BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008493
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/535 (47%), Positives = 326/535 (60%), Gaps = 26/535 (4%)
Query: 3 TMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMT 62
T+RQ GL F R ESEYD GHSSTSISAG+G+AV + +G+ V VIGDGA+T
Sbjct: 97 TIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAIT 156
Query: 63 AGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRE 122
AG A+EA N+AG + D +VILNDN + S+ VGAL++ L++L S +
Sbjct: 157 AGXAFEAXNHAGDIRPDXLVILNDN-EXSISEN--------VGALNNHLAQLLSGKLYSS 207
Query: 123 LREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182
LRE K V + P+ EL + +E+ +G + TLFEELG YIGPVDGH+V L+
Sbjct: 208 LREGGKKVFSGVP-PIKELLKRTEEHIKGXVVPG--TLFEELGFNYIGPVDGHDVLGLIT 264
Query: 183 ILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYT 242
L+ ++ K GP +H+ T+KGRGY AEK +H V KFDP++G KSS SY+
Sbjct: 265 TLKNXRDLK--GPQFLHIXTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYS 322
Query: 243 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLAC 302
F + L A D + AI A G+G F R+FP R FDV IAEQHAVTFAAGLA
Sbjct: 323 KIFGDWLCETAAKDNKLXAITPAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAI 382
Query: 303 EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC 362
G KP AIYS+F+QRAYDQV+HDV +QKLPV FA+DRAG+VGADG TH G+FD++++ C
Sbjct: 383 GGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRC 442
Query: 363 LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRI 422
+P V+ PSDE E + T +D PS RYPRGN +GVEL P K L +GKG +
Sbjct: 443 IPEXVIXTPSDENECRQXLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIV 499
Query: 423 LIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLI 482
GE++A+L +GT L A + L T+ D RF KPLD ALI A SHE L+
Sbjct: 500 KRRGEKLAILNFGT-----LXPEAAKVAESLNATLVDXRFVKPLDEALILEXAASHEALV 554
Query: 483 TVEEGSI-GGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 536
TVEE +I GG GS V + L V + LPD +I G+ + A+ GL
Sbjct: 555 TVEENAIXGGAGSGVNEVLXAH---RKPVPVLNIGLPDFFIPQGTQEEXRAELGL 606
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 357 bits (917), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 215/537 (40%), Positives = 308/537 (57%), Gaps = 25/537 (4%)
Query: 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA 60
M +++ G+SGFTK SESE+D GH+STS++ LGMA+ RD +G+ +V AVIGDG+
Sbjct: 97 MADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGS 156
Query: 61 MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPL 120
+T G A A+N G + M+++LNDN ++S+ VGA++ + LQ +
Sbjct: 157 LTGGMALAALNTIGDMGRKMLIVLNDN-EMSISEN--------VGAMNKFMRGLQVQKWF 207
Query: 121 RELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180
+E K + + P+ + ++ R + F +G+ Y+GPVDGHNV +L
Sbjct: 208 QEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQEL 267
Query: 181 VAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240
V +LE + + GP ++H+VT KG+G YAE +HG AKFDPATG+ SSA S
Sbjct: 268 VWLLERLVDLD--GPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSA--YS 323
Query: 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGL 300
++ F EA+ A+ D + AM G+GL F R P R DVGIAE+ AVT AAG+
Sbjct: 324 WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGM 383
Query: 301 ACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM 360
A +G++P AIYS+F+QRAYDQV+HDV ++ L V F +DRAG+VGADG TH G FD++F+
Sbjct: 384 ALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFL 443
Query: 361 ACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKG 420
+P + + P D AEL M+ A D P RYPRGN V P L+ G+
Sbjct: 444 RSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGNTAQV---PAGTWPDLKWGEW 499
Query: 421 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480
L G+ V +L G A+ L A+ L G V +ARF KPLD ++R +
Sbjct: 500 ERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKPLDEEMLREVGGRARA 555
Query: 481 LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 536
LITVE+ + +GGFG V++ L L TV R L +PD + +H + A+AG+
Sbjct: 556 LITVEDNTVVGGFGGAVLEALNSMN-LHPTV--RVLGIPDEFQEHATAESVHARAGI 609
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 194/511 (37%), Gaps = 117/511 (22%)
Query: 32 SISAGLGMAVGRDLKGR-----KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 86
S+ GLG A G G+ V ++GDG ++ G +EAM A D +V + D
Sbjct: 120 SLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILD 179
Query: 87 NKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 146
++RL + P P+ ++D
Sbjct: 180 ------------------------INRLGQSDP----------------APLQH---QMD 196
Query: 147 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 206
Y + E G + I VDGH+V++L + K+ P I T KGR
Sbjct: 197 IYQKRC---------EAFGWHAI-IVDGHSVEELCKAFGQAKHQ----PTAIIAKTFKGR 242
Query: 207 GYPYAEKAADKYHG-------VAKFDPATGKQFKS-------------------SARTQS 240
G E + +HG + Q +S + R S
Sbjct: 243 GITGVEDK-ESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPS 301
Query: 241 YTTY-----------FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIA 289
+Y + +AL ++A+ T +F + P R + IA
Sbjct: 302 LPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIA 361
Query: 290 EQHAVTFAAGLACEGLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGAD 347
EQ+ V+ A G A PFC+ +++F RA+DQ+ + + + G+ +G D
Sbjct: 362 EQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGED 420
Query: 348 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVEL 406
GP+ D+ +P V PSD V AA + + CF R R +
Sbjct: 421 GPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY- 477
Query: 407 PPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 464
N +VG+ +++++ ++V ++G G + LAA+ LL+ + + V D K
Sbjct: 478 ---NNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIK 534
Query: 465 PLDHALIRSLAKSHE-VLITVE----EGSIG 490
PLD LI A++ + ++TVE EG IG
Sbjct: 535 PLDRKLILDSARATKGRILTVEDHYYEGGIG 565
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 194/511 (37%), Gaps = 117/511 (22%)
Query: 32 SISAGLGMAVGRDLKGR-----KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 86
S+ GLG A G G+ V ++GDG ++ G +EAM A D +V + D
Sbjct: 122 SLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILD 181
Query: 87 NKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 146
++RL + P P+ ++D
Sbjct: 182 ------------------------INRLGQSDP----------------APLQH---QMD 198
Query: 147 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 206
Y + E G + I VDGH+V++L + K+ P I T KGR
Sbjct: 199 IYQKRC---------EAFGWHAI-IVDGHSVEELCKAFGQAKHQ----PTAIIAKTFKGR 244
Query: 207 GYPYAEKAADKYHG-------VAKFDPATGKQFKS-------------------SARTQS 240
G E + +HG + Q +S + R S
Sbjct: 245 GITGVEDK-ESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPS 303
Query: 241 YTTY-----------FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIA 289
+Y + +AL ++A+ T +F + P R + IA
Sbjct: 304 LPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIA 363
Query: 290 EQHAVTFAAGLACEGLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGAD 347
EQ+ V+ A G A PFC+ +++F RA+DQ+ + + + G+ +G D
Sbjct: 364 EQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI-RMAAISESNINLCGSHCGVSIGED 422
Query: 348 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-RYPRGNGIGVEL 406
GP+ D+ +P V PSD V AA + + CF R R +
Sbjct: 423 GPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA--NTKGICFIRTSRPENAIIY- 479
Query: 407 PPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 464
N +VG+ +++++ ++V ++G G + LAA+ LL+ + + V D K
Sbjct: 480 ---NNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIK 536
Query: 465 PLDHALIRSLAKSHE-VLITVE----EGSIG 490
PLD LI A++ + ++TVE EG IG
Sbjct: 537 PLDRKLILDSARATKGRILTVEDHYYEGGIG 567
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 37/281 (13%)
Query: 248 ALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC 302
AL E E D+ VV + +G G+ L+ R P R D + E + FA G+A
Sbjct: 60 ALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAM 119
Query: 303 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV--------GADGPTHC 352
GLKP I + F+ D++++ + KL R + +A LV G H
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI--AKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS 177
Query: 353 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF-------RYPRGNGIGVE 405
S + F+ P +VV+ PS ++ A DD P F R PR E
Sbjct: 178 NSPEAIFVHT-PGLVVVMPSTPYNAKGLLKAAIRGDD-PVVFLEPKILYRAPRE-----E 230
Query: 406 LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 465
+P G+ + E+GK R+ EG+ V L+ YG V L A+ ++++ + V D + P
Sbjct: 231 VPEGDYVV--EIGKARVAREGDDVTLVTYGAVVHKALEAAERVKAS---VEVVDLQTLNP 285
Query: 466 LD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGL 505
LD +++S++K+ ++I + GG G+ V +A+ L
Sbjct: 286 LDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKAL 326
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 332
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122
Query: 333 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 392
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 393 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 450
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 451 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487
G+ V + R +P+D I + L+TVE G
Sbjct: 241 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 277
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 332
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 51 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 110
Query: 333 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 392
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 111 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 168
Query: 393 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 450
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 169 VLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 228
Query: 451 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487
G+ V + R +P+D I + L+TVE G
Sbjct: 229 EGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGG 265
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 51/291 (17%)
Query: 248 ALIAEAEVDKDVVAIHAAMGGGTGLNL----FLRRF-PTRCFDVGIAEQHAVTFAAGLAC 302
AL E D VV + +G G+ L L+++ P R D ++E V A G+A
Sbjct: 13 ALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAA 72
Query: 303 EGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 361
GL+P I ++ ++ +DQ+V V KL R+ R+G G F +
Sbjct: 73 HGLRPVAEIQFADYIFPGFDQLVSQV--AKL--RY---RSG----------GQFTAPLVV 115
Query: 362 CLPNMVVM------APSDEAELFHM----------------VATAAAIDDRPSCFRYPRG 399
+P+ + + S EA H + AA D+ P F P+
Sbjct: 116 RMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKR 175
Query: 400 --NGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 457
+ E+P + +P +GK + EG+ + L+ YGT + L A+A L G+ V
Sbjct: 176 LYRSVKEEVPEEDYTLP--IGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEV 233
Query: 458 ADARFCKPLDH-ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 507
D R P D+ A++ S+AK+ V++ + F S V +A+D LLD
Sbjct: 234 LDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAED-LLD 283
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFMQRAYDQVVHDV--------DLQKL 332
R D I+E A G A GL+P C + +F +A DQV++ LQ +
Sbjct: 63 RIIDTPISEXGFAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPV 122
Query: 333 PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 392
P+ F G H F + C P + V++P + + ++ +A ++
Sbjct: 123 PIVFRGPNGASAGV-AAQHSQCFAAWYGHC-PGLKVVSPWNSEDAKGLIKSAIRDNNPVV 180
Query: 393 CFRYPRGNGIGVELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLES 450
G+ E PP +K + +GK +I +G + ++ + V CL A+A+L
Sbjct: 181 VLENELXYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSK 240
Query: 451 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487
G+ V + R +P D I + L+TVE G
Sbjct: 241 EGVECEVINXRTIRPXDXETIEASVXKTNHLVTVEGG 277
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 332
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 52 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 111
Query: 333 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 391
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 112 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 167
Query: 392 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 449
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 168 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 225
Query: 450 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 506
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 226 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 283
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQK--------L 332
R FD +AE A GLA +G +P I + F+ D + + + +
Sbjct: 51 RVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM 110
Query: 333 PVRFAMDRAGLVGADGPT-HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 391
P+ G G P H S + +A P + V+ PS + ++ +A D+ P
Sbjct: 111 PITIRSPFGG--GVHTPELHSDSLE-GLVAQQPGLKVVIPSTPYDAKGLLISAIR-DNDP 166
Query: 392 SCF--RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE 449
F E+P G IP +GK I EG+ + ++ YG V L A+A LE
Sbjct: 167 VIFLEHLKLYRSFRQEVPEGEYTIP--IGKADIKREGKDITIIAYGAMVHESLKAAAELE 224
Query: 450 SNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 506
G+ V D R +PLD +I S+ K+ ++ E G ++VV + + +L
Sbjct: 225 KEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAIL 282
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 36/250 (14%)
Query: 281 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKL------- 332
+R FD I+E V A G+ GL+P I ++ + A DQ+V ++ +
Sbjct: 53 SRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFI 112
Query: 333 -PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 391
P+ M G + G TH S + F VM PS+ + ++ + DD P
Sbjct: 113 APLTLRMPCGGGIYG-GQTHSQSPEAMFTQVCGLRTVM-PSNPYDAKGLLIASIECDD-P 169
Query: 392 SCFRYPRGNGIG------------------VELPPGNKGIPLEVGKGRILIEGERVALLG 433
F P+ G +P G +PL+ K I G V++L
Sbjct: 170 VIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVSVLT 227
Query: 434 YGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSIGGF 492
YGT V A E +G+ V D R PLD ++ S+ K+ ++ E GF
Sbjct: 228 YGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGF 284
Query: 493 GSHVVQFLAQ 502
G+ +V + +
Sbjct: 285 GAELVSLVQE 294
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 42/253 (16%)
Query: 281 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMD 339
+R FD I+E V A G GL+P I ++ + A DQ+V + +L R A +
Sbjct: 52 SRVFDAPISESGIVGTAVGXGAYGLRPVVEIQFADYFYPASDQIVS--EXARLRYRSAGE 109
Query: 340 R-----------AGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 388
G+ G G TH S + F + + PS+ + ++ + D
Sbjct: 110 FIAPLTLRXPCGGGIYG--GQTHSQSPEAXFTQVC-GLRTVXPSNPYDAKGLLIASIECD 166
Query: 389 DRPSCFRYPRG--NG----------------IGVELPPGNKGIPLEVGKGRILIEGERVA 430
D P F P+ NG +P G +PL+ K I G V+
Sbjct: 167 D-PVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLD--KAAITRPGNDVS 223
Query: 431 LLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD-HALIRSLAKSHEVLITVEEGSI 489
+L YGT V A E +G+ V D R PLD ++ S+ K+ ++ E
Sbjct: 224 VLTYGTTV---YVAQVAAEESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRT 280
Query: 490 GGFGSHVVQFLAQ 502
GFG+ +V + +
Sbjct: 281 CGFGAELVSLVQE 293
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 304 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGSFDVTFMA 361
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 362 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 26 TGHSSTSISAGLGMAVGR----------DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY 75
TG ++ +GMA+G D K ++ +GDG + G ++EA + AG
Sbjct: 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGT 213
Query: 76 LDSDMIVILNDNKQVSL 92
L + ++ L D+ +S+
Sbjct: 214 LKLNKLIALYDDNGISI 230
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 304 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM--DRAGLVGADGPTHCGSFDVTFMA 361
G KPF + +F + + + L K+P F D GL G DGPTH V +
Sbjct: 472 GYKPFGGTFLTFSDYSRN-ALRVAALMKVPSIFVFTHDSIGL-GEDGPTHQSVEHVASLR 529
Query: 362 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400
+PN+ V P+D E + T A PSC + R N
Sbjct: 530 LIPNLDVWRPADTVETA-VAWTYAVAHQHPSCLIFSRQN 567
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 26 TGHSSTSISAGLGMAVGR----------DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY 75
TG ++ +GMA+G D K ++ +GDG + G ++EA + AG
Sbjct: 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGT 213
Query: 76 LDSDMIVILNDNKQVSL 92
L + ++ L D+ +S+
Sbjct: 214 LKLNKLIALYDDNGISI 230
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 344 VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG 403
+G DGPTH + + PN+ V+ P+D E F+ A + P+ R +
Sbjct: 461 LGEDGPTHQPVEHLXSLRAXPNLFVIRPADAYETFYAWLVALRRKEGPTALVLTR-QAVP 519
Query: 404 VELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTV 457
+ P +G+ + G +L +E + L+ G+ V L A ALL G+R+ V
Sbjct: 520 LLSPEKARGL---LRGGYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRV 572
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 304 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRF--AMDRAGLVGADGPTHCGSFDVTFMA 361
G+KP+ + F + + + L K PV + D GL G DGPTH V +
Sbjct: 427 GIKPYGGTFLVFSDYSRNAIRXSA-LXKQPVVHVXSHDSIGL-GEDGPTHQPIEHVPSLR 484
Query: 362 CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPP--GNKGIPLEVGK 419
+PN+ V P+D E A D PS R N L P + + +
Sbjct: 485 LIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQN-----LXPVVQTQHQVANIAR 539
Query: 420 GRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVA 458
G L++ ++ ++ G+ V+ + + E G++L VA
Sbjct: 540 GGYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 44 DLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 92
DLK ++ +GDG + G ++EA + AG L + +V D+ +S+
Sbjct: 143 DLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISI 191
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 336 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 394
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 439 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 495
Query: 395 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 451
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 496 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 550
Query: 452 GLRLTV 457
G V
Sbjct: 551 GFACNV 556
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 41 VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 92
+G DL K + + GDG + G +YEA + AG D +++ D+ +S+
Sbjct: 137 LGSDLIDHK--IYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISI 186
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 336 FAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCF 394
F D G VG DGPTH ++ PN + P+D E ++ A A++ D PS F
Sbjct: 442 FTHDSIG-VGEDGPTHQPIEQLSTFRAXPNFLTFRPADGVE--NVKAWQIALNADIPSAF 498
Query: 395 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVA---LLGYGTAVQSCLAASALLESN 451
R +L N+ + +V G L++ + A LL G+ V CL ++ LE
Sbjct: 499 VLSRQ-----KLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQ 553
Query: 452 GLRLTV 457
G V
Sbjct: 554 GFACNV 559
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 41 VGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSL 92
+G DL K + + GDG + G +YEA + AG D +++ D+ +S+
Sbjct: 140 LGSDLIDHK--IYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISI 189
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 38 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 97
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR--------- 203
Query: 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 154
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 204 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 254
Query: 155 GSGSTLFEELGLYYIGP 171
G G TL E L Y GP
Sbjct: 255 GEGPTLIETLCFRY-GP 270
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 38 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 97
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR--------- 204
Query: 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 154
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 205 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 255
Query: 155 GSGSTLFEELGLYYIGP 171
G G TL E L Y GP
Sbjct: 256 GEGPTLIETLCFRY-GP 271
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 38 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88
G+A+G ++G+K + GDG + G YE +N AG + I ++ +N+
Sbjct: 154 GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 204
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 38 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 97
G+A+G ++G+K + GDG + G Y+ +N AG + I ++ +N+
Sbjct: 153 GVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNR--------- 203
Query: 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTK-QIGGPMHELA--AKVDEYARGMIS 154
A+S+ + + + L + + VA G+ Q+ G M LA A V I+
Sbjct: 204 -------FAISTPVEKQTVAKTLAQ-KAVAAGIPGIQVDG-MDPLAVYAAVKAARERAIN 254
Query: 155 GSGSTLFEELGLYYIGP 171
G G TL E L Y GP
Sbjct: 255 GEGPTLIETLCFRY-GP 270
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 282 RCFDVGIAEQHAVTFAAGL-ACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDR 340
R G+ E GL A +G+ PF + +F+ A V + A
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 341 AGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400
+ VG DGPTH V + +PN+ V+ PSD+ E A A + P+ R N
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSRQN 522
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 57 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTAT 96
GDG + G EA++ AG+L + ++++ D+ +S+ +T
Sbjct: 156 GDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGST 195
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFIC 197
Query: 85 NDNK 88
+N+
Sbjct: 198 ENNR 201
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 304 GLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTF 359
GLK + ++S +++ A + L +LPV + + VG DGPTH +
Sbjct: 451 GLKTYGGTFFVFSDYLRPA----IRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAA 506
Query: 360 MACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE-VG 418
+ PN+ V+ P+D E A ++P+ R + +E G K E V
Sbjct: 507 LRAXPNVSVIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLE---GAKDDTYEKVA 563
Query: 419 KGRILIEGER-----VALLGYGTAVQSCLAASALLESNGLRLTV 457
KG ++ + V LL G+ V + A L +G+ +V
Sbjct: 564 KGAYVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASV 607
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 85 NDNK 88
+N+
Sbjct: 215 ENNR 218
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 197
Query: 85 NDNK 88
+N+
Sbjct: 198 ENNR 201
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 85 NDNK 88
+N+
Sbjct: 215 ENNR 218
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 85 NDNK 88
+N+
Sbjct: 215 ENNR 218
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 84
G G + G G+A+ G+ + + GDGA GQ +EA N A I I
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFIC 214
Query: 85 NDNK 88
+N+
Sbjct: 215 ENNR 218
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 278 RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA---IYSSFMQRAYDQVVHDVDLQKLPV 334
RF R +G A+ L G P+CA +++ +M+ A + L + V
Sbjct: 418 RFGVREHGMG-----AICNGIALHSPGFVPYCATFFVFTDYMRGA----MRISALSEAGV 468
Query: 335 RFAM--DRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPS 392
+ M D GL G DGPTH + +PN++++ P+D E A RPS
Sbjct: 469 IYVMTHDSIGL-GEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPS 527
Query: 393 CFRYPR 398
R
Sbjct: 528 ILALSR 533
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 158 STLFEELGLYYIGPVDGHN-VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYP 209
ST FE LG + I +G+ DD+ A ++E K T P LI V T G G P
Sbjct: 215 STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSP 266
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 287 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 344
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 407 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 465
Query: 345 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 376
G DGPTH V + PNM P D+ E
Sbjct: 466 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 497
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 145 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 204
+D + G + + FE G + I +DGH+ + +EE + T P L+ T
Sbjct: 188 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTII 246
Query: 205 GRGYP 209
G G P
Sbjct: 247 GFGSP 251
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 287 GIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVR-FAMDRAGLV 344
G+ E A G++ G P+ + + F++ A + V +++ V + D GL
Sbjct: 408 GVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL- 466
Query: 345 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 376
G DGPTH V + PNM P D+ E
Sbjct: 467 GEDGPTHQPVEQVASLRVTPNMSTWRPCDQVE 498
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 145 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 204
+D + G + + FE G + I +DGH+ + +EE + T P L+ T
Sbjct: 189 IDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTII 247
Query: 205 GRGYP 209
G G P
Sbjct: 248 GFGSP 252
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ-----RAYDQVVHDVDLQKLPVRF 336
R G+ E +G+ G P A +F+Q R ++ +D+ + V +
Sbjct: 433 RTLHFGVREHAMGAILSGIVLHG--PTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYV-W 489
Query: 337 AMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396
D GL G DGPTH ++ + +P + V+ P+D E + T A
Sbjct: 490 THDSIGL-GEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILA---------- 538
Query: 397 PRGNGIG-VELPPGNKGIPLEVGK--------GRILIE------GER--VALLGYGTAVQ 439
R NG G V L +G+P+ G G +L + GE V L+ G+ VQ
Sbjct: 539 -RRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQ 597
Query: 440 SCLAASALLESNGL 453
+AA LL N +
Sbjct: 598 LAVAAQTLLADNDI 611
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 339
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 408 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 466
Query: 340 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 467 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 526
Query: 399 GN 400
N
Sbjct: 527 QN 528
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 339
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 340 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 399 GN 400
N
Sbjct: 529 QN 530
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 282 RCFDVGIAEQHAVTFAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMD 339
R GI E G++ G KP+ + +F+ A V L PV +
Sbjct: 410 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSA-LSGHPVIWVAT 468
Query: 340 RAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398
+ VG DGPTH + LPN+ V P+D E+ + PS R
Sbjct: 469 HDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR 528
Query: 399 GN 400
N
Sbjct: 529 QN 530
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 452 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK 511
G+++T + F KPL ++ SLA + +L G + G G+ + +L + L G+V
Sbjct: 252 GIKVTEGNKTFWKPLTTKIV-SLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVV 310
Query: 512 WRPLVLP 518
P LP
Sbjct: 311 GLPGTLP 317
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 115 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG--------L 166
+S RPL+ +R KG ++ G + + +VD AR +I+G + +ELG L
Sbjct: 323 KSGRPLKSIRARLKGKEGRLRGNL--MGKRVDFSARTVITGDPNLSLDELGVPRSIAKTL 380
Query: 167 YYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 222
Y V +N+ L E V+N P +++ + G E+ +YH A
Sbjct: 381 TYPETVTPYNIYQL---QELVRNGPDEHPGAKYIIRDTG------ERIDLRYHKRA 427
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 139 HELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE----VKNTKTT 193
+E+ A++D R + I G + L + Y+G D H V + A +E +KN TT
Sbjct: 164 YEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPD-HGVPESAASFDELLSVIKNCVTT 222
Query: 194 GPVLIHVVTEKGR 206
P+L+H GR
Sbjct: 223 SPILVHCSAGIGR 235
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 55 VIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRL 114
++G G G A+EA+ A + ++L D + A G + A+++ L
Sbjct: 27 MVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQG----LSAINTYLGDN 82
Query: 115 QSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-YYIGPVD 173
++ +R +R G+ ++ +++L VD+ LFEE GL +I
Sbjct: 83 NADDYVRMVRTDLMGLVRE--DLIYDLGRHVDDSVH---------LFEEWGLPVWIKDEH 131
Query: 174 GHNVD 178
GHN+D
Sbjct: 132 GHNLD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,932,824
Number of Sequences: 62578
Number of extensions: 739633
Number of successful extensions: 1857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 84
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)