789999999998654
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.66 E-value=0.0043 Score=58.66 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+++.||+|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4688999999999999986
No 112
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.0013 Score=60.58 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=47.7
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccH---HHHHHHHHHHHHhcCCeeEEEeCccccccC
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPL---RLLAWEVAKRLNKANVSCDLITGQEREEVD 140 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~~P~---r~La~q~~~~l~~~g~~~~~~~G~~~~~~~ 140 (564)
..|......++..++.||.|||||+..++++ .++.+++|+-|. |-. .++..++.. ..++... ..
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~-~~~A~~~-~~------ 81 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN-TMEALPA-CL------ 81 (195)
T ss_dssp --------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHH-HSEEEEE-SS------
T ss_pred ccccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCC-cccceec-CC------
Confidence 3444444568899999999999998876655 345678888776 432 222222211 0111111 00
Q ss_pred CCceEEEcceeccccCcccEEEEcccccc
Q 008489 141 GAKHRAVTVEMADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 141 ~~~~i~~T~e~~~~l~~~~~vViDEaH~~ 169 (564)
..+......++++|+|||+|-+
T Consensus 82 -------~~d~~~~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 82 -------LRDVAQEALGVAVIGIDEGQFF 103 (195)
T ss_dssp -------GGGGHHHHHTCSEEEESSGGGC
T ss_pred -------HHHHHHhccCCCEEEEEchhhh
Confidence 0112223467899999999999
No 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.18 E-value=0.004 Score=57.59 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999986
No 114
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.06 E-value=0.02 Score=51.42 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..+.+++.||+|+|||+.+
T Consensus 42 ~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SSCEEEEESCGGGCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3578999999999999986
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.007 Score=60.54 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=41.4
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcceec
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~~ 152 (564)
...+++.||+|+|||+.+- ..+.. +...+++.. ..+..+....+.... .. ...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~---------~~-------------~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEHLKKGT---------IN-------------EFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHHHHHTC---------HH-------------HHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHHHcCc---------HH-------------HHH
Confidence 4679999999999999962 22333 345556543 333333333332210 00 001
Q ss_pred cccCcccEEEEccccccCC
Q 008489 153 DVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 153 ~~l~~~~~vViDEaH~~~~ 171 (564)
....+.++++|||+|.+..
T Consensus 94 ~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHHHTCSEEEEECGGGGTT
T ss_pred HHhcCCCEEEEcCcccccC
Confidence 1124478999999999864
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.92 E-value=0.021 Score=51.35 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..+.+++.||+|+|||+.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SSCEEEEECCTTSCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3577999999999999996
No 117
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.48 E-value=0.0085 Score=66.00 Aligned_cols=62 Identities=23% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HHcC-----CCEEEEccHHHHHHHHHHHHHhc
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LESS-----SSGIYCGPLRLLAWEVAKRLNKA 124 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l~~~-----~~~li~~P~r~La~q~~~~l~~~ 124 (564)
+..+++.|. ++. ..+..++|.|+.|||||+.+... ++.. .+++++.+++.+|.++.+++.+.
T Consensus 7 ~~~Ln~~Q~~av~----~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 7 LDSLNDKQREAVA----APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp HTTCCHHHHHHHT----CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHh----CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 456777777 554 23567899999999999997443 3332 37899999999999999999853
No 118
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.35 E-value=0.0093 Score=59.36 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=39.2
Q ss_pred CceEEEEccCCccHHHHH---HHHHH-cC-CCEEEE-ccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 77 RKVILHVGPTNSGKTHQA---LSRLE-SS-SSGIYC-GPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~---~~~l~-~~-~~~li~-~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
++++++.||||+|||+.+ ...+. .. .+++++ +| .+. ..+... .. .|. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~--~l~----~~l~~~-~~----~~~-------------~~~ 207 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP--SFA----IDVKNA-IS----NGS-------------VKE 207 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH--HHH----HHHHCC-CC---------------------CC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH--HHH----HHHHHH-hc----cch-------------HHH
Confidence 589999999999999985 23333 33 455554 33 232 233221 00 000 012
Q ss_pred eccccCcccEEEEcccccc
Q 008489 151 MADVVSDYDCAVIDEIQML 169 (564)
Q Consensus 151 ~~~~l~~~~~vViDEaH~~ 169 (564)
.+..+.+.+++||||++..
T Consensus 208 ~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 208 EIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp TTHHHHTSSEEEEETCCC-
T ss_pred HHHHhcCCCEEEEcCCCCC
Confidence 2344567889999999764
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.09 E-value=0.018 Score=60.22 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=41.9
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~---~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
.+.+++.||+|+|||+.+- ..+.. +.+.+++... .+..++...+..... ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~~~~~~~~----------------------~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMKEGKL----------------------NE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHHHHHTTCH----------------------HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHHHHcccH----------------------HH
Confidence 4689999999999999962 22222 3445555332 334444433332100 01
Q ss_pred eccccC-cccEEEEccccccCC
Q 008489 151 MADVVS-DYDCAVIDEIQMLGC 171 (564)
Q Consensus 151 ~~~~l~-~~~~vViDEaH~~~~ 171 (564)
....+. +.++++|||+|.+..
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSS
T ss_pred HHHHhcCCCCEEEEeCcccccC
Confidence 112223 678999999999874
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.035 Score=56.54 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 568999999999999996
No 121
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.90 E-value=0.011 Score=58.37 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+.++++.||+|+|||+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999987
No 122
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.89 E-value=0.031 Score=55.95 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
...+++.||+|+|||+.+-.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 35799999999999998743
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.75 E-value=0.063 Score=53.53 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.+++.||+|+|||+.+-.
T Consensus 51 ~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 56799999999999999743
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.45 E-value=0.048 Score=55.31 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..+.+++.||+|+|||+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.084 Score=53.42 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.++.+++.||+|+|||+.+-
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999999963
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.28 E-value=0.067 Score=52.04 Aligned_cols=20 Identities=45% Similarity=0.459 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
..+.+++.||+|+|||+.+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 46789999999999999874
No 127
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.25 E-value=0.036 Score=55.03 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.7
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
...+++.||+|+|||+.+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999999873
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.18 E-value=0.13 Score=50.20 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
..+.+++.||+|+|||+.+-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 36789999999999999873
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.00 E-value=0.12 Score=51.48 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.+++.||+|+|||+.+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 57899999999999998743
No 130
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.96 E-value=0.1 Score=52.76 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.0
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.+++.||+|+|||+.+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46799999999999999743
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.71 E-value=0.017 Score=57.68 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+.+++.||+|+|||+.+-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SEEEECSSTTSSHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHH
Confidence 4577888899999999744
No 132
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.64 E-value=0.25 Score=50.48 Aligned_cols=108 Identities=11% Similarity=0.025 Sum_probs=65.1
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHH-----HHHcC-CCEEEEccHHHHHHHHHHHHHhc----C--Ce
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS-----RLESS-SSGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~-----~l~~~-~~~li~~P~r~La~q~~~~l~~~----g--~~ 127 (564)
.+.+.|. ++..+. .++.+++..+-+.|||+.+.. .+... .++++++|++.-|..+.+.++.+ . +.
T Consensus 163 ~L~p~Qk~il~~l~--~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS--SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHH--HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhc--cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 5677777 554432 357799999999999998522 12223 36788899999998888776632 1 11
Q ss_pred --eEEEeCccccccCCCceEEEcc--eeccccCcccEEEEccccccCC
Q 008489 128 --CDLITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 128 --~~~~~G~~~~~~~~~~~i~~T~--e~~~~l~~~~~vViDEaH~~~~ 171 (564)
.............++.+.+.+. ..+. -.+++++|+||+|...+
T Consensus 241 ~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-G~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVR-GNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECSHHHHH-TSCCSEEEEESGGGSTT
T ss_pred hhhccCCccEEEeCCCCEEEEEECCCCCcc-CCCCCEEEechhhhcCC
Confidence 1111222222223444444332 1111 24578999999999864
No 133
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.62 E-value=0.1 Score=56.95 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=65.9
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEecc--ccccccccC---ccEE
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN---ISRI 312 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~--~~~~Gldip---v~~V 312 (564)
+|.++||| |....+.+++.++. . ... ..-+++...|...++.|+ +.--||++|. .+..|||+| .+.|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~-~--~~~-~~q~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF-E--HMK-EYRGIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS-C--CEE-CCTTCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-c--chh-ccCCCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEE
Confidence 45566666 56666666555541 1 111 333445667889999998 3346999974 899999994 8899
Q ss_pred EecCccccCCc----------------c-----ccccCHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 313 IFSTMKKFDGV----------------E-----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 313 I~~~~~k~~~~----------------~-----~~p~s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
|..+++.-.+. . ..| ....+.|-+||+=|... +.|.++.+...
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~--D~G~v~llD~R 584 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAE--DTGACVILDKR 584 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTT--CCEEEEEECGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCC--ceEEEEEEccc
Confidence 99887653221 0 011 24557899999999765 46888887553
No 134
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.029 Score=60.04 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.2
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l 98 (564)
.+.+++.||+|+|||+.+-...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999974433
No 135
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.48 E-value=0.056 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=18.5
Q ss_pred cCCceEEEEccCCccHHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~ 97 (564)
|+++.++|.||||||||+.+...
T Consensus 1 m~~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCcCCHHHHHHHH
Confidence 34678999999999999987553
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.46 E-value=0.14 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.0
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
..+.+++.||+|+|||+.+-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 467899999999999999743
No 137
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.43 E-value=0.05 Score=60.71 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 008489 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 59 ~~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~---l~~-~----~~~li~~P~r~La~q~~~~l~~ 123 (564)
+..+++.|. ++.. ....++|.|+.|||||++.... ++. . .+++++..|+.+|.++.+|+.+
T Consensus 9 l~~Ln~~Q~~av~~----~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp HTTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHhC----CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 355777776 4432 3567899999999999996433 333 2 3689999999999999999874
No 138
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.40 E-value=0.05 Score=60.18 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=43.5
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH---H-c----CCCEEEEccHHHHHHHHHHHHHh
Q 008489 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL---E-S----SSSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 62 ~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l---~-~----~~~~li~~P~r~La~q~~~~l~~ 123 (564)
+++.|. ++.. .+..++|.|+.|||||++....+ + + ..+++++..|+.+|.++.+|+.+
T Consensus 3 L~~~Q~~av~~----~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 3 LNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 455555 4332 36789999999999999964432 2 2 24689999999999999999984
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.16 E-value=0.079 Score=55.01 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCceEEEEccCCccHHHHHH---HHHH-cCCCEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~-~~~~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
.+.+++++||+|+||||.+. ..+. .+++++++ -+.|..+.+....+. ..|+++... .... .+.-++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~--~~~~----dp~~i~- 168 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE--PNNQ----NPIEIA- 168 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECC--TTCS----CHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeec--cccC----CHHHHH-
Confidence 36789999999999999952 2232 34566555 356666655555554 346554321 1100 000000
Q ss_pred ceecccc--CcccEEEEccccccC
Q 008489 149 VEMADVV--SDYDCAVIDEIQMLG 170 (564)
Q Consensus 149 ~e~~~~l--~~~~~vViDEaH~~~ 170 (564)
...+... ..++++|||++-...
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHhcCCCEEEEECCCCcc
Confidence 0111222 589999999996543
No 140
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.01 E-value=0.057 Score=58.89 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=59.9
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~ 138 (564)
.+|.-|+ ++..+........++.|+-|.|||+.+-..+.. .++++|++|+...+..+.+...+ .
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~-~------------- 240 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE-K------------- 240 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG-G-------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC-C-------------
Confidence 4555566 666554444567899999999999885333322 25678999999988766654432 0
Q ss_pred cCCCceEEEccee-ccccCcccEEEEccccccC
Q 008489 139 VDGAKHRAVTVEM-ADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 139 ~~~~~~i~~T~e~-~~~l~~~~~vViDEaH~~~ 170 (564)
+-++.|.. .......+++|||||=++.
T Consensus 241 -----i~~~~Pd~~~~~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 241 -----FRFIAPDALLASDEQADWLVVDEAAAIP 268 (671)
T ss_dssp -----CCBCCHHHHHHSCCCCSEEEEETGGGSC
T ss_pred -----eEEeCchhhhhCcccCCEEEEEchhcCC
Confidence 22223322 2345679999999999886
No 141
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.89 E-value=0.051 Score=49.15 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.0
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..++.++++||+||||||.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45889999999999999986
No 142
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.80 E-value=0.095 Score=62.09 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=45.6
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC------CCEEEEccHHHHHHHHHHHHHh
Q 008489 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS------SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 60 ~~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~~l----~~~------~~~li~~P~r~La~q~~~~l~~ 123 (564)
..+++-|. ++- ..+++++|.|..|||||++..+.+ ..+ .+++++.+|+.+|.++.+|+.+
T Consensus 9 ~~~t~eQ~~~i~----~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV----STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH----CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 35666666 443 247899999999999999975543 222 2679999999999999999875
No 143
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.74 E-value=0.32 Score=52.83 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=64.7
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCccHHHHHHH----HHH-cCC-CEEEEccHHHHHHHHHHHHHhc----C--Ce
Q 008489 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLE-SSS-SGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (564)
Q Consensus 61 ~~~~~q~-~~p~~~~~~~~~viv~apTGsGKT~~~~~----~l~-~~~-~~li~~P~r~La~q~~~~l~~~----g--~~ 127 (564)
.+.+.|. ++..+ -..+.+++.++-|+|||+.+.. .+. ..+ +++++.|++..|.++.+.++.+ + +.
T Consensus 163 ~l~p~Q~~i~~~l--~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHHH--HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHhh--ccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 4677777 55443 2357799999999999998521 222 333 6788899999999998877632 1 11
Q ss_pred e--EEEeCccccccCCCceEEEcc--eeccccCcccEEEEccccccCC
Q 008489 128 C--DLITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (564)
Q Consensus 128 ~--~~~~G~~~~~~~~~~~i~~T~--e~~~~l~~~~~vViDEaH~~~~ 171 (564)
. ...+........+..+.+.+. ..+.. .+.+++|+||+|...+
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG-~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVRG-NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHHHH-SCCSEEEEETGGGCTT
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCccC-CCcceEEEehhccCCc
Confidence 1 111112222222333333321 11112 3578999999999864
No 144
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.62 E-value=0.081 Score=52.88 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=17.4
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
++.++|+||||||||+.+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999998754
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.62 E-value=0.27 Score=49.75 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=15.3
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.||+|+|||+.+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999996
No 146
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.49 E-value=0.098 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
..++.+++.||||+|||+.++.....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45888999999999999988765433
No 147
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.37 E-value=0.23 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
..+.+++.||+|+|||+.+-.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357899999999999999743
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.11 E-value=0.074 Score=47.62 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.++.++++|+.||||||.+-
T Consensus 2 ~~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35789999999999999973
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.96 E-value=0.12 Score=48.72 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=33.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANV 126 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~ 126 (564)
.+..+++.||+|+|||+.+.+.+. .+++++|+.-. ....++.+++...|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-~~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-EHPVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-SCHHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHHHHcCC
Confidence 478999999999999999765443 35677777321 123556666665554
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.94 E-value=0.073 Score=48.09 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.|+.||||||++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.25 Score=48.79 Aligned_cols=20 Identities=25% Similarity=0.072 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+..++.||.|+|||+.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLE 37 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45799999999999998743
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.73 E-value=0.06 Score=54.46 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999996
No 153
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.72 E-value=0.084 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.2
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
.++.++++||+||||||.+-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 578899999999999998743
No 154
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.62 E-value=0.086 Score=45.76 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+.++++.||+|+|||+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 5678999999999999987
No 155
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=91.55 E-value=0.51 Score=50.67 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=69.5
Q ss_pred cCCCeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEec--cccccccccC------
Q 008489 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS--DAIGMGLNLN------ 308 (564)
Q Consensus 238 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT--~~~~~Gldip------ 308 (564)
.+|.++||| |.+..+.+++. ....+..-..+++.+ +..+.|+. +.--|++|| ..+..|||+|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~~~---~~~~~~~~--~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSSVE---DLYSAISA--NNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCCHH---HHHHHTTS--SSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred CCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCCHH---HHHHHHHh--cCCeEEEEEecceecccccccccCCcc
Confidence 356667766 66666666541 222333333345554 67778864 223699998 6999999998
Q ss_pred ccEEEecCccccCCc--------------cc-cc---c---CHhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 008489 309 ISRIIFSTMKKFDGV--------------EL-RD---L---TVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (564)
Q Consensus 309 v~~VI~~~~~k~~~~--------------~~-~p---~---s~~~~~Qr~GRaGR~g~~~~~G~~~~l~~~ 358 (564)
.+.||..+++.-... .. .+ . -...+.|-+||+=|... +.|.++.+.+.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~--D~G~v~llD~R 531 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVN--DKCNVWLLDKR 531 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTT--CEEEEEEESGG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCC--ccEEEEEeehh
Confidence 678998887642221 00 11 1 34557899999999865 46888888653
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.34 E-value=0.34 Score=48.41 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||.|+|||+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIY 42 (334)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred eeEEEECCCCchHHHHHH
Confidence 459999999999999973
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.30 E-value=0.089 Score=50.80 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=18.0
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++|||||||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46889999999999999985
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.25 E-value=0.1 Score=47.88 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.+.||+||||||.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5789999999999999986
No 159
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.19 E-value=0.14 Score=50.41 Aligned_cols=20 Identities=50% Similarity=0.700 Sum_probs=17.0
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.++|+||||||||+.+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHH
Confidence 45789999999999998754
No 160
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.14 E-value=0.11 Score=47.95 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.6
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~ 95 (564)
++++.++++||+|+|||+.+-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 468999999999999999863
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.08 E-value=0.093 Score=45.43 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.||+|+|||+.+
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 4678999999999999986
No 162
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.07 E-value=0.1 Score=47.29 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
.++..++++||+||||||.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35789999999999999986
No 163
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.06 E-value=0.11 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.++++||+||||||.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999997
No 164
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.99 E-value=0.11 Score=46.92 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.++++|++||||||++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999999973
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.99 E-value=0.1 Score=46.16 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=19.2
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCE
Q 008489 78 KVILHVGPTNSGKTHQALSRLESSSSG 104 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~~~~~ 104 (564)
..+++.||+||||||++-.. ...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 46899999999999997443 444433
No 166
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.91 E-value=0.11 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=18.0
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
+.+++++.||+||||+|++-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999999743
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.81 E-value=0.12 Score=47.41 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..+.++||+||||||.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999986
No 168
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.78 E-value=0.11 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.+..+++.|++||||||++-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 46789999999999999973
No 169
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.70 E-value=0.16 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=32.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc-----CCCEEEEccHHHHHHHHHHHHHhcC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNKAN 125 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~-----~~~~li~~P~r~La~q~~~~l~~~g 125 (564)
.+..+++.|++|+|||+.+++.+.+ +..++|+.- -.-..++.+++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~-E~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL-EERARDLRREMASFG 82 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES-SSCHHHHHHHHHTTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc-cCCHHHHHHHHHHcC
Confidence 4789999999999999998775532 346666631 122455666666544
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.53 E-value=0.11 Score=47.80 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+.++||+||||||.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999996
No 171
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.53 E-value=0.12 Score=46.15 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.1
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
++..+.++||+||||||.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 58899999999999999974
No 172
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.52 E-value=0.39 Score=52.88 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=43.6
Q ss_pred ceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc--CCeeEEEe
Q 008489 78 KVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA--NVSCDLIT 132 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~--g~~~~~~~ 132 (564)
+...+.|-||||||+.+...+.+ .+..||++|...+|.|++..++.+ +..|.+..
T Consensus 33 ~~~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fp 90 (661)
T 2d7d_A 33 KHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFV 90 (661)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CcEEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEcc
Confidence 35678899999999998766655 567899999999999999999976 23454444
No 173
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.34 E-value=0.14 Score=46.25 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=28.3
Q ss_pred EEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHH
Q 008489 80 ILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 80 viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~~l~ 122 (564)
++|.|++|||||+-+.+....+.+++|+..-...-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHH
Confidence 7899999999999998877664578888654333345555554
No 174
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.25 E-value=0.14 Score=48.30 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=18.3
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHH
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~~ 95 (564)
+.|..+......+++.|++||||||++-
T Consensus 7 ~~p~~~~~~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 7 AEPVPESPKGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp -------CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3454444556789999999999999973
No 175
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.20 E-value=0.13 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.++++||+||||||.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4788999999999999986
No 176
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.18 E-value=0.12 Score=55.05 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+.+++++|||||||||..
T Consensus 259 ~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999985
No 177
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.10 E-value=0.13 Score=49.45 Aligned_cols=17 Identities=53% Similarity=0.577 Sum_probs=15.0
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.++++|||||||||.+
T Consensus 2 ~li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999976
No 178
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.09 E-value=0.14 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=18.1
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~ 95 (564)
+.++.+++.|++||||||++-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999999974
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.00 E-value=0.13 Score=46.55 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+.+.||+||||||.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999985
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.92 E-value=0.13 Score=46.36 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.+..+++.|+.||||||++-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999973
No 181
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.89 E-value=0.15 Score=45.41 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++||.||||||.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 34788999999999999986
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.88 E-value=0.24 Score=60.57 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~ 110 (564)
.++++++.||+|+|||+.+.+.+. .+++++|+..-
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 478999999999999999865543 34678888543
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.77 E-value=0.3 Score=46.09 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCceEEEEccCCccHHHHHHHH----H-HcCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSR----L-ESSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~----l-~~~~~~li~ 107 (564)
.|..+.+.||+||||||.+-.. + ...+.++++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5899999999999999996322 2 345556555
No 184
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.77 E-value=0.22 Score=49.46 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.7
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.++++||||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35799999999999998743
No 185
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.74 E-value=0.27 Score=48.92 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~ 107 (564)
.+..+++.||+|+|||+.+.+.+.. +++++|+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi 147 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI 147 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEE
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEE
Confidence 4789999999999999998776653 3467777
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.73 E-value=0.15 Score=45.31 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+++.||.||||||.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999996
No 187
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.72 E-value=0.19 Score=49.56 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCEEE
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGIY 106 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~~~~~~li 106 (564)
+|+.+.++||+||||||.+ +..++ .|+++.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~ 156 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLS 156 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEE
Confidence 5889999999999999995 44455 565543
No 188
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.58 E-value=0.17 Score=46.53 Aligned_cols=20 Identities=40% Similarity=0.405 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
|++..+++.|+.||||||++
T Consensus 2 m~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 35678999999999999997
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.58 E-value=0.17 Score=45.74 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..++++|++||||||++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999997
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.56 E-value=0.16 Score=45.26 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
..+++.|++||||||.+-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 5689999999999999743
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.50 E-value=0.18 Score=46.30 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.||.||||||.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4789999999999999996
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.40 E-value=0.44 Score=54.16 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..++++++||+|+|||+.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp SCCCCEEEECTTSCHHHHH
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4567999999999999986
No 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.37 E-value=0.16 Score=44.81 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.3
Q ss_pred eEEEEccCCccHHHHHH
Q 008489 79 VILHVGPTNSGKTHQAL 95 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~ 95 (564)
.+++.|+.||||||++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999973
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.20 E-value=0.3 Score=45.05 Aligned_cols=32 Identities=31% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH-cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE-SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~-~~~~~li~ 107 (564)
.+..+++.||+|+|||+.+.+... .+++++|+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 478999999999999999765443 34566666
No 195
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.15 E-value=0.18 Score=45.49 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.|+.||||||++
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578999999999999997
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.99 E-value=0.2 Score=50.58 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++|||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45779999999999999995
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.95 E-value=0.17 Score=51.35 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..++++|||||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEEEEESSSSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 6899999999999999985
No 198
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.90 E-value=0.2 Score=45.40 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
++..+++.|+.||||||++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999973
No 199
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.80 E-value=0.18 Score=51.36 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++|||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999995
No 200
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.79 E-value=0.2 Score=45.84 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
.++..+.+.||.||||||.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35789999999999999996
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.76 E-value=0.25 Score=59.60 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEccee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~e~ 151 (564)
.++.+.+.||.|||||+.+++.+. .++.++|+.+--+|.... ++++|+... ++++..|..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------~l~~~~p~~ 1493 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID-------------NLLCSQPDT 1493 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG-------------GCEEECCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHH-------------HeEEeCCCc
Confidence 368999999999999999987774 457889997765555443 456676542 245555522
Q ss_pred c-------c---ccCcccEEEEccccccC
Q 008489 152 A-------D---VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 152 ~-------~---~l~~~~~vViDEaH~~~ 170 (564)
. + .-..+++||||.+--+.
T Consensus 1494 ~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1494 GEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 1 1 12679999999987764
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.73 E-value=0.2 Score=46.81 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+.++||+||||||.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999986
No 203
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.73 E-value=0.81 Score=45.09 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=45.8
Q ss_pred CCceEEEEccCCccHHHHHH--H-HHH-cCCCEEEE--ccHHHHHHH-HHHHHHhcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQAL--S-RLE-SSSSGIYC--GPLRLLAWE-VAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~--~-~l~-~~~~~li~--~P~r~La~q-~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
.++.++++||+|+||||.+. . .+. .+++++++ =+.|..+.+ +.......|+++. ..... ..+..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~s~----~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI--SHSEG----ADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE--CCSTT----CCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEE--ecCCc----cCHHHHHH
Confidence 46789999999999999952 2 222 35567665 344544433 3333334565541 11110 00000000
Q ss_pred ceec-cccCcccEEEEccccc
Q 008489 149 VEMA-DVVSDYDCAVIDEIQM 168 (564)
Q Consensus 149 ~e~~-~~l~~~~~vViDEaH~ 168 (564)
..+. ....+++++|+||+-.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 0011 1347899999999854
No 204
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.67 E-value=0.37 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.+..+.+.||+|+|||+.+.+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999866554
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.65 E-value=0.39 Score=53.72 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=15.1
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||||+|||+.+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 7999999999999986
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.63 E-value=0.22 Score=45.45 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
++..+++.|+.||||||++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999973
No 207
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.60 E-value=0.54 Score=42.16 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.|+.||||||++
T Consensus 2 ~~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999996
No 208
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.59 E-value=0.29 Score=48.99 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
+.++|+||||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 5799999999999998743
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.59 E-value=0.2 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=16.1
Q ss_pred eEEEEccCCccHHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~ 97 (564)
++++.||+||||+|++-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998543
No 210
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.49 E-value=0.23 Score=45.85 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
.+|+.+.+.||+||||||.+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999985
No 211
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.36 E-value=0.21 Score=46.16 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+.|.||+||||||.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5788999999999999985
No 212
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.23 E-value=0.24 Score=49.21 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.8
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
..+.+....+.++++.||+|+|||+.+
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 345555557889999999999999996
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.21 E-value=0.64 Score=48.22 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=35.1
Q ss_pred CceEEEEccCCccHHHHHH---HHHHcC-CCEEEE--ccHHHHHHHHHHHHH-hcCCee
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLESS-SSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~~-~~~li~--~P~r~La~q~~~~l~-~~g~~~ 128 (564)
..+++++|++|+||||.+. .++.+. .+++++ =|.|..|.+..+.+. ..|+++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 5789999999999999963 333343 466555 467777766665555 346654
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.20 E-value=0.45 Score=44.12 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.6
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l----~~~~~~li~ 107 (564)
.+..+++.||+|||||+.+...+ ..+++++|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999999964332 245677776
No 215
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.18 E-value=0.18 Score=52.35 Aligned_cols=87 Identities=24% Similarity=0.192 Sum_probs=45.3
Q ss_pred ceEEEEccCCccHHHHHHHH---H-HcCCCEEEE--ccHHHHHHHHHHHH-HhcCCeeEEEeCccccccCCCceEEEcce
Q 008489 78 KVILHVGPTNSGKTHQALSR---L-ESSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTVE 150 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~---l-~~~~~~li~--~P~r~La~q~~~~l-~~~g~~~~~~~G~~~~~~~~~~~i~~T~e 150 (564)
.+++++|++|+||||.+... + .++.+++++ =|.|..+.+..+.+ ...|+++....|.... ...+ ..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~d---p~~i---~~~ 173 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKS---PVDI---VKE 173 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCS---SSTT---HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCC---HHHH---HHH
Confidence 58999999999999996322 2 234566665 34443333222222 2345554332111000 0000 011
Q ss_pred eccccCcccEEEEccccccC
Q 008489 151 MADVVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 151 ~~~~l~~~~~vViDEaH~~~ 170 (564)
.+..+.+++++|||.+-...
T Consensus 174 ~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 174 GMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHTTSSCSEEEEECCCSCS
T ss_pred HHHHhhCCCEEEEcCCCCcc
Confidence 22234789999999997653
No 216
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.10 E-value=0.17 Score=47.62 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=13.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+.++||+||||||.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999986
No 217
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.02 E-value=0.22 Score=51.50 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..++++|||||||||..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHH
Confidence 45778999999999999984
No 218
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.98 E-value=0.28 Score=50.21 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.++|.||||||||+.+..
T Consensus 2 ~~~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHH
Confidence 35789999999999988743
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.90 E-value=0.32 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.+..+++.||+|+|||+.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887764
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.88 E-value=0.2 Score=45.23 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..++++||+||||||.+
T Consensus 2 g~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 467899999999999986
No 221
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.87 E-value=0.25 Score=45.51 Aligned_cols=19 Identities=47% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+.+.||+||||||.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.76 E-value=0.31 Score=49.15 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGP 109 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P 109 (564)
.+..+++.||+|||||+.+++.+. .+++++|+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999999865543 3567888843
No 223
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.74 E-value=0.25 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
-+++++.|+.||||||++
T Consensus 7 ~~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp -CEEEEESCTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 378999999999999997
No 224
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.68 E-value=0.25 Score=46.22 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
...+++.|++||||||++-.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999999743
No 225
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.48 E-value=0.28 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.+..+++.|+.||||||++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35689999999999999973
No 226
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.46 E-value=0.24 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...++++|+.||||||.+
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 358999999999999997
No 227
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.41 E-value=0.24 Score=49.55 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+.++|||||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEEESTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999974
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.39 E-value=0.58 Score=45.89 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCceEEEEccCCccHHHHHH--H-HHH-cCC-CEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEE
Q 008489 76 VRKVILHVGPTNSGKTHQAL--S-RLE-SSS-SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAV 147 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~--~-~l~-~~~-~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~ 147 (564)
++++++++||+|+||||.+. . .+. ..| +++++ -|.+..+.+....+. ..|+++.. .... ..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~~-----~~l--- 173 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYTK-----EEF--- 173 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSSH-----HHH---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCCH-----HHH---
Confidence 47899999999999999962 2 233 245 66555 345555544444333 33443211 0000 000
Q ss_pred cceeccccCcccEEEEccccc
Q 008489 148 TVEMADVVSDYDCAVIDEIQM 168 (564)
Q Consensus 148 T~e~~~~l~~~~~vViDEaH~ 168 (564)
...+..+.+++++|+|.+-.
T Consensus 174 -~~al~~~~~~dlvIiDT~G~ 193 (296)
T 2px0_A 174 -QQAKELFSEYDHVFVDTAGR 193 (296)
T ss_dssp -HHHHHHGGGSSEEEEECCCC
T ss_pred -HHHHHHhcCCCEEEEeCCCC
Confidence 01112347899999995543
No 229
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.39 E-value=0.27 Score=44.63 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+++.|++||||||++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999997
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.32 E-value=0.29 Score=45.75 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|+.++++||.||||||..
T Consensus 15 ~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 231
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.30 E-value=0.84 Score=44.71 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li~ 107 (564)
.++.+++.||+|+|||+.+-......+...+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999974333333444333
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.25 E-value=0.3 Score=44.04 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..+++.|+.||||||++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 35788999999999999986
No 233
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.18 E-value=0.3 Score=44.82 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.|+.||||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999996
No 234
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.16 E-value=0.3 Score=43.69 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.|+.||||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4788999999999999986
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.05 E-value=0.45 Score=54.06 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
..+++.||||+|||+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999986
No 236
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.04 E-value=0.29 Score=45.57 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+.+.||+||||||.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999997
No 237
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.98 E-value=0.21 Score=44.76 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=13.5
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
++..+++.|+.||||||++-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 467899999999999999743
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.94 E-value=0.3 Score=44.83 Aligned_cols=21 Identities=43% Similarity=0.294 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~ 95 (564)
..+..+.+.|++||||||.+-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346789999999999999863
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.92 E-value=1 Score=44.82 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCceEEEEccCCccHHHHH--HHHH--HcCCCEEEE-cc-HHHHHHHHHHHH-HhcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC-GP-LRLLAWEVAKRL-NKANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l--~~~~~~li~-~P-~r~La~q~~~~l-~~~g~~~ 128 (564)
++..+.++||+||||||.+ +..+ ..++++.+. .+ .|..+.+..+.+ ...|+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceE
Confidence 4789999999999999985 2222 235666555 33 233343333333 3456543
No 240
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.89 E-value=0.44 Score=49.45 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.3
Q ss_pred cCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAW 115 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P~r~La~ 115 (564)
..+.++++.|+||||||+.+ .+.+..+..++|+=|-.++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 45789999999999999985 233334556777788877753
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.84 E-value=0.32 Score=44.39 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.+..+++.|+.||||||++-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45689999999999999973
No 242
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.81 E-value=0.29 Score=45.25 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.4
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.+++.||.||||||++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999743
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.62 E-value=0.31 Score=43.82 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.|+.||||||++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3579999999999999973
No 244
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.54 E-value=0.31 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
...+++.|+.||||||++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999999973
No 245
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.52 E-value=0.3 Score=43.22 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.|+.||||||++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999997
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.52 E-value=0.51 Score=47.38 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=25.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----------~~~~li~ 107 (564)
.+..+++.||+|||||+.+.+.... +++++|+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi 162 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE
Confidence 4789999999999999998776653 3467777
No 247
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.45 E-value=0.99 Score=50.44 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=15.0
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||||+|||+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999986
No 248
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.43 E-value=0.3 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=17.9
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
.+..++++||+||||||.+-.
T Consensus 32 ~~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 357899999999999999743
No 249
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.38 E-value=0.33 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+++.|+.||||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999997
No 250
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.31 E-value=0.6 Score=47.66 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRL 112 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~----~~l~~~~~~li~~P~r~ 112 (564)
.+.++++.||||||||+.+- +....+++++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 57889999999999999852 23334567777766544
No 251
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.26 E-value=0.36 Score=44.35 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.|+.||||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999987
No 252
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.19 E-value=0.36 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
+...+++.||.||||||.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3578999999999999986
No 253
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.08 E-value=0.33 Score=43.55 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
..+++.|++||||||++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999997
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.05 E-value=0.36 Score=45.88 Aligned_cols=19 Identities=42% Similarity=0.457 Sum_probs=16.7
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||+|+|||+.+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999999873
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.02 E-value=0.33 Score=43.24 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.9
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.|+.||||||.+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999997
No 256
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.86 E-value=0.65 Score=43.13 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
|.+..+++.|+.||||||++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 67889999999999999996
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.85 E-value=0.76 Score=42.00 Aligned_cols=19 Identities=42% Similarity=0.302 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.+.|++||||||.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3678999999999999986
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.77 E-value=0.36 Score=43.87 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5889999999999986
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.68 E-value=0.37 Score=45.89 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999986
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.64 E-value=0.69 Score=46.53 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=25.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+++.||+|||||+.+++.+. .+++++|+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999866543 35678887
No 261
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.63 E-value=0.69 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
...+++.|+.||||||++-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999999743
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.56 E-value=0.59 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
.+..+.+.||+|||||+.+.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986554
No 263
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.50 E-value=0.35 Score=46.53 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.8
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
.+.+++.||+|+|||+.+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4689999999999999973
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.43 E-value=0.56 Score=42.62 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+-++++||+|+|||+..-
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999999763
No 265
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.37 E-value=0.57 Score=40.75 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.2
Q ss_pred CceEEEEccCCccHHHHH--HHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA--LSRLE 99 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~--~~~l~ 99 (564)
....++.||+|||||+.. +..++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999993 44444
No 266
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.36 E-value=0.41 Score=44.19 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..+++.|+.||||||++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999986
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.35 E-value=0.42 Score=43.47 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
+...+.+.|++||||||++-
T Consensus 7 ~~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35679999999999999973
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.35 E-value=0.49 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.1
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~ 97 (564)
.+..+.+.||+||||||.+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999997443
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.35 E-value=0.42 Score=45.21 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... ++..+. ++|++..+..+.+.+++ .+...-||++|--.+. ..+ ++.|+..
T Consensus 150 q~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~-~d~i~~l 218 (235)
T 3tif_A 150 QQQRVAIARALANNP--PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARF-GERIIYL 218 (235)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTT-SSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHh-CCEEEEE
Confidence 444455666665433 466664 78999988887777654 1112345666554442 222 6666644
No 270
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.29 E-value=0.41 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
....+++.||.||||||++-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456899999999999999743
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.29 E-value=0.55 Score=43.31 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.6
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.+++.||.||||||++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999744
No 272
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.10 E-value=0.83 Score=44.93 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~--~~~~~li~ 107 (564)
.+..+.++||+||||||.+ +..++ .+|++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999995 22222 45677665
No 273
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.06 E-value=0.4 Score=45.91 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.||+|+|||+.+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3578999999999999986
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.06 E-value=0.39 Score=45.89 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=18.1
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
+.++.++++|+.||||||.+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45889999999999999996
No 275
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.00 E-value=0.39 Score=44.36 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.1
Q ss_pred eEEEEccCCccHHHHHH
Q 008489 79 VILHVGPTNSGKTHQAL 95 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~ 95 (564)
.+++.|+.||||||++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999973
No 276
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.93 E-value=0.42 Score=42.03 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=14.8
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999997
No 277
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.83 E-value=0.89 Score=42.20 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=24.5
Q ss_pred cCCceEEEEccCCccHHHHH---HHHHHcCC--CEEEE-ccH
Q 008489 75 KVRKVILHVGPTNSGKTHQA---LSRLESSS--SGIYC-GPL 110 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~---~~~l~~~~--~~li~-~P~ 110 (564)
|++..+++.|+.||||||++ .+.+...+ .++++ .|.
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 35788999999999999996 34444444 33433 554
No 278
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.65 E-value=0.83 Score=46.06 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~ 108 (564)
.++.+++.|++|+|||+.+++.+. .+++++|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999999866553 345788873
No 279
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.62 E-value=0.44 Score=42.85 Aligned_cols=16 Identities=50% Similarity=0.549 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999986
No 280
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.62 E-value=0.46 Score=45.31 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.+.||+||||||.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.54 E-value=0.43 Score=48.21 Aligned_cols=19 Identities=53% Similarity=0.650 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
....+++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999987
No 282
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.52 E-value=0.46 Score=43.41 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
..+++.||+|+|||+.+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999986
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.51 E-value=0.46 Score=42.80 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.5
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+.+.||.||||||.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999985
No 284
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.37 E-value=0.45 Score=46.44 Aligned_cols=19 Identities=53% Similarity=0.688 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..+.+++.||+|+|||+.+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 285
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.26 E-value=0.63 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.0
Q ss_pred CceEEEEccCCccHHHHH--HHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA--LSRLE 99 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~--~~~l~ 99 (564)
....+++||+|||||+.+ +..++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999994 44443
No 286
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=84.18 E-value=0.91 Score=44.68 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~--~~~~~li~ 107 (564)
++..+.++||+||||||.+ +..++ .++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4679999999999999995 33333 34666555
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.15 E-value=0.46 Score=43.35 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+.+.|+.||||||.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999986
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.11 E-value=0.49 Score=45.34 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...++++|++||||||.+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 467999999999999986
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.11 E-value=0.61 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.1
Q ss_pred cCCceEEEEccCCccHHHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l 98 (564)
..+..+++.||+|||||+.+.+.+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999975433
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.91 E-value=0.53 Score=44.56 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHh---C-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFN---D-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~---~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.+.--.++..|-... ++..+. ++|++..+..+.+.+. . ..| .-||++|--.+. +.. ++.|+..
T Consensus 132 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~-~tviivtH~~~~-~~~-~d~v~~l 201 (237)
T 2cbz_A 132 QKQRVSLARAVYSNA--DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTHSMSY-LPQ-VDVIIVM 201 (237)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTT-SEEEEECSCSTT-GGG-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCC-CEEEEEecChHH-HHh-CCEEEEE
Confidence 444455666665543 466664 7899999999888873 2 123 356666655443 333 6776654
No 291
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.91 E-value=0.42 Score=47.28 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=46.5
Q ss_pred eEEEEccCCccHHHHHHHHHHc------CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccccCCCceEEEcc---
Q 008489 79 VILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV--- 149 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l~~------~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~~~~~~i~~T~--- 149 (564)
.+.+.||+|+|||+.+++.+.+ +++++|+..-..+... +++.+|+... .+++..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~d-------------~llv~~~~~~ 93 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDPE-------------RVIHTPVQSL 93 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCGG-------------GEEEEECSBH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCHH-------------HeEEEcCCCH
Confidence 7999999999999998776542 4678888433222221 3455665421 1222222
Q ss_pred -ee-cc--------ccCcccEEEEccccccC
Q 008489 150 -EM-AD--------VVSDYDCAVIDEIQMLG 170 (564)
Q Consensus 150 -e~-~~--------~l~~~~~vViDEaH~~~ 170 (564)
+. +. .-..+++||||=+..+.
T Consensus 94 E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 94 EQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 11 11 11468999999999874
No 292
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.73 E-value=0.54 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+.+.|+.||||||++
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467999999999999986
No 293
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.72 E-value=0.47 Score=42.87 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999997
No 294
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.69 E-value=0.49 Score=44.13 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999997
No 295
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.67 E-value=0.58 Score=43.20 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
++.+++.||+|+|||+.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 34699999999999998743
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.62 E-value=0.52 Score=44.74 Aligned_cols=17 Identities=59% Similarity=0.810 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999986
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.59 E-value=0.51 Score=43.20 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.0
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
..+.+.||.||||||.+
T Consensus 3 ~~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999986
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.56 E-value=1.7 Score=42.81 Aligned_cols=46 Identities=24% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLN 122 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~~P~r~La~q~~~~l~ 122 (564)
.+..+++.|++|+|||+.+++... ++.+++|+.- -.-..++..|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl-E~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL-EMGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES-SSCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC-CCCHHHHHHHHH
Confidence 578999999999999999766543 2345666621 122344444443
No 299
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.55 E-value=0.55 Score=45.57 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHHhCC--CCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~F~~~--~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... ++..+ .++|++..+..+.+.+++- ....-||++|--.+.=..+ +++|+..
T Consensus 148 qkQRv~iAraL~~~P--~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~-~drv~~l 217 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEP--KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY-CDNVFVM 217 (275)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG-CSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 444455666665433 46666 4789998888777666430 1123466665543322222 4555543
No 300
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.45 E-value=0.58 Score=41.24 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.+.||.||||||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999985
No 301
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.40 E-value=0.63 Score=46.14 Aligned_cols=33 Identities=21% Similarity=0.043 Sum_probs=23.1
Q ss_pred ceEEEEccCCccHHHHHHHHH--HcCCCEEEEccH
Q 008489 78 KVILHVGPTNSGKTHQALSRL--ESSSSGIYCGPL 110 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l--~~~~~~li~~P~ 110 (564)
+.+++.|+.||||||..-..+ ..+.++.++.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 578999999999999863222 234466666663
No 302
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.33 E-value=0.41 Score=45.71 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.|++||||||.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578999999999999987
No 303
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.21 E-value=0.52 Score=47.41 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+++.||+|+|||+.+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999996
No 304
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.21 E-value=1.1 Score=44.08 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=19.6
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHc
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLES 100 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~~ 100 (564)
.+..+.+.||+||||||.+ +..++.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999995 444443
No 305
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.15 E-value=0.33 Score=44.61 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+++.|+.||||||++
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999987
No 306
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.02 E-value=1.1 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.9
Q ss_pred eEEEEccCCccHHHHH--HHHHHc
Q 008489 79 VILHVGPTNSGKTHQA--LSRLES 100 (564)
Q Consensus 79 ~viv~apTGsGKT~~~--~~~l~~ 100 (564)
.+.+.||+||||||.+ +..++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999996 444544
No 307
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.93 E-value=0.59 Score=45.70 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||+|+|||+.+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999986
No 308
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.91 E-value=0.6 Score=43.74 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+.+.|+.||||||++
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4788999999999999986
No 309
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=82.88 E-value=0.61 Score=43.69 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 310
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.88 E-value=0.5 Score=46.59 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEecC
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~~ 316 (564)
.++--.+++.|-... ++..+. ++|++..+..+.+.+.+ ..+. -||+.|--++.=. .++.|+..+
T Consensus 195 qrQRvaiARAL~~~p--~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~itH~l~~~~--~aD~i~vl~ 262 (306)
T 3nh6_A 195 EKQRVAIARTILKAP--GIILLDEATSALDTSNERAIQASLAKVCANR-TTIVVAHRLSTVV--NADQILVIK 262 (306)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEECCSHHHHH--TCSEEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEEEcChHHHH--cCCEEEEEE
Confidence 555566777776554 466664 78899888777766654 1144 3444444333211 267766543
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.78 E-value=0.62 Score=43.79 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.|+.||||||++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5788999999999999996
No 312
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=82.60 E-value=1.2 Score=44.99 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE-cc-HHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC-GP-LRLLAW 115 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~--~~~~~li~-~P-~r~La~ 115 (564)
.+..+.++||+||||||.+ +..++ .++++.+. .+ .|..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~ 201 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS 201 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchh
Confidence 4789999999999999995 32222 45677665 33 344443
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.55 E-value=0.62 Score=44.21 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 314
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.51 E-value=0.64 Score=44.26 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.+.--.++..|-... ++..+. ++|++..+..+.+.+++ ..|. -||++|--.+. +.. ++.|+..
T Consensus 150 q~qRv~iAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~g~-tviivtH~~~~-~~~-~d~v~~l 216 (247)
T 2ff7_A 150 QRQRIAIARALVNNP--KILIFDEATSALDYESEHVIMRNMHKICKGR-TVIIIAHRLST-VKN-ADRIIVM 216 (247)
T ss_dssp HHHHHHHHHHHTTCC--SEEEECCCCSCCCHHHHHHHHHHHHHHHTTS-EEEEECSSGGG-GTT-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHcCCC-EEEEEeCCHHH-HHh-CCEEEEE
Confidence 444455666664433 466664 78999988887776654 1243 45555554432 223 6776654
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.50 E-value=0.62 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=19.8
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA--LSRLE 99 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~--~~~l~ 99 (564)
..+..+.|.||+||||||.+ +..++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 35788999999999999996 44444
No 316
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.45 E-value=1.1 Score=45.23 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+++.||+|+|||+.+++.+. .+++++|+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi 108 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 108 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999999999866553 34678887
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.44 E-value=0.63 Score=44.07 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+-+.||.||||||.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 318
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.40 E-value=0.63 Score=42.99 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999986
No 319
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.39 E-value=0.6 Score=45.65 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...+++.||+|+|||+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 357999999999999996
No 320
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.38 E-value=0.66 Score=43.60 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHH-hC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRF-ND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F-~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.+.--.++..|-... ++..+. ++|++..+..+.+.. .. ..+ .-||++|--.+. +.. +++|+..
T Consensus 135 qkqrv~lAral~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~tvi~vtH~~~~-~~~-~d~v~~l 202 (229)
T 2pze_A 135 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTSKMEH-LKK-ADKILIL 202 (229)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTSCHHHHHHHHHHCCCCCTTT-SEEEEECCCHHH-HHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECcccCCCHHHHHHHHHHHHHHhhCC-CEEEEEcCChHH-HHh-CCEEEEE
Confidence 344455666665433 466664 789999888888763 32 123 346666654432 222 6666654
No 321
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.37 E-value=0.62 Score=43.32 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 322
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.29 E-value=0.62 Score=42.40 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+.++||+||||||.+
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 457899999999999985
No 323
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.24 E-value=0.66 Score=44.54 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... ++..+. ++|++..+..+.+.+++ ..+ .-||++|--.+. +.. +++|+..
T Consensus 160 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviivtH~~~~-~~~-~d~i~~l 226 (260)
T 2ghi_A 160 ERQRIAIARCLLKDP--KIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHRLST-ISS-AESIILL 226 (260)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEECSSGGG-STT-CSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHH-HHh-CCEEEEE
Confidence 444556667765543 466664 78999988877766654 124 356666654442 233 7777654
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.24 E-value=1.1 Score=40.05 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 008489 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
..++-+++.|+.|+|||+.++..+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 45888999999999999999876654
No 325
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.23 E-value=0.66 Score=44.72 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHc----CCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEe
Q 008489 248 RHAIYRLKKAIESR----GKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIF 314 (564)
Q Consensus 248 ~~~~~~l~~~L~~~----~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~ 314 (564)
.++--.++..|-.. ...++..+. ++|++..+..+.+.+++ .++..-||++|--++.=..+ +++|+.
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~-~d~v~v 220 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY-ADRIML 220 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH-CSEEEE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh-CCEEEE
Confidence 44445566666551 022566664 78899888887776654 12344566666544332222 455443
No 326
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.23 E-value=0.6 Score=47.32 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
...++++.||+|+|||+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999987
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.11 E-value=0.65 Score=45.43 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.|.||+||||||.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999996
No 328
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.08 E-value=0.79 Score=42.08 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.2
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l 98 (564)
.+++.|+.|||||+.+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999986654
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.04 E-value=0.68 Score=44.35 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEe
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIF 314 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~ 314 (564)
.++--.++..|-... ++..+. ++|++..+..+.+.+++ ..| .-||++|--.+.-..+ +++|+.
T Consensus 158 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g-~tvi~vtHd~~~~~~~-~d~v~~ 225 (257)
T 1g6h_A 158 QMKLVEIGRALMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFLIIEHRLDIVLNY-IDHLYV 225 (257)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTT-CEEEEECSCCSTTGGG-CSEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCHHHHHHh-CCEEEE
Confidence 444455666665443 477764 88999999888777654 123 3466666543322222 455554
No 330
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.93 E-value=0.69 Score=44.47 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEecccc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAI 301 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~ 301 (564)
.++--.++..|-... .+..+. ++|++..+..+.+.+++ ..| .-||++|--.
T Consensus 158 q~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g-~tvi~vtHd~ 213 (262)
T 1b0u_A 158 QQQRVSIARALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEM 213 (262)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEECSCH
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCH
Confidence 344445666665443 467664 88999988887776654 123 3466666543
No 331
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.92 E-value=0.83 Score=44.52 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.6
Q ss_pred CCceEEEEccCCccHHHHHHHHH---H-cCC-CEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL---E-SSS-SGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l---~-~~~-~~li~ 107 (564)
.|..+++.||+|+|||+.+.+.. . ..| +++|+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999964322 2 324 67666
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.85 E-value=0.71 Score=43.74 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 333
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.75 E-value=0.59 Score=46.62 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.8
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
.++++.||+|+||||.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999986
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.60 E-value=0.63 Score=42.49 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li~~P~r~La~q~~~ 119 (564)
.+..+.++|+.||||||++-..-..-| +.+...=.++.+++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRIGHEVLE 52 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHHHHHHHH
Confidence 345788999999999999732221113 333444445444443
No 335
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.50 E-value=0.75 Score=43.50 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
+++..+++.|+.||||||++
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56889999999999999996
No 336
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.47 E-value=0.67 Score=45.58 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.||||+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999986
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.34 E-value=0.6 Score=41.77 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+.++|++||||||.+
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999996
No 338
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=81.23 E-value=1.9 Score=39.69 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=23.3
Q ss_pred CceEEEEccCCccHHHHH--H-HHHHcCCCEEEE-ccH
Q 008489 77 RKVILHVGPTNSGKTHQA--L-SRLESSSSGIYC-GPL 110 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~--~-~~l~~~~~~li~-~P~ 110 (564)
++-+.+.|+-||||||++ + ..|.++..++.+ .|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCC
Confidence 467889999999999996 2 344333455544 564
No 339
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.15 E-value=0.77 Score=43.77 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... .+..+. ++|++..+..+.+.+++ .....-||++|--.+.-..+-+++|+..
T Consensus 148 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 148 EKKRNEILQLLVLEP--TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 455556677776543 466664 78999988887776654 1123456666654332222213666643
No 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.97 E-value=0.78 Score=43.92 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=80.89 E-value=0.62 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.9
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 008489 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 68 ~~p~~~~~~~~~viv~apTGsGKT~~~ 94 (564)
++..+ ..|..+.+.||.||||||.+
T Consensus 15 ~l~~i--~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAI--DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHH--HHCSEEEEECCTTSSTTHHH
T ss_pred HHHhc--cCCCEEEEECCCCCCHHHHH
Confidence 44444 34889999999999999985
No 342
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.87 E-value=0.79 Score=44.19 Aligned_cols=66 Identities=6% Similarity=-0.057 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhCC-CCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFNDA-SSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~~-~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.+.--.++..|-... .+..+. ++|++..+..+.+.+++- ....-||++|--.+.--.+-+++|+..
T Consensus 169 q~QRv~iAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 169 EKKRNDILQMAVLEP--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 444555667765543 477764 899999999988887661 123457777764433222224666543
No 343
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.84 E-value=0.8 Score=44.08 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... .+..+. ++|++..+..+.+.+++ ..| .-||++|--.+.-..+ ++.|+..
T Consensus 164 qkQRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g-~tvi~vtHd~~~~~~~-~d~v~~l 232 (263)
T 2olj_A 164 QAQRVAIARALAMEP--KIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTHEMGFAREV-GDRVLFM 232 (263)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHh-CCEEEEE
Confidence 344445556664432 466664 78999988887777654 123 4566666543322122 4555543
No 344
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.79 E-value=0.76 Score=44.34 Aligned_cols=17 Identities=59% Similarity=0.810 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999986
No 345
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=80.76 E-value=4.7 Score=45.01 Aligned_cols=79 Identities=10% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCeEEEc-cHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccc-cccccccC-ccEEE
Q 008489 240 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-IGMGLNLN-ISRII 313 (564)
Q Consensus 240 g~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~-~~~Gldip-v~~VI 313 (564)
..+++.. ++.-+.+.++.+.+.. +..+..+||+++..+|..+.+.+.+ |..+|+|+|.. +...+++. ++.||
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhhhhhccCCceEE
Confidence 3455554 7777777777776542 3479999999999999999999998 88999999984 34456774 89999
Q ss_pred ecCcccc
Q 008489 314 FSTMKKF 320 (564)
Q Consensus 314 ~~~~~k~ 320 (564)
......|
T Consensus 496 IDEaHr~ 502 (780)
T 1gm5_A 496 IDEQHRF 502 (780)
T ss_dssp EESCCCC
T ss_pred ecccchh
Confidence 7776554
No 346
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.69 E-value=0.81 Score=44.23 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHHhCC--CCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~F~~~--~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.++..|-... .+..+ .++|++..+..+.+.+++- ....-||++|--.+. +.. ++.|+..
T Consensus 161 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~~-~d~v~~l 229 (271)
T 2ixe_A 161 QRQAVALARALIRKP--RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AER-AHHILFL 229 (271)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HTT-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHh-CCEEEEE
Confidence 344445566664432 46666 4789999998888877651 113346666654432 223 6776654
No 347
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.65 E-value=1.1 Score=41.16 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=20.0
Q ss_pred CCceEEEEccCCccHHHH--HHHHHHcC
Q 008489 76 VRKVILHVGPTNSGKTHQ--ALSRLESS 101 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~--~~~~l~~~ 101 (564)
.....++.||+|||||+. |+.+++-+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356889999999999999 45555543
No 348
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.60 E-value=1.6 Score=43.31 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCceEEEEccCCccHHHHHH--H-HHH-cCCCEEEE--ccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL--S-RLE-SSSSGIYC--GPLRLLA 114 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~--~-~l~-~~~~~li~--~P~r~La 114 (564)
.++.+.++|++|+||||.+. . .+. .+++++++ =+.+..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence 47889999999999999952 2 222 45677666 3444444
No 349
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.36 E-value=1.5 Score=44.64 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.5
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.+.+++.||+|+|||+.+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999998743
No 350
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.31 E-value=1.2 Score=46.20 Aligned_cols=18 Identities=44% Similarity=0.505 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+-+++.||+|+|||+.|
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 578999999999999887
No 351
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.29 E-value=0.86 Score=43.45 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999985
No 352
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.26 E-value=0.84 Score=43.61 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 353
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.25 E-value=0.85 Score=43.91 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEeccccccccccCccEEEec
Q 008489 249 HAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
+.--.++..|-... .+..+. ++|++..+..+.+.+++ ..| .-||++|--.+.-..+ +++|+..
T Consensus 144 ~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g-~tii~vtHd~~~~~~~-~d~v~~l 211 (266)
T 2yz2_A 144 KRRVAIASVIVHEP--DILILDEPLVGLDREGKTDLLRIVEKWKTLG-KTVILISHDIETVINH-VDRVVVL 211 (266)
T ss_dssp HHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTT-CEEEEECSCCTTTGGG-CSEEEEE
T ss_pred HHHHHHHHHHHcCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHh-CCEEEEE
Confidence 34445556664432 466664 78999998887777654 123 3466666543321111 4555543
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.24 E-value=0.79 Score=44.70 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=16.5
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
..+++.|++||||||++-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5689999999999999743
No 355
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=80.11 E-value=0.86 Score=44.24 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999985
No 356
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.81 E-value=1 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.+..+++.||+|+|||+.+.+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999999877654
No 357
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.80 E-value=1.1 Score=39.86 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+.+.|+.||||||.+
T Consensus 5 ~~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM 21 (169)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999986
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.67 E-value=0.91 Score=42.81 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
....+.+.||+||||||.+-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35689999999999999973
No 359
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.64 E-value=0.69 Score=45.87 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+.++++.||+|+|||+.+
T Consensus 45 ~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HTCCEEEESCCCHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHH
Confidence 3678999999999999986
No 360
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.64 E-value=1.5 Score=43.80 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=24.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+++.|++|+|||+.+++... .+..++|+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999765443 34566666
No 361
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.50 E-value=0.41 Score=45.83 Aligned_cols=18 Identities=50% Similarity=0.649 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999987
No 362
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.47 E-value=0.84 Score=47.68 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+++.||+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999987
No 363
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.40 E-value=0.91 Score=43.89 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34999999999999986
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.36 E-value=0.97 Score=41.11 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=15.0
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
.+.+.|+.||||||.+
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999997
No 365
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.23 E-value=0.76 Score=47.33 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+-+++.||+|+|||+.|
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 577999999999999876
No 366
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.20 E-value=0.9 Score=45.97 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.5
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...++++||||||||+.+
T Consensus 23 ~g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLF 40 (365)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 347889999999999995
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=79.08 E-value=0.9 Score=41.88 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
++..+.+.|++|||||+.+-
T Consensus 2 ~~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34579999999999999973
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.04 E-value=1.2 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.2
Q ss_pred CCceEEEEccCCccHHHH--HHHH
Q 008489 76 VRKVILHVGPTNSGKTHQ--ALSR 97 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~--~~~~ 97 (564)
.....+++||||+|||+. |+.+
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999 4554
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=78.89 E-value=0.85 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=15.1
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
+++..+++.|+.||||||++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp CCCCEEEEECCC---CHHHH
T ss_pred cCCeEEEEECCCCCCHHHHH
Confidence 46889999999999999996
No 370
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.31 E-value=1.9 Score=45.20 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l~--~~~~~li~ 107 (564)
.+..+.++||+||||||.+ +..++ .+|++++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4779999999999999985 32232 35677665
No 371
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.27 E-value=1.1 Score=41.74 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+++.|+.||||||++
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4789999999999999996
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.12 E-value=1.1 Score=42.60 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...+.|.|+.||||||++
T Consensus 22 ~~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC 39 (252)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 357899999999999986
No 373
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.05 E-value=1.1 Score=42.88 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
+...+++.|+.||||||++
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3578999999999999997
No 374
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.02 E-value=1.5 Score=45.29 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+-+++.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999987
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=78.02 E-value=1.1 Score=43.83 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHH-hC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRF-ND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F-~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.+.--.++..|-... .+..+. ++|++..+..+.+.+ .. ..| .-||++|--.+. +.. ++.|+..
T Consensus 164 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~ll~~~~~~-~tviivtHd~~~-~~~-~d~i~~l 231 (290)
T 2bbs_A 164 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTSKMEH-LKK-ADKILIL 231 (290)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHCCCCCTTT-SEEEEECCCHHH-HHH-SSEEEEE
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCcccCCHHHHHHHHHHHHHHhhCC-CEEEEEecCHHH-HHc-CCEEEEE
Confidence 444455666665443 466664 789999998888753 22 123 345555554332 222 6666653
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=78.00 E-value=1.1 Score=43.60 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...+.+.|+.||||||++
T Consensus 75 ~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 457999999999999997
No 377
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.87 E-value=1.5 Score=45.34 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+-+++.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 577999999999999987
No 378
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.82 E-value=2 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.0
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
.+..+.+.||+|||||+.+.+.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999987554
No 379
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.70 E-value=1 Score=47.02 Aligned_cols=18 Identities=33% Similarity=0.494 Sum_probs=16.1
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
..+++.||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999999973
No 380
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.69 E-value=1.5 Score=44.89 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+-+++.||+|+|||+.|
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 567999999999999887
No 381
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.65 E-value=1 Score=47.63 Aligned_cols=41 Identities=12% Similarity=-0.032 Sum_probs=28.0
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHH
Q 008489 490 AALRELES-IHKVLDLYVWLSFRLEESFPDRELAASQKAICS 530 (564)
Q Consensus 490 ~~l~~le~-~~~~~~~y~wl~~r~~~~f~~~~~~~~~~~~~~ 530 (564)
+-++.+|. .|..-....-++...|..|.+.++...+-.-+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
T 3nbx_X 447 EIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQ 488 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCeeeecHHHHHHHHHHHH
Confidence 44455543 245566667788888999999999876655443
No 382
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=77.39 E-value=4.5 Score=39.42 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=45.6
Q ss_pred CCceEEEEccCCccHHHHH--HHHH-H-cCCCEEEE--ccHHHHHHHHHHHH-HhcCCeeEEEeCccccccCCCceEEEc
Q 008489 76 VRKVILHVGPTNSGKTHQA--LSRL-E-SSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVT 148 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~--~~~l-~-~~~~~li~--~P~r~La~q~~~~l-~~~g~~~~~~~G~~~~~~~~~~~i~~T 148 (564)
.++.+.++|++|+||||.+ +..+ . .+++++++ -+.+..+......+ ...|+.+-. +.... +..-+ .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~--~~~~~---~p~~l--~ 169 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VMDGE---SPESI--R 169 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CCTTC---CHHHH--H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE--cCCCC---CHHHH--H
Confidence 4778889999999999985 2222 2 35677666 34454444322222 234554322 11100 00000 0
Q ss_pred ceeccc--cCcccEEEEcccccc
Q 008489 149 VEMADV--VSDYDCAVIDEIQML 169 (564)
Q Consensus 149 ~e~~~~--l~~~~~vViDEaH~~ 169 (564)
...+.. ..++++|||||.=..
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCS
T ss_pred HHHHHHHHhCCCCEEEEeCCCCc
Confidence 011122 268999999998443
No 383
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.39 E-value=3.3 Score=42.62 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCceEEEEccCCccHHHHHH---HHHH-cCCCEEEE--ccHHHHHHHHHHHHH-hcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~---~~l~-~~~~~li~--~P~r~La~q~~~~l~-~~g~~~ 128 (564)
.++.++++|++|+||||.+. ..+. .+++++++ =+.+..+.+..+.+. ..|+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 36788899999999999952 2233 34566655 355666654433333 345554
No 384
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.04 E-value=1.2 Score=41.91 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+++.|+.||||||++
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 567899999999999986
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.03 E-value=1.5 Score=39.20 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
-+.++++|+.||||||..
T Consensus 6 ~~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred ceEEEEEeCCCCCHHHHH
Confidence 357899999999999985
No 386
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.02 E-value=2.3 Score=41.53 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=45.5
Q ss_pred CceEEEEccCCccHHHHHHH---HH-HcCCCEEEE--ccHHHHHHHHHHHHH-hcCCeeEEEeCccccccCCCceEEEcc
Q 008489 77 RKVILHVGPTNSGKTHQALS---RL-ESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~---~l-~~~~~~li~--~P~r~La~q~~~~l~-~~g~~~~~~~G~~~~~~~~~~~i~~T~ 149 (564)
++.++++|++|+||||.+.. .+ ..+++++++ -|.|..+.++.+.+. ..|+++. .+.... +...+ ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~--~~~~~~---~p~~~--~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY--GEPGEK---DVVGI--AK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE--CCTTCC---CHHHH--HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE--ecCCCC---CHHHH--HH
Confidence 67888999999999998522 22 235677666 455555544433333 3455432 221100 00000 00
Q ss_pred eecccc--CcccEEEEcccccc
Q 008489 150 EMADVV--SDYDCAVIDEIQML 169 (564)
Q Consensus 150 e~~~~l--~~~~~vViDEaH~~ 169 (564)
+.+..+ .++++||||=+-..
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSC
T ss_pred HHHHHHHhCCCCEEEEeCCCCc
Confidence 112222 67899999986543
No 387
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=77.02 E-value=1.4 Score=42.14 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCee
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~----~~~~li~~P~r~La~q~~~~l~~~g~~~ 128 (564)
.+..+++.|.+|+|||+.+++.+.+ +.+++|+. +-+-..++.++++.+|+..
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~-~~e~~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS-ISYPLQLIIRILSRFGVDV 75 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE-CSSCHHHHHHHHHHTTCCH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE-EeCCHHHHHHHHHHcCCCH
Confidence 4788999989999999887777653 34666662 1222345556666666654
No 388
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.81 E-value=1.1 Score=47.87 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999986
No 389
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.44 E-value=2.3 Score=41.93 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.6
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEE
Q 008489 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~~~~~~li~ 107 (564)
++.++|.||.|+|||+.+-+...+.+ .+++
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 47899999999999999866655544 6665
No 390
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.40 E-value=0.66 Score=46.18 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
...+++.||+|+|||+.+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999986
No 391
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=76.38 E-value=1.4 Score=41.38 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..+.+.|+.||||||++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 34678999999999999986
No 392
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.37 E-value=1.2 Score=42.68 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccccCcc-EEEe
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS-RIIF 314 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gldipv~-~VI~ 314 (564)
.+.--.++..|-... .+..+. ++|++..+..+.+.+++-.. -||++|--.+.-..+ ++ .|+.
T Consensus 133 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~-~d~~i~~ 198 (263)
T 2pjz_A 133 QSVLVRTSLALASQP--EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLY-KEYKAYF 198 (263)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGC-TTSEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHh-cCceEEE
Confidence 344445666665443 466664 78999999988888876212 566666544332222 45 5543
No 393
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.23 E-value=1.3 Score=46.54 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
....++++.||+|+|||+.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999986
No 394
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.23 E-value=1.3 Score=41.96 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC--CCCCeeEEEecccc
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND--ASSEFDVLVASDAI 301 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~--~~g~~~VlVaT~~~ 301 (564)
.++--.++..|-... .+..+. ++|++..+..+.+.+++ .+...-||++|--.
T Consensus 131 qkqRv~lAral~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 131 ERQRVALARALVIQP--RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp HHHHHHHHHHHTTCC--SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 334445566664432 455553 78999988887776654 11123466666543
No 395
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.21 E-value=3.9 Score=42.88 Aligned_cols=57 Identities=9% Similarity=-0.036 Sum_probs=44.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc-CCeeEEEe
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLIT 132 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~-g~~~~~~~ 132 (564)
.+....+.|-||||||+.+...+.+ .+..++++|....|.++++.++.+ +..|.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp 71 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEe
Confidence 3667899999999999997666655 456799999999999999999975 33444433
No 396
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=76.08 E-value=1.2 Score=46.11 Aligned_cols=18 Identities=56% Similarity=0.726 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+++++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 567999999999999986
No 397
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.06 E-value=4.6 Score=41.80 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=24.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~ 107 (564)
.+..+++.|++|+|||+.+++... . +.+++|+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999765442 2 3467776
No 398
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=76.02 E-value=2.9 Score=43.95 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIY 106 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~~~~li 106 (564)
..+.+++.||+|+|||+.+-......+..++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 3567999999999999997433333333333
No 399
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.91 E-value=1.3 Score=44.58 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 29 ~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999985
No 400
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.79 E-value=1.3 Score=44.87 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+++.||+||||||.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4779999999999999986
No 401
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=75.60 E-value=1.4 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.+..+.++|++|+|||+.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999875
No 402
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=75.16 E-value=13 Score=36.58 Aligned_cols=103 Identities=11% Similarity=-0.096 Sum_probs=57.9
Q ss_pred CeEEEc-cHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccccccc-----c-CccEEE
Q 008489 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN-----L-NISRII 313 (564)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~~Gld-----i-pv~~VI 313 (564)
.+++|. ..+...-+...+...+. ...-+.|..... +.+ . .+ ....|.+.|...+-|+| + +.+.||
T Consensus 127 kVLIfsq~t~~LDilE~~l~~~~~-~y~RlDG~~~~~-~~k---~-~~--~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 127 ETAIVCRPGRTMDLLEALLLGNKV-HIKRYDGHSIKS-AAA---A-ND--FSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp EEEEEECSTHHHHHHHHHHTTSSC-EEEESSSCCC------------C--CSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred EEEEEECChhHHHHHHHHHhcCCC-ceEeCCCCchhh-hhh---c-cc--CCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 344444 46666667677765554 888999985443 211 1 12 45566666777777776 5 599999
Q ss_pred ecCccccCCccccccCHhhHHhhhccCCCCCCC-CCcEEEEEecCCC
Q 008489 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSED 359 (564)
Q Consensus 314 ~~~~~k~~~~~~~p~s~~~~~Qr~GRaGR~g~~-~~~G~~~~l~~~~ 359 (564)
.+|.. |-+....+|.+-|+.|.|.+ ...-.||++....
T Consensus 199 ~~Dsd--------wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 199 CLDTT--------VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ECSTT--------CCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred EECCC--------CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 98873 22333457877777776421 1225678875543
No 403
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=75.13 E-value=5.4 Score=40.54 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCeEEEc-cHHHHHHHHHHHHHcC--CCeEEEEcCCCCHHHHHHHHHHHhCCCCCeeEEEeccccc----ccccc-Ccc
Q 008489 239 TGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG----MGLNL-NIS 310 (564)
Q Consensus 239 ~g~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~VlVaT~~~~----~Gldi-pv~ 310 (564)
.+.++|.. ++.-+.++++.+++.+ ...+..+||+.+..+|..+.+.+.. +..+|+|+|.-.- .-++. .++
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHHHHHHHhcccccc
Confidence 34455555 8888999999888752 3479999999999888888888887 7789999998322 12455 488
Q ss_pred EEEecCc
Q 008489 311 RIIFSTM 317 (564)
Q Consensus 311 ~VI~~~~ 317 (564)
+||+...
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8887665
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=75.00 E-value=1.5 Score=44.20 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 40 ~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999985
No 405
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=74.49 E-value=3.3 Score=37.75 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.7
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEEcc
Q 008489 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGP 109 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~----~~~l~~~~~~li~~P 109 (564)
.+..+++.+++|.|||++| +.++-.+.++++++=
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4567999999999999997 344555668888843
No 406
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=74.47 E-value=1.5 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 28 ~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5889999999999999985
No 407
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=74.47 E-value=3.3 Score=48.76 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=37.6
Q ss_pred cCCceEEEEccCCccHHHHH----HHHHHcC------------CCEEEEccHHHHHHHHHHHHHh
Q 008489 75 KVRKVILHVGPTNSGKTHQA----LSRLESS------------SSGIYCGPLRLLAWEVAKRLNK 123 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~----~~~l~~~------------~~~li~~P~r~La~q~~~~l~~ 123 (564)
+.+.+ +|.|.-|||||++. +..|+.. .+++++.=|+.+|.++.+|+.+
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 44554 99999999999984 4445442 2579999999999999999874
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.47 E-value=2.6 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCceEEEEccCCccHHHHHHHH----HHc-CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSR----LES-SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~----l~~-~~~~li~ 107 (564)
.+..+.+.||+||||||.+... +.. +...+++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999997553 333 3445665
No 409
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=74.40 E-value=2.7 Score=38.29 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=21.7
Q ss_pred EEEEccCCccHHHHH---HHHHHcCC-CEEEE-ccHH
Q 008489 80 ILHVGPTNSGKTHQA---LSRLESSS-SGIYC-GPLR 111 (564)
Q Consensus 80 viv~apTGsGKT~~~---~~~l~~~~-~~li~-~P~r 111 (564)
+++.|+-||||||++ ...|.+.| .++++ -|..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~ 39 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 678899999999996 34455554 34444 5643
No 410
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=74.26 E-value=1.4 Score=42.50 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.4
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++.++||+|+||||..
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999985
No 411
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.20 E-value=1.9 Score=44.88 Aligned_cols=19 Identities=47% Similarity=0.506 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
..+-+++.||+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 3678999999999999886
No 412
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=74.16 E-value=1.5 Score=43.72 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.....+++||+|||||+..
T Consensus 22 ~~~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLL 40 (339)
T ss_dssp CSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568899999999999994
No 413
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=74.12 E-value=1.6 Score=44.03 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5889999999999999985
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.04 E-value=1.5 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
....++++|+.||||||.+-.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 357899999999999998744
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.92 E-value=1.5 Score=43.69 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=14.3
Q ss_pred EEEEccCCccHHHHH
Q 008489 80 ILHVGPTNSGKTHQA 94 (564)
Q Consensus 80 viv~apTGsGKT~~~ 94 (564)
+++.||+|+|||+.+
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999996
No 416
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.87 E-value=1.6 Score=44.02 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999985
No 417
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.82 E-value=1.5 Score=43.63 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||+|+|||+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3999999999999996
No 418
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=73.71 E-value=2.8 Score=41.19 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.++-+++.|+.|+|||+.++..+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999977553
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.62 E-value=0.9 Score=44.38 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.1
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+..+.|.||.||||||.+
T Consensus 5 ~~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK 22 (290)
T ss_dssp SCEEEEESCC---CCTHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 557899999999999986
No 420
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.58 E-value=1.6 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||+||||||..
T Consensus 46 ~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5899999999999999985
No 421
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.52 E-value=3.9 Score=42.23 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=31.7
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc--CCCEEEE--ccHHHHHHHHHHHHH-hcCCee
Q 008489 77 RKVILHVGPTNSGKTHQAL---SRLES--SSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~---~~l~~--~~~~li~--~P~r~La~q~~~~l~-~~g~~~ 128 (564)
.++++++|++|+||||.+. .++.. +.+++++ =|.|..+.+....+. ..|+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 4678889999999999963 23333 4566665 465655555443333 335443
No 422
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.51 E-value=1.6 Score=43.41 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
.++++.||+|+|||+.+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999986
No 423
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=73.28 E-value=1.4 Score=44.11 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 25 ~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp TTCEEEEECCCTHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 5889999999999999985
No 424
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=73.08 E-value=1.8 Score=40.42 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..+..+++.|+.||||||++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999996
No 425
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=72.91 E-value=2.1 Score=41.83 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
.++++.||+|+|||+.+
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35999999999999986
No 426
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.90 E-value=4.8 Score=42.42 Aligned_cols=45 Identities=11% Similarity=-0.110 Sum_probs=30.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEEccHHHHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYCGPLRLLAWEVAKRL 121 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~~P~r~La~q~~~~l 121 (564)
.+..+++.|++|+|||+.+++.+. + +.+++|+.- -.-..|+..|+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 578999999999999999876553 2 346777621 11134555554
No 427
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=72.83 E-value=1.8 Score=43.93 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 5889999999999999984
No 428
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.76 E-value=1.7 Score=45.65 Aligned_cols=18 Identities=56% Similarity=0.665 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
.+.+++.||+|+|||+.+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999986
No 429
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.72 E-value=1.7 Score=46.91 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEecC
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~~ 316 (564)
.++--.+++.|-... ++..+. ++++++.+..+.+.++. ..+..-|+|+-+. +. +. .+|.|+..+
T Consensus 482 q~Qrv~lAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l-~~-~~-~~d~i~~l~ 549 (578)
T 4a82_A 482 QKQRLSIARIFLNNP--PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL-ST-IT-HADKIVVIE 549 (578)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSG-GG-TT-TCSEEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCH-HH-HH-cCCEEEEEE
Confidence 555566777776554 466664 78999888777666543 1254444444444 32 22 277777543
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=72.46 E-value=1.8 Score=43.81 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5889999999999999984
No 431
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=72.37 E-value=1.8 Score=43.60 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
+|..+.+.||.||||||..
T Consensus 53 ~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5899999999999999985
No 432
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.21 E-value=2.3 Score=44.29 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~-~~~~li~ 107 (564)
.+..+++.|++|+|||+.+++... . +.+++|+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 578999999999999999765432 2 3367776
No 433
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.77 E-value=3.9 Score=38.15 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~ 95 (564)
+-++++.++.|+|||+.++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3469999999999999964
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=71.28 E-value=1.8 Score=45.20 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||+||||||..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SCCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999985
No 435
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.16 E-value=5.2 Score=42.14 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=30.4
Q ss_pred CceEEEEccCCccHHHHHHH---HHHc-CCCEEEE--ccHHHHHHHHHHHHH-hcCCee
Q 008489 77 RKVILHVGPTNSGKTHQALS---RLES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~---~l~~-~~~~li~--~P~r~La~q~~~~l~-~~g~~~ 128 (564)
.++++++|++|+||||.+.. .+.. +.+++++ =|.|..+.++.+... ..++++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 45789999999999999632 2333 4566555 244555544433332 345554
No 436
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=71.12 E-value=23 Score=31.46 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=50.1
Q ss_pred CccHHHHHHHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCcccccc----------CCCceEEEcceecc
Q 008489 87 NSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV----------DGAKHRAVTVEMAD 153 (564)
Q Consensus 87 GsGKT~~~~~~l~~---~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~~----------~~~~~i~~T~e~~~ 153 (564)
.+.|-......+.+ .+++||.++++.-+..+++.+...|+.+..++|+..... ....++++|.-...
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 46786665555543 457899999999999999999999999999999654321 24567777753222
Q ss_pred --ccCcccEEEE
Q 008489 154 --VVSDYDCAVI 163 (564)
Q Consensus 154 --~l~~~~~vVi 163 (564)
.+..+++||.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 2456777765
No 437
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=70.81 E-value=2 Score=41.87 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||+|+|||+.+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 4999999999999986
No 438
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=70.72 E-value=1.9 Score=46.44 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEecC
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~~ 316 (564)
.++--.+++.|-... ++..+. ++++++.+..+.+.+++ ..|..-|+|+-+. +. +. .+++|+..+
T Consensus 485 q~qrl~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-~~-~~-~~d~i~~l~ 552 (582)
T 3b60_A 485 QRQRIAIARALLRDS--PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL-ST-IE-QADEIVVVE 552 (582)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCG-GG-TT-TCSEEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccH-HH-HH-hCCEEEEEE
Confidence 455556777776543 477764 78999988877776654 1255445555554 32 22 377777543
No 439
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=70.54 E-value=2 Score=46.44 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEecC
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~~ 316 (564)
+++--.+++.|-... ++..+. ++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .+|.|+..+
T Consensus 484 qrQrv~lARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~--~~-~~d~i~vl~ 551 (587)
T 3qf4_A 484 QKQRLSIARALVKKP--KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT--AL-LADKILVLH 551 (587)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH--HT-TSSEEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH--HH-hCCEEEEEE
Confidence 555566777776543 467664 78898888877776654 225555566555432 22 377776543
No 440
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.42 E-value=2 Score=46.38 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.+++.|-... ++..+. ++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .+|.|+..
T Consensus 485 q~qr~~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~--~~-~~d~i~~l 551 (582)
T 3b5x_A 485 QRQRVAIARALLRDA--PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST--IE-QADEILVV 551 (582)
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH--HH-hCCEEEEE
Confidence 444456677765543 466664 78899888887777654 224444555554422 12 26776654
No 441
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=70.42 E-value=1.5 Score=44.15 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.|..+.+.||.||||||..
T Consensus 30 ~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999985
No 442
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.25 E-value=3.6 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~----~~~~~li~ 107 (564)
.+..+++.|++|+|||+.+++... ++.+++|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 578999999999999999865543 33355555
No 443
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.21 E-value=2 Score=47.89 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
....++++.||+|+|||+.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred CCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999996
No 444
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=70.12 E-value=2 Score=43.35 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
++.+.++||+||||||.+
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 678999999999999986
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=69.94 E-value=2 Score=46.62 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
.++.+++.||+|+|||+.+
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 5789999999999999997
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=69.60 E-value=2.9 Score=35.73 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=16.8
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
..+++.|++|+|||+.+-..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999865444
No 447
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=69.28 E-value=13 Score=32.53 Aligned_cols=83 Identities=16% Similarity=0.001 Sum_probs=55.7
Q ss_pred EEEccCCccHHHHHHHHHHc--CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc----------cCCCceEEEc
Q 008489 81 LHVGPTNSGKTHQALSRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVT 148 (564)
Q Consensus 81 iv~apTGsGKT~~~~~~l~~--~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T 148 (564)
++.-+....|-......+.. .+++||.++++.-+..+++.+.+.|..+..++|+.... .....++++|
T Consensus 12 ~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp EEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 34444444465544443332 35789999999999999999999999999999974321 1245677777
Q ss_pred ceeccc--cCcccEEEE
Q 008489 149 VEMADV--VSDYDCAVI 163 (564)
Q Consensus 149 ~e~~~~--l~~~~~vVi 163 (564)
.-.... +..+++||.
T Consensus 92 ~~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 NVCARGIDVKQVTIVVN 108 (175)
T ss_dssp CSCCTTTCCTTEEEEEE
T ss_pred cchhcCCCcccCCEEEE
Confidence 533332 466778775
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=69.15 E-value=2.4 Score=38.74 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~~~ 96 (564)
|++..+.+.|+.|||||+++-.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~ 25 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKK 25 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHH
Confidence 4567899999999999999743
No 449
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.99 E-value=1.8 Score=46.83 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEecC
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~~ 316 (564)
.++--.+++.|-... ++..+. ++++++.+..+.+.+.+ ..|..-|+|+-+.-. +. .+|.|+..+
T Consensus 496 q~Qrv~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~--~~-~~d~i~~l~ 563 (598)
T 3qf4_B 496 QRQLLAITRAFLANP--KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT--IK-NADLIIVLR 563 (598)
T ss_dssp HHHHHHHHHHHHTCC--SEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH--HH-HCSEEEEEC
T ss_pred HHHHHHHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH--HH-cCCEEEEEE
Confidence 455556777776543 466664 78888888777666543 125555555555432 11 277777554
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=68.63 E-value=2.9 Score=35.72 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=16.7
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
-.+++.|++|+|||+.+-..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999864433
No 451
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=68.60 E-value=21 Score=30.75 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=53.3
Q ss_pred cHHHHHHHHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc----------cCCCceEEEcceeccc--
Q 008489 89 GKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV-- 154 (564)
Q Consensus 89 GKT~~~~~~l~--~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~-- 154 (564)
.|.......+. ..+++||.++++.-+..+++.+.+.|..+..++|+.... .....++++|.-....
T Consensus 16 ~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 16 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 37665544443 346899999999999999999999999999999974321 1245677777533322
Q ss_pred cCcccEEEEc
Q 008489 155 VSDYDCAVID 164 (564)
Q Consensus 155 l~~~~~vViD 164 (564)
+..+++||.-
T Consensus 96 ~~~~~~Vi~~ 105 (165)
T 1fuk_A 96 VQQVSLVINY 105 (165)
T ss_dssp CCSCSEEEES
T ss_pred cccCCEEEEe
Confidence 4567777763
No 452
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.51 E-value=2.6 Score=44.57 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~ 94 (564)
+.+++|.|+||||||+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 678999999999999985
No 453
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.26 E-value=2.4 Score=44.79 Aligned_cols=17 Identities=59% Similarity=0.810 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 008489 78 KVILHVGPTNSGKTHQA 94 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~ 94 (564)
+.+++.||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44999999999999986
No 454
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.20 E-value=2.7 Score=40.33 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~ 95 (564)
+.+++.||+|+|||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999999874
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=67.72 E-value=3.1 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~ 97 (564)
...+++.|++|+|||+.+-..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 346899999999999976443
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=67.59 E-value=2.1 Score=45.80 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..++++|+.||||||.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp SCEEEEEEESSCHHHHHHH
T ss_pred cceEEEEECCCCChHHHHH
Confidence 5789999999999999985
No 457
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=67.16 E-value=4.8 Score=45.17 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
.++.++++||+|||||+.+-
T Consensus 237 ~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46789999999999999873
No 458
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.10 E-value=3 Score=40.53 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.8
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||+|+|||+.+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999986
No 459
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=66.64 E-value=2.8 Score=37.77 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.3
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.+++.|+.|+|||+.+-.
T Consensus 7 kv~lvG~~g~GKSTLl~~ 24 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSR 24 (199)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 589999999999998643
No 460
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.62 E-value=2.2 Score=42.19 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH--cCCCeEEEE---cCCCCHHHHHHHHHHHhC-CCCCeeEEEecccc
Q 008489 248 RHAIYRLKKAIES--RGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAI 301 (564)
Q Consensus 248 ~~~~~~l~~~L~~--~~~~~v~~l---hg~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~ 301 (564)
.+.-..++..|.. .....+..+ .++|++..+....+.++. ..+ ..||++|--.
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~vi~~tH~~ 282 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-TQFIVITHNK 282 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTT-SEEEEECCCT
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEECCH
Confidence 4555556666643 122256665 478999988887776654 123 3455555433
No 461
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=66.26 E-value=2.1 Score=46.25 Aligned_cols=63 Identities=8% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEc---CCCCHHHHHHHHHHHhC-CCCCeeEEEeccccccccccCccEEEec
Q 008489 248 RHAIYRLKKAIESRGKHLCSIVY---GSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (564)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lh---g~l~~~~R~~~~~~F~~-~~g~~~VlVaT~~~~~Gldipv~~VI~~ 315 (564)
.++--.+++.|-... ++..+. ++++++.+..+.+.+++ ..+..-|+|+-+. +. +. .++.|+..
T Consensus 488 q~qrv~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-~~-~~-~~d~i~~l 554 (595)
T 2yl4_A 488 QKQRIAIARALLKNP--KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRL-ST-IK-NANMVAVL 554 (595)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCH-HH-HH-HSSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCH-HH-HH-cCCEEEEE
Confidence 455556777776543 466664 78999988887777654 1244444444443 32 12 26777654
No 462
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=66.21 E-value=2.8 Score=37.55 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.4
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.++++|+.|+|||+.+-.
T Consensus 31 kv~lvG~~g~GKSTLl~~ 48 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSR 48 (191)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 589999999999998643
No 463
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=65.96 E-value=2.7 Score=46.82 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
...++++.||+|+|||+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 5678999999999999986
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=65.87 E-value=2.9 Score=41.60 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
++..+.+.||+|+||||..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp CSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5788999999999999985
No 465
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=65.78 E-value=3 Score=35.92 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~ 97 (564)
-.+++.|++|+|||+.+-..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 36899999999999886443
No 466
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=65.77 E-value=3.8 Score=35.13 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.6
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
-.+++.|++|+|||+.+-..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999864433
No 467
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=65.69 E-value=3.6 Score=42.39 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.8
Q ss_pred CceEEEEccCCccHHHHH--HHHHH
Q 008489 77 RKVILHVGPTNSGKTHQA--LSRLE 99 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~--~~~l~ 99 (564)
+..+++.||+|||||+.. +..++
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 688999999999999984 44444
No 468
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=65.57 E-value=3.6 Score=35.13 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.-.+++.|++|+|||+.+-.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~ 22 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHH
Confidence 34689999999999988643
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=65.40 E-value=3.8 Score=36.36 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=18.2
Q ss_pred CceEEEEccCCccHHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRLE 99 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l~ 99 (564)
.-.++++|++|+|||+.+-....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999988755443
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=65.36 E-value=4.8 Score=39.57 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLES 100 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~ 100 (564)
.++-+++.|+.|+|||+.++..+..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4788999999999999999876654
No 471
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.99 E-value=4.6 Score=34.64 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.4
Q ss_pred ceEEEEccCCccHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~ 97 (564)
-.+++.|++|+|||+.+-..
T Consensus 4 ~~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999986443
No 472
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=64.89 E-value=3.8 Score=37.46 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~ 97 (564)
+-..++++|++|+|||+.+-..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHH
Confidence 3468999999999999986433
No 473
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=64.86 E-value=23 Score=30.49 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=53.7
Q ss_pred CccHHHHHHHHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc----------cCCCceEEEcceeccc
Q 008489 87 NSGKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV 154 (564)
Q Consensus 87 GsGKT~~~~~~l~--~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~~ 154 (564)
...|-......+. ..+++||.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.-....
T Consensus 19 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 19 EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 3567655444333 356899999999999999999999999999999974321 1245677777533222
Q ss_pred --cCcccEEEE
Q 008489 155 --VSDYDCAVI 163 (564)
Q Consensus 155 --l~~~~~vVi 163 (564)
+..+++||.
T Consensus 99 ld~~~~~~Vi~ 109 (163)
T 2hjv_A 99 IDIENISLVIN 109 (163)
T ss_dssp CCCSCCSEEEE
T ss_pred CchhcCCEEEE
Confidence 456777775
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=64.53 E-value=4.1 Score=35.48 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.0
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
-.++++|++|+|||+.+-..+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999864443
No 475
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=64.52 E-value=17 Score=33.02 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=54.3
Q ss_pred CCccHHHHHHHHH--HcCCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc----------cCCCceEEEcceecc
Q 008489 86 TNSGKTHQALSRL--ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD 153 (564)
Q Consensus 86 TGsGKT~~~~~~l--~~~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~ 153 (564)
+...|.......+ ...+++||.+|++.-+..+++.+.+.|+.+..++|+.... .....++++|.-...
T Consensus 14 ~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93 (212)
T ss_dssp CTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTC
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhc
Confidence 3456766654443 3467899999999999999999999999999999974321 124567777752222
Q ss_pred --ccCcccEEEE
Q 008489 154 --VVSDYDCAVI 163 (564)
Q Consensus 154 --~l~~~~~vVi 163 (564)
.+..+++||.
T Consensus 94 Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 94 GLDIPQVDLVVH 105 (212)
T ss_dssp SSSCCCBSEEEE
T ss_pred CCCCccCcEEEE
Confidence 2466777763
No 476
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=64.50 E-value=4.2 Score=39.77 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=18.1
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..++.+.+.||+|+||||..
T Consensus 163 l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH
Confidence 46889999999999999986
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=64.50 E-value=3.4 Score=36.29 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
+..++++|++|+|||+.+-.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~ 23 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNA 23 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999987643
No 478
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=64.32 E-value=4 Score=34.91 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l 98 (564)
.-.+++.|++|+|||+.+-..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999864433
No 479
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.25 E-value=4.6 Score=36.74 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=17.9
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~l 98 (564)
...+++.|++|+|||+.+-..+
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999875444
No 480
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=63.83 E-value=4.3 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.4
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~~l 98 (564)
.+++.|++|+|||+.+-..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999998865444
No 481
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.39 E-value=3.8 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC
Q 008489 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l~~~ 101 (564)
.++.++++||||+|||..+-..+...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999986666554
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.39 E-value=3.1 Score=42.86 Aligned_cols=19 Identities=37% Similarity=0.351 Sum_probs=16.3
Q ss_pred CCce--EEEEccCCccHHHHH
Q 008489 76 VRKV--ILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~--viv~apTGsGKT~~~ 94 (564)
.|.. +.++||+|+||||.+
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHH
Confidence 4777 899999999999985
No 483
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=63.26 E-value=4 Score=40.41 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQAL 95 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~ 95 (564)
-+-.++..|.||||||+...
T Consensus 77 ~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CeEEEEEECCCCCCCceEec
Confidence 34568899999999999863
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.19 E-value=3.2 Score=44.88 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=15.1
Q ss_pred eEEEEccCCccHHHHH
Q 008489 79 VILHVGPTNSGKTHQA 94 (564)
Q Consensus 79 ~viv~apTGsGKT~~~ 94 (564)
++++.||+|+|||+.+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999876
No 485
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=63.09 E-value=2.5 Score=41.48 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..++.+.+.||+|+||||..
T Consensus 171 ~~G~~~~lvG~sG~GKSTLl 190 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLL 190 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45899999999999999875
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=63.00 E-value=4.2 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~ 97 (564)
+...++++|++|+|||+.+-..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999987443
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=62.87 E-value=4.1 Score=43.40 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.1
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
.+|..+.++||.||||||..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLl 42 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVL 42 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 46899999999999999985
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=62.86 E-value=5.2 Score=34.75 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~~l 98 (564)
+...+++.|++|+|||+.+-..+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35679999999999998864433
No 489
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=62.78 E-value=4 Score=40.98 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
-+-.++..|.||||||+..
T Consensus 104 ~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 104 YNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCEEEEEeCCCCCCccEEe
Confidence 3556899999999999886
No 490
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=62.78 E-value=5 Score=35.45 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~ 97 (564)
...+++.|++|+|||+.+-..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457999999999999886443
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=62.30 E-value=5.2 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~~ 97 (564)
...+++.|++|+|||+.+-..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467999999999999986443
No 492
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=62.27 E-value=18 Score=32.30 Aligned_cols=77 Identities=12% Similarity=0.007 Sum_probs=54.6
Q ss_pred CccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCeeEEEeCccccc----------cCCCceEEEcceecc--
Q 008489 87 NSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD-- 153 (564)
Q Consensus 87 GsGKT~~~~~~l~~-~~~~li~~P~r~La~q~~~~l~~~g~~~~~~~G~~~~~----------~~~~~~i~~T~e~~~-- 153 (564)
...|.......+.+ .+++||.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.-...
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 45676665555544 35789999999999999999998899999999974321 125667787753222
Q ss_pred ccCcccEEEE
Q 008489 154 VVSDYDCAVI 163 (564)
Q Consensus 154 ~l~~~~~vVi 163 (564)
.+..+++||.
T Consensus 119 di~~v~~VI~ 128 (191)
T 2p6n_A 119 DFPAIQHVIN 128 (191)
T ss_dssp CCCCCSEEEE
T ss_pred CcccCCEEEE
Confidence 2466777776
No 493
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=62.19 E-value=3.9 Score=41.05 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=18.0
Q ss_pred cCCceEEEEccCCccHHHHH
Q 008489 75 KVRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 75 ~~~~~viv~apTGsGKT~~~ 94 (564)
..++.+.++||+|+||||.+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLl 232 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLL 232 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCccHHHHH
Confidence 46889999999999999975
No 494
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=62.19 E-value=4.9 Score=34.54 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.3
Q ss_pred ceEEEEccCCccHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSR 97 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~ 97 (564)
-.+++.|++|+|||+.+-..
T Consensus 4 ~~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999876443
No 495
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.13 E-value=4.3 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQA 94 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~ 94 (564)
-+-.++..|.||||||+..
T Consensus 94 ~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCCeEE
Confidence 4566899999999999985
No 496
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=62.11 E-value=7.5 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 008489 76 VRKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 76 ~~~~viv~apTGsGKT~~~~~ 96 (564)
....+++.|..|+||||.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~ 33 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGE 33 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHH
Confidence 456789999999999998643
No 497
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.10 E-value=5.5 Score=34.54 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.9
Q ss_pred ceEEEEccCCccHHHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALSRL 98 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~~l 98 (564)
-.+++.|++|+|||+..-..+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999864443
No 498
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=62.08 E-value=3.9 Score=35.24 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.2
Q ss_pred eEEEEccCCccHHHHHHH
Q 008489 79 VILHVGPTNSGKTHQALS 96 (564)
Q Consensus 79 ~viv~apTGsGKT~~~~~ 96 (564)
.+++.|++|+|||+.+-.
T Consensus 4 ki~ivG~~~~GKSsli~~ 21 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGT 21 (169)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 489999999999987644
No 499
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=62.05 E-value=3.7 Score=38.29 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHHH
Q 008489 77 RKVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 77 ~~~viv~apTGsGKT~~~~~ 96 (564)
.-.++++|++|+|||+.+-.
T Consensus 29 ~~~i~lvG~~g~GKStlin~ 48 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNS 48 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35799999999999988633
No 500
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=62.04 E-value=3.9 Score=35.62 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHHH
Q 008489 78 KVILHVGPTNSGKTHQALS 96 (564)
Q Consensus 78 ~~viv~apTGsGKT~~~~~ 96 (564)
-.+++.|++|+|||+.+-.
T Consensus 10 ~~i~v~G~~~~GKssl~~~ 28 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLR 28 (181)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3689999999999987643
Done!