Query 008492
Match_columns 563
No_of_seqs 275 out of 883
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrl_A Endonuclease-like prote 98.9 1.3E-08 4.3E-13 87.6 11.8 93 444-543 4-99 (104)
2 3r3p_A MobIle intron protein; 98.7 5.3E-08 1.8E-12 83.8 10.9 97 445-548 6-103 (105)
3 1vsr_A Protein (VSR endonuclea 98.3 2.7E-06 9.1E-11 76.2 10.0 75 451-525 8-99 (136)
4 1cw0_A Protein (DNA mismatch e 98.3 1.4E-06 4.9E-11 79.6 8.2 81 445-525 21-118 (155)
5 3ul1_B Importin subunit alpha- 93.0 3.7 0.00013 43.9 18.4 146 204-379 202-355 (510)
6 4b8j_A Importin subunit alpha- 90.4 15 0.00053 38.7 19.7 111 194-304 162-280 (528)
7 1m0d_A Endonuclease, endodeoxy 87.4 0.62 2.1E-05 41.0 4.8 45 444-489 5-58 (138)
8 3tpo_A Importin subunit alpha- 82.8 34 0.0012 36.4 17.1 135 158-304 138-287 (529)
9 3tpo_A Importin subunit alpha- 74.4 78 0.0027 33.4 16.7 99 204-302 221-327 (529)
10 3ul1_B Importin subunit alpha- 69.5 1.2E+02 0.004 32.0 22.3 193 80-304 59-268 (510)
11 1oyz_A Hypothetical protein YI 68.4 81 0.0028 29.8 17.7 96 204-308 103-199 (280)
12 1y14_A B32, RPB4, DNA-directed 67.7 42 0.0014 31.0 10.7 14 204-217 168-181 (187)
13 4b8j_A Importin subunit alpha- 65.6 1.3E+02 0.0044 31.4 15.9 105 198-302 208-320 (528)
14 1oyz_A Hypothetical protein YI 53.9 1.4E+02 0.005 27.9 18.5 95 200-297 62-157 (280)
15 3hou_D DNA-directed RNA polyme 52.8 23 0.00079 33.4 6.1 27 90-116 113-139 (221)
16 1wa5_B Importin alpha subunit; 52.2 2.2E+02 0.0076 29.6 20.5 107 197-303 220-334 (530)
17 4db8_A Armadillo-repeat protei 41.1 2.1E+02 0.0071 26.0 13.6 111 194-304 98-216 (252)
18 4db8_A Armadillo-repeat protei 35.9 2.5E+02 0.0086 25.5 18.3 111 193-303 55-173 (252)
19 2nyt_A Probable C->U-editing e 35.7 37 0.0013 31.5 4.7 38 507-547 132-190 (190)
20 4hxt_A De novo protein OR329; 35.5 2.5E+02 0.0084 25.2 17.4 110 193-302 45-162 (252)
21 4db6_A Armadillo repeat protei 34.4 2.4E+02 0.0082 24.8 13.5 110 193-302 55-172 (210)
22 2byk_A Chrac-16; nucleosome sl 33.3 6.8 0.00023 34.7 -0.8 7 24-30 92-98 (140)
23 1914_A Signal recognition part 32.5 10 0.00035 36.4 0.2 15 26-40 109-123 (232)
24 4db6_A Armadillo repeat protei 32.0 2.6E+02 0.009 24.5 16.5 107 198-304 18-132 (210)
25 3hou_D DNA-directed RNA polyme 30.6 66 0.0023 30.4 5.4 33 78-115 124-156 (221)
26 2vgl_B AP-2 complex subunit be 29.0 5.5E+02 0.019 27.3 16.7 105 192-296 160-267 (591)
27 2jdq_A Importin alpha-1 subuni 27.0 4.7E+02 0.016 25.8 14.6 111 193-303 193-311 (450)
28 4fdd_A Transportin-1; heat rep 26.9 3.2E+02 0.011 30.4 11.6 223 53-295 320-555 (852)
29 3tj5_B Metavinculin, SCA-famil 26.8 15 0.00053 22.7 0.3 14 17-30 10-23 (27)
30 1xqr_A HSPBP1 protein; armadil 26.8 3.1E+02 0.011 26.7 10.1 103 190-295 126-236 (296)
31 1xqr_A HSPBP1 protein; armadil 26.3 4.5E+02 0.015 25.5 11.3 103 200-302 90-201 (296)
32 3fnr_A Arginyl-tRNA synthetase 25.7 71 0.0024 33.8 5.4 40 478-522 28-75 (464)
No 1
>3hrl_A Endonuclease-like protein; structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}
Probab=98.89 E-value=1.3e-08 Score=87.61 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHh---cCCcceeeccccceeeeEeeCCCceEEEEcCCCCcccCCCCCccchHHHHHHHHHCCCEEEEE
Q 008492 444 TSSFQKEVARLLVS---TGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSL 520 (563)
Q Consensus 444 ~S~lq~~V~~~L~~---lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~Hf~~ns~~~lG~t~lK~RlL~~~Gy~Vv~V 520 (563)
.|+.-..+...|+. .|+.+...+.+++|.+|++.++.++||||||.+|.... .....|.+.|+..||.|+++
T Consensus 4 ~T~~E~~l~~~Lr~~~~~G~~fr~q~~i~~~~~Df~~~~~rl~IE~DG~~H~~~~-----~~D~~R~~~L~~~Gw~VlR~ 78 (104)
T 3hrl_A 4 MSEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQA-----VYDHARTVYLNSLGFTVLRF 78 (104)
T ss_dssp CCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEEEETTTTEEEEEEC------------CCCHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcEEEeecccCCcEEeEEecCCCEEEEEECcccCChH-----HHHHHHHHHHHhCcCEEEEE
Confidence 45666777788888 68888888888999999999999999999999887532 45999999999999999999
Q ss_pred ehhhHHhhcChHHHHHHHHHHHH
Q 008492 521 SHQEWEELQGSFEQLDYLRVILK 543 (563)
Q Consensus 521 py~EW~~l~~~~ek~~YLr~~L~ 543 (563)
.+.++. .+.+.-++-++..|.
T Consensus 79 ~~~dv~--~~~~~v~~~I~~~l~ 99 (104)
T 3hrl_A 79 WNHEIL--QQTNDVLAEILRVLQ 99 (104)
T ss_dssp EHHHHH--HCHHHHHHHHHHHHH
T ss_pred EHHHHh--hCHHHHHHHHHHHHh
Confidence 988864 232344444554443
No 2
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=98.75 E-value=5.3e-08 Score=83.76 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHhcCCcceeeccccceeeeEeeCCCceEEEEcCCC-CcccCCCCCccchHHHHHHHHHCCCEEEEEehh
Q 008492 445 SSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT-HFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQ 523 (563)
Q Consensus 445 S~lq~~V~~~L~~lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~-Hf~~ns~~~lG~t~lK~RlL~~~Gy~Vv~Vpy~ 523 (563)
|+.-..+-..|...|+.+..... .+|.+||+.++.|+||||||.. |.+. ...-.+.-|.+.|+..||+|+.+...
T Consensus 6 T~~E~~l~~~L~~~G~rfr~q~~-~~~~~Df~~~~~rl~IevDG~~wH~~~---~~~~rD~~r~~~L~~~Gw~Vlr~~~~ 81 (105)
T 3r3p_A 6 TTPERRVKEILDEMDIVYFTHHV-VEGWNVAFYLGKKLAIEVNGVYWASKQ---KNVNKDKRKLSELHSKGYRVLTIEDD 81 (105)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEE-ETTEEEEEEEETTEEEEEECSCCTTCC---CCHHHHHHHHHHHHHTTCEEEEEEGG
T ss_pred CHHHHHHHHHHHHCCCccEecCC-CCCeEEEEECCCCEEEEecCcccCCCc---hHHHHHHHHHHHHHHCCCEEEEEeHH
Confidence 34455667788889999887777 7899999999999999999999 8763 33346889999999999999999887
Q ss_pred hHHhhcChHHHHHHHHHHHHHHhcc
Q 008492 524 EWEELQGSFEQLDYLRVILKDYIGG 548 (563)
Q Consensus 524 EW~~l~~~~ek~~YLr~~L~~~~~~ 548 (563)
|. .+.+.-++-|+..|...++.
T Consensus 82 ~v---~~~~~v~~~I~~~l~~~~~~ 103 (105)
T 3r3p_A 82 EL---NDIDKVKQQIQKFWVTHISN 103 (105)
T ss_dssp GG---GGHHHHHHHHHHHHHHHHC-
T ss_pred Hh---CCHHHHHHHHHHHHHHhhcc
Confidence 76 33345566666666665554
No 3
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=98.30 E-value=2.7e-06 Score=76.23 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=58.4
Q ss_pred HHHHHHhcCCcceeeccccceeeeEeeCCCceEEEEcCCC---CcccCCCCC--------------ccchHHHHHHHHHC
Q 008492 451 VARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGVP--------------LGHTMLKRRYIAAA 513 (563)
Q Consensus 451 V~~~L~~lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~---Hf~~ns~~~--------------lG~t~lK~RlL~~~ 513 (563)
|-+.|.+.|+.+...+.+.+|.+||+.++.|+||||||-. |.|.....| .-...-+...|+.+
T Consensus 8 lr~~L~~~G~rfR~q~~~lpg~pD~v~~~~rlvIfvdGcfWHgH~c~~~~~p~tn~~~W~~Ki~~n~~rD~~~~~~L~~~ 87 (136)
T 1vsr_A 8 LASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQEL 87 (136)
T ss_dssp HHHHHHHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEecCCCCCcccEEeccCCEEEEEeCccccCCCCccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4456778899999888888889999999999999999976 555432233 12456667799999
Q ss_pred CCEEEEEehhhH
Q 008492 514 GWNVVSLSHQEW 525 (563)
Q Consensus 514 Gy~Vv~Vpy~EW 525 (563)
||+|+.+.-.|-
T Consensus 88 Gw~VlrfWe~ev 99 (136)
T 1vsr_A 88 GWRVLIVWECAL 99 (136)
T ss_dssp TCEEEEEEHHHH
T ss_pred CCEEEEEehHHh
Confidence 999999965554
No 4
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=98.30 E-value=1.4e-06 Score=79.64 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhcCCcceeeccccceeeeEeeCCCceEEEEcCCC---CcccCCCCC--------------ccchHHHH
Q 008492 445 SSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGVP--------------LGHTMLKR 507 (563)
Q Consensus 445 S~lq~~V~~~L~~lG~~~~~E~~~~G~~vDi~~~~~rVAIEvdGp~---Hf~~ns~~~--------------lG~t~lK~ 507 (563)
+.--..|-..|...|+.+...+.+.+|.+||++++.|+||||||-. |.|.....| .-...-+.
T Consensus 21 T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~rlvIfVdGcfWHgH~c~~~~~p~tn~~~W~~Ki~~n~~rD~~r~ 100 (155)
T 1cw0_A 21 TAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDI 100 (155)
T ss_dssp CHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccCCEEEEEeChhhccCCCccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4445566778888999999988888899999999999999999976 545432233 12466677
Q ss_pred HHHHHCCCEEEEEehhhH
Q 008492 508 RYIAAAGWNVVSLSHQEW 525 (563)
Q Consensus 508 RlL~~~Gy~Vv~Vpy~EW 525 (563)
..|+.+||+|+.|.-.|.
T Consensus 101 ~~L~~~Gw~VlrfWe~ev 118 (155)
T 1cw0_A 101 SRLQELGWRVLIVWECAL 118 (155)
T ss_dssp HHHHHTTCEEEEEEHHHH
T ss_pred HHHHHCCCEEEEEehHHh
Confidence 799999999999966554
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.96 E-value=3.7 Score=43.91 Aligned_cols=146 Identities=9% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHcCCCc--C-CHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHhh
Q 008492 204 CSAQGISNIAWALSKIGGEL--L-YLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA-----KRASD 275 (563)
Q Consensus 204 ~~~q~LsNilWAlakLg~~~--~-~~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala-----~~v~~ 275 (563)
....-+.+++|+++.+.... . .......+.......+..-++.-..+.+|+++.+-..+.+....+. ..+..
T Consensus 202 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 281 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281 (510)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence 44556789999999885421 1 1122334445555667777888999999999999988776555433 34455
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCCChhHHHHHHHHhhhcchhhhhHHHHhhhhhccCCCCCCCCcccchhccCCCCCCCHH
Q 008492 276 IVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRD 355 (563)
Q Consensus 276 ~l~~f~~qeLanilwAfA~l~~~~~~L~~al~~~~~~~~~f~~~l~~~vs~~~~a~~~~~~~~L~~~~~~~~~l~~f~~q 355 (563)
.+..-++.-....+++++.+-..++..-..+.. ...+ ..+...+.+-++.
T Consensus 282 lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~----~g~l--------------------------~~L~~LL~~~~~~ 331 (510)
T 3ul1_B 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVID----AGAL--------------------------AVFPSLLTNPKTN 331 (510)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH----TTGG--------------------------GGCC-CTTCSSHH
T ss_pred hhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh----ccch--------------------------HHHHHHhcCCCHH
Confidence 666667777777788887776555443222211 1000 0111223333455
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Q 008492 356 QLGNIAWSYAVLGQMDRIFFSDIW 379 (563)
Q Consensus 356 eLanilWSLA~Lg~~d~~lf~~l~ 379 (563)
-....+|+++.+...++.....+.
T Consensus 332 v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH
Confidence 567889999998877766555443
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.44 E-value=15 Score=38.73 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=70.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCC-HHHHH--HHHHHHHHhh-CCCChHHHHHHHHHHHHCCCCC----HHH
Q 008492 194 VAIAMTALPECSAQGISNIAWALSKIGGELLY-LSEMD--RVAEVALTKV-GEFNSQNVANVAGAFASMQHSA----PDL 265 (563)
Q Consensus 194 ~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~-~~~l~--~la~~a~~~~-~~f~~q~LanilwAlA~L~~~~----~~L 265 (563)
+......+..-++.-..+++|+++.+...... ...+. .+.......+ ..-++.-..+++|+++.+.... ...
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 33344555555777777899999999654221 11110 0122334445 4557788899999999886542 233
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHHH
Q 008492 266 FSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLE 304 (563)
Q Consensus 266 ~~ala~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~~ 304 (563)
...+...+...+..-++.-..+.+|+++.+...+.....
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 280 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344555566667777889999999999999876655433
No 7
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=87.42 E-value=0.62 Score=41.03 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhcCCcceee-----cccc----ceeeeEeeCCCceEEEEcCC
Q 008492 444 TSSFQKEVARLLVSTGLNWIRE-----YAVD----GYTVDAVLVDKKVAFEIDGP 489 (563)
Q Consensus 444 ~S~lq~~V~~~L~~lG~~~~~E-----~~~~----G~~vDi~~~~~rVAIEvdGp 489 (563)
.|.+...++..|.++|+.+..| +++. -|+.||++|+ .+.|||-|.
T Consensus 5 RSglEek~A~~Le~~GV~y~yE~~k~~Y~ip~~~~~YtPDF~Lpn-gi~iEvKG~ 58 (138)
T 1m0d_A 5 RSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPN-GIFVETKGL 58 (138)
T ss_dssp -CHHHHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEECTT-SCEEEEESS
T ss_pred cchHHHHHHHHHHhCCCCEEeecceEeeeecCCCceeCCCEEccC-CCEEEeccc
Confidence 5889999999999999988766 3432 2889999998 789999984
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.83 E-value=34 Score=36.37 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhcccccchhhhhhhhhccchhHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCCHHHHHHHH----
Q 008492 158 LNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVA---- 233 (563)
Q Consensus 158 vn~atAL~RLak~~~~~s~~~~~r~~~ar~~~~~~L~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~~~~l~~la---- 233 (563)
.+++++|+-|+...... +. .+... ..+......+..-++.---..+|+|+.+..+.... -+.+.
T Consensus 138 ~~Aa~aL~nia~~~~~~----~~--~vv~~----Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~--r~~i~~~g~ 205 (529)
T 3tpo_A 138 FESAWALTNIASGTSEQ----TK--AVVDG----GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF--RDLVIKHGA 205 (529)
T ss_dssp HHHHHHHHHHHTSCHHH----HH--HHHHT----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHH----HH--HHHHC----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH--HHHHHHcCC
Confidence 46788888888753221 11 11111 12333345667777777789999999997643211 11111
Q ss_pred -HHHHHhhCC-----CChHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 234 -EVALTKVGE-----FNSQNVANVAGAFASMQHSA-----PDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 234 -~~a~~~~~~-----f~~q~LanilwAlA~L~~~~-----~~L~~ala~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
......+.. ....-+.+++|+++.+.... ......+...+...+..-++.-..+.+|+++.+...+...
T Consensus 206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~ 285 (529)
T 3tpo_A 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285 (529)
T ss_dssp HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 122333332 23345778999998875332 2333445556667778888899999999999987666554
Q ss_pred HH
Q 008492 303 LE 304 (563)
Q Consensus 303 ~~ 304 (563)
..
T Consensus 286 ~~ 287 (529)
T 3tpo_A 286 IE 287 (529)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=74.42 E-value=78 Score=33.45 Aligned_cols=99 Identities=10% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCc--C-CHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHhh
Q 008492 204 CSAQGISNIAWALSKIGGEL--L-YLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA-----KRASD 275 (563)
Q Consensus 204 ~~~q~LsNilWAlakLg~~~--~-~~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala-----~~v~~ 275 (563)
....-+.+++|+++.+.... . .......+.......+..-++.-..+.+|+++.+-..+++....+. ..++.
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 34456789999999885421 1 1122334445555667777888999999999999888776655443 34445
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 276 IVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 276 ~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
.+..-++.-....+.+++.+-..++..
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHH
Confidence 556666666677777777775555443
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.48 E-value=1.2e+02 Score=31.99 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=103.8
Q ss_pred HHHHHHHhhccchhHHhhhhHHHHHHhhhhcCCCCchhhhhhHHHHHhcccCHHHHHHHHHHHHHhhcCCCCCCCCC--h
Q 008492 80 LRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLS--P 157 (563)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~Ln~~i~~a~s~~evl~lv~~~~~~~~~~~~~~~fn--~ 157 (563)
++..|..+..+=- +.+-.....|-..+|.=.-|+ ++ .|.++.-+.-+..++. +. .-. -
T Consensus 59 i~~~v~~l~s~d~-~~q~~a~~~~rklls~e~~pp-------i~-~ii~~G~ip~LV~lL~-------~~----~~~~lq 118 (510)
T 3ul1_B 59 VEDIVKGINSNNL-ESQLQATQAARKLLSREKQPP-------ID-NIIRAGLIPKFVSFLG-------KT----DCSPIQ 118 (510)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHTCSSCCC-------HH-HHHHTTHHHHHHHHTT-------CT----TCHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCch-------HH-HHHHCCCHHHHHHHHC-------CC----CCHHHH
Confidence 5556666655542 222233334444444322232 22 4555554555555441 11 111 1
Q ss_pred hhHHHHHHHHHhcccccchhhhhhhhhccchhHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCCHHHHHHH-----
Q 008492 158 LNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRV----- 232 (563)
Q Consensus 158 vn~atAL~RLak~~~~~s~~~~~r~~~ar~~~~~~L~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~~~~l~~l----- 232 (563)
.++++||..||...... +. .+... ..+......+..=++.---..+|+|+.+..+.... -+.+
T Consensus 119 ~~Aa~aL~nias~~~e~----~~--~vv~~----GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~--r~~v~~~G~ 186 (510)
T 3ul1_B 119 FESAWALTNIASGTSEQ----TK--AVVDG----GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF--RDLVIKHGA 186 (510)
T ss_dssp HHHHHHHHHHHTSCHHH----HH--HHHHT----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTC
T ss_pred HHHHHHHHHHhcCCHHH----HH--HHHHC----CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH--HHHHHHcCC
Confidence 47899999998753221 11 11111 12233345566666777778999999997643211 1111
Q ss_pred HHHHHHhhCC-----CChHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 233 AEVALTKVGE-----FNSQNVANVAGAFASMQHSA-----PDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 233 a~~a~~~~~~-----f~~q~LanilwAlA~L~~~~-----~~L~~ala~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
.......+.. ....-+.+++|+++.+-... ......+...+...+..-++.-..+.+|+++.+...+...
T Consensus 187 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~ 266 (510)
T 3ul1_B 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266 (510)
T ss_dssp HHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred hHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhh
Confidence 1122233322 33455778899988775432 2333445556667778888889999999999998766554
Q ss_pred HH
Q 008492 303 LE 304 (563)
Q Consensus 303 ~~ 304 (563)
..
T Consensus 267 ~~ 268 (510)
T 3ul1_B 267 IE 268 (510)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=68.37 E-value=81 Score=29.76 Aligned_cols=96 Identities=8% Similarity=-0.035 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCCCH
Q 008492 204 CSAQGISNIAWALSKIGG-ELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQE 282 (563)
Q Consensus 204 ~~~q~LsNilWAlakLg~-~~~~~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala~~v~~~l~~f~~ 282 (563)
=++.--..++|+++.++. .+.+. ..+.......+..=++.--...+++++.++... ... .+...+.+-++
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~---~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~--~~~----~L~~~l~d~~~ 173 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYS---PKIVEQSQITAFDKSTNVRRATAFAISVINDKA--TIP----LLINLLKDPNG 173 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C--CHH----HHHHHHTCSSH
T ss_pred CCHHHHHHHHHHHHHHhccCCccc---HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH--HHH----HHHHHHcCCCH
Confidence 345555666777777652 11111 122223333344445555556666776665421 111 12222334445
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHH
Q 008492 283 QELAQVLWAFASLYEPADPLLESLDN 308 (563)
Q Consensus 283 qeLanilwAfA~l~~~~~~L~~al~~ 308 (563)
.--...+|+++.++..++..+..+..
T Consensus 174 ~vr~~a~~aL~~~~~~~~~~~~~L~~ 199 (280)
T 1oyz_A 174 DVRNWAAFAININKYDNSDIRDCFVE 199 (280)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55556667777666555544444433
No 12
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=67.70 E-value=42 Score=31.03 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 008492 204 CSAQGISNIAWALS 217 (563)
Q Consensus 204 ~~~q~LsNilWAla 217 (563)
++..+|-.|+=-++
T Consensus 168 lsdEeLeeILd~L~ 181 (187)
T 1y14_A 168 ISDDELERILKELS 181 (187)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444333
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=65.63 E-value=1.3e+02 Score=31.42 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=73.7
Q ss_pred HhhC-CCCCHHHHHHHHHHHHHcCCCcCC--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH----
Q 008492 198 MTAL-PECSAQGISNIAWALSKIGGELLY--LSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA---- 270 (563)
Q Consensus 198 ~~~l-~~~~~q~LsNilWAlakLg~~~~~--~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala---- 270 (563)
...+ ..-++.-..+++|+++.+....+. ......+.......+..-++.-..+++|+++.+...++.....+.
T Consensus 208 l~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~ 287 (528)
T 4b8j_A 208 LAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (528)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH
Confidence 4455 556788889999999999754211 111233444455566777888999999999999988776655443
Q ss_pred -HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 271 -KRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 271 -~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
..+...+..-++.-....+|+++.+...++..
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 35556667777888889999999998766543
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.88 E-value=1.4e+02 Score=27.90 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=55.3
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH-HhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhc
Q 008492 200 ALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVAL-TKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVH 278 (563)
Q Consensus 200 ~l~~~~~q~LsNilWAlakLg~~~~~~~~l~~la~~a~-~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala~~v~~~l~ 278 (563)
.+.+=++.-=...+|+++.++..+... ..+..... ....+=++.--...+|+++.++..++.....+...+...+.
T Consensus 62 ~l~d~~~~vR~~A~~aL~~l~~~~~~~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~ 138 (280)
T 1oyz_A 62 FCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF 138 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccc---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh
Confidence 344446666667889999998643322 22222211 11234466677888999999875433222333344445556
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 008492 279 TFQEQELAQVLWAFASLYE 297 (563)
Q Consensus 279 ~f~~qeLanilwAfA~l~~ 297 (563)
+-++.--...+++++.++.
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 6677777788888888764
No 15
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=52.80 E-value=23 Score=33.43 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=12.1
Q ss_pred cchhHHhhhhHHHHHHhhhhcCCCCch
Q 008492 90 GMFEEKREKTIEEFVHRLSQFSGPSNR 116 (563)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~ps~~ 116 (563)
.|+.+-||+..+-.--.|.+-+||+..
T Consensus 113 ~~~~~~~e~e~~~~~~~~~~~~g~~se 139 (221)
T 3hou_D 113 FMHSETREKELESIDVLLEQTTGGNNK 139 (221)
T ss_dssp -----CTHHHHHHHHHHHHHHSCSCCH
T ss_pred hhhccchHHHHHHHHHHHhhcCCCccH
Confidence 355666777666444444445555554
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=52.16 E-value=2.2e+02 Score=29.58 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCCc--CC-HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH---
Q 008492 197 AMTALPECSAQGISNIAWALSKIGGEL--LY-LSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA--- 270 (563)
Q Consensus 197 ~~~~l~~~~~q~LsNilWAlakLg~~~--~~-~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala--- 270 (563)
....+..-++.-..+++|+++.+.... .. ......+.......+..-++.-..+++|+++.+-..+++....+.
T Consensus 220 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 299 (530)
T 1wa5_B 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299 (530)
T ss_dssp HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 344445566777789999999986432 11 111223344445556666788889999999999888776555443
Q ss_pred --HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHH
Q 008492 271 --KRASDIVHTFQEQELAQVLWAFASLYEPADPLL 303 (563)
Q Consensus 271 --~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~ 303 (563)
..+...+..-++.-....+|+++.+...++...
T Consensus 300 ~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 334 (530)
T 1wa5_B 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334 (530)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHH
Confidence 345566666677777888899998876665443
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=41.15 E-value=2.1e+02 Score=26.04 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=75.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCCH-HHH-H-HHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH
Q 008492 194 VAIAMTALPECSAQGISNIAWALSKIGGELLYL-SEM-D-RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA 270 (563)
Q Consensus 194 ~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~~-~~l-~-~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala 270 (563)
+......+..-++.-..+.+|+++.+...+... ..+ + .+.......+..-++.-..+.+|+++.+-..+++....+.
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 177 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344445555667888889999999998764321 111 1 1333445556666888889999999999988776655443
Q ss_pred -----HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHHH
Q 008492 271 -----KRASDIVHTFQEQELAQVLWAFASLYEPADPLLE 304 (563)
Q Consensus 271 -----~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~~ 304 (563)
..+...+..-++.-....+|+++.+-..++....
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3455666666788888999999998765554433
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=35.92 E-value=2.5e+02 Score=25.46 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCCc-CCHHHH-H-HHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHH-
Q 008492 193 LVAIAMTALPECSAQGISNIAWALSKIGGEL-LYLSEM-D-RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE- 268 (563)
Q Consensus 193 L~~~~~~~l~~~~~q~LsNilWAlakLg~~~-~~~~~l-~-~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~a- 268 (563)
.+......+..-++.-....+|+++.+.... .....+ + .........+..-++.-..+.+|+++.+...++.-...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 3344455566666888889999999998632 211111 1 12334455566667888899999999999887654333
Q ss_pred ----HHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHH
Q 008492 269 ----LAKRASDIVHTFQEQELAQVLWAFASLYEPADPLL 303 (563)
Q Consensus 269 ----la~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~ 303 (563)
+...+...+.+-++.-....+|+++.+...++...
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 33445566677788888999999999987665443
No 19
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=35.72 E-value=37 Score=31.51 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=27.9
Q ss_pred HHHHHHCCCEEEEEehhh---------------------HHhhcChHHHHHHHHHHHHHHhc
Q 008492 507 RRYIAAAGWNVVSLSHQE---------------------WEELQGSFEQLDYLRVILKDYIG 547 (563)
Q Consensus 507 ~RlL~~~Gy~Vv~Vpy~E---------------------W~~l~~~~ek~~YLr~~L~~~~~ 547 (563)
.+.|+..|-.|..+++.| |..+ +++..||.++|..++.
T Consensus 132 ~~~L~~aGI~V~~~~~~e~~~~w~~fv~~~~~~~~pf~~W~~l---~~~~~y~~~~L~~il~ 190 (190)
T 2nyt_A 132 LKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDI---QENFLYYEEKLADILK 190 (190)
T ss_pred HHHHHHCCCEEEEecHHHHHHHHHHHHHccCCcCCccHhHHhc---hHhHHHHHHHHHHHhC
Confidence 356888998888775544 4433 3589999999998863
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=35.52 E-value=2.5e+02 Score=25.24 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCCc-CCHHHH--HHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHH
Q 008492 193 LVAIAMTALPECSAQGISNIAWALSKIGGEL-LYLSEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSEL 269 (563)
Q Consensus 193 L~~~~~~~l~~~~~q~LsNilWAlakLg~~~-~~~~~l--~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~al 269 (563)
.+......+..-++.-..+++|+++.+.... .....+ ..........+..-++.-..+.+|+++.+...+++....+
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444455666667888889999999998752 211111 0123344455666678888999999999997777655543
Q ss_pred H-----HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 270 A-----KRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 270 a-----~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
. ..+...+..-++.-....+|+++.+...++..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3 34556677778888899999999997766544
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.42 E-value=2.4e+02 Score=24.79 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCCc-CCHHHHH--HHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHH
Q 008492 193 LVAIAMTALPECSAQGISNIAWALSKIGGEL-LYLSEMD--RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSEL 269 (563)
Q Consensus 193 L~~~~~~~l~~~~~q~LsNilWAlakLg~~~-~~~~~l~--~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~al 269 (563)
.+......+..-++.-....+|+++.+.... .....+- .........+..-++.-..+.+|+++.+-..+++....+
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444456666668888889999999997432 1111110 022344566677788888999999999998877655444
Q ss_pred H-----HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 270 A-----KRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 270 a-----~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
. ..+...+..-++.-....+|+++.+-..++..
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 3 34455566667888888889998886654443
No 22
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=33.30 E-value=6.8 Score=34.73 Aligned_cols=7 Identities=0% Similarity=0.226 Sum_probs=3.1
Q ss_pred HHHhhhh
Q 008492 24 MEDLIKV 30 (563)
Q Consensus 24 ~~~~~~~ 30 (563)
+.++|+.
T Consensus 92 L~divP~ 98 (140)
T 2byk_A 92 LLQIVPQ 98 (140)
T ss_dssp GTTTSCS
T ss_pred Hhccccc
Confidence 3455443
No 23
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=32.52 E-value=10 Score=36.43 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=4.3
Q ss_pred Hhhhhhhhhhhhhhh
Q 008492 26 DLIKVKKKKKKGKKK 40 (563)
Q Consensus 26 ~~~~~~~~~~~~~~~ 40 (563)
.|...||++||+||+
T Consensus 109 ~M~gLKKrdKKkkKk 123 (232)
T 1914_A 109 NMDGLKKRDKKNKSK 123 (232)
T ss_dssp HSCCSBCC-------
T ss_pred cccccCccccchhhh
Confidence 345556555544333
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=31.99 E-value=2.6e+02 Score=24.51 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=73.4
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCCCcC-CHHHHH--HHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHHHH----
Q 008492 198 MTALPECSAQGISNIAWALSKIGGELL-YLSEMD--RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA---- 270 (563)
Q Consensus 198 ~~~l~~~~~q~LsNilWAlakLg~~~~-~~~~l~--~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~ala---- 270 (563)
...+..=++.-..+.+|+++.+..... ....+- .........+..-++.-....+|+++.+-..+++....+.
T Consensus 18 ~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 344556678888899999999974321 111110 1233445566666888889999999999887776655544
Q ss_pred -HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHHH
Q 008492 271 -KRASDIVHTFQEQELAQVLWAFASLYEPADPLLE 304 (563)
Q Consensus 271 -~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~~ 304 (563)
..+...+..-++.-....+|+++.+-..++....
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455667777888889999999999876655443
No 25
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=30.59 E-value=66 Score=30.37 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=16.3
Q ss_pred hhHHHHHHHhhccchhHHhhhhHHHHHHhhhhcCCCCc
Q 008492 78 NDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSN 115 (563)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~ 115 (563)
..+..-.-+.+|+. .+==.||.+ .+..|+.-.+
T Consensus 124 ~~~~~~~~~~~g~~-seVf~KTLd----Yl~rFSKfkn 156 (221)
T 3hou_D 124 ESIDVLLEQTTGGN-NKDLKNTMQ----YLTNFSRFRD 156 (221)
T ss_dssp HHHHHHHHHHSCSC-CHHHHHHHH----HHHHSCSCCC
T ss_pred HHHHHHHhhcCCCc-cHHHHHHHH----HHHHhcCCCc
Confidence 33444444555554 444456655 5556664333
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=28.97 E-value=5.5e+02 Score=27.26 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=74.0
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCCcC---CHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHH
Q 008492 192 MLVAIAMTALPECSAQGISNIAWALSKIGGELL---YLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE 268 (563)
Q Consensus 192 ~L~~~~~~~l~~~~~q~LsNilWAlakLg~~~~---~~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~a 268 (563)
.++......+.+-++.-..+.++++..+....+ +..............+.+.+|-.-..++-.++++.-.+++....
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 466777788888899999999999999986432 11111112222233344567777778888899988777777677
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHcC
Q 008492 269 LAKRASDIVHTFQEQELAQVLWAFASLY 296 (563)
Q Consensus 269 la~~v~~~l~~f~~qeLanilwAfA~l~ 296 (563)
+...+...+..-++.=+...++++..+.
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 7777777777778877778888888875
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=26.95 E-value=4.7e+02 Score=25.83 Aligned_cols=111 Identities=9% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCCcCC-HHHH--HHHHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHHHH-
Q 008492 193 LVAIAMTALPECSAQGISNIAWALSKIGGELLY-LSEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE- 268 (563)
Q Consensus 193 L~~~~~~~l~~~~~q~LsNilWAlakLg~~~~~-~~~l--~~la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~~a- 268 (563)
++......+..-++.-..+++|+++.+...... ...+ ..+.......+..=++.-....+|+++.+...++.....
T Consensus 193 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 272 (450)
T 2jdq_A 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI 272 (450)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHH
Confidence 334444555666788888999999999764310 0111 112333444555556777888999999998887754443
Q ss_pred ----HHHHHhhhhcCCCHHHHHHHHHHHHHcCCCChhHH
Q 008492 269 ----LAKRASDIVHTFQEQELAQVLWAFASLYEPADPLL 303 (563)
Q Consensus 269 ----la~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L~ 303 (563)
+...+...+..-++.-....+|+++.+........
T Consensus 273 ~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~ 311 (450)
T 2jdq_A 273 LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311 (450)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 33445556666677778889999999876554433
No 28
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=26.93 E-value=3.2e+02 Score=30.42 Aligned_cols=223 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCcCccccccccccccCCCCCCchhHHHHHHHhhccchhHHhhhhHHHHHHhhhhc---CCCCchhhhhhHHHHHhcc
Q 008492 53 DDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQF---SGPSNRRKEINLNKDIVDA 129 (563)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ps~~~~~~~Ln~~i~~a 129 (563)
.|.++|++||++.++ -.+|+..+..-+.+-..-.+.....+++.+.++ ..|..+...+..=..|...
T Consensus 320 ~d~~ed~~~dd~~~~----------~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 320 GDVEGGSGGDDTISD----------WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp C------------CC----------CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT
T ss_pred CCccccccccccccc----------chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCCChhhHHHHHHHHHhcccccchhhhhhhhhccchhHHHHHHHHHhhCCCCCHHHH
Q 008492 130 QTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGI 209 (563)
Q Consensus 130 ~s~~evl~lv~~~~~~~~~~~~~~~fn~vn~atAL~RLak~~~~~s~~~~~r~~~ar~~~~~~L~~~~~~~l~~~~~q~L 209 (563)
.. +.+...+.+-++.+...++ .=++.=-.+|.+.|+++ ...-........+..++......+.+-++.--
T Consensus 390 ~~-~~~~~~l~~~l~~l~~~l~--d~~~~Vr~~a~~~l~~l-------~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 390 CM-QGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRY-------AHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp TH-HHHGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT-------HHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred ch-HHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH-------HHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHHHHcCC--CcCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHCC------CCCHHHHHHHHHHHhhhhcCCC
Q 008492 210 SNIAWALSKIGG--ELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQ------HSAPDLFSELAKRASDIVHTFQ 281 (563)
Q Consensus 210 sNilWAlakLg~--~~~~~~~l~~la~~a~~~~~~f~~q~LanilwAlA~L~------~~~~~L~~ala~~v~~~l~~f~ 281 (563)
.+.+|+++.+.- .+...+.+..+.......+..++...+..++-+++.+. ...+++++.+...+......++
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~ 539 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 539 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc
Q ss_pred --HHHHHHHHHHHHHc
Q 008492 282 --EQELAQVLWAFASL 295 (563)
Q Consensus 282 --~qeLanilwAfA~l 295 (563)
..++..++.+++.+
T Consensus 540 d~~~~~~~~~~~l~~i 555 (852)
T 4fdd_A 540 DEDKDLFPLLECLSSV 555 (852)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
No 29
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=26.83 E-value=15 Score=22.66 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.7
Q ss_pred hhCcchhHHHhhhh
Q 008492 17 ARGLASSMEDLIKV 30 (563)
Q Consensus 17 ~~~~~~~~~~~~~~ 30 (563)
|-+||.+||++++-
T Consensus 10 A~~LS~sMQdLLn~ 23 (27)
T 3tj5_B 10 ATALSGSMQYLLNY 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999863
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=26.78 E-value=3.1e+02 Score=26.68 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-CcCCHHHHHH--HHHHHHHhhCCCChHHHHHHHHHHHHCCCCCHHHH
Q 008492 190 MSMLVAIAMTALPECSAQGISNIAWALSKIGG-ELLYLSEMDR--VAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLF 266 (563)
Q Consensus 190 ~~~L~~~~~~~l~~~~~q~LsNilWAlakLg~-~~~~~~~l~~--la~~a~~~~~~f~~q~LanilwAlA~L~~~~~~L~ 266 (563)
+..|+.+... +-++.-..+.+||++.+-. .+.....+.. ........+..-++.-....+|+++.+-..+++..
T Consensus 126 l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 126 LRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 3445554432 2356677899999999843 2211111111 11222333344466777788888877644344333
Q ss_pred HHHH-----HHHhhhhcCCCHHHHHHHHHHHHHc
Q 008492 267 SELA-----KRASDIVHTFQEQELAQVLWAFASL 295 (563)
Q Consensus 267 ~ala-----~~v~~~l~~f~~qeLanilwAfA~l 295 (563)
..+. ..+...+..-+++-....+++++.+
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 3322 2223333333444444444444443
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=26.34 E-value=4.5e+02 Score=25.45 Aligned_cols=103 Identities=6% Similarity=-0.072 Sum_probs=60.7
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCC-cCCHHH-HH-HHHHHHHHhhC-CCChHHHHHHHHHHHHCCCCCHHHHHHHH-----
Q 008492 200 ALPECSAQGISNIAWALSKIGGE-LLYLSE-MD-RVAEVALTKVG-EFNSQNVANVAGAFASMQHSAPDLFSELA----- 270 (563)
Q Consensus 200 ~l~~~~~q~LsNilWAlakLg~~-~~~~~~-l~-~la~~a~~~~~-~f~~q~LanilwAlA~L~~~~~~L~~ala----- 270 (563)
.+..-++.--...+|+++.+-.. +..... ++ .........+. ..++.-..+.+||++.+-..+++....+.
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 66667787788999999998543 211111 10 01111222232 34567788999999998655544333322
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHcCCCChhH
Q 008492 271 KRASDIVHTFQEQELAQVLWAFASLYEPADPL 302 (563)
Q Consensus 271 ~~v~~~l~~f~~qeLanilwAfA~l~~~~~~L 302 (563)
..+...+..-++.-....+|+++.+-..+++.
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~ 201 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHH
Confidence 23445556667888888999998874334333
No 32
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=25.73 E-value=71 Score=33.82 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcccCCCCCc--cc------hHHHHHHHHHCCCEEEEEeh
Q 008492 478 VDKKVAFEIDGPTHFSRNTGVPL--GH------TMLKRRYIAAAGWNVVSLSH 522 (563)
Q Consensus 478 ~~~rVAIEvdGp~Hf~~ns~~~l--G~------t~lK~RlL~~~Gy~Vv~Vpy 522 (563)
.+++|.||+.+| |+..|+ |+ --.=.|+|+..||+|+.+-|
T Consensus 28 ~~~~v~vE~ss~-----n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~ny 75 (464)
T 3fnr_A 28 KQESFLLEYVSA-----NPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYY 75 (464)
T ss_dssp CSCEEEEECCCC-----CSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEEeCCC-----CCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEee
Confidence 578999998876 433332 32 22356899999999999988
Done!