BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008491
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 192/460 (41%), Gaps = 33/460 (7%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+A GL +IG++ GD++ + +S ++ L + G I+ N + E ++ + R
Sbjct: 62 VASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASR 121
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPF 164
+L+T +Y +++ A S + + S+ ++ ++ AD + +
Sbjct: 122 AKLLITQAC---YYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQV----- 173
Query: 165 THSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI----AIVGYGEDDVYLHTAP 220
+P+ V + ++SGTTG PKGV+++H LI ++ + + +DV L P
Sbjct: 174 --DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231
Query: 221 LCHIGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV 279
+ HI L+S M L VGA + +PKFE S L +E++ V+ VP +M +A +
Sbjct: 232 MFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL 291
Query: 280 KKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DP 337
K S++ I +GG L EL FP+A+L YGMTE L + +P
Sbjct: 292 DK--HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349
Query: 338 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 397
PG N V G + + P G I RG +M
Sbjct: 350 FDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--------------GEICIRGDQIMKG 395
Query: 398 YWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 457
Y + A E WL +++V R IK G V P E+EA+L+
Sbjct: 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA 455
Query: 458 HPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQ 497
HP + E+ VA V E Q +E Q
Sbjct: 456 HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQ 495
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/492 (25%), Positives = 197/492 (40%), Gaps = 70/492 (14%)
Query: 9 ICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSE 68
+ R AA+ + + T + ++ LA GLL G+ +GD VAI + N
Sbjct: 8 LADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS 67
Query: 69 WYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPS 128
+E I AVA IG I+ P+NYR + E + + P ++V + + Y ++ +PS
Sbjct: 68 EMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV----AGTDYRDIVAGVLPS 123
Query: 129 L---RWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPE-GAV---IICFTSG 181
L + ++G S F +D+ + PF+ APE GA +I T+
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLAS----------DTPFS---APEFGAADGFVIIHTAA 170
Query: 182 TTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHV 241
G P+G +IS L++ + + E DV L PL H+ GL + + G V
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV 230
Query: 242 FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPS 301
KF+ A +E H VT +MA+ A ++ + + G
Sbjct: 231 IAAKFDPAQAARDIEAHKVT-------VMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP 283
Query: 302 ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP- 360
E ++ + P A + +G +ETS TF D P S +P
Sbjct: 284 ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD----------------RPKSAGRPL 327
Query: 361 --QGVCV----GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-KPSVSTGEV 413
+ V V +P P E VG I+ RG V YW+ A + + G
Sbjct: 328 FWRTVAVVDAEDRPLPPGE----------VGEIVLRGPTVFKGYWNNAAATQHAFRNG-- 375
Query: 414 WLXXXXXXXXXXXXNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 471
W ++ GR + IK+GGENVYP EVE L QHP +
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPD 435
Query: 472 ARLTEMVVA-CV 482
+ +E + A CV
Sbjct: 436 PQWSEAIKAVCV 447
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/480 (23%), Positives = 200/480 (41%), Gaps = 51/480 (10%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T ++ + + LA + GL + + +S+ NS + +L FIG VAP N ++
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDM---LT 150
+E ++ +P ++ + L +Q +P ++ + + S +D+ + M +T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQ-KIIIMDSKTDYQGFQSMYTFVT 174
Query: 151 ADILKGYSLRSLPFTHSWAPEG------AVIICFTSGTTGSPKGVVISHSALIVQ-SLAK 203
+ + G++ + + PE +I +SG+TG PKGV + H AL V+ S A+
Sbjct: 175 SHLPPGFN------EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHAR 228
Query: 204 IAIVG--YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT 261
I G D L P H G+ + + L+ G V + +FE + L +++ + +
Sbjct: 229 DPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQ 288
Query: 262 SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 321
S + VP + + LA + K ++ +I +GG L E+ + F + YG
Sbjct: 289 SALLVPTLFSFLAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG 346
Query: 322 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC---- 377
+TET+S++ +TP +P VGK P E KV
Sbjct: 347 LTETTSAIL---------------------ITPKGDDKPG--AVGKVVPFFEAKVVDLDT 383
Query: 378 --SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR 435
+ G + G + RG +M Y + A ++ + WL + ++V R
Sbjct: 384 GKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 443
Query: 436 NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNC 495
IK G V P E+E++LLQHP + E+ A V L +E
Sbjct: 444 KSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEI 503
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 162/402 (40%), Gaps = 49/402 (12%)
Query: 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI----AIVGYGEDDVYLHTAPLCHI 224
+P+ V + ++SGTTG PKGV+++H L+ ++ + + DDV L P+ HI
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282
Query: 225 GGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
L+S M L VGA + +PKFE LE +++ VT VP I+ +A +K
Sbjct: 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY- 341
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
S++ + +G L EL FP AKL YGMTE L M+L
Sbjct: 342 -DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLA-MSL--------- 390
Query: 344 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS------SHVGRILTRGAHVMLR 397
F P V G C G + E+K+ + + G I RG +M
Sbjct: 391 ----GFAK-EPFPVK--SGAC-GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442
Query: 398 YWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 457
Y + A + WL +++V R IK G V P E+EA+L+
Sbjct: 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG 502
Query: 458 HPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCRE 517
HP E+ VA V + + SE + Q +Q
Sbjct: 503 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQ-----------FVSKQVVFY 551
Query: 518 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 559
K + V + + P +GKI R ++R ++ + L S
Sbjct: 552 KRINK-------VFFTESIPKAPSGKILRKDLRAKLANGLGS 586
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 108/477 (22%), Positives = 197/477 (41%), Gaps = 51/477 (10%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T ++ + + LA + GL + + + + NS + +L FIG VAP N ++
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDM---LT 150
+E ++ +P ++ + L +Q +P ++ + + S +D+ + M +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQ-KIIIMDSKTDYQGFQSMYTFVT 169
Query: 151 ADILKGYSLRSLPFTHSWAPEG------AVIICFTSGTTGSPKGVVISH-SALIVQSLAK 203
+ + G++ + + PE +I +SG+TG PKGV + H +A + S A+
Sbjct: 170 SHLPPGFN------EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 204 IAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT 261
I G D L P H G+ + + L+ G V + +FE + L +++ + +
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 262 SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 321
S + VP + + A + K ++ +I +GG L E+ + F + YG
Sbjct: 284 SALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG 341
Query: 322 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC---- 377
+TET+S++ +TP +P VGK P E KV
Sbjct: 342 LTETTSAIL---------------------ITPEGDDKPG--AVGKVVPFFEAKVVDLDT 378
Query: 378 --SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR 435
+ G + G + RG +M Y + A ++ + WL + ++V R
Sbjct: 379 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 438
Query: 436 NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
IK G V P E+E++LLQHP + E+ A V L +E
Sbjct: 439 KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 108/477 (22%), Positives = 197/477 (41%), Gaps = 51/477 (10%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T ++ + + LA + GL + + + + NS + +L FIG VAP N ++
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDM---LT 150
+E ++ +P ++ + L +Q +P ++ + + S +D+ + M +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQ-KIIIMDSKTDYQGFQSMYTFVT 169
Query: 151 ADILKGYSLRSLPFTHSWAPEG------AVIICFTSGTTGSPKGVVISH-SALIVQSLAK 203
+ + G++ + + PE +I +SG+TG PKGV + H +A + S A+
Sbjct: 170 SHLPPGFN------EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 204 IAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT 261
I G D L P H G+ + + L+ G V + +FE + L +++ + +
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQ 283
Query: 262 SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 321
S + VP + + A + K ++ +I +GG L E+ + F + YG
Sbjct: 284 SALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYG 341
Query: 322 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC---- 377
+TET+S++ +TP +P VGK P E KV
Sbjct: 342 LTETTSAIL---------------------ITPEGDDKPG--AVGKVVPFFEAKVVDLDT 378
Query: 378 --SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR 435
+ G + G + RG +M Y + A ++ + WL + ++V R
Sbjct: 379 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 438
Query: 436 NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
IK G V P E+E++LLQHP + E+ A V L +E
Sbjct: 439 KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE 495
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 107/476 (22%), Positives = 195/476 (40%), Gaps = 49/476 (10%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T ++ + + LA + GL + + + + NS + +L FIG VAP N ++
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTA 151
+E ++ +P ++ + L +Q +P ++ + + S + F + +T+
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDYQGFQSMYTFVTS 175
Query: 152 DILKGYSLRSLPFTHSWAPEG------AVIICFTSGTTGSPKGVVISH-SALIVQSLAKI 204
+ G++ + + PE +I +SG+TG PKGV + H +A + S A+
Sbjct: 176 HLPPGFN------EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 229
Query: 205 AIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 262
I G D L P H G+ + + L+ G V + +FE + L +++ + + S
Sbjct: 230 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 263 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322
+ VP + + A + K ++ +I +GG L E+ + F + YG+
Sbjct: 290 ALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 347
Query: 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC----- 377
TET+S++ +TP +P VGK P E KV
Sbjct: 348 TETTSAIL---------------------ITPEGDDKPG--AVGKVVPFFEAKVVDLDTG 384
Query: 378 -SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRN 436
+ G + G + RG +M Y + A ++ + WL + ++V R
Sbjct: 385 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 444
Query: 437 GRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
IK G V P E+E++LLQHP + E+ A V L +E
Sbjct: 445 SLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE 500
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 191/471 (40%), Gaps = 45/471 (9%)
Query: 37 QFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEA 96
++++ L + L GL +A+ + N E + ++A FIG VAP N ++ +E
Sbjct: 57 EYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 97 SRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADIL-- 154
++ +P ++ + + + +Q T + +++ V L S V+ R D
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSK----VDYRGYQCLDTFIK 171
Query: 155 ----KGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG- 208
GY S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 172 RNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 209 -YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVP 267
L P H G+ + + L+ G V + KF+ ++ L+ ++ + T++I VP
Sbjct: 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVP 291
Query: 268 AIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 327
+ A L + K ++ +I +GG L E+ + F + YG+TET+S
Sbjct: 292 TLFAILNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 328 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGS 381
++ +TP +P GK P + KV S G
Sbjct: 350 AII---------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGP 386
Query: 382 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKS 441
+ G + +G +M Y + A + E WL + ++V R IK
Sbjct: 387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY 446
Query: 442 GGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
G V P E+E+VLLQHP + E+ A V L +E
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE 497
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 191/471 (40%), Gaps = 45/471 (9%)
Query: 37 QFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEA 96
++++ L + L GL +A+ + N E + ++A FIG VAP N ++ +E
Sbjct: 57 EYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 97 SRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADIL-- 154
++ +P ++ + + + +Q T + +++ V L S V+ R D
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSK----VDYRGYQCLDTFIK 171
Query: 155 ----KGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG- 208
G+ S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 209 -YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVP 267
L P H G+ + + L+ G V + KF+ ++ L+ ++ + TS+I VP
Sbjct: 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP 291
Query: 268 AIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 327
+ A L + K ++ +I +GG L E+ + F + YG+TET+S
Sbjct: 292 TLFAILNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 328 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGS 381
++ +TP +P GK P + KV S G
Sbjct: 350 AII---------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGP 386
Query: 382 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKS 441
+ G + +G +M Y + A + E WL + ++V R IK
Sbjct: 387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY 446
Query: 442 GGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
G V P E+E+VLLQHP + E+ A V L +E
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE 497
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 191/471 (40%), Gaps = 45/471 (9%)
Query: 37 QFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEA 96
++++ L + L GL +A+ + N E + ++A FIG VAP N ++ +E
Sbjct: 57 EYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 97 SRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADIL-- 154
++ +P ++ + + + +Q T + +++ V L S V+ R D
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSK----VDYRGYQCLDTFIK 171
Query: 155 ----KGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQ-SLAKIAIVG- 208
G+ S E +I +SG+TG PKGV ++H ++ + S A+ I G
Sbjct: 172 RNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN 231
Query: 209 -YGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVP 267
L P H G+ + + L+ G V + KF+ ++ L+ ++ + TS+I VP
Sbjct: 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP 291
Query: 268 AIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 327
+ A L + K ++ +I +GG L E+ + F + YG+TET+S
Sbjct: 292 TLFAILNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 328 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGS 381
++ +TP +P GK P + KV S G
Sbjct: 350 AII---------------------ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGP 386
Query: 382 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKS 441
+ G + +G +M Y + A + E WL + ++V R IK
Sbjct: 387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY 446
Query: 442 GGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSE 492
G V P E+E+VLLQHP + E+ A V L +E
Sbjct: 447 KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE 497
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 127/520 (24%), Positives = 199/520 (38%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS---IRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G +P +++ P K ++AYG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNAYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/479 (22%), Positives = 194/479 (40%), Gaps = 50/479 (10%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T ++ + LA + GL +A+ + NS + + FIG VAP N ++
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNE 145
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDM---LT 150
+E +++ +P ++ + + L +Q +P ++ V L S D++ K+ M +
Sbjct: 146 RELYNSLSISQPTIVFCSKRALQKILGVQKK-LPIIQKIVIL-DSREDYMGKQSMYSFIE 203
Query: 151 ADILKGYSLRSLPFTHSWAPE------GAVIICFTSGTTGSPKGVVISHSALIVQ-SLAK 203
+ + G++ + + P+ +I +SG+TG PKGV ++H + V+ S +
Sbjct: 204 SHLPAGFN------EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCR 257
Query: 204 IAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT 261
+ G D L P H G+ + + L G V + +FE + L +++ + +
Sbjct: 258 DPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQ 317
Query: 262 SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 321
S + VP + + A V K ++ +I +GG L E+ + F + YG
Sbjct: 318 SALLVPTLFSFFAKSTLVDKY--DLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYG 375
Query: 322 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC---- 377
+TET+S++ +TP G C GK P K+
Sbjct: 376 LTETTSAII---------------------ITPRGRDDKPGAC-GKVVPFFSAKIVDLDT 413
Query: 378 --SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR 435
+ G + G + +G +M Y + A ++ + WL ++V R
Sbjct: 414 GKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRL 473
Query: 436 NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESN 494
IK G V P E+E++LLQHP + E+ A V L E +E
Sbjct: 474 KSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQE 532
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 127/520 (24%), Positives = 198/520 (38%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS---IRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V I +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 198/520 (38%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS---IRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNGYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 198/520 (38%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS---IRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 197/520 (37%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAIT---SIRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G P +++ P K ++ YG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATXPDAVLETVHQHLPGEK-VNIYGTTEAXNSLYXRQPKTGTEXAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR + I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 197/520 (37%), Gaps = 82/520 (15%)
Query: 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS---IRPVMLV 109
GLR VA+ A NS + ILA+ +G + A LN R E + I V+ V
Sbjct: 50 GLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109
Query: 110 TDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG---YSLRSLPFTH 166
+ +D+ + GS + R + D+++ YS
Sbjct: 110 GRQVADAIFQS---------------GSGA------RIIFLGDLVRDGEPYSYGPPIEDP 148
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVG--YGEDDVYLHTAPLCHI 224
P I +TSGTTG PK +I A + L VG +G +V L PL H+
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 225 GGLSSAM-AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
G + + A L + +V + +F AL+ V+Q VTSL P + LA +
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
DS++ + G +P +++ P K ++ YG TE +SL T PG
Sbjct: 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 344 -----QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRY 398
++ + G V + +G EL V + S+ VG
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEG----------ELIVAASDSAFVG------------- 364
Query: 399 WDQFLAKPSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVL 455
+L +P + ++ W V ++GR I SGGEN++P E+E VL
Sbjct: 365 ---YLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVL 421
Query: 456 LQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHC 515
P A+ R + V ACV R S D C
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFC 465
Query: 516 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 555
R L FK P+ + + + P + K+ R ++ ++V S
Sbjct: 466 RSSELADFKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 188/508 (37%), Gaps = 55/508 (10%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+A L+ GL+ GD VA S L LA GG+ PLN ++ E IT
Sbjct: 41 VANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE 100
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSS-SDFVNKRDMLTADILKGYSLRSLP 163
P ++V D S + ++ G S +D A I +G
Sbjct: 101 PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRG------- 153
Query: 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 223
+ I +TSGTTG KG +SH L SL + + DDV +H P+ H
Sbjct: 154 ------ADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYH 207
Query: 224 IGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 282
GL A + L +F+PKF+ L+ + V L VP L R+ K
Sbjct: 208 THGLFVASNVTLFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKE 265
Query: 283 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 342
G + ++G L ++ +E + A ++ YG TET+ + + YD
Sbjct: 266 TTGH--XRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETNXNTS--NPYDGD---- 316
Query: 343 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 402
++P A G P + GK P +G I +G +V YW
Sbjct: 317 -RVPGAVGPALPGVSARVTDPETGKELPR----------GDIGXIEVKGPNVFKGYWRXP 365
Query: 403 LAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 462
S + + V ++GR + +GG NVYP+E+E+ + P
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVV 425
Query: 463 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 522
+A E V A V + E+ H + L
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDKGATIDEAQV-----------------LHGLDGQLAK 468
Query: 523 FKAPRLFVLWRKPFPLTSTGKIRRDEVR 550
FK P+ V++ P + GK++++ +R
Sbjct: 469 FKXPKK-VIFVDDLPRNTXGKVQKNVLR 495
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 128/558 (22%), Positives = 218/558 (39%), Gaps = 66/558 (11%)
Query: 9 ICQCLSRIAAV----KRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISA 64
I Q L+RI V +S+ I G R + + + NLA L E GL GD +
Sbjct: 28 IDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQL 87
Query: 65 LN-SEWYLEWILAVAFIGGIVAPLNYRWSFK--EASRAITSIRPVMLVTDES----SDSW 117
N +E+Y I+ A + V LN +S + E + I I+P +L+ S++
Sbjct: 88 PNVAEFY---IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQ 144
Query: 118 YLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIIC 177
+++ H S + L ++DF D ++ + + F+ + A E A
Sbjct: 145 FIDSLHDVNLSPEIILMLNHQATDFG------LLDWIETPAETFVDFSSTPADEVA-FFQ 197
Query: 178 FTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLM 235
+ G+TG+PK + +H+ A I G + L P H LSS A+ +L
Sbjct: 198 LSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257
Query: 236 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK--KIL 293
G C V P E + +++H V VP+ A ++ ++K + +D ++ K+L
Sbjct: 258 AGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPS-----AVIMWLEKAAQYKDQIQSLKLL 312
Query: 294 N-GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 352
GG P L ++ KL +GM E + T + D + T P + +
Sbjct: 313 QVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDE 371
Query: 353 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGE 412
Q + V G+ +G + TRG + Y+ V +
Sbjct: 372 IKIVDEQYREVPEGE----------------IGMLATRGPYTFCGYYQSPEHNSQVFDED 415
Query: 413 VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANA 472
+ N+ +VGR +I GGE + EE+E ++L HP
Sbjct: 416 NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHP------------- 462
Query: 473 RLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLW 532
E++ A + Q+ E +C R+H E + +K P L
Sbjct: 463 ---EVMHAALVAIVDEQFGEKSC-AFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLI 518
Query: 533 RKPFPLTSTGKIRRDEVR 550
PLT+ GK+ + ++R
Sbjct: 519 ES-LPLTAVGKVDKKQLR 535
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 134/576 (23%), Positives = 214/576 (37%), Gaps = 78/576 (13%)
Query: 5 SQAHICQCLSRIAAV-KRNSVVTI--TGNRHNTG-QQFVQDVLNLARGLLEIGLRSGDIV 60
+ ++ L R AA+ R VV+ TG H T + Q L GL +G+ GD V
Sbjct: 16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 75
Query: 61 AISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLE 120
A N +LE AV +G ++ N R S KE + + +L+ D
Sbjct: 76 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD--------- 126
Query: 121 LQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAP-----EGAVI 175
P+L V V ++ +GY P A
Sbjct: 127 ------PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACG 180
Query: 176 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAM 233
+ +T+GTTG PKGVV SH AL++ SLA + G E DV L P+ H+ A
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 234 LMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 292
+VGA V P+ + S +E + VT VP + LA + + T +++++
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL--ESTGHRLKTLRRL 298
Query: 293 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 352
+ GG P L+ A ++ YG+TETS + Q F
Sbjct: 299 VVGGSAAPRSLI--ARFERMGVEVRQGYGLTETSPVVV----------------QNFVKS 340
Query: 353 TPNSVHQPQGVCV----GKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLRYWD 400
S+ + + + + G P P V L+V DG + +G + +G + Y+
Sbjct: 341 HLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA-LGEVQLKGPWITGGYYG 399
Query: 401 QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPX 460
A S T + + V + R IKSGGE + ++E L+ HP
Sbjct: 400 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK 459
Query: 461 XXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNL 520
+ + E +A V R E +H +
Sbjct: 460 VKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEE-----------------LNEHLLKAGF 502
Query: 521 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 556
++ P +V + P TS GK + +R + ++
Sbjct: 503 AKWQLPDAYVFAEE-IPRTSAGKFLKRALREQYKNY 537
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 157/389 (40%), Gaps = 74/389 (19%)
Query: 176 ICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLM 235
I FTSGTTG K V + ++ +G+ D +L P+ HI GLS + ++
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI 227
Query: 236 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 295
G + KF ++ L ++ +T + VP + L +++ +++KIL G
Sbjct: 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL-----MQQGLHEPYNLQKILLG 282
Query: 296 GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 355
G L + +++ A + +++GMTET S F TP
Sbjct: 283 GAKLSATMIETALQY--NLPIYNSFGMTETCSQ--------------------FLTATPE 320
Query: 356 SVH-QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV- 413
+H +P VG P+ +V++K+ + G ++ +GA+VM Y P+ TG
Sbjct: 321 MLHARPD--TVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYL-----YPTDLTGTFE 373
Query: 414 --WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 471
+ V + RR I SGGEN+YP ++E V Q P
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISD-------- 425
Query: 472 ARLTEMVVACV--------RLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGF 523
CV ++ + + SES+ + K+L +
Sbjct: 426 -------AVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYL------------SKHLAKY 466
Query: 524 KAPRLFVLWRKPFPLTSTGKIRRDEVRRE 552
K P+ F P TSTGK++R+++ RE
Sbjct: 467 KVPKHFE-KVDTLPYTSTGKLQRNKLYRE 494
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 120/509 (23%), Positives = 188/509 (36%), Gaps = 55/509 (10%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+A L+ GL+ GD VA S L LA GG+ PLN ++ E IT
Sbjct: 41 VANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE 100
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSS-SDFVNKRDMLTADILKGYSLRSLP 163
P ++V D S + ++ G S +D A I +G
Sbjct: 101 PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRG------- 153
Query: 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 223
+ I +TSGTTG G ++SH L SL + + DDV +H P+ H
Sbjct: 154 ------ADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYH 207
Query: 224 IGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 282
GL A + L +F+P F+ L+ + + V L+ VP L R+
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXE 265
Query: 283 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 342
G ++ ++G L ++ +E + A ++ YGMTET+ + + YD
Sbjct: 266 TTGH--MRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNMNTS--NPYDGD---- 316
Query: 343 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 402
++P A G P + V P EL +G I G +V YW
Sbjct: 317 -RVPGAVGPALPGVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMP 365
Query: 403 LAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 462
S + + V ++GR + +GG NVYP E+E+ + P
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 463 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 522
+A E V A V L + SE+ H + L
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSEAQV-----------------LHGLDGQLAX 468
Query: 523 FKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551
F P V++ P + G ++ + +R
Sbjct: 469 FXMPXX-VIFVDDLPRNTMGAVQXNVLRE 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/450 (24%), Positives = 171/450 (38%), Gaps = 37/450 (8%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+A L+ GL+ GD VA S L LA GG+ PLN ++ E IT
Sbjct: 41 VANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE 100
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSS-SDFVNKRDMLTADILKGYSLRSLP 163
P ++V D S + ++ G S +D A I +G
Sbjct: 101 PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRG------- 153
Query: 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 223
+ I +TSGTTG G ++SH L SL + + DDV +H P+ H
Sbjct: 154 ------ADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYH 207
Query: 224 IGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 282
GL A + L +F+P F+ L+ + + V L+ VP L R+
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXE 265
Query: 283 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 342
G ++ ++G L ++ +E + A ++ YGMTET+ + + YD
Sbjct: 266 TTGH--MRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNMNTS--NPYDGD---- 316
Query: 343 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 402
++P A G P + V P EL +G I G +V YW
Sbjct: 317 -RVPGAVGPALPGVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMP 365
Query: 403 LAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 462
S + + V ++GR + +GG NVYP E+E+ + P
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 463 XXXXXXXANARLTEMVVACVRLRESWQWSE 492
+A E V A V L + SE
Sbjct: 426 ESAVIGVPHADFGEGVTAFVVLXREFAPSE 455
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 167/440 (37%), Gaps = 37/440 (8%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+A L+ GL+ GD VA S L LA GG+ PLN ++ E IT
Sbjct: 41 VANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE 100
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSS-SDFVNKRDMLTADILKGYSLRSLP 163
P ++V D S + ++ G S +D A I +G
Sbjct: 101 PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRG------- 153
Query: 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 223
+ I +TSGTTG G ++SH L SL + + DDV +H P+ H
Sbjct: 154 ------ADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYH 207
Query: 224 IGGLSSAMAM-LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT 282
GL A + L +F+P F+ L+ + + V L+ VP L R+
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXE 265
Query: 283 WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 342
G ++ ++G L ++ +E + A ++ YGMTET+ + + YD
Sbjct: 266 TTGH--MRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNMNTS--NPYDGD---- 316
Query: 343 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 402
++P A G P + V P EL +G I G +V YW
Sbjct: 317 -RVPGAVGPALPGVSAR-----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMP 365
Query: 403 LAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 462
S + + V ++GR + +GG NVYP E+E+ + P
Sbjct: 366 EXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVV 425
Query: 463 XXXXXXXANARLTEMVVACV 482
+A E V A V
Sbjct: 426 ESAVIGVPHADFGEGVTAVV 445
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 128/321 (39%), Gaps = 44/321 (13%)
Query: 175 IICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAM 233
++ +TSGTTG PKG VI AL A + +DV + PL H+ GL +
Sbjct: 159 LVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGP 218
Query: 234 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLA-TLIRVKKTWKGRDSVKKI 292
L G + +F ++ A + T L VP + +A TL + K + +
Sbjct: 219 LRRGGSVRHLGRFSTEGAARELNDGA-TMLFGVPTMYHRIAETLPADPELAKALAGARLL 277
Query: 293 LNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 349
++G LP E + AT ++I YGMTET
Sbjct: 278 VSGSAALPVHDHERIAAATGR----RVIERYGMTET-----------------------L 310
Query: 350 GNVTPNSVHQPQGVCVGKPAPHVELKVCS---------DGSSHVGRILTRGAHVMLRYWD 400
N + + +P+ VG P P VEL++ DG S VG I RG ++ Y +
Sbjct: 311 MNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES-VGEIQVRGPNLFTEYLN 369
Query: 401 QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHP 459
+ A + T + + V +VGR+ IKSGG + E+E LL+HP
Sbjct: 370 RPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHP 429
Query: 460 XXXXXXXXXXANARLTEMVVA 480
+ L E +VA
Sbjct: 430 EVREAAVTGEPDPDLGERIVA 450
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 113/513 (22%), Positives = 203/513 (39%), Gaps = 71/513 (13%)
Query: 49 LLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108
L +G+ GD VA+ NS + A +G + P+N R + E S +
Sbjct: 60 LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVS---------FI 110
Query: 109 VTDESSDS-WYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHS 167
++D S Y I ++R + +D++ AD L LRS
Sbjct: 111 LSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG------ADSL-AERLRSAAADEP 163
Query: 168 WAPEGA---VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 224
G + I +TSGTTG PKGVV +H ++ + + + + D L P+ H+
Sbjct: 164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHV 223
Query: 225 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 284
L++ + M G + +P+F++ + + V VPAI+ +R +
Sbjct: 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFA 279
Query: 285 GRDS--VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 342
D+ + + GG +P L+K + +++ Y +TE+ T + L + L
Sbjct: 280 ELDAPDFRYFITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLL-LSEDALRKA 336
Query: 343 GQLPQA--FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWD 400
G +A F +V +V GV H E G ++ + ++ YW+
Sbjct: 337 GSAGRATMFTDV---AVRGDDGVI----REHGE-----------GEVVIKSDILLKEYWN 378
Query: 401 QFLA-KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 459
+ A + + G W +++ R I SGGENVYP E+E+V++ P
Sbjct: 379 RPEATRDAFDNG--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVP 436
Query: 460 XXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKN 519
+ + E+ A V + + + SE ++C +
Sbjct: 437 GVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQI----------------VEYCGTR- 478
Query: 520 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 552
L +K P+ V++ + P TGKI + +R +
Sbjct: 479 LARYKLPKK-VIFAEAIPRNPTGKILKTVLREQ 510
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 121/572 (21%), Positives = 202/572 (35%), Gaps = 95/572 (16%)
Query: 13 LSRIAAVKRNSVVTIT-GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYL 71
L R A K + IT GN H + ++ LA G ++G++ D V + N + +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 72 EWILAVAFIGGI---------VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQ 122
E I A+ +G + + + Y F EA+ ++ D S Y L
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAA--------AYIIPDAYSGFDYRSLA 141
Query: 123 ---HTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFT 179
+ +P+L+ ++ + + +F+ D+ T + LP S + +
Sbjct: 142 RQVQSKLPTLK-NIIVAGEAEEFLPLEDLHTEPV-------KLPEVKS---SDVAFLQLS 190
Query: 180 SGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVG 237
G+TG K + +H I + + VYL P+ H LSS + +L G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250
Query: 238 ACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD---SVKKILN 294
V P A +E+ VT VP + ++ + RD S++ +
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQV 305
Query: 295 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 354
GG +E + F L +GM E G V
Sbjct: 306 GGAKFSAEAARRVKAVF-GCTLQQVFGMAE-------------------------GLVNY 339
Query: 355 NSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAK 405
+ P+ + V GKP +P+ E +V D V G +LTRG + + Y+
Sbjct: 340 TRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 406 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 465
+ T + + + + GR +I GGE V EEVE LL HP
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 466 XXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKA 525
+ L E + R+ + RE+ L +K
Sbjct: 460 MVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKI 502
Query: 526 PRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 557
P V + + FP T GK+ + +R + L
Sbjct: 503 PDR-VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 122/554 (22%), Positives = 211/554 (38%), Gaps = 63/554 (11%)
Query: 9 ICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALN-S 67
+ L+R AA +S+ I G R + ++ Q NLA L G++ G+ + N +
Sbjct: 29 LTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVA 86
Query: 68 EWYLEWILAVAFIGGIVAPLNYRWSFK--EASRAITSIRPVMLVTDES----SDSWYLEL 121
E Y+ + A + VAP+ +S + E + + I P +L+ D S +L
Sbjct: 87 ELYITFF---ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNT 143
Query: 122 QHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAV-IICFTS 180
T S+R V L + S + N +D + + FT + +P V +
Sbjct: 144 FVTEHSSIRV-VQLLNDSGEH-NLQDAINHP--------AEDFTATPSPADEVAYFQLSG 193
Query: 181 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVGA 238
GTTG+PK + +H+ + I + + YL P H +SS ++ + + G
Sbjct: 194 GTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253
Query: 239 CHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGG 297
V + +E+H V + + PA+ L LI + + + + K+L GG
Sbjct: 254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES--RAQLASLKLLQVGG 311
Query: 298 GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSV 357
S + + +L +GM E L T D + E Q + + V
Sbjct: 312 ARLSATLAARIPAEIGCQLQQVFGMAE---GLVNYTRLDDSAEKIIHT-QGYPMCPDDEV 367
Query: 358 HQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXX 417
G P P E VGR++TRG + Y+ S +
Sbjct: 368 WVADAE--GNPLPQGE----------VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS 415
Query: 418 XXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEM 477
+ + GR +I GGE + EE+E +LL+HP + + E
Sbjct: 416 GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK 475
Query: 478 VVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFP 537
A + ++E + R+ RE+ + FK P V P
Sbjct: 476 SCAYLVVKEPLR------------------AVQVRRFLREQGIAEFKLPDR-VECVDSLP 516
Query: 538 LTSTGKIRRDEVRR 551
LT+ GK+ + ++R+
Sbjct: 517 LTAVGKVDKKQLRQ 530
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 123/572 (21%), Positives = 202/572 (35%), Gaps = 95/572 (16%)
Query: 13 LSRIAAVKRNSVVTIT-GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYL 71
L R A K + IT GN H + ++ LA G ++G++ D V + N + +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 72 EWILAVAFIGGI---------VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQ 122
E I A+ +G + + + Y F EA+ ++ D S Y L
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAA--------AYIIPDAYSGFDYRSLA 141
Query: 123 ---HTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFT 179
+ +P+L+ ++ + + +F+ D+ T + LP S + +
Sbjct: 142 RQVQSKLPTLK-NIIVAGEAEEFLPLEDLHTEPV-------KLPEVKS---SDVAFLQLS 190
Query: 180 SGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS--AMAMLMVG 237
G+TG K + +H I + + VYL P H LSS + +L G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAG 250
Query: 238 ACHVFIPKFESKSALEAVEQHCVTSLITVPAIM---ADLATLIRVKKTWKGRDSVKKILN 294
V P A +E+ VT VP + D A+ R + S++ +
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLS-----SLQVLQV 305
Query: 295 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 354
GG +E + F L +G E G V
Sbjct: 306 GGAKFSAEAARRVKAVF-GCTLQQVFGXAE-------------------------GLVNY 339
Query: 355 NSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAK 405
+ P+ + V GKP +P+ E +V D V G +LTRG + + Y+
Sbjct: 340 TRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 406 PSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 465
+ T + + + + GR +I GGE V EEVE LL HP
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 466 XXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKA 525
+ L E + R+ + RE+ L +K
Sbjct: 460 XVSXPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKI 502
Query: 526 PRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 557
P V + + FP T GK+ + +R + L
Sbjct: 503 PDR-VEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/384 (23%), Positives = 150/384 (39%), Gaps = 53/384 (13%)
Query: 178 FTSGTTGSPKGVVISHSALI-VQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM-LM 235
++SG+TG PKG V +H+ L L I+G E+DV A L GL + + L
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS 249
Query: 236 VGACHVFIPKFESKSALEA-VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 294
VGA + + + + A+ A + +H T VP + A++ L+ + +++ +
Sbjct: 250 VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANM--LVSPNLPARADVAIRICTS 307
Query: 295 GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 354
G LP E+ + T F +++ G TE F++
Sbjct: 308 AGEALPREIGERFTAHF-GCEILDGIGSTEMLH--IFLS--------------------- 343
Query: 355 NSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQFLAKPSV 408
N + G+P P E+++ D + H VG + +G + YW+ +
Sbjct: 344 NRAGAVEYGTTGRPVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRAT 402
Query: 409 STGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXX 468
GE W+ GR + +K G+ V P EVE VL+QH
Sbjct: 403 FLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG 461
Query: 469 XANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRL 528
+ L + A V L+ + SE ++ + L K PR
Sbjct: 462 VDHGGLVK-TRAFVVLKREFAPSEILAEELKAFV--------------KDRLAPHKYPRD 506
Query: 529 FVLWRKPFPLTSTGKIRRDEVRRE 552
V + P T+TGKI+R ++R +
Sbjct: 507 IV-FVDDLPKTATGKIQRFKLREQ 529
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 156/408 (38%), Gaps = 74/408 (18%)
Query: 171 EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYG---EDDVYLHTAPLCHIGG- 226
E ++ F+SGT G PK ++ H L I Y EDD +T G
Sbjct: 225 EDICLVYFSSGTAGFPK--MVEHDN--TYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC 280
Query: 227 LSSAMAMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
+ + + C VF+ +FE+K+ LE ++ VT+ P I LI+ +
Sbjct: 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTI---YRFLIKEDLSH 337
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
++K + G L E+ F KL+ +G TET ++ +P PG
Sbjct: 338 YNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETVVTIATFPWMEPK---PG 393
Query: 344 QLPQAFGNVTPNSVHQPQGVCVGKPAP--HVEL--------KVCSDGSSHVGRILTRGAH 393
+GKP P +EL +V +G + + +
Sbjct: 394 S--------------------IGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG 433
Query: 394 VMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXN----VWLVGRRNGRIKSGGENVYPE 449
+ + Y K T E W + +W VGR + IK+ G V P
Sbjct: 434 LFVHY-----GKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF 488
Query: 450 EVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXX 509
EVE+ L+QHP + +++ A + L + + S+S ++
Sbjct: 489 EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNE------------ 536
Query: 510 XXRQHCREKNLTG-FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 556
+ H KN+T +K PR+ + + P T +GKIRR E+R + S
Sbjct: 537 -LQDHV--KNVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 40/306 (13%)
Query: 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC-HIGGL 227
PE + FTSG+TG PKGV+ H AL L + G+G D+V+L +P+ GL
Sbjct: 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 228 SSAMAMLMVGACHVFIPKFESKSALEA---VEQHCVTSLITVPAIMADLATLIRVKKTWK 284
A+L C + ++ LE V +H VT L + A L + V + +
Sbjct: 271 ELFGALLFGARC--VLQSGQNPDPLEIGELVARHGVTML----QLSASLFNFL-VDEVPE 323
Query: 285 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 344
+ V+ + GG + +A P +L + YG E S+ F T +
Sbjct: 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE---SMGFTTHH--------- 371
Query: 345 LPQAFGNVTPNSVHQPQGVCVGKPAPHV---ELKVCSDGSSHVGRILTRGAHVMLRY--- 398
G+++ ++ P GV + +V +LK ++G+ +G + GA + Y
Sbjct: 372 -AVVAGDLSGTAL--PIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGYVSR 426
Query: 399 ----WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVW-LVGRRNGRIKSGGENVYPEEVEA 453
++F+A P G + V VGR + ++K G V P EVEA
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEA 486
Query: 454 VLLQHP 459
L+ HP
Sbjct: 487 RLVGHP 492
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 149 LTADILKGYSLRSLPFTH---SWAPEGAV------IICFTSGTTGSPKGVVISHSALIVQ 199
L I+ +L+ + FTH + PE AV I +TSG+TG+PKGV I+++ L+
Sbjct: 113 LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-- 170
Query: 200 SLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK---FESKSALEA 254
S K A+ + V+L+ AP + L+ G I K K +
Sbjct: 171 SFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230
Query: 255 VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA 314
+EQ + + P+ A++ L+ + ++K L G LP+E+ ++ FPKA
Sbjct: 231 LEQSDIQVWTSTPS-FAEMC-LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288
Query: 315 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 349
+++ YG TE + ++T + + + L+ LP +
Sbjct: 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 149 LTADILKGYSLRSLPFTH---SWAPEGAV------IICFTSGTTGSPKGVVISHSALIVQ 199
L I+ +L+ + FTH + PE AV I +TSG+TG+PKGV I+++ L+
Sbjct: 113 LPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-- 170
Query: 200 SLAKIAIVGYG--EDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK---FESKSALEA 254
S K A+ + V+L+ AP + L+ G I K K +
Sbjct: 171 SFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230
Query: 255 VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA 314
+EQ + + P+ A++ L+ + ++K L G LP+E+ ++ FPKA
Sbjct: 231 LEQSDIQVWTSTPS-FAEMC-LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288
Query: 315 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 349
+++ YG TE + ++T + + + L+ LP +
Sbjct: 289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 28/294 (9%)
Query: 49 LLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108
L +G+ GD VA+ NS + A +G + P+N R + E S +
Sbjct: 46 LTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVS---------FI 96
Query: 109 VTDESSDS-WYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHS 167
++D S Y I ++R + +D++ AD L LRS
Sbjct: 97 LSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG------ADSL-AERLRSAAADEP 149
Query: 168 WAPEGA---VIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 224
G + I +TSGTTG PKGVV +H ++ + + + + D L P+ H+
Sbjct: 150 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHV 209
Query: 225 GGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK 284
L++ + M G + +P+F++ + + V VPAI+ +R +
Sbjct: 210 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFA 265
Query: 285 GRDS--VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 336
D+ + + GG +P L+K + +++ Y +TE+ T + D
Sbjct: 266 ELDAPDFRYFITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLLLSED 317
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 24/317 (7%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
+ L GA + +P + + + + + V++H V L T P + A + K
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR--ALMAEGDKAI 372
Query: 284 KGRDSVKKILNGGGGLP 300
+G D + G G P
Sbjct: 373 EGTDRSSLRILGSAGEP 389
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 129/580 (22%), Positives = 222/580 (38%), Gaps = 71/580 (12%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTW 283
+ L GA + +P + + + + + V++H V L T P + A + K
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR--ALMAEGDKAI 372
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSF------PKAKLISAYGMTETSSSLTFMTLYDP 337
+G D + G G P + EA + K ++ + TET FM P
Sbjct: 373 EGTDRSSLRILGSVGEP--INPEAWEWYWKKIGKEKCPVVDTWWQTETGG---FMITPLP 427
Query: 338 -TLE-TPGQLPQAFGNVTP----NSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG 391
+E G + F V P N H +G G V +D R L G
Sbjct: 428 GAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN-------LVITDSWPGQARTLF-G 479
Query: 392 AHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 451
H + + ST + W+ GR + + G + E+
Sbjct: 480 DH-------ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532
Query: 452 EAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXX 511
E+ L+ HP +A + + A V L + S
Sbjct: 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--------------LYAE 578
Query: 512 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551
++ EK + P + + W P T +GKI R +R+
Sbjct: 579 VRNWVEKEIGPLATPDV-LHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 26/293 (8%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVP----AIMAD 272
+ L GA + +P + + + + + V++H V L T P A+MA+
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 26/293 (8%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVP----AIMAD 272
+ L GA + +P + + + + + V++H V L T P A+MA+
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 26/293 (8%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVP----AIMAD 272
+ L GA + +P + + + + + V++H V L T P A+MA+
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 26/293 (8%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKE-ASRAITSIRPVMLVTDE---SSDSW 117
I +LA A IG + + + +S + A R I S +++ DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVP----AIMAD 272
+ L GA + +P + + + + + V++H V L T P A+MA+
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 126/333 (37%), Gaps = 69/333 (20%)
Query: 159 LRSLPF--THSWAPEGAVIICFTSGTTGSPKGVVISHSALI------VQSLA-------- 202
L +P+ THS + I FTSGTTG PKGV ISH L+ ++ A
Sbjct: 131 LAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ 190
Query: 203 KIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVTS 262
+A Y D ++ AP +GG A+ +V + K + Q V
Sbjct: 191 MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVA---------DFKQLFTTIAQLPVGI 241
Query: 263 LITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322
+ P+ AD+A ++ ++ G L ++ FP AK+I+AYG
Sbjct: 242 WTSTPS-FADMA-MLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGP 299
Query: 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS-DG- 380
TE + +L+ + + ++ +LP +G P P + DG
Sbjct: 300 TEATVALSAIEITREMVDNYTRLP------------------IGYPKPDSPTYIIDEDGK 341
Query: 381 ---SSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGEVWLXXXXXXXXXXXX 427
S G I+ G V Y + F +P+ TG++
Sbjct: 342 ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG--------SLTED 393
Query: 428 NVWLV-GRRNGRIKSGGENVYPEEVEAVLLQHP 459
N+ L GR + +IK G + E+V L Q P
Sbjct: 394 NILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 119/553 (21%), Positives = 202/553 (36%), Gaps = 82/553 (14%)
Query: 9 ICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSE 68
I Q + + N+V + N T + LAR +E G+ +V I S
Sbjct: 41 IHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI 100
Query: 69 WYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPS 128
ILAV GG P++ + + + + ML+T + L H I +
Sbjct: 101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQK-------HLVH-LIHN 152
Query: 129 LRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKG 188
++++ + D T I +G +L +P S + + A +I +TSGTTG+PKG
Sbjct: 153 IQFNGQVEIFEED--------TIKIREGTNLH-VP---SKSTDLAYVI-YTSGTTGNPKG 199
Query: 189 VVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFES 248
++ H + + + E D A + + L+ GA I K ++
Sbjct: 200 TMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK-DT 258
Query: 249 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 308
+ EQ+ ITV + + ++ S++ ++ G L+ +
Sbjct: 259 INDFVKFEQYINQKEITVITLPPTYVVHLDPERIL----SIQTLITAGSATSPSLVNKWK 314
Query: 309 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP 368
K I+AYG TET+ T + T ET G V +G P
Sbjct: 315 E---KVTYINAYGPTETT---ICATTWVATKETIG-----------------HSVPIGAP 351
Query: 369 APHVELKVCSDG-----SSHVGRILTRGAHVMLRYW-------DQFLAKPSVSTGEVWLX 416
+ ++ + + G + G + YW +F+ P V GE
Sbjct: 352 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVP-GEKLYK 410
Query: 417 XXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTE 476
N+ +GR + ++K G V EEVE++LL+H + + E
Sbjct: 411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQ--E 468
Query: 477 MVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPF 536
C ++ SE + RQ E+ L + P F+ K
Sbjct: 469 QPYLC-----AYFVSEKHI-----------PLEQLRQFSSEE-LPTYMIPSYFIQLDK-M 510
Query: 537 PLTSTGKIRRDEV 549
PLTS GKI R ++
Sbjct: 511 PLTSNGKIDRKQL 523
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 26/293 (8%)
Query: 2 ANYSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVA 61
AN H+ + R A + + ++H + ++ +DV A LL++G++ GD+VA
Sbjct: 79 ANCLDRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVA 136
Query: 62 ISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVT-DE---SSDSW 117
I +LA A IG + + + +S + + I +++T DE + S
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSI 196
Query: 118 YLE------LQHTAIPSLRWHVSLGSSSS--DFVNKRDMLTADILKGYSLRSLPFTHSWA 169
L+ L++ + S+ + L + S D+ RD+ D+++ S P +
Sbjct: 197 PLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQP--EAMN 254
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLS 228
E + I +TSG+TG PKGV+ + +V + V Y D+Y TA + + G S
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 229 SAM-AMLMVGACHVF---IPKFESKSAL-EAVEQHCVTSLITVP----AIMAD 272
+ L GA + +P + + + + + V++H V L T P A+MA+
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 122/582 (20%), Positives = 222/582 (38%), Gaps = 64/582 (10%)
Query: 6 QAHIC-QCLSRIAAVKRNS-VVTITGNRHNTG-----QQFVQDVLNLARGL-LEIGLRSG 57
Q + C C+ R A N + G+ G ++ +++V +A+ L +G+R G
Sbjct: 80 QLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKG 139
Query: 58 DIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITS-IRPVMLVTDESSDS 116
D VA+ + +LA++ IG I + + +S I V++ TDES+
Sbjct: 140 DTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRG 199
Query: 117 W-YLELQHTAIPSLRW-----HV----SLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 166
+E + +LR HV + S F RD+ A K Y P T
Sbjct: 200 GKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY-YPCT- 257
Query: 167 SWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI-AIVGYGEDDVYLHTAPLCHIG 225
E + + +TSG+TG+PKGV S + ++ +L + ++DV+ + I
Sbjct: 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 317
Query: 226 GLSSAMAMLMVGACHVFIPKFESKSAL-------EAVEQHCVTSLITVPAIMADLATLIR 278
G + + ++ C + FE A + +++H VT P L L R
Sbjct: 318 GHTYVVYGPLLYGCATLV--FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTA---LRLLKR 372
Query: 279 VKKTWKGRDSVKKIL---NGGGGLPSELMKEATNSFPKAK--LISAYGMTETSSSLTFMT 333
++ S+K + + G + +E+ + + K + ++ Y TE+ S L
Sbjct: 373 AGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 432
Query: 334 LYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSSHVGRILTRGA 392
T PG F + V P EL ++G V A
Sbjct: 433 AGGVTPMKPGSASFPFFGID---------AVVLDPNTGEELNTSHAEGVLAVKAAWPSFA 483
Query: 393 HVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVE 452
+ + D++L ++ + +W++GR + + G + E+E
Sbjct: 484 RTIWKNHDRYL-DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542
Query: 453 AVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXR 512
A +++ P + + V A V L+ WS + D+ +
Sbjct: 543 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE----------LQDIK 592
Query: 513 QH---CREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551
+H K++ F AP+L +L P T +GKI R +R+
Sbjct: 593 KHLVFTVRKDIGPFAAPKLIIL-VDDLPKTRSGKIMRRILRK 633
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC-HIGGL 227
PE + FTSG+TG PKGV+ H AL L + G+G D+V+L +P+ GL
Sbjct: 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGFGPDEVFLQCSPVSWDAFGL 270
Query: 228 SSAMAMLMVGACHVFIPKFESKSALEA---VEQHCVTSLITVPAIMADLATLIRVKKTWK 284
A+L C + ++ LE V +H VT L + A L + V + +
Sbjct: 271 ELFGALLFGARC--VLQSGQNPDPLEIGELVARHGVTML----QLSASLFNFL-VDEVPE 323
Query: 285 GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMT 333
+ V+ + GG + +A P +L + YG E S+ F T
Sbjct: 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE---SMGFTT 369
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 127/528 (24%), Positives = 203/528 (38%), Gaps = 95/528 (17%)
Query: 53 GLRSGDIVAISALN-SEWYLEWILAVAFIGGIVAP---------LNYRWSFKEASRAITS 102
GL+ GD VA+ EW+L IL G I P + YR +A +AI +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLV-ILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA-KAIVA 152
Query: 103 IRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSD-FVNKRDMLTADILKGYSLRS 161
V+ D + + PSLR + + S D ++N + +L + + +
Sbjct: 153 GDEVIQEVDTVA---------SECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203
Query: 162 LPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYL---HT 218
+ A I FTSGT+G PK S+S+L +++ G D+ T
Sbjct: 204 -------GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDT 256
Query: 219 APLCHIGGLSSAMAMLMVGACHV--FIPKFESKSALEAVEQHCVTSLITVPAIMADLATL 276
+ +I L S M +GAC +PKF+ L+ + + + S++ P + L L
Sbjct: 257 GWILNI--LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML--L 312
Query: 277 IRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 336
+ ++K + G LP L E + + +YG TET LT M
Sbjct: 313 QQDLSSYKFPHLQNCVTVGESLLPETL--ENWRAQTGLDIRESYGQTET--GLTCMVSKT 368
Query: 337 PTLETPG-----------QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVG 385
++ PG Q+ GNV P G+ V KP ++ S +V
Sbjct: 369 MKIK-PGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRV-KP-----IRPIGIFSGYVD 421
Query: 386 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGEN 445
A++ +W L + + + +GR + I S G
Sbjct: 422 NPDKTAANIRGDFW--LLGDRGIKDEDGYFQ--------------FMGRADDIINSSGYR 465
Query: 446 VYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXX 505
+ P EVE L++HP + E+V A V L Q+ + +Q
Sbjct: 466 IGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS--QFLSHDPEQ-------- 515
Query: 506 XXXXXXRQHCREKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVR 550
+QH K++T +K PR FVL P T TGKI+R ++R
Sbjct: 516 -LTKELQQHV--KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRAKLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 127/528 (24%), Positives = 203/528 (38%), Gaps = 95/528 (17%)
Query: 53 GLRSGDIVAISALN-SEWYLEWILAVAFIGGIVAP---------LNYRWSFKEASRAITS 102
GL+ GD VA+ EW+L IL G I P + YR +A +AI +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLV-ILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA-KAIVA 152
Query: 103 IRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSD-FVNKRDMLTADILKGYSLRS 161
V+ D + + PSLR + + S D ++N + +L + + +
Sbjct: 153 GDEVIQEVDTVA---------SECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203
Query: 162 LPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYL---HT 218
+ A I FTSGT+G PK S+S+L +++ G D+ T
Sbjct: 204 -------GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDT 256
Query: 219 APLCHIGGLSSAMAMLMVGACHV--FIPKFESKSALEAVEQHCVTSLITVPAIMADLATL 276
+ +I L S M +GAC +PKF+ L+ + + + S++ P + L L
Sbjct: 257 GWILNI--LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML--L 312
Query: 277 IRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYD 336
+ ++K + G LP L E + + +YG TET LT M
Sbjct: 313 QQDLSSYKFPHLQNCVTVGESLLPETL--ENWRAQTGLDIRESYGQTET--GLTCMVSKT 368
Query: 337 PTLETPG-----------QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVG 385
++ PG Q+ GNV P G+ V KP ++ S +V
Sbjct: 369 MKIK-PGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRV-KP-----IRPIGIFSGYVD 421
Query: 386 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGEN 445
A++ +W L + + + +GR + I S G
Sbjct: 422 NPDKTAANIRGDFW--LLGDRGIKDEDGYFQ--------------FMGRADDIINSSGYR 465
Query: 446 VYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXX 505
+ P EVE L++HP + E+V A V L Q+ + +Q
Sbjct: 466 IGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS--QFLSHDPEQ-------- 515
Query: 506 XXXXXXRQHCREKNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVR 550
+QH K++T +K PR FVL P T TGKI+R ++R
Sbjct: 516 -LTKELQQHV--KSVTAPYKYPRKIEFVL---NLPKTVTGKIQRAKLR 557
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 47/308 (15%)
Query: 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK-IAIVGYGEDDVYLHTAPLCHIGGLS 228
P I +TSGTTG PKG + +H+ +Q L K + + + + D +L + +
Sbjct: 606 PNDPAYIMYTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFLSVSNYA-FDAFT 662
Query: 229 SAMAMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTW- 283
M+ A + I +++ + + Q V + A+ L + W
Sbjct: 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTAL---FNLLTDAGEDWM 719
Query: 284 KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 343
KG ++ IL GG +++A KLI+ YG TE + T ++D
Sbjct: 720 KG---LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHD------- 769
Query: 344 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRY 398
P+S+ + +GKP + + + ++ S VG + G V Y
Sbjct: 770 ---------LPDSI---SSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGY 817
Query: 399 -------WDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 451
++F+ P GE + GR + ++K G + EE+
Sbjct: 818 VNRADLTKEKFIENP-FKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEI 876
Query: 452 EAVLLQHP 459
E L ++P
Sbjct: 877 EKQLQEYP 884
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 116/532 (21%), Positives = 190/532 (35%), Gaps = 81/532 (15%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
LA G+ G+R G+ V + NS Y+ I A+ + P+N + E +
Sbjct: 65 LASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSE 124
Query: 105 PVMLVTDES-SDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163
LV +++ L+ T + + +G + D + D +++ P
Sbjct: 125 ATTLVVHSXLYENFKPVLEKTGVERV---FVVGGEVNSLSEVXDSGSEDF---ENVKVNP 178
Query: 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH 223
E +I +T GTTG PKGV ++H L +L G D + P H
Sbjct: 179 ------EEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFH 232
Query: 224 IGGLSSAMAMLMVGACHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRVKKT 282
+ VG +V F + E +E++ T S PA+ + TL KT
Sbjct: 233 SAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
Query: 283 WKGRDSVKKILNGGG-----GLPSELMKEATN--SFPKAKLISAYGMTETSSSLTFMTLY 335
+ S K+ G L +L+K A + P+ + +G TE +T
Sbjct: 293 YDW--SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT----T 346
Query: 336 DPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DGSS----HVGRILT 389
+P L Q G P +ELKV S DG G I+
Sbjct: 347 NPPLRLDKSTTQ------------------GVPXSDIELKVISLEDGRELGVGESGEIVI 388
Query: 390 RGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLV---------GRRNGRIK 440
RG ++ YW K E W +V + R IK
Sbjct: 389 RGPNIFKGYW-----KREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443
Query: 441 SGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXX 500
G + P E+EA+L +H + E+ A + L+ ++ D
Sbjct: 444 YKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDII-- 501
Query: 501 XXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 552
+ RE+ ++G+K R V + + P T++GK+ R +R +
Sbjct: 502 ------------EWVRER-ISGYKRVRE-VEFVEELPRTASGKLLRRLLREK 539
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 113/288 (39%), Gaps = 41/288 (14%)
Query: 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIR 104
+AR LL G+R GD VA+ + ILA+ G P++ R R
Sbjct: 73 VARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVS---------R 123
Query: 105 PVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPF 164
++ D + + +G R + TA + + P
Sbjct: 124 SDFILADSGASAL-----------------IGEPHEGCAVTRVVRTAAVAECKDAEPGPV 166
Query: 165 THSWAP--EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLC 222
T + P E + +TSGTTG+PKGV + H+ ++ ++ + DD +L L
Sbjct: 167 TGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLS 226
Query: 223 HIGGLSSAMAMLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVP-AIMADLATLIR 278
+ GA V +P + +++ L + VT + P A +A +R
Sbjct: 227 FDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVR 286
Query: 279 VKKTWKGRD--SVKKILNGGGGLPSELMKEATNSF--PKAKLISAYGM 322
GRD ++ ++ GG L + +++ +F + +L++ YG+
Sbjct: 287 -----GGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGI 329
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 87/409 (21%), Positives = 143/409 (34%), Gaps = 84/409 (20%)
Query: 176 ICFTSGTTGSPKGVVISHSALIVQSL-----AKIAIVGYGEDDVYLHTAPLCHIGGLSSA 230
I +TSG+TG+PKGV IS + L QS A + G ++L+ AP S
Sbjct: 148 IIYTSGSTGNPKGVQISAANL--QSFTDWICADFPVSG---GKIFLNQAPF------SFD 196
Query: 231 MAMLMVGACHVFIPKFESKSALEAVEQHCVT-SLITVPAIMADLATLIRVKKT----WKG 285
++++ + C +S L HCVT + P ++ + +KK+ W
Sbjct: 197 LSVMDLYPC------LQSGGTL-----HCVTKDAVNKPKVLFE-----ELKKSGLNVWTS 240
Query: 286 RDSVKKI------------------LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSS 327
S ++ + G LP + K FPKAK+ + YG TE +
Sbjct: 241 TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATV 300
Query: 328 SLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRI 387
++T + + + + LP F N + G+P P E G I
Sbjct: 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE---GQPLPEGE----------KGEI 347
Query: 388 LTRGAHVMLRYWD--QFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGEN 445
+ G V Y + K S W ++ GR + +IK G
Sbjct: 348 VIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYR 407
Query: 446 VYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXX 505
+ EE+E + Q E ++A + E E
Sbjct: 408 MELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAA 467
Query: 506 XXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 554
+L + PR F+ ++ +T+ GKI R + EV+
Sbjct: 468 -------------SLPAYMIPRKFI-YQDHIQMTANGKIDRKRIGEEVL 502
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 153/411 (37%), Gaps = 80/411 (19%)
Query: 37 QFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEA 96
Q + LN+A+ L G +GD V ISA Y+ L G I PL+
Sbjct: 63 QLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSV------- 114
Query: 97 SRAITSIRPVMLVTDESSDSWYLE-------LQHTAIPSLRWHVSL--GSSSSDFVNKRD 147
P VTDE SDS + +A+ + HV+ G S + + D
Sbjct: 115 --------PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSII-EVD 165
Query: 148 MLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIV 207
+L D GY+ + + + + +TSG+T +P GVV SH + V + ++
Sbjct: 166 LLDLDAPNGYTFKEDEYPST------AYLQYTSGSTRTPAGVVXSHQNVRV-NFEQLXSG 218
Query: 208 GYGEDD-------VYLHTAPLCHIGGLSSAMAMLMVGACHV-------FIPKFESKSALE 253
+ + D + P H GL + ++G F+ + L
Sbjct: 219 YFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLX 278
Query: 254 AVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNSF 311
A + H ++ P +LA GRD ++ IL+G + + +K + F
Sbjct: 279 ASDFHAFSA---APNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRF 335
Query: 312 PKAKLIS-----AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVG 366
+ L +YG+ E T+Y T PGQ P+ T + + G
Sbjct: 336 ARFNLQERVIRPSYGLAEA-------TVYVAT-SKPGQPPETVDFDT-------ESLSAG 380
Query: 367 KPAPHVELKVCSDG--SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWL 415
P C+ G +S + L R V + D + P + GE+W+
Sbjct: 381 HAKP------CAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 95/407 (23%), Positives = 150/407 (36%), Gaps = 66/407 (16%)
Query: 34 TGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSF 93
T Q + LN+A+ L G +GD V ISA Y+ L G I PL+
Sbjct: 60 TWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSV---- 114
Query: 94 KEASRAITSIRPVMLVTDESSDSWYLE-------LQHTAIPSLRWHVSL--GSSSSDFVN 144
P VTDE SDS + +A+ + HV+ G S +
Sbjct: 115 -----------PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSII- 162
Query: 145 KRDMLTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI 204
+ D+L D GY+ + + + + +TSG+T +P GVV+SH + V +
Sbjct: 163 EVDLLDLDAPNGYTFKEDEYPST------AYLQYTSGSTRTPAGVVMSHQNVRVN--FEQ 214
Query: 205 AIVGYGED--------DVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESKSALEAVE 256
+ GY D + P H GL + ++G + S A
Sbjct: 215 LMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARW 274
Query: 257 QHCVTS----LITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEATNS 310
H + S P +LA GRD ++ IL+G + + +K +
Sbjct: 275 MHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADR 334
Query: 311 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 370
F + L + S L T+Y T PGQ P+ T + + G P
Sbjct: 335 FARFNLQER--VIRPSYWLAEATVYVAT-SKPGQPPETVDFDT-------ESLSAGHAKP 384
Query: 371 HVELKVCSDG--SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWL 415
C+ G +S + +L R V + D + P + GE+W+
Sbjct: 385 ------CAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 168 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 227
+A + I F+SGTTG PK + +H+ + L + + + + +L +PL
Sbjct: 161 FAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQ-SFLAFAPQMRFLVNSPLSFDAAT 219
Query: 228 SSAMAMLMVGACHVF--IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKG 285
L+ G C V + + + + + S ++ TL+ + G
Sbjct: 220 LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLF---NTLVDLDPDCLG 276
Query: 286 RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 340
++++L GG L ++ A P+ L++ YG TE ++ + D LE
Sbjct: 277 --GLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 36/160 (22%)
Query: 46 ARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPL--------NYRWSFKEAS 97
A+ LL + L+ GD VA+ A S ++E A + G + PL WS K
Sbjct: 62 AKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAK-LQ 120
Query: 98 RAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGY 157
+ S +P ++T D W L L + A D +L
Sbjct: 121 GLLASCQPAAIIT---GDEW-LPLVNAAT-------------------HDNPELHVLSHA 157
Query: 158 SLRSLPFT----HSWAPEGAVIICFTSGTTGSPKGVVISH 193
++LP P + +TSG+T P+GV+I+H
Sbjct: 158 WFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITH 197
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 181 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 240
G P+ ++S V+ I E DV+ + L++ L+V A H
Sbjct: 26 GNKTFPQRFLVSDR-FWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEH 84
Query: 241 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG--GG 298
+ K A H T L+TV +AD A L+R + G I GG GG
Sbjct: 85 RYYGKSLPFGAQSTQRGH--TELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGG 142
Query: 299 LPSELMK 305
+ S ++
Sbjct: 143 MLSAYLR 149
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 167 SWAP-----EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHT-AP 220
SW P + +TSG+T PKGV +SH L+ +L KI + D+ + + P
Sbjct: 158 SWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLL-DNLNKIFTSFHXNDETIIFSWLP 216
Query: 221 LCHIGGLSSAMAMLMVGA 238
H GL + + G
Sbjct: 217 PHHDXGLIGCILTPIYGG 234
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 5/127 (3%)
Query: 181 GTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 240
G P+ ++S V+ I E DV+ + L++ L+V A H
Sbjct: 23 GNKTFPQRFLVSDR-FWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEH 81
Query: 241 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG--GG 298
+ K A H T L+TV +AD A L+R + G I GG GG
Sbjct: 82 RYYGKSLPFGAQSTQRGH--TELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGG 139
Query: 299 LPSELMK 305
S ++
Sbjct: 140 XLSAYLR 146
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 368 PAP---HVELKVCSDGSSHVGRILTRGAHVMLRYWD 400
P P H + +C D ++H+GR+L G L+ +D
Sbjct: 9 PEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,747,395
Number of Sequences: 62578
Number of extensions: 604608
Number of successful extensions: 1328
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 101
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)