Query 008491
Match_columns 564
No_of_seqs 165 out of 2396
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.5E-80 1.5E-84 646.4 47.9 504 5-563 23-539 (539)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3E-79 1E-83 640.1 45.3 501 6-554 21-534 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 3.1E-78 1.1E-82 629.2 49.4 499 3-558 12-516 (517)
4 2d1s_A Luciferase, luciferin 4 100.0 8.8E-78 3E-82 629.9 50.6 504 7-560 25-548 (548)
5 3g7s_A Long-chain-fatty-acid-- 100.0 1.4E-78 4.8E-83 637.0 44.4 504 3-556 15-543 (549)
6 3rix_A Luciferase, luciferin 4 100.0 3.4E-79 1.2E-83 641.8 32.9 512 4-563 17-549 (550)
7 4fuq_A Malonyl COA synthetase; 100.0 5.1E-78 1.7E-82 625.5 41.0 489 11-557 4-502 (503)
8 1v25_A Long-chain-fatty-acid-C 100.0 1.6E-77 5.4E-82 627.5 42.8 509 7-559 18-540 (541)
9 3o83_A Peptide arylation enzym 100.0 1.6E-78 5.5E-83 635.4 34.7 502 4-556 27-541 (544)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.1E-76 7.3E-81 614.3 49.0 486 7-554 2-503 (504)
11 1pg4_A Acetyl-COA synthetase; 100.0 2.2E-76 7.5E-81 630.7 47.7 516 7-560 76-626 (652)
12 3ivr_A Putative long-chain-fat 100.0 1.3E-77 4.4E-82 624.5 37.3 495 4-558 3-504 (509)
13 3fce_A D-alanine--poly(phospho 100.0 8.6E-77 2.9E-81 618.8 42.7 493 7-556 1-505 (512)
14 3ipl_A 2-succinylbenzoate--COA 100.0 8.1E-77 2.8E-81 617.7 41.9 494 7-556 1-498 (501)
15 3e7w_A D-alanine--poly(phospho 100.0 3.7E-76 1.3E-80 613.5 45.9 492 7-556 1-504 (511)
16 3etc_A AMP-binding protein; ad 100.0 5.7E-76 2E-80 618.9 47.1 499 9-556 58-580 (580)
17 3rg2_A Enterobactin synthase c 100.0 7.1E-76 2.4E-80 624.3 47.7 502 4-559 24-538 (617)
18 4dg8_A PA1221; ANL superfamily 100.0 4.3E-76 1.5E-80 623.0 41.2 479 4-559 24-517 (620)
19 1amu_A GRSA, gramicidin synthe 100.0 7.3E-76 2.5E-80 616.4 41.3 476 6-553 38-527 (563)
20 4gr5_A Non-ribosomal peptide s 100.0 6.9E-77 2.3E-81 626.6 31.4 480 6-552 74-568 (570)
21 1ry2_A Acetyl-coenzyme A synth 100.0 3.6E-75 1.2E-79 621.4 44.6 523 7-559 82-641 (663)
22 3l8c_A D-alanine--poly(phospho 100.0 7.8E-76 2.7E-80 613.3 38.7 497 6-558 3-515 (521)
23 3c5e_A Acyl-coenzyme A synthet 100.0 4.3E-74 1.5E-78 603.9 48.3 501 7-557 38-564 (570)
24 3tsy_A Fusion protein 4-coumar 100.0 2.5E-75 8.6E-80 651.7 36.4 516 6-563 60-590 (979)
25 2v7b_A Benzoate-coenzyme A lig 100.0 1.4E-73 4.6E-78 597.2 44.2 495 8-551 25-528 (529)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3E-74 1E-78 597.1 33.1 471 7-551 22-504 (505)
27 2vsq_A Surfactin synthetase su 100.0 4E-72 1.4E-76 640.9 40.5 488 4-557 461-962 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 3E-71 1E-75 588.1 38.0 519 4-556 8-568 (590)
29 3ite_A SIDN siderophore synthe 100.0 2E-71 6.9E-76 585.1 33.7 500 4-556 17-544 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.5E-70 5E-75 581.7 37.4 517 6-562 20-570 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.8E-58 9.7E-63 476.4 29.9 412 2-434 19-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 7.3E-54 2.5E-58 422.9 27.7 317 170-557 36-356 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 1.6E-46 5.3E-51 383.6 30.6 330 168-550 89-439 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 1.1E-46 3.6E-51 384.0 29.3 325 168-547 82-429 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 2.6E-46 8.8E-51 381.3 28.3 327 168-548 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.4E-29 1.2E-33 248.9 17.7 232 168-444 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.5 2.6E-13 8.8E-18 108.1 10.5 100 433-546 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.4 4.8E-13 1.7E-17 106.2 8.9 101 433-547 1-102 (109)
39 4epl_A Jasmonic acid-amido syn 98.9 4.2E-08 1.4E-12 99.6 16.0 87 381-485 390-488 (581)
40 4eql_A 4-substituted benzoates 98.8 5E-08 1.7E-12 99.3 15.5 61 381-458 383-447 (581)
41 4b2g_A GH3-1 auxin conjugating 98.7 1.6E-07 5.5E-12 95.8 14.2 87 381-485 395-493 (609)
42 3qov_A Phenylacetate-coenzyme 92.8 0.59 2E-05 46.3 11.0 107 31-138 104-217 (436)
43 2y27_A Phenylacetate-coenzyme 91.5 1.3 4.4E-05 43.9 11.5 105 32-137 109-220 (437)
44 2y4o_A Phenylacetate-coenzyme 91.2 1.4 4.8E-05 43.7 11.5 105 32-137 111-222 (443)
45 3ipl_A 2-succinylbenzoate--COA 88.1 3.7 0.00013 41.3 12.0 113 20-136 161-283 (501)
46 3g7s_A Long-chain-fatty-acid-- 84.9 13 0.00045 37.8 14.2 105 169-276 32-141 (549)
47 3ivr_A Putative long-chain-fat 84.7 10 0.00035 38.2 13.1 98 169-276 19-120 (509)
48 3rix_A Luciferase, luciferin 4 84.6 5.7 0.0002 40.5 11.3 87 189-276 49-139 (550)
49 3ni2_A 4-coumarate:COA ligase; 84.3 9.8 0.00034 38.6 12.9 100 169-276 35-138 (536)
50 1mdb_A 2,3-dihydroxybenzoate-A 81.9 9 0.00031 38.9 11.5 103 31-137 200-308 (539)
51 3c5e_A Acyl-coenzyme A synthet 81.4 18 0.00062 37.0 13.6 102 169-275 56-162 (570)
52 4gs5_A Acyl-COA synthetase (AM 81.2 8.5 0.00029 36.7 10.3 122 10-137 28-158 (358)
53 1v25_A Long-chain-fatty-acid-C 80.5 18 0.00063 36.6 13.2 101 169-275 31-135 (541)
54 3r44_A Fatty acyl COA syntheta 79.9 20 0.00067 36.2 13.1 98 169-274 29-130 (517)
55 3o83_A Peptide arylation enzym 79.4 9.8 0.00034 38.7 10.7 104 31-138 209-318 (544)
56 2v7b_A Benzoate-coenzyme A lig 78.9 16 0.00054 36.9 12.1 97 169-275 36-136 (529)
57 3etc_A AMP-binding protein; ad 78.6 18 0.00062 37.1 12.5 95 169-268 69-167 (580)
58 1amu_A GRSA, gramicidin synthe 78.5 21 0.00072 36.4 12.9 94 169-272 52-149 (563)
59 1t5h_X 4-chlorobenzoyl COA lig 77.5 21 0.00072 35.7 12.4 97 169-273 15-117 (504)
60 3t5a_A Long-chain-fatty-acid-- 75.9 29 0.00099 34.3 12.9 107 169-276 37-149 (480)
61 4fuq_A Malonyl COA synthetase; 75.2 18 0.00061 36.3 11.1 82 189-271 27-112 (503)
62 3kxw_A Saframycin MX1 syntheta 74.9 11 0.00037 38.8 9.7 104 31-137 185-299 (590)
63 2d1s_A Luciferase, luciferin 4 74.6 14 0.00049 37.5 10.3 86 189-275 51-140 (548)
64 1ry2_A Acetyl-coenzyme A synth 74.6 25 0.00086 36.7 12.4 97 169-269 95-196 (663)
65 4dg8_A PA1221; ANL superfamily 73.6 9.3 0.00032 39.7 8.7 105 31-139 182-288 (620)
66 3fce_A D-alanine--poly(phospho 73.6 7.8 0.00027 39.1 8.0 103 31-136 162-270 (512)
67 3rg2_A Enterobactin synthase c 73.5 22 0.00075 36.8 11.5 104 31-138 202-313 (617)
68 3hgu_A EHPF; phenazine, antibi 73.2 4.1 0.00014 39.1 5.5 104 31-136 109-240 (369)
69 3e7w_A D-alanine--poly(phospho 71.3 11 0.00038 37.9 8.5 103 31-136 161-269 (511)
70 1pg4_A Acetyl-COA synthetase; 70.9 29 0.001 36.1 11.8 96 169-268 89-188 (652)
71 4gr5_A Non-ribosomal peptide s 70.9 36 0.0012 34.7 12.3 91 169-269 88-182 (570)
72 3tsy_A Fusion protein 4-coumar 68.1 19 0.00064 39.8 10.0 99 169-275 74-176 (979)
73 3l8c_A D-alanine--poly(phospho 66.8 40 0.0014 33.8 11.6 79 189-268 28-110 (521)
74 3tbh_A O-acetyl serine sulfhyd 58.9 38 0.0013 31.8 8.9 66 48-113 61-127 (334)
75 3ezx_A MMCP 1, monomethylamine 57.3 65 0.0022 27.9 9.5 82 222-307 104-195 (215)
76 3gqw_A Fatty acid AMP ligase; 56.2 64 0.0022 32.7 11.0 87 189-276 48-145 (576)
77 3ite_A SIDN siderophore synthe 55.9 1E+02 0.0036 31.0 12.5 97 169-268 33-135 (562)
78 3vc3_A Beta-cyanoalnine syntha 49.6 57 0.0019 30.7 8.5 61 53-113 82-142 (344)
79 3nyq_A Malonyl-COA ligase; A/B 44.1 73 0.0025 31.7 8.9 77 189-268 47-124 (505)
80 2jwk_A Protein TOLR; periplasm 44.1 45 0.0015 22.8 5.2 35 7-41 30-64 (74)
81 4eez_A Alcohol dehydrogenase 1 42.7 68 0.0023 30.0 8.0 78 32-112 136-216 (348)
82 1z7w_A Cysteine synthase; tran 37.9 1.3E+02 0.0045 27.8 9.0 65 49-113 57-122 (322)
83 2vsq_A Surfactin synthetase su 36.9 1.6E+02 0.0056 33.5 11.2 91 169-269 477-571 (1304)
84 4aec_A Cysteine synthase, mito 36.1 1.4E+02 0.0049 28.9 9.1 63 50-112 166-229 (430)
85 2q3b_A Cysteine synthase A; py 33.6 1.9E+02 0.0065 26.5 9.3 64 49-113 58-122 (313)
86 2egu_A Cysteine synthase; O-ac 31.3 2.1E+02 0.0071 26.1 9.1 64 49-113 56-120 (308)
87 2pqm_A Cysteine synthase; OASS 31.2 2.1E+02 0.0073 26.6 9.3 64 49-113 69-133 (343)
88 4h1h_A LMO1638 protein; MCCF-l 30.6 1.5E+02 0.0053 27.4 8.1 64 53-116 8-90 (327)
89 3sr3_A Microcin immunity prote 29.0 1.8E+02 0.0061 27.1 8.2 64 53-116 9-91 (336)
90 3dwg_A Cysteine synthase B; su 28.6 2.5E+02 0.0086 25.9 9.2 64 49-113 64-128 (325)
91 1ve1_A O-acetylserine sulfhydr 28.3 3.4E+02 0.012 24.6 10.4 64 49-113 51-117 (304)
92 3tla_A MCCF; serine protease, 28.2 1.7E+02 0.006 27.7 8.0 64 53-116 39-121 (371)
93 3two_A Mannitol dehydrogenase; 28.0 1.4E+02 0.0046 27.9 7.4 74 32-109 149-225 (348)
94 3l6b_A Serine racemase; pyrido 27.9 1.2E+02 0.0041 28.4 6.9 55 61-115 79-133 (346)
95 1h2b_A Alcohol dehydrogenase; 27.7 1.8E+02 0.0063 27.2 8.3 62 48-112 176-239 (359)
96 4h27_A L-serine dehydratase/L- 27.4 1.7E+02 0.0058 27.6 7.9 58 59-116 94-151 (364)
97 2cf5_A Atccad5, CAD, cinnamyl 27.0 1.7E+02 0.0057 27.4 7.8 62 48-112 171-233 (357)
98 3s2e_A Zinc-containing alcohol 26.9 1.6E+02 0.0056 27.2 7.7 77 32-112 139-218 (340)
99 3jv7_A ADH-A; dehydrogenase, n 26.2 1.8E+02 0.0062 27.0 7.9 78 33-113 143-225 (345)
100 1ofu_X SULA, hypothetical prot 25.7 2.2E+02 0.0077 21.7 6.9 53 45-97 46-100 (119)
101 3tqh_A Quinone oxidoreductase; 25.4 1.8E+02 0.0061 26.7 7.6 76 32-112 125-204 (321)
102 4ej6_A Putative zinc-binding d 25.2 3.6E+02 0.012 25.2 9.9 59 48-110 174-233 (370)
103 2jtq_A Phage shock protein E; 24.1 1.8E+02 0.0062 20.1 6.0 46 31-83 22-67 (85)
104 1uuf_A YAHK, zinc-type alcohol 24.0 2.1E+02 0.0071 27.0 7.9 61 47-111 185-245 (369)
105 1wxi_A NH(3)-dependent NAD(+) 23.9 3.9E+02 0.013 23.9 9.3 77 32-111 16-110 (275)
106 4e5s_A MCCFLIKE protein (BA_56 23.8 2.1E+02 0.0071 26.6 7.5 64 53-116 8-90 (331)
107 1wy5_A TILS, hypothetical UPF0 23.5 4.3E+02 0.015 24.1 9.8 72 42-113 8-93 (317)
108 3ijw_A Aminoglycoside N3-acety 23.3 63 0.0022 29.0 3.7 24 43-66 18-41 (268)
109 1zsy_A Mitochondrial 2-enoyl t 22.5 2.5E+02 0.0084 26.2 8.1 78 32-110 139-222 (357)
110 3fpc_A NADP-dependent alcohol 22.0 1.7E+02 0.0057 27.3 6.8 76 32-111 139-218 (352)
111 1yqd_A Sinapyl alcohol dehydro 22.0 2.8E+02 0.0097 25.9 8.4 62 48-112 178-240 (366)
112 2e18_A NH(3)-dependent NAD(+) 21.8 2.3E+02 0.008 24.9 7.4 68 42-112 10-83 (257)
113 2rkb_A Serine dehydratase-like 21.8 2.5E+02 0.0084 25.8 7.8 58 57-115 54-111 (318)
114 1y7l_A O-acetylserine sulfhydr 21.7 3.5E+02 0.012 24.7 8.8 64 49-113 53-117 (316)
115 3sma_A FRBF; N-acetyl transfer 21.4 73 0.0025 28.9 3.7 30 30-66 19-48 (286)
116 2nyg_A YOKD protein; PFAM02522 21.4 72 0.0025 28.8 3.7 22 45-66 18-39 (273)
117 3lvm_A Cysteine desulfurase; s 21.3 5.1E+02 0.018 24.3 10.4 56 55-111 111-170 (423)
118 3ju7_A Putative PLP-dependent 21.2 2E+02 0.0067 27.2 7.1 59 49-110 70-135 (377)
119 4hvk_A Probable cysteine desul 20.5 4E+02 0.014 24.4 9.3 33 55-87 86-118 (382)
120 1pl8_A Human sorbitol dehydrog 20.2 5.1E+02 0.017 23.9 9.8 75 32-111 145-223 (356)
121 4a2c_A Galactitol-1-phosphate 20.2 4.9E+02 0.017 23.8 9.7 63 47-113 151-214 (346)
122 1p5j_A L-serine dehydratase; l 20.1 2.7E+02 0.0091 26.4 7.7 59 57-116 93-151 (372)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.5e-80 Score=646.42 Aligned_cols=504 Identities=21% Similarity=0.294 Sum_probs=429.0
Q ss_pred chhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCcee
Q 008491 5 SQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIV 84 (564)
Q Consensus 5 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~ 84 (564)
...++.++|.++++++|+++|+.++++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhhHHHHHhhcCCcEEEecCCchh-----hHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccC
Q 008491 85 APLNYRWSFKEASRAITSIRPVMLVTDESSDS-----WYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSL 159 (564)
Q Consensus 85 v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (564)
+|+++.++.+++.++++.++++++++++.... ....+ ...++.+..++..++.. . +..+.....
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~ 171 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQV-QSKLPTLKNIIVAGEAE-E---------FLPLEDLHT 171 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHH-HHHCTTCCCEEEESCCT-T---------SEEGGGCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHH-HhcCCCccEEEEcCCcc-c---------hhhhhhccc
Confidence 99999999999999999999999999876422 12222 22345555444433211 0 000110000
Q ss_pred CCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH--HHHHHHHhC
Q 008491 160 RSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMVG 237 (564)
Q Consensus 160 ~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~--~~~~~l~~G 237 (564)
.........++|+++++|||||||.||+|+++|+++.+.+......+++.++++++..+|++|.+++. .++.+++.|
T Consensus 172 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G 250 (539)
T 1mdb_A 172 -EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250 (539)
T ss_dssp -CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred -cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhC
Confidence 11112345689999999999999999999999999999998888889999999999999999999986 588999999
Q ss_pred ccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEE
Q 008491 238 ACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLI 317 (564)
Q Consensus 238 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~ 317 (564)
+++++.+.+++..+++.|+++++|++.++|+.+..+++....... .+++||.+++|||++++++.+++.+.+ +++++
T Consensus 251 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC--CccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 999999989999999999999999999999999999988765443 678999999999999999999999998 89999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcc-eEEEeeCC-----CCCccEEEEec
Q 008491 318 SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV-ELKVCSDG-----SSHVGRILTRG 391 (564)
Q Consensus 318 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~~-----~~~~Gel~v~~ 391 (564)
+.||+||++..+.... ... .....++|+|+++. +++++|++ .|+.|||+++|
T Consensus 328 ~~YG~TE~~~~~~~~~--~~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g 385 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLD--DPE--------------------EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRG 385 (539)
T ss_dssp EEEECTTSCEEECCTT--SCH--------------------HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred EEEcCCCCcccccCCC--CcH--------------------HhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeC
Confidence 9999999653322110 000 00124699999764 89999875 57899999999
Q ss_pred ccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeec
Q 008491 392 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 471 (564)
Q Consensus 392 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~ 471 (564)
++++.||+++++.+...|..+|||+|||+|++++||.++++||.+|+||++|++|+|.+||++|.+||+|.+++|++.++
T Consensus 386 ~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 465 (539)
T 1mdb_A 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPD 465 (539)
T ss_dssp TTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred cccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccc
Confidence 99999999999988888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 008491 472 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551 (564)
Q Consensus 472 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~ 551 (564)
+..++.++++|++.+. ..+.++++++++++.|+.|++|..++++ ++||+|++||++|++|++
T Consensus 466 ~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~l~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~ 527 (539)
T 1mdb_A 466 QFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVSKKALRE 527 (539)
T ss_dssp TTTEEEEEEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBCHHHHHH
T ss_pred cccCceEEEEEEECCC-----------------CCCHHHHHHHHHhCCCCcccCCCEEEEe-ccCCCCCCcCEeHHHHHH
Confidence 8888999999987642 2456889999998449999999998874 889999999999999999
Q ss_pred HHHhhccCCCCC
Q 008491 552 EVMSHLKSLPSN 563 (564)
Q Consensus 552 ~~~~~i~~~~~~ 563 (564)
.+.+.|+.+|++
T Consensus 528 ~~~~~i~~~y~~ 539 (539)
T 1mdb_A 528 AISEKLLAGFKK 539 (539)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHhccccC
Confidence 999999999974
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3e-79 Score=640.14 Aligned_cols=501 Identities=25% Similarity=0.356 Sum_probs=426.5
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeC--CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITG--NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
..++.+.|.++++++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 368999999999999999999985 689999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (564)
++|+++.++.+++.++++.+++++++++......+....... ... ++..+..... ...++.+...... ..
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~------~~~~~~~~~~~~~-~~ 170 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DVK-VMCVDSAPDG------CLHFSELTQADEN-EA 170 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TCE-EEESSCCCTT------CEETHHHHTSCGG-GC
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cce-EEEecCCCCC------ccCHHHHhhcccc-cc
Confidence 999999999999999999999999999988776665553322 122 3333321111 1122222221111 11
Q ss_pred CCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH----HhcCCCCceEEEecCchhhhHHH-HHHHHHHhCc
Q 008491 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGA 238 (564)
Q Consensus 164 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~ 238 (564)
......++|+++++|||||||.||+|+++|+++.+.+..... .+.+.++++++..+|++|.+++. .++.++..|+
T Consensus 171 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 250 (536)
T 3ni2_A 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGA 250 (536)
T ss_dssp CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTC
T ss_pred ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCC
Confidence 233457899999999999999999999999999888766554 34577899999999999999985 5788999999
Q ss_pred cEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEc
Q 008491 239 CHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLIS 318 (564)
Q Consensus 239 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~ 318 (564)
++++.+.+++..+++.|+++++|++.++|+++..+++....... .++++|.+++|||++++++.+.+.+.|+++++++
T Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~ 328 (536)
T 3ni2_A 251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKH--DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328 (536)
T ss_dssp CEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGS--CCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccC--CCccceEEEECCCCCCHHHHHHHHHHCCCCCccc
Confidence 99999999999999999999999999999999999877544433 6789999999999999999999999998999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecc
Q 008491 319 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGA 392 (564)
Q Consensus 319 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~ 392 (564)
.||+||++..++.+........ ....+++|.|+++++++++|++ .|+.|||+++|+
T Consensus 329 ~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 390 (536)
T 3ni2_A 329 GYGMTEAGPVLAMCLAFAKEPF------------------DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390 (536)
T ss_dssp EEECGGGSSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred cccccccchhhhcccccCCccc------------------cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCc
Confidence 9999999976655432211100 0133469999999999999954 578999999999
Q ss_pred cchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecC
Q 008491 393 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 472 (564)
Q Consensus 393 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~ 472 (564)
+++.||++++..+...++++|||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++
T Consensus 391 ~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred ccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence 99999999999999889899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHH
Q 008491 473 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 552 (564)
Q Consensus 473 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~ 552 (564)
..++.++++|+..++ ...+.++|++++++ .|+.|++|..+++ +++||+|++||++|++|+++
T Consensus 471 ~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~-v~~lP~t~~GKi~R~~L~~~ 532 (536)
T 3ni2_A 471 DAGEVPVAFVVKSEK----------------SQATEDEIKQYISK-QVIFYKRIKRVFF-IEAIPKAPSGKILRKNLKEK 532 (536)
T ss_dssp TTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGCCSEEEE-CSCCCBCTTSCBCHHHHHTC
T ss_pred CCCceeEEEEEecCC----------------CCCCHHHHHHHHHH-hccCCccccEEEE-EecCCCCCCCCeeHHHHHHH
Confidence 889999999998775 23567899999998 7999999999877 48899999999999999987
Q ss_pred HH
Q 008491 553 VM 554 (564)
Q Consensus 553 ~~ 554 (564)
+.
T Consensus 533 ~~ 534 (536)
T 3ni2_A 533 LA 534 (536)
T ss_dssp --
T ss_pred hc
Confidence 75
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.1e-78 Score=629.22 Aligned_cols=499 Identities=22% Similarity=0.328 Sum_probs=423.3
Q ss_pred ccchhhHHHHHHHHHhhcCCeEEEEeCCc--cccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhh
Q 008491 3 NYSQAHICQCLSRIAAVKRNSVVTITGNR--HNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFI 80 (564)
Q Consensus 3 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~ 80 (564)
+..+.||.++|.++++++|+++|+++.++ ++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 34567999999999999999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCC
Q 008491 81 GGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLR 160 (564)
Q Consensus 81 G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
|++++|+++.++.+++.++++++++++++++......+..+.... +....++... ............ .
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~-~ 159 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWI----------GADSLAERLRSA-A 159 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEE----------EHHHHHHHHHHC-C
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEcc----------CcccHHHHhhcc-C
Confidence 999999999999999999999999999999988766655543221 1111111110 000111111111 1
Q ss_pred CCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccE
Q 008491 161 SLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 240 (564)
Q Consensus 161 ~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~ 240 (564)
.........++|+++++|||||||.||+|+++|+++.+.+......+++.++++++...|++|..++...+.+++.|+++
T Consensus 160 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~ 239 (517)
T 3r44_A 160 ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTL 239 (517)
T ss_dssp CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEE
Confidence 11223345789999999999999999999999999999999999999999999999999999999998766666699999
Q ss_pred EEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccc
Q 008491 241 VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 320 (564)
Q Consensus 241 v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~y 320 (564)
++.+.+++..+++.|+++++|++.++|+.+..+.+....... .++++|.+++|||++++++.+.+.+. ++++++.|
T Consensus 240 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~Y 315 (517)
T 3r44_A 240 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL--DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGY 315 (517)
T ss_dssp EECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC--CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC--CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEee
Confidence 999999999999999999999999999999999887655444 57899999999999999999999987 89999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC----CCCccEEEEecccchh
Q 008491 321 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVML 396 (564)
Q Consensus 321 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~----~~~~Gel~v~~~~~~~ 396 (564)
|+||+++.++........ ...+++|+|++++++++++++ +...|||+++|++++.
T Consensus 316 G~TE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~ 374 (517)
T 3r44_A 316 ALTESCGGGTLLLSEDAL---------------------RKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLK 374 (517)
T ss_dssp ECGGGTTCEEEECGGGTT---------------------TTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCS
T ss_pred cccccccceeecCCcccc---------------------ccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhh
Confidence 999998766554322110 133469999999999999876 2237999999999999
Q ss_pred hhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccc
Q 008491 397 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 476 (564)
Q Consensus 397 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 476 (564)
||++++..+...| .+|||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++
T Consensus 375 GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~ 453 (517)
T 3r44_A 375 EYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE 453 (517)
T ss_dssp EETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred hhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCc
Confidence 9999998888887 578999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHHhh
Q 008491 477 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 556 (564)
Q Consensus 477 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~~~ 556 (564)
.++++| +.++ ...+.++|++++++ .|+.|++|..++++ ++||+|++||++|++|+++|.+.
T Consensus 454 ~~~a~v-~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 454 IAAAIV-VADQ----------------NEVSEQQIVEYCGT-RLARYKLPKKVIFA-EAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp EEEEEE-EECT----------------TTCCHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTCCBCHHHHHHHHGGG
T ss_pred eEEEEE-ECCC----------------CCCCHHHHHHHHHH-hCCCCCCCCEEEEE-CCCCCCCCcCccHHHHHHHHHhh
Confidence 888888 4443 23567889999998 79999999998874 88999999999999999999988
Q ss_pred cc
Q 008491 557 LK 558 (564)
Q Consensus 557 i~ 558 (564)
+.
T Consensus 515 ~~ 516 (517)
T 3r44_A 515 VP 516 (517)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.8e-78 Score=629.91 Aligned_cols=504 Identities=23% Similarity=0.291 Sum_probs=423.1
Q ss_pred hhHHH-HHHHHHhhcCCeEEEEe--CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 7 AHICQ-CLSRIAAVKRNSVVTIT--GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 7 ~~l~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
.++.+ .|.++++++ +++|+++ .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58889 899999999 9999998 5789999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (564)
++|+++.++.+++.+++++++++++++++.....+..+. ...+....++.++..... .....++.+.........
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 178 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVDY----RGYQCLDTFIKRNTPPGF 178 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSCB----TTBCBHHHHHHHTSCTTC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCcccc----cccccHHHHHhcCccccC
Confidence 999999999999999999999999999988766554433 223333444444432100 011112222211101000
Q ss_pred CCCCCC-----C-CCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH---hcCCCCceEEEecCchhhhHHHH-HHHH
Q 008491 164 FTHSWA-----P-EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSS-AMAM 233 (564)
Q Consensus 164 ~~~~~~-----~-~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~-~~~~ 233 (564)
...... + +++++++|||||||.||+|+++|+++.+.+...... +++.++++++...|++|.+++.. ++.+
T Consensus 179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 011112 4 899999999999999999999999999888777766 67788999999999999999875 5566
Q ss_pred HHhCccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCC
Q 008491 234 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK 313 (564)
Q Consensus 234 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~ 313 (564)
+ .|+++++.+.+++..+++.|+++++|+++++|+++..+.+....... .++++|.+++||+++++++.+.+.+.|++
T Consensus 259 l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (548)
T 2d1s_A 259 I-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKY--DLSNLVEIASGGAPLSKEVGEAVARRFNL 335 (548)
T ss_dssp H-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGS--CCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred h-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccc--cccceeEEEEcCccCCHHHHHHHHHHcCC
Confidence 6 99999999989999999999999999999999999999876443332 57899999999999999999999999988
Q ss_pred CcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEE
Q 008491 314 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRI 387 (564)
Q Consensus 314 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel 387 (564)
+.+++.||+||++..++...... ...+++|+|+|+++++++|++ .|+.|||
T Consensus 336 ~~i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl 392 (548)
T 2d1s_A 336 PGVRQGYGLTETTSAIIITPEGD-----------------------DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392 (548)
T ss_dssp SCCEEEEECGGGSSEEEECCTTC-----------------------CCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred CceeeccccccccceeeecCccc-----------------------CCCCCCCccCCCceEEEEeCCcCccCCCCCCeEE
Confidence 89999999999987665422110 123469999999999999843 5788999
Q ss_pred EEecccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEE
Q 008491 388 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 467 (564)
Q Consensus 388 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~ 467 (564)
+++|++++.||++++..+...++++|||+|||+|++++||.++++||.+|+||.+|++|+|.+||++|.+||+|.+++|+
T Consensus 393 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~ 472 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472 (548)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEE
T ss_pred EECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 99999999999999988888888899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCc-EEEEecCCCCCCCCCCcch
Q 008491 468 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRR 546 (564)
Q Consensus 468 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GK~~R 546 (564)
+.+++..++.++++|++.++ ...+.++|++++++ .|+.+++|. .+++ +++||+|++||++|
T Consensus 473 ~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~~i~~-v~~lP~t~~GKi~r 534 (548)
T 2d1s_A 473 GVPDPVAGELPGAVVVLESG----------------KNMTEKEVMDYVAS-QVSNAKRLRGGVRF-VDEVPKGLTGKIDG 534 (548)
T ss_dssp EEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGSCTTCEEE-CSSCCBCTTSCBCH
T ss_pred EEEcCCCCeeeEEEEEEcCC----------------CCCCHHHHHHHHHH-hccccccccccEEE-ccCCCCCCcchhHH
Confidence 99998888999999998765 12456889999998 799999999 7776 48899999999999
Q ss_pred HHHHHHHHhhccCC
Q 008491 547 DEVRREVMSHLKSL 560 (564)
Q Consensus 547 ~~l~~~~~~~i~~~ 560 (564)
++|++++.+.|++|
T Consensus 535 ~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 535 RAIREILKKPVAKM 548 (548)
T ss_dssp HHHHHHHHSCC---
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999999875
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.4e-78 Score=636.96 Aligned_cols=504 Identities=21% Similarity=0.283 Sum_probs=390.9
Q ss_pred ccchhhHHHHHHHHHhhcCCeEEEEeCC--------ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHH
Q 008491 3 NYSQAHICQCLSRIAAVKRNSVVTITGN--------RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWI 74 (564)
Q Consensus 3 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 74 (564)
.++..++.++|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 15 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 94 (549)
T 3g7s_A 15 YYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTI 94 (549)
T ss_dssp CCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3566799999999999999999999976 89999999999999999999999999999999999999999999
Q ss_pred HHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhh
Q 008491 75 LAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADIL 154 (564)
Q Consensus 75 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (564)
|||+++|++++|+++.++.+++.++++++++++++++......+....... .+..++..+.. .......
T Consensus 95 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~ 163 (549)
T 3g7s_A 95 YALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE---------VNSLSEV 163 (549)
T ss_dssp HHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS---------SSCHHHH
T ss_pred HHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC---------CcCHHHH
Confidence 999999999999999999999999999999999999988766655443221 13333333321 1112222
Q ss_pred hcccCCCCCCCCCCC-CCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHH
Q 008491 155 KGYSLRSLPFTHSWA-PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAM 233 (564)
Q Consensus 155 ~~~~~~~~~~~~~~~-~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 233 (564)
........ ...... ++++++|+|||||||.||+|+++|+++.+.+......+++.++++++..+|++|.+++..++.+
T Consensus 164 ~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~ 242 (549)
T 3g7s_A 164 MDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLM 242 (549)
T ss_dssp HHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTH
T ss_pred HhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 21111111 112223 4899999999999999999999999999999999999999999999999999999999878889
Q ss_pred HHhCccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhh---
Q 008491 234 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS--- 310 (564)
Q Consensus 234 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~--- 310 (564)
+..|+++++.+.+++..+++.|+++++|+++++|+.+..+.+..........++++|.+++||+++++++.+.+.+.
T Consensus 243 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 322 (549)
T 3g7s_A 243 VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAE 322 (549)
T ss_dssp HHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHH
T ss_pred HhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987766544467899999999999999999999987
Q ss_pred -CC--CCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------C
Q 008491 311 -FP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------S 381 (564)
Q Consensus 311 -~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~ 381 (564)
++ ++++++.||+||++.+++....... ....++|.|+++++++++|++ .
T Consensus 323 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~i~d~~~g~~~~~ 380 (549)
T 3g7s_A 323 KCNNPRLRHNQIWGMTEACPMVTTNPPLRL----------------------DKSTTQGVPMSDIELKVISLEDGRELGV 380 (549)
T ss_dssp HSSCTTCEEEEEEECGGGSSEEEECCGGGG----------------------GGTTSCCEECTTCEEEEECSSSCCEECT
T ss_pred hcCCccccccceEeccccchhhhcCCcccc----------------------CcCCCccccCCCCEEEEEeCCCCcCCCC
Confidence 62 3899999999999977665433211 023369999999999999843 6
Q ss_pred CCccEEEEecccchhhhccCCCCCCcccC--CCc--eEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHc
Q 008491 382 SHVGRILTRGAHVMLRYWDQFLAKPSVST--GEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 457 (564)
Q Consensus 382 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~ 457 (564)
|+.|||+++|++++.||++++..+...|. .+| ||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+
T Consensus 381 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 381 GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp TCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTT
T ss_pred CCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 78999999999999999999999888762 455 99999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCC
Q 008491 458 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 537 (564)
Q Consensus 458 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP 537 (564)
||+|.+++|++.+++..++.++++|++.++.. ...+.++|++++++ .|+.|++|..++++ ++||
T Consensus 461 ~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP 524 (549)
T 3g7s_A 461 HEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR--------------GKVDEEDIIEWVRE-RISGYKRVREVEFV-EELP 524 (549)
T ss_dssp STTEEEEEEECCCC------CEEEEEECSTTT--------------TSCCHHHHHHHHHT-TCC-----CCCCEE-EECC
T ss_pred CCCeeeEEEEeeEccccCceEEEEEEECCCcc--------------CcCCHHHHHHHHHH-hccCcccceEEEEe-ccCC
Confidence 99999999999999888999999999887511 12557899999998 79999999988774 7799
Q ss_pred CCCCCCcchHHHHHHHHhh
Q 008491 538 LTSTGKIRRDEVRREVMSH 556 (564)
Q Consensus 538 ~t~~GK~~R~~l~~~~~~~ 556 (564)
+|++||++|++|++++.++
T Consensus 525 ~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 525 RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -------------------
T ss_pred CCCCcCEeHHHHHHHhhcc
Confidence 9999999999999988764
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.4e-79 Score=641.81 Aligned_cols=512 Identities=23% Similarity=0.291 Sum_probs=328.7
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEE---e--CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHH
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTI---T--GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVA 78 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~ 78 (564)
.+..|+.++|.++++++|+++|++ + .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 445699999999999999998875 3 46899999999999999999999999999999999999999999999999
Q ss_pred hhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhccc
Q 008491 79 FIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYS 158 (564)
Q Consensus 79 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (564)
++|++++|+++.++.+++.++++.+++++++++......+.... ...+.+..++..+...... .......+....
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 171 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTDYQ----GFQSMYTFVTSH 171 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSCBT----TBCBHHHHHHHH
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcccc----CcccHHHHhhcc
Confidence 99999999999999999999999999999999988776665543 3445566666555432110 111111111110
Q ss_pred CC------CCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH---hcCCCCceEEEecCchhhhHHHH
Q 008491 159 LR------SLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSS 229 (564)
Q Consensus 159 ~~------~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~ 229 (564)
.. .........++++++++|||||||.||+|+++|+++...+...... .++.++++++..+|++|.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~ 251 (550)
T 3rix_A 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251 (550)
T ss_dssp CCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH
Confidence 00 0111122245789999999999999999999999998887776654 46778999999999999999988
Q ss_pred HHHHHHhCccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHh
Q 008491 230 AMAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN 309 (564)
Q Consensus 230 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~ 309 (564)
.+.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+++....... .+++||.+++|||++++++.+++.+
T Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~ 329 (550)
T 3rix_A 252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAK 329 (550)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGS--CCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccccc--CcccccEEEEecCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999887654443 6789999999999999999999999
Q ss_pred hCCCCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCC
Q 008491 310 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH 383 (564)
Q Consensus 310 ~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~ 383 (564)
.|+...+++.||+||+++.++....... ..+++|+|+|+++++++|++ .|+
T Consensus 330 ~~~~~~v~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~vG~~~~~~~~~i~d~~~~~~~~~g~ 386 (550)
T 3rix_A 330 RFHLPGIRQGYGLTETTSAILITPEGDD-----------------------KPGAVGKVVPFFEAKVVDLDTGKTLGVNQ 386 (550)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECCTTCC-----------------------CTTEEEEECTTCEEEEECTTTCCBCCTTC
T ss_pred HcCCCccccccCcCccccceecCCCCCC-----------------------CCCCcccccCCcEEEEEeCCCCcCCCCCC
Confidence 9943459999999999976665432211 33469999999999999854 578
Q ss_pred ccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccE
Q 008491 384 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 463 (564)
Q Consensus 384 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~ 463 (564)
.|||+++|++++.||++++..+...++++|||+|||+|++++||.++++||.+|+||.+|++|+|.+||++|.+||+|.+
T Consensus 387 ~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 466 (550)
T 3rix_A 387 RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFD 466 (550)
T ss_dssp CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------------
T ss_pred CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcce
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCc-EEEEecCCCCCCCCC
Q 008491 464 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTG 542 (564)
Q Consensus 464 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~G 542 (564)
++|++.+++..++.++++|++.++ ...+.+++++++++ .++.++.|. .+++ +++||+|++|
T Consensus 467 a~vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~~~~~i~~-v~~lP~t~~G 528 (550)
T 3rix_A 467 AGVAGLPDDDAGELPAAVVVLEHG----------------KTMTEKEIVDYVAS-QVTTAKKLRGGVVF-VDEVPKGLTG 528 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeecCCCCceEEEEEEecCC----------------CCCCHHHHHHHHHH-hcccccccCCceEE-EeecCCCCCc
Confidence 999999999899999999998876 23556889999998 688876655 4555 5889999999
Q ss_pred CcchHHHHHHHHhhccCCCCC
Q 008491 543 KIRRDEVRREVMSHLKSLPSN 563 (564)
Q Consensus 543 K~~R~~l~~~~~~~i~~~~~~ 563 (564)
|++|++|++++.+..++-+++
T Consensus 529 Ki~r~~L~~~~~~~~~~~~~~ 549 (550)
T 3rix_A 529 KLDARKIREILIKAKKGGKSK 549 (550)
T ss_dssp ---------------------
T ss_pred ceeHHHHHHHHHhhccccccC
Confidence 999999999999887766554
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.1e-78 Score=625.49 Aligned_cols=489 Identities=25% Similarity=0.352 Sum_probs=415.2
Q ss_pred HHHHHHHhhcCCeEEEE---eCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeec
Q 008491 11 QCLSRIAAVKRNSVVTI---TGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPL 87 (564)
Q Consensus 11 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l 87 (564)
++|.++++++|++.++. +.++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 46889999999988887 477899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCCCCCC
Q 008491 88 NYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTHS 167 (564)
Q Consensus 88 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (564)
++.++.+++.+++++++++++++++.....+..+...... .+...+..... ........ .........
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~ 151 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA---TVETLGPDGRG--------SLTDAAAG-ASEAFATID 151 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC---EEEECCTTSCS--------HHHHHHHT-SCSCCCCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc---eEEEecCCccc--------ccchhhhc-CCCCcCcCC
Confidence 9999999999999999999999998766554443322111 12222211100 01111100 111112234
Q ss_pred CCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH-HHHHHHHhCccEEEccCC
Q 008491 168 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIPKF 246 (564)
Q Consensus 168 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~ 246 (564)
..++|+++++|||||||.||+|+++|+++.+.+......+++.++++++..+|++|.+++. ..+.+++.|+++++.+.+
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 231 (503)
T 4fuq_A 152 RGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF 231 (503)
T ss_dssp CCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSC
T ss_pred CCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999974 577899999999999999
Q ss_pred ChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccccccc
Q 008491 247 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 326 (564)
Q Consensus 247 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~tE~~ 326 (564)
++..+++.++ ++|+++++|+++..++........ .++++|.+++||+++++++.+.+.+.+ ++++++.||+||++
T Consensus 232 ~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~ 306 (503)
T 4fuq_A 232 DPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE--TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETN 306 (503)
T ss_dssp CHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT--TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTE
T ss_pred CHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc--chhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccC
Confidence 9999999998 899999999999999876544333 568999999999999999999999998 89999999999998
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecccchhhhcc
Q 008491 327 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYWD 400 (564)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~~~~~gy~~ 400 (564)
..+...... ....+++|+|+++++++++|++ .|+.|||+++|++++.||++
T Consensus 307 ~~~~~~~~~-----------------------~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 307 MNTSNPYDG-----------------------DRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECBCCCSSS-----------------------CCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTT
T ss_pred cccccCCCC-----------------------CCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcC
Confidence 654321110 0133469999999999999943 68899999999999999999
Q ss_pred CCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccceEEE
Q 008491 401 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 480 (564)
Q Consensus 401 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 480 (564)
++..+...|.++|||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHHhhc
Q 008491 481 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 557 (564)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~~~i 557 (564)
+|++.++ ...+.+++++++++ .|+.|++|..++++ ++||+|++||++|++|+++|.+..
T Consensus 444 ~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 444 VVVRDKG----------------ATIDEAQVLHGLDG-QLAKFKMPKKVIFV-DDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEECTT----------------CCCCHHHHHHHHBT-TBCGGGCCSEEEEE-SCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEeCCC----------------CCCCHHHHHHHHHh-hcccCCCCCEEEEE-CCCCCCcccceeHHHHHHHHHHhh
Confidence 9998876 23567889999998 79999999998875 889999999999999999986543
No 8
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.6e-77 Score=627.48 Aligned_cols=509 Identities=25% Similarity=0.330 Sum_probs=389.1
Q ss_pred hhHHHHHHHHHhhcCCeEEEEe----CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCc
Q 008491 7 AHICQCLSRIAAVKRNSVVTIT----GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGG 82 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~ 82 (564)
.++.++|.++++++|+++|+.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 97 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 97 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 5799999999999999999994 567999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCC
Q 008491 83 IVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSL 162 (564)
Q Consensus 83 ~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (564)
+++|+++.++.+++.+++++++++++|+++.....+.... ..++.+..++.+++.... ....++........
T Consensus 98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-- 169 (541)
T 1v25_A 98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE-----GYLAYEEALGEEAD-- 169 (541)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT-----TCEEHHHHCCSCCC--
T ss_pred EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCCc-----ccccHHHHhhccCC--
Confidence 9999999999999999999999999999987665554432 234455555554432210 11122222211111
Q ss_pred CCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHH--HHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccE
Q 008491 163 PFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAK--IAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACH 240 (564)
Q Consensus 163 ~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~ 240 (564)
.....++++++++|||||||.||+|+++|+++....... ...+++.+++++++.+|++|.+++...+.+++.|+++
T Consensus 170 --~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~ 247 (541)
T 1v25_A 170 --PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQ 247 (541)
T ss_dssp --CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEE
T ss_pred --cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceE
Confidence 123467899999999999999999999999998766552 2456778899999999999999987788899999999
Q ss_pred EEccC-CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcc
Q 008491 241 VFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 319 (564)
Q Consensus 241 v~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~ 319 (564)
++.+. +++..+++.|+++++|+++++|+.+..+++....... .++++|.+++||+++++++.+.+ +.+ ++++++.
T Consensus 248 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~ 323 (541)
T 1v25_A 248 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG 323 (541)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred EeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC--cchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence 99875 7999999999999999999999999999988765443 57899999999999999999999 666 8999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCCC-------CCccEEEEecc
Q 008491 320 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVGRILTRGA 392 (564)
Q Consensus 320 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~-------~~~Gel~v~~~ 392 (564)
||+||++..++.......... .++. .......++|+|+|+++++++|++. ++.|||+++|+
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~ 391 (541)
T 1v25_A 324 YGLTETSPVVVQNFVKSHLES-----------LSEE-EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGP 391 (541)
T ss_dssp EECGGGSSEEEECCCCGGGTT-----------SCHH-HHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEEST
T ss_pred ccccccccceecccccccccc-----------cCcc-ccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCc
Confidence 999999876654422110000 0000 0000224699999999999999751 25899999999
Q ss_pred cchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecC
Q 008491 393 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 472 (564)
Q Consensus 393 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~ 472 (564)
+++.||++++..+...+..+|||+|||+|++++||.++++||.+|+||.+|++|+|.+||++|.+||+|.+++|++.+++
T Consensus 392 ~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 471 (541)
T 1v25_A 392 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 471 (541)
T ss_dssp TSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECS
T ss_pred chhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCC
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHH
Q 008491 473 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 552 (564)
Q Consensus 473 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~ 552 (564)
..++.++++|++... ..+.+++++++++..|+.|++|..++++ ++||+|++||++|++|++.
T Consensus 472 ~~~~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~~ 533 (541)
T 1v25_A 472 KWQERPLAVVVPRGE-----------------KPTPEELNEHLLKAGFAKWQLPDAYVFA-EEIPRTSAGKFLKRALREQ 533 (541)
T ss_dssp SSSEEEEECC------------------------------------CCCTTTSCSBC---------------CCTTHHHH
T ss_pred CcCceEEEEEEECCC-----------------CCCHHHHHHHHHhccCccccCCcEEEEe-CCCCCCCccCeeHHHHHHH
Confidence 889999999887621 2345778888877469999999998874 7899999999999999999
Q ss_pred HHhhccC
Q 008491 553 VMSHLKS 559 (564)
Q Consensus 553 ~~~~i~~ 559 (564)
+.+.+++
T Consensus 534 ~~~~~~~ 540 (541)
T 1v25_A 534 YKNYYGG 540 (541)
T ss_dssp STTSSCC
T ss_pred HHHhhCC
Confidence 9887764
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-78 Score=635.41 Aligned_cols=502 Identities=23% Similarity=0.320 Sum_probs=334.9
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
+.+.+|.++|.++++++|+++|++++++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCch-----hhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhccc
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSD-----SWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYS 158 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (564)
++|+++.++.+++.++++++++++++++.... .....+ ....+....++..+..... ..........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 178 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSL-HDVNLSPEIILMLNHQATD-------FGLLDWIETP 178 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHH-HHTTCCCSEEEEETCCTTS-------EEHHHHHHSC
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHH-hhcccCcceEEEecCCccc-------cchhhhhhcc
Confidence 99999999999999999999999999987653 222222 2233334444444322111 0111111111
Q ss_pred CCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH--HHHHHHHh
Q 008491 159 LRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMV 236 (564)
Q Consensus 159 ~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~--~~~~~l~~ 236 (564)
...........++++++++|||||||.||+|+++|+++.+.+......+++.+++++++.+|++|.+++. .++.++..
T Consensus 179 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 179 AETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp CSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 1111112345689999999999999999999999999999999999999999999999999999999885 58899999
Q ss_pred CccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcE
Q 008491 237 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL 316 (564)
Q Consensus 237 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i 316 (564)
|+++++.+.+++..+++.|+++++|++.++|+.+..+++....... .+++||.+++||+++++++.+.+.+.+ ++++
T Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD--QIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH--HHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc--cCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 9999999999999999999999999999999999999988764443 568999999999999999999999998 8999
Q ss_pred EcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccC-CcceEEEeeCC-----CCCccEEEEe
Q 008491 317 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTR 390 (564)
Q Consensus 317 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~~~~-----~~~~Gel~v~ 390 (564)
++.||+||++..+....... .....++|+|+ ++++++++|++ .|+.|||+++
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~----------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 393 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSD----------------------EQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATR 393 (544)
T ss_dssp EEEEECTTSCEEECCTTSCH----------------------HHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred EeeeccccccceeecCCCch----------------------hhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEe
Confidence 99999999875433221100 00123589996 89999999976 6889999999
Q ss_pred cccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 391 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 391 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
|++++.||++++..+...++++|||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 394 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 473 (544)
T 3o83_A 394 GPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIV 473 (544)
T ss_dssp CTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------
T ss_pred cCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEecc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 550 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~ 550 (564)
++..++.++++|+..+. ..+.+++++++++..|+.|++|..++++ ++||+|++||++|++|+
T Consensus 474 ~~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~ 535 (544)
T 3o83_A 474 DEQFGEKSCAFIVSRNP-----------------ELKAVVLRRHLMELGIAQYKLPDQIKLI-ESLPLTAVGKVDKKQLR 535 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEEEeCCC-----------------CCCHHHHHHHHHhCCCCcccCCcEEEEe-ccCCCCCCCCCcHHHHH
Confidence 99889999999987653 2456778888887569999999998874 78999999999999999
Q ss_pred HHHHhh
Q 008491 551 REVMSH 556 (564)
Q Consensus 551 ~~~~~~ 556 (564)
+++.+.
T Consensus 536 ~~~~~~ 541 (544)
T 3o83_A 536 SILNTS 541 (544)
T ss_dssp ------
T ss_pred HHHhhc
Confidence 988754
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.1e-76 Score=614.26 Aligned_cols=486 Identities=26% Similarity=0.365 Sum_probs=407.5
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeC--CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCcee
Q 008491 7 AHICQCLSRIAAVKRNSVVTITG--NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIV 84 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~ 84 (564)
.|+.++|.++++++||++|+.+. ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 36889999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhhHHHHHhhcCCcEEEe--cCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCC
Q 008491 85 APLNYRWSFKEASRAITSIRPVMLVT--DESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSL 162 (564)
Q Consensus 85 v~l~~~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (564)
+|+++.++.+++.+++++++++++++ +......+.. ..+.+. ++..++. ..... .......
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~~~-~~~~~~~----------~~~~~--~~~~~~~ 144 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ----SGSGAR-IIFLGDL----------VRDGE--PYSYGPP 144 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH----HCCCCE-EEEGGGT----------EETTE--ECCCSCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh----ccccce-eEEecch----------hhcCc--ccccCCc
Confidence 99999999999999999999999999 6654332211 112222 1111100 00000 0000011
Q ss_pred CCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcC--CCCceEEEecCchhhhHH-HHHHHHHHhCcc
Q 008491 163 PFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGL-SSAMAMLMVGAC 239 (564)
Q Consensus 163 ~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~ 239 (564)
.......++++++++|||||||.||+|+++|+++.+.+......+++ .++++++...|++|.+++ ..++.++..|++
T Consensus 145 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp CCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred cCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 11133468999999999999999999999999999888888777888 788999999999999998 568899999999
Q ss_pred EEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcc
Q 008491 240 HVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISA 319 (564)
Q Consensus 240 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~ 319 (564)
+++.+.+++..+++.|+++++|+++++|+++..+.+..........+++||.+++|||++++++.+.+.+.+ ++.+++.
T Consensus 225 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 303 (504)
T 1t5h_X 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNI 303 (504)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeee
Confidence 999999999999999999999999999999999998763312223578999999999999999999999999 7899999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC--------CCCccEEEEe-
Q 008491 320 YGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTR- 390 (564)
Q Consensus 320 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~--------~~~~Gel~v~- 390 (564)
||+||++. +.... . . ..+++|.|.+++++++++++ .|+.|||+++
T Consensus 304 YG~TE~~~-~~~~~-~-~-----------------------~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~g 357 (504)
T 1t5h_X 304 YGTTEAMN-SLYMR-Q-P-----------------------KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357 (504)
T ss_dssp EEETTTEE-EEEEE-S-C-----------------------SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEEC
T ss_pred eccccccc-ccccc-C-C-----------------------CCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeC
Confidence 99999942 22211 0 0 22358999999999999864 4688999999
Q ss_pred cccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 391 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 391 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
|+.++.||++++..+...+ .+|||+|||+|++++||.++++||.+|+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 358 g~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 436 (504)
T 1t5h_X 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436 (504)
T ss_dssp CTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEee
Confidence 8999999999998888777 578999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 550 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~ 550 (564)
++..++.++++|++.++ ...+.+++++++++..|+.|++|+.++++ ++||+|++||++|++|+
T Consensus 437 ~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~ 499 (504)
T 1t5h_X 437 DQRWGQSVTACVVPRLG----------------ETLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALNKVLRRQLV 499 (504)
T ss_dssp CSSSSEEEEEEEEECTT----------------CCCCHHHHHHHHHTSSCCGGGSCSEEEEC-SCCCBCTTSCBCHHHHH
T ss_pred cCCCCcEEEEEEEecCC----------------cCcCHHHHHHHHhhccCcccccceEEEEh-hhCCCCCCCCEeHHHHH
Confidence 99889999999998765 12456889999986469999999998875 78999999999999999
Q ss_pred HHHH
Q 008491 551 REVM 554 (564)
Q Consensus 551 ~~~~ 554 (564)
+++.
T Consensus 500 ~~~~ 503 (504)
T 1t5h_X 500 QQVS 503 (504)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9875
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.2e-76 Score=630.65 Aligned_cols=516 Identities=20% Similarity=0.226 Sum_probs=418.3
Q ss_pred hhHHHHHHHHHhhcCCeEEEEe------CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhh
Q 008491 7 AHICQCLSRIAAVKRNSVVTIT------GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFI 80 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~ 80 (564)
+++.++|+++++++||++|+++ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 4678899999999999999998 3478999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCChhhHHHHHhhcCCcEEEecCCchh---------hHHHHhhh-ccCcceeeeecCCCCcccc-cccccc
Q 008491 81 GGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDS---------WYLELQHT-AIPSLRWHVSLGSSSSDFV-NKRDML 149 (564)
Q Consensus 81 G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (564)
|++++|+++.++.+++.+++++++++++|+++.... .+...... ..+.+..++.++....... ......
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL 235 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence 999999999999999999999999999999876432 12222111 1123444444432211100 001112
Q ss_pred chhhhhcccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHH-HHHHHhcCCCCceEEEecCchhhhHH-
Q 008491 150 TADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL- 227 (564)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~- 227 (564)
.++++..... .........++++++|+|||||||.||||+++|++++.... .....+++.++|++++..|++|+.++
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 314 (652)
T 1pg4_A 236 WWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314 (652)
T ss_dssp EHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred eHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechH
Confidence 2333322211 11122334679999999999999999999999999876654 44556889999999999999999998
Q ss_pred HHHHHHHHhCccEEEccC----CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHH
Q 008491 228 SSAMAMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSEL 303 (564)
Q Consensus 228 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~ 303 (564)
..++.+++.|+++++.+. .++..+++.|+++++|+++++|+.+..+.+..........+++||.+++|||++++++
T Consensus 315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 394 (652)
T 1pg4_A 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA 394 (652)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHH
Confidence 568899999999999875 5899999999999999999999999999877543222346789999999999999999
Q ss_pred HHHHHhhCCC---CcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC
Q 008491 304 MKEATNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG 380 (564)
Q Consensus 304 ~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~ 380 (564)
++++.+.+ + +++++.||+||+++.++....... ....+++|+|+++++++++|++
T Consensus 395 ~~~~~~~~-g~~~~~i~~~YG~TE~~~~~~~~~~~~~---------------------~~~~~s~G~p~~g~~v~i~d~~ 452 (652)
T 1pg4_A 395 WEWYWKKI-GKEKCPVVDTWWQTETGGFMITPLPGAI---------------------ELKAGSATRPFFGVQPALVDNE 452 (652)
T ss_dssp HHHHHHHT-TTTCSCEEEEBCCGGGSSCSBCCCTTTC---------------------CBCTTCCBSBCTTCCEEEECTT
T ss_pred HHHHHHHh-CCCCCcEEccccCcccccceecCCCCCc---------------------CccCCccccCcCCCeEEEECCC
Confidence 99999988 5 899999999999876554321100 0133479999999999999876
Q ss_pred -----CCCccEEEEec--ccchhhhccCCCCCCccc--CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHH
Q 008491 381 -----SSHVGRILTRG--AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 451 (564)
Q Consensus 381 -----~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 451 (564)
.|+.|||+++| |+++.||++++..+...+ ..+|||+|||+|++++||.++++||.||+||++|++|+|.+|
T Consensus 453 g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 453 GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 46789999999 799999999986654443 247899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEE
Q 008491 452 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVL 531 (564)
Q Consensus 452 e~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~ 531 (564)
|++|.+||.|.+++|++.+++..++.++++|++.++.. ......++|++++++ .|+++++|..+++
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~P~~i~~ 598 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-------------PSPELYAEVRNWVRK-EIGPLATPDVLHW 598 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-------------CCHHHHHHHHHHHHH-HTCGGGCCSEEEE
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC-------------CCHHHHHHHHHHHHH-hCCCCcCCeEEEE
Confidence 99999999999999999999888999999999887521 001235789999998 7999999999887
Q ss_pred ecCCCCCCCCCCcchHHHHHHHHhhccCC
Q 008491 532 WRKPFPLTSTGKIRRDEVRREVMSHLKSL 560 (564)
Q Consensus 532 ~~~~lP~t~~GK~~R~~l~~~~~~~i~~~ 560 (564)
++.||+|++||++|++|++.+..+++.+
T Consensus 599 -v~~lP~T~sGKi~R~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 599 -TDSLPKTRSGKIMRRILRKIAAGDTSNL 626 (652)
T ss_dssp -CSCCCBCTTSCBCHHHHHHHHHTC----
T ss_pred -cCCCCCCCCccchHHHHHHHHhCCCCCC
Confidence 4889999999999999999999876443
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.3e-77 Score=624.55 Aligned_cols=495 Identities=25% Similarity=0.398 Sum_probs=331.7
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
+...||.++|+++++++||++|+.++++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (564)
++|+++.++.+++.++++++++++++++......+.... ...+.+..++..++...... ...........
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 152 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSGPFA---------PFKDLASDTPF 152 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCSSCE---------EGGGTCCCSCC
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCcChh---------hHhhccCCCCC
Confidence 999999999999999999999999999988766543332 34455555555543221111 11110111112
Q ss_pred CCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEc
Q 008491 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 164 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
......++|+++++|||||||.||+|+++|+++.+.+......+++.++++++..+|++|.+++...+.+++.|++.++.
T Consensus 153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 23345789999999999999999999999999999999999999999999999999999999998887777777777777
Q ss_pred cCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 244 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 244 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
..+++..+++.|+++++|++.++|+.+..+++... ...++++|.++.+|++ +..+.+.+.++++++++.||+|
T Consensus 233 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~T 305 (509)
T 3ivr_A 233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQS 305 (509)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEG
T ss_pred cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcc
Confidence 78899999999999999999999999999988752 2356789999999987 8899999999899999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhhh
Q 008491 324 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 398 (564)
Q Consensus 324 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~gy 398 (564)
|++++++....... ..++|+|+++++++++|++ .|+.|||+++|++++.||
T Consensus 306 E~~~~~~~~~~~~~------------------------~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY 361 (509)
T 3ivr_A 306 ETSGLSTFAPYRDR------------------------PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGY 361 (509)
T ss_dssp GGTEEEEEEEGGGS------------------------TTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEE
T ss_pred ccccccccCccccC------------------------CCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccc
Confidence 99977665543211 1138999999999999976 688999999999999999
Q ss_pred ccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeec--cceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccc
Q 008491 399 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR--NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 476 (564)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 476 (564)
++++..+...+. +|||+|||+|++++||++++.||. +|+||++|++|+|.+||++|.+||+|.+++|++.+++..++
T Consensus 362 ~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~ 440 (509)
T 3ivr_A 362 WNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSE 440 (509)
T ss_dssp TTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC-------------------------------------------
T ss_pred cCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCc
Confidence 999988888774 789999999999999999999999 99999999999999999999999999999999999988899
Q ss_pred eEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHHhh
Q 008491 477 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 556 (564)
Q Consensus 477 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~~~ 556 (564)
.++++|++.++ ...+.++|++++++ .|+.|++|..++++ ++||+|++||++|++|++++.+.
T Consensus 441 ~~~a~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 441 AIKAVCVCKPG----------------ESIAADALAEFVAS-LIARYKKPKHVVFV-EALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEeCCC----------------CCCCHHHHHHHHHh-hCcccCCCcEEEEe-cCCCCCCCCCccHHHHHHHHhhc
Confidence 99999998776 23557889999998 79999999988874 88999999999999999998875
Q ss_pred cc
Q 008491 557 LK 558 (564)
Q Consensus 557 i~ 558 (564)
-+
T Consensus 503 ~~ 504 (509)
T 3ivr_A 503 GH 504 (509)
T ss_dssp --
T ss_pred cc
Confidence 43
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.6e-77 Score=618.82 Aligned_cols=493 Identities=20% Similarity=0.245 Sum_probs=413.8
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeee
Q 008491 7 AHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAP 86 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 86 (564)
++|.+.|+++++++|+++|+.+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhh-hcccCCCCCCC
Q 008491 87 LNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADIL-KGYSLRSLPFT 165 (564)
Q Consensus 87 l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 165 (564)
+++.++.+++.++++.+++++++++...... ..+ .. +...+ ..... ...........
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~-------~~~-~~-~~~~~-------------~~~~~~~~~~~~~~~~~ 138 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT-------DLP-VR-IVSED-------------NLKDIFFTHKGNTPNPE 138 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS-------CCS-SE-EEETH-------------HHHHHHHHTTTCCCCGG
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc-------ccc-cc-eechh-------------hhhhhcccccccCCCcc
Confidence 9999999999999999999999998543210 000 00 00000 00000 00011111122
Q ss_pred CCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 166 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 166 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
....++++++++|||||||.||+|+++|+++.+.+......+++.++++++...|++|..++..++.+++.|+++++.+.
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 34578999999999999999999999999999999999999999999999999999999999889999999999999886
Q ss_pred ---CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccc
Q 008491 246 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322 (564)
Q Consensus 246 ---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~ 322 (564)
.++..+++.++++++|++.++|+++..++....... ..++++|.+++||+++++++.+.+.+.|+++++++.||+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 296 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE--SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGP 296 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST--TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc--hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCccc
Confidence 689999999999999999999999998876654333 367899999999999999999999999989999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhh
Q 008491 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 397 (564)
Q Consensus 323 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~g 397 (564)
||+++.++......... ......++|.|+++++++++|++ .|+.|||+++|++++.|
T Consensus 297 TE~~~~~~~~~~~~~~~------------------~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~G 358 (512)
T 3fce_A 297 TEATVAVTGIHVTEEVL------------------DQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVG 358 (512)
T ss_dssp GGGSSCSEEEECCHHHH------------------HHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSC
T ss_pred ChhhhheeeEEeccccc------------------cccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChh
Confidence 99987766443211000 00123359999999999999876 68899999999999999
Q ss_pred hccCCCCCCccc---CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcc
Q 008491 398 YWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 474 (564)
Q Consensus 398 y~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 474 (564)
|++++..+...+ ++++||+|||+|++ +||.+++.||.+|+||.+|++|+|.+||++|.++|+|.+++|++.++...
T Consensus 359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 437 (512)
T 3fce_A 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK 437 (512)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence 999988887765 56889999999999 79999999999999999999999999999999999999999999998888
Q ss_pred cceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHH
Q 008491 475 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 554 (564)
Q Consensus 475 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~ 554 (564)
++.++++|++.+.... ......+++++++++ .|+.|++|..+++ +++||+|++||++|++|++.+.
T Consensus 438 ~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~-~~~lP~t~~GKi~R~~L~~~~~ 503 (512)
T 3fce_A 438 YDYLLAVVVPGEHSFE------------KEFKLTSAIKKELNE-RLPNYMIPRKFMY-QSSIPMTPNGKVDRKKLLSEVT 503 (512)
T ss_dssp EEEEEEEEEECSCCCS------------SHHHHHHHHHHHHHT-TSCGGGSCSEEEE-CSCCCBCTTSSBCHHHHHHHHH
T ss_pred ceEEEEEEecCCcccc------------chhhhHHHHHHHHHh-hCchhcCCeEEEE-ecccCCCCCcChHHHHHHhhhh
Confidence 8899999998765210 011235689999998 7999999999887 5889999999999999999987
Q ss_pred hh
Q 008491 555 SH 556 (564)
Q Consensus 555 ~~ 556 (564)
+.
T Consensus 504 ~~ 505 (512)
T 3fce_A 504 AL 505 (512)
T ss_dssp C-
T ss_pred hc
Confidence 54
No 14
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.1e-77 Score=617.67 Aligned_cols=494 Identities=23% Similarity=0.303 Sum_probs=392.4
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeee
Q 008491 7 AHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAP 86 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 86 (564)
+||.++|.++++++|+++|+.++++++||+||.++++++|++|++. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 3678899999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccc----hhhhhcccCCCC
Q 008491 87 LNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLT----ADILKGYSLRSL 162 (564)
Q Consensus 87 l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 162 (564)
+++.++.+++.++++++++++++++........... ....+........... ......... .+..........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV--SLDDIEFAGRDITTNG-LLDNTMGIQYDTSNETVVPKESPSN 154 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE--ETTC---------------------------------CCHHH
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccccccc--ccccceeeeeeccccc-ccccccccccccchhhccccCCccc
Confidence 999999999999999999999999977544321110 0111111100000000 000000000 000000000001
Q ss_pred CCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEE
Q 008491 163 PFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVF 242 (564)
Q Consensus 163 ~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~ 242 (564)
.......++|+++++|||||||.||+|.++|+++.+.+......+++.++++++...|++|.+++..++.+++.|+++++
T Consensus 155 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~ 234 (501)
T 3ipl_A 155 ILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRI 234 (501)
T ss_dssp HTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred ccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEe
Confidence 12234578999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccc
Q 008491 243 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322 (564)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~ 322 (564)
.+.+++..+++.|+++++|++.++|+.+..+.+..... ..++|.+++|||++++++.+.+.+. ++++++.||+
T Consensus 235 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~ 307 (501)
T 3ipl_A 235 VDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAKLSATMIETALQY--NLPIYNSFGM 307 (501)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccc
Confidence 99999999999999999999999999999998775332 2289999999999999999999884 8999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCCCCCccEEEEecccchhhhccCC
Q 008491 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 402 (564)
Q Consensus 323 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~ 402 (564)
||+++.++........ ....++|.|+++++++++|++.++.|||+++|+.++.||++++
T Consensus 308 TE~~~~~~~~~~~~~~---------------------~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~ 366 (501)
T 3ipl_A 308 TETCSQFLTATPEMLH---------------------ARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPT 366 (501)
T ss_dssp GGGTEEEEEECHHHHH---------------------HCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBST
T ss_pred cccccceeecCccccc---------------------cCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcCh
Confidence 9998655443221100 0223599999999999999999999999999999999999999
Q ss_pred CCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccceEEEEE
Q 008491 403 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV 482 (564)
Q Consensus 403 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 482 (564)
..+.. + .+|||+|||+|++++||.++++||.+|+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++
T Consensus 367 ~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v 444 (501)
T 3ipl_A 367 DLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYF 444 (501)
T ss_dssp TCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEE
Confidence 88887 4 578999999999999999999999999999999999999999999999999999999999998899999998
Q ss_pred EeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHHhh
Q 008491 483 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 556 (564)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~~~ 556 (564)
+.... .+.++|++++++ .|+.|++|..+++ +++||+|++||++|++|++...++
T Consensus 445 ~~~~~------------------~~~~~l~~~l~~-~L~~~~~P~~i~~-v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 445 VSESD------------------ISKAQLIAYLSK-HLAKYKVPKHFEK-VDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEE-CSSCC-------------------
T ss_pred EeCCC------------------CCHHHHHHHHHh-hCccccCCCEEEE-ecccCCCCCCCEeHHHHhhccccc
Confidence 86544 557899999998 7999999999887 488999999999999999987764
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.7e-76 Score=613.51 Aligned_cols=492 Identities=18% Similarity=0.213 Sum_probs=417.0
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEcCCcHHHHHHHHHHHhhCceee
Q 008491 7 AHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEI-GLRSGDIVAISALNSEWYLEWILAVAFIGGIVA 85 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v 85 (564)
++|.+.|+++|+++|+++|+.+.++++||+||.++++++|++|++. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 3789999999999999999999999999999999999999999885 888999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCCCC
Q 008491 86 PLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFT 165 (564)
Q Consensus 86 ~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (564)
|+++.++.+++.++++++++++++++...... ..... ...+..+.+...........
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-------~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 137 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID-------AVGQQ----------------IQTVSAEELLENEGGSVSQD 137 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT-------CCCCS----------------SCEEEHHHHHTSCSCCCCGG
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch-------hcccc----------------cceecHhhhhccccCCcccc
Confidence 99999999999999999999999997653210 00000 00111222221111112223
Q ss_pred CCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 166 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 166 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
....++++++++|||||||.||+|+++|+++.+.+.+....+++.++++++...|++|..++..++.++..|+++++.+.
T Consensus 138 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 138 QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp GSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 34578899999999999999999999999999999999899999999999999999999999889999999999999876
Q ss_pred ---CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccc
Q 008491 246 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322 (564)
Q Consensus 246 ---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~ 322 (564)
.++..+++.|+++++|++.++|+++..++....... ..++++|.++++|+++++++.+.+.+.|+++++++.||+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ--DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc--ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 689999999999999999999999999887644333 357899999999999999999999999989999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhh
Q 008491 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 397 (564)
Q Consensus 323 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~g 397 (564)
||+++.++......... ......++|.|+++++++++|++ .|+.|||+++|++++.|
T Consensus 296 TE~~~~~~~~~~~~~~~------------------~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~G 357 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVI------------------SRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357 (511)
T ss_dssp GGGSSCSEEEEECHHHH------------------TTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCC
T ss_pred chheeeeeEEecccccc------------------ccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChh
Confidence 99987766543221100 00123469999999999999976 68889999999999999
Q ss_pred hccCCCCCCccc---CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcc
Q 008491 398 YWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 474 (564)
Q Consensus 398 y~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 474 (564)
|++++..+...+ ++.+||+|||+|++ +||.++++||.+|+||.+|++|+|.+||++|.+||.|.+++|++.+++..
T Consensus 358 Y~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp BTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSS
T ss_pred hCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCC
Confidence 999988887766 34448999999999 59999999999999999999999999999999999999999999998888
Q ss_pred cceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHH
Q 008491 475 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 554 (564)
Q Consensus 475 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~ 554 (564)
++.+++++++.++... ......+++++++++ .|+.|++|..+++ +++||+|++||++|++|++.+.
T Consensus 437 ~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~-v~~lP~t~~GKi~R~~L~~~~~ 502 (511)
T 3e7w_A 437 VEYLIAAIVPEEHEFE------------KEFQLTSAIKKELAA-SLPAYMIPRKFIY-QDHIQMTANGKIDRKRIGEEVL 502 (511)
T ss_dssp CCEEEEEEEECCCCCS------------SHHHHHHHHHHHHHH-HSCGGGSCSEEEE-CSCCCBCTTSCBCHHHHHHHHH
T ss_pred ceEEEEEEEecccccc------------chhhHHHHHHHHHHh-hCchhhCCeeEEE-eccCCCCCCcCccHHHHHhHHh
Confidence 8999999998775210 011235789999998 7999999999887 5889999999999999999987
Q ss_pred hh
Q 008491 555 SH 556 (564)
Q Consensus 555 ~~ 556 (564)
+.
T Consensus 503 ~~ 504 (511)
T 3e7w_A 503 VR 504 (511)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 16
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.7e-76 Score=618.91 Aligned_cols=499 Identities=20% Similarity=0.246 Sum_probs=397.1
Q ss_pred HHHHHHHHHhhcCCeEEEEe-----CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 9 ICQCLSRIAAVKRNSVVTIT-----GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 9 l~~~l~~~a~~~p~~~a~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
..++|+++|+++|+++|+.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 58 ~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav 137 (580)
T 3etc_A 58 AYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAI 137 (580)
T ss_dssp HHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEE
Confidence 34999999999999999997 3478999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCch--hhHHHHhhhccCcc-eeeeecCCCCccccccccccchhhhhcccCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSD--SWYLELQHTAIPSL-RWHVSLGSSSSDFVNKRDMLTADILKGYSLR 160 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (564)
++|+++.++.+++.++++++++++++++.+.. ..+..... ..+.+ ..++..+..... ....+.........
T Consensus 138 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 211 (580)
T 3etc_A 138 AVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDVLE-----GWIDFRKELEESSP 211 (580)
T ss_dssp EEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSCCT-----TCEEHHHHHHHSCS
T ss_pred EEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcccc-----ccccHHHHHhhCCc
Confidence 99999999999999999999999999988754 44433322 22332 233333322110 11122222111111
Q ss_pred CCC-C--CCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH-HHHHHHHh
Q 008491 161 SLP-F--THSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMV 236 (564)
Q Consensus 161 ~~~-~--~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~ 236 (564)
... + .....++|+++++|||||||.||+|.++|.++...+.......++.++++++...|+.|..+++ .++.++..
T Consensus 212 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 291 (580)
T 3etc_A 212 IFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA 291 (580)
T ss_dssp CCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHT
T ss_pred ccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhC
Confidence 111 1 1245789999999999999999999999999988887777777888999999999999988876 46788999
Q ss_pred CccEEEc--cCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCC
Q 008491 237 GACHVFI--PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA 314 (564)
Q Consensus 237 G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~ 314 (564)
|+++++. ..+++..+++.|+++++|+++++|+.+..|.+.. .....+++||.+++|||++++++.+++.+.+ ++
T Consensus 292 G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~ 367 (580)
T 3etc_A 292 GCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GI 367 (580)
T ss_dssp TCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccCCCccceEEEEccCCCCHHHHHHHHHHh-CC
Confidence 9999887 4589999999999999999999999999987641 2223578999999999999999999999988 89
Q ss_pred cEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEE
Q 008491 315 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILT 389 (564)
Q Consensus 315 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v 389 (564)
++++.||+||++..++...... ...+++|+|+|+++++++|++ .|+.|||++
T Consensus 368 ~i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v 424 (580)
T 3etc_A 368 KLMEGFGQTETVVTIATFPWME-----------------------PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI 424 (580)
T ss_dssp CCEEEECCTTSSCCEECCTTSC-----------------------CCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred eEecccccccccceeecCCCCC-----------------------CCCCccccCCCCCEEEEECCCCCCCCCCCceEEEE
Confidence 9999999999986655433211 133469999999999999976 688999999
Q ss_pred ec-----ccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEE
Q 008491 390 RG-----AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 464 (564)
Q Consensus 390 ~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~ 464 (564)
+| ++++.||++++..+...+. +|||+|||+|++++||.++++||.||+||.+|++|+|.+||++|.+||+|.++
T Consensus 425 ~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a 503 (580)
T 3etc_A 425 NTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLEC 503 (580)
T ss_dssp ECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred ecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeE
Confidence 97 7899999999998888874 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCc
Q 008491 465 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI 544 (564)
Q Consensus 465 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~ 544 (564)
+|++.+++..++.++++|++.++... .....++|++++++ .|++|++|+.++++ ++||+|++||+
T Consensus 504 ~Vvg~~~~~~g~~~~a~vv~~~~~~~-------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~sGKi 568 (580)
T 3etc_A 504 AITGVPDPVRGQVIKATIVLTKDYTP-------------SDSLKNELQDHVKN-VTAPYKYPRIIEFV-PELPKTISGKI 568 (580)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTCCC-------------CHHHHHHHHHHHHH-HSCGGGCCSEEEEE-CC---------
T ss_pred EEEeeeccCCCcEEEEEEEECCCCCC-------------CHHHHHHHHHHHHh-hCCCccCCeEEEEe-CCCCCCCCcCC
Confidence 99999999999999999998876210 12346789999998 79999999998874 78999999999
Q ss_pred chHHHHHHHHhh
Q 008491 545 RRDEVRREVMSH 556 (564)
Q Consensus 545 ~R~~l~~~~~~~ 556 (564)
+|++|+++++++
T Consensus 569 ~R~~Lr~~~~~q 580 (580)
T 3etc_A 569 RRVEIRDKDQSQ 580 (580)
T ss_dssp ------------
T ss_pred cHHHHHhHhhcC
Confidence 999999988753
No 17
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.1e-76 Score=624.29 Aligned_cols=502 Identities=22% Similarity=0.306 Sum_probs=428.5
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
+.+.++.++|.++++ ||++|++++++++||+||.++++++|++|+++|+++|++|+++++|++++++++|||+++|++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 455789999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCch-----hhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhccc
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSD-----SWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYS 158 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (564)
++|+++.++.+++.++++.+++++++++.... ...... ....+....+...++.... .........
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 172 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTF-VTEHSSIRVVQLLNDSGEH--------NLQDAINHP 172 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHH-HHHSTTCCEEEEETCCSTT--------BHHHHHHSC
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHH-hhcCCccceeeeccccccc--------chhhhhccc
Confidence 99999999999999999999999999987654 111111 1223334444333322110 111111111
Q ss_pred CCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH--HHHHHHHh
Q 008491 159 LRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS--SAMAMLMV 236 (564)
Q Consensus 159 ~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~--~~~~~l~~ 236 (564)
..........+++++|++|||||||.||+|+++|+++.+.+......+++.+++++++..|++|.+++. .++.+++.
T Consensus 173 -~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~ 251 (617)
T 3rg2_A 173 -AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251 (617)
T ss_dssp -CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHH
T ss_pred -ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHc
Confidence 111122344679999999999999999999999999999999999999999999999999999998875 58899999
Q ss_pred CccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcE
Q 008491 237 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL 316 (564)
Q Consensus 237 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i 316 (564)
|+++++.+..++..+++.|+++++|++.++|+.+..+.+..........++++|.+++|||++++++.+++.+.+ ++++
T Consensus 252 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~ 330 (617)
T 3rg2_A 252 GGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQL 330 (617)
T ss_dssp TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcE
Confidence 999999998999999999999999999999999999998876655444688999999999999999999999998 8999
Q ss_pred EcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccC-CcceEEEeeCC-----CCCccEEEEe
Q 008491 317 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVGRILTR 390 (564)
Q Consensus 317 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~~~~-----~~~~Gel~v~ 390 (564)
++.||+||++..++....... ....++|.|+ ++++++++|++ .|+.|||+++
T Consensus 331 ~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~ 388 (617)
T 3rg2_A 331 QQVFGMAEGLVNYTRLDDSAE----------------------KIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388 (617)
T ss_dssp EEEEEETTEEEEECCTTSCHH----------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred EEEeccCcceeecccCCCccc----------------------ccccCCCccCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999854432211000 0123589997 78899999876 6889999999
Q ss_pred cccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 391 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 391 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
|++++.||++++..+...|.+++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 389 G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~ 468 (617)
T 3rg2_A 389 GPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSME 468 (617)
T ss_dssp CSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 550 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~ 550 (564)
++..++.+++++++.+. .+.++++++++++.|+.|++|..++.+ ++||+|++||+||++|+
T Consensus 469 ~~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~~~lp~~~vP~~~~~v-~~lP~t~~GKidR~~L~ 529 (617)
T 3rg2_A 469 DELMGEKSCAYLVVKEP------------------LRAVQVRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVDKKQLR 529 (617)
T ss_dssp ETTTEEEEEEEEEESSC------------------CCHHHHHHHHHTTTCCGGGSCSEEEEC-SCCCBCTTSSBCHHHHH
T ss_pred CcccCeeEEEEEEeCCC------------------CCHHHHHHHHHhCCCccccCCcEEEEe-cccCCCCCCCCcHHHHH
Confidence 88888899999988764 456789999987569999999998874 88999999999999999
Q ss_pred HHHHhhccC
Q 008491 551 REVMSHLKS 559 (564)
Q Consensus 551 ~~~~~~i~~ 559 (564)
+.+.+....
T Consensus 530 ~~~~~~~~~ 538 (617)
T 3rg2_A 530 QWLASRASA 538 (617)
T ss_dssp HHHHHHHHH
T ss_pred HHHhccccc
Confidence 998876543
No 18
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4.3e-76 Score=623.04 Aligned_cols=479 Identities=18% Similarity=0.253 Sum_probs=394.3
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
+...++.+.|.++++++||++|+.++++++||+||.++++++|++|+++|+++|++|+++++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (564)
++|++|.++.+++.++++++++++++++....... ....... ..... ......
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~~-----------------~~~~~--~~~~~~ 156 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCVP-----------------VRHLP--AAPASV 156 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEEE-----------------GGGCC--CCCCCS
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCceee-----------------eccCC--cCCccc
Confidence 99999999999999999999999999765432110 0000000 00000 000111
Q ss_pred CCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEc
Q 008491 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 164 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
......+++++|++|||||||.||||+++|+++.+.+.. ...+++.++++++...|++|..++..++.+++.|+++++.
T Consensus 157 ~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp SCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred cCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 122346899999999999999999999999999876655 4567788999999999999999999999999999999996
Q ss_pred c--CCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccc
Q 008491 244 P--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYG 321 (564)
Q Consensus 244 ~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG 321 (564)
+ .+++..+++.|+++++|++.++|+++..+.+... ..+++||.+++|||+++++..+++.+.++++++++.||
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 310 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG 310 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence 5 4789999999999999999999999999986421 24678999999999999999999988887999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecccch
Q 008491 322 MTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVM 395 (564)
Q Consensus 322 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~~~~ 395 (564)
+||++.+++......... .....++|+|+++++++++|++ .|+.|||+++|++++
T Consensus 311 ~TE~~~~~~~~~~~~~~~-------------------~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~ 371 (620)
T 4dg8_A 311 PTENTTFTCCHVVTDDDL-------------------EEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLA 371 (620)
T ss_dssp CGGGCSCSEEEECCTGGG-------------------GSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCC
T ss_pred hhhhhhheEEEecccccc-------------------CCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccc
Confidence 999997766543321110 0123469999999999999975 577899999999999
Q ss_pred hhhccCCCCCCcccCCC-------ceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEe
Q 008491 396 LRYWDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 468 (564)
Q Consensus 396 ~gy~~~~~~~~~~~~~~-------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~ 468 (564)
.||++++..+...|..+ +||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++
T Consensus 372 ~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~ 451 (620)
T 4dg8_A 372 QGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLV 451 (620)
T ss_dssp SEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEE
T ss_pred cccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEE
Confidence 99999998887776432 79999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHH
Q 008491 469 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 548 (564)
Q Consensus 469 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~ 548 (564)
.++...++.+++++. ... .+++++++ .||.|++|..++.+ ++||+|++||++|++
T Consensus 452 ~~~~~~~~lv~~~~~-~~~----------------------~~~~~l~~-~Lp~y~~P~~~~~v-~~lP~t~~GKidR~~ 506 (620)
T 4dg8_A 452 RERNGVKQLLCAWTG-KAD----------------------ASPQALLR-QLPTWQRPHACVRV-EALPLTAHGKLDRAA 506 (620)
T ss_dssp EEETTEEEEEEEEEE-CTT----------------------CCCHHHHH-HSCGGGSCSEEEEC-SSCCCC----CCHHH
T ss_pred EeCCCceEEEEEEec-ChH----------------------HHHHHHHH-hChhhcCCcEEEEE-CcCCCCcccCHhHHH
Confidence 887765555555443 221 12233445 69999999998874 889999999999999
Q ss_pred HHHHHHhhccC
Q 008491 549 VRREVMSHLKS 559 (564)
Q Consensus 549 l~~~~~~~i~~ 559 (564)
|++.+.+.++.
T Consensus 507 L~~~~~~~~~~ 517 (620)
T 4dg8_A 507 LLRRLEEPLER 517 (620)
T ss_dssp HHHHTCSCC--
T ss_pred Hhhcccccccc
Confidence 99988765543
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.3e-76 Score=616.42 Aligned_cols=476 Identities=22% Similarity=0.272 Sum_probs=401.2
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceee
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVA 85 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v 85 (564)
..++.++|.++++++|+++|+.+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCCCC
Q 008491 86 PLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFT 165 (564)
Q Consensus 86 ~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (564)
|+++.++.+++.+++++++++++|++......+..+ .....+...+... .... ......
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------~~~~--~~~~~~ 176 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI-----QFNGQVEIFEEDT--------------IKIR--EGTNLH 176 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS-----CCCSEEEECCCST--------------TTTS--CCSCCC
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc-----cccCceeeecchh--------------hccc--cCccCC
Confidence 999999999999999999999999987654332211 1111111111100 0000 001112
Q ss_pred CCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 166 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 166 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
....++|+++++|||||||.||+|+++|+++.+.+......+++.++++++...|++|..+++.++.+++.|+++++.+.
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 23467899999999999999999999999999888888888889999999999999999999888999999999999876
Q ss_pred ---CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccc
Q 008491 246 ---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322 (564)
Q Consensus 246 ---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~ 322 (564)
.++..+++.|+++++|++.++|+++..+.. ..++++|.+++||+++++++.+.+.+ .+++++.||+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~ 325 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHLDP--------ERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGP 325 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------TTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECC
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--------cccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECc
Confidence 689999999999999999999999877642 13578999999999999999999987 4789999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhh
Q 008491 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLR 397 (564)
Q Consensus 323 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~g 397 (564)
||++..++......... ....++|+|+++++++++|++ .|+.|||+++|++++.|
T Consensus 326 TE~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 326 TETTICATTWVATKETI--------------------GHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARG 385 (563)
T ss_dssp GGGSSCSEEEECCSSCC--------------------CSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred CHHhHhheeeecccccC--------------------CCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChh
Confidence 99987665543221100 023469999999999999876 68899999999999999
Q ss_pred hccCCCCCCcccC------CCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeec
Q 008491 398 YWDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 471 (564)
Q Consensus 398 y~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~ 471 (564)
|+++++.+...|. +++||+|||+|++++||+++++||.+|+||.+|++|+|.+||++|.+||+|.+++|++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999877766552 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 008491 472 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551 (564)
Q Consensus 472 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~ 551 (564)
+..++.++++|+.... .+.++|++++++ .|+.|++|..+++ +++||+|++||++|++|++
T Consensus 466 ~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~-~L~~y~~P~~i~~-v~~lP~t~~GKi~r~~L~~ 525 (563)
T 1amu_A 466 HQEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQ-LDKMPLTSNGKIDRKQLPE 525 (563)
T ss_dssp TTSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEE-CSSCCBCTTSSBCGGGSCC
T ss_pred CCCCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hCchhhCCcEEEE-ecccCCCCCcChhHHhcCC
Confidence 8888899999987643 456889999998 7999999999887 4889999999999999986
Q ss_pred HH
Q 008491 552 EV 553 (564)
Q Consensus 552 ~~ 553 (564)
..
T Consensus 526 ~~ 527 (563)
T 1amu_A 526 PD 527 (563)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6.9e-77 Score=626.60 Aligned_cols=480 Identities=23% Similarity=0.270 Sum_probs=318.4
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceee
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVA 85 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v 85 (564)
..++.++|+++++++||++|+.+.++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYT 153 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCCCC
Q 008491 86 PLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFT 165 (564)
Q Consensus 86 ~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (564)
|+++.++.+++.++++++++++++++...... +.....+...+... .........
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~-----------------~~~~~~~~~ 208 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRPLSGR--------LTGTTTLYVEDEAA-----------------SDAPAGNLA 208 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS--------SCSSEEEECCC------------------------CCCCC
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecchhhhc--------ccCCcceeeecccc-----------------ccccccccC
Confidence 99999999999999999999999998764322 12222221111100 000111122
Q ss_pred CCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 166 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 166 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
....++|+++++|||||||.||+|+++|+++.+.+.. ...+++.++++++...|++|..+...++.+++.|+++++.+.
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 3457899999999999999999999999998766544 345577889999999999998888888999999999999874
Q ss_pred --CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 246 --FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 246 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
+++..+++.|+++++|++.++|+++..+.+... ..+++||.+++|||+++++..+++.+.++++++++.||+|
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~T 362 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPA 362 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCG
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechh
Confidence 789999999999999999999999999987643 2467899999999999999999999998899999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhhh
Q 008491 324 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 398 (564)
Q Consensus 324 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~gy 398 (564)
|++++++......... .....++|+|+++++++++|++ .|+.|||+++|++++.||
T Consensus 363 E~~~~~~~~~~~~~~~-------------------~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY 423 (570)
T 4gr5_A 363 ESMGFTTHHAVVAGDL-------------------SGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGY 423 (570)
T ss_dssp GGCSCSEEEECCGGGT-------------------TSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred hheeeeeeeeeccccc-------------------CCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhc
Confidence 9987666543221110 0122359999999999999976 688899999999999999
Q ss_pred ccCCCCCCcccC--------CCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 399 WDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 399 ~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
++++..+...|. +++||+|||+|++++||.++++||.+|+||.+|++|+|.+||++|.+||+|.+++|++.+
T Consensus 424 ~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 503 (570)
T 4gr5_A 424 VSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQD 503 (570)
T ss_dssp TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------
T ss_pred CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEee
Confidence 999887776653 458999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 550 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~ 550 (564)
++..++.++++|++.+.. ...+.++|++++++ .|+.|++|..+++ +++||+|++||++|++|+
T Consensus 504 ~~~~~~~~~a~vv~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~-v~~lP~t~~GKi~R~~L~ 566 (570)
T 4gr5_A 504 SRLGDKQLVAYVVAERAD---------------APPDAAELRRHVAE-ALPAYMVPVECVP-VDELPRTPNGKLDRRALT 566 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEEEecCCC---------------CCcCHHHHHHHHHh-hCccccCCcEEEE-cccCCCCCCcCcchHhhh
Confidence 888888999999876541 22457889999998 7999999999887 488999999999999998
Q ss_pred HH
Q 008491 551 RE 552 (564)
Q Consensus 551 ~~ 552 (564)
+.
T Consensus 567 ~~ 568 (570)
T 4gr5_A 567 GS 568 (570)
T ss_dssp --
T ss_pred cc
Confidence 74
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.6e-75 Score=621.35 Aligned_cols=523 Identities=20% Similarity=0.244 Sum_probs=414.7
Q ss_pred hhHHHHHHHHHhhcCCeEEEEe------CCccccHHHHHHHHHHHHHHHH-HhcCCCCCEEEEEcCCcHHHHHHHHHHHh
Q 008491 7 AHICQCLSRIAAVKRNSVVTIT------GNRHNTGQQFVQDVLNLARGLL-EIGLRSGDIVAISALNSEWYLEWILAVAF 79 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~-~~gv~~g~~V~l~~~~~~~~~~~~lA~~~ 79 (564)
+++.++|+++++++||++|+++ .++++||+||.+++.++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4678999999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred hCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchh---------hHHHHhhhccCcceeeeecCCCCc-c-ccccccc
Q 008491 80 IGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDS---------WYLELQHTAIPSLRWHVSLGSSSS-D-FVNKRDM 148 (564)
Q Consensus 80 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 148 (564)
+|++++|+++.++.+++.+++++++++++|+++.... .+... ....+.+..++.++.... . .......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 240 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA-LRETPGVRHVLVYRKTNNPSVAFHAPRD 240 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHH-TTSCTTCCEEEEECSSCCSSCCCCSSSE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHH-HHhCCCCceEEEEecCCCCccccCCCcc
Confidence 9999999999999999999999999999999876532 12221 123344555555443211 0 0000111
Q ss_pred cchhhhhcccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHH-HHHHHhcCCCCceEEEecCchhhhHH
Q 008491 149 LTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSL-AKIAIVGYGEDDVYLHTAPLCHIGGL 227 (564)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~ 227 (564)
..+.++..... ........+++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..|+.|+.+.
T Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 319 (663)
T 1ry2_A 241 LDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGH 319 (663)
T ss_dssp EEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHH
T ss_pred ccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhh
Confidence 22333322111 11122344689999999999999999999999999876654 34456888999999999999999998
Q ss_pred -HHHHHHHHhCccEEEccC----CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHH
Q 008491 228 -SSAMAMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSE 302 (564)
Q Consensus 228 -~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~ 302 (564)
..++.+++.|+++++.+. .++..+++.|+++++|+++++|+.++.+.+..........+++||.++++||+++++
T Consensus 320 ~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~ 399 (663)
T 1ry2_A 320 TYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAE 399 (663)
T ss_dssp HHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHH
Confidence 567899999999999875 579999999999999999999999999876543222223678999999999999999
Q ss_pred HHHHHHhhCC--CCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeC-
Q 008491 303 LMKEATNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD- 379 (564)
Q Consensus 303 ~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~- 379 (564)
+++++.+.++ ++++++.||+||+++.++........ ....+++|.|+++++++++|+
T Consensus 400 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~v~i~d~~ 459 (663)
T 1ry2_A 400 VWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPN 459 (663)
T ss_dssp HHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSS
T ss_pred HHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCc--------------------ccCCCccccCcCCCeEEEEcCC
Confidence 9999999882 28999999999998766543220000 013457999999999999997
Q ss_pred C-----C-CCccEEEEec--ccchhhhccCCCCCCcccC--CCceEecCceeEEcCCCcEEEEeeccceeecCceeechH
Q 008491 380 G-----S-SHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPE 449 (564)
Q Consensus 380 ~-----~-~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 449 (564)
+ . |+.|||+++| |+++.||++++..+...+. .+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus 460 ~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 539 (663)
T 1ry2_A 460 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTA 539 (663)
T ss_dssp STTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHH
T ss_pred CCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHH
Confidence 3 2 7889999999 5899999999876555432 378999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEE
Q 008491 450 EVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 529 (564)
Q Consensus 450 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~ 529 (564)
+||++|.+||.|.+++|++.+++..++.++++|++.++..+.. ...+......++|++++++ .|+++++|..+
T Consensus 540 eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~------~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i 612 (663)
T 1ry2_A 540 EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST------ATDDELQDIKKHLVFTVRK-DIGPFAAPKLI 612 (663)
T ss_dssp HHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEE
T ss_pred HHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc------ccchhHHHHHHHHHHHHHH-hCCCCcCCeEE
Confidence 9999999999999999999998888899999999887521000 0000001236789999998 79999999998
Q ss_pred EEecCCCCCCCCCCcchHHHHHHHHhhccC
Q 008491 530 VLWRKPFPLTSTGKIRRDEVRREVMSHLKS 559 (564)
Q Consensus 530 ~~~~~~lP~t~~GK~~R~~l~~~~~~~i~~ 559 (564)
++ ++.||+|++||++|++|++.+..+++.
T Consensus 613 ~~-v~~lP~T~sGKi~R~~L~~~~~~~~~~ 641 (663)
T 1ry2_A 613 IL-VDDLPKTRSGKIMRRILRKILAGESDQ 641 (663)
T ss_dssp EE-CSCCCBCTTSCBCHHHHHHSCC-----
T ss_pred EE-cCCCCCCCccCchHHHHHHHHcCCCCC
Confidence 87 478999999999999999988776443
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.8e-76 Score=613.29 Aligned_cols=497 Identities=20% Similarity=0.229 Sum_probs=404.5
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceee
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVA 85 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v 85 (564)
..++.+.|+++++++|+++|+.+.++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhc--ccCCCCC
Q 008491 86 PLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG--YSLRSLP 163 (564)
Q Consensus 86 ~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 163 (564)
|+++.++.+++.++++.++++++++++.....+. ... . +....+.. .......
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~~-~----------------~~~~~~~~~~~~~~~~~ 137 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GIS-L----------------VSLSEIESAKLAEMPYE 137 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TSE-E----------------EEHHHHHHHHHHTCCCC
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cCc-c----------------cchhhhhhcccccCCcc
Confidence 9999999999999999999999999876432111 000 0 00111100 0011111
Q ss_pred CCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH--hcCCCCceEEEecCchhhhHHHHHHHHHHhCccEE
Q 008491 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHV 241 (564)
Q Consensus 164 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v 241 (564)
......++|+++++|||||||.||+|+++|+++.+.+.+.... +.+..+++++...|++|..++..++.++..|++++
T Consensus 138 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~ 217 (521)
T 3l8c_A 138 RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLF 217 (521)
T ss_dssp CSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEE
T ss_pred cCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEE
Confidence 2234578999999999999999999999999999887777665 66778899999999999999988899999999999
Q ss_pred EccC---CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEc
Q 008491 242 FIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLIS 318 (564)
Q Consensus 242 ~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~ 318 (564)
+.+. .++..+++.++++++|++.++|+++..+........ ..++++|.+++||+++++++.+.+.+.++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~ 295 (521)
T 3l8c_A 218 ALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295 (521)
T ss_dssp ECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc--ccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence 9876 489999999999999999999999988876543332 35789999999999999999999999998999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEeccc
Q 008491 319 AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAH 393 (564)
Q Consensus 319 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~ 393 (564)
.||+||+++.++......... ......++|+|+++++++++|++ .|+.|||+++|++
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~------------------~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~ 357 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMV------------------DNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPA 357 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHH------------------HHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTT
T ss_pred CcCccHHhhhhceeecccccc------------------cCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccc
Confidence 999999987766543221000 00123369999999999999976 5788999999999
Q ss_pred chhhhccCCCCCCccc---CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 394 VMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 394 ~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
++.||++++..+...| ++++||+|||+|++++||++++.||.+|+||.+|++|+|.+||++|.++|+|.+++|++.+
T Consensus 358 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 437 (521)
T 3l8c_A 358 VSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRY 437 (521)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCC
T ss_pred cChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEee
Confidence 9999999998887765 5788999999999999999999999999999999999999999999999999999999887
Q ss_pred cCc-ccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHH
Q 008491 471 NAR-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 549 (564)
Q Consensus 471 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l 549 (564)
++. .++.++++|++.++..... .......++|++++++ .|+.|++|..+++ +++||+|++||++|++|
T Consensus 438 ~~~~~~~~~~a~vv~~~~~~~~~---------~~~~~~~~~l~~~l~~-~l~~~~~P~~i~~-v~~lP~t~~GKidr~~L 506 (521)
T 3l8c_A 438 NKEHKVQNLLAYIVVKDGVKERF---------DRELELTKAIKASVKD-HMMSYMMPSKFLY-RDSLPLTPNGKIDIKTL 506 (521)
T ss_dssp SSSCC---CEEEEEECTTSGGGC---------SSHHHHHHHHHHHSGG-GSCGGGSCSEEEE-CSSCCBCTTSSBCHHHH
T ss_pred cCCCCceEEEEEEEecCcccccc---------ccchhhHHHHHHHHHh-hCccccCCeEEEE-ecccCCCCCcCccHHHH
Confidence 543 4578899999887621000 0012346889999998 7999999999887 58899999999999999
Q ss_pred HHHHHhhcc
Q 008491 550 RREVMSHLK 558 (564)
Q Consensus 550 ~~~~~~~i~ 558 (564)
++++.++-+
T Consensus 507 ~~~~~~~~~ 515 (521)
T 3l8c_A 507 INEVNNREG 515 (521)
T ss_dssp HHHTC----
T ss_pred hhhhhcCCc
Confidence 999876644
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.3e-74 Score=603.90 Aligned_cols=501 Identities=21% Similarity=0.211 Sum_probs=414.4
Q ss_pred hhHHHHHHHHHhh-----cCCeEEEEeC-----CccccHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEcCCcHHHHHHHH
Q 008491 7 AHICQCLSRIAAV-----KRNSVVTITG-----NRHNTGQQFVQDVLNLARGLLEI-GLRSGDIVAISALNSEWYLEWIL 75 (564)
Q Consensus 7 ~~l~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~~a~~L~~~-gv~~g~~V~l~~~~~~~~~~~~l 75 (564)
.++.++|++++++ +|+++|+.+. ++++||+||.++++++|++|++. |+++||+|+++++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567899999999 9999999972 37899999999999999999998 99999999999999999999999
Q ss_pred HHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhh
Q 008491 76 AVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILK 155 (564)
Q Consensus 76 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (564)
||+++|++++|+++.++.+++.++++.++++++++++.....+..+. ...+.++.++..++.... ....++.+.
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 191 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSCD-----GWLNFKKLL 191 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCCT-----TSEEHHHHH
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCcc-----ccccHHHHh
Confidence 99999999999999999999999999999999999988766554432 234555555544431110 111222222
Q ss_pred cccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHH--HHHHHHHHhcCCCCceEEEecCchhhhHHH-HHHH
Q 008491 156 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIV--QSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMA 232 (564)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~ 232 (564)
..... ........++++++|+|||||||.||+|+++|+ ++. ..... ..+++.++++++...|++|..++. .++.
T Consensus 192 ~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~ 268 (570)
T 3c5e_A 192 NEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLME 268 (570)
T ss_dssp HHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHH
T ss_pred hcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHH
Confidence 11111 111233468999999999999999999999999 444 33333 667788999999999999999986 6789
Q ss_pred HHHhCccEEEcc--CCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhh
Q 008491 233 MLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS 310 (564)
Q Consensus 233 ~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~ 310 (564)
++..|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.. .....++++|.+++|||++++++.+.+.+.
T Consensus 269 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 269 PWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 999999999986 589999999999999999999999999997652 112256899999999999999999999998
Q ss_pred CCCCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCcc
Q 008491 311 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG 385 (564)
Q Consensus 311 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~G 385 (564)
+ ++++++.||+||++..++...... ...+++|+|+++++++++|++ .|+.|
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~G 401 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVSKTMK-----------------------IKPGYMGTAASCYDVQIIDDKGNVLPPGTEG 401 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECCTTSC-----------------------CCTTCCCEECTTCCEEEECTTSCBCCTTCCE
T ss_pred h-CCchhhccchhhcccceecCcccc-----------------------cCCCcccccCCCceEEEECCCCCCCCCCCCC
Confidence 8 899999999999986544322110 123469999999999999876 57899
Q ss_pred EEEEe-----cccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCC
Q 008491 386 RILTR-----GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 460 (564)
Q Consensus 386 el~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~ 460 (564)
||+++ |++++.||++++..+...+. ++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~ 480 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPA 480 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTT
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCC
Confidence 99999 99999999999988877774 6899999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCC
Q 008491 461 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 540 (564)
Q Consensus 461 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~ 540 (564)
|.+++|++.+++..++.++++|++.++... .......++|++++++ .|+.|++|..++++ ++||+|+
T Consensus 481 V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----------~~~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~ 547 (570)
T 3c5e_A 481 VVETAVISSPDPVRGEVVKAFVVLASQFLS-----------HDPEQLTKELQQHVKS-VTAPYKYPRKIEFV-LNLPKTV 547 (570)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEECGGGTT-----------SCHHHHHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCBCT
T ss_pred cceEEEEeeeCCCCCeEEEEEEEECCcccC-----------cchHHHHHHHHHHHHh-hCccccCCcEEEEe-ccCCCCC
Confidence 999999999998888999999998765210 0012346789999988 79999999998875 7899999
Q ss_pred CCCcchHHHHHHHHhhc
Q 008491 541 TGKIRRDEVRREVMSHL 557 (564)
Q Consensus 541 ~GK~~R~~l~~~~~~~i 557 (564)
+||++|++|++.+...-
T Consensus 548 ~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 548 TGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp TCCBCHHHHHHHHTC--
T ss_pred CcCCcHHHHHHHHHhhh
Confidence 99999999999886543
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-75 Score=651.68 Aligned_cols=516 Identities=25% Similarity=0.334 Sum_probs=339.4
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeC--CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITG--NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
..++.++|.++++++||++|+++. ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 468999999999999999999985 689999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCC--C
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLR--S 161 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 161 (564)
++|++|.++.+++.+++++++++++|++......+..+.... .. .++..++..... .......+..+...... .
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--GV-VIVCIDDNESVP-IPEGCLRFTELTQSTTEASE 215 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--CC-EEEECCCCTTSC-CCTTEEEGGGTSSCCSGGGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--Cc-eEEEeCCccccc-CCcccccHHHHhhccccccc
Confidence 999999999999999999999999999988776655543221 12 233333221110 00111222222211111 1
Q ss_pred CCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH----HhcCCCCceEEEecCchhhhHHH-HHHHHHHh
Q 008491 162 LPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMV 236 (564)
Q Consensus 162 ~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~ 236 (564)
........++|+++|+|||||||.||+|+++|+++.+.+..... .+.+.++++++..+|++|.+++. .++.++..
T Consensus 216 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~ 295 (979)
T 3tsy_A 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRV 295 (979)
T ss_dssp GSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHH
T ss_pred cCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhc
Confidence 11223457899999999999999999999999999888776654 34577899999999999999985 56789999
Q ss_pred CccEEEccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcE
Q 008491 237 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL 316 (564)
Q Consensus 237 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i 316 (564)
|+++++.+.+++..+++.|+++++|++.++|+++..+.+....... .+++||.+++||+++++++.+++.+.||++++
T Consensus 296 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l 373 (979)
T 3tsy_A 296 GAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373 (979)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTS--CCTTCCEEEESSCCCCSSHHHHHHHHCTTCEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCC--CccceEEEEEcCCCCCHHHHHHHHHHCCCCeE
Confidence 9999999999999999999999999999999999999887655443 67899999999999999999999999999999
Q ss_pred EcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEe
Q 008491 317 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTR 390 (564)
Q Consensus 317 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~ 390 (564)
++.||+||++..++.......... ....+++|.|+++++++++|++ .|+.|||+++
T Consensus 374 ~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~ 435 (979)
T 3tsy_A 374 GQGYGMTEAGPVLAMSLGFAKEPF------------------PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435 (979)
T ss_dssp EECEECGGGCSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEE
T ss_pred EeeechhhhhHHHHhCCCCCCCcc------------------ccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEE
Confidence 999999999976655432111100 0133469999999999999954 5788999999
Q ss_pred cccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 391 GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 391 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
|++++.||++++..+...+++++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 436 g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~ 515 (979)
T 3tsy_A 436 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMK 515 (979)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------
T ss_pred CCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEec
Confidence 99999999999999998898999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 550 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~ 550 (564)
++..++.++++|+..++ ...+.+++++++++ .|+.|++|..+++ +++||+|++||++|++|+
T Consensus 516 ~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~-v~~lP~t~~GKi~r~~L~ 577 (979)
T 3tsy_A 516 EEAAGEVPVAFVVKSKD----------------SELSEDDVKQFVSK-QVVFYKRINKVFF-TESIPKAPSGKILRKDLR 577 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCcEEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccccCCeEEEE-eCCcCcCCCCCeeHHHHH
Confidence 88888999999988765 23556789999998 7999999998776 488999999999999999
Q ss_pred HHHHhhccCCCCC
Q 008491 551 REVMSHLKSLPSN 563 (564)
Q Consensus 551 ~~~~~~i~~~~~~ 563 (564)
+++.+.+.+.|.+
T Consensus 578 ~~~~~~~~~~~~~ 590 (979)
T 3tsy_A 578 AKLANGLGSGMAS 590 (979)
T ss_dssp -----------CC
T ss_pred HHHHhhcCCcccc
Confidence 9999988887764
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.4e-73 Score=597.16 Aligned_cols=495 Identities=20% Similarity=0.257 Sum_probs=395.8
Q ss_pred hHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeec
Q 008491 8 HICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPL 87 (564)
Q Consensus 8 ~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l 87 (564)
++.++|.++++ +|+++|+.+.++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 58899999999 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcc-eeeeecCCCCccccccccccchhhhhcccCCCCCCCC
Q 008491 88 NYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSL-RWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFTH 166 (564)
Q Consensus 88 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (564)
++.++.+++.+++++++++++++++.....+..... ..+.. ..++..+..... ......++.+..... ......
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~ 178 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE---PRLAPLFEELIDAAA-PAAKAA 178 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC---------CCCBHHHHHHTSC-CCSSCC
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc---cccccchhhhhccCC-Cccccc
Confidence 999999999999999999999999876655444321 12222 223332221100 000111222221111 111123
Q ss_pred CCCCCCeEEEEeecCCCCCCcceeechHHH-HHHHHHHHHHhcCCCCceEEEecCchhhhHHH-HHHHHHHhCccEEEc-
Q 008491 167 SWAPEGAVIICFTSGTTGSPKGVVISHSAL-IVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFI- 243 (564)
Q Consensus 167 ~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~- 243 (564)
...++|+++++|||||||.||+|+++|+++ ..........+++.++++++...|++|.+++. .++.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 457899999999999999999999999998 55555544556788999999999999999986 467899999999987
Q ss_pred cCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 244 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 244 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
+.+++..+++.|+++++|++.++|+.+..++........ ...++|.+++|||++++++.+.+.+.+ ++++++.||+|
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~T 335 (529)
T 2v7b_A 259 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR--ADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGST 335 (529)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG--GGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECT
T ss_pred CCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc--cCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchh
Confidence 558999999999999999999999999988765432221 123799999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccchhhh
Q 008491 324 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRY 398 (564)
Q Consensus 324 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~~gy 398 (564)
|++.+++...... ...+++|+|+++++++++|++ .|+.|||+++|++++.||
T Consensus 336 E~~~~~~~~~~~~-----------------------~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 336 EMLHIFLSNRAGA-----------------------VEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMY 392 (529)
T ss_dssp TTSSEEEECCTTC-----------------------CCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCB
T ss_pred hcCceeeccccCC-----------------------CccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCccccc
Confidence 9976554432111 023469999999999999975 688899999999999999
Q ss_pred ccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccceE
Q 008491 399 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 478 (564)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 478 (564)
++++..+...+. ++||+|||+|++++||.+++.||.+|+||.+|++|+|.+||++|.+||+|.+++|++. ++..++.+
T Consensus 393 ~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~ 470 (529)
T 2v7b_A 393 WNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT 470 (529)
T ss_dssp TTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred CCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence 999888877774 7899999999999999999999999999999999999999999999999999999998 66667888
Q ss_pred EEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 008491 479 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551 (564)
Q Consensus 479 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~ 551 (564)
+++|++.++.. . .....++|++++++ .|+.|++|..++++ ++||+|++||++|++|++
T Consensus 471 ~a~vv~~~~~~---~----------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 471 RAFVVLKREFA---P----------SEILAEELKAFVKD-RLAPHKYPRDIVFV-DDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEECTTCC---C----------CHHHHHHHHHHHHT-TSCTTTSCSEEEEE-SCCCBCTTSCBCHHHHHC
T ss_pred EEEEEecCCCC---c----------chhHHHHHHHHHHh-hcchhhCCeEEEEe-ccCCCCCccchhHHhHhh
Confidence 99998876510 0 01134689999998 89999999998875 789999999999999986
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3e-74 Score=597.09 Aligned_cols=471 Identities=24% Similarity=0.318 Sum_probs=386.4
Q ss_pred hhHHHHHHHHHhhcCC-eEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceee
Q 008491 7 AHICQCLSRIAAVKRN-SVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVA 85 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v 85 (564)
.++.+.|.++++++|+ ++|+.++++++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|++++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~v 96 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEE
Confidence 4778888899999887 9999999999999999999999999885 388999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCCCC
Q 008491 86 PLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLPFT 165 (564)
Q Consensus 86 ~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (564)
|+++.++.+++.++++++++++++++...... .....+..+. .+.. .......
T Consensus 97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~~-~~~~--------------------~~~~~~~ 149 (505)
T 3nyq_A 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERVD-VDVR--------------------ARGAVPE 149 (505)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEEE-CCTT--------------------CCCCCCC
T ss_pred EcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccccc-cccc--------------------cccCCCC
Confidence 99999999999999999999999998652110 0111111111 0000 0001112
Q ss_pred CCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHH-HHHHHHHhCccEEEcc
Q 008491 166 HSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SAMAMLMVGACHVFIP 244 (564)
Q Consensus 166 ~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~ 244 (564)
....++++++++|||||||.||+|+++|+++.+.+......+++.++++++..+|++|..++. .++.++..|+++++.+
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 334688999999999999999999999999999999999999999999999999999999885 6889999999999999
Q ss_pred CCChHHHHHHHHhccceEEEechHHHHHHHHHHhhcc-ccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 245 KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 245 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
.+++..+++.+ ++++|+++++|+.+..+.+...... ....++++|.+++||+++++++.+++.+.+ ++++++.||+|
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~T 307 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMT 307 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEET
T ss_pred CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchh
Confidence 99999999999 8899999999999999988653321 112457899999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC--------CCCccEEEEecccch
Q 008491 324 ETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVM 395 (564)
Q Consensus 324 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~--------~~~~Gel~v~~~~~~ 395 (564)
|++..++...... ....++|+|+++++++++|++ .|+.|||+++|++++
T Consensus 308 E~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~ 364 (505)
T 3nyq_A 308 ETLMNTSVRADGE-----------------------PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLF 364 (505)
T ss_dssp TTEEEEECCTTSC-----------------------CCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSC
T ss_pred hcccccccCCCCC-----------------------CCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchh
Confidence 9986554322111 123469999999999999875 278899999999999
Q ss_pred hhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeec-cceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcc
Q 008491 396 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 474 (564)
Q Consensus 396 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 474 (564)
.||++++..+...|.+++||+|||+|++++||.++++||. ||+||++|++|+|.+||++|.++|+|.+++|++.+++..
T Consensus 365 ~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 365 TEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp CEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCC
Confidence 9999999999999988999999999999999999999997 699999999999999999999999999999999999988
Q ss_pred cceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHH
Q 008491 475 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 551 (564)
Q Consensus 475 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~ 551 (564)
++.++++|++.+.. ...+.++|++++++ .|+.|++|..++++ ++||+|++||++|++|++
T Consensus 445 g~~l~a~vv~~~~~---------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 445 GERIVAWIVPADPA---------------APPALGTLADHVAA-RLAPHKRPRVVRYL-DAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEEESSTT---------------SCCCHHHHHHHHHH-HTCGGGSCSEEEEC-SCCCC-------------
T ss_pred CcEEEEEEEECCCC---------------CCCCHHHHHHHHHh-hCCCCcCccEEEEE-CCCCCCCCcCeeHHhhcc
Confidence 99999999987631 12457889999998 79999999998874 889999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4e-72 Score=640.87 Aligned_cols=488 Identities=19% Similarity=0.260 Sum_probs=413.5
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
++..++.++|.++++++|+++|+.++++++||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|++
T Consensus 461 ~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~ 540 (1304)
T 2vsq_A 461 HETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540 (1304)
T ss_dssp CCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhcccCCCCC
Q 008491 84 VAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKGYSLRSLP 163 (564)
Q Consensus 84 ~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (564)
++|++|.++.+++.++++++++++++++......... ++.....+..++... ... ....
T Consensus 541 ~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------~~~---~~~~ 599 (1304)
T 2vsq_A 541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR-------------FEE---QASD 599 (1304)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG-------------GGS---CSSC
T ss_pred EEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc-------------ccc---ccCC
Confidence 9999999999999999999999999998765432211 121122222221100 000 0111
Q ss_pred CCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEc
Q 008491 164 FTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 164 ~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
......++++||++|||||||.||||+++|+++.+. .+....+++.++++++...|+.|..+.+.++.+++.|+++++.
T Consensus 600 ~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 123457899999999999999999999999999865 4444567788899999999999999999999999999999998
Q ss_pred cC---CChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccc
Q 008491 244 PK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAY 320 (564)
Q Consensus 244 ~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~y 320 (564)
+. .++..+.+.|+++++|++.++|+++..+.+... ..++++|.+++|||++++++.+++.+.+++++++|.|
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 753 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeE
Confidence 75 689999999999999999999999999976521 1356899999999999999999999988778999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-----CCCccEEEEecccch
Q 008491 321 GMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVM 395 (564)
Q Consensus 321 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-----~~~~Gel~v~~~~~~ 395 (564)
|+||++..++......... .....++|+|+++++++|+|++ .|..|||+|+|++++
T Consensus 754 G~TE~~~~~~~~~~~~~~~-------------------~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~ 814 (1304)
T 2vsq_A 754 GPTEGTVFATAHVVHDLPD-------------------SISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVS 814 (1304)
T ss_dssp CCGGGSSCSEEEECCCCCS-------------------SCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCC
T ss_pred ChhHHhHHheeeeccCccc-------------------cCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccC
Confidence 9999998766544321100 0123469999999999999976 688999999999999
Q ss_pred hhhccCCCCCCccc------CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEee
Q 008491 396 LRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 469 (564)
Q Consensus 396 ~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~ 469 (564)
.||++++..|...| ++++||+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.
T Consensus 815 ~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~ 894 (1304)
T 2vsq_A 815 KGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVAD 894 (1304)
T ss_dssp CCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEE
T ss_pred ccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEE
Confidence 99999988777665 356799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHH
Q 008491 470 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 549 (564)
Q Consensus 470 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l 549 (564)
++...++.++++++.... .+.+++++++++ .||.|++|..++.+ ++||+|++||+||++|
T Consensus 895 ~~~~~~~~l~a~vv~~~~------------------~~~~~l~~~l~~-~Lp~ymvP~~~~~l-~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 895 RHESGDASINAYLVNRTQ------------------LSAEDVKAHLKK-QLPAYMVPQTFTFL-DELPLTTNGKVNKRLL 954 (1304)
T ss_dssp CCSSSCCEEEEEEECSSS------------------SCHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCCCSSCSSCCSCC
T ss_pred ecCCCCEEEEEEEeCCCC------------------CCHHHHHHHHHH-hChHhhhccEEEEe-cccCCCCCcccCHhhc
Confidence 888888899999987653 456889999998 79999999998875 7899999999999998
Q ss_pred HHHHHhhc
Q 008491 550 RREVMSHL 557 (564)
Q Consensus 550 ~~~~~~~i 557 (564)
.+......
T Consensus 955 ~~~~~~~~ 962 (1304)
T 2vsq_A 955 PKPDQDQL 962 (1304)
T ss_dssp CCCCGGGG
T ss_pred CCcchhhh
Confidence 76554443
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3e-71 Score=588.12 Aligned_cols=519 Identities=19% Similarity=0.200 Sum_probs=404.9
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeC----CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHh
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITG----NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAF 79 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~ 79 (564)
++..++.++|.++++++||++|+.+. ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 45679999999999999999999873 58999999999999999999999999999999999999999999999999
Q ss_pred hCceeeecCCCC---ChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhhc
Q 008491 80 IGGIVAPLNYRW---SFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILKG 156 (564)
Q Consensus 80 ~G~~~v~l~~~~---~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (564)
+|++++|+++.+ +.+++.++++.+++++++++......+........+....+.... .+....
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 153 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------LESIEL 153 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE--------------GGGCCG
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee--------------chhccc
Confidence 999999999987 457889999999999999987654433221111111111111110 000000
Q ss_pred ccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHH-HHHHHH
Q 008491 157 YSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-AMAMLM 235 (564)
Q Consensus 157 ~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~ 235 (564)
.. ..........++|+++++|||||||.||+|+++|+++.+.+......+++.++++++..+|++|.+++.. ++.+++
T Consensus 154 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 154 NR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp GG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHH
T ss_pred cc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHh
Confidence 00 0111223457899999999999999999999999999999999999999999999999999999999975 789999
Q ss_pred hCccEEEccCC----ChHHHHHHHHhccceEEEechHHHHHHHHHHhhc-cccCCCccceeeeecCCCCCHHHHHHHHhh
Q 008491 236 VGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-KTWKGRDSVKKILNGGGGLPSELMKEATNS 310 (564)
Q Consensus 236 ~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~ 310 (564)
.|+++++.+++ ++..+++.|+++++|++.++|+.+..+.+..... .....++++|.+++||+++++++.+++.+.
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 312 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA 312 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence 99999998864 7999999999999999999999999998875432 222467899999999999999999999988
Q ss_pred CC-----CCcEEcccccccccccccccccCCCCCC----CCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC-
Q 008491 311 FP-----KAKLISAYGMTETSSSLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG- 380 (564)
Q Consensus 311 ~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~- 380 (564)
|+ +.++++.||+||++++++.......... .............+.........++|.|+++ ++++|++
T Consensus 313 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~ 390 (590)
T 3kxw_A 313 FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDT 390 (590)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTT
T ss_pred HHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCC
Confidence 73 4579999999999987665432111000 0000000000000011111234578999998 7777765
Q ss_pred -----CCCccEEEEecccchhhhccCCCCCCcccC--------CCceEecCceeEEcCCCcEEEEeeccceeecCceeec
Q 008491 381 -----SSHVGRILTRGAHVMLRYWDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 447 (564)
Q Consensus 381 -----~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~ 447 (564)
.|+.|||+++|++++.||++++..+...|. +.+||+|||+|+++ ||.++++||.+|+||++|++|+
T Consensus 391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~ 469 (590)
T 3kxw_A 391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469 (590)
T ss_dssp CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTH
T ss_pred CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecC
Confidence 578899999999999999999888777664 33499999999999 9999999999999999999999
Q ss_pred hHHHHHHH-HcCCCcc--EEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccC-c
Q 008491 448 PEEVEAVL-LQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG-F 523 (564)
Q Consensus 448 ~~~ie~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~ 523 (564)
|.+||++| ..+|.|. +++|++.+++. ++.+++++++.++.. ...+.+++.+++++ .++. +
T Consensus 470 p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--------------~~~~~~~l~~~l~~-~l~~~~ 533 (590)
T 3kxw_A 470 PQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM--------------DDVAQDNLFNEIFE-LVYENH 533 (590)
T ss_dssp HHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC--------------CHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc--------------cchhHHHHHHHHHH-HHHHHc
Confidence 99999999 7889998 89999988776 677888888776510 12456677788877 5664 7
Q ss_pred CCCc-EEEEe-cCCCCCCCCCCcchHHHHHHHHhh
Q 008491 524 KAPR-LFVLW-RKPFPLTSTGKIRRDEVRREVMSH 556 (564)
Q Consensus 524 ~~p~-~~~~~-~~~lP~t~~GK~~R~~l~~~~~~~ 556 (564)
++|. .++++ .++||+|++||++|++|++++.+.
T Consensus 534 ~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 534 QLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp SCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred CCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 7775 34433 368999999999999999999754
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2e-71 Score=585.07 Aligned_cols=500 Identities=17% Similarity=0.197 Sum_probs=308.6
Q ss_pred cchhhHHHHHHHHHhhcCCeEEEEeCC----------ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHH
Q 008491 4 YSQAHICQCLSRIAAVKRNSVVTITGN----------RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEW 73 (564)
Q Consensus 4 ~~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~ 73 (564)
.+..++.+.|+++++++||++|+.+.+ +++||+||.++++++|++|.+.|+ +||+|+++++|+++++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 456789999999999999999998742 789999999999999999999999 799999999999999999
Q ss_pred HHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhh
Q 008491 74 ILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADI 153 (564)
Q Consensus 74 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (564)
+|||+++|++++|+++.++.+++.+++++++++++++++...... ..+....++.... ......
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~----------~~~~~~ 159 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV------ELPPETKVLDTKN----------QSFIEN 159 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC------CCCTTCEEEETTC----------HHHHHH
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc------ccCccceeecccc----------hhhhhh
Confidence 999999999999999999999999999999999999987643211 1111111111110 000011
Q ss_pred hhcccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH--------hcCCCCceEEEecCchhhh
Q 008491 154 LKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI--------VGYGEDDVYLHTAPLCHIG 225 (564)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~l~~~p~~~~~ 225 (564)
.... ..........++++++++|||||||.||+|+++|+++.+.+...... +.+...++++...|+.|..
T Consensus 160 ~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (562)
T 3ite_A 160 LSTQ--DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237 (562)
T ss_dssp HHHS--CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTH
T ss_pred cccc--cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhh
Confidence 1111 11112234467889999999999999999999999998877665543 3467789999999999999
Q ss_pred HHHHHHHHHHhCccEEEccCCC-hHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHH
Q 008491 226 GLSSAMAMLMVGACHVFIPKFE-SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELM 304 (564)
Q Consensus 226 ~~~~~~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~ 304 (564)
++..++.++..|+++++.+... +..+++.++++++|++.++|+++..+... ...++++|.+++||+++++++.
T Consensus 238 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTTCCEEEEESSCCCHHHH
T ss_pred hHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCceEEEEEecCCCCHHHH
Confidence 9888899999999999876533 57788999999999999999987765321 1257899999999999999999
Q ss_pred HHHHhhCCCCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC----
Q 008491 305 KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG---- 380 (564)
Q Consensus 305 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~---- 380 (564)
+.+.+.+ ++++++.||+||++..++........ ...++|+|++++++++++++
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~~~~ 368 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDS----------------------DTRCIGHPLGDSVAHVLAPGSNEH 368 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTS----------------------CTTEEEEECTTCEEEEECTTSSCB
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCC----------------------CCccccccCCCCeEEEEeCCCCCC
Confidence 9999987 89999999999998766554332111 23469999999999999865
Q ss_pred --CCCccEEEEecccchhhhccCCCCCCccc-CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHHc
Q 008491 381 --SSHVGRILTRGAHVMLRYWDQFLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 457 (564)
Q Consensus 381 --~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~ 457 (564)
.|+.|||+++|++++.||++++..+...+ ++++||+|||+|++++||+++++||.+|+||.+|++|+|.+||++|.+
T Consensus 369 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 448 (562)
T 3ite_A 369 VKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448 (562)
T ss_dssp CCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred CCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh
Confidence 57889999999999999999998887654 345699999999999999999999999999999999999999999999
Q ss_pred C-CCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCC
Q 008491 458 H-PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 536 (564)
Q Consensus 458 ~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l 536 (564)
+ +.+.+++|++.+++..++..+++++...+....... ...........++|++++++ .|+.|++|+.+++ +++|
T Consensus 449 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-~L~~y~~P~~i~~-v~~l 523 (562)
T 3ite_A 449 LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGEL---RWINENYKEINNSLRQACEQ-TLPAYMVPDFIIP-ISFI 523 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceeEEEEEecCCCCcceEEEEEEecccccccccc---cccccchhhHHHHHHHHHHh-hCCcccCCcEEEE-eccC
Confidence 8 778899999888877776656555544331110000 00001112335689999998 7999999999887 4889
Q ss_pred CCC-CCCCcchHHHHHHHHhh
Q 008491 537 PLT-STGKIRRDEVRREVMSH 556 (564)
Q Consensus 537 P~t-~~GK~~R~~l~~~~~~~ 556 (564)
|+| ++||++|++|++++.+.
T Consensus 524 P~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 524 PLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ---------------------
T ss_pred CCCCCCCcchHHHHHHHHhcc
Confidence 998 89999999999998753
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.5e-70 Score=581.68 Aligned_cols=517 Identities=18% Similarity=0.232 Sum_probs=405.0
Q ss_pred hhhHHHHHHHHHhhcCCeEEEEeC---CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCc
Q 008491 6 QAHICQCLSRIAAVKRNSVVTITG---NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGG 82 (564)
Q Consensus 6 ~~~l~~~l~~~a~~~p~~~a~~~~---~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~ 82 (564)
..+|.++|+++++++|+.+++... ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 348999999999999999988763 47899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCC-------hhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecCCCCccccccccccchhhhh
Q 008491 83 IVAPLNYRWS-------FKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLGSSSSDFVNKRDMLTADILK 155 (564)
Q Consensus 83 ~~v~l~~~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (564)
+++|+++.++ .+++.++++.+++++++++......+..... ..+....+. .....
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~~ 161 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELHVLS-----------------HAWFK 161 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCEEEE-----------------HHHHH
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcceecc-----------------hhhhh
Confidence 9999999998 7899999999999999999887665544322 122111110 00000
Q ss_pred cccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH-hcCCCCceEEEecCchhhhHHHH-HHHH
Q 008491 156 GYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI-VGYGEDDVYLHTAPLCHIGGLSS-AMAM 233 (564)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~~~~~-~~~~ 233 (564)
.. ...........++++++++|||||||.||+|+++|+++.+.+...... +++.++++++..+|++|.+++.. ++.+
T Consensus 162 ~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 240 (576)
T 3gqw_A 162 AL-PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTP 240 (576)
T ss_dssp TS-CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHH
T ss_pred cc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHH
Confidence 00 011112223468999999999999999999999999999888777655 78899999999999999999864 6678
Q ss_pred HHhCccEEEccC----CChHHHHHHHHhccceEEEechHHHHHHHHHHhhcc-ccCCCccceeeeecCCCCCHHHHHHHH
Q 008491 234 LMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEAT 308 (564)
Q Consensus 234 l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~~lr~~~~~Ge~l~~~~~~~~~ 308 (564)
+..|+++++.+. +++..+++.|+++++|++.++|+.+..+.+...... ....++++|.+++|||++++++.+++.
T Consensus 241 l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 320 (576)
T 3gqw_A 241 VATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFA 320 (576)
T ss_dssp HHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHH
Confidence 888999888764 588999999999999999999999988876543221 223578999999999999999999999
Q ss_pred hhCC-----CCcEEcccccccccccccccccCCCCCCCCCCCC--C-cccCCCCCC--cCCCCCcccCccCCcceEEEee
Q 008491 309 NSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--Q-AFGNVTPNS--VHQPQGVCVGKPAPHVELKVCS 378 (564)
Q Consensus 309 ~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~~ 378 (564)
+.|+ +.++++.||+||++..++................ . .-....+.. .......++|+|+|+++++++|
T Consensus 321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 400 (576)
T 3gqw_A 321 ECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 400 (576)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC
T ss_pred HHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC
Confidence 9874 6899999999999987765433211000000000 0 000000000 0001123699999999999998
Q ss_pred CC-----CCCccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHH
Q 008491 379 DG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 453 (564)
Q Consensus 379 ~~-----~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~ 453 (564)
++ .|+.|||+++|++++.||++++..+...+ .+|||+|||+|++ +||.++++||.||+||++|++|+|.+||+
T Consensus 401 ~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~ 478 (576)
T 3gqw_A 401 EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEY 478 (576)
T ss_dssp TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHH
T ss_pred CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHH
Confidence 75 67889999999999999999976655543 6789999999999 79999999999999999999999999999
Q ss_pred HHHcCCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccc-cCcCCCcEEEEe
Q 008491 454 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL-TGFKAPRLFVLW 532 (564)
Q Consensus 454 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~~~p~~~~~~ 532 (564)
+|.+||+|.+++|++..+... ...+++..... .....+++.+++++ .+ +.+++|..+.++
T Consensus 479 ~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~~p~~i~~v 539 (576)
T 3gqw_A 479 IAEQEPEIHSGDAIAFVTAQE--KIILQIQCRIS----------------DEERRGQLIHALAA-RIQSEFGVTAAIDLL 539 (576)
T ss_dssp HHTTSSSCCTTSEEEEECTTS--CEEEEEECCCC----------------CHHHHHHHHHHHHH-HHHHHHSCCEEEEEE
T ss_pred HHHhCcccccccEEEEEcCCc--cEEEEEEEecC----------------chhHHHHHHHHHHH-HHHHHhCCceeEEEE
Confidence 999999999988887766543 34555554433 12345677778877 45 789999987765
Q ss_pred c-CCCCCCCCCCcchHHHHHHHHhhccCCCC
Q 008491 533 R-KPFPLTSTGKIRRDEVRREVMSHLKSLPS 562 (564)
Q Consensus 533 ~-~~lP~t~~GK~~R~~l~~~~~~~i~~~~~ 562 (564)
. ++||+|++||++|++|++++.+.+.+.|.
T Consensus 540 ~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~ 570 (576)
T 3gqw_A 540 PPHSIPRTSSGKPARAEAKKRYQKAYAASLN 570 (576)
T ss_dssp CSSCSCBCTTSSBCHHHHHHHHHHHHTCC--
T ss_pred CCCCcCcCCCccchHHHHHHHHHHHhhhccc
Confidence 3 37999999999999999999999988775
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.8e-58 Score=476.44 Aligned_cols=412 Identities=18% Similarity=0.202 Sum_probs=313.1
Q ss_pred cccchhhHHHHHHHHHhhcCCeEEEEeCC---------ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHH
Q 008491 2 ANYSQAHICQCLSRIAAVKRNSVVTITGN---------RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLE 72 (564)
Q Consensus 2 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~ 72 (564)
.+++..+|.++|.++++++||++|+.+.+ +++||+||.++++++|++|++.|+ +||+|+++++|++++++
T Consensus 19 ~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 19 SHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp -----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHH
T ss_pred CCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHH
Confidence 46788899999999999999999999855 899999999999999999999996 99999999999999999
Q ss_pred HHHHHHhhCceeeecCC---CCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhcc-CcceeeeecCCCCccccccccc
Q 008491 73 WILAVAFIGGIVAPLNY---RWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAI-PSLRWHVSLGSSSSDFVNKRDM 148 (564)
Q Consensus 73 ~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (564)
++|||+++|++++|+++ .++.+++.+++++++++++|++......+........ .....++..+.
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 166 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL----------- 166 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----------
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----------
Confidence 99999999999999998 7789999999999999999999887665544321110 00011111111
Q ss_pred cchhhhhcccCCCCCCCCCCCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCC------CceEEEecCch
Q 008491 149 LTADILKGYSLRSLPFTHSWAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGE------DDVYLHTAPLC 222 (564)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~~~~l~~~p~~ 222 (564)
.... ...........++++++|+|||||||.||+|+++|+++.+++......+.+.. +++++..+|++
T Consensus 167 -----~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 240 (480)
T 3t5a_A 167 -----LDLD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFY 240 (480)
T ss_dssp -----SCTT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTT
T ss_pred -----cccc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCc
Confidence 0000 01111223446889999999999999999999999999999998888888877 89999999999
Q ss_pred hhhHHH-HHHHHHHhCccEEEccCC----ChHHHHHHHHhccceEEEechHHHHHHHHHHhh--ccccCCCccceeeeec
Q 008491 223 HIGGLS-SAMAMLMVGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNG 295 (564)
Q Consensus 223 ~~~~~~-~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~~~~~lr~~~~~ 295 (564)
|.+++. .++.+++.|+++++.++. ++..+++.++++++| +.++|+++..++..... ......+++||.+++|
T Consensus 241 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g 319 (480)
T 3t5a_A 241 HDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG 319 (480)
T ss_dssp STTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred CccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence 999975 678999999999998753 899999999999999 88999998888775421 1123467899999999
Q ss_pred CCCCCHHHHHHHHhhC-----CCCcEEcccccccccccccccccCCCCCCCCCCC-CCcccCCCCC-CcCCCCCcccCcc
Q 008491 296 GGGLPSELMKEATNSF-----PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL-PQAFGNVTPN-SVHQPQGVCVGKP 368 (564)
Q Consensus 296 Ge~l~~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~G~~ 368 (564)
||++++++.+++.+.| +++.+++.||+||++..++............... ....+...+. ........++|+|
T Consensus 320 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p 399 (480)
T 3t5a_A 320 SERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399 (480)
T ss_dssp CTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECC
T ss_pred CCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcc
Confidence 9999999999999988 3458999999999998766544321100000000 0000000000 0001233579999
Q ss_pred CCcceEEEeeCC------CCCccEEEEecccchhhhccCCCCCCcccC-----------CCceEecCceeEEcCCCcEEE
Q 008491 369 APHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWL 431 (564)
Q Consensus 369 ~~~~~~~i~~~~------~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~ 431 (564)
++ ++++|+|++ .|+.|||+|+|++++.||+++++.+...|. ++|||+|||+|+++ ||.|++
T Consensus 400 ~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~ 477 (480)
T 3t5a_A 400 RS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFI 477 (480)
T ss_dssp SS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEE
T ss_pred cC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEE
Confidence 99 999999975 588999999999999999999888777663 67899999999997 999999
Q ss_pred Eee
Q 008491 432 VGR 434 (564)
Q Consensus 432 ~GR 434 (564)
+||
T Consensus 478 ~GR 480 (480)
T 3t5a_A 478 IGR 480 (480)
T ss_dssp CC-
T ss_pred eCC
Confidence 998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=7.3e-54 Score=422.86 Aligned_cols=317 Identities=19% Similarity=0.241 Sum_probs=272.0
Q ss_pred CCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccCCChH
Q 008491 170 PEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPKFESK 249 (564)
Q Consensus 170 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 249 (564)
.++++||+|||||||.||+|+++|+++.+++......++++++|++++.+|++|++++..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999999999999999999999999999999999899999999999987652 2
Q ss_pred HHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccccccccc
Q 008491 250 SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 329 (564)
Q Consensus 250 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 329 (564)
..++.|+++++|++.++|+++..+++..... ..+++||.+++||+++++++.+++.+. ++++++.||+||+++.+
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~---~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~ 188 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATS---GQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV 188 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG---GGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccccc---ccCCcceEEEEcccCCCchheeccccc--CceEEecccccccccee
Confidence 2367789999999999999999998765433 257899999999999999999999885 89999999999998776
Q ss_pred cccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCCCCCccEEEEecccchhhhccCCCCCCccc
Q 008491 330 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 409 (564)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 409 (564)
+....... ..+++|.+.|++++.+.+. ||++++|+..
T Consensus 189 ~~~~~~~~-----------------------~~g~~~~~~pgv~~~~~~~-----Gel~~~g~~~--------------- 225 (358)
T 4gs5_A 189 ALKALNGP-----------------------EASELYVFLPGIQYGVDER-----GCLHISGAVT--------------- 225 (358)
T ss_dssp EEEECSST-----------------------TCCSCEEECTTCEEEECTT-----SEEEEESGGG---------------
T ss_pred eccccccc-----------------------ccceeeccCCCeEEEecCc-----CceEEecccc---------------
Confidence 65543322 3345899999999988654 9999998642
Q ss_pred CCCceEecCceeEEcCCCcEEEEeeccceeecCceeechHHHHHHHH---cCCCccEEEEE-eeecCcccceEEEEEEec
Q 008491 410 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL---QHPGIIGIVVV-GIANARLTEMVVACVRLR 485 (564)
Q Consensus 410 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~ 485 (564)
.++||+|||+|++++|| ++++||.||+||.+|++|+|.+||++|. +||.|.+++|+ +.+++..++.++++|+..
T Consensus 226 -~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 226 -NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp -TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred -cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 46799999999999988 6677999999999999999999998774 57999988765 677888889999998876
Q ss_pred cccccccccccccchhHHhhhhHHHHHHHhhhccccCcCCCcEEEEecCCCCCCCCCCcchHHHHHHHHhhc
Q 008491 486 ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 557 (564)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK~~R~~l~~~~~~~i 557 (564)
.. ....++|++++++ .|+.|++|+.++++ ++||+|++||++|++|++++.+..
T Consensus 304 ~~-----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 304 MP-----------------EALTERLTAEIRS-RVSTYENPKHIYFA-KAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CC-----------------HHHHHHHHHHHHH-HSCGGGSCSCEEEE-SSCCBCTTSCBCHHHHHHHTC---
T ss_pred CC-----------------CcCHHHHHHHHHh-hCCCCCCceEEEEE-CCcCCCCCCChhHHHHHHHhhhhc
Confidence 54 2456789999998 79999999998875 789999999999999999887654
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.6e-46 Score=383.58 Aligned_cols=330 Identities=16% Similarity=0.166 Sum_probs=268.5
Q ss_pred CCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHH---HHhcCCCCceEEEecCc-hhhhHHHHHHHHHHhCccEEEc
Q 008491 168 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 168 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
..++++++++|||||||.||+|+++|+++........ ..+++.++++++...|+ .|..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4678999999999999999999999999876654433 36778899999999998 5777777788999999999998
Q ss_pred cCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 244 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 244 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
+..+++.+++.|+++++|++.++|+++..|++..........++++|.+++|||++++++.+.+.+.| ++++++.||+|
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~T 247 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLS 247 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCch
Confidence 88899999999999999999999999999998876554422357899999999999999999999998 89999999999
Q ss_pred ccccc-ccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecccchh
Q 008491 324 ETSSS-LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 396 (564)
Q Consensus 324 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~~~~~ 396 (564)
|+++. .+...... .. ..+.+.+++.++++|++ .|+.|||+++|..
T Consensus 248 E~~g~~~~~~~~~~------------------------~~-g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t--- 299 (443)
T 2y4o_A 248 EVMGPGVACECVET------------------------KD-GPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT--- 299 (443)
T ss_dssp TTTEEEEEEECTTT------------------------CC-SEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS---
T ss_pred hhcCCeEEeccCCC------------------------CC-ceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC---
Confidence 98543 22211100 00 14557789999999853 6789999999731
Q ss_pred hhccCCCCCCcccCCCceEecCceeEEcCC-CcE-----EEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 397 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 397 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
...+ +.+||+|||+|+++++ |.+ ++.||.+|+||.+|++|+|.+||++|.++|+|.+++|++.+
T Consensus 300 ---------~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~ 369 (443)
T 2y4o_A 300 ---------KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLS 369 (443)
T ss_dssp ---------CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred ---------cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEe
Confidence 2222 5689999999999999 987 89999999999999999999999999999999999999887
Q ss_pred cCcccceEEEEEEecc--ccccccccccccchhHHhhhhHHHHHHHhhhccccCc-CCCcEEEEec-CCCCCCCCCCcch
Q 008491 471 NARLTEMVVACVRLRE--SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRR 546 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GK~~R 546 (564)
++..++.++++|++.+ +.. ....+.+++++++++ .|+.+ ++|..+.++. ++||+|++||++|
T Consensus 370 ~~~~~~~~~a~v~~~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r 435 (443)
T 2y4o_A 370 RDGHMDRLDLAVELRSEAAAS-------------VTDGERAALARELQH-RIKTMVGVSSGVTVLAAGGIPATATGKARR 435 (443)
T ss_dssp EETTEEEEEEEEEECHHHHTT-------------CCHHHHHHHHHHHHH-HHHHHTCCCCEEEEECTTCSCCCTTSCCCS
T ss_pred cCCCCceEEEEEEECCccccc-------------chhhHHHHHHHHHHH-HHHHHhCCceEEEEeCCCcccCccCCcceE
Confidence 7766788899998875 210 012345778888887 68776 5887766542 5899999999999
Q ss_pred HHHH
Q 008491 547 DEVR 550 (564)
Q Consensus 547 ~~l~ 550 (564)
...+
T Consensus 436 ~~~~ 439 (443)
T 2y4o_A 436 VIDR 439 (443)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7543
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.1e-46 Score=383.99 Aligned_cols=325 Identities=18% Similarity=0.207 Sum_probs=261.9
Q ss_pred CCC-CCeEEEEeecCCCCCCcceeechHHHHHHHHHHH---HHhcCCCCceEEEecCchhhhH-HHHHHHHHHhCccEEE
Q 008491 168 WAP-EGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGG-LSSAMAMLMVGACHVF 242 (564)
Q Consensus 168 ~~~-~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~-~~~~~~~l~~G~~~v~ 242 (564)
..+ +++++++|||||||.||+|+++|+++.+.+.... ..+++.++++++...|+.|..+ +...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 8899999999999999999999999977665553 3457899999999999876555 4567888999999999
Q ss_pred ccCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEccccc
Q 008491 243 IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGM 322 (564)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~ 322 (564)
.+..++..+++.|+++++|++.++|+++..|++..........++++|.+++|||++++++.+.+.+.| ++++++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 988899999999999999999999999999999887766544578999999999999999999999999 9999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecccchh
Q 008491 323 TETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 396 (564)
Q Consensus 323 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~~~~~ 396 (564)
||+++.++....... ...|.|.++++++++|++ .|+.|||+++|..
T Consensus 241 TE~~~~~~~~~~~~~-------------------------~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~--- 292 (436)
T 3qov_A 241 TEMNGPGVAFECQEQ-------------------------NGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD--- 292 (436)
T ss_dssp GGGTEEEEEEECTTC-------------------------SSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS---
T ss_pred hhhcCCeeEEecCCC-------------------------CeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC---
Confidence 999654322221100 016777889999999943 6889999999832
Q ss_pred hhccCCCCCCcccCCCceEecCceeEEcCCC------c---EEEEeeccceeecCceeechHHHHHHHHcCCCccEEEEE
Q 008491 397 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG------N---VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 467 (564)
Q Consensus 397 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~ 467 (564)
...+ +.+||+|||+|+++++| . +++.||.+|+||.+|++|+|.+||++|.++|+|.+++|+
T Consensus 293 ---------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv 362 (436)
T 3qov_A 293 ---------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLI 362 (436)
T ss_dssp ---------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEE
T ss_pred ---------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEE
Confidence 2222 57899999999999998 5 699999999999999999999999999999999999999
Q ss_pred eeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCc-CCCcEEEEecC--CCCCCCCCCc
Q 008491 468 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRK--PFPLTSTGKI 544 (564)
Q Consensus 468 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~--~lP~t~~GK~ 544 (564)
+.+++..++.++++|++. +.... .....+++++++++ .|+.+ ++|..+.++ + +||+|+ ||+
T Consensus 363 ~~~~~~~~~~l~a~v~~~-~~~~~------------~~~~~~~l~~~l~~-~l~~~~~~p~~i~~v-~~~~lP~t~-GKi 426 (436)
T 3qov_A 363 TLETVNNQDEMIVEVELS-DLSTD------------NYIELEKIRRDIIR-QLKDEILVTPKVKLV-KKGSLPQSE-GKA 426 (436)
T ss_dssp EEEEETTEEEEEEEEEEC-TTCCC------------CHHHHHHHHHHHHH-HHHHHHSSCCEEEEE-CTTCCC-------
T ss_pred EEEcCCCCcEEEEEEEEc-Ccccc------------chhhHHHHHHHHHH-HHHHhcCCceEEEEe-CCCcccCcC-Ccc
Confidence 998887888999999987 41100 01235677777777 67777 888877764 6 899999 999
Q ss_pred chH
Q 008491 545 RRD 547 (564)
Q Consensus 545 ~R~ 547 (564)
+|.
T Consensus 427 ~R~ 429 (436)
T 3qov_A 427 VRV 429 (436)
T ss_dssp -CE
T ss_pred eEE
Confidence 985
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.6e-46 Score=381.25 Aligned_cols=327 Identities=13% Similarity=0.128 Sum_probs=267.2
Q ss_pred CCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHH---HHhcCCCCceEEEecCc-hhhhHHHHHHHHHHhCccEEEc
Q 008491 168 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 168 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
..++++++++|||||||.||+|+++|+++........ ..+++.++++++...|+ .|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 3678899999999999999999999999876654433 35778899999999998 6778787788999999999998
Q ss_pred cCCChHHHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCCHHHHHHHHhhCCCCcEEcccccc
Q 008491 244 PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMT 323 (564)
Q Consensus 244 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~~~~~~~~~~~~~~~~i~~~yG~t 323 (564)
+..+++.+++.|+++++|+++++|+++..|++..........++++|.+++|||++++++.+.+.+.| ++++++.||+|
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~T 245 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLS 245 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCch
Confidence 88899999999999999999999999999998876544322357899999999999999999999988 89999999999
Q ss_pred ccccc-ccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCccCCcceEEEeeCC------CCCccEEEEecccchh
Q 008491 324 ETSSS-LTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVML 396 (564)
Q Consensus 324 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~------~~~~Gel~v~~~~~~~ 396 (564)
|+++. ++...... . ...+.+.+++.++++|++ .|+.|||+++|.
T Consensus 246 E~~g~~~~~~~~~~------------------------~-~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---- 296 (437)
T 2y27_A 246 EVMGPGVASECVET------------------------K-DGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL---- 296 (437)
T ss_dssp TTTEEEEEECCTTT------------------------C-SSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES----
T ss_pred hhcCCeeEEecCCC------------------------C-CceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC----
Confidence 98433 22211100 0 015567789999999854 678999999982
Q ss_pred hhccCCCCCCcccCCCceEecCceeEEcC-CCcE-----EEEeeccceeecCceeechHHHHHHHHcCCCccEEEEEeee
Q 008491 397 RYWDQFLAKPSVSTGEVWLDTGDIGSIDD-GGNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 470 (564)
Q Consensus 397 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 470 (564)
+...+ +.+||+|||+|++++ +|++ ++.||.+|+|+.+|++|+|.+||++|.+||+|.+++|++.+
T Consensus 297 --------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~ 367 (437)
T 2y27_A 297 --------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLT 367 (437)
T ss_dssp --------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEE
T ss_pred --------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEe
Confidence 12222 568999999999999 6986 89999999999999999999999999999999999988887
Q ss_pred cCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHHHHhhhccccCc-CCCcEEEEec-CCCCCCCCCCcchHH
Q 008491 471 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFPLTSTGKIRRDE 548 (564)
Q Consensus 471 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP~t~~GK~~R~~ 548 (564)
++..++.++++|++.++.. ....+.+++++++++ .|+.+ ++|..+.++. ++||+|+ ||++|..
T Consensus 368 ~~~~~~~l~a~v~~~~~~~-------------~~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 368 KEGPLDVLTLNVEPCPETA-------------PDTAAIQVAKQALAY-DIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EETTEEEEEEEECBCTTTT-------------TCHHHHHHHHHHHHH-HHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred ecCCCceEEEEEEECCCcc-------------chhhhHHHHHHHHHH-HHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 7767788999998876510 001345778888887 68887 5887766543 5899999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=3.4e-29 Score=248.91 Aligned_cols=232 Identities=17% Similarity=0.193 Sum_probs=176.2
Q ss_pred CCCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHH---HHhcCCCCceEEEecCc-hhhhHHHHHHHHHHhCccEEEc
Q 008491 168 WAPEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKI---AIVGYGEDDVYLHTAPL-CHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 168 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
..++++++++|||||||.||+|+++|+++.....+.. ...++.++++++...|+ +|..++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877543 45567889999999999 99999988888899999 6666
Q ss_pred cCCChH-----------------------HHHHHHHhccceEEEechHHHHHHHHHHhhccccCCCccceeeeecCCCCC
Q 008491 244 PKFESK-----------------------SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 300 (564)
Q Consensus 244 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~~Ge~l~ 300 (564)
..+++. .+++.|+++++|++.++|+++..|++....... .++++|.+++|||+++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQ--MKQSLAQITLGGTELN 244 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHH--HHHHCSEEEEESSCCC
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhcc--ccCCeeEEEECCccCC
Confidence 667777 888899999999999999999999876443222 4578999999999999
Q ss_pred HHHHHHHH-hhCCCCcEEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCcCCCCCcccCcc------CCcce
Q 008491 301 SELMKEAT-NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP------APHVE 373 (564)
Q Consensus 301 ~~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~ 373 (564)
+++++++. +.||++++++.||+||+++++..+... ++|.| +++++
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~----------------------------~~G~~~~~~~~~~~~~ 296 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT----------------------------SESQQVIYDSFSPFIT 296 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC----------------------------TTCSSCEEECCTTTEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc----------------------------cCCCcccccCCCCCeE
Confidence 99999999 999899999999999998665332211 37888 99999
Q ss_pred EEEeeC-C-----CCCccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcCC--C-------cEEEEeeccce
Q 008491 374 LKVCSD-G-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--G-------NVWLVGRRNGR 438 (564)
Q Consensus 374 ~~i~~~-~-----~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d~ 438 (564)
++++|+ + .|+.|||++++.....- --+|+|||+++..+. | .+..++|.++.
T Consensus 297 v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~--------------l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~ 362 (369)
T 3hgu_A 297 YDVVDSITAQTVEYGERGNVIVTHLSPWAF--------------YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGR 362 (369)
T ss_dssp EEEECTTTCSBCCTTCEEEEEEEEEETTEE--------------EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----
T ss_pred EEEECCCCCcCCCCCCceEEEEEEcCcccc--------------cccccCCceEEEecCCCCCcCcccccceeccccCCC
Confidence 999997 3 68999999997431110 115899999987653 2 24455666777
Q ss_pred eecCce
Q 008491 439 IKSGGE 444 (564)
Q Consensus 439 i~~~G~ 444 (564)
.++.|.
T Consensus 363 ~~i~gv 368 (369)
T 3hgu_A 363 KVIEGV 368 (369)
T ss_dssp ------
T ss_pred ceeeec
Confidence 776664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.47 E-value=2.6e-13 Score=108.09 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=70.8
Q ss_pred eeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHH
Q 008491 433 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 512 (564)
Q Consensus 433 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (564)
.|.||+|+++|.+++|.+||++|.+||+|.++++++.+++..++.+.++|++.++.. ..........++++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~---------~~~~~~~~l~~~i~ 71 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT---------DDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC---------CCHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc---------cccchhhhhHHHHH
Confidence 489999999999999999999999999999999999999988999999999887621 01111122334455
Q ss_pred HHhhhccccCcCCCcEEEEe-cCCCCCCCCCCcch
Q 008491 513 QHCREKNLTGFKAPRLFVLW-RKPFPLTSTGKIRR 546 (564)
Q Consensus 513 ~~~~~~~l~~~~~p~~~~~~-~~~lP~t~~GK~~R 546 (564)
+.+.. . +.++..+.++ .++|||| +||++|
T Consensus 72 ~~l~~-~---~gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 72 RQLKD-E---ILVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHH-H---HSSCCEEEEECTTCSCCC----CCC
T ss_pred HHHHH-H---hCCccceEEEcCCeecCC-CCCcch
Confidence 55544 2 2344344443 3579998 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.42 E-value=4.8e-13 Score=106.21 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=69.1
Q ss_pred eeccceeecCceeechHHHHHHHHcCCCccEEEEEeeecCcccceEEEEEEeccccccccccccccchhHHhhhhHHHHH
Q 008491 433 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 512 (564)
Q Consensus 433 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (564)
||.+|+|+++|.+++|.+||++|.+||+|.++++++.+++.+++.+++++++ ++... ..........+.++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~--------~~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFT--------DDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCC--------CCHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccc--------cchhHHHHHHHHHH
Confidence 7999999999999999999999999999998888888777778899999998 54110 00001112344555
Q ss_pred HHhhhccccCcCCCcEEEEec-CCCCCCCCCCcchH
Q 008491 513 QHCREKNLTGFKAPRLFVLWR-KPFPLTSTGKIRRD 547 (564)
Q Consensus 513 ~~~~~~~l~~~~~p~~~~~~~-~~lP~t~~GK~~R~ 547 (564)
+++.+ . +.++..+.++. .+||+| +||++|.
T Consensus 72 ~~l~~-~---~~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 72 RQLKD-E---ILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHH-H---HSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHHH-h---hCCceEEEEECCCCccCC-CCceEEE
Confidence 55554 2 23333444432 379999 9999884
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.86 E-value=4.2e-08 Score=99.58 Aligned_cols=87 Identities=7% Similarity=0.003 Sum_probs=63.0
Q ss_pred CCCccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcC----CCcEEEEeeccceeecCceeechHHHHHHHH
Q 008491 381 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 456 (564)
Q Consensus 381 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~ 456 (564)
.|+.+||+++... |.| .|++||+.++.. ...+.++||.++++.+.|++++..+||.++.
T Consensus 390 ~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~ 452 (581)
T 4epl_A 390 IGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVE 452 (581)
T ss_dssp TTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred CCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHH
Confidence 6888999999753 332 389999999864 2578999999999999999999999999997
Q ss_pred c------CC--CccEEEEEeeecCcccceEEEEEEec
Q 008491 457 Q------HP--GIIGIVVVGIANARLTEMVVACVRLR 485 (564)
Q Consensus 457 ~------~~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 485 (564)
+ .. .|.|..++..... ....-+.++++.
T Consensus 453 ~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~ 488 (581)
T 4epl_A 453 SAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEIS 488 (581)
T ss_dssp HHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEES
T ss_pred HHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeec
Confidence 5 22 3567776653222 122344555653
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.83 E-value=5e-08 Score=99.34 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=51.8
Q ss_pred CCCccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcC----CCcEEEEeeccceeecCceeechHHHHHHHH
Q 008491 381 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 456 (564)
Q Consensus 381 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~ 456 (564)
.|+.+||+++..+ |.| .|++||+.++.. ...+.++||.++++.+.|++++..+||++|.
T Consensus 383 ~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~ 445 (581)
T 4eql_A 383 LGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVS 445 (581)
T ss_dssp TTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHH
T ss_pred CCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHH
Confidence 7888999999753 222 389999999875 4579999999999999999999999999998
Q ss_pred cC
Q 008491 457 QH 458 (564)
Q Consensus 457 ~~ 458 (564)
+.
T Consensus 446 ~a 447 (581)
T 4eql_A 446 QA 447 (581)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.69 E-value=1.6e-07 Score=95.76 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=62.6
Q ss_pred CCCccEEEEecccchhhhccCCCCCCcccCCCceEecCceeEEcC----CCcEEEEeeccceeecCceeechHHHHHHHH
Q 008491 381 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 456 (564)
Q Consensus 381 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~ 456 (564)
.|+.+||+++... |+| .|++||+++++. ...+.++||.++++++.|+++++.+||+++.
T Consensus 395 ~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 395 VGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp TTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred CCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 6788999998643 443 289999999873 4679999999999999999999999999997
Q ss_pred cC------CC--ccEEEEEeeecCcccceEEEEEEec
Q 008491 457 QH------PG--IIGIVVVGIANARLTEMVVACVRLR 485 (564)
Q Consensus 457 ~~------~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 485 (564)
+. .+ |.|..++..... ....-+.++++.
T Consensus 458 ~a~~~l~~~g~~l~eft~~~d~~~-~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 458 NASKLLREVNTSVVEYTSFADTKT-IPGHYVIYWELL 493 (609)
T ss_dssp HHHHGGGGTTEEEEEEEEEEECSS-SSCEEEEEEEEE
T ss_pred HHHHhhhccCCeEEEEEEecCCCC-CCCcEEEEEEEe
Confidence 42 23 456666532222 222344555554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.84 E-value=0.59 Score=46.35 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=80.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc--HHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS--EWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 108 (564)
-.+|.+.+...+..+++.+...|+.++|++....+-+ ...+..+++++..|+.+++.+. ...+.+...+++.+++.+
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 3589999988888888888888999999999988743 4455677888999999988754 467888999999999999
Q ss_pred EecCCchhhHHHHhhh-c----cCcceeeeecCCC
Q 008491 109 VTDESSDSWYLELQHT-A----IPSLRWHVSLGSS 138 (564)
Q Consensus 109 l~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~ 138 (564)
+..+.....+...... . ++.++.+++-+..
T Consensus 183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 9988766555443211 1 4556666655533
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.46 E-value=1.3 Score=43.92 Aligned_cols=105 Identities=19% Similarity=0.069 Sum_probs=78.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc--HHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEE
Q 008491 32 HNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS--EWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLV 109 (564)
Q Consensus 32 ~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il 109 (564)
.+|.+.+...+..+++.+...|+.++|++....+.. ...+...++++..|+.+++++. .+.+.+...+++.+++.++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence 589999988888888888888999999999988853 4445567888999999987765 4788899999999999999
Q ss_pred ecCCchhhHHHHhh-hc----cCcceeeeecCC
Q 008491 110 TDESSDSWYLELQH-TA----IPSLRWHVSLGS 137 (564)
Q Consensus 110 ~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~ 137 (564)
..+.....+..... .. .+.++.+++-+.
T Consensus 188 ~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 188 VTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred ECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 88876655544321 11 245555555443
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.22 E-value=1.4 Score=43.71 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=78.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc--HHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEE
Q 008491 32 HNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS--EWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLV 109 (564)
Q Consensus 32 ~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il 109 (564)
.+|.+.+...+..+++.+...|+.++|++....+-+ ...+...++++..|+.+++++.. +.+.+...+++.+++.++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 588999988888888888888999999999988853 44455678889999999887654 788889999999999999
Q ss_pred ecCCchhhHHHHhh-h----ccCcceeeeecCC
Q 008491 110 TDESSDSWYLELQH-T----AIPSLRWHVSLGS 137 (564)
Q Consensus 110 ~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~ 137 (564)
..+.....+..... . ..+.++.+++-+.
T Consensus 190 ~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 190 VTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred ECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 88876655443321 1 1245565555543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=88.07 E-value=3.7 Score=41.35 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=78.0
Q ss_pred cCCeEEEEe---------CCccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc-HHHHHHHHHHHhhCceeeecCC
Q 008491 20 KRNSVVTIT---------GNRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS-EWYLEWILAVAFIGGIVAPLNY 89 (564)
Q Consensus 20 ~p~~~a~~~---------~~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~-~~~~~~~lA~~~~G~~~v~l~~ 89 (564)
.|+.+|.+. ++-.+|.+.+...+..... ..++.+++++....|-. .-.+..+++++..|+.++..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 356666554 2245888888776655443 35889999998888766 333345678888999988775
Q ss_pred CCChhhHHHHHhhcCCcEEEecCCchhhHHHHhhhccCcceeeeecC
Q 008491 90 RWSFKEASRAITSIRPVMLVTDESSDSWYLELQHTAIPSLRWHVSLG 136 (564)
Q Consensus 90 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (564)
.++++.+...+++.+++.+...+.....+..........++.+++-+
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 46789999999999999999988766655544322222455555444
No 46
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=84.93 E-value=13 Score=37.80 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=76.3
Q ss_pred CCCCeEEEEeecC-CCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEcc
Q 008491 169 APEGAVIICFTSG-TTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 244 (564)
Q Consensus 169 ~~~~~a~i~~TSG-sTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 244 (564)
.|+.+|++....+ ..+. .-.+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 4677877654321 1122 246788887665555554 45788999999888865433 567789999999999887
Q ss_pred C-CChHHHHHHHHhccceEEEechHHHHHHHHH
Q 008491 245 K-FESKSALEAVEQHCVTSLITVPAIMADLATL 276 (564)
Q Consensus 245 ~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 276 (564)
+ ...+.+...++..+++.+++.+.....+...
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~ 141 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKPV 141 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHH
Confidence 6 6788999999999999999998877666544
No 47
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=84.66 E-value=10 Score=38.15 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH---hcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++. ..-.+|++.+...+...... .++++++++....+.... .+..+++++..|+..+.+++
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCC
Confidence 567788764 12568999887666655554 478899999988886543 35677889999999998876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLATL 276 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 276 (564)
...+.+...++..++..+++.+.....+...
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 120 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhHHhh
Confidence 6788999999999999999998877665444
No 48
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=84.60 E-value=5.7 Score=40.53 Aligned_cols=87 Identities=9% Similarity=0.091 Sum_probs=68.5
Q ss_pred eeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CChHHHHHHHHhccceEEE
Q 008491 189 VVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 264 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 264 (564)
..+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++ ...+.+...++..++++++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 46888888665555554 45789999999888865433 5677889999999988876 7789999999999999999
Q ss_pred echHHHHHHHHH
Q 008491 265 TVPAIMADLATL 276 (564)
Q Consensus 265 ~~P~~~~~l~~~ 276 (564)
+.......+...
T Consensus 128 ~~~~~~~~~~~~ 139 (550)
T 3rix_A 128 VSKKGLQKILNV 139 (550)
T ss_dssp ECGGGHHHHHHH
T ss_pred EcHHHHHHHHHH
Confidence 998877766554
No 49
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=84.29 E-value=9.8 Score=38.61 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.++.+|++.. .+| -.+|++.+...+..... ..++++++++....+.... .+..+++++..|+..+.+++
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 4677876542 222 45888888666555554 4578899999988887543 35677889999999888876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLATL 276 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 276 (564)
...+.+...++..++..+++.+.....+...
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 138 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKDF 138 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHHH
Confidence 6788999999999999999988776665543
No 50
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=81.90 E-value=9 Score=38.93 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcH--HHHH-HHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSE--WYLE-WILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~--~~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
-.+|.+.+...+..... ..++.+++++....|-+. .+.. .+++.+..|+.++..+ ..+++.+...+++.+++.
T Consensus 200 V~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTI 275 (539)
T ss_dssp EEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeE
Confidence 45888888776655443 347899999888887653 3333 5788899999988764 567888999999999999
Q ss_pred EEecCCchhhHHHHh---hhccCcceeeeecCC
Q 008491 108 LVTDESSDSWYLELQ---HTAIPSLRWHVSLGS 137 (564)
Q Consensus 108 il~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 137 (564)
+...+.....+.... ...+++++.+++-+.
T Consensus 276 ~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 276 TALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp EEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred EEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 998887665554432 224566666665553
No 51
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=81.37 E-value=18 Score=36.97 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHH---h-cCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEcc
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAI---V-GYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 244 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 244 (564)
.|+.+|++.... .| ....+|++.+...+...... . ++++++++....+....+ +..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 466777665321 11 23578998887666655554 3 778999999888866433 456788999999988887
Q ss_pred C-CChHHHHHHHHhccceEEEechHHHHHHHH
Q 008491 245 K-FESKSALEAVEQHCVTSLITVPAIMADLAT 275 (564)
Q Consensus 245 ~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 275 (564)
+ ...+.+...++..++..+++.+.....+..
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 162 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVDT 162 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHHH
Confidence 6 678899999999999999998877665543
No 52
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=81.19 E-value=8.5 Score=36.71 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcCCeEEEEeC------CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcH-HHHHHHHHHHhhCc
Q 008491 10 CQCLSRIAAVKRNSVVTITG------NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSE-WYLEWILAVAFIGG 82 (564)
Q Consensus 10 ~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~-~~~~~~lA~~~~G~ 82 (564)
.+.+.++....|--+.++.+ +-.+|.+.+...+...+.. .+++++|++..++|-+. -.+..++..+..|+
T Consensus 28 ~~~~~~w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~ 104 (358)
T 4gs5_A 28 YDFMEKWLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDW 104 (358)
T ss_dssp HHHHHHHHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred hhHhhccCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCc
Confidence 34455555555544444442 2468999887776555443 48999999998887663 33445566677888
Q ss_pred eeeecCCCCChhhHHHHHhhcCCcEEEecCCchhhHHHH--hhhccCcceeeeecCC
Q 008491 83 IVAPLNYRWSFKEASRAITSIRPVMLVTDESSDSWYLEL--QHTAIPSLRWHVSLGS 137 (564)
Q Consensus 83 ~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 137 (564)
..+..++... ....+++.+++.+...+.....+... ....+++++.+++-+.
T Consensus 105 ~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 105 ELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp EEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred EEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 8777765433 33467888999988877655444332 1223555666655543
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=80.54 E-value=18 Score=36.60 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=74.0
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.++.+|++....+ ..-.+|+..+...+..... ..++++++++....+....+ +..+++++..|+..+.+++
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4566776543211 2356889888666555554 45788999999888865433 5667889999999998876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLAT 275 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 275 (564)
...+.+...++..++..+++.+.....+..
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 135 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 135 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHHHH
Confidence 678899999999999999999887665543
No 54
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=79.89 E-value=20 Score=36.16 Aligned_cols=98 Identities=10% Similarity=-0.016 Sum_probs=73.0
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++.. + ....+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 4677776653 1 1257899888766555554 45788999999988865433 5677899999999998876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLA 274 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 274 (564)
...+.+...++..++.++++.+.....+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 67889999999999999998876655443
No 55
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=79.41 E-value=9.8 Score=38.70 Aligned_cols=104 Identities=20% Similarity=0.054 Sum_probs=73.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH--HHH-HHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEW--YLE-WILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~--~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
-.+|.+.+...+...+.. .++.++|++....|.... +.. .+++.+..|+.++..+ ...+..+...+++.+++.
T Consensus 209 v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCE
Confidence 458898888776665544 488999999988775533 332 4788889999988764 457888889999999999
Q ss_pred EEecCCchhhHHHHh---hhccCcceeeeecCCC
Q 008491 108 LVTDESSDSWYLELQ---HTAIPSLRWHVSLGSS 138 (564)
Q Consensus 108 il~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 138 (564)
+...+.....+.... ...++.++.+++-+..
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp EEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred EEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 998887665544332 2345667766665543
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=78.87 E-value=16 Score=36.94 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=72.3
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.++.+|++.. | ..+|+..+...+..... ..++++++++....+....+ +...++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4566776532 1 35888888766555554 45788999999888866533 4567889999999888776
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLAT 275 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 275 (564)
...+.+...++..++..+++.+.....+..
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 678899999999999999998877655543
No 57
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=78.63 E-value=18 Score=37.06 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=71.4
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++..... | ....+|++.+...+..... ..+++++|++...++....+ +..+++++..|+..+.+.+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 5788887765321 2 2367888888665555544 45788999999988866543 5677889999999888776
Q ss_pred -CChHHHHHHHHhccceEEEechH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPA 268 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~ 268 (564)
...+.+...++..++..+++.+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 77899999999999999988664
No 58
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=78.46 E-value=21 Score=36.40 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=70.5
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++. . .-.+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 467777653 1 246889888766555554 45788999998888866433 5567889999999988876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMAD 272 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~ 272 (564)
...+.+...++..++..+++.+.....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 678889999999999999998865543
No 59
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=77.51 E-value=21 Score=35.74 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++.. . .+..+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 4667776542 1 1356899888766555554 45788999999888866533 5667889999999988776
Q ss_pred -CChHHHHHHHHhccceEEEe--chHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLIT--VPAIMADL 273 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~--~P~~~~~l 273 (564)
...+.+...++..+++.+++ .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 67888899999999999988 66655444
No 60
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=75.93 E-value=29 Score=34.32 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHHHhcC--CCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIAIVGY--GEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK- 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~- 245 (564)
.|+.+|++.........-....+|++.+...+......+.- .+++++....+....+ +..+++++..|+..+.+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~~ 115 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSVP 115 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECSC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCCC
Confidence 57788877654321111133678999988777777665531 2789988888765433 5667889999999888764
Q ss_pred ---CChHHHHHHHHhccceEEEechHHHHHHHHH
Q 008491 246 ---FESKSALEAVEQHCVTSLITVPAIMADLATL 276 (564)
Q Consensus 246 ---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 276 (564)
...+.+...++..++..+++.+.....+...
T Consensus 116 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 4568889999999999999998877666543
No 61
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=75.20 E-value=18 Score=36.28 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=64.1
Q ss_pred eeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CChHHHHHHHHhccceEEE
Q 008491 189 VVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 264 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 264 (564)
-.+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++ ...+.+...++..++..++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 35888888766555554 44788999999888866433 5677899999999988876 6788999999999999999
Q ss_pred echHHHH
Q 008491 265 TVPAIMA 271 (564)
Q Consensus 265 ~~P~~~~ 271 (564)
+.+....
T Consensus 106 ~~~~~~~ 112 (503)
T 4fuq_A 106 CDPSKRD 112 (503)
T ss_dssp ECGGGTT
T ss_pred ECchhhH
Confidence 8876543
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.92 E-value=11 Score=38.76 Aligned_cols=104 Identities=7% Similarity=-0.057 Sum_probs=72.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHH--HHHHHHHhhCceeeecCCCC---ChhhHHHHHhhcCC
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYL--EWILAVAFIGGIVAPLNYRW---SFKEASRAITSIRP 105 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~--~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~ 105 (564)
-.+|.+.+...+...+. ..++.+++++..+.|-.-.+- ..+++.+..|+..+.+++.. .+..+...+.+.++
T Consensus 185 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~ 261 (590)
T 3kxw_A 185 VMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261 (590)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred EEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence 45899988877665544 358899999999888775443 34788899999988876532 56788889999999
Q ss_pred cEEEecCCchhhHHHH------hhhccCcceeeeecCC
Q 008491 106 VMLVTDESSDSWYLEL------QHTAIPSLRWHVSLGS 137 (564)
Q Consensus 106 ~~il~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 137 (564)
+.+...+.....+... ....+++++.+++-+.
T Consensus 262 t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 262 TISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp SEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 9988776655444332 1123455565555443
No 63
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.59 E-value=14 Score=37.51 Aligned_cols=86 Identities=13% Similarity=0.048 Sum_probs=66.8
Q ss_pred eeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CChHHHHHHHHhccceEEE
Q 008491 189 VVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 264 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 264 (564)
..+|+..+...+..... ..++++++++....+....+ +...++++..|+..+.+++ ...+++...++..++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 46888888766555554 45788999998888865433 4567889999999888776 6789999999999999999
Q ss_pred echHHHHHHHH
Q 008491 265 TVPAIMADLAT 275 (564)
Q Consensus 265 ~~P~~~~~l~~ 275 (564)
+.+.....+..
T Consensus 130 ~~~~~~~~~~~ 140 (548)
T 2d1s_A 130 SSKKGLDKVIT 140 (548)
T ss_dssp ECTTTHHHHHH
T ss_pred EcHHHHHHHHH
Confidence 98877665543
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=74.57 E-value=25 Score=36.72 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=71.2
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH----HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEcc
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA----IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIP 244 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 244 (564)
.++.+|++... ..+| ....+|++.+...+..... ..+++++|++....|..... +..+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 46778776532 2222 2356888888666555554 45678999999999876533 567789999999888876
Q ss_pred C-CChHHHHHHHHhccceEEEechHH
Q 008491 245 K-FESKSALEAVEQHCVTSLITVPAI 269 (564)
Q Consensus 245 ~-~~~~~~~~~i~~~~~t~l~~~P~~ 269 (564)
+ +..+.+...+++.++.++++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 5 788999999999999999887653
No 65
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=73.62 E-value=9.3 Score=39.69 Aligned_cols=105 Identities=12% Similarity=-0.078 Sum_probs=75.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHH-HHHHHHHHhhCceeeecC-CCCChhhHHHHHhhcCCcEE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWY-LEWILAVAFIGGIVAPLN-YRWSFKEASRAITSIRPVML 108 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~-~~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~i 108 (564)
-.+|.+.+...+. .....++.+++++....+-+.+. +..+++.+..|+.++..+ ....++.+..++++.+++.+
T Consensus 182 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 182 IACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 3578877654332 22345889999999988876443 344788888999887763 35578889999999999999
Q ss_pred EecCCchhhHHHHhhhccCcceeeeecCCCC
Q 008491 109 VTDESSDSWYLELQHTAIPSLRWHVSLGSSS 139 (564)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (564)
...+.....+.......++.++.+++-+...
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 9888877666555555677788777766543
No 66
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.57 E-value=7.8 Score=39.06 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH-HHHHHHHHHhhCceeeecCCC--CChhhHHHHHhhcCCcE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEW-YLEWILAVAFIGGIVAPLNYR--WSFKEASRAITSIRPVM 107 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 107 (564)
-.+|.+.+...+..... ..++.++|++..+.|-+.. .+..+++.+..|+..+.++.. ..++.+...+++.+++.
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 35888888766554443 3588999999998887632 244578889999999887653 46788889999999999
Q ss_pred EEecCCchhhHHHH---hhhccCcceeeeecC
Q 008491 108 LVTDESSDSWYLEL---QHTAIPSLRWHVSLG 136 (564)
Q Consensus 108 il~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 136 (564)
+...+.....+... ....++.++.+++-+
T Consensus 239 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 239 WTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp EEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred EEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 98887655433221 122344556555544
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=73.48 E-value=22 Score=36.78 Aligned_cols=104 Identities=13% Similarity=-0.022 Sum_probs=72.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc--HHHHH-HHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS--EWYLE-WILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~--~~~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
-.+|.+.+...+...... .++.+++++....+-+ .++.+ .+++++..|+.++..+ ......+...+++.+++.
T Consensus 202 V~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 458888887766555443 4789999999988854 44433 4788889999988765 456778888999999999
Q ss_pred EEecCCchhhHHHHhh-----hccCcceeeeecCCC
Q 008491 108 LVTDESSDSWYLELQH-----TAIPSLRWHVSLGSS 138 (564)
Q Consensus 108 il~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 138 (564)
+...+.....+..... ..++.++.+++-+..
T Consensus 278 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 278 TALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp EEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred EEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 9988876655543321 135566666655543
No 68
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=73.16 E-value=4.1 Score=39.10 Aligned_cols=104 Identities=11% Similarity=-0.099 Sum_probs=69.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCc--HHHHHHHHHHHhhCceeeecCCCCChh--------------
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNS--EWYLEWILAVAFIGGIVAPLNYRWSFK-------------- 94 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 94 (564)
..+|.+.+...+...++.+...|+.++|++..+.+-+ .-.+...++++..|+.+++.+ +.+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 3578888888887777777778999999999988862 233444555588898555543 3333
Q ss_pred ---------hHHHHHhhcCCcEEEecCCchhhHHHH---hhhccCcceeeeecC
Q 008491 95 ---------EASRAITSIRPVMLVTDESSDSWYLEL---QHTAIPSLRWHVSLG 136 (564)
Q Consensus 95 ---------~l~~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 136 (564)
.+..++++.++..+++.+.....+... .....+.++.+++-+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG 240 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence 666688999999999887755444322 112334555555544
No 69
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=71.35 E-value=11 Score=37.90 Aligned_cols=103 Identities=11% Similarity=-0.053 Sum_probs=70.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH-HHHHHHHHHhhCceeeecCCC--CChhhHHHHHhhcCCcE
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEW-YLEWILAVAFIGGIVAPLNYR--WSFKEASRAITSIRPVM 107 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 107 (564)
-.+|.+.+...+..++. ..++.+++++..+.|-+.. .+..+++++..|+.++.++.. ..+..+...+++.+++.
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 35888888776655443 3578899999998887633 344578889999998877543 46778888999999999
Q ss_pred EEecCCchhhHHHH---hhhccCcceeeeecC
Q 008491 108 LVTDESSDSWYLEL---QHTAIPSLRWHVSLG 136 (564)
Q Consensus 108 il~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 136 (564)
++..+.....+... ....++.++.++..+
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 98887765443322 122344555555444
No 70
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=70.89 E-value=29 Score=36.11 Aligned_cols=96 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.++.+|++.. +..+| ..-.+|++.+...+..... ..+++++|++..+.|..... +..+++++..|+..+.+.+
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 3677777643 22222 2356888888665555544 45789999999998876543 5677899999998888765
Q ss_pred -CChHHHHHHHHhccceEEEechH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPA 268 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~ 268 (564)
+.++.+...++..++.++++...
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCc
Confidence 78899999999999999887654
No 71
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=70.87 E-value=36 Score=34.71 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++. . .-.+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.+++
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 467777654 1 235889888666555554 45788999999888866533 5677899999999988876
Q ss_pred -CChHHHHHHHHhccceEEEechHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAI 269 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~ 269 (564)
...+.+...++..++..+++....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 678899999999999999887643
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=68.06 E-value=19 Score=39.81 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=73.7
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|++.. .+| -.+|++.+...+..... ..++++++++....+.... .+..+++++..|+..+.+++
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 5778887642 222 46888888665555554 4578899999999887643 35677899999999988876
Q ss_pred -CChHHHHHHHHhccceEEEechHHHHHHHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAIMADLAT 275 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 275 (564)
..++.+...++..++.++++.+.....+..
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 176 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKIKP 176 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTSHH
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHHHH
Confidence 778999999999999999998776554433
No 73
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=66.80 E-value=40 Score=33.80 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=60.4
Q ss_pred eeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CChHHHHHHHHhccceEEE
Q 008491 189 VVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLI 264 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 264 (564)
-.+|++.+...+..... ..++.+++++....+.... .+..+++++..|+..+.+++ ...+.+...++..++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 35788888666555554 4578899999888876543 35677889999999888765 6788999999999999988
Q ss_pred echH
Q 008491 265 TVPA 268 (564)
Q Consensus 265 ~~P~ 268 (564)
+...
T Consensus 107 ~~~~ 110 (521)
T 3l8c_A 107 AIEE 110 (521)
T ss_dssp ESSC
T ss_pred ecCc
Confidence 7543
No 74
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=58.89 E-value=38 Score=31.78 Aligned_cols=66 Identities=11% Similarity=-0.053 Sum_probs=50.0
Q ss_pred HHHHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 48 GLLEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 48 ~L~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
.+.+.|. ++|+.|.+....+-.-..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444554 88888756666677788888888889998887766655566677889999999999764
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.31 E-value=65 Score=27.85 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=51.9
Q ss_pred hhhhHHHHH-HHHHHhCccEEEcc-CCChHHHHHHHHhccceEEEe------chHH--HHHHHHHHhhccccCCCcccee
Q 008491 222 CHIGGLSSA-MAMLMVGACHVFIP-KFESKSALEAVEQHCVTSLIT------VPAI--MADLATLIRVKKTWKGRDSVKK 291 (564)
Q Consensus 222 ~~~~~~~~~-~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~------~P~~--~~~l~~~~~~~~~~~~~~~lr~ 291 (564)
.|..|...+ ..--..|..++.+. ...++.+.+++++++++.+.. +++. +..+.+.++.... ...++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~---~~~v~- 179 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL---RDSVK- 179 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC---GGGSE-
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC---CCCCE-
Confidence 577777543 33444666666654 478999999999999997766 2222 3444444443322 01333
Q ss_pred eeecCCCCCHHHHHHH
Q 008491 292 ILNGGGGLPSELMKEA 307 (564)
Q Consensus 292 ~~~~Ge~l~~~~~~~~ 307 (564)
+++||.+++++..+.+
T Consensus 180 v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 180 CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp EEEESSSCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHh
Confidence 7899999998765543
No 76
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=56.25 E-value=64 Score=32.68 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=65.8
Q ss_pred eeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CC-------hHHHHHHHHh
Q 008491 189 VVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FE-------SKSALEAVEQ 257 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i~~ 257 (564)
-.+|++.+...+..... ..++++++++....+....+ +..+++++..|+..+.++. .. .+.+...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 56889888766655554 45788999999988866533 5677899999999888765 33 5778888999
Q ss_pred ccceEEEechHHHHHHHHH
Q 008491 258 HCVTSLITVPAIMADLATL 276 (564)
Q Consensus 258 ~~~t~l~~~P~~~~~l~~~ 276 (564)
.++..+++.......+...
T Consensus 127 ~~~~~ii~~~~~~~~~~~~ 145 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLVNAA 145 (576)
T ss_dssp HCCSEEEECGGGHHHHHHH
T ss_pred cCCCEEEecHHHHHHHHHh
Confidence 9999999988776655443
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=55.94 E-value=1e+02 Score=31.05 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=67.2
Q ss_pred CCCCeEEEEeecCCCCCCc--ceeechHHHHHHHHHHHHH---hcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEc
Q 008491 169 APEGAVIICFTSGTTGSPK--GVVISHSALIVQSLAKIAI---VGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFI 243 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK--~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 243 (564)
.|+.+|++... +..+..+ .-.+|++.+...+...... .+. +++++....+....+ +..+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 57778876543 2222222 3568998887666655554 345 689998888866533 45678999999999888
Q ss_pred cC-CChHHHHHHHHhccceEEEechH
Q 008491 244 PK-FESKSALEAVEQHCVTSLITVPA 268 (564)
Q Consensus 244 ~~-~~~~~~~~~i~~~~~t~l~~~P~ 268 (564)
++ ...+.+...++..++..+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 76 67888889999999998876543
No 78
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.63 E-value=57 Score=30.70 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=51.0
Q ss_pred cCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 53 GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 53 gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
-+++|.+..+.....-.-..+.++|.+.|..+..+-|...++.-...++..++.+++++..
T Consensus 82 ~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3578877777888888888899999999999888878777777788899999999999754
No 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=44.10 E-value=73 Score=31.73 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=59.0
Q ss_pred eeechHHHHHHHHHHHHHhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC-CChHHHHHHHHhccceEEEech
Q 008491 189 VVISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVP 267 (564)
Q Consensus 189 v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~P 267 (564)
-.+|++.+...+......+ ..++++....+.... .+..+++++..|+..+.+++ ...+.+...++..++.++++.+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 5789999988888877655 457888877776543 35677889999999998876 6788899999999999998875
Q ss_pred H
Q 008491 268 A 268 (564)
Q Consensus 268 ~ 268 (564)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 4
No 80
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=44.08 E-value=45 Score=22.75 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhhcCCeEEEEeCCccccHHHHHHH
Q 008491 7 AHICQCLSRIAAVKRNSVVTITGNRHNTGQQFVQD 41 (564)
Q Consensus 7 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~ 41 (564)
..|...|......+|+...++..++..+|+.+.+-
T Consensus 30 ~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~v 64 (74)
T 2jwk_A 30 EMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKA 64 (74)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHH
Confidence 45566666666667777777777777777665543
No 81
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=42.65 E-value=68 Score=29.99 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=52.1
Q ss_pred cccHHHHHHHHH--HHH-HHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEE
Q 008491 32 HNTGQQFVQDVL--NLA-RGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108 (564)
Q Consensus 32 ~~Ty~el~~~~~--~~a-~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 108 (564)
.+++.+...... ..| +.|+..++++|++|+|....+.-.+.+++|....|+.++-++.+ . +-..++++.+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~-~r~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--Q-DKLNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--H-HHHHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--H-HHhhhhhhcCCeEE
Confidence 466666433322 222 33556799999999999987787777777777778877766543 2 33467778888887
Q ss_pred EecC
Q 008491 109 VTDE 112 (564)
Q Consensus 109 l~~~ 112 (564)
+...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7543
No 82
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=37.85 E-value=1.3e+02 Score=27.76 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHhc-CCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIG-LRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~g-v~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.| +++|....+....+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34455 356644444566677777777888899998887766555556667888999999998764
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=36.87 E-value=1.6e+02 Score=33.47 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCCCeEEEEeecCCCCCCcceeechHHHHHHHHHHHH---HhcCCCCceEEEecCchhhhHHHHHHHHHHhCccEEEccC
Q 008491 169 APEGAVIICFTSGTTGSPKGVVISHSALIVQSLAKIA---IVGYGEDDVYLHTAPLCHIGGLSSAMAMLMVGACHVFIPK 245 (564)
Q Consensus 169 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 245 (564)
.|+.+|.+. . .-.+|++.+...+..... ..+.++++++..+.+-...+ +..+++++..|+..+.+++
T Consensus 477 ~p~~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vv~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALTY-S--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL-VIGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEES-S--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEE-C--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEECC
Confidence 467777642 1 135888888666555554 45788999999888865433 5677899999999998876
Q ss_pred -CChHHHHHHHHhccceEEEechHH
Q 008491 246 -FESKSALEAVEQHCVTSLITVPAI 269 (564)
Q Consensus 246 -~~~~~~~~~i~~~~~t~l~~~P~~ 269 (564)
...+.+...++..++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 567888888999999999887654
No 84
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=36.08 E-value=1.4e+02 Score=28.93 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=48.4
Q ss_pred HHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecC
Q 008491 50 LEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDE 112 (564)
Q Consensus 50 ~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 112 (564)
.+.|. ++|....+....+-.-....++|.+.|..++.+-|......-...++..++.+++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 6775555666668888888888999999888776766566667788999999999975
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=33.60 E-value=1.9e+02 Score=26.47 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred HHHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344454 56666655 55566666677777899998887766554455667788999999999864
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=31.29 E-value=2.1e+02 Score=26.14 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=44.6
Q ss_pred HHHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334454 56665544 55566666777778889998877666554455566788999999999864
No 87
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=31.19 E-value=2.1e+02 Score=26.63 Aligned_cols=64 Identities=14% Similarity=0.017 Sum_probs=44.5
Q ss_pred HHHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.|. ++|+.|..... +-.-..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344454 67776655544 66666666777789988877766555556667888999999998864
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.61 E-value=1.5e+02 Score=27.43 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=39.4
Q ss_pred cCCCCCEEEEEcCCcH------HHHHHHHHH-HhhCceeeecCCCC------------ChhhHHHHHhhcCCcEEEecCC
Q 008491 53 GLRSGDIVAISALNSE------WYLEWILAV-AFIGGIVAPLNYRW------------SFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 53 gv~~g~~V~l~~~~~~------~~~~~~lA~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~il~~~~ 113 (564)
-+++||+|+|++|.+. +-+-..... -..|..++.-+.-. .++++..++.+-.+++|+|...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4689999999999752 222222222 34477776543221 1455666777778888888766
Q ss_pred chh
Q 008491 114 SDS 116 (564)
Q Consensus 114 ~~~ 116 (564)
.+.
T Consensus 88 G~g 90 (327)
T 4h1h_A 88 GFN 90 (327)
T ss_dssp CSC
T ss_pred chh
Confidence 543
No 89
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=29.00 E-value=1.8e+02 Score=27.12 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=39.6
Q ss_pred cCCCCCEEEEEcCCcH------HHHHHHHHHH-hhCceeeecCCCC------------ChhhHHHHHhhcCCcEEEecCC
Q 008491 53 GLRSGDIVAISALNSE------WYLEWILAVA-FIGGIVAPLNYRW------------SFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 53 gv~~g~~V~l~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~il~~~~ 113 (564)
-+++||+|+|++|.+. +-+-.....+ ..|..++.-.... .++++...+.+-.+++|+|...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999883 2222233333 3588776532111 1455666677777888888766
Q ss_pred chh
Q 008491 114 SDS 116 (564)
Q Consensus 114 ~~~ 116 (564)
.+.
T Consensus 89 G~g 91 (336)
T 3sr3_A 89 GMN 91 (336)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
No 90
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=28.56 E-value=2.5e+02 Score=25.87 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=46.3
Q ss_pred HHHhc-CCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIG-LRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~g-v~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.| +++++.|... ..+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4667766554 4566667777788888998887766665566677889999999999864
No 91
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=28.30 E-value=3.4e+02 Score=24.60 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHhc-CCCCC--EEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIG-LRSGD--IVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~g-v~~g~--~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 45666 4443 45556666677778899998877666554556667888899999999865
No 92
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.17 E-value=1.7e+02 Score=27.66 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=40.0
Q ss_pred cCCCCCEEEEEcCCcH------HHHHHHHHHH-hhCceeeecCCCC------------ChhhHHHHHhhcCCcEEEecCC
Q 008491 53 GLRSGDIVAISALNSE------WYLEWILAVA-FIGGIVAPLNYRW------------SFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 53 gv~~g~~V~l~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~il~~~~ 113 (564)
-+++||+|+|++|.+. +-+-.....+ ..|..++.-+... .++++...+.+-.+++|+|...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5789999999999873 2222223333 3588877543221 1455666667677788888766
Q ss_pred chh
Q 008491 114 SDS 116 (564)
Q Consensus 114 ~~~ 116 (564)
.+.
T Consensus 119 Gyg 121 (371)
T 3tla_A 119 GDN 121 (371)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
No 93
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=27.99 E-value=1.4e+02 Score=27.92 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHH--H-HHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEE
Q 008491 32 HNTGQQFVQDVLN--L-ARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108 (564)
Q Consensus 32 ~~Ty~el~~~~~~--~-a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 108 (564)
.+++.+....... . -+.|.+.++++|++|+|.....+-.+++.+|- ..|+.++.+..+. +.+ .++++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCee
Confidence 4666665422111 1 23455668999999999987556777666665 5688777665442 333 35667888888
Q ss_pred E
Q 008491 109 V 109 (564)
Q Consensus 109 l 109 (564)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 94
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=27.93 E-value=1.2e+02 Score=28.42 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=41.6
Q ss_pred EEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCch
Q 008491 61 AISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSD 115 (564)
Q Consensus 61 ~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~ 115 (564)
.+....+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++....
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 3334456667777788999999888776766666667888999999999987643
No 95
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=27.70 E-value=1.8e+02 Score=27.19 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=42.8
Q ss_pred HHHH--hcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecC
Q 008491 48 GLLE--IGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDE 112 (564)
Q Consensus 48 ~L~~--~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 112 (564)
.|.+ .++++|++|+|.....+-.+++.+|-...|+.++.+..+ .+. ..++++.+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEK-LKLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHH-HHHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHH-HHHHHHhCCCEEEecc
Confidence 4555 689999999999996677777777765438876655433 333 3455678888877543
No 96
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=27.45 E-value=1.7e+02 Score=27.65 Aligned_cols=58 Identities=9% Similarity=-0.090 Sum_probs=43.2
Q ss_pred EEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchh
Q 008491 59 IVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDS 116 (564)
Q Consensus 59 ~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 116 (564)
...+....+-.-..+.++|.+.|..++.+-|..........++..++.+++++....+
T Consensus 94 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 94 AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 3444455566777777888899998887767666667778889999999999875443
No 97
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=26.96 E-value=1.7e+02 Score=27.45 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecC
Q 008491 48 GLLEIGLR-SGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDE 112 (564)
Q Consensus 48 ~L~~~gv~-~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 112 (564)
.|.+.+++ +|++|+|.....+-..++.+|-. .|+.++.+..+ .+.+..+.++.+++.++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 35566888 99999999976677777776654 68876655443 34444445578887776543
No 98
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=26.93 E-value=1.6e+02 Score=27.21 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=49.3
Q ss_pred cccHHHHHHHHH--HH-HHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEE
Q 008491 32 HNTGQQFVQDVL--NL-ARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVML 108 (564)
Q Consensus 32 ~~Ty~el~~~~~--~~-a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 108 (564)
.+++.+...... .. -+.|...++++|++|+|.....+-.+++.+|- ..|+.++.+..+ .+. ..++++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDID--DAK-LNLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--HHH-HHHHHHcCCCEE
Confidence 466666542211 11 23455568999999999988667777766665 468877666443 333 446677888887
Q ss_pred EecC
Q 008491 109 VTDE 112 (564)
Q Consensus 109 l~~~ 112 (564)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 99
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=26.21 E-value=1.8e+02 Score=26.97 Aligned_cols=78 Identities=6% Similarity=-0.072 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHH---HHHHHHHh--cCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcE
Q 008491 33 NTGQQFVQDVLN---LARGLLEI--GLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 33 ~Ty~el~~~~~~---~a~~L~~~--gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
+++.+....... .-+.|.+. ++++|++|+|.....+-.+++.+|-..-|+.++.++.+ . +-..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~-~~~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--D-DRLALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--H-HHHHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--H-HHHHHHHHcCCCE
Confidence 677665433221 12334443 79999999999986677777777766646666666433 3 3345667888888
Q ss_pred EEecCC
Q 008491 108 LVTDES 113 (564)
Q Consensus 108 il~~~~ 113 (564)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776543
No 100
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=25.68 E-value=2.2e+02 Score=21.70 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecC--CCCChhhHH
Q 008491 45 LARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLN--YRWSFKEAS 97 (564)
Q Consensus 45 ~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~--~~~~~~~l~ 97 (564)
.+.+|.+.|+.++..+.+-..+..+.+-++-=++++|...+.+- +..+....+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~R 100 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 100 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 35668888999998888888888899999999999987555442 455544433
No 101
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=25.37 E-value=1.8e+02 Score=26.66 Aligned_cols=76 Identities=18% Similarity=0.079 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHH--HH-HHHHHhcCCCCCEEEEEc-CCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcE
Q 008491 32 HNTGQQFVQDVLN--LA-RGLLEIGLRSGDIVAISA-LNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 32 ~~Ty~el~~~~~~--~a-~~L~~~gv~~g~~V~l~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
.+++.+..-.... .| +.|...++++|++|+|.. ...+-..++.+|- ..|+.++.+. +.+. ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4666665433222 22 334556899999999996 5557777666665 5688766553 3444 56777888887
Q ss_pred EEecC
Q 008491 108 LVTDE 112 (564)
Q Consensus 108 il~~~ 112 (564)
++...
T Consensus 200 ~i~~~ 204 (321)
T 3tqh_A 200 CINYH 204 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 76543
No 102
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=25.19 E-value=3.6e+02 Score=25.23 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCc-eeeecCCCCChhhHHHHHhhcCCcEEEe
Q 008491 48 GLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGG-IVAPLNYRWSFKEASRAITSIRPVMLVT 110 (564)
Q Consensus 48 ~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~il~ 110 (564)
.|...++++|++|+|.....+-.+++.+|- ..|+ .++.++.+ . +-..++++.+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~-~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--A-TKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--H-HHHHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--H-HHHHHHHHcCCCEEEC
Confidence 455678999999999988556666666655 5787 56655433 3 3345677788887764
No 103
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=24.07 E-value=1.8e+02 Score=20.08 Aligned_cols=46 Identities=7% Similarity=-0.124 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce
Q 008491 31 RHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI 83 (564)
Q Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~ 83 (564)
..+.+.++.+ .+.+.++.+++.|.++|........+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4566666543 345557788889999998888777777777777864
No 104
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=23.99 E-value=2.1e+02 Score=26.96 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEec
Q 008491 47 RGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTD 111 (564)
Q Consensus 47 ~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~ 111 (564)
..|.+.++++|++|+|.....+-.+++.+|- ..|+.++.+..+ .+.+ ..+++.+++.++..
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~~--~~~~-~~a~~lGa~~vi~~ 245 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTS--EAKR-EAAKALGADEVVNS 245 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESS--GGGH-HHHHHHTCSEEEET
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHH-HHHHHcCCcEEecc
Confidence 3455568999999999988666777666665 458875555433 3333 34556788776643
No 105
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=23.90 E-value=3.9e+02 Score=23.88 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=43.6
Q ss_pred cccHHHH-HHHHHHHHHHHHHhc-CCCCCEEEEEcCCcHHHHHHHHHHHhhC-------------ceeeecCCCC--Chh
Q 008491 32 HNTGQQF-VQDVLNLARGLLEIG-LRSGDIVAISALNSEWYLEWILAVAFIG-------------GIVAPLNYRW--SFK 94 (564)
Q Consensus 32 ~~Ty~el-~~~~~~~a~~L~~~g-v~~g~~V~l~~~~~~~~~~~~lA~~~~G-------------~~~v~l~~~~--~~~ 94 (564)
.+++.+. .+.+..+..++++.| . ..|.+-++-++|+.++..-|.+++ ...+.++... +.+
T Consensus 16 ~~~~~~~i~~~~~~L~~~l~~~g~~---~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~ 92 (275)
T 1wxi_A 16 QINAEEEIRRSVDFLKSYLQTYPFI---KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQ 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC---CCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHH
Confidence 4566654 344555555665555 3 368888998999977765555542 3344444221 234
Q ss_pred hHHHHHhhcCC-cEEEec
Q 008491 95 EASRAITSIRP-VMLVTD 111 (564)
Q Consensus 95 ~l~~~l~~~~~-~~il~~ 111 (564)
+...+.+..++ ...+++
T Consensus 93 dA~~va~~lgi~~~~~i~ 110 (275)
T 1wxi_A 93 DCQDAIAFIQPDRVLTVN 110 (275)
T ss_dssp HHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCCeEEEEe
Confidence 45556666666 454443
No 106
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.79 E-value=2.1e+02 Score=26.63 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=40.1
Q ss_pred cCCCCCEEEEEcCCcH------HHHHHHHHHH-hhCceeeecCCCC------------ChhhHHHHHhhcCCcEEEecCC
Q 008491 53 GLRSGDIVAISALNSE------WYLEWILAVA-FIGGIVAPLNYRW------------SFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 53 gv~~g~~V~l~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~il~~~~ 113 (564)
-+++||+|+|++|.+. +-+-.....+ ..|..++.-+... .++++...+.+-.+++|+|...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 3689999999999873 2222233333 3588777543221 1455666777777888888766
Q ss_pred chh
Q 008491 114 SDS 116 (564)
Q Consensus 114 ~~~ 116 (564)
.+.
T Consensus 88 G~g 90 (331)
T 4e5s_A 88 GYN 90 (331)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
No 107
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.48 E-value=4.3e+02 Score=24.14 Aligned_cols=72 Identities=8% Similarity=-0.104 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCcHHHHHHHHHHHhh----C---ceeeecCCCCC------hhhHHHHHhhcCCcE
Q 008491 42 VLNLARGLLEIG-LRSGDIVAISALNSEWYLEWILAVAFI----G---GIVAPLNYRWS------FKEASRAITSIRPVM 107 (564)
Q Consensus 42 ~~~~a~~L~~~g-v~~g~~V~l~~~~~~~~~~~~lA~~~~----G---~~~v~l~~~~~------~~~l~~~l~~~~~~~ 107 (564)
..++.+.+.+.+ +.++++|++..+-+.|+.+++..+... | ..++.+++... .+....+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 345666676654 578999999999999999888877764 4 44566666553 122455666777777
Q ss_pred EEecCC
Q 008491 108 LVTDES 113 (564)
Q Consensus 108 il~~~~ 113 (564)
.+.+-+
T Consensus 88 ~v~~~~ 93 (317)
T 1wy5_A 88 FVGKED 93 (317)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 666543
No 108
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.31 E-value=63 Score=29.04 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCC
Q 008491 43 LNLARGLLEIGLRSGDIVAISALN 66 (564)
Q Consensus 43 ~~~a~~L~~~gv~~g~~V~l~~~~ 66 (564)
..+.+.|+++||++||.|.+.++=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 345666999999999999998874
No 109
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=22.48 E-value=2.5e+02 Score=26.21 Aligned_cols=78 Identities=18% Similarity=0.033 Sum_probs=47.6
Q ss_pred cccHHHHHHH--HHHHHH-HHHH-hcCCCCCEEEEEcC-CcHHHHHHHHHHHhhCceee-ecCCCCChhhHHHHHhhcCC
Q 008491 32 HNTGQQFVQD--VLNLAR-GLLE-IGLRSGDIVAISAL-NSEWYLEWILAVAFIGGIVA-PLNYRWSFKEASRAITSIRP 105 (564)
Q Consensus 32 ~~Ty~el~~~--~~~~a~-~L~~-~gv~~g~~V~l~~~-~~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~ 105 (564)
.+++.+.... .-..|. .|.+ .++++|++|+|... ..+-.+++.+|- ..|+..+ ..+..-..++...++++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 4677664432 112332 3444 48999999999997 457777666665 4687544 33333333344566778888
Q ss_pred cEEEe
Q 008491 106 VMLVT 110 (564)
Q Consensus 106 ~~il~ 110 (564)
+.++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 88775
No 110
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=22.00 E-value=1.7e+02 Score=27.34 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=47.7
Q ss_pred cccHHHHHHH--HHHHH-HHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCc-eeeecCCCCChhhHHHHHhhcCCcE
Q 008491 32 HNTGQQFVQD--VLNLA-RGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGG-IVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 32 ~~Ty~el~~~--~~~~a-~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
.+++.+..-. ....| +.+...++++|++|+|...-.+-.+.+.+|- ..|+ .++.++.+ ++-..++++.+++.
T Consensus 139 ~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~---~~~~~~~~~lGa~~ 214 (352)
T 3fpc_A 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR---KHCCDIALEYGATD 214 (352)
T ss_dssp TSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC---HHHHHHHHHHTCCE
T ss_pred CCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC---HHHHHHHHHhCCce
Confidence 4666665322 11122 3355668999999999987556776666664 5787 56655433 33345777788887
Q ss_pred EEec
Q 008491 108 LVTD 111 (564)
Q Consensus 108 il~~ 111 (564)
++..
T Consensus 215 vi~~ 218 (352)
T 3fpc_A 215 IINY 218 (352)
T ss_dssp EECG
T ss_pred EEcC
Confidence 7653
No 111
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.98 E-value=2.8e+02 Score=25.94 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecC
Q 008491 48 GLLEIGLR-SGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDE 112 (564)
Q Consensus 48 ~L~~~gv~-~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 112 (564)
.|.+.+++ +|++|+|.....+-..++.+|- ..|+.++.+..+ .+.+..+.++.+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVISTS--PSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESC--GGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHHHHHHhcCCceEEecc
Confidence 45566888 9999999997667777666665 568876555433 45555555578887766433
No 112
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=21.83 E-value=2.3e+02 Score=24.95 Aligned_cols=68 Identities=9% Similarity=-0.114 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhC----ceeeecCCCCC--hhhHHHHHhhcCCcEEEecC
Q 008491 42 VLNLARGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIG----GIVAPLNYRWS--FKEASRAITSIRPVMLVTDE 112 (564)
Q Consensus 42 ~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G----~~~v~l~~~~~--~~~l~~~l~~~~~~~il~~~ 112 (564)
.+++..+|++. .++.|++..+-+.|+.+++.-+.+++ ...+.++...+ .+....+.+..++.+.+++-
T Consensus 10 ~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~i 83 (257)
T 2e18_A 10 IERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINI 83 (257)
T ss_dssp HHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEC
Confidence 34566667666 35679999999999988777776664 33444544333 22344455667776666553
No 113
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.83 E-value=2.5e+02 Score=25.77 Aligned_cols=58 Identities=7% Similarity=-0.102 Sum_probs=41.3
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCch
Q 008491 57 GDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSD 115 (564)
Q Consensus 57 g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~ 115 (564)
++.|.. ...+-.-..+.++|.+.|..++.+-|..........++..++.+++++....
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~ 111 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWD 111 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHH
Confidence 344444 4446666667778889999888776655556667788899999999887543
No 114
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=21.68 E-value=3.5e+02 Score=24.66 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHhcC-CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 49 LLEIGL-RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 49 L~~~gv-~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
+.+.|. ++|+.|... ..+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 53 a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 566655444 4566666677778899998877666555556667888999999998864
No 115
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.38 E-value=73 Score=28.90 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=23.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 008491 30 NRHNTGQQFVQDVLNLARGLLEIGLRSGDIVAISALN 66 (564)
Q Consensus 30 ~~~~Ty~el~~~~~~~a~~L~~~gv~~g~~V~l~~~~ 66 (564)
.+.+|-.+|.+ .|+++||++||.|.+.++=
T Consensus 19 ~~~~T~~~L~~-------~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDRLAS-------DLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHHHHH-------HHHHHTCCTTCEEEEEECS
T ss_pred CCCcCHHHHHH-------HHHHcCCCCCCEEEEEech
Confidence 45677666554 5999999999999998763
No 116
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=21.35 E-value=72 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCC
Q 008491 45 LARGLLEIGLRSGDIVAISALN 66 (564)
Q Consensus 45 ~a~~L~~~gv~~g~~V~l~~~~ 66 (564)
+.+.|+++||++||.|.+.++=
T Consensus 18 L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHcCCCCCCEEEEEech
Confidence 5566999999999999998873
No 117
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=21.26 E-value=5.1e+02 Score=24.30 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCC--C--ChhhHHHHHhhcCCcEEEec
Q 008491 55 RSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYR--W--SFKEASRAITSIRPVMLVTD 111 (564)
Q Consensus 55 ~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~--~~~~l~~~l~~~~~~~il~~ 111 (564)
++||.|.+..+....+..++..+-..|+.++.++.. . ..+.+...+.. +++++++.
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 170 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIM 170 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECC
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEe
Confidence 568888877766666555444445567766655432 2 45666666654 45565554
No 118
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=21.15 E-value=2e+02 Score=27.18 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=36.1
Q ss_pred HHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCC-----CChhhHHHHHhhcC--CcEEEe
Q 008491 49 LLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGIVAPLNYR-----WSFKEASRAITSIR--PVMLVT 110 (564)
Q Consensus 49 L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~il~ 110 (564)
|...++++||.|.+-.+....+ .-++...|+.++.++.. ...+.+...+...+ .++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 4445788999888766655443 33456778877666532 35677777663333 556653
No 119
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.50 E-value=4e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=14.9
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhhCceeeec
Q 008491 55 RSGDIVAISALNSEWYLEWILAVAFIGGIVAPL 87 (564)
Q Consensus 55 ~~g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l 87 (564)
++||.|.+..+....+.-.+..+-..|+.++.+
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYI 118 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 445655555444444433333333345544444
No 120
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.20 E-value=5.1e+02 Score=23.94 Aligned_cols=75 Identities=12% Similarity=0.051 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHH--H-HHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCc-eeeecCCCCChhhHHHHHhhcCCcE
Q 008491 32 HNTGQQFVQDVLNL--A-RGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGG-IVAPLNYRWSFKEASRAITSIRPVM 107 (564)
Q Consensus 32 ~~Ty~el~~~~~~~--a-~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 107 (564)
.+++.+..- ..-+ | ..|...++++|++|+|.....+-..++.+|- ..|+ .++.++.+ .+ -..++++.+++.
T Consensus 145 ~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~-~~~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--AT-RLSKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HH-HHHHHHHTTCSE
T ss_pred CCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HH-HHHHHHHhCCCE
Confidence 467766432 1222 2 2345568999999999997557777766665 4687 55555432 33 334566788887
Q ss_pred EEec
Q 008491 108 LVTD 111 (564)
Q Consensus 108 il~~ 111 (564)
++..
T Consensus 220 vi~~ 223 (356)
T 1pl8_A 220 VLQI 223 (356)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6653
No 121
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=20.20 E-value=4.9e+02 Score=23.80 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCCEEEEEcCCcHHHHHHHHHHHhhCce-eeecCCCCChhhHHHHHhhcCCcEEEecCC
Q 008491 47 RGLLEIGLRSGDIVAISALNSEWYLEWILAVAFIGGI-VAPLNYRWSFKEASRAITSIRPVMLVTDES 113 (564)
Q Consensus 47 ~~L~~~gv~~g~~V~l~~~~~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~il~~~~ 113 (564)
..+...++++|++|++...-+.-.+.+++|- ..|+. .+.++.+ ++-..++++.+++.++...+
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~~---~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDIS---SEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC---HHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEech---HHHHHHHHHcCCeEEEeCCC
Confidence 3445568999999999988666666655554 45554 3444332 33346778889988876543
No 122
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=20.10 E-value=2.7e+02 Score=26.35 Aligned_cols=59 Identities=8% Similarity=-0.105 Sum_probs=41.9
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhhCceeeecCCCCChhhHHHHHhhcCCcEEEecCCchh
Q 008491 57 GDIVAISALNSEWYLEWILAVAFIGGIVAPLNYRWSFKEASRAITSIRPVMLVTDESSDS 116 (564)
Q Consensus 57 g~~V~l~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 116 (564)
++.| +....+-.-..+.++|.+.|..++.+-|......-...++..++.+++++....+
T Consensus 93 ~~~v-v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 151 (372)
T 1p5j_A 93 CAHF-VCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDE 151 (372)
T ss_dssp CCEE-EECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHH
T ss_pred CCEE-EEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 3444 4444466666677788899998887766655566677889999999999875433
Done!