Query 008493
Match_columns 563
No_of_seqs 220 out of 2364
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 12:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02582 1-deoxy-D-xylulose-5- 100.0 8E-103 2E-107 854.0 62.9 560 1-560 118-677 (677)
2 COG1154 Dxs Deoxyxylulose-5-ph 100.0 5E-100 1E-104 789.7 56.4 534 1-552 89-625 (627)
3 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.3E-99 3E-104 820.8 61.1 536 1-560 164-701 (701)
4 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2.3E-94 4.9E-99 792.1 60.6 531 1-549 85-616 (617)
5 PRK12571 1-deoxy-D-xylulose-5- 100.0 4.6E-93 1E-97 783.8 60.0 539 1-554 93-632 (641)
6 PLN02234 1-deoxy-D-xylulose-5- 100.0 3.7E-93 8.1E-98 771.1 53.5 485 1-517 151-635 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.8E-88 3.9E-93 741.5 54.4 492 1-549 87-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 4.2E-86 9.2E-91 726.8 53.6 487 1-549 91-580 (580)
9 KOG0523 Transketolase [Carbohy 100.0 1.3E-77 2.9E-82 618.1 40.5 486 1-556 92-632 (632)
10 PRK12753 transketolase; Review 100.0 7.4E-77 1.6E-81 656.6 47.5 476 1-549 87-663 (663)
11 PLN02790 transketolase 100.0 4.6E-76 9.9E-81 651.1 48.1 475 1-549 78-654 (654)
12 PTZ00089 transketolase; Provis 100.0 1E-75 2.2E-80 649.0 45.6 472 1-551 89-660 (661)
13 TIGR00232 tktlase_bact transke 100.0 2.4E-75 5.2E-80 645.3 46.6 475 1-549 83-653 (653)
14 PRK12754 transketolase; Review 100.0 3.6E-75 7.9E-80 638.4 46.4 477 1-549 87-663 (663)
15 PRK05899 transketolase; Review 100.0 4.6E-75 1E-79 645.1 45.1 474 1-549 91-624 (624)
16 TIGR03186 AKGDH_not_PDH alpha- 100.0 8.4E-71 1.8E-75 608.1 47.2 533 1-551 159-860 (889)
17 PRK09405 aceE pyruvate dehydro 100.0 9.4E-70 2E-74 599.9 48.8 489 1-551 165-863 (891)
18 COG0021 TktA Transketolase [Ca 100.0 2.4E-68 5.2E-73 556.3 41.6 476 1-550 89-663 (663)
19 PRK13012 2-oxoacid dehydrogena 100.0 1.6E-67 3.5E-72 584.8 47.5 486 1-551 173-868 (896)
20 COG3958 Transketolase, C-termi 100.0 1.6E-67 3.4E-72 502.5 33.5 304 238-549 6-312 (312)
21 CHL00144 odpB pyruvate dehydro 100.0 1.3E-56 2.9E-61 457.0 36.0 307 238-553 3-327 (327)
22 PLN02683 pyruvate dehydrogenas 100.0 1.6E-55 3.4E-60 453.1 36.6 310 237-552 25-353 (356)
23 PRK09212 pyruvate dehydrogenas 100.0 2.7E-55 5.9E-60 448.3 35.9 306 238-551 3-325 (327)
24 PRK11892 pyruvate dehydrogenas 100.0 3.8E-55 8.2E-60 462.1 37.0 306 237-549 140-462 (464)
25 COG0022 AcoB Pyruvate/2-oxoglu 100.0 2.3E-55 5E-60 422.2 28.9 304 239-550 2-323 (324)
26 PTZ00182 3-methyl-2-oxobutanat 100.0 7.5E-54 1.6E-58 440.5 34.4 308 236-549 32-355 (355)
27 TIGR00759 aceE pyruvate dehydr 100.0 1.9E-49 4.1E-54 432.8 42.9 529 1-551 159-857 (885)
28 KOG0524 Pyruvate dehydrogenase 100.0 3E-48 6.5E-53 362.8 24.4 307 236-549 32-358 (359)
29 PRK09404 sucA 2-oxoglutarate d 100.0 5.5E-44 1.2E-48 399.8 38.0 430 26-519 313-899 (924)
30 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2E-42 4.4E-47 385.2 39.6 417 26-502 314-890 (929)
31 COG2609 AceE Pyruvate dehydrog 100.0 3.4E-42 7.5E-47 358.4 32.3 529 1-551 162-859 (887)
32 PRK05261 putative phosphoketol 100.0 6.4E-40 1.4E-44 359.1 44.4 471 4-549 117-741 (785)
33 KOG0525 Branched chain alpha-k 100.0 2.7E-39 5.8E-44 298.2 15.9 305 236-550 38-361 (362)
34 PF13292 DXP_synthase_N: 1-deo 100.0 1.7E-35 3.6E-40 282.7 10.9 186 1-202 85-270 (270)
35 cd07033 TPP_PYR_DXS_TK_like Py 100.0 4.7E-34 1E-38 262.1 19.0 154 244-398 2-156 (156)
36 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 3.2E-31 6.8E-36 244.4 16.6 152 244-398 2-167 (167)
37 PF02779 Transket_pyr: Transke 100.0 2.5E-31 5.3E-36 249.8 10.9 165 237-402 1-176 (178)
38 smart00861 Transket_pyr Transk 100.0 1.9E-27 4E-32 221.7 17.8 158 240-399 1-167 (168)
39 cd02007 TPP_DXS Thiamine pyrop 99.9 1.4E-27 3E-32 226.7 13.7 147 1-208 49-195 (195)
40 PF00456 Transketolase_N: Tran 99.9 1.6E-27 3.4E-32 242.3 11.1 166 1-222 84-261 (332)
41 COG3959 Transketolase, N-termi 99.9 5.5E-27 1.2E-31 216.3 13.0 149 2-205 93-243 (243)
42 cd02017 TPP_E1_EcPDC_like Thia 99.9 2.2E-26 4.8E-31 233.8 14.9 166 1-220 88-334 (386)
43 cd02012 TPP_TK Thiamine pyroph 99.9 1.5E-25 3.2E-30 222.7 15.0 165 2-222 79-245 (255)
44 PRK07119 2-ketoisovalerate fer 99.9 2.3E-22 4.9E-27 207.6 26.0 252 276-550 44-350 (352)
45 COG3957 Phosphoketolase [Carbo 99.9 4.7E-21 1E-25 202.1 27.9 423 1-483 128-693 (793)
46 PRK08659 2-oxoglutarate ferred 99.9 4.3E-21 9.3E-26 199.6 26.5 247 279-548 47-375 (376)
47 PRK09627 oorA 2-oxoglutarate-a 99.9 3.5E-21 7.6E-26 199.6 23.8 244 280-548 47-375 (375)
48 PRK09622 porA pyruvate flavodo 99.9 1.4E-20 3E-25 198.0 27.0 254 282-550 58-382 (407)
49 TIGR03336 IOR_alpha indolepyru 99.9 6.2E-21 1.3E-25 211.2 24.8 246 281-548 46-335 (595)
50 PRK08366 vorA 2-ketoisovalerat 99.9 9.4E-20 2E-24 189.7 29.2 204 288-494 56-328 (390)
51 COG1071 AcoA Pyruvate/2-oxoglu 99.9 1.4E-21 3.1E-26 196.9 13.2 136 23-212 131-270 (358)
52 PRK08367 porA pyruvate ferredo 99.9 3.4E-19 7.3E-24 186.0 28.5 245 288-550 57-374 (394)
53 PF02780 Transketolase_C: Tran 99.9 1.9E-22 4.1E-27 178.1 3.5 123 418-541 1-124 (124)
54 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 1.5E-19 3.1E-24 198.0 24.3 219 281-500 237-537 (562)
55 CHL00149 odpA pyruvate dehydro 99.8 8.1E-20 1.8E-24 187.7 13.6 131 25-211 126-267 (341)
56 PRK12270 kgd alpha-ketoglutara 99.8 2.6E-17 5.7E-22 179.7 31.8 434 27-523 619-1206(1228)
57 PF00676 E1_dh: Dehydrogenase 99.8 6.5E-20 1.4E-24 185.6 10.1 137 22-212 96-234 (300)
58 TIGR03182 PDH_E1_alph_y pyruva 99.8 2.2E-19 4.8E-24 183.1 12.7 133 25-211 108-242 (315)
59 cd02000 TPP_E1_PDC_ADC_BCADC T 99.8 4.1E-19 9E-24 179.9 13.6 136 21-210 98-235 (293)
60 PLN02374 pyruvate dehydrogenas 99.8 5.1E-19 1.1E-23 185.6 13.5 130 26-211 193-333 (433)
61 PLN02269 Pyruvate dehydrogenas 99.8 5E-19 1.1E-23 182.3 12.7 131 26-212 137-268 (362)
62 TIGR03181 PDH_E1_alph_x pyruva 99.8 1.6E-18 3.5E-23 178.5 12.5 138 21-212 115-255 (341)
63 cd02016 TPP_E1_OGDC_like Thiam 99.7 3.1E-18 6.7E-23 167.6 9.0 132 26-211 112-254 (265)
64 cd02011 TPP_PK Thiamine pyroph 99.7 1E-16 2.2E-21 153.0 12.9 145 7-209 43-209 (227)
65 KOG0225 Pyruvate dehydrogenase 99.7 3.9E-17 8.4E-22 158.7 9.4 134 23-212 160-296 (394)
66 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 2.1E-16 4.6E-21 147.8 9.6 128 23-202 44-171 (172)
67 COG4231 Indolepyruvate ferredo 99.7 1.8E-14 4E-19 152.3 24.4 249 281-552 58-356 (640)
68 cd02013 TPP_Xsc_like Thiamine 99.7 6.2E-16 1.3E-20 147.6 11.4 134 23-207 49-183 (196)
69 PRK06163 hypothetical protein; 99.6 6E-16 1.3E-20 147.4 10.9 125 23-209 53-179 (202)
70 cd03371 TPP_PpyrDC Thiamine py 99.6 1.6E-15 3.5E-20 143.4 11.6 125 21-207 42-167 (188)
71 TIGR02176 pyruv_ox_red pyruvat 99.6 6.2E-14 1.4E-18 164.2 27.2 253 282-551 53-381 (1165)
72 cd02006 TPP_Gcl Thiamine pyrop 99.6 1.6E-15 3.4E-20 145.6 11.6 143 23-206 53-197 (202)
73 cd02015 TPP_AHAS Thiamine pyro 99.6 1.5E-15 3.2E-20 143.9 11.0 131 24-206 47-177 (186)
74 cd00568 TPP_enzymes Thiamine p 99.6 1.1E-15 2.5E-20 142.1 10.0 129 21-202 40-168 (168)
75 cd02001 TPP_ComE_PpyrDC Thiami 99.6 1.5E-15 3.2E-20 139.5 10.5 118 24-205 39-157 (157)
76 COG0674 PorA Pyruvate:ferredox 99.6 5.8E-14 1.3E-18 145.5 23.5 216 279-497 46-329 (365)
77 cd02010 TPP_ALS Thiamine pyrop 99.6 2.1E-15 4.5E-20 141.5 11.5 130 21-204 42-171 (177)
78 cd02003 TPP_IolD Thiamine pyro 99.6 2E-15 4.3E-20 145.1 11.4 142 23-207 44-188 (205)
79 cd02008 TPP_IOR_alpha Thiamine 99.6 2.4E-15 5.2E-20 141.4 11.4 128 25-203 49-177 (178)
80 KOG0451 Predicted 2-oxoglutara 99.6 1.8E-14 4E-19 147.8 16.0 437 4-500 238-873 (913)
81 KOG1182 Branched chain alpha-k 99.6 1.9E-15 4E-20 145.5 8.0 139 26-221 192-335 (432)
82 TIGR03846 sulfopy_beta sulfopy 99.6 6.5E-15 1.4E-19 138.3 11.4 119 24-206 39-159 (181)
83 cd02009 TPP_SHCHC_synthase Thi 99.6 3.5E-15 7.7E-20 139.8 9.5 129 23-203 47-175 (175)
84 cd02014 TPP_POX Thiamine pyrop 99.6 7.4E-15 1.6E-19 138.1 11.0 129 23-205 47-175 (178)
85 cd03372 TPP_ComE Thiamine pyro 99.6 1.6E-14 3.5E-19 135.6 11.6 122 22-207 37-159 (179)
86 cd02002 TPP_BFDC Thiamine pyro 99.6 7.6E-15 1.7E-19 138.1 9.4 133 23-202 46-178 (178)
87 PF02775 TPP_enzyme_C: Thiamin 99.6 1.3E-14 2.9E-19 132.9 9.3 131 22-200 23-153 (153)
88 cd02005 TPP_PDC_IPDC Thiamine 99.5 2.1E-14 4.6E-19 135.4 9.6 128 23-206 46-177 (183)
89 COG0028 IlvB Thiamine pyrophos 99.5 6.5E-14 1.4E-18 152.8 11.3 131 22-205 403-533 (550)
90 TIGR03297 Ppyr-DeCO2ase phosph 99.5 1.3E-13 2.8E-18 142.5 11.9 125 20-207 214-340 (361)
91 cd03375 TPP_OGFOR Thiamine pyr 99.5 1.9E-13 4.2E-18 129.9 12.0 138 26-207 50-188 (193)
92 PRK09107 acetolactate synthase 99.5 1.1E-13 2.5E-18 153.8 11.0 131 23-205 426-556 (595)
93 TIGR02418 acolac_catab acetola 99.5 2.6E-13 5.6E-18 149.7 12.9 130 23-206 404-533 (539)
94 PRK12474 hypothetical protein; 99.5 2.1E-13 4.5E-18 149.6 11.7 129 26-202 388-518 (518)
95 cd03376 TPP_PFOR_porB_like Thi 99.5 2.6E-13 5.6E-18 132.7 10.7 142 26-206 61-203 (235)
96 PRK09124 pyruvate dehydrogenas 99.5 1.9E-13 4E-18 151.9 10.9 129 24-206 405-533 (574)
97 PRK06965 acetolactate synthase 99.5 2.7E-13 5.9E-18 150.7 12.0 133 22-206 432-565 (587)
98 PRK06725 acetolactate synthase 99.5 2.2E-13 4.9E-18 150.7 11.0 129 24-205 419-547 (570)
99 PRK06546 pyruvate dehydrogenas 99.5 2.6E-13 5.5E-18 150.6 11.5 129 24-206 405-533 (578)
100 PRK06154 hypothetical protein; 99.5 1.8E-13 3.8E-18 151.4 10.0 131 25-208 429-560 (565)
101 PRK07524 hypothetical protein; 99.5 2.6E-13 5.7E-18 149.5 11.3 130 24-207 404-533 (535)
102 PRK06457 pyruvate dehydrogenas 99.4 2.9E-13 6.2E-18 149.5 11.4 129 24-205 393-521 (549)
103 KOG0450 2-oxoglutarate dehydro 99.4 1.3E-11 2.9E-16 130.0 22.8 418 27-501 374-970 (1017)
104 TIGR01504 glyox_carbo_lig glyo 99.4 2.7E-13 5.8E-18 150.7 11.0 141 25-206 416-558 (588)
105 PRK07418 acetolactate synthase 99.4 3E-13 6.6E-18 151.2 11.4 130 24-206 431-562 (616)
106 PRK06048 acetolactate synthase 99.4 3.3E-13 7.1E-18 149.4 11.4 130 24-206 411-541 (561)
107 PRK05858 hypothetical protein; 99.4 4.3E-13 9.3E-18 147.9 12.0 128 25-206 405-533 (542)
108 PRK08611 pyruvate oxidase; Pro 99.4 3.6E-13 7.7E-18 149.5 11.4 129 24-206 405-533 (576)
109 PRK08273 thiamine pyrophosphat 99.4 3E-13 6.4E-18 150.7 10.7 131 25-206 413-549 (597)
110 PRK07586 hypothetical protein; 99.4 4E-13 8.6E-18 147.4 11.4 128 27-202 385-514 (514)
111 PRK08322 acetolactate synthase 99.4 5E-13 1.1E-17 147.7 12.3 131 23-207 402-532 (547)
112 CHL00099 ilvB acetohydroxyacid 99.4 4.6E-13 1E-17 148.9 11.6 132 23-205 426-557 (585)
113 PRK07064 hypothetical protein; 99.4 3.5E-13 7.5E-18 149.0 10.5 126 27-205 405-530 (544)
114 PRK07979 acetolactate synthase 99.4 5E-13 1.1E-17 148.4 11.4 130 25-205 419-550 (574)
115 PRK06112 acetolactate synthase 99.4 4.9E-13 1.1E-17 148.6 11.3 130 24-206 434-563 (578)
116 PRK08266 hypothetical protein; 99.4 5.7E-13 1.2E-17 147.1 11.7 130 25-207 400-529 (542)
117 PRK08527 acetolactate synthase 99.4 5.8E-13 1.3E-17 147.5 11.6 131 23-206 410-541 (563)
118 PRK08199 thiamine pyrophosphat 99.4 7.6E-13 1.6E-17 146.5 12.4 128 25-205 413-540 (557)
119 PRK08978 acetolactate synthase 99.4 4.4E-13 9.6E-18 148.1 10.4 130 24-206 398-528 (548)
120 PRK08979 acetolactate synthase 99.4 5.7E-13 1.2E-17 147.8 11.2 129 25-205 419-548 (572)
121 PLN02470 acetolactate synthase 99.4 5.8E-13 1.3E-17 148.1 11.3 138 24-206 423-560 (585)
122 TIGR03393 indolpyr_decarb indo 99.4 3.3E-13 7.1E-18 148.7 9.1 124 24-204 401-528 (539)
123 TIGR02720 pyruv_oxi_spxB pyruv 99.4 8.6E-13 1.9E-17 146.4 12.0 129 24-206 405-535 (575)
124 TIGR03457 sulphoacet_xsc sulfo 99.4 6.7E-13 1.4E-17 147.5 11.1 133 24-207 427-561 (579)
125 PRK06456 acetolactate synthase 99.4 8.3E-13 1.8E-17 146.7 11.6 130 24-206 418-548 (572)
126 PRK06466 acetolactate synthase 99.4 7.8E-13 1.7E-17 146.9 11.3 131 24-206 420-551 (574)
127 PLN02573 pyruvate decarboxylas 99.4 6.2E-13 1.3E-17 147.3 9.8 126 23-205 424-554 (578)
128 PRK07789 acetolactate synthase 99.4 8.7E-13 1.9E-17 147.4 10.7 136 23-205 443-578 (612)
129 PRK08617 acetolactate synthase 99.4 7.9E-13 1.7E-17 146.2 9.8 130 24-207 411-540 (552)
130 PRK11269 glyoxylate carboligas 99.4 9.5E-13 2.1E-17 146.6 10.4 141 25-206 417-559 (591)
131 PRK13030 2-oxoacid ferredoxin 99.4 3.5E-11 7.6E-16 139.0 23.2 253 281-551 74-396 (1159)
132 PRK07710 acetolactate synthase 99.4 1.3E-12 2.7E-17 145.1 11.1 130 24-206 421-551 (571)
133 PRK07282 acetolactate synthase 99.4 9.7E-13 2.1E-17 145.7 10.0 128 24-205 415-543 (566)
134 COG0567 SucA 2-oxoglutarate de 99.4 3.8E-11 8.2E-16 132.4 22.1 413 27-500 298-863 (906)
135 PRK11864 2-ketoisovalerate fer 99.4 2.4E-12 5.2E-17 128.5 11.6 145 25-208 67-212 (300)
136 PRK09259 putative oxalyl-CoA d 99.4 1.6E-12 3.4E-17 144.3 11.1 129 23-207 420-550 (569)
137 PRK06276 acetolactate synthase 99.4 1.4E-12 3E-17 145.1 10.8 128 25-205 417-545 (586)
138 PRK08155 acetolactate synthase 99.4 1.8E-12 3.9E-17 143.7 11.1 131 23-206 415-546 (564)
139 TIGR03254 oxalate_oxc oxalyl-C 99.4 1.8E-12 3.9E-17 143.4 10.9 126 25-206 415-541 (554)
140 TIGR00118 acolac_lg acetolacta 99.4 1.4E-12 3.1E-17 144.4 10.0 129 25-206 410-539 (558)
141 cd02018 TPP_PFOR Thiamine pyro 99.4 2.2E-12 4.8E-17 126.4 9.9 141 25-204 62-204 (237)
142 PRK07449 2-succinyl-5-enolpyru 99.4 1.4E-12 3E-17 144.9 9.0 129 25-205 423-551 (568)
143 PRK06882 acetolactate synthase 99.4 4E-12 8.6E-17 141.4 12.4 131 24-206 418-549 (574)
144 PRK07092 benzoylformate decarb 99.3 3.5E-12 7.5E-17 140.4 11.4 125 26-203 406-530 (530)
145 PRK08327 acetolactate synthase 99.3 2.4E-12 5.1E-17 142.7 10.1 139 23-203 426-567 (569)
146 PRK07525 sulfoacetaldehyde ace 99.3 4.3E-12 9.4E-17 141.3 12.0 133 24-207 432-566 (588)
147 PRK11869 2-oxoacid ferredoxin 99.3 2.2E-12 4.7E-17 128.2 7.6 138 27-207 60-197 (280)
148 TIGR03394 indol_phenyl_DC indo 99.3 4.5E-12 9.7E-17 139.3 10.0 125 24-206 400-524 (535)
149 PRK09193 indolepyruvate ferred 99.3 1.2E-10 2.6E-15 134.2 21.9 250 281-551 82-404 (1165)
150 PRK09628 oorB 2-oxoglutarate-a 99.3 6.3E-12 1.4E-16 125.2 9.8 137 27-206 68-204 (277)
151 PRK11866 2-oxoacid ferredoxin 99.3 5.5E-12 1.2E-16 125.4 9.4 137 26-207 58-196 (279)
152 PRK05778 2-oxoglutarate ferred 99.3 8.1E-12 1.7E-16 125.7 10.0 137 27-206 70-206 (301)
153 PRK13029 2-oxoacid ferredoxin 99.3 1.6E-10 3.4E-15 133.0 21.4 253 281-550 85-417 (1186)
154 cd06586 TPP_enzyme_PYR Pyrimid 99.3 4.6E-11 1E-15 109.3 13.8 148 249-398 3-154 (154)
155 PRK11867 2-oxoglutarate ferred 99.3 1.1E-11 2.4E-16 124.2 9.8 141 24-208 65-207 (286)
156 TIGR02177 PorB_KorB 2-oxoacid: 99.2 1.8E-11 3.9E-16 122.1 8.6 136 27-205 53-188 (287)
157 COG3961 Pyruvate decarboxylase 99.2 2.5E-11 5.4E-16 125.9 7.3 126 27-206 411-538 (557)
158 COG3962 Acetolactate synthase 99.2 5.8E-11 1.3E-15 120.8 9.4 143 19-206 436-578 (617)
159 TIGR03336 IOR_alpha indolepyru 99.1 1.1E-10 2.4E-15 129.7 10.3 130 26-204 402-531 (595)
160 PRK11865 pyruvate ferredoxin o 99.0 1.4E-09 3E-14 108.9 12.0 150 24-207 66-215 (299)
161 PLN02980 2-oxoglutarate decarb 99.0 6.3E-10 1.4E-14 136.1 10.7 132 25-206 757-892 (1655)
162 PF01855 POR_N: Pyruvate flavo 99.0 1.5E-09 3.2E-14 105.5 8.5 116 283-400 38-156 (230)
163 KOG4166 Thiamine pyrophosphate 98.9 9.4E-10 2E-14 110.8 5.9 131 25-208 522-652 (675)
164 KOG1184 Thiamine pyrophosphate 98.9 2E-09 4.2E-14 111.5 6.8 125 26-204 414-540 (561)
165 PF09364 XFP_N: XFP N-terminal 98.8 2.2E-08 4.7E-13 100.4 11.2 148 4-210 118-288 (379)
166 KOG1185 Thiamine pyrophosphate 98.8 1.9E-08 4.1E-13 103.5 10.5 139 22-207 425-564 (571)
167 PF03894 XFP: D-xylulose 5-pho 98.6 1.9E-06 4.1E-11 78.2 14.2 144 243-386 2-178 (179)
168 COG4231 Indolepyruvate ferredo 98.3 9.8E-07 2.1E-11 94.4 7.6 127 27-203 428-554 (640)
169 COG1013 PorB Pyruvate:ferredox 98.2 3.5E-06 7.5E-11 84.8 8.7 135 29-206 72-207 (294)
170 COG3960 Glyoxylate carboligase 98.1 6.1E-06 1.3E-10 81.4 7.0 138 26-204 418-557 (592)
171 cd07034 TPP_PYR_PFOR_IOR-alpha 98.0 0.00018 4E-09 66.1 15.4 147 247-397 3-159 (160)
172 TIGR03297 Ppyr-DeCO2ase phosph 97.9 0.0072 1.6E-07 63.0 26.0 208 159-396 109-333 (361)
173 cd07035 TPP_PYR_POX_like Pyrim 97.7 0.0011 2.5E-08 60.5 13.7 114 281-397 35-154 (155)
174 cd03377 TPP_PFOR_PNO Thiamine 97.5 0.00021 4.6E-09 73.2 7.3 116 50-205 152-269 (365)
175 COG1165 MenD 2-succinyl-6-hydr 97.4 0.00046 1E-08 73.4 8.2 129 27-207 420-550 (566)
176 PRK13030 2-oxoacid ferredoxin 97.3 0.00071 1.5E-08 79.5 8.8 67 26-98 467-533 (1159)
177 PRK09193 indolepyruvate ferred 97.3 0.00086 1.9E-08 78.6 9.3 68 25-98 479-546 (1165)
178 PF02776 TPP_enzyme_N: Thiamin 97.1 0.0089 1.9E-07 55.7 12.3 124 273-399 32-162 (172)
179 PRK13029 2-oxoacid ferredoxin 97.0 0.002 4.4E-08 75.4 9.2 67 26-98 494-560 (1186)
180 cd07039 TPP_PYR_POX Pyrimidine 96.9 0.064 1.4E-06 49.5 15.9 115 282-399 40-159 (164)
181 TIGR03845 sulfopyru_alph sulfo 96.8 0.053 1.1E-06 49.7 15.0 110 287-399 40-155 (157)
182 cd07037 TPP_PYR_MenD Pyrimidin 96.5 0.075 1.6E-06 48.9 13.4 113 282-397 37-161 (162)
183 PRK07586 hypothetical protein; 96.4 0.5 1.1E-05 52.1 21.6 150 246-400 4-162 (514)
184 TIGR02176 pyruv_ox_red pyruvat 96.3 0.007 1.5E-07 72.3 6.8 116 50-205 952-1069(1165)
185 PRK08199 thiamine pyrophosphat 96.2 0.46 1E-05 52.9 20.4 148 246-400 11-169 (557)
186 COG4032 Predicted thiamine-pyr 96.0 0.01 2.2E-07 51.8 4.8 109 289-398 50-163 (172)
187 PRK12474 hypothetical protein; 96.0 0.97 2.1E-05 49.9 21.7 116 282-400 45-166 (518)
188 cd02001 TPP_ComE_PpyrDC Thiami 95.6 0.17 3.7E-06 46.3 11.6 143 245-396 4-152 (157)
189 TIGR00118 acolac_lg acetolacta 95.5 0.32 6.8E-06 54.2 15.4 116 282-400 41-162 (558)
190 PRK07979 acetolactate synthase 95.5 0.32 7E-06 54.4 15.3 116 282-400 44-165 (574)
191 TIGR03457 sulphoacet_xsc sulfo 95.5 0.41 9E-06 53.6 16.2 116 282-400 41-161 (579)
192 PRK07525 sulfoacetaldehyde ace 95.4 0.37 8.1E-06 54.0 15.8 117 281-400 44-165 (588)
193 TIGR02418 acolac_catab acetola 95.4 0.38 8.1E-06 53.4 15.5 117 281-400 37-159 (539)
194 PRK08322 acetolactate synthase 95.3 0.42 9E-06 53.1 15.6 148 246-400 4-161 (547)
195 PRK06965 acetolactate synthase 95.2 0.54 1.2E-05 52.7 16.1 117 281-400 60-182 (587)
196 PRK07282 acetolactate synthase 95.2 0.44 9.5E-06 53.2 15.2 148 246-400 13-171 (566)
197 PRK06725 acetolactate synthase 95.2 0.51 1.1E-05 52.7 15.7 148 246-400 18-175 (570)
198 PRK06466 acetolactate synthase 95.2 0.46 1E-05 53.1 15.4 117 281-400 43-165 (574)
199 PRK07064 hypothetical protein; 95.1 0.58 1.2E-05 52.0 15.9 116 282-400 43-167 (544)
200 PRK08611 pyruvate oxidase; Pro 95.1 0.6 1.3E-05 52.2 16.0 117 281-400 44-165 (576)
201 PRK05858 hypothetical protein; 95.1 0.59 1.3E-05 51.9 15.8 147 247-400 9-165 (542)
202 PRK08527 acetolactate synthase 95.0 0.64 1.4E-05 51.9 15.9 115 282-399 43-163 (563)
203 TIGR02720 pyruv_oxi_spxB pyruv 95.0 0.66 1.4E-05 51.9 16.0 117 281-400 39-160 (575)
204 cd07038 TPP_PYR_PDC_IPDC_like 95.0 0.26 5.7E-06 45.4 10.7 113 284-398 38-162 (162)
205 PRK07710 acetolactate synthase 94.9 0.53 1.1E-05 52.6 15.0 147 246-399 19-175 (571)
206 PRK08155 acetolactate synthase 94.9 0.6 1.3E-05 52.1 15.4 149 246-400 16-174 (564)
207 cd02004 TPP_BZL_OCoD_HPCL Thia 94.9 0.26 5.5E-06 45.8 10.4 115 278-396 36-169 (172)
208 PRK07789 acetolactate synthase 94.9 0.69 1.5E-05 52.1 15.8 150 246-400 34-192 (612)
209 PRK08978 acetolactate synthase 94.9 0.69 1.5E-05 51.4 15.6 148 246-400 4-161 (548)
210 PRK09107 acetolactate synthase 94.8 0.65 1.4E-05 52.2 15.4 150 246-400 14-172 (595)
211 PRK06456 acetolactate synthase 94.8 0.7 1.5E-05 51.6 15.6 148 247-400 6-166 (572)
212 PRK09124 pyruvate dehydrogenas 94.8 0.78 1.7E-05 51.3 15.8 116 282-400 43-163 (574)
213 PRK08617 acetolactate synthase 94.7 0.72 1.6E-05 51.3 15.3 117 281-400 43-165 (552)
214 PRK08979 acetolactate synthase 94.7 0.78 1.7E-05 51.3 15.5 117 281-400 43-165 (572)
215 PRK07524 hypothetical protein; 94.7 0.85 1.9E-05 50.5 15.7 149 246-400 5-165 (535)
216 TIGR01504 glyox_carbo_lig glyo 94.5 1.2 2.5E-05 50.1 16.4 149 246-400 6-165 (588)
217 PRK06882 acetolactate synthase 94.5 0.98 2.1E-05 50.5 15.8 148 246-399 7-164 (574)
218 PRK06457 pyruvate dehydrogenas 94.5 0.89 1.9E-05 50.5 15.3 117 281-400 40-161 (549)
219 PLN02470 acetolactate synthase 94.5 0.9 1.9E-05 50.9 15.3 117 281-400 52-174 (585)
220 PRK06276 acetolactate synthase 94.4 1 2.2E-05 50.5 15.5 116 282-400 40-161 (586)
221 PRK11866 2-oxoacid ferredoxin 94.4 0.65 1.4E-05 46.7 12.4 147 242-396 19-189 (279)
222 PRK11269 glyoxylate carboligas 94.4 1.1 2.3E-05 50.4 15.7 149 246-400 7-166 (591)
223 TIGR02177 PorB_KorB 2-oxoacid: 94.3 0.75 1.6E-05 46.4 12.8 144 242-396 13-183 (287)
224 PRK08266 hypothetical protein; 94.2 1.2 2.6E-05 49.5 15.6 117 281-400 44-169 (542)
225 PRK08273 thiamine pyrophosphat 94.2 0.79 1.7E-05 51.5 14.3 148 246-400 6-165 (597)
226 PLN02573 pyruvate decarboxylas 94.2 0.81 1.7E-05 51.2 14.1 150 245-400 18-183 (578)
227 COG0028 IlvB Thiamine pyrophos 94.0 1.3 2.8E-05 49.1 15.1 148 247-400 6-162 (550)
228 PRK06048 acetolactate synthase 94.0 1.4 3E-05 49.2 15.6 148 246-400 11-168 (561)
229 PRK06546 pyruvate dehydrogenas 94.0 1.3 2.8E-05 49.6 15.3 117 281-400 42-163 (578)
230 PRK06163 hypothetical protein; 93.9 3.3 7.2E-05 39.6 15.9 142 247-396 20-170 (202)
231 cd03376 TPP_PFOR_porB_like Thi 93.8 1.4 3E-05 43.2 13.5 97 298-396 72-197 (235)
232 cd02010 TPP_ALS Thiamine pyrop 93.7 1.4 3E-05 41.2 12.6 117 278-397 36-168 (177)
233 PRK07092 benzoylformate decarb 93.6 1.8 3.8E-05 47.9 15.4 117 281-400 49-172 (530)
234 PRK07449 2-succinyl-5-enolpyru 93.6 1.1 2.4E-05 50.0 13.9 152 243-399 9-174 (568)
235 cd02014 TPP_POX Thiamine pyrop 93.5 1.7 3.7E-05 40.5 13.0 118 275-396 36-170 (178)
236 TIGR03394 indol_phenyl_DC indo 93.5 1.3 2.8E-05 49.1 14.1 149 246-400 3-166 (535)
237 TIGR00173 menD 2-succinyl-5-en 93.5 1.3 2.8E-05 47.7 13.6 115 282-400 40-167 (432)
238 PRK07418 acetolactate synthase 93.4 0.72 1.6E-05 52.0 12.2 117 281-400 61-183 (616)
239 cd02009 TPP_SHCHC_synthase Thi 93.4 0.99 2.2E-05 42.0 11.2 114 278-396 39-172 (175)
240 PF09363 XFP_C: XFP C-terminal 93.2 1.6 3.4E-05 41.2 11.8 117 427-551 35-164 (203)
241 CHL00099 ilvB acetohydroxyacid 93.0 0.91 2E-05 50.9 12.0 116 282-400 53-174 (585)
242 TIGR03254 oxalate_oxc oxalyl-C 92.9 2.6 5.5E-05 47.0 15.4 116 282-400 42-165 (554)
243 PRK08327 acetolactate synthase 92.9 2.7 5.9E-05 46.9 15.6 149 246-399 10-181 (569)
244 PRK11864 2-ketoisovalerate fer 92.9 0.67 1.5E-05 46.9 9.6 103 292-396 73-204 (300)
245 PRK06112 acetolactate synthase 92.7 0.85 1.8E-05 51.1 11.2 117 281-400 50-172 (578)
246 PRK09259 putative oxalyl-CoA d 92.6 2.8 6E-05 46.8 15.3 117 281-400 48-172 (569)
247 PRK11867 2-oxoglutarate ferred 92.6 1.7 3.6E-05 43.9 12.1 145 241-396 28-199 (286)
248 cd02018 TPP_PFOR Thiamine pyro 92.4 4.1 8.9E-05 40.0 14.3 117 279-396 51-200 (237)
249 TIGR03846 sulfopy_beta sulfopy 92.3 2.9 6.2E-05 39.2 12.6 142 243-396 2-153 (181)
250 cd02015 TPP_AHAS Thiamine pyro 92.1 1.6 3.4E-05 41.1 10.7 115 278-396 38-171 (186)
251 PRK11869 2-oxoacid ferredoxin 92.1 1.2 2.6E-05 44.8 10.3 148 241-396 19-190 (280)
252 cd02003 TPP_IolD Thiamine pyro 92.0 0.72 1.6E-05 44.2 8.4 114 278-396 36-181 (205)
253 PRK09628 oorB 2-oxoglutarate-a 91.9 3.2 7E-05 41.7 13.1 142 245-396 31-198 (277)
254 cd03372 TPP_ComE Thiamine pyro 91.9 2.6 5.7E-05 39.3 11.8 140 244-396 3-152 (179)
255 cd02013 TPP_Xsc_like Thiamine 91.8 0.82 1.8E-05 43.4 8.4 117 278-396 41-176 (196)
256 cd03375 TPP_OGFOR Thiamine pyr 90.9 6.2 0.00013 37.3 13.5 99 295-396 58-181 (193)
257 cd02006 TPP_Gcl Thiamine pyrop 90.5 1.1 2.3E-05 42.8 7.8 117 277-396 44-191 (202)
258 cd02002 TPP_BFDC Thiamine pyro 90.0 1.5 3.2E-05 40.7 8.3 115 278-396 38-176 (178)
259 cd03371 TPP_PpyrDC Thiamine py 89.8 11 0.00023 35.6 13.9 112 279-396 40-160 (188)
260 cd00568 TPP_enzymes Thiamine p 89.5 1.6 3.4E-05 40.0 7.9 100 293-396 51-166 (168)
261 COG1071 AcoA Pyruvate/2-oxoglu 89.0 2.4 5.1E-05 43.9 9.3 102 292-396 144-258 (358)
262 cd02007 TPP_DXS Thiamine pyrop 88.5 3.5 7.7E-05 39.1 9.7 97 294-397 81-188 (195)
263 cd02005 TPP_PDC_IPDC Thiamine 88.4 3.8 8.3E-05 38.4 9.8 115 278-396 38-171 (183)
264 cd07033 TPP_PYR_DXS_TK_like Py 88.3 3.4 7.4E-05 37.6 9.1 48 33-88 52-100 (156)
265 PRK11865 pyruvate ferredoxin o 87.9 6.7 0.00014 39.8 11.7 103 292-396 73-208 (299)
266 cd02012 TPP_TK Thiamine pyroph 87.7 4.7 0.0001 40.0 10.5 101 294-397 111-225 (255)
267 cd02008 TPP_IOR_alpha Thiamine 87.6 6.6 0.00014 36.5 10.8 99 295-396 58-174 (178)
268 TIGR03393 indolpyr_decarb indo 87.5 8.2 0.00018 42.8 13.3 148 246-400 4-167 (539)
269 TIGR03845 sulfopyru_alph sulfo 86.3 8.2 0.00018 35.2 10.4 51 30-88 44-95 (157)
270 PRK05778 2-oxoglutarate ferred 85.7 4.6 0.0001 41.1 9.2 102 293-396 75-200 (301)
271 cd01460 vWA_midasin VWA_Midasi 85.2 11 0.00024 37.6 11.5 65 24-88 132-205 (266)
272 PLN02980 2-oxoglutarate decarb 85.1 12 0.00026 47.3 14.2 149 244-398 302-466 (1655)
273 cd06586 TPP_enzyme_PYR Pyrimid 84.5 4.5 9.7E-05 36.3 7.8 48 32-88 47-96 (154)
274 PRK06154 hypothetical protein; 83.6 11 0.00024 42.1 11.9 114 281-400 55-177 (565)
275 PF00676 E1_dh: Dehydrogenase 82.2 4.8 0.0001 41.0 7.7 101 294-396 107-222 (300)
276 cd07036 TPP_PYR_E1-PDHc-beta_l 81.6 11 0.00023 34.9 9.1 34 161-199 130-164 (167)
277 PRK12315 1-deoxy-D-xylulose-5- 80.5 12 0.00025 42.0 10.6 110 285-397 111-241 (581)
278 KOG1184 Thiamine pyrophosphate 80.5 6.6 0.00014 42.2 8.0 150 245-400 6-171 (561)
279 TIGR03181 PDH_E1_alph_x pyruva 79.9 6.6 0.00014 40.8 7.9 101 292-396 130-243 (341)
280 PF02775 TPP_enzyme_C: Thiamin 79.6 3.4 7.5E-05 37.3 5.1 113 279-395 17-152 (153)
281 PRK05444 1-deoxy-D-xylulose-5- 79.3 12 0.00025 42.0 10.2 101 293-397 122-240 (580)
282 KOG1185 Thiamine pyrophosphate 78.6 48 0.001 35.7 13.5 121 275-399 46-173 (571)
283 COG3961 Pyruvate decarboxylase 78.5 11 0.00025 40.6 9.1 147 246-399 7-170 (557)
284 KOG0225 Pyruvate dehydrogenase 77.8 11 0.00024 38.2 8.2 88 307-399 189-287 (394)
285 cd07035 TPP_PYR_POX_like Pyrim 77.5 19 0.00042 32.3 9.4 50 32-88 46-96 (155)
286 PLN02790 transketolase 77.3 12 0.00027 42.4 9.7 78 317-397 152-236 (654)
287 PF02779 Transket_pyr: Transke 76.7 27 0.00058 32.4 10.4 38 161-201 133-171 (178)
288 cd03028 GRX_PICOT_like Glutare 74.3 8.8 0.00019 31.3 5.7 68 426-497 7-82 (90)
289 CHL00149 odpA pyruvate dehydro 72.9 20 0.00043 37.3 9.1 90 305-396 157-256 (341)
290 cd03027 GRX_DEP Glutaredoxin ( 72.4 10 0.00022 29.3 5.4 66 428-495 2-68 (73)
291 PRK05899 transketolase; Review 72.3 44 0.00096 37.8 12.5 88 306-397 151-246 (624)
292 TIGR00204 dxs 1-deoxy-D-xylulo 72.1 34 0.00073 38.7 11.4 49 33-89 365-414 (617)
293 COG3962 Acetolactate synthase 70.4 63 0.0014 34.6 11.8 156 238-399 6-189 (617)
294 PF02776 TPP_enzyme_N: Thiamin 69.8 48 0.001 30.4 10.2 49 32-88 51-101 (172)
295 PRK11892 pyruvate dehydrogenas 68.8 27 0.00059 37.9 9.4 30 165-199 280-309 (464)
296 cd02000 TPP_E1_PDC_ADC_BCADC T 67.8 22 0.00047 36.0 8.1 88 306-396 127-225 (293)
297 COG1165 MenD 2-succinyl-6-hydr 67.7 51 0.0011 36.1 10.9 131 251-384 17-152 (566)
298 TIGR00365 monothiol glutaredox 67.1 17 0.00036 30.2 5.9 71 426-497 11-86 (97)
299 PRK12753 transketolase; Review 65.4 44 0.00095 38.1 10.6 77 318-397 162-244 (663)
300 PTZ00089 transketolase; Provis 65.3 64 0.0014 36.8 11.9 78 317-397 163-247 (661)
301 PRK12571 1-deoxy-D-xylulose-5- 64.3 69 0.0015 36.4 11.9 48 33-88 374-422 (641)
302 cd07037 TPP_PYR_MenD Pyrimidin 62.8 74 0.0016 29.1 9.8 49 30-86 45-95 (162)
303 PLN02234 1-deoxy-D-xylulose-5- 62.7 62 0.0013 36.6 10.9 48 33-88 412-460 (641)
304 PLN02683 pyruvate dehydrogenas 62.4 50 0.0011 34.6 9.6 31 165-200 165-195 (356)
305 cd07034 TPP_PYR_PFOR_IOR-alpha 62.1 99 0.0021 27.8 10.6 49 32-88 53-101 (160)
306 PLN02269 Pyruvate dehydrogenas 61.4 48 0.001 34.7 9.2 100 295-397 145-257 (362)
307 TIGR00232 tktlase_bact transke 61.4 60 0.0013 36.9 10.8 49 33-88 409-457 (653)
308 cd01481 vWA_collagen_alpha3-VI 60.8 23 0.00051 32.4 6.2 55 429-486 110-164 (165)
309 PRK12754 transketolase; Review 60.6 67 0.0015 36.6 10.9 77 318-397 162-244 (663)
310 PLN02582 1-deoxy-D-xylulose-5- 59.5 99 0.0021 35.3 11.9 50 32-89 410-460 (677)
311 COG2089 SpsE Sialic acid synth 58.2 67 0.0015 32.8 9.1 76 424-500 145-227 (347)
312 PF03358 FMN_red: NADPH-depend 57.0 28 0.00061 31.0 5.9 64 437-500 16-93 (152)
313 COG2241 CobL Precorrin-6B meth 56.6 65 0.0014 30.9 8.4 74 452-527 114-188 (210)
314 KOG1145 Mitochondrial translat 55.4 1.3E+02 0.0029 33.1 11.2 36 49-85 226-261 (683)
315 cd00860 ThrRS_anticodon ThrRS 54.1 73 0.0016 25.2 7.5 58 428-487 3-61 (91)
316 cd07039 TPP_PYR_POX Pyrimidine 54.1 1.3E+02 0.0029 27.4 10.0 48 33-88 51-100 (164)
317 TIGR03182 PDH_E1_alph_y pyruva 53.5 40 0.00087 34.6 7.1 88 306-396 133-231 (315)
318 PRK07119 2-ketoisovalerate fer 53.1 21 0.00045 37.3 5.0 49 32-88 60-108 (352)
319 cd03418 GRX_GRXb_1_3_like Glut 52.5 44 0.00096 25.5 5.7 65 429-495 2-68 (75)
320 PLN02374 pyruvate dehydrogenas 52.1 1.1E+02 0.0024 32.9 10.2 89 306-396 224-322 (433)
321 PF01855 POR_N: Pyruvate flavo 51.8 79 0.0017 30.8 8.5 49 32-88 48-96 (230)
322 TIGR02190 GlrX-dom Glutaredoxi 50.9 64 0.0014 25.3 6.4 70 426-499 7-77 (79)
323 PF00456 Transketolase_N: Tran 50.9 55 0.0012 33.9 7.5 91 306-399 145-243 (332)
324 PF03129 HGTP_anticodon: Antic 50.3 63 0.0014 26.0 6.6 56 428-486 1-61 (94)
325 PLN02225 1-deoxy-D-xylulose-5- 50.2 1.3E+02 0.0028 34.5 10.8 49 32-88 435-484 (701)
326 PRK10638 glutaredoxin 3; Provi 50.2 51 0.0011 26.1 5.8 65 429-495 4-69 (83)
327 PRK08659 2-oxoglutarate ferred 50.0 1.4E+02 0.003 31.5 10.5 49 32-88 60-108 (376)
328 PRK08366 vorA 2-ketoisovalerat 49.3 1.6E+02 0.0035 31.2 10.9 47 32-86 61-107 (390)
329 COG3958 Transketolase, C-termi 48.2 1.1E+02 0.0025 30.8 8.8 60 24-91 52-113 (312)
330 PF03102 NeuB: NeuB family; I 48.1 1.7E+02 0.0038 28.7 10.2 69 429-498 115-190 (241)
331 TIGR03569 NeuB_NnaB N-acetylne 47.1 1.5E+02 0.0033 30.5 10.1 70 429-499 135-213 (329)
332 PRK09212 pyruvate dehydrogenas 46.1 1.2E+02 0.0027 31.1 9.3 31 165-200 142-172 (327)
333 CHL00144 odpB pyruvate dehydro 45.9 1.2E+02 0.0026 31.3 9.1 30 165-199 142-171 (327)
334 cd03033 ArsC_15kD Arsenate Red 45.5 53 0.0012 28.1 5.5 41 437-478 9-49 (113)
335 cd00858 GlyRS_anticodon GlyRS 44.3 1.1E+02 0.0023 26.3 7.3 56 428-487 28-87 (121)
336 cd00859 HisRS_anticodon HisRS 43.3 1.1E+02 0.0024 23.7 7.0 56 428-486 3-60 (91)
337 TIGR02181 GRX_bact Glutaredoxi 42.2 59 0.0013 25.2 5.0 61 436-497 7-68 (79)
338 COG1945 Pyruvoyl-dependent arg 42.0 17 0.00036 33.0 1.8 67 430-500 9-88 (163)
339 TIGR02691 arsC_pI258_fam arsen 42.0 37 0.00081 29.7 4.1 101 429-547 27-128 (129)
340 cd07038 TPP_PYR_PDC_IPDC_like 41.0 2.6E+02 0.0056 25.4 9.7 50 30-88 45-96 (162)
341 PRK09622 porA pyruvate flavodo 40.5 2.5E+02 0.0054 29.9 10.8 49 32-88 68-116 (407)
342 COG0021 TktA Transketolase [Ca 40.4 2.2E+02 0.0049 31.9 10.4 79 65-201 440-519 (663)
343 cd03035 ArsC_Yffb Arsenate Red 40.4 51 0.0011 27.8 4.5 42 437-479 8-49 (105)
344 TIGR02189 GlrX-like_plant Glut 40.3 1.1E+02 0.0024 25.3 6.6 67 427-495 8-78 (99)
345 PRK15473 cbiF cobalt-precorrin 39.9 1.9E+02 0.0042 28.5 9.3 59 469-530 155-215 (257)
346 PRK08367 porA pyruvate ferredo 39.8 1.7E+02 0.0038 31.0 9.4 46 32-85 62-107 (394)
347 PRK10853 putative reductase; P 39.5 48 0.001 28.6 4.3 40 438-478 10-49 (118)
348 cd03029 GRX_hybridPRX5 Glutare 39.1 1.5E+02 0.0033 22.4 6.9 62 429-493 3-65 (72)
349 TIGR02194 GlrX_NrdH Glutaredox 38.7 78 0.0017 24.2 5.1 55 438-493 9-64 (72)
350 COG0426 FpaA Uncharacterized f 37.8 1.5E+02 0.0032 31.3 8.3 48 433-483 256-303 (388)
351 cd02017 TPP_E1_EcPDC_like Thia 36.3 4.6E+02 0.01 27.7 11.6 52 317-371 162-218 (386)
352 KOG2862 Alanine-glyoxylate ami 35.9 3.7E+02 0.0081 27.6 10.2 129 421-553 87-230 (385)
353 cd00738 HGTP_anticodon HGTP an 35.7 1.7E+02 0.0037 23.2 6.9 57 428-487 3-64 (94)
354 PF01565 FAD_binding_4: FAD bi 35.4 1.6E+02 0.0035 25.5 7.3 76 367-445 3-81 (139)
355 TIGR01616 nitro_assoc nitrogen 34.6 75 0.0016 27.8 4.8 45 432-477 4-49 (126)
356 cd01080 NAD_bind_m-THF_DH_Cycl 34.4 1.1E+02 0.0025 28.1 6.2 54 425-486 43-96 (168)
357 PTZ00182 3-methyl-2-oxobutanat 34.4 2.6E+02 0.0056 29.2 9.6 30 165-199 173-202 (355)
358 PRK10026 arsenate reductase; P 34.4 71 0.0015 28.6 4.7 41 437-478 11-51 (141)
359 cd06063 H2MP_Cyano-H2up This g 34.3 1.5E+02 0.0032 26.5 6.9 56 429-488 1-62 (146)
360 PHA03050 glutaredoxin; Provisi 34.3 1.5E+02 0.0034 25.0 6.6 69 427-497 13-88 (108)
361 COG3959 Transketolase, N-termi 33.9 3.1E+02 0.0068 26.6 9.0 102 293-397 128-239 (243)
362 PF00590 TP_methylase: Tetrapy 33.2 70 0.0015 30.1 4.8 59 467-529 147-208 (210)
363 PF04273 DUF442: Putative phos 32.9 56 0.0012 27.8 3.6 42 161-203 53-96 (110)
364 COG0075 Serine-pyruvate aminot 32.7 1.6E+02 0.0035 31.0 7.7 81 421-504 75-161 (383)
365 COG0299 PurN Folate-dependent 32.7 1.3E+02 0.0028 28.5 6.2 96 172-286 9-107 (200)
366 PRK03767 NAD(P)H:quinone oxido 32.5 1.8E+02 0.0039 27.4 7.5 67 436-503 14-95 (200)
367 PF03960 ArsC: ArsC family; I 32.1 80 0.0017 26.6 4.5 39 438-477 6-44 (110)
368 PF00731 AIRC: AIR carboxylase 31.7 3E+02 0.0066 24.9 8.3 70 428-499 2-76 (150)
369 TIGR00014 arsC arsenate reduct 31.7 85 0.0018 26.8 4.6 41 437-478 8-48 (114)
370 cd06068 H2MP_like-1 Putative [ 31.6 1.6E+02 0.0035 26.1 6.7 55 431-488 2-62 (144)
371 cd03034 ArsC_ArsC Arsenate Red 31.6 86 0.0019 26.6 4.6 41 437-478 8-48 (112)
372 cd02016 TPP_E1_OGDC_like Thiam 31.5 2.3E+02 0.005 28.3 8.2 77 318-396 157-243 (265)
373 PF11823 DUF3343: Protein of u 31.2 89 0.0019 24.2 4.3 25 437-461 10-34 (73)
374 cd00861 ProRS_anticodon_short 31.2 2.1E+02 0.0045 22.8 6.8 58 428-487 3-64 (94)
375 TIGR03586 PseI pseudaminic aci 30.8 4.9E+02 0.011 26.8 10.7 70 429-499 136-212 (327)
376 TIGR02690 resist_ArsH arsenica 30.7 2.4E+02 0.0052 27.3 8.0 62 439-500 44-113 (219)
377 cd00115 LMWPc Substituted upda 30.5 1.2E+02 0.0026 26.7 5.6 86 442-549 48-140 (141)
378 PF10740 DUF2529: Protein of u 30.3 1.3E+02 0.0028 27.9 5.6 121 374-499 24-158 (172)
379 PRK10329 glutaredoxin-like pro 30.3 1.9E+02 0.0042 22.9 6.2 60 429-493 3-65 (81)
380 TIGR03710 OAFO_sf 2-oxoacid:ac 30.3 1.6E+02 0.0035 32.9 7.7 49 32-88 249-297 (562)
381 PF00258 Flavodoxin_1: Flavodo 30.1 1.2E+02 0.0026 26.5 5.6 47 435-486 8-54 (143)
382 smart00226 LMWPc Low molecular 29.4 1.4E+02 0.0029 26.3 5.7 38 442-487 44-81 (140)
383 PRK11200 grxA glutaredoxin 1; 29.2 2.2E+02 0.0047 22.4 6.4 71 429-502 3-81 (85)
384 KOG0523 Transketolase [Carbohy 28.8 62 0.0013 35.8 3.8 63 149-212 229-291 (632)
385 PRK10264 hydrogenase 1 maturat 28.5 2.2E+02 0.0047 27.0 7.2 56 427-486 4-66 (195)
386 PRK10824 glutaredoxin-4; Provi 28.3 1.9E+02 0.0042 24.8 6.1 70 427-497 15-89 (115)
387 COG0655 WrbA Multimeric flavod 28.1 2.4E+02 0.0052 26.7 7.6 69 434-502 13-100 (207)
388 COG0543 UbiB 2-polyprenylpheno 27.9 2.5E+02 0.0054 27.6 7.9 72 416-488 96-172 (252)
389 cd02977 ArsC_family Arsenate R 27.7 1.1E+02 0.0025 25.3 4.7 41 437-478 8-48 (105)
390 cd06062 H2MP_MemB-H2up Endopep 27.3 2.4E+02 0.0052 25.1 7.0 55 429-487 1-62 (146)
391 COG0695 GrxC Glutaredoxin and 27.3 1.5E+02 0.0032 23.5 5.0 62 429-491 3-66 (80)
392 COG4032 Predicted thiamine-pyr 27.0 1.3E+02 0.0028 26.9 4.8 49 33-89 55-104 (172)
393 COG1154 Dxs Deoxyxylulose-5-ph 26.9 6.9E+02 0.015 28.0 11.3 53 32-91 370-422 (627)
394 PRK10569 NAD(P)H-dependent FMN 26.8 3.2E+02 0.007 25.6 8.0 62 439-500 18-89 (191)
395 COG0680 HyaD Ni,Fe-hydrogenase 26.8 1.2E+02 0.0026 27.8 4.8 56 427-486 2-64 (160)
396 PRK11544 hycI hydrogenase 3 ma 26.7 2.8E+02 0.0062 25.0 7.4 56 428-486 2-63 (156)
397 COG1393 ArsC Arsenate reductas 26.2 1.6E+02 0.0036 25.3 5.4 40 438-478 11-50 (117)
398 PF02254 TrkA_N: TrkA-N domain 26.2 2.2E+02 0.0047 23.7 6.3 30 429-461 1-30 (116)
399 cd03032 ArsC_Spx Arsenate Redu 26.1 1.1E+02 0.0025 25.9 4.4 41 436-477 8-48 (115)
400 COG1691 NCAIR mutase (PurE)-re 26.1 6.2E+02 0.014 24.7 11.0 72 427-500 118-194 (254)
401 PRK10466 hybD hydrogenase 2 ma 25.8 3.1E+02 0.0068 25.0 7.6 57 428-488 2-65 (164)
402 PF00289 CPSase_L_chain: Carba 25.1 2.9E+02 0.0062 23.4 6.7 49 428-485 4-52 (110)
403 PRK14994 SAM-dependent 16S rib 24.7 3.1E+02 0.0067 27.7 7.9 16 471-486 156-171 (287)
404 cd05564 PTS_IIB_chitobiose_lic 24.6 3.9E+02 0.0085 21.9 8.5 35 443-483 18-52 (96)
405 TIGR00142 hycI hydrogenase mat 24.3 2.3E+02 0.005 25.2 6.3 54 429-486 1-62 (146)
406 cd05569 PTS_IIB_fructose PTS_I 24.2 3.4E+02 0.0074 22.2 6.8 55 429-487 2-63 (96)
407 TIGR03186 AKGDH_not_PDH alpha- 23.9 6.4E+02 0.014 29.9 11.0 51 318-371 234-289 (889)
408 PRK13344 spxA transcriptional 23.8 1.4E+02 0.003 26.3 4.7 42 436-478 8-49 (132)
409 PRK13683 hypothetical protein; 23.8 1.1E+02 0.0024 24.7 3.5 33 174-208 22-54 (87)
410 TIGR00130 frhD coenzyme F420-r 23.5 2.4E+02 0.0053 25.3 6.3 58 427-487 3-70 (153)
411 cd03036 ArsC_like Arsenate Red 23.3 1.4E+02 0.0031 25.2 4.5 41 437-478 8-48 (111)
412 cd03409 Chelatase_Class_II Cla 23.0 2.9E+02 0.0062 22.3 6.3 60 429-488 2-69 (101)
413 cd00518 H2MP Hydrogenase speci 23.0 3E+02 0.0064 24.2 6.7 54 431-488 2-61 (139)
414 PF03853 YjeF_N: YjeF-related 22.9 2.4E+02 0.0051 25.9 6.2 41 429-469 29-69 (169)
415 COG1104 NifS Cysteine sulfinat 22.4 2E+02 0.0044 30.3 6.1 75 430-504 93-171 (386)
416 cd03415 CbiX_CbiC Archaeal sir 21.7 4.7E+02 0.01 22.8 7.5 57 428-484 2-64 (125)
417 cd05125 Mth938_2P1-like Mth938 21.7 1.4E+02 0.003 25.7 4.0 37 425-461 53-90 (114)
418 PRK12559 transcriptional regul 21.2 1.7E+02 0.0037 25.7 4.7 40 437-477 9-48 (131)
419 PRK09627 oorA 2-oxoglutarate-a 21.2 1.5E+02 0.0033 31.2 5.0 48 32-87 59-106 (375)
420 TIGR00173 menD 2-succinyl-5-en 21.1 5E+02 0.011 27.7 9.2 46 33-86 51-98 (432)
421 PRK09004 FMN-binding protein M 21.0 5.9E+02 0.013 22.6 10.9 81 430-519 4-92 (146)
422 PF04430 DUF498: Protein of un 20.5 78 0.0017 26.8 2.3 37 425-461 52-89 (110)
423 PF00670 AdoHcyase_NAD: S-aden 20.5 1.6E+02 0.0035 27.0 4.4 58 425-485 22-86 (162)
424 smart00861 Transket_pyr Transk 20.3 6.4E+02 0.014 22.7 11.0 32 165-200 133-164 (168)
425 cd06070 H2MP_like-2 Putative [ 20.1 3.3E+02 0.0072 24.0 6.4 52 431-488 2-57 (140)
426 TIGR01162 purE phosphoribosyla 20.1 6.7E+02 0.015 22.9 9.3 25 432-456 5-29 (156)
427 PF14258 DUF4350: Domain of un 20.1 2.9E+02 0.0063 20.8 5.3 50 443-501 9-61 (70)
428 cd01452 VWA_26S_proteasome_sub 20.1 3E+02 0.0065 25.9 6.3 55 429-484 111-172 (187)
No 1
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=8.2e-103 Score=853.98 Aligned_cols=560 Identities=93% Similarity=1.414 Sum_probs=512.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.||||+||++|||++.+++++.|++||+|++++.|+|+|+|.++.+.+++|||++|||++++|++|||++.|+.+++|+
T Consensus 118 l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~l 197 (677)
T PLN02582 118 MHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 197 (677)
T ss_pred hcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+++|+++...+|..+++|.++++|.+++.++.|..+|...+.+.+.......++.++++...++++.|....+
T Consensus 198 i~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 277 (677)
T PLN02582 198 IVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 277 (677)
T ss_pred EEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccch
Confidence 99999999669988888999999999999999999999999999999888776654456677777788888877643478
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
|+++||.|++++||||+++|.++++++++...++|++||++|.||+|++++|.++.+||+..+||++++++.+......+
T Consensus 278 fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~~~~g~~~~~~~~~~~ 357 (677)
T PLN02582 278 FEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKVKAKTQS 357 (677)
T ss_pred HHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCCcccCCccCCCCCCcC
Confidence 99999999999999999999999999997322689999999999999999999988999999999999876543233468
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|.++++++|.+++++||+++++++|+++++++..|+++||+||+|+||+|++|+++|+|+|+.|+|||+++|++|++|++
T Consensus 358 ~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~fs~Fl~RA~ 437 (677)
T PLN02582 358 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGY 437 (677)
T ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEecHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
|||++++|++++||+++++++|+.|.+|+|||+.+|+++++++||++|++|+|+.|++.++++|+...++|+|||++|..
T Consensus 438 DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~ 517 (677)
T PLN02582 438 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 517 (677)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 99999999999999999999998889999999999999999999999999999999999999998756799999999986
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
.....+|+....+.+++|+++++++|+|++||++|++++.|++|++.|+++|++++|||++|++|||++++.+++++++.
T Consensus 518 ~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~ 597 (677)
T PLN02582 518 GIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEV 597 (677)
T ss_pred CCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCE
Confidence 33222333222346789999999999999999999999999999999999999999999999999999999998898999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhccccccccccc
Q 008493 481 LITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 560 (563)
Q Consensus 481 vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~~~~~~~~ 560 (563)
||++|++..||||+.|++.+.+++....+.+++++|++|+|+++|+.+++++++|||++.|+++|+++++..+..+.|||
T Consensus 598 vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~~~~~~~~~~~ 677 (677)
T PLN02582 598 LITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVLGQTREALQIMS 677 (677)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHHhcccccccccC
Confidence 99999998899999999999987642223688999999999999999999999999999999999999976667999986
No 2
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=4.9e-100 Score=789.71 Aligned_cols=534 Identities=56% Similarity=0.908 Sum_probs=499.6
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhc-ccCCC
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSD 79 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~-~~~~p 79 (563)
|+|+||++|++|||+|.||.||.|++||.++++++|+|+|.|..+.+.+++|||++|||+++.||+|||||.|+ ..+.|
T Consensus 89 f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~ 168 (627)
T COG1154 89 FDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN 168 (627)
T ss_pred cchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 44589
Q ss_pred EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcc
Q 008493 80 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 159 (563)
Q Consensus 80 li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (563)
+++|++||+ +|| .+++|+++++|.+++..+-|..+++..+.+....+....+..++.+...|+++.+. .
T Consensus 169 ~iVILNDNe-MSI--------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~--~ 237 (627)
T COG1154 169 LIVILNDNE-MSI--------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPG--T 237 (627)
T ss_pred EEEEEeCCC-ccc--------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCch--h
Confidence 999999999 675 57899999999999999999999999988887766667778888888888887763 8
Q ss_pred hhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCC-CCCccCCCCccc
Q 008493 160 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-ATGKQFKSSART 238 (563)
Q Consensus 160 ~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~-~~~~~~~~~~~~ 238 (563)
+||++|++|++++||||+++|..+++.++. .++|+++||.|.||+||++||.++.+||++.+|++ .+|+..++....
T Consensus 238 lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~~~~~~~~ 315 (627)
T COG1154 238 LFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQSKKSKPSA 315 (627)
T ss_pred hHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCccCCCCCCC
Confidence 899999999999999999999999999998 68999999999999999999999999999999996 888865555567
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHH
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQR 318 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~ 318 (563)
++|.++|++.|.+++++|++++.+++.+...+++..|+++||+||+|+||+||+++++|+|+|..|+||++++|++|+||
T Consensus 316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQR 395 (627)
T COG1154 316 PSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQR 395 (627)
T ss_pred CCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecC
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~ 398 (563)
++||++++.|.+++||+++.+++|++|.+|+|||+.+|+++++.+||+.|++|+|.+|+..++.+|+..+++|+.||.||
T Consensus 396 AYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPr 475 (627)
T COG1154 396 AYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPR 475 (627)
T ss_pred HHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777999999999
Q ss_pred CCCCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 399 GNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 399 ~~~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
......... ......++||+.++++|.|++|+++|.++..|++|++.|.+.||++.|||+++++|+|++.++++.+.+
T Consensus 476 g~~~~~~~~--~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h 553 (627)
T COG1154 476 GNGVGVILT--PELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSH 553 (627)
T ss_pred CCCCCCCcc--cccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhc
Confidence 864332111 123567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhccc
Q 008493 479 EVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 552 (563)
Q Consensus 479 ~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~ 552 (563)
+.+|++||+. .||+|+.|.+++...++ ..+++++|++|.|.+.|++++++..+|||++.|.++|.+++...
T Consensus 554 ~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~~~ 625 (627)
T COG1154 554 DLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLKAR 625 (627)
T ss_pred CeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 9999999998 89999999999999876 37899999999999999999999999999999999999988654
No 3
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-99 Score=820.80 Aligned_cols=536 Identities=60% Similarity=1.018 Sum_probs=487.7
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|++ ||++|++|||++.||+||.|++||.++++++|+|+|.|+.+++.+++||++||||++..||++||||.|+..+.|+
T Consensus 164 f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~l 242 (701)
T PLN02225 164 IPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNM 242 (701)
T ss_pred cCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCE
Confidence 677 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
|+|++||+ +||..+...|...++|++++++.+++.++.|+.++...+.+.+..+..+....++++.++|+++.+....+
T Consensus 243 ivILNDN~-mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 321 (701)
T PLN02225 243 IVILNDSR-HSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTL 321 (701)
T ss_pred EEEEeCCC-CCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCc
Confidence 99999999 68755433334445999999999999999999999999998887766677888888999999887643479
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
||++|+.|++++||||+++|.++|+++++...++|++|||.|.||+ |+++|+.. .....++
T Consensus 322 Fe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk------------------d~~tg~~~-~~~~~~s 382 (701)
T PLN02225 322 FEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR------------------DAETGKNI-MVKDRRT 382 (701)
T ss_pred HHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC------------------CCCCCCcC-CCCCCcC
Confidence 9999999999999999999999999999843359999999999998 23445422 2123468
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++|+++|.+++++|++++++++|+..++++..|+++||+||+|+||+||+|+++|+|+|+.|+|||+++|++|++|++
T Consensus 383 ~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iystFlqRAy 462 (701)
T PLN02225 383 YSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAY 462 (701)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehhHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
|||++++|++++||+++++++|++|.+|+|||+.+|+++++.+||++|++|+|+.|++.++++|+...++|+|||++|..
T Consensus 463 DQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~ 542 (701)
T PLN02225 463 DQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVCFRFPRGS 542 (701)
T ss_pred HHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 99999999999999999999998889999999999999999999999999999999999999988666799999999986
Q ss_pred CCCcc--CCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 401 GIGVE--LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 401 ~~~~~--~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
..... ++ ..+.+++||++++++|+|++||++|+++..|++|++.|+++||+++|||+++++|+|++.|.++++++
T Consensus 543 ~~~~~~~~~---~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~ 619 (701)
T PLN02225 543 IVNMNYLVP---TGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNH 619 (701)
T ss_pred cCCCCcCCC---CCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhc
Confidence 43321 12 23678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhccccccccc
Q 008493 479 EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEI 558 (563)
Q Consensus 479 ~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~~~~~~ 558 (563)
+.|||+||+..||+|++|++++.++++.+.+.+++++|++|+|+++|+++++++++|||++.|+++|+++++..+++|+.
T Consensus 620 ~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~~~~~~~~~ 699 (701)
T PLN02225 620 KFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTREALLL 699 (701)
T ss_pred CeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHhhcccceEe
Confidence 99999999988999999999999986432246889999999999999999999999999999999999999888999999
Q ss_pred cc
Q 008493 559 MS 560 (563)
Q Consensus 559 ~~ 560 (563)
||
T Consensus 700 ~~ 701 (701)
T PLN02225 700 MS 701 (701)
T ss_pred cC
Confidence 86
No 4
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.3e-94 Score=792.10 Aligned_cols=531 Identities=51% Similarity=0.823 Sum_probs=481.3
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.||||+||++|||++.++.++.+++||+|+++++|+|+|+|.++.+++.+|+|++|||++++|++|||+++|+.+++|+
T Consensus 85 l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~ 164 (617)
T TIGR00204 85 FSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM 164 (617)
T ss_pred hcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE
Confidence 57999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+ ++++ .+++.++.+|.++|.++.|..++...+.+.+..+.....+.++.+..+|+++.+ ..+
T Consensus 165 i~ii~~N~-~~i~--------~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~ 233 (617)
T TIGR00204 165 IVILNDNE-MSIS--------ENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP--GTF 233 (617)
T ss_pred EEEEECCC-cccC--------CCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--cch
Confidence 99999999 5653 346778999999999999999998887776644332333777777788887776 378
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
|+++||++++++||||+++|.++++++++ .++|++||++|.||+|++++|.++..||+.++|+++++..........+
T Consensus 234 f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 311 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKSALPS 311 (617)
T ss_pred HHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCCCCcc
Confidence 99999999888999999999999999987 5789999999999999999887767799999999888764322233468
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++|++++++++|+.+++++.+|+++||+||+|+||+|++|+++|+|+|+.|++||+++|++|++|++
T Consensus 312 ~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl~ra~ 391 (617)
T TIGR00204 312 YSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFLQRAY 391 (617)
T ss_pred HHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHHHHHH
Confidence 99999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
|||++++|++++||+++++++|+.|.+|+|||+.+|+++++++||++|++|+|+.|++.++++|++..++|+|||++|..
T Consensus 392 dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 392 DQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRYPRGN 471 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCC
Confidence 99999999999999999999988888999999999999999999999999999999999999998755699999999976
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
......+ ...+.+++|++.++++|+|++||++|.+++.|++|++.|+++|++++|||++|++|||++++.++++++++
T Consensus 472 ~~~~~~~--~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~ 549 (617)
T TIGR00204 472 AVGVELT--PEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEK 549 (617)
T ss_pred cCCcccC--CccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCe
Confidence 4322221 12367889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 481 LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 481 vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
|||+||+. .||+|++|++++.++++ +.+++++|+++.|+++|+.+++++++|||++.|+++|++++
T Consensus 550 vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 550 LVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred EEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 99999997 79999999999999863 56899999999999999999999999999999999999875
No 5
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.6e-93 Score=783.80 Aligned_cols=539 Identities=58% Similarity=0.940 Sum_probs=486.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.||||.||++|||++.++++++++.|+.|++++.|+|+|+|.++.+++++|||++|||++++|++||++++|+.+++|+
T Consensus 93 l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~l 172 (641)
T PRK12571 93 FRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRL 172 (641)
T ss_pred HhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCE
Confidence 57999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++|++||+ ++++ .+++.++++++.++..+.|..++...+++......++..+.++++..+++++.+ ...
T Consensus 173 i~I~dnN~-~~i~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 241 (641)
T PRK12571 173 IVILNDNE-MSIA--------PPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGG--GTL 241 (641)
T ss_pred EEEEECCC-eeec--------CCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccch--hhH
Confidence 99999999 5653 236778889999999999999999998887776666666777888888877764 467
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
|++|||++++++||||+++|.++++++++. .++|++|+++|.||+|++++|.+..+|||.++|+..+++.........+
T Consensus 242 f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~~~~~~~~~~~ 320 (641)
T PRK12571 242 FEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGLQKKSAPSAPS 320 (641)
T ss_pred HHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCcccCCCccchh
Confidence 999999999888999999999999999862 4789999999999999999888778999999999888764333233468
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++||+++++++|+.+++++..|+++||+||+|+||+|++|+++|+|+|+.|+|||+++|++|++|++
T Consensus 321 ~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~~Fl~ra~ 400 (641)
T PRK12571 321 YTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYSTFLQRGY 400 (641)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEEehHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
|||+++++++++||++++++.|++|.+|+|||+.+|+++++++||++|++|+|+.|++.++++|++..++|+|||++|+.
T Consensus 401 dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~ 480 (641)
T PRK12571 401 DQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGE 480 (641)
T ss_pred HHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCc
Confidence 99999999999999999999898889999999999999999999999999999999999999998755899999999986
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
.....+|+ ..+.++++|+.++++|+|++||++|++++.|++|++.|+++|++++|||+++|+|||++++.++.++. +
T Consensus 481 ~~~~~~~~--~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k~~-~ 557 (641)
T PRK12571 481 GVGVEIPA--EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHH-I 557 (641)
T ss_pred CCccccCC--CCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhhhC-C
Confidence 53333333 23457899999999999999999999999999999999999999999999999999999998877766 5
Q ss_pred EEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhccccc
Q 008493 481 LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 554 (563)
Q Consensus 481 vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~~ 554 (563)
++++||+. .||||++|++.+.++++.+++.+++++|++|.|+++|+.+++++++|+|++.|+++|+++++..++
T Consensus 558 vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~l~~~~~ 632 (641)
T PRK12571 558 VVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGALARLSG 632 (641)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 66777765 799999999999998765446789999999999999999999999999999999999999977665
No 6
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.7e-93 Score=771.09 Aligned_cols=485 Identities=82% Similarity=1.268 Sum_probs=442.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.||||.||++|||++.+++++.|++||+|++|++|+|+|+|.++.+.+++|||++|||++++|++||||+.|+..+.|+
T Consensus 151 l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nl 230 (641)
T PLN02234 151 MKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNM 230 (641)
T ss_pred hcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999778999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++|+++|++++++|...+|+.++++.++++|.+++.++.|.. ++.. .+
T Consensus 231 ivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~----------------~~ 278 (641)
T PLN02234 231 IVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS----------------TL 278 (641)
T ss_pred EEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH----------------HH
Confidence 999999997788888889999999999999999998887732 1122 33
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
|++|||.+++++||||+++|.+++++++..+.++|++|+++|.||+|++++|.+..+||+..+||++++++.......++
T Consensus 279 fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~s 358 (641)
T PLN02234 279 FEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQS 358 (641)
T ss_pred HHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCCC
Confidence 99999999999999999999999999886433589999999999999999998778999999999999987654444578
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++||+++++++|+++++++..|+++||+||+|+||+|++|+++|+|+|+.|+|||+++|++|++|++
T Consensus 359 y~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~ 438 (641)
T PLN02234 359 YTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAY 438 (641)
T ss_pred HHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
|||+++++++++||+++++++|+.|.+|+|||+.+|+++++++||++|++|+|+.|++.++++|+...++|++||++|..
T Consensus 439 DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 439 DQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGN 518 (641)
T ss_pred HHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeeccc
Confidence 99999999999999999988888888999999999999999999999999999999999999988766799999999987
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
.....+|+....+.+++||++++++|+|++||++|++++.|++|++.|+++||+++|||+++++|||++.+.++.++++.
T Consensus 519 ~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~ 598 (641)
T PLN02234 519 GIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEV 598 (641)
T ss_pred ccccccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCE
Confidence 54333443222346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeec
Q 008493 481 LITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVL 517 (563)
Q Consensus 481 vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~ 517 (563)
||++|++..||+|++|++.+.++++++...++.+-.+
T Consensus 599 vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~~~~~ 635 (641)
T PLN02234 599 LITVEEGSIGGFGSHVVQFLALDGLLDGKLKVYRTWI 635 (641)
T ss_pred EEEECCCCCCcHHHHHHHHHHHcCCCCCCceEEEEEe
Confidence 9999999889999999999999988766666665443
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.8e-88 Score=741.52 Aligned_cols=492 Identities=33% Similarity=0.563 Sum_probs=435.5
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
+.++|++|+++||+++.+++|+.++.|+.|.++|+|+|+|+|.++.+.+++|||++|||++++|++|||||+|+.|++|+
T Consensus 87 ~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~l 166 (581)
T PRK12315 87 FLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNL 166 (581)
T ss_pred hhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCE
Confidence 35678899999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+ +++.+. ++.+++.+.+.+..+. .+...+
T Consensus 167 i~Ii~dN~-~si~~~--------~~~~~~~l~~~~~~~~-----------------------------------~~~~~~ 202 (581)
T PRK12315 167 IIIVNDNQ-MSIAEN--------HGGLYKNLKELRDTNG-----------------------------------QSENNL 202 (581)
T ss_pred EEEEECCC-CcCCCC--------Cchhhhhhhhhhhccc-----------------------------------ccHHHH
Confidence 99999999 676432 2333222222111000 011234
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
+++|||++++++||||++++.++++++++ .++|++|+++|.||+|+++++++...||+..+|+..+++..++.. ..+
T Consensus 203 ~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~~-~~~ 279 (581)
T PRK12315 203 FKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPAS-GES 279 (581)
T ss_pred HHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCCC-CcC
Confidence 89999999987899999999999999987 679999999999999998777777889999899988876443322 568
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++|++++++++|+++++++..|.++||+||+|+||+|++|+++|+|+|+.|+|||+.+|++|++|++
T Consensus 280 ~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~Fl~ra~ 359 (581)
T PRK12315 280 YSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTFLQRAY 359 (581)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
||++++++++++||+++++++|+.+ +|+|||+.+|+++++++||++|++|+|+.|++.++++|++..++|+|||++|..
T Consensus 360 dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 360 DQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIRVPEHG 438 (581)
T ss_pred HHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCc
Confidence 9999999999999999999988866 999999999999999999999999999999999999998755799999999987
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhC-CCceEEeeccccccCcHHHHHHHhccCC
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALIRSLAKSHE 479 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~-Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~ 479 (563)
+... +... ..+..+++.++++|+|++||++|++++.|++|++.|+++ ||+++|||++|++|||++.+.++.++++
T Consensus 439 ~~~~--~~~~--~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~~~~~ 514 (581)
T PRK12315 439 VESG--PTVD--TDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKEDHE 514 (581)
T ss_pred cCCC--CCCc--cCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHHhhCC
Confidence 5331 1111 123446888999999999999999999999999999988 9999999999999999999988888889
Q ss_pred EEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 480 VLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 480 ~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
.||++|++. .||||++|++.+.+++ .+++++|++++|+.+|+.+++++++|||++.|+++|++++
T Consensus 515 ~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 515 LVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred EEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 999999987 7999999999998763 5789999999999999999999999999999999999876
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.2e-86 Score=726.75 Aligned_cols=487 Identities=61% Similarity=0.961 Sum_probs=431.6
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhc-CCCCcEEEEEcccccccchhHHHHHhhcccCCC
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD 79 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~-~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~p 79 (563)
|.+|||.|+++|||++.+++++.+++|++|+++|+|+|+|+|.++. +++++|||++|||+++||++||++++|+.+++|
T Consensus 91 l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~n 170 (580)
T PRK05444 91 FDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSD 170 (580)
T ss_pred hcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCC
Confidence 5789999999999999889999999999999999999999999988 578999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcc
Q 008493 80 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 159 (563)
Q Consensus 80 li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (563)
+++|++||+ +++.+.. +.....+. ..++ ..
T Consensus 171 li~IvdnN~-~~i~~~~--------~~~~~~~~-------------------------~~~~----------------~~ 200 (580)
T PRK05444 171 LIVILNDNE-MSISPNV--------GALSNYLA-------------------------RLRS----------------ST 200 (580)
T ss_pred EEEEEECCC-CcCCCcc--------hhhhhhhc-------------------------cccH----------------HH
Confidence 999999998 5553321 10000000 0111 13
Q ss_pred hhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCC-Cccc
Q 008493 160 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKS-SART 238 (563)
Q Consensus 160 ~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~-~~~~ 238 (563)
+++++||+++.++||+|++++.++++++++ .++|++|+++|.||+|++..|+++..||+.++|+...++...+ ....
T Consensus 201 ~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~ 278 (580)
T PRK05444 201 LFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKSSKPGK 278 (580)
T ss_pred HHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCCccccCCCCc
Confidence 489999999877899999999999999987 5799999999999999998877677899999888765543322 1123
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHH
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQR 318 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~ 318 (563)
.+|+++++++|.+++++||+++++++|+.+++++..|+++||+||+|+||+|++|+++|+|+|+.|++||+++|++|+.|
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~~F~~r 358 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQR 358 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeHHHHHH
Confidence 68999999999999999999999999998777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecC
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~ 398 (563)
++||++++++++++||+++++++|+++.+|+|||+.+|+++++++||++|++|+|++|++.++++|++..++|+|||++|
T Consensus 359 a~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r 438 (580)
T PRK05444 359 AYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRYPR 438 (580)
T ss_pred HHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999998887889999999999999999999999999999999999999997668999999999
Q ss_pred CCCCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 399 GNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 399 ~~~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
..+.....+ +.+.+++|+++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||++++.++++++
T Consensus 439 ~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~~~~~~~ 511 (580)
T PRK05444 439 GNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKH 511 (580)
T ss_pred CCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHHHHHhcC
Confidence 875432222 145688999999999999999999999999999999995 8999999999999999999999999
Q ss_pred CEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 479 EVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 479 ~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
+++|++|++. .||||++|++.+.++++ +.++.++|+++.|+++|+.+++++++|||+++|+++|++++
T Consensus 512 ~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 580 (580)
T PRK05444 512 DLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILELL 580 (580)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHhhC
Confidence 9999999998 59999999999998864 46899999999999999999999999999999999998753
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-77 Score=618.09 Aligned_cols=486 Identities=35% Similarity=0.517 Sum_probs=411.2
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC-CCcEEEEEcccccccchhHHHHHhhcccCC
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVIGDGAMTAGQAYEAMNNAGYLDS 78 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~-~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~ 78 (563)
|.+|||.++ +.|||. .+++++.+++|++|++++.|+|+|++.++.++ +++|+|++|||+++||++||||++|+++++
T Consensus 92 l~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~l 170 (632)
T KOG0523|consen 92 LKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKL 170 (632)
T ss_pred HHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhccc
Confidence 468999998 777776 47899999999999999999999999999988 899999999999999999999999999995
Q ss_pred -CEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCC
Q 008493 79 -DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSG 157 (563)
Q Consensus 79 -pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (563)
||++|.+||. .++++.+..+...++. +
T Consensus 171 dnLVai~D~n~-is~~g~t~~~~~~dV~-------------------------------------~-------------- 198 (632)
T KOG0523|consen 171 DNLVAIYDNNK-ISIDGATSLGFDEDVY-------------------------------------Q-------------- 198 (632)
T ss_pred CCEEEEEcccc-ccCCCCCcccccccHH-------------------------------------H--------------
Confidence 5555555555 8886665554433222 1
Q ss_pred cchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-------------C
Q 008493 158 STLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK-------------F 224 (563)
Q Consensus 158 ~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~-------------f 224 (563)
..++++||+.. .++|+|.+++.+++.+|+.. .++|+.|.++|.+|+|....+ ++.|||.+. |
T Consensus 199 -~r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~pl~~~~~~~~k~~~~~ 273 (632)
T KOG0523|consen 199 -LRFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAPLGEDDVERVKSIKGL 273 (632)
T ss_pred -HHHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCcchhhHHHHHHhhcCC
Confidence 12899999988 78999999999999999853 688999999999999976543 578999861 2
Q ss_pred CCC-------CC--------------------------ccCCCCcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC
Q 008493 225 DPA-------TG--------------------------KQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG 271 (563)
Q Consensus 225 ~~~-------~~--------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~ 271 (563)
|. ++ .......+...+|+++.++|.++.+.+|+++.+++|+..|+.
T Consensus 274 -P~~~~~v~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~ 352 (632)
T KOG0523|consen 274 -PVLIFVVPEKVKLYPEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTL 352 (632)
T ss_pred -cceeEEeccccccCCCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCch
Confidence 10 00 001112234678999999999999999999999999999998
Q ss_pred hHHHHHhCCCCeeecccchHHHHHHHHHHhhCCC-eeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCC
Q 008493 272 LNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGP 349 (563)
Q Consensus 272 ~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~-~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~ 349 (563)
++-|.++||+|||++||+||+|+++|+|+|..|. +||+.||+.|++||+||++ +.+..+.+++++++|.+. .|+|||
T Consensus 353 td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr-~~a~s~~~v~~v~th~~i~~GeDGP 431 (632)
T KOG0523|consen 353 TDFFPKRFPERFIECGIAEQNMVGIANGIACRGRTIPFCGTFAAFFTRAFDQVR-MGALSQANVIYVATHDSIGLGEDGP 431 (632)
T ss_pred hhhccccCccceEEEeeehhhhHHhhhchhcCCCccchhHHHHHHHHHhhhhee-ehhhccCCcEEEEEeccccccCCCc
Confidence 8888899999999999999999999999999997 9999999999999999995 679999999999999877 799999
Q ss_pred CCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCceE-EEeeCC-
Q 008493 350 THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIEGE- 427 (563)
Q Consensus 350 tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~-~l~~g~- 427 (563)
|||+.+|+++||++||++|++|+|..|+..++..|++....|.+++++|+..... + ....+.+|++. +++++.
T Consensus 432 th~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~--~---~~~~~~igkg~~vl~~~~~ 506 (632)
T KOG0523|consen 432 THQPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIY--N---NTEIEEIGKGKYVLQEVEP 506 (632)
T ss_pred ccccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcCCCeeEEEecCcccccc--C---CCchhhhccccEEEecCCC
Confidence 9999999999999999999999999999999999999888899999999875432 1 23346788874 788887
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCC-EEEEEeCCC-CCChHHHHHHHHHHcCC
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE-VLITVEEGS-IGGFGSHVVQFLAQDGL 505 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~-~vvvvE~~~-~gg~g~~v~~~l~~~~~ 505 (563)
||+||++|+++++|++|++.|+++||+++|+|+++++|||...|+++.+..+ ++.|+|++. .|+++..+......-
T Consensus 507 dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~-- 584 (632)
T KOG0523|consen 507 DVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY-- 584 (632)
T ss_pred CEEEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc--
Confidence 9999999999999999999999999999999999999999999999998875 566667676 467766555444321
Q ss_pred CCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhccccccc
Q 008493 506 LDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 556 (563)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~~~~ 556 (563)
+ ...+..++ .++|+.+|++.++++.+|++++.|++++++++.+.|+++
T Consensus 585 -~-~~~~~~~~-~~~~~~sG~p~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 585 -P-GILVPSLG-VDTFGRSGPPPELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred -C-Cccceeec-cccCCcCCCCHHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 1 12345666 689999999999999999999999999999999999885
No 10
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=7.4e-77 Score=656.56 Aligned_cols=476 Identities=19% Similarity=0.248 Sum_probs=393.3
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||.++ ++|||+...++....++|++|++++.|+|+|+|.|+.+. +++|||++|||+++||.+|||
T Consensus 87 L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA 166 (663)
T PRK12753 87 LKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEV 166 (663)
T ss_pred HHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHH
Confidence 468999997 899998877888899999999999999999999998752 688999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| |++|++||+ +++++...+ + + .+++.++
T Consensus 167 ~~~A~~~kL~nLi~ivd~N~-~~i~~~~~~-----~--~------------------------------~~~~~~~---- 204 (663)
T PRK12753 167 CSLAGTLGLGKLIGFYDHNG-ISIDGETEG-----W--F------------------------------TDDTAKR---- 204 (663)
T ss_pred HHHHHHHCCCCEEEEEECCC-CcCCCChhh-----h--c------------------------------ChhHHHH----
Confidence 9999999975 888999998 677443211 0 0 0234433
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
+++|||+++.++||||++++.+++++++.. .++|++|+++|.||+|++..+ +...||+.+
T Consensus 205 ------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e-~~~~~H~~~l~~~~~ 270 (663)
T PRK12753 205 ------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKA-GKEESHGAPLGEEEV 270 (663)
T ss_pred ------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCccc-CCCCccCCCCCHHHH
Confidence 999999998668999999999999998852 478999999999999998765 446789843
Q ss_pred ------------CCCCC-----------CCcc------------------------------CCC---------------
Q 008493 223 ------------KFDPA-----------TGKQ------------------------------FKS--------------- 234 (563)
Q Consensus 223 ------------~f~~~-----------~~~~------------------------------~~~--------------- 234 (563)
+|+.. ++++ +++
T Consensus 271 ~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 350 (663)
T PRK12753 271 ALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQA 350 (663)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhc
Confidence 34431 1110 110
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHHhCCCCeeecccchHHHHHHHHHHhh-CCCeeE
Q 008493 235 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPF 308 (563)
Q Consensus 235 ~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~-~G~~~~ 308 (563)
..+.+..|++++++|.++++.+|+++++++|+++|+.+ ..|.++||+||+|+||+|++|+++|+|+|+ .|++||
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 11234567889999999999999999999999988866 678899999999999999999999999999 689999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
++||++|+.|++|||+. .|++++||++++++.|+ .|++|+|||+++|++++|.+||++|++|+|++|+..+++.|++.
T Consensus 431 ~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al~~ 509 (663)
T PRK12753 431 TATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIER 509 (663)
T ss_pred EEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHHhc
Confidence 99999999999999975 59999999999999988 79999999999999999999999999999999999999999976
Q ss_pred CCCCEEEEecCCCCCCccCCCCCC-CCccccCceEEEeeCC---cEEEEEechhHHHHHHHHHHHHhCCCceEEeecccc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADARFC 463 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~-~~~~~~~k~~~l~~g~---dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l 463 (563)
.++|+|||++|+..+.. ..... ...+..|+ ++++++. |++||++|++++.|++|+++|+++|++++||+++|+
T Consensus 510 ~~gP~~irl~R~~~~~~--~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~ 586 (663)
T PRK12753 510 HNGPTALILSRQNLAQQ--ERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPST 586 (663)
T ss_pred CCCCEEEEecCCCCCCC--CCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcC
Confidence 68999999999875432 11110 12244444 8888864 999999999999999999999999999999999999
Q ss_pred ccCcHHHH--HH-Hhcc-CCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHH
Q 008493 464 KPLDHALI--RS-LAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPS 539 (563)
Q Consensus 464 ~Pf~~~~i--~~-~~~~-~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~ 539 (563)
+|||.+.+ ++ ++.. ....|++|++...+| .... +.+.+++|+ ++|+.+|+.+++++++|||++
T Consensus 587 kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~----~~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~Glt~~ 653 (663)
T PRK12753 587 DIFDAQDEAYRESVLPSNVTARVAVEAGIADYW----YKYV--------GLKGAIIGM-TGFGESAPADKLFPFFGFTVE 653 (663)
T ss_pred CccchhHHHHHHhhcccccceEEEEccChHHHH----HHHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhCCCHH
Confidence 99999876 22 2322 223489999842222 2211 245678998 799999999999999999999
Q ss_pred HHHHHHHHHh
Q 008493 540 HIAATVFNIL 549 (563)
Q Consensus 540 ~I~~~i~~~~ 549 (563)
.|++++++++
T Consensus 654 ~Iv~~i~~~~ 663 (663)
T PRK12753 654 NIVAKAKKLL 663 (663)
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 11
>PLN02790 transketolase
Probab=100.00 E-value=4.6e-76 Score=651.12 Aligned_cols=475 Identities=22% Similarity=0.318 Sum_probs=397.4
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhc-----CC-----CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-----GR-----KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~-----~~-----~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||.|+ ++|||++.++|++.+++|++|++++.|+|+|+|.|++ ++ +++|||++|||++++|++|||
T Consensus 78 l~~~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EA 157 (654)
T PLN02790 78 LKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEA 157 (654)
T ss_pred HHHhccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHH
Confidence 468999998 6699999889999999999999999999999999953 32 688999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++++.+.+.. .+++.++
T Consensus 158 l~~A~~~~L~nli~i~d~N~-~~i~~~~~~~~-------------------------------------~~~~~~~---- 195 (654)
T PLN02790 158 ASLAGHWGLGKLIVLYDDNH-ISIDGDTEIAF-------------------------------------TEDVDKR---- 195 (654)
T ss_pred HHHHHHhCCCCEEEEEecCC-ccccCCccccc-------------------------------------chhHHHH----
Confidence 9999999975 888999998 67754432100 1233333
Q ss_pred HhccccCCCcchhhhcCceEeeccCC-CCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG-~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~----- 222 (563)
+++|||+++.+.+| ||++++.+|++++++. .++|++|+++|.||+|++.. ++...||+.+
T Consensus 196 ------------f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~-e~~~~~H~~~~~~~~ 261 (654)
T PLN02790 196 ------------YEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNK-ANSYSVHGAALGEKE 261 (654)
T ss_pred ------------HHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccc-cCCCCcCCCCCCHHH
Confidence 99999999965555 7999999999999852 47899999999999999874 4567899876
Q ss_pred -------------CCCCCCCc---------------------------cCC---C-----------------------Cc
Q 008493 223 -------------KFDPATGK---------------------------QFK---S-----------------------SA 236 (563)
Q Consensus 223 -------------~f~~~~~~---------------------------~~~---~-----------------------~~ 236 (563)
+|+..++. +.+ + ..
T Consensus 262 ~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (654)
T PLN02790 262 VDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPED 341 (654)
T ss_pred HHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccC
Confidence 45543110 000 0 01
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC-----hHHHHHh-CCCCeeecccchHHHHHHHHHHhhC--CCeeE
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRR-FPTRCFDVGIAEQHAVTFAAGLACE--GLKPF 308 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~-----~~~~~~~-~p~r~i~~gi~E~~~~~~a~G~a~~--G~~~~ 308 (563)
+...+|+++.+.|..+.+.+|+++..++|+.+|+. +..|+++ ||+||||+||+|++|+++|+|+|++ |++||
T Consensus 342 ~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~ 421 (654)
T PLN02790 342 PADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPY 421 (654)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEE
Confidence 12356788889999999999999999999988865 5789888 5999999999999999999999996 59999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
++||++|+.++.+|++ +.|++++||+++++|.|+ .|++|+|||+.+|++++|.+||++|++|+|++|+..++++++..
T Consensus 422 ~~tf~~F~~~~~~~ir-~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~ 500 (654)
T PLN02790 422 CATFFVFTDYMRAAMR-LSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTN 500 (654)
T ss_pred EEecHHHHHHHHHHHH-HHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHc
Confidence 9999999999999995 569999999999988777 69999999999999999999999999999999999999999876
Q ss_pred CCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeC-----CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG-----ERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 462 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g-----~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~ 462 (563)
.++|+|||++|+..+.. +.. ....+..|+ ++++++ .|++||++|+++..|++|++.|+++|++++||+++|
T Consensus 501 ~~gP~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ 576 (654)
T PLN02790 501 RKRPTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVC 576 (654)
T ss_pred CCCCEEEEecCCCCCCC--CCC-cccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 68999999999874332 111 123466776 777774 799999999999999999999999999999999999
Q ss_pred cccCcHHHHH---HHh-ccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCH
Q 008493 463 CKPLDHALIR---SLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTP 538 (563)
Q Consensus 463 l~Pf~~~~i~---~~~-~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~ 538 (563)
++|||.+... +.+ ++.+.+|++|++..+||++ .+ ..+..++|+ ++|+.+|+.+++++++|||+
T Consensus 577 ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~----~~--------~~~~~~igv-d~Fg~sg~~~~l~~~~Glt~ 643 (654)
T PLN02790 577 WELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEK----YV--------GSKGKVIGV-DRFGASAPAGILYKEFGFTV 643 (654)
T ss_pred cchhhhhHHHHHHhhhccccceEEEecCccchhHHH----hc--------CCCceEEEe-CCCcCcCCHHHHHHHhCCCH
Confidence 9999998644 666 6678899999998888763 11 123467898 89999999999999999999
Q ss_pred HHHHHHHHHHh
Q 008493 539 SHIAATVFNIL 549 (563)
Q Consensus 539 ~~I~~~i~~~~ 549 (563)
+.|+++|++++
T Consensus 644 e~I~~~i~~~~ 654 (654)
T PLN02790 644 ENVVAAAKSLL 654 (654)
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 12
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1e-75 Score=649.01 Aligned_cols=472 Identities=22% Similarity=0.311 Sum_probs=394.1
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
+.+|||.++ ++|||++.+++++.+++|++|++++.|+|+|+|.|+++. +++|||++|||++++|++|||
T Consensus 89 l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EA 168 (661)
T PTZ00089 89 LKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEA 168 (661)
T ss_pred HHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHH
Confidence 357899987 789999888999999999999999999999999998753 788999999999999999999
Q ss_pred HHhhcccCC-CEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~-pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++ ||++||+||+ +++++...... .+++.+
T Consensus 169 l~~A~~~~L~nLi~i~d~N~-~~i~~~~~~~~-------------------------------------~~~~~~----- 205 (661)
T PTZ00089 169 LSLAGHLGLEKLIVLYDDNK-ITIDGNTDLSF-------------------------------------TEDVEK----- 205 (661)
T ss_pred HHHHHHhCCCCEEEEEECCC-cccccCccccc-------------------------------------CccHHH-----
Confidence 999999996 5889999999 67754432100 022333
Q ss_pred HhccccCCCcchhhhcCceEeeccCCC-CHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~-d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~----- 222 (563)
+++++||+++.+.||| |++++.++++++++. .++|++|+++|.||+|+ ..++...||+.+
T Consensus 206 -----------~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~--~~e~~~~~H~~~~~~~~ 271 (661)
T PTZ00089 206 -----------KYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS--SKAGTEKVHGAPLGDED 271 (661)
T ss_pred -----------HHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC--CcCCCCCccCCCCCHHH
Confidence 3999999999767999 999999999999862 36899999999999994 345667899875
Q ss_pred --------------CCCCC-------C-----Ccc------------------------------CC-----------CC
Q 008493 223 --------------KFDPA-------T-----GKQ------------------------------FK-----------SS 235 (563)
Q Consensus 223 --------------~f~~~-------~-----~~~------------------------------~~-----------~~ 235 (563)
+|+.. . ++. ++ ..
T Consensus 272 ~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (661)
T PTZ00089 272 IAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTN 351 (661)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhhhccc
Confidence 25442 0 000 00 01
Q ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHHhCC-CCeeecccchHHHHHHHHHHhh-CCCeeE
Q 008493 236 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFP-TRCFDVGIAEQHAVTFAAGLAC-EGLKPF 308 (563)
Q Consensus 236 ~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~-~G~~~~ 308 (563)
.+..++|++++++|.++.+.+|+++..++|+..|+.+ ..|+++|| +||+|+||+||+|+++|+|+|+ .|++||
T Consensus 352 ~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~ 431 (661)
T PTZ00089 352 DKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPF 431 (661)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEE
Confidence 1233578899999999999999999999999888864 37889999 8999999999999999999999 789999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
++||++|++|++||| ++.|++++||++++++.|+ .|++|+|||+.+|++++|.+||++|++|+|+.|+..++++|+..
T Consensus 432 ~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~al~~ 510 (661)
T PTZ00089 432 GATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYALALAN 510 (661)
T ss_pred EEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHHHHHc
Confidence 999999999999998 5669999999999988887 79999999999999999999999999999999999999999976
Q ss_pred CCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeC---CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG---ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 464 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g---~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~ 464 (563)
.++|+|||++|+..+.. +. ....+..+++++++++ .|++||++|+++..|++|++.|++ |++++||+++|++
T Consensus 511 ~~gP~~irl~R~~~~~~--~~--~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ik 585 (661)
T PTZ00089 511 AKTPTILCLSRQNTPPL--PG--SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWE 585 (661)
T ss_pred CCCCEEEEecCCCCCCc--CC--CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCcc
Confidence 78999999999875332 21 1223345566899975 799999999999999999999999 9999999999999
Q ss_pred cCcHHHHHHH---hc-cCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHH
Q 008493 465 PLDHALIRSL---AK-SHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 540 (563)
Q Consensus 465 Pf~~~~i~~~---~~-~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~ 540 (563)
|||.+.+... +. +...+|++|++...||.. + ...++|+++ |+.+|+.+++++++|||++.
T Consensus 586 p~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~Gl~~e~ 649 (661)
T PTZ00089 586 LFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFGFTVEN 649 (661)
T ss_pred HHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhCCCHHH
Confidence 9999876532 44 456799999987555431 0 114799987 99999999999999999999
Q ss_pred HHHHHHHHhcc
Q 008493 541 IAATVFNILGQ 551 (563)
Q Consensus 541 I~~~i~~~~~~ 551 (563)
|+++|++++.+
T Consensus 650 I~~~i~~~l~~ 660 (661)
T PTZ00089 650 VVEKARALAAR 660 (661)
T ss_pred HHHHHHHHhhh
Confidence 99999988753
No 13
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2.4e-75 Score=645.31 Aligned_cols=475 Identities=22% Similarity=0.316 Sum_probs=395.6
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||.++ ++|||+...++...+++|++|++++.|+|+|+|.|+.+ .+++|||++|||+++||.+|||
T Consensus 83 L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA 162 (653)
T TIGR00232 83 LKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEV 162 (653)
T ss_pred HHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHH
Confidence 358999996 99999987788999999999999999999999999863 3788999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| |++||+||+ +++++.+.+.. .+++.++
T Consensus 163 ~~~A~~~~L~nLi~ivd~N~-~~i~~~~~~~~-------------------------------------~~~~~~~---- 200 (653)
T TIGR00232 163 ASLAGHLKLGKLIVLYDSNR-ISIDGAVDGSF-------------------------------------TEDVAKR---- 200 (653)
T ss_pred HHHHHHhCCCcEEEEEeCCC-eeecccccccc-------------------------------------CccHHHH----
Confidence 9999999976 888888888 77755432210 0233333
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK----- 223 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~----- 223 (563)
+++|||+++.+.||||++++.+|++++++. .++|++|+++|.||+|++..|+ ...||+.+.
T Consensus 201 ------------~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~-~~~~H~~~~~~~~~ 266 (653)
T TIGR00232 201 ------------FEAYGWEVLEVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAG-THGVHGAPLGDEDV 266 (653)
T ss_pred ------------HHhcCCcEEEeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCC-CCcccCCCCCHHHH
Confidence 899999998544999999999999998862 2489999999999999987664 467888741
Q ss_pred -------------CCCCC-------------Cc------------------------------cCCC-----------Cc
Q 008493 224 -------------FDPAT-------------GK------------------------------QFKS-----------SA 236 (563)
Q Consensus 224 -------------f~~~~-------------~~------------------------------~~~~-----------~~ 236 (563)
|+..+ ++ +++. ..
T Consensus 267 ~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 346 (653)
T TIGR00232 267 KLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKL 346 (653)
T ss_pred HHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhccC
Confidence 22110 10 0000 01
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHH-----HHHhCCCCeeecccchHHHHHHHHHHhh-CCCeeEEe
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNL-----FLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCA 310 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~-----~~~~~p~r~i~~gi~E~~~~~~a~G~a~-~G~~~~~~ 310 (563)
+...+|++++++|.++++.+|+++++++|+++|+.+.. |.++||+||+|+||+|++|+++|+|+|+ .|++||++
T Consensus 347 ~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~ 426 (653)
T TIGR00232 347 QALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYGG 426 (653)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEEE
Confidence 13357889999999999999999999999998887644 8899999999999999999999999999 57999999
Q ss_pred echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCC
Q 008493 311 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 389 (563)
Q Consensus 311 ~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~ 389 (563)
||++|++|+++|++ +.|++++||+++++|.|+ .|.+|+|||+.+|++++|.+||++|++|+|+.|+..++++++...+
T Consensus 427 tf~~F~~r~~~~ir-~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~ 505 (653)
T TIGR00232 427 TFLMFVDYARPAIR-LAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQD 505 (653)
T ss_pred EhHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCC
Confidence 99999999999995 559999999999998887 6899999999999999999999999999999999999999996678
Q ss_pred CCEEEEecCCCCCCccCCCCCCCCccccCceEEE--eeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCc
Q 008493 390 RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD 467 (563)
Q Consensus 390 ~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l--~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~ 467 (563)
+|+|||++|+..+.. .+. ....+..|+ +++ ++|+|++||++|+++..|++|++.|+++||+++||+++|++|||
T Consensus 506 gP~~irl~r~~~~~~--~~~-~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld 581 (653)
T TIGR00232 506 GPTALILSRQNLPQL--EES-SLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFD 581 (653)
T ss_pred CcEEEEEcCCccCCC--Ccc-cccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccc
Confidence 999999999874322 111 113455665 777 66899999999999999999999999999999999999999997
Q ss_pred HH---HHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHH
Q 008493 468 HA---LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAAT 544 (563)
Q Consensus 468 ~~---~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~ 544 (563)
++ ++.+++++++.+|++|++..+||. ..+ +....++|+ ++|+.+|+.+++++++|||++.|+++
T Consensus 582 ~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I~~~ 648 (653)
T TIGR00232 582 KQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENVVAK 648 (653)
T ss_pred cCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHHHHH
Confidence 65 488888888899999999875553 111 111257888 89999999999999999999999999
Q ss_pred HHHHh
Q 008493 545 VFNIL 549 (563)
Q Consensus 545 i~~~~ 549 (563)
|++++
T Consensus 649 i~~~~ 653 (653)
T TIGR00232 649 AKKLL 653 (653)
T ss_pred HHHhC
Confidence 98764
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=3.6e-75 Score=638.36 Aligned_cols=477 Identities=20% Similarity=0.272 Sum_probs=394.4
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
+.+|||.|+ ++|||+...++.+..++|++|++++.|+|+|+|.|+.+ .+++|||++|||+++||.+|||
T Consensus 87 L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA 166 (663)
T PRK12754 87 LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEV 166 (663)
T ss_pred HHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHH
Confidence 357999996 89999987788999999999999999999999999875 3788999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| |++||+||+ +++++.+.+.. .+++.++
T Consensus 167 ~~~A~~~kL~nLi~ivD~N~-~~idg~~~~~~-------------------------------------~~~~~~r---- 204 (663)
T PRK12754 167 CSLAGTLKLGKLIAFYDDNG-ISIDGHVEGWF-------------------------------------TDDTAMR---- 204 (663)
T ss_pred HHHHHHhCCCCEEEEEEcCC-CccCcchhhcc-------------------------------------CccHHHH----
Confidence 9999999976 789999998 67744332100 0244444
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK----- 223 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~----- 223 (563)
+++|||+++.++||||++++.+|+++++.. .++|++|+++|.+|+|.+..|+ ...||+.+.
T Consensus 205 ------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~-~~~~Hg~~l~~~~~ 270 (663)
T PRK12754 205 ------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG-THDSHGAPLGDAEI 270 (663)
T ss_pred ------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCC-CccccCCCCCHHHH
Confidence 999999999657999999999999998752 5789999999999999887554 467898752
Q ss_pred -------------CCCCC-----------Ccc------------------------------CCC---------------
Q 008493 224 -------------FDPAT-----------GKQ------------------------------FKS--------------- 234 (563)
Q Consensus 224 -------------f~~~~-----------~~~------------------------------~~~--------------- 234 (563)
|...+ +++ ++.
T Consensus 271 ~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 350 (663)
T PRK12754 271 ALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQA 350 (663)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcc
Confidence 21110 100 000
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC-----hHHHHHhCCCCeeecccchHHHHHHHHHHhh-CCCeeE
Q 008493 235 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPF 308 (563)
Q Consensus 235 ~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~-----~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~-~G~~~~ 308 (563)
..+...+|+++.++|.++++.+|+++++++|+++|+. ...|+++||+|||++||+|++|+++|+|+|+ .|++||
T Consensus 351 ~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf 430 (663)
T PRK12754 351 NPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPY 430 (663)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCeEE
Confidence 0013356889999999999999999999999988875 4678889999999999999999999999999 579999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
+.||++|+.|+++||++ +|++++||+++++|.|+ .|++|+|||+.+|++++|.+||++|++|+|+.|+..+++.+++.
T Consensus 431 ~~tf~~F~~r~~~qir~-~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~ 509 (663)
T PRK12754 431 TSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER 509 (663)
T ss_pred EEeeHHHHHHHHHHHHH-HHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhC
Confidence 99999999999999975 59999999999999998 79999999999999999999999999999999999999999986
Q ss_pred CCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeCC---cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 464 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g~---dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~ 464 (563)
.++|+|||++|+..+...-.+ .....+..|+ ++++++. |++||++|+++++|++|++.|+++||+++||+++|++
T Consensus 510 ~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~k 587 (663)
T PRK12754 510 QDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTD 587 (663)
T ss_pred CCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccC
Confidence 689999999998754321100 0012344454 8888864 9999999999999999999999999999999999999
Q ss_pred cCcHH---HHHHHhccC-CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHH
Q 008493 465 PLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 540 (563)
Q Consensus 465 Pf~~~---~i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~ 540 (563)
|||++ +...++.+. ...|++|.....||.. ++..++. .+|+ ++|+.||+.+++++++|+|++.
T Consensus 588 p~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~----~~~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~t~e~ 654 (663)
T PRK12754 588 AFDKQDAAYRESVLPKAVSARVAVEAGIADYWYK----YVGLNGA--------IVGM-TTFGESAPAELLFEEFGFTVDN 654 (663)
T ss_pred cCCCCCHHHHHhcCccccccceEeecccccchhh----hccCCCC--------EEEe-CCCCCCCCHHHHHHHhCCCHHH
Confidence 99986 444555433 2458999977777873 3343321 3787 8899999999999999999999
Q ss_pred HHHHHHHHh
Q 008493 541 IAATVFNIL 549 (563)
Q Consensus 541 I~~~i~~~~ 549 (563)
|++++++++
T Consensus 655 I~~~~~~~~ 663 (663)
T PRK12754 655 VVAKAKALL 663 (663)
T ss_pred HHHHHHHhC
Confidence 999998764
No 15
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=4.6e-75 Score=645.08 Aligned_cols=474 Identities=25% Similarity=0.343 Sum_probs=395.8
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+||++++ ++|||++.+++++.+++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++|||
T Consensus 91 l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Ea 170 (624)
T PRK05899 91 LKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEA 170 (624)
T ss_pred HHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHH
Confidence 357999998 799999877899999999999999999999999998776 789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+.... .. ..++
T Consensus 171 l~~A~~~~L~~li~v~dnN~-~~~~~~~~~-----~~--------------------------------~~~~------- 205 (624)
T PRK05899 171 CSLAGHLKLGNLIVIYDDNR-ISIDGPTEG-----WF--------------------------------TEDV------- 205 (624)
T ss_pred HHHHHHhCCCCEEEEEECCC-Ccccccccc-----cc--------------------------------cccH-------
Confidence 9999999976 777777777 565322110 00 0122
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCC--
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-- 226 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~-- 226 (563)
..++++|||+++ .+||||++++.++++++++ .++|++|+++|.||+|++.+| +...||+.++.+.
T Consensus 206 ---------~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e-~~~~~H~~~~~~~~~ 272 (624)
T PRK05899 206 ---------KKRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKE-GTHKVHGAPLGAEEI 272 (624)
T ss_pred ---------HHHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCcccc-CCCcccCCCCCHHHH
Confidence 344999999988 4899999999999999986 578999999999999999877 4567998653210
Q ss_pred CC--------Ccc--CC-----------C--C-----------cccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh
Q 008493 227 AT--------GKQ--FK-----------S--S-----------ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL 272 (563)
Q Consensus 227 ~~--------~~~--~~-----------~--~-----------~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~ 272 (563)
++ .++ ++ + . .++.+++++++++|.+++++||+++++++|+++++.+
T Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~ 352 (624)
T PRK05899 273 AAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSADLAGSNNT 352 (624)
T ss_pred HHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc
Confidence 00 000 00 0 0 0223458999999999999999999999999888776
Q ss_pred HHHH------HhCCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-C
Q 008493 273 NLFL------RRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-V 344 (563)
Q Consensus 273 ~~~~------~~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~ 344 (563)
..+. ++||+||+|+||+|++|+++|+|+|+.| ++||+++|++|+.|+++|+++ .+++++||+++++++|+ .
T Consensus 353 ~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~-~~~~~~pv~~v~~~~G~~~ 431 (624)
T PRK05899 353 KIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRL-AALMKLPVIYVFTHDSIGV 431 (624)
T ss_pred ccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHH-HHhcCCCEEEEEECCCcCc
Confidence 5555 6889999999999999999999999999 999999999999999999976 58999999999999998 6
Q ss_pred CCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEe
Q 008493 345 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILI 424 (563)
Q Consensus 345 g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~ 424 (563)
|.+|+|||+.+|+++++++||++|++|+|++|++.+++++++..++|+|||++|...+. +.+....+.++.|+ ++++
T Consensus 432 g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~~~G~-~~l~ 508 (624)
T PRK05899 432 GEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGVAKGG-YVLR 508 (624)
T ss_pred CCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCccccccccCCc-EEEe
Confidence 78999999999999999999999999999999999999999755899999999876432 11110124577776 8899
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHH---HHHHHh-ccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 425 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLA-KSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~---~i~~~~-~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
+|.|+|||++|+++++|++|++.|+++||+++|||++|++|||++ .+...+ .....+|++|++..+||. .++
T Consensus 509 ~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~----~~~ 584 (624)
T PRK05899 509 DDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWY----KYV 584 (624)
T ss_pred cCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchh----hhc
Confidence 999999999999999999999999999999999999999999998 355555 445678888887767772 222
Q ss_pred HHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 501 AQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
+.+++++|+++ |+.+|+.+++++++|||++.|+++|++++
T Consensus 585 --------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 585 --------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred --------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 23678999999 99999999999999999999999998753
No 16
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=8.4e-71 Score=608.07 Aligned_cols=533 Identities=20% Similarity=0.205 Sum_probs=402.2
Q ss_pred CCCCccC--C-CCCCCCCCCCCC-CcccCCCCCchhhHHHHHHHHhhhhcC-------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQT--D-GLSGFTKRSESE-YDCFGTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~--~-g~~g~~~~~~~~-~~~~~~g~~G~~l~~a~G~A~A~~~~~-------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||. + |+++||++...+ .+.+++|+||+++++|+|+|++.|+.. .+++|||++|||+++||.+|||
T Consensus 159 L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA 238 (889)
T TIGR03186 159 LAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGA 238 (889)
T ss_pred HHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHH
Confidence 3589997 4 799999886555 589999999999999999999988543 2689999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHH----HHhhhhhcc----------
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE----VAKGVTKQI---------- 134 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------- 134 (563)
+.+|++++ .||++||++|+ +++ ||++..++.+...++.....-+|+.++- .+...+..+
T Consensus 239 ~~~Aa~~kLdNLi~IvD~N~-~ql-----DG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~ 312 (889)
T TIGR03186 239 LSLAARERLDNLVFVINCNL-QRL-----DGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFA 312 (889)
T ss_pred HHHHHHhCCCCEEEEEeCCC-Ccc-----CCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHH
Confidence 99999999 79999999999 565 5655544432122222211122222210 000000000
Q ss_pred CCchHHHHH---HHHHHHh-cccc--CCCcchhhhcC---ceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 135 GGPMHELAA---KVDEYAR-GMIS--GSGSTLFEELG---LYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 135 ~~~~~~~~~---~~~~~~~-~~~~--~~~~~~~~~~G---~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+....+++. +-..+.| +++. |....+++.+- ++.. .-+|||+++|.+|+++|++. .++||+|.++|+||
T Consensus 313 ~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l-~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~TvkG 390 (889)
T TIGR03186 313 HTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL-RRGGHDARKLYAAYDRAVRH-EGRPTVILAKTMKG 390 (889)
T ss_pred hcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhh-cCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeec
Confidence 000011111 0011122 1211 11112222211 1111 11799999999999998862 46899999999999
Q ss_pred CCcchhhhccccccCCCC--------------------------C-CCCC---------------C----------c---
Q 008493 206 RGYPYAEKAADKYHGVAK--------------------------F-DPAT---------------G----------K--- 230 (563)
Q Consensus 206 ~g~~~~~~~~~~~h~~~~--------------------------f-~~~~---------------~----------~--- 230 (563)
+|.+.+.+..+.+|+.++ | .+.. + .
T Consensus 391 ~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~ 470 (889)
T TIGR03186 391 FGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHAL 470 (889)
T ss_pred CCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCcccc
Confidence 998765544567777432 1 1100 0 0
Q ss_pred cCCC-----------CcccccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcChH-----------------------
Q 008493 231 QFKS-----------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGGGTGLN----------------------- 273 (563)
Q Consensus 231 ~~~~-----------~~~~~~~~~a~~~~l~~~~~~---~~~v~~~~~D~~~s~~~~----------------------- 273 (563)
.+++ ..++.+.+.||.++|..+++. .++||.+.+|+..++++.
T Consensus 471 ~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~ 550 (889)
T TIGR03186 471 AVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGS 550 (889)
T ss_pred CCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHH
Confidence 0111 114457788999997777764 689999999999999543
Q ss_pred --HHHHhCCCCeeecccchHHHHH--HHHHHhhC----CCeeEEeechhhH-HHHHHHHHHHhccCCCCeEEEEeCCCC-
Q 008493 274 --LFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSFM-QRAYDQVVHDVDLQKLPVRFAMDRAGL- 343 (563)
Q Consensus 274 --~~~~~~p~r~i~~gi~E~~~~~--~a~G~a~~----G~~~~~~~~~~f~-~~a~dqi~~~a~~~~~pv~~v~~~~G~- 343 (563)
.+++.+|+||+|+||+|++|++ +|+|+|++ |++||+.+|++|. +|++||+++. ++++.++++++.++|+
T Consensus 551 ~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG~t 629 (889)
T TIGR03186 551 MLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSGKT 629 (889)
T ss_pred HHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCCcc
Confidence 3567889999999999999999 99999988 7899999999996 8999999655 9999999999999998
Q ss_pred -CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----c-CCCCEEEEecCCCCCCccCCCCCCC-Cccc
Q 008493 344 -VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----I-DDRPSCFRYPRGNGIGVELPPGNKG-IPLE 416 (563)
Q Consensus 344 -~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~-~~~P~~i~~~~~~~~~~~~p~~~~~-~~~~ 416 (563)
.+.+|+|||+.+|+++++.+||++|++|+|+.|+..+++.+++ . .+.|+|||+.+.++....+++. . ..+.
T Consensus 630 Tlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~--~~~~~~ 707 (889)
T TIGR03186 630 TLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPED--RLDAVR 707 (889)
T ss_pred CCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCC--cccchh
Confidence 4789999999999999999999999999999999999998765 2 3689999999986532223321 1 2234
Q ss_pred cC--ce-EEEe----eCCcEEEEEechhHHHHHHHHHHHHhC-CCceEEeeccccccCcHHHHHHHhccCCEEEEEeCC-
Q 008493 417 VG--KG-RILI----EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG- 487 (563)
Q Consensus 417 ~~--k~-~~l~----~g~dv~iv~~G~~~~~~~~Aa~~L~~~-Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~- 487 (563)
.+ |+ ++++ +|.|++|+++|.++++|++|++.|+++ ||+++|++++|++||+++.+. +++++.|+++|++
T Consensus 708 ~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~ 785 (889)
T TIGR03186 708 RGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPP 785 (889)
T ss_pred cchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccc
Confidence 44 46 8888 477999999999999999999999987 999999999999999999987 6778999999997
Q ss_pred --C-CCChHH-------------HHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 488 --S-IGGFGS-------------HVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 488 --~-~gg~g~-------------~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
+ .||+++ .+++++.+.. +.++.++|+ |.|+++|+.++|+++||+|++.|+.++++++..
T Consensus 786 ~~~v~ggLg~~~~p~va~~D~~~avae~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~ 860 (889)
T TIGR03186 786 SPHVAQALGATQGPVIAATDYVRAVPELIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQALAD 860 (889)
T ss_pred cccHhhhhCCCCCCeeeecchHHHHHHHHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5 699999 9999998752 679999998 999999999999999999999999999998855
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.4e-70 Score=599.86 Aligned_cols=489 Identities=20% Similarity=0.203 Sum_probs=403.0
Q ss_pred CCCCccC--C-CCCCCCCCCCCC-CcccCCCCCchhhHHHHHHHHhhhh-------cCCCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQT--D-GLSGFTKRSESE-YDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~--~-g~~g~~~~~~~~-~~~~~~g~~G~~l~~a~G~A~A~~~-------~~~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||. | |+++||++...| .+.|.+|+||.+++.|+|+|++.|+ ...+++||||+|||+++||.+|||
T Consensus 165 L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA 244 (891)
T PRK09405 165 LDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGA 244 (891)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHH
Confidence 4689996 5 799999986655 6889999999999999999999984 345789999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+.+|++++ .||+|||++|+ +++ ||+++..+.+.. ++.++
T Consensus 245 ~~~A~~~~LdNLi~ivD~N~-q~l-----DG~v~~~~~~~~------------------------------~l~~~---- 284 (891)
T PRK09405 245 ISLAAREKLDNLIFVINCNL-QRL-----DGPVRGNGKIIQ------------------------------ELEGI---- 284 (891)
T ss_pred HHHHHHhCCCCEEEEEECCC-ccc-----CCccccccccch------------------------------hHHHH----
Confidence 99999999 79999999999 565 666665444322 22222
Q ss_pred HhccccCCCcchhhhcCceEeec---------------------------------------------------------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGP--------------------------------------------------------- 171 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~--------------------------------------------------------- 171 (563)
|+++||+++.+
T Consensus 285 ------------f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~ 352 (891)
T PRK09405 285 ------------FRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVA 352 (891)
T ss_pred ------------HhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHh
Confidence 55566655533
Q ss_pred -----------cCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----------------
Q 008493 172 -----------VDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK----------------- 223 (563)
Q Consensus 172 -----------~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~----------------- 223 (563)
.+|||+++|.+|+++|++. .++|++|.++|+||+|.++..+..+.+|+.++
T Consensus 353 ~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~ 431 (891)
T PRK09405 353 DMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPI 431 (891)
T ss_pred hCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCC
Confidence 2499999999999988862 47899999999999999444445567787421
Q ss_pred ---------CC-CCCC-------------------------cc--CCC-----------CcccccHHHHHHHHHHHHHhc
Q 008493 224 ---------FD-PATG-------------------------KQ--FKS-----------SARTQSYTTYFAEALIAEAEV 255 (563)
Q Consensus 224 ---------f~-~~~~-------------------------~~--~~~-----------~~~~~~~~~a~~~~l~~~~~~ 255 (563)
|. ++.+ .+ +|+ ..++++.+.||+++|.++++.
T Consensus 432 ~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~ 511 (891)
T PRK09405 432 SDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKD 511 (891)
T ss_pred ChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhc
Confidence 10 0000 00 110 024567799999999999996
Q ss_pred ---CCCEEEEecCCCCCcCh-------------------------HHHHHhCCCCeeecccchHHHHH--HHHHHhhC--
Q 008493 256 ---DKDVVAIHAAMGGGTGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE-- 303 (563)
Q Consensus 256 ---~~~v~~~~~D~~~s~~~-------------------------~~~~~~~p~r~i~~gi~E~~~~~--~a~G~a~~-- 303 (563)
.++||.+.+|++.++++ ..|+++||+||+|+||+|++|++ +|+|+|++
T Consensus 512 ~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~ 591 (891)
T PRK09405 512 KEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTH 591 (891)
T ss_pred cccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhc
Confidence 89999999999998877 45788999999999999999999 99999988
Q ss_pred --CCeeEEeechhh-HHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHH
Q 008493 304 --GLKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFH 379 (563)
Q Consensus 304 --G~~~~~~~~~~f-~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~ 379 (563)
|++||+.+|++| .+|++||+++.++++..+|+++++++|. .+..|.|||+.++..+++.+||++|++|+|+.|+..
T Consensus 592 G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~ 671 (891)
T PRK09405 592 GEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAV 671 (891)
T ss_pred CCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHH
Confidence 789999999999 5899999999999999999999999988 588999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCC--CEEEEecCCCCCCccCCCCCCCCccccCce-EEEeeCC------cEEEEEechhHHHHHHHHHH
Q 008493 380 MVATAAA---IDDR--PSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIEGE------RVALLGYGTAVQSCLAASAL 447 (563)
Q Consensus 380 ~l~~a~~---~~~~--P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~-~~l~~g~------dv~iv~~G~~~~~~~~Aa~~ 447 (563)
+++.+++ .... |.|+++...++.. |..++.+.+.++|+ +++++|. |++|+++|.++++|++|++.
T Consensus 672 iv~~~l~rm~~~~~~~~yYlrl~ne~~~~---~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~ 748 (891)
T PRK09405 672 IVQDGLRRMYGEQENVFYYITVMNENYHQ---PAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEI 748 (891)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeCCCCCCC---CCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHH
Confidence 9999876 1233 6667775222221 22223567889997 9999976 89999999999999999999
Q ss_pred HHh-CCCceEEeeccccccCcHHHHHHHh---------ccCCEEEEEeCCCCCChH-------HHHHHHHHHcCCCCCCC
Q 008493 448 LES-NGLRLTVADARFCKPLDHALIRSLA---------KSHEVLITVEEGSIGGFG-------SHVVQFLAQDGLLDGTV 510 (563)
Q Consensus 448 L~~-~Gi~v~vi~~~~l~Pf~~~~i~~~~---------~~~~~vvvvE~~~~gg~g-------~~v~~~l~~~~~~~~~~ 510 (563)
|++ .||+++|++++|++|||.+.+.... ++++.|+++|++ .+|++ +.|++.+.+.. +.
T Consensus 749 L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~----p~ 823 (891)
T PRK09405 749 LAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAFV----PG 823 (891)
T ss_pred HhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHhC----CC
Confidence 998 7999999999999999999987655 556778888877 57777 88999887752 57
Q ss_pred ceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 511 KWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 511 ~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
++.++|+ |.|++||++++|+++||||++.|++++++++..
T Consensus 824 ~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~ 863 (891)
T PRK09405 824 DYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALAD 863 (891)
T ss_pred CEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8999998 999999999999999999999999999999855
No 18
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-68 Score=556.33 Aligned_cols=476 Identities=22% Similarity=0.338 Sum_probs=398.3
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
+.+|||++. .+|||+...++.+...+|.+|+|++.|+|+|+|.+.+.. |..+||++|||++|||.++||
T Consensus 89 Lk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA 168 (663)
T COG0021 89 LKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEA 168 (663)
T ss_pred HHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHH
Confidence 468999996 999999888899999999999999999999999877642 569999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
..+|++++ .+||++.++|+ +||++ ....+ + .+|+.++
T Consensus 169 ~slAG~l~L~kLIvlyD~N~-IsiDG-----~~~~~--f------------------------------~ed~~~R---- 206 (663)
T COG0021 169 ASLAGHLKLGKLIVLYDSND-ISIDG-----DTSLS--F------------------------------TEDVAKR---- 206 (663)
T ss_pred HHHHhhcCCCcEEEEEeCCC-ceecc-----Ccccc--c------------------------------chhHHHH----
Confidence 99999999 77888888888 88843 33211 0 1456555
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK----- 223 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~----- 223 (563)
|+++||+++.++||||++++.+|+++|+.. .++||+|+|+|+.|+|.+..+ ++..+||.+.
T Consensus 207 ------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~ke-gt~~~HGapLg~~ev 272 (663)
T COG0021 207 ------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKE-GTHKVHGAPLGEEEV 272 (663)
T ss_pred ------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcC-CCccccCCCCCHHHH
Confidence 999999999999999999999999999973 679999999999999977644 5588999872
Q ss_pred --------CC-----CC------------CCcc------------------------------CCC-----------Ccc
Q 008493 224 --------FD-----PA------------TGKQ------------------------------FKS-----------SAR 237 (563)
Q Consensus 224 --------f~-----~~------------~~~~------------------------------~~~-----------~~~ 237 (563)
|+ .. .++. ++. ..+
T Consensus 273 ~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~ 352 (663)
T COG0021 273 AAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGK 352 (663)
T ss_pred HHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhhhccccc
Confidence 22 10 1100 000 012
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChH-----HHH-HhCCCCeeecccchHHHHHHHHHHhhCC-CeeEEe
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-----LFL-RRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCA 310 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~-----~~~-~~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~ 310 (563)
....|++..++|..+....|+++-.++||..|+.+. .+. ++|++|+|.+||+|++|.+++.|+|++| ++||..
T Consensus 353 ~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pygg 432 (663)
T COG0021 353 SIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGG 432 (663)
T ss_pred ccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecc
Confidence 256789999999999999999999999999998652 343 6778999999999999999999999996 699999
Q ss_pred echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCC
Q 008493 311 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 389 (563)
Q Consensus 311 ~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~ 389 (563)
||..|+.++..++ +.++.+++|+++|.+|.++ +|+||||||++++++.+|.+||+.|++|+|..|...+++.|+.+.+
T Consensus 433 TFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~ 511 (663)
T COG0021 433 TFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKD 511 (663)
T ss_pred eehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHHHHhcCC
Confidence 9999998988888 5889999999999999988 8999999999999999999999999999999999999999999889
Q ss_pred CCEEEEecCCCCCCccCCCCCCCCccccCceEEEee----CCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecccccc
Q 008493 390 RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIE----GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 465 (563)
Q Consensus 390 ~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~----g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~P 465 (563)
+|+++.++|++++.. +.. ........+|++++ +.|++||++||.+..|++|++.|+++|++++||+++|...
T Consensus 512 gPt~LiltRQnlp~l--~~t--~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~ 587 (663)
T COG0021 512 GPTALILTRQNLPVL--ERT--DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFEL 587 (663)
T ss_pred CCeEEEEecCCCCcc--CCC--ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 999999999986542 221 12223444688888 4799999999999999999999998889999999999999
Q ss_pred CcHH---HHHHHhccC-CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHH
Q 008493 466 LDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 541 (563)
Q Consensus 466 f~~~---~i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I 541 (563)
|+.+ +..+++... ...|.+|...+.||.. ++... -..+|+ ++|+.||+.+++++++|+|++.|
T Consensus 588 fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~k----y~g~~--------g~~ig~-~~FG~Sap~~~l~~~fGft~e~v 654 (663)
T COG0021 588 FEKQDEEYRESVLPGAVTARVAIEAGSALGWYK----YVGLD--------GAVIGM-DSFGASAPGDELFKEFGFTVENV 654 (663)
T ss_pred HHcCCHHHHHhhccCCccceEEEEeccccchhh----hcCCC--------CcEEee-ccCcCCCCHHHHHHHhCCCHHHH
Confidence 9764 445555443 4478999988888883 33322 235775 78999999999999999999999
Q ss_pred HHHHHHHhc
Q 008493 542 AATVFNILG 550 (563)
Q Consensus 542 ~~~i~~~~~ 550 (563)
++++++++.
T Consensus 655 v~~~~~~l~ 663 (663)
T COG0021 655 VAKAKSLLN 663 (663)
T ss_pred HHHHHHhhC
Confidence 999998763
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1.6e-67 Score=584.81 Aligned_cols=486 Identities=22% Similarity=0.240 Sum_probs=388.7
Q ss_pred CCCCccC---CCCCCCCCCCCCC-CcccCCCCCchhhHHHHHHHHhhhh-------cCCCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQT---DGLSGFTKRSESE-YDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~---~g~~g~~~~~~~~-~~~~~~g~~G~~l~~a~G~A~A~~~-------~~~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||. +|+++||++..+| .+.|.+|+||.++++|+|+|++.|+ ...+++||||+|||+++||.+|||
T Consensus 173 L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA 252 (896)
T PRK13012 173 LDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAA 252 (896)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHH
Confidence 4589998 4799999986665 6899999999999999999999984 345689999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+.+|++++ .||+|||++|+ +++ ||+++.++.+. +++.++
T Consensus 253 ~~~A~~~~LdNLi~ivD~N~-~~l-----DG~v~~~~~~~------------------------------~~l~~~---- 292 (896)
T PRK13012 253 LSLAAREGLDNLVFVINCNL-QRL-----DGPVRGNGRII------------------------------QELEAL---- 292 (896)
T ss_pred HHHHHHhCCCcEEEEEECCC-ccc-----cCccccccccc------------------------------hHHHHH----
Confidence 99999999 79999999999 565 66666544321 233333
Q ss_pred HhccccCCCcchhhhcCceEeecc-------------------------C------------------------------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPV-------------------------D------------------------------ 173 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~-------------------------d------------------------------ 173 (563)
|+++||+++.++ |
T Consensus 293 ------------f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~ 360 (896)
T PRK13012 293 ------------FRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVA 360 (896)
T ss_pred ------------HHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhh
Confidence 667777766443 6
Q ss_pred -------------CCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----------------
Q 008493 174 -------------GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK----------------- 223 (563)
Q Consensus 174 -------------G~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~----------------- 223 (563)
|||+++|.+|+++|++. .++|++|.++|+||+|.+.+.+..+.+|+..+
T Consensus 361 ~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~ 439 (896)
T PRK13012 361 HLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPL 439 (896)
T ss_pred cccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCC
Confidence 99999999999988852 56899999999999998754445567887321
Q ss_pred ---------CCC-CC---------------C----------ccC--CC-----------CcccccHHHHHHHHHHHHHhc
Q 008493 224 ---------FDP-AT---------------G----------KQF--KS-----------SARTQSYTTYFAEALIAEAEV 255 (563)
Q Consensus 224 ---------f~~-~~---------------~----------~~~--~~-----------~~~~~~~~~a~~~~l~~~~~~ 255 (563)
|.. ++ + .++ +. ..++++.+.|+.++|.++++.
T Consensus 440 ~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~ 519 (896)
T PRK13012 440 SDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKD 519 (896)
T ss_pred ChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhc
Confidence 111 00 0 000 00 113457799999999999987
Q ss_pred ---CCCEEEEecCCCCCcCh-------------------------HHHHHhCCCCeeecccchHHHHH--HHHHHhhC--
Q 008493 256 ---DKDVVAIHAAMGGGTGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE-- 303 (563)
Q Consensus 256 ---~~~v~~~~~D~~~s~~~-------------------------~~~~~~~p~r~i~~gi~E~~~~~--~a~G~a~~-- 303 (563)
.++||.+++|+.+++++ ..++++||+||+++||+|++|++ +|+|+|++
T Consensus 520 ~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~ 599 (896)
T PRK13012 520 KALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVH 599 (896)
T ss_pred cccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhc
Confidence 99999999999988755 23557899999999999999999 88888776
Q ss_pred --CCeeEEeechhh-HHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHH
Q 008493 304 --GLKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFH 379 (563)
Q Consensus 304 --G~~~~~~~~~~f-~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~ 379 (563)
|++||+.+|++| .+|++||+++.+++...++++++++++. .+++|+|||+.+++.+++.+||++|++|+|+.|+..
T Consensus 600 G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~ 679 (896)
T PRK13012 600 GLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAV 679 (896)
T ss_pred CCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHH
Confidence 679999999999 5999999988888888889999999887 689999999999999999999999999999999999
Q ss_pred HHHHHHhc-----CCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEe---eCCcEEEEEechhHHHHHHHHHHHHhC
Q 008493 380 MVATAAAI-----DDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILI---EGERVALLGYGTAVQSCLAASALLESN 451 (563)
Q Consensus 380 ~l~~a~~~-----~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~---~g~dv~iv~~G~~~~~~~~Aa~~L~~~ 451 (563)
+++.++++ .+.|+|||+.+.++....+|+. ....+..|+ ++++ ++.|++|+++|+++++|++|++.|+++
T Consensus 680 iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~-~~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e 757 (896)
T PRK13012 680 IVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEG-AEEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAARLLADD 757 (896)
T ss_pred HHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCcc-chhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhh
Confidence 99998743 2578999999987643334432 123344444 6674 366999999999999999999999999
Q ss_pred -CCceEEeeccccccCcHHHH-------------------HHHhcc-CCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCC
Q 008493 452 -GLRLTVADARFCKPLDHALI-------------------RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTV 510 (563)
Q Consensus 452 -Gi~v~vi~~~~l~Pf~~~~i-------------------~~~~~~-~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~ 510 (563)
||+++|++++|++||+++.+ .+++.. ..++|+++++.. .|++.+.+. .+.
T Consensus 758 ~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~~----~~~ 828 (896)
T PRK13012 758 WGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRAF----VPA 828 (896)
T ss_pred hCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHHh----CCC
Confidence 99999999999999999966 233332 245666555432 455555442 246
Q ss_pred ceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 511 KWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 511 ~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
++.++|+ |.|+.||+.++++++||+|++.|++++++++..
T Consensus 829 ~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~ 868 (896)
T PRK13012 829 RYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALAD 868 (896)
T ss_pred CeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8889997 899999999999999999999999999999855
No 20
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-67 Score=502.54 Aligned_cols=304 Identities=33% Similarity=0.561 Sum_probs=288.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHH
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 317 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~ 317 (563)
..++|++++..|.++.++++++|++++|+.+|+.+..|.++||+||+|+||+||.|+|+|+|+|++|++||+++|++|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEE
Q 008493 318 -RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 395 (563)
Q Consensus 318 -~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~ 395 (563)
|+||||+|..++.++||.++++|+|+ .|++|+|||..+|++++|.+||+.|+.|+|+.+++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999965 79999999
Q ss_pred ecCCCCCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh
Q 008493 396 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 475 (563)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~ 475 (563)
+.|...+.. +++ .++.|.+||++++++|.|++||++|.|+..+++|++.|+++||+++|||++|+||+|++.+.+..
T Consensus 165 l~R~~~p~~-~~~--~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE--GGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC--CCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764432 222 25899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 476 KSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 476 ~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
+++++||++|+|+ .||+|+.|++.+.+++ +.+++++|++++|+.+|+.++++++||||+++|++++++++
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 9999999999998 7999999999999986 68999999999999999999999999999999999998864
No 21
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.3e-56 Score=456.99 Aligned_cols=307 Identities=21% Similarity=0.285 Sum_probs=268.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC----hHHHHHhCCC-CeeecccchHHHHHHHHHHhhCCCeeEEee-
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 311 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~----~~~~~~~~p~-r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~- 311 (563)
..+++++++++|.+++++||+++++++|++.+.+ +++|+++||+ ||+|+||+|++|+|+|+|+|++|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 4689999999999999999999999999964444 5899999999 999999999999999999999999999997
Q ss_pred chhhHHHHHHHHHHHhccC--------CCCeEEEEeCCCCC-CCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHH
Q 008493 312 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLV-GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 382 (563)
Q Consensus 312 ~~~f~~~a~dqi~~~a~~~--------~~pv~~v~~~~G~~-g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~ 382 (563)
++.|++|++|||+++++++ ++||+++ ++|.. +.+|+|||+..+ ++++++||++|++|+|+.|++.+++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 5677899999999999887 5666665 45543 468999976665 9999999999999999999999999
Q ss_pred HHHhcCCCCEEEEecCCCCC-CccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 383 TAAAIDDRPSCFRYPRGNGI-GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 383 ~a~~~~~~P~~i~~~~~~~~-~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
++++ .++|+|||+++..+. +..+++ +.+.+++||+.++++|+|++||++|.+++.|++|++.|+++||+++|||++
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 9986 689999997665432 122332 346788999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccC-CCCHHHHHHHcCCCHH
Q 008493 462 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYID-HGSPADQLAQAGLTPS 539 (563)
Q Consensus 462 ~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ll~~~gl~~~ 539 (563)
|++|||++.|.++++++++||++|||. .||+|++|++.+.++++...+.++.+++++|.|.+ +++.+++ +++|++
T Consensus 237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~---~gl~~~ 313 (327)
T CHL00144 237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEA---TVIQPA 313 (327)
T ss_pred cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHH---hCCCHH
Confidence 999999999999999999999999997 79999999999999875333679999999999988 6666554 599999
Q ss_pred HHHHHHHHHhcccc
Q 008493 540 HIAATVFNILGQTR 553 (563)
Q Consensus 540 ~I~~~i~~~~~~~~ 553 (563)
+|+++++++++.+|
T Consensus 314 ~I~~~i~~~l~~~~ 327 (327)
T CHL00144 314 QIIEAVEQIITNKK 327 (327)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999986543
No 22
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.6e-55 Score=453.12 Aligned_cols=310 Identities=22% Similarity=0.321 Sum_probs=269.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC----hHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEee
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 311 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~----~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~ 311 (563)
++++|+++++++|.+++++|++++++++|++.+.+ +++|.++| |+||+|+||+|++|+++|+|+|++|+|||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999999999999999999999999976554 45777777 99999999999999999999999999999998
Q ss_pred -chhhHHHHHHHHHHHhccCC--------CCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHH
Q 008493 312 -YSSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 382 (563)
Q Consensus 312 -~~~f~~~a~dqi~~~a~~~~--------~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~ 382 (563)
++.|++|++|||++++++++ +||++++.+ |.....|+|||+.+ +++++++||++|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 57788999999999999887 999999877 54333699999887 59999999999999999999999999
Q ss_pred HHHhcCCCCEEEEecCCCCCCc-cCCC--CCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEee
Q 008493 383 TAAAIDDRPSCFRYPRGNGIGV-ELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVAD 459 (563)
Q Consensus 383 ~a~~~~~~P~~i~~~~~~~~~~-~~p~--~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~ 459 (563)
++++ .++|+|||+++...... ...+ .+.++.+++|+++++++|+|++||++|+++..|++|++.|+++||+++|||
T Consensus 183 ~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId 261 (356)
T PLN02683 183 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVIN 261 (356)
T ss_pred HHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9986 57999999754432110 0111 011356788999999999999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCC-C
Q 008493 460 ARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-T 537 (563)
Q Consensus 460 ~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl-~ 537 (563)
++|++|||++.+.++++++++|||+|||. .||+|++|++.+.++++...+.+++++|++|.++++ +..|+++++ +
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~---~~~le~~~~p~ 338 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPY---AANLERLALPQ 338 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCc---cHHHHHhhCCC
Confidence 99999999999999999999999999998 799999999999998754346799999999976554 677888887 9
Q ss_pred HHHHHHHHHHHhccc
Q 008493 538 PSHIAATVFNILGQT 552 (563)
Q Consensus 538 ~~~I~~~i~~~~~~~ 552 (563)
+++|++++++++.++
T Consensus 339 ~~~i~~a~~~~~~~~ 353 (356)
T PLN02683 339 VEDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999654
No 23
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.7e-55 Score=448.33 Aligned_cols=306 Identities=25% Similarity=0.357 Sum_probs=271.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC----hHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEeec
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 312 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~----~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~ 312 (563)
+.+|+++++++|.+++++|++++++++|++.+.+ +++|+++| |+||+|+||+|++|+++|+|+|++|+|||++++
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4579999999999999999999999999976665 38899999 999999999999999999999999999999997
Q ss_pred h-hhHHHHHHHHHHHhccC--------CCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHH
Q 008493 313 S-SFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 383 (563)
Q Consensus 313 ~-~f~~~a~dqi~~~a~~~--------~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~ 383 (563)
+ .|++|++|||+++++++ ++|+++++.+ |..+.+|+|||+..+ ++++++||++|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 6 67899999999999987 4666665443 435788999977777 99999999999999999999999999
Q ss_pred HHhcCCCCEEEEecCCCCCCc-cCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccc
Q 008493 384 AAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 462 (563)
Q Consensus 384 a~~~~~~P~~i~~~~~~~~~~-~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~ 462 (563)
|++ .++|+||++++..+... .+++ ..+.+++||+.++++|+|++||+||+++..+++|++.|+++|++++||++++
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 986 58999998876554321 1222 2456889999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCC-CHHH
Q 008493 463 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPSH 540 (563)
Q Consensus 463 l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl-~~~~ 540 (563)
++|||++.+.+.++++++||++|+|. .||++++|++.+.++++...+.++++++.++.|.+++ ++++++++ ++++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~ 314 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEED 314 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHH
Confidence 99999999999999999999999997 7999999999999986544467999999999998765 78999998 9999
Q ss_pred HHHHHHHHhcc
Q 008493 541 IAATVFNILGQ 551 (563)
Q Consensus 541 I~~~i~~~~~~ 551 (563)
|++++++++++
T Consensus 315 I~~~i~~~~~~ 325 (327)
T PRK09212 315 IIEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHHhh
Confidence 99999998854
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=3.8e-55 Score=462.14 Aligned_cols=306 Identities=22% Similarity=0.287 Sum_probs=273.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC----hHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEee
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 311 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~----~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~ 311 (563)
..++++++++++|.+++++|++++++++|++.+.+ ..+|.++| |+||+|+||+|++++|+|+|+|++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 45689999999999999999999999999976655 47899999 99999999999999999999999999999998
Q ss_pred c-hhhHHHHHHHHHHHhc--------cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHH
Q 008493 312 Y-SSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 382 (563)
Q Consensus 312 ~-~~f~~~a~dqi~~~a~--------~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~ 382 (563)
+ ..|++|++|||+|+++ ++++||++++.++|..+ .|+ ||+.+|+++++++||++|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 5 6778999999999999 89999999987766443 667 88888999999999999999999999999999
Q ss_pred HHHhcCCCCEEEEecCCCCCCc-cCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 383 TAAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 383 ~a~~~~~~P~~i~~~~~~~~~~-~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
++++ .++|+||++++..+... .+|.. .++.+++||++++++|+|++||++|+++..|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~~-~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPKL-DDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCCc-CCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9986 68999997655443221 23422 246788999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCC-CHH
Q 008493 462 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL-TPS 539 (563)
Q Consensus 462 ~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl-~~~ 539 (563)
||+|||+++|.++++++++|||+|+++ .||+|++|++.+.++++..++.++.+++++|.|.+ .+.++++++| +++
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~ 452 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVA 452 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHH
Confidence 999999999999999999999999998 79999999999999876545679999999998876 5789999998 999
Q ss_pred HHHHHHHHHh
Q 008493 540 HIAATVFNIL 549 (563)
Q Consensus 540 ~I~~~i~~~~ 549 (563)
+|++++++++
T Consensus 453 ~Iv~av~~~~ 462 (464)
T PRK11892 453 EVVEAVKAVC 462 (464)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 25
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-55 Score=422.24 Aligned_cols=304 Identities=27% Similarity=0.407 Sum_probs=272.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcCh-HHHHHhCC-CCeeecccchHHHHHHHHHHhhCCCeeEEee-c
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 312 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~---~s~~~-~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~-~ 312 (563)
+++++|++++|.+.|++|++|+++++|++ |.+++ .+|+++|+ +|++|+||+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 57899999999999999999999999986 44444 78999996 5999999999999999999999999999998 9
Q ss_pred hhhHHHHHHHHHHHhcc--------CCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHH
Q 008493 313 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 384 (563)
Q Consensus 313 ~~f~~~a~dqi~~~a~~--------~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a 384 (563)
.+|+..++|||.|++++ ..+|++++++.+|.. ..+.+|++..+ +++.++||++|+.|++|.|++++|+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~-~~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGI-GGGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCC-CchhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999984 579999998665432 35789999887 799999999999999999999999999
Q ss_pred HhcCCCCEEEEecCCCCC--CccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccc
Q 008493 385 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 462 (563)
Q Consensus 385 ~~~~~~P~~i~~~~~~~~--~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~ 462 (563)
++ +++||++++++..+. +.++|+ .+|..|+||+.+.|+|+|+|||+||.|++.+++|++.|.++||+++|||++|
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 76 899999999887643 356774 5799999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHc-CCCHHH
Q 008493 463 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQA-GLTPSH 540 (563)
Q Consensus 463 l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~-gl~~~~ 540 (563)
|+|+|+++|.++++|++++|+|++.. ++|+|++|++.+.++.|.+++.|+.|++.+|.+.++. ..+|++ -.++++
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~---~~lE~~~lp~~~~ 313 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYS---AALEKAYLPNPER 313 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcc---hhHHhhhCCCHHH
Confidence 99999999999999999999888875 8999999999999998888899999999999887653 335555 459999
Q ss_pred HHHHHHHHhc
Q 008493 541 IAATVFNILG 550 (563)
Q Consensus 541 I~~~i~~~~~ 550 (563)
|++++++++.
T Consensus 314 I~~av~~v~~ 323 (324)
T COG0022 314 IVAAVKKVLE 323 (324)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 26
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-54 Score=440.54 Aligned_cols=308 Identities=24% Similarity=0.363 Sum_probs=267.4
Q ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcC-hHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe
Q 008493 236 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTG-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 310 (563)
Q Consensus 236 ~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~---~s~~-~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~ 310 (563)
.++++|+++++++|.+++++||+++++++|++ +.++ +++|+++| |+||+|+||+|++|+++|+|+|++|+|||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999997 2232 58999999 9999999999999999999999999999999
Q ss_pred e-chhhHHHHHHHHHHHhccC--------CCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHH
Q 008493 311 I-YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 381 (563)
Q Consensus 311 ~-~~~f~~~a~dqi~~~a~~~--------~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l 381 (563)
+ |++|++|++|||+++++++ ++|++++. ..|..|.+|+||++..+ ++++++||++|++|+|+.|++.++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 8 8999999999999999975 45666553 22336789999977666 899999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCCCCccCCC-CCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeec
Q 008493 382 ATAAAIDDRPSCFRYPRGNGIGVELPP-GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 460 (563)
Q Consensus 382 ~~a~~~~~~P~~i~~~~~~~~~~~~p~-~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~ 460 (563)
+++++ .++|+||++++..+.. ..+. ....+.+++||+.++++|+|++||++|+++..+++|++.|+++|++++||++
T Consensus 190 ~~a~~-~~~P~~i~~p~~l~r~-~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 190 KAAIR-DPNPVVFFEPKLLYRE-SVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHHh-CCCcEEEEeehHHhCC-CCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99987 5899999877653221 1111 1124677899999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHH
Q 008493 461 RFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPS 539 (563)
Q Consensus 461 ~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~ 539 (563)
++++|||++.|.+.++++++||++|++. .||||++|++.+.++++..++.+++++|++|.|++++.. +.+.+.++++
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~ 345 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKE 345 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHH
Confidence 9999999999999999999999999997 799999999999998754346799999999999876533 5567789999
Q ss_pred HHHHHHHHHh
Q 008493 540 HIAATVFNIL 549 (563)
Q Consensus 540 ~I~~~i~~~~ 549 (563)
+|++++++++
T Consensus 346 ~i~~~~~~~~ 355 (355)
T PTZ00182 346 KVVEAAKRVL 355 (355)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 27
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=1.9e-49 Score=432.78 Aligned_cols=529 Identities=19% Similarity=0.229 Sum_probs=379.0
Q ss_pred CCCCccC---CCCCCCCCCCCCC-CcccCCCCCchhhHHHHHHHHhhhh-------cCCCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQT---DGLSGFTKRSESE-YDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~---~g~~g~~~~~~~~-~~~~~~g~~G~~l~~a~G~A~A~~~-------~~~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||. +|+++||++...| .+.|++|+||+++++|+|+|++.|+ ...+++||||+|||+++||.+|||
T Consensus 159 L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA 238 (885)
T TIGR00759 159 LDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGA 238 (885)
T ss_pred HHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHH
Confidence 4589994 5799999986555 5899999999999999999999986 456789999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHH-HH---hhhhhcc----------
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELRE-VA---KGVTKQI---------- 134 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~---~~~~~~~---------- 134 (563)
+.+|++++ .||++||++|+ +++ ||+++..+.+...++..+...+|+.++- |. ...+..+
T Consensus 239 ~~~Aa~~kLdNLi~IVD~N~-~ql-----DG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~ 312 (885)
T TIGR00759 239 ITFAAREKLDNLTFVINCNL-QRL-----DGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMN 312 (885)
T ss_pred HHHHHHhCCCCEEEEEeCCC-Ccc-----CCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHH
Confidence 99999999 79999999999 566 6666655553334444443444444321 00 0000000
Q ss_pred CCchHHHHH---HHHHHHh-cccc--CCCcchhhhcC---ceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 135 GGPMHELAA---KVDEYAR-GMIS--GSGSTLFEELG---LYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 135 ~~~~~~~~~---~~~~~~~-~~~~--~~~~~~~~~~G---~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
.....+++. +-..+.| +++. +....+++.+- ++.. ..+|||+++|.+|+++|++. .++|++|.++|+||
T Consensus 313 ~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l-~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG 390 (885)
T TIGR00759 313 ETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWAL-NRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKG 390 (885)
T ss_pred hcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhc-cCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeec
Confidence 000111111 1012222 2222 12222222221 1111 24799999999999988752 46899999999999
Q ss_pred CCcchhhhccccccCCCC------------CCC---------------CCC-------------------------cc--
Q 008493 206 RGYPYAEKAADKYHGVAK------------FDP---------------ATG-------------------------KQ-- 231 (563)
Q Consensus 206 ~g~~~~~~~~~~~h~~~~------------f~~---------------~~~-------------------------~~-- 231 (563)
+|.+.+.+..+.+|+.++ |.. +.+ .+
T Consensus 391 ~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~ 470 (885)
T TIGR00759 391 YGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLT 470 (885)
T ss_pred CCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence 999855555678887431 110 000 00
Q ss_pred CCC-----------CcccccHHHHHHHHHHHHHhc---CCCEEEEecCCCCCcChHHHHHh-------------------
Q 008493 232 FKS-----------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGGGTGLNLFLRR------------------- 278 (563)
Q Consensus 232 ~~~-----------~~~~~~~~~a~~~~l~~~~~~---~~~v~~~~~D~~~s~~~~~~~~~------------------- 278 (563)
+|+ ..++++.+.||.+.|..+++. .++||.+.+|.+.++++.++-.+
T Consensus 471 vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~ 550 (885)
T TIGR00759 471 VPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSL 550 (885)
T ss_pred CCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhh
Confidence 110 114567889999999999986 36899999999999998664321
Q ss_pred ------CCCCeeecccchHHHHHH--HHHHhhC--C--CeeEEeechhh-HHHHHHHHHHHhccCCCCeEEEEeCCCC--
Q 008493 279 ------FPTRCFDVGIAEQHAVTF--AAGLACE--G--LKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-- 343 (563)
Q Consensus 279 ------~p~r~i~~gi~E~~~~~~--a~G~a~~--G--~~~~~~~~~~f-~~~a~dqi~~~a~~~~~pv~~v~~~~G~-- 343 (563)
-.+|+++.||+|.++++. |+|.|.+ | +.||...|++| .+|..|.+ +.++.+...-++++..+|.
T Consensus 551 ~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d~~argfl~g~taGrtT 629 (885)
T TIGR00759 551 LAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAADQRARGFLLGATAGRTT 629 (885)
T ss_pred hhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhhhcCCceEeccCCCccc
Confidence 147999999999999987 7777764 6 68999999999 89999998 8999999999999999998
Q ss_pred CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc---CCCCEEEEecCC--CCCCccCCCCCCCCccccC
Q 008493 344 VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG--NGIGVELPPGNKGIPLEVG 418 (563)
Q Consensus 344 ~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~---~~~P~~i~~~~~--~~~~~~~p~~~~~~~~~~~ 418 (563)
..+.|.+||+.....+...+|||+.|.|+...|+..+++..+++ ....+|++++.. ++.....|+ ...-.+-
T Consensus 630 L~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~---~~~egIl 706 (885)
T TIGR00759 630 LNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPE---GAEEGIL 706 (885)
T ss_pred CCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCc---chHHhHH
Confidence 36789999987766677889999999999999999999999873 355688888763 332222222 2222233
Q ss_pred c-eEEEeeC------CcEEEEEechhHHHHHHHHHHHHhC-CCceEEeeccccccCcHHHH-------------------
Q 008493 419 K-GRILIEG------ERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALI------------------- 471 (563)
Q Consensus 419 k-~~~l~~g------~dv~iv~~G~~~~~~~~Aa~~L~~~-Gi~v~vi~~~~l~Pf~~~~i------------------- 471 (563)
| .|.+++. .+|.|+++|+++++|++|++.|+++ |+.++|++++|..-|..+..
T Consensus 707 kG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v 786 (885)
T TIGR00759 707 KGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYV 786 (885)
T ss_pred hCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHH
Confidence 3 3666652 3799999999999999999999886 99999999999988766532
Q ss_pred HHHhcc-CCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 472 RSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 472 ~~~~~~-~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
.+++.. ...||++-+.. --+...|..++ +.++..+| .|.|++|++.+++.++|++|++.|+.++.+.+.
T Consensus 787 ~~~L~~~~gP~va~tDy~-~~~~~qir~~v--------p~~~~~LG-tDgFGrSdtr~~lr~~fevDa~~IV~AAL~aL~ 856 (885)
T TIGR00759 787 AQVLNEADAPVIASTDYV-RAFAEQIRPYV--------PRKYVTLG-TDGFGRSDTRENLRHFFEVDAKSVVLAALYALA 856 (885)
T ss_pred HHHhccCCCCEEEEccch-hhhHHHHhhhc--------CCCceEec-CCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 222222 34677777653 12344443333 45778888 589999999999999999999999999999885
Q ss_pred c
Q 008493 551 Q 551 (563)
Q Consensus 551 ~ 551 (563)
.
T Consensus 857 ~ 857 (885)
T TIGR00759 857 D 857 (885)
T ss_pred h
Confidence 5
No 28
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3e-48 Score=362.82 Aligned_cols=307 Identities=24% Similarity=0.372 Sum_probs=267.9
Q ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEecCCC---CCcCh-HHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe
Q 008493 236 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 310 (563)
Q Consensus 236 ~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~---~s~~~-~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~ 310 (563)
.+.++.++|+++++.+.|++|+++++++++++ +++++ ++|.++| +.|++|+||+|.+..|+|.|+|+.|+||+|+
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence 45678999999999999999999999999986 55555 7888888 6799999999999999999999999999999
Q ss_pred e-chhhHHHHHHHHHHHhcc--------CCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHH
Q 008493 311 I-YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 381 (563)
Q Consensus 311 ~-~~~f~~~a~dqi~~~a~~--------~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l 381 (563)
. ...|.+.++|||+|.+++ +++|++++++. |.....|.+|+|.+. +++.++||++|++|++++|+++++
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLl 189 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLL 189 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHH
Confidence 7 688999999999999874 57888888654 323456889999987 789999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCCCCc--cCCC--CCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEE
Q 008493 382 ATAAAIDDRPSCFRYPRGNGIGV--ELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTV 457 (563)
Q Consensus 382 ~~a~~~~~~P~~i~~~~~~~~~~--~~p~--~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~v 457 (563)
+.|++ +++|+++++..-. +.. ++|+ .++++..+++|+.+-|+|+|+|||++..++..|++|++.|.++|++++|
T Consensus 190 KaAIR-d~NPVV~lEnelL-Yg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EV 267 (359)
T KOG0524|consen 190 KAAIR-DENPVVFLENELL-YGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEV 267 (359)
T ss_pred HHhcc-CCCCeEEEechhh-cCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCcee
Confidence 99976 8999999876543 322 2332 1245788999999999999999999999999999999999999999999
Q ss_pred eeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHc-C
Q 008493 458 ADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQA-G 535 (563)
Q Consensus 458 i~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~-g 535 (563)
|+++||+|||.++|..+++|+.++++||+.. .+|+|++|++.+.|+.+..++.|+.|+...|.+-+++. .+|.. -
T Consensus 268 InlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~---~lE~~a~ 344 (359)
T KOG0524|consen 268 INLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK---TLEDWAV 344 (359)
T ss_pred EeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch---hhHhhcC
Confidence 9999999999999999999999999999987 79999999999999877667899999998998888753 35554 5
Q ss_pred CCHHHHHHHHHHHh
Q 008493 536 LTPSHIAATVFNIL 549 (563)
Q Consensus 536 l~~~~I~~~i~~~~ 549 (563)
.++++|+.++++++
T Consensus 345 p~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 345 PQPADIVTAVKKLC 358 (359)
T ss_pred CCHHHHHHHHHHhh
Confidence 69999999999875
No 29
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.5e-44 Score=399.84 Aligned_cols=430 Identities=17% Similarity=0.176 Sum_probs=319.8
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCC------CcEEEEEccccc-ccchhHHHHHhhcccCCC---EEEEEeCCCCcccCcc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRK------NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTA 95 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~------~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~p---li~iv~nN~~~s~~t~ 95 (563)
.+|+|...|.|+|.|+|.++.+.+ ..+||++|||++ .+|.+||+||+|+.|++| +||||+||+ ++++|.
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 388999999999999999988776 788999999998 699999999999999987 999999999 777665
Q ss_pred cCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCC
Q 008493 96 TLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH 175 (563)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~ 175 (563)
..+.... .... .+++++|++.+ .|||+
T Consensus 392 ~~~~~s~------------------------------------~~~s----------------d~Ak~~giP~~-~VDG~ 418 (924)
T PRK09404 392 PPDDRST------------------------------------PYCT----------------DVAKMVQAPIF-HVNGD 418 (924)
T ss_pred HHHhccc------------------------------------hhHH----------------HHHeecCCcEE-EEcCC
Confidence 4332111 1111 23889999987 78999
Q ss_pred CHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc-------ccc--cCCC----------------------
Q 008493 176 NVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA-------DKY--HGVA---------------------- 222 (563)
Q Consensus 176 d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~-------~~~--h~~~---------------------- 222 (563)
|++++.++.+.|.+. +.++|++|++.|++-+|+...++.. ..| |--+
T Consensus 419 D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i 498 (924)
T PRK09404 419 DPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEM 498 (924)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999988877652 4578999999999999986433210 011 1000
Q ss_pred --------------------------CCC----------CCCCc-------------cCCC-------------------
Q 008493 223 --------------------------KFD----------PATGK-------------QFKS------------------- 234 (563)
Q Consensus 223 --------------------------~f~----------~~~~~-------------~~~~------------------- 234 (563)
.|. ..|+- .+|+
T Consensus 499 ~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~ 578 (924)
T PRK09404 499 VNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMA 578 (924)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHh
Confidence 000 00100 0111
Q ss_pred -CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc--------------C----hHHHHHhC-CCCeeecccchHHHH
Q 008493 235 -SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT--------------G----LNLFLRRF-PTRCFDVGIAEQHAV 294 (563)
Q Consensus 235 -~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~--------------~----~~~~~~~~-p~r~i~~gi~E~~~~ 294 (563)
..+..+|..|...++..+|++|++|+++++|++.++ + +.+|.++| +.|++|+||||.+++
T Consensus 579 ~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~ 658 (924)
T PRK09404 579 EGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVL 658 (924)
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHH
Confidence 113358999999999999999999999999997522 1 36788888 899999999999999
Q ss_pred HHHHHHhhCCCee--EEee-chhhHH---HHHHHHHHHh-cc--CCCCeEEEEeCCCCCCCCCCCCCC-hhhhhhhhcC-
Q 008493 295 TFAAGLACEGLKP--FCAI-YSSFMQ---RAYDQVVHDV-DL--QKLPVRFAMDRAGLVGADGPTHCG-SFDVTFMACL- 363 (563)
Q Consensus 295 ~~a~G~a~~G~~~--~~~~-~~~f~~---~a~dqi~~~a-~~--~~~pv~~v~~~~G~~g~~G~tH~~-~~d~~~~~~~- 363 (563)
|.+.|+|+.|.+| +++. |++|+. .++||+++.+ ++ ...+++++.++++ .| .|+.|++ ..+ ++++..
T Consensus 659 G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~-~g-~g~~hsS~~~E-~~l~~~~ 735 (924)
T PRK09404 659 GFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGY-EG-QGPEHSSARLE-RFLQLCA 735 (924)
T ss_pred HHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CC-CChhhhccCHH-HHHHhCC
Confidence 9999999999975 9998 999985 7799998886 43 2467888877653 33 3555554 444 677666
Q ss_pred -CCcEEEecCCHHHHHHHHHHHHhcC-CCCEEEEecCCCCCCc-------cCCCCCCCCccccCceEEEeeCCcE--EEE
Q 008493 364 -PNMVVMAPSDEAELFHMVATAAAID-DRPSCFRYPRGNGIGV-------ELPPGNKGIPLEVGKGRILIEGERV--ALL 432 (563)
Q Consensus 364 -p~~~v~~P~~~~e~~~~l~~a~~~~-~~P~~i~~~~~~~~~~-------~~p~~~~~~~~~~~k~~~l~~g~dv--~iv 432 (563)
|||+|+.|++|.|++++|+.++.++ ++|++++.+|..+... ++++ ..+...++++. .++++|+ +||
T Consensus 736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~--~~f~~vi~~~~-~~~~~~v~r~iv 812 (924)
T PRK09404 736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAE--GSFQPVIGDID-ELDPKKVKRVVL 812 (924)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCC--CCceeeccccc-ccCccceeEEEE
Confidence 6999999999999999999875334 6999999988764321 1111 11333444443 5667788 799
Q ss_pred EechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC----CEEEEEeCCCCCChHHHHHHHHHHcCCCCC
Q 008493 433 GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLAQDGLLDG 508 (563)
Q Consensus 433 ~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~----~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~ 508 (563)
|+|-+++.+++|++.+. ..++.||++++|.|||.++|.++++++ +.|++.|++.+.|.+..|...+...- +.
T Consensus 813 ~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~--~~ 888 (924)
T PRK09404 813 CSGKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL--PE 888 (924)
T ss_pred EcCHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHh--cc
Confidence 99999999999987543 349999999999999999999999886 45556666678999999988886421 11
Q ss_pred CCceEEeecCC
Q 008493 509 TVKWRPLVLPD 519 (563)
Q Consensus 509 ~~~~~~~~~~~ 519 (563)
..++.-+|-+.
T Consensus 889 ~~~~~y~gR~~ 899 (924)
T PRK09404 889 GQKLRYAGRPA 899 (924)
T ss_pred CCeeEEECCCC
Confidence 23455566433
No 30
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2e-42 Score=385.17 Aligned_cols=417 Identities=17% Similarity=0.165 Sum_probs=307.6
Q ss_pred CCCCchhhHHHHHHHHhhhhcCC------CCcEEEEEccccc-ccchhHHHHHhhcccCCCE---EEEEeCCCCcccCcc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGR------KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDM---IVILNDNKQVSLPTA 95 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~------~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~pl---i~iv~nN~~~s~~t~ 95 (563)
-+|++...|.++|.|+|.+..+. +..++|++|||++ .+|.+||+||+|+.|++|+ ||||+||+ ++++|.
T Consensus 314 pSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq-yg~tT~ 392 (929)
T TIGR00239 314 PSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ-IGFTTN 392 (929)
T ss_pred CcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEEEc
Confidence 48999999999999999988754 4678999999997 7999999999999999997 99999999 677664
Q ss_pred cCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCC
Q 008493 96 TLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH 175 (563)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~ 175 (563)
..++... ... ..+++++|++.+ .+||+
T Consensus 393 ~~~~~s~------------------------------------~~~----------------sd~Ak~ygiP~~-~VDG~ 419 (929)
T TIGR00239 393 PLDARST------------------------------------PYC----------------SDLAKMIQAPIF-HVNAD 419 (929)
T ss_pred HHHhcCc------------------------------------cCH----------------HHHheecCCCEE-EECCC
Confidence 3322111 011 123888999987 78999
Q ss_pred CHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc--------ccc-cCCC----------------------
Q 008493 176 NVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA--------DKY-HGVA---------------------- 222 (563)
Q Consensus 176 d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~--------~~~-h~~~---------------------- 222 (563)
|++++..+.+.|.+. +.++|++|++.|++-+|+...++.. .+. |--+
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999998877652 3578999999999999885433210 000 1100
Q ss_pred -------------------CCCC-----------------CCCc-------------cCCCC------------------
Q 008493 223 -------------------KFDP-----------------ATGK-------------QFKSS------------------ 235 (563)
Q Consensus 223 -------------------~f~~-----------------~~~~-------------~~~~~------------------ 235 (563)
+.+. .|+- .+++.
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~ 579 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAM 579 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHH
Confidence 0000 0100 00110
Q ss_pred ---cccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----------------C-hHHHHHhC-CCCeeecccchHHH
Q 008493 236 ---ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT-----------------G-LNLFLRRF-PTRCFDVGIAEQHA 293 (563)
Q Consensus 236 ---~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~-----------------~-~~~~~~~~-p~r~i~~gi~E~~~ 293 (563)
.+.++|.+|.+.++.++|++|++|+++++|++.++ . +.+|.++| +.|++|++|||.++
T Consensus 580 ~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~ 659 (929)
T TIGR00239 580 AAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESV 659 (929)
T ss_pred hcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHH
Confidence 12257999999999999999999999999997532 1 35788888 79999999999999
Q ss_pred HHHHHHHhhCCCeeE--Eee-chhhHH---HHHHHHHHHh-ccC--CCCeEEEEeCCCCCCCCCCCCCChhhhhhh--hc
Q 008493 294 VTFAAGLACEGLKPF--CAI-YSSFMQ---RAYDQVVHDV-DLQ--KLPVRFAMDRAGLVGADGPTHCGSFDVTFM--AC 362 (563)
Q Consensus 294 ~~~a~G~a~~G~~~~--~~~-~~~f~~---~a~dqi~~~a-~~~--~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~--~~ 362 (563)
+|.+.|+|+.|.+|+ ++. |++|+. .++||+++.+ +++ ..+++++.++++ .|..+..|++..+ +++ .+
T Consensus 660 ~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~lql~~ 737 (929)
T TIGR00239 660 LGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQGPEHSSGRLE-RFLQLAA 737 (929)
T ss_pred HHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCCCchhhccCHH-HHHHHhC
Confidence 999999999998774 887 999985 7799998884 433 466888877653 3433344444544 677 67
Q ss_pred CCCcEEEecCCHHHHHHHHH-HHHhcCCCCEEEEecCCCCCC-c------cCCCCCCCCccccCceE-----EEeeCCcE
Q 008493 363 LPNMVVMAPSDEAELFHMVA-TAAAIDDRPSCFRYPRGNGIG-V------ELPPGNKGIPLEVGKGR-----ILIEGERV 429 (563)
Q Consensus 363 ~p~~~v~~P~~~~e~~~~l~-~a~~~~~~P~~i~~~~~~~~~-~------~~p~~~~~~~~~~~k~~-----~l~~g~dv 429 (563)
.|||+|+.|++|.|++++|+ +|++..++|++++.+|..+.. . ++|+. .+..++++.. +.+++-+.
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~v~~ 815 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEGVKR 815 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccCCcE
Confidence 89999999999999999999 687655999999999876532 1 34432 2444454321 11223344
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCC----EEEEEeCCCCCChHHHHHHHHHH
Q 008493 430 ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE----VLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 430 ~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~----~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
+|+++| +++.++.+ +.++++|+++.||++++|+|||+++|.+.++++. .|++-|+....|-+..|...+..
T Consensus 816 vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 816 LVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred EEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 555555 77777777 6677789999999999999999999999998884 55666667777778888887764
No 31
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=3.4e-42 Score=358.42 Aligned_cols=529 Identities=19% Similarity=0.225 Sum_probs=383.0
Q ss_pred CCCCccCC---CCCCCCCCCCC-CCcccCCCCCchhhHHHHHHHHhhhhcC-------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTD---GLSGFTKRSES-EYDCFGTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~---g~~g~~~~~~~-~~~~~~~g~~G~~l~~a~G~A~A~~~~~-------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||.. |+++||+|..+ ..+.|.+++||-+.-.|+-.|.-.|++. ++++||||+|||++.|+...+|
T Consensus 162 LdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gA 241 (887)
T COG2609 162 LDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGA 241 (887)
T ss_pred HHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHH
Confidence 46789985 59999999654 4889999999999999999988777653 4789999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHH-----HHHHhhhhhcc-C-------
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL-----REVAKGVTKQI-G------- 135 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~------- 135 (563)
+..|+..+ .|++|||++|. +++ |+++...|.+...++.++-+.+|+.+ +.|.+-+..-. +
T Consensus 242 i~~A~re~LdNlifVincNl-QrL-----DgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~ 315 (887)
T COG2609 242 ITEAAREKLDNLIFVINCNL-QRL-----DGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMN 315 (887)
T ss_pred HHHHHHhcCCceEEEEecch-hhc-----CCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHH
Confidence 99999998 89999999998 465 88888888898999999988888876 22221111000 0
Q ss_pred -CchHHHHH---HHHHHHh-cccc--CCCcchhhhcCc---eEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 136 -GPMHELAA---KVDEYAR-GMIS--GSGSTLFEELGL---YYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 136 -~~~~~~~~---~~~~~~~-~~~~--~~~~~~~~~~G~---~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+...+++. +...++| .++. |...++.+.+.= +.. ...|||+..+++|+++|.+. .++||+|.++|+||
T Consensus 316 e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L-~rGGHD~~ki~aA~~~A~~~-kg~PtvilA~TIKG 393 (887)
T COG2609 316 ETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL-NRGGHDPEKVYAAFKKAQEH-KGRPTVILAKTIKG 393 (887)
T ss_pred hcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-hcCCCCHHHHHHHHHHHhcC-CCCceEEEEeeecc
Confidence 00011111 1112333 3332 233344444331 111 24799999999999999973 45899999999999
Q ss_pred CCcchhhhccccccCCCCC------------CCC----CCcc--------------------------------------
Q 008493 206 RGYPYAEKAADKYHGVAKF------------DPA----TGKQ-------------------------------------- 231 (563)
Q Consensus 206 ~g~~~~~~~~~~~h~~~~f------------~~~----~~~~-------------------------------------- 231 (563)
+|.+.+.+..+..|..++. +.. +++.
T Consensus 394 yglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l 473 (887)
T COG2609 394 YGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPAL 473 (887)
T ss_pred ccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCc
Confidence 9997544444566776432 110 0000
Q ss_pred -CC----------CCcccccHHHHHHHHHHHHHhcC---CCEEEEecCCCCCcChHHHHH--------------------
Q 008493 232 -FK----------SSARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGGGTGLNLFLR-------------------- 277 (563)
Q Consensus 232 -~~----------~~~~~~~~~~a~~~~l~~~~~~~---~~v~~~~~D~~~s~~~~~~~~-------------------- 277 (563)
+| ...+.++.+.||.+.|.++++.. ++||.+.+|...++++.++-.
T Consensus 474 ~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~ 553 (887)
T COG2609 474 PVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQV 553 (887)
T ss_pred cCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCCccchhhh
Confidence 01 11235677889999999999853 689999999999998865421
Q ss_pred -----hCCCCeeecccchHHHHHH--HHHHhhC--C--CeeEEeechhh-HHHHHHHHHHHhccCCCCeEEEEeCCCC--
Q 008493 278 -----RFPTRCFDVGIAEQHAVTF--AAGLACE--G--LKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-- 343 (563)
Q Consensus 278 -----~~p~r~i~~gi~E~~~~~~--a~G~a~~--G--~~~~~~~~~~f-~~~a~dqi~~~a~~~~~pv~~v~~~~G~-- 343 (563)
.-.+++++.||+|.++++. |+|.|+. | +.||.-.|++| ++|..|.+ +.+|.+..--.+++..+|.
T Consensus 554 ~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~dq~ARgFLlgaTagrtT 632 (887)
T COG2609 554 MYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGDQDARGFLLGATAGRTT 632 (887)
T ss_pred hhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHhhhhcceeEeecCCCce
Confidence 1147899999999999986 7777764 6 68999889999 79999998 8999999996666655555
Q ss_pred CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCC------CCEEEEecCCCCCCccCCCCCCCCcccc
Q 008493 344 VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD------RPSCFRYPRGNGIGVELPPGNKGIPLEV 417 (563)
Q Consensus 344 ~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~------~P~~i~~~~~~~~~~~~p~~~~~~~~~~ 417 (563)
+.+.|.+|++....-+-..+|||+.|.|+...|+..+++.++++-. .-.||++....++....|.. ....+
T Consensus 633 LngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~g---ae~gI 709 (887)
T COG2609 633 LNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEG---AEEGI 709 (887)
T ss_pred eCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCc---chhhh
Confidence 3667999998665445567899999999999999999999987421 22455555544443333332 22334
Q ss_pred Cce-EEEee-----CCcEEEEEechhHHHHHHHHHHHHh-CCCceEEeeccccccCcHH-------------------HH
Q 008493 418 GKG-RILIE-----GERVALLGYGTAVQSCLAASALLES-NGLRLTVADARFCKPLDHA-------------------LI 471 (563)
Q Consensus 418 ~k~-~~l~~-----g~dv~iv~~G~~~~~~~~Aa~~L~~-~Gi~v~vi~~~~l~Pf~~~-------------------~i 471 (563)
-|+ |.++. +..+.|+++|...+++++|++.|++ -|+.++|++++|...+-.+ ++
T Consensus 710 ~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv 789 (887)
T COG2609 710 IKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYV 789 (887)
T ss_pred hhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHH
Confidence 444 55543 3589999999999999999999988 5999999999987765433 44
Q ss_pred HHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 472 RSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 472 ~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
.+.+.....+|.+-+... .+.+.|.+++ |.+++.+| .|.|++|++.+++.++|.+|+..|+-++.+.+.+
T Consensus 790 ~~~L~~~~p~Va~tDy~~-~~a~qir~~v--------p~~y~vLG-tdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~ 859 (887)
T COG2609 790 AQVLNADGPVVAVTDYMK-LFAEQIRAVV--------PQRYRVLG-TDGFGRSDSRENLRRFFEVDAYYVVVAALSALAK 859 (887)
T ss_pred HHHhccCCCeEEechhhH-hHHHHHhccc--------CCeeEEec-cCCCCccCcHHHHHHHhccchHHHHHHHHHHHhc
Confidence 555554467777766541 2333333333 45566777 5899999999999999999999999999998755
No 32
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=6.4e-40 Score=359.07 Aligned_cols=471 Identities=18% Similarity=0.199 Sum_probs=339.1
Q ss_pred CccC---CCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccch---hHHHHHhhcccC
Q 008493 4 MRQT---DGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQ---AYEAMNNAGYLD 77 (563)
Q Consensus 4 ~r~~---~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~---~~Eal~~a~~~~ 77 (563)
|||+ ||++||+.+ +.|.....+|.+|++++.|+|+|++.+ +.+|+|++|||+.++|. .|++.+++...+
T Consensus 117 frqfs~pgg~~sH~~~-~tPGi~~~~G~LG~gls~A~G~Al~~~----d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~ 191 (785)
T PRK05261 117 FKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAAFDNP----DLIVACVVGDGEAETGPLATSWHSNKFLNPAT 191 (785)
T ss_pred HHhccCCCCcCCCCCC-CCCCeeeCCCchhhHHHHHHHHHHcCC----CCEEEEEECcCchhhhhhHHHhhhhhhccccc
Confidence 5666 579999985 678888999999999999999998654 88999999999999997 488888887776
Q ss_pred -CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCC
Q 008493 78 -SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 156 (563)
Q Consensus 78 -~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (563)
.+++.|+++|+ +++++.+..... ..+++.++
T Consensus 192 ~g~vLPIld~Ng-~~Is~pt~~~~~-----------------------------------~~e~l~~r------------ 223 (785)
T PRK05261 192 DGAVLPILHLNG-YKIANPTILARI-----------------------------------SDEELEAL------------ 223 (785)
T ss_pred CCCEEEEEEecC-CcCCCCcccccc-----------------------------------CcHhHHHH------------
Confidence 88999999999 677554432110 01344544
Q ss_pred CcchhhhcCceEeeccCCCCHHHHHHH--------HH-------HHhcc-CCCCcE--EEEEEecccCCcch------hh
Q 008493 157 GSTLFEELGLYYIGPVDGHNVDDLVAI--------LE-------EVKNT-KTTGPV--LIHVVTEKGRGYPY------AE 212 (563)
Q Consensus 157 ~~~~~~~~G~~~~~~~dG~d~~~l~~a--------~~-------~a~~~-~~~~P~--~I~v~t~~g~g~~~------~~ 212 (563)
+++|||+.+ .+||+|++++.++ ++ +|+.. ...+|+ +|.++|.||+|-+. .|
T Consensus 224 ----f~g~Gw~~i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e 298 (785)
T PRK05261 224 ----FRGYGYEPY-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE 298 (785)
T ss_pred ----HHHCCCeeE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC
Confidence 999999988 6799999887777 33 33321 115899 99999999999552 23
Q ss_pred hccccccCCCC-------------------------CCCC------------CC------------cc------CCC---
Q 008493 213 KAADKYHGVAK-------------------------FDPA------------TG------------KQ------FKS--- 234 (563)
Q Consensus 213 ~~~~~~h~~~~-------------------------f~~~------------~~------------~~------~~~--- 234 (563)
.+.+.|+++. |+.. +| .. ++.
T Consensus 299 -Gs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~ 377 (785)
T PRK05261 299 -GSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRD 377 (785)
T ss_pred -CCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHh
Confidence 3346688752 2210 00 00 000
Q ss_pred ---------CcccccHHHHHHHHHHHHHhcCCC-EEEEecCCCCCcChHH-HH----------------HhCCCCeeecc
Q 008493 235 ---------SARTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNL-FL----------------RRFPTRCFDVG 287 (563)
Q Consensus 235 ---------~~~~~~~~~a~~~~l~~~~~~~~~-v~~~~~D~~~s~~~~~-~~----------------~~~p~r~i~~g 287 (563)
......++. ++..|.++++.+|+ ++++++|+..|+++.. |. ....+|+++ +
T Consensus 378 ~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~ 455 (785)
T PRK05261 378 YAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-V 455 (785)
T ss_pred hcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-e
Confidence 001223444 89999999999999 9999999998887643 21 122389999 9
Q ss_pred cchHHHHHHHHHHhhCCCeeEEeechhhH---HHHHHHHHHHhc---c----CCCC-eEEEEeCCCC-CCCCCCCCCC--
Q 008493 288 IAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQVVHDVD---L----QKLP-VRFAMDRAGL-VGADGPTHCG-- 353 (563)
Q Consensus 288 i~E~~~~~~a~G~a~~G~~~~~~~~~~f~---~~a~dqi~~~a~---~----~~~p-v~~v~~~~G~-~g~~G~tH~~-- 353 (563)
++|++|.|++.|+++.|.++++.+|..|+ ..++.|+.-.+- . ..++ +.++.++-.. .|.+|+|||+
T Consensus 456 LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg 535 (785)
T PRK05261 456 LSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPG 535 (785)
T ss_pred ecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCch
Confidence 99999999999999999999999999998 778877732222 0 1122 3355565555 6899999999
Q ss_pred -hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCc-eEEEe--e----
Q 008493 354 -SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGK-GRILI--E---- 425 (563)
Q Consensus 354 -~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k-~~~l~--~---- 425 (563)
++.+.-++. |+++||.|+|.+|+..+++.|+++.+.|.+|.++|++++.. ....+. ...+.+ ++++. +
T Consensus 536 ~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~--~~~~~a-~~~~~kGayi~~~a~~~~~ 611 (785)
T PRK05261 536 FIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQW--LSMDEA-RKHCTKGLGIWDWASNDDG 611 (785)
T ss_pred HHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCccc--CChHHH-HHhccCceEEEEeccCCCC
Confidence 888887777 99999999999999999999999889999999999985432 111100 011223 35555 2
Q ss_pred -CCcEEEEEechhHHH-HHHHHHHHHhC--CCceEEeecccccc------------CcHHHHHHHhccCCEEEEEeCCCC
Q 008493 426 -GERVALLGYGTAVQS-CLAASALLESN--GLRLTVADARFCKP------------LDHALIRSLAKSHEVLITVEEGSI 489 (563)
Q Consensus 426 -g~dv~iv~~G~~~~~-~~~Aa~~L~~~--Gi~v~vi~~~~l~P------------f~~~~i~~~~~~~~~vvvvE~~~~ 489 (563)
+.|++|+|+|+++.. |++|++.|+++ |++++||++. .+ ++.+.+.++....+.||+.=
T Consensus 612 ~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~---- 685 (785)
T PRK05261 612 EEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF---- 685 (785)
T ss_pred CCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe----
Confidence 359999999999988 99999999999 9999999995 33 34456777776666665532
Q ss_pred CChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 490 GGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 490 gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
-|....|...+.... ...++...|..++ +..-++-+++-.+++|--.++..+.+-+
T Consensus 686 hgyp~~i~~l~~~r~---~~~~~~v~gy~e~-g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 686 HGYPWLIHRLTYRRT---NHHNFHVRGYKEE-GTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred CCCHHHHHHHhccCC---CCCccEEEEEecC-CCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 234445555554331 1345666676443 3445677888899999888887776643
No 33
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-39 Score=298.24 Aligned_cols=305 Identities=20% Similarity=0.299 Sum_probs=257.1
Q ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEecCCC--CCcC-hHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEee
Q 008493 236 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG--GGTG-LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 311 (563)
Q Consensus 236 ~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~--~s~~-~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~ 311 (563)
.++++.-.+++++|+-.++.||+-+++++|++ +.+. ..+|+++| .+|++|+|++||+++|..+|+|..|.+.+.++
T Consensus 38 ~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 38 KKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 35678889999999999999999999999986 3332 25788888 58999999999999999999999999999999
Q ss_pred -chhhHHHHHHHHHHHhccC--------CCC-eEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHH
Q 008493 312 -YSSFMQRAYDQVVHDVDLQ--------KLP-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 381 (563)
Q Consensus 312 -~~~f~~~a~dqi~~~a~~~--------~~p-v~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l 381 (563)
|++|+..++|||.|.+++. ++- .+++ ..+|.+|..+..|+++.+ +++.+.||++|+.|.+|.|+++++
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakgll 195 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLL 195 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhcee
Confidence 9999999999999999852 332 4444 446667888999999988 789999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCCCC--ccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHH-hCCCceEEe
Q 008493 382 ATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE-SNGLRLTVA 458 (563)
Q Consensus 382 ~~a~~~~~~P~~i~~~~~~~~~--~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~-~~Gi~v~vi 458 (563)
..+++ +++|+++++++-.+.. .++|+ .+|..|++.+.++++|+|+|+|+||..++.++|++..-+ +.|++++||
T Consensus 196 lscir-dpnp~iffepk~lyr~a~edvp~--~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevi 272 (362)
T KOG0525|consen 196 LSCIR-DPNPCIFFEPKILYRQAVEDVPE--GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVI 272 (362)
T ss_pred eeecc-CCCceEEechHHHHHHhhhhCCC--CCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEE
Confidence 99976 8999999998764321 34565 368899999999999999999999999999999987554 469999999
Q ss_pred eccccccCcHHHHHHHhccCCEE-EEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcC-C
Q 008493 459 DARFCKPLDHALIRSLAKSHEVL-ITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAG-L 536 (563)
Q Consensus 459 ~~~~l~Pf~~~~i~~~~~~~~~v-vvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~g-l 536 (563)
|+.+|-|+|.+.+.+++++++++ |..|...+||+|++|++.+.+++++.+..|+-|++.-|.+.+. +.|.+. .
T Consensus 273 dlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~p 347 (362)
T KOG0525|consen 273 DLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMP 347 (362)
T ss_pred eeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccC
Confidence 99999999999999998887655 4556566999999999999999998888888888766655442 234444 5
Q ss_pred CHHHHHHHHHHHhc
Q 008493 537 TPSHIAATVFNILG 550 (563)
Q Consensus 537 ~~~~I~~~i~~~~~ 550 (563)
+...|.++|++.+.
T Consensus 348 tk~ki~daik~~vn 361 (362)
T KOG0525|consen 348 TKNKILDAIKKTVN 361 (362)
T ss_pred cHhHHHHHHHHhcc
Confidence 88999999998654
No 34
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.7e-35 Score=282.71 Aligned_cols=186 Identities=60% Similarity=0.962 Sum_probs=118.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|+|+||+||++|||+|.||+||.|++||.|+++++|+|+|.|+.+.++++.||+++|||++..||++||||.|+..+.|+
T Consensus 85 f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~l 164 (270)
T PF13292_consen 85 FHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNL 164 (270)
T ss_dssp GGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SE
T ss_pred hchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++|++||+ +|| .+++|++++++.+++.++.|+.++...+.+.... .......++++..++++ .+ .+
T Consensus 165 iVILNDN~-mSI--------s~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~---~l 230 (270)
T PF13292_consen 165 IVILNDNE-MSI--------SPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP---NL 230 (270)
T ss_dssp EEEEEE-S-BSS--------SB--SSHCCC------------------------------------------------CC
T ss_pred EEEEeCCC-ccc--------CCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH---HH
Confidence 99999999 665 5679999999999999999999999888877655 44566666777777776 33 88
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEe
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t 202 (563)
|+++|+.|++++||||+++|.++++++++ .++|++|||.|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 99999999999999999999999999998 68999999987
No 35
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=4.7e-34 Score=262.10 Aligned_cols=154 Identities=50% Similarity=0.823 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHH
Q 008493 244 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQV 323 (563)
Q Consensus 244 a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi 323 (563)
+++++|.+++++||+++++++|++.++.+.+|.++||+|++|+||+|++++++|+|+|+.|++|++++|+.|+.|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 67899999999999999999999988888999999999999999999999999999999999999999988889999999
Q ss_pred HHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecC
Q 008493 324 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 398 (563)
Q Consensus 324 ~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~ 398 (563)
+++++++++||+++++++|+ .+.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|+|+|++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999998887 5689999999999999999999999999999999999999997 46799999875
No 36
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.97 E-value=3.2e-31 Score=244.40 Aligned_cols=152 Identities=29% Similarity=0.409 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCC----cChHHHHHhCCC-CeeecccchHHHHHHHHHHhhCCCeeEEe-echhhHH
Q 008493 244 YFAEALIAEAEVDKDVVAIHAAMGGG----TGLNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQ 317 (563)
Q Consensus 244 a~~~~l~~~~~~~~~v~~~~~D~~~s----~~~~~~~~~~p~-r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~~~~f~~ 317 (563)
+++++|.+++++||+++++++|++.+ ..+++|+++||+ ||+|+||+|++++|+|+|+|+.|++||++ +|++|+.
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHH
Confidence 68899999999999999999998642 245889999999 99999999999999999999999999999 5999999
Q ss_pred HHHHHHHHHhccC--------CCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCC
Q 008493 318 RAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 389 (563)
Q Consensus 318 ~a~dqi~~~a~~~--------~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~ 389 (563)
|++|||+++++++ ++||++++.++| .+.+|+||++ +++++++++||++|++|+|+.|++.+++++++ .+
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths~-~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~~ 158 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHSQ-SLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-DD 158 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhhh-hHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-CC
Confidence 9999999999976 599999987766 4678999764 56799999999999999999999999999986 57
Q ss_pred CCEEEEecC
Q 008493 390 RPSCFRYPR 398 (563)
Q Consensus 390 ~P~~i~~~~ 398 (563)
+|++++++|
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999875
No 37
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=2.5e-31 Score=249.79 Aligned_cols=165 Identities=41% Similarity=0.549 Sum_probs=142.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhC---CCCeeecccchHHHHHHHHHHhhCC--CeeEEee
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF---PTRCFDVGIAEQHAVTFAAGLACEG--LKPFCAI 311 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~---p~r~i~~gi~E~~~~~~a~G~a~~G--~~~~~~~ 311 (563)
++++|+++++++|.+++++|++++++++|+++++....+.+.+ |+|++|+||+|++++++|+|+|++| ++|++.+
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~ 80 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVEST 80 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEee
Confidence 3678999999999999999999999999999776554444333 6699999999999999999999999 6777778
Q ss_pred chhhHH----HHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh
Q 008493 312 YSSFMQ----RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA 386 (563)
Q Consensus 312 ~~~f~~----~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~ 386 (563)
|++|+. |+++|++++.+++++||. ++.+.|+ .+.+|+|||+.+|+++++++||++|++|+|+.|++++++++++
T Consensus 81 f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~ 159 (178)
T PF02779_consen 81 FADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIR 159 (178)
T ss_dssp EGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 999998 999999999999999999 6777776 6889999999999999999999999999999999999999998
Q ss_pred c-CCCCEEEEecCCCCC
Q 008493 387 I-DDRPSCFRYPRGNGI 402 (563)
Q Consensus 387 ~-~~~P~~i~~~~~~~~ 402 (563)
+ +++|+|||++|..++
T Consensus 160 ~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 160 RESDGPVYIREPRGLYP 176 (178)
T ss_dssp SSSSSEEEEEEESSEES
T ss_pred hCCCCeEEEEeeHHhCC
Confidence 5 589999999998643
No 38
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.95 E-value=1.9e-27 Score=221.68 Aligned_cols=158 Identities=42% Similarity=0.608 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHHHHhcCC-CEEEEecCCCCCcChHHHHHhCCCC-------eeecccchHHHHHHHHHHhhCCCeeEEee
Q 008493 240 SYTTYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLRRFPTR-------CFDVGIAEQHAVTFAAGLACEGLKPFCAI 311 (563)
Q Consensus 240 ~~~~a~~~~l~~~~~~~~-~v~~~~~D~~~s~~~~~~~~~~p~r-------~i~~gi~E~~~~~~a~G~a~~G~~~~~~~ 311 (563)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||++ |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 368899999999999965 99999999987776542 5667665 99999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCC
Q 008493 312 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 390 (563)
Q Consensus 312 ~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~ 390 (563)
|..|+.+++||+++.+++.+.|+++... +|. .|.+|+|||+.+++++++++||++|++|+|+.|++.+++++++..++
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~-~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~ 158 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHD-SGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDG 158 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEec-CccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCC
Confidence 9999999999998777766455544332 444 67889999999999999999999999999999999999999975578
Q ss_pred CEEEEecCC
Q 008493 391 PSCFRYPRG 399 (563)
Q Consensus 391 P~~i~~~~~ 399 (563)
|+|||++++
T Consensus 159 p~~i~~~~~ 167 (168)
T smart00861 159 PPVIRLERK 167 (168)
T ss_pred CEEEEecCC
Confidence 999998764
No 39
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=1.4e-27 Score=226.73 Aligned_cols=147 Identities=69% Similarity=1.107 Sum_probs=129.2
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.+||+.++++|||.+.+++.+.+++|++|+++|+|+|+|+|.|+.+++++|||++|||+++||++||++++|+.+++|+
T Consensus 49 l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~l 128 (195)
T cd02007 49 FHTLRQYGGLSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNM 128 (195)
T ss_pred HhhhhcCCCCCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCE
Confidence 46899999999999987788888999999999999999999999999899999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+ +++.+.+. +. ..+
T Consensus 129 i~vvdnN~-~~~~~~~~------------------------------------------~~----------------~~~ 149 (195)
T cd02007 129 IVILNDNE-MSISPNVG------------------------------------------TP----------------GNL 149 (195)
T ss_pred EEEEECCC-cccCCCCC------------------------------------------CH----------------HHH
Confidence 99999999 55432211 01 122
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
++++||.+..++||+|++++.++++++++ .++|++|+++|.||+|+
T Consensus 150 ~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 150 FEELGFRYIGPVDGHNIEALIKVLKEVKD--LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred HHhcCCCccceECCCCHHHHHHHHHHHHh--CCCCEEEEEEEecccCc
Confidence 77899988766899999999999999986 67899999999999985
No 40
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.94 E-value=1.6e-27 Score=242.31 Aligned_cols=166 Identities=31% Similarity=0.531 Sum_probs=132.1
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
+.+||+.++ ++|||+....+.+.+++|++|+++++|+|+|+|.|+.+ .+++|||++|||+++||.+|||
T Consensus 84 L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA 163 (332)
T PF00456_consen 84 LKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEA 163 (332)
T ss_dssp HTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHH
T ss_pred HHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHH
Confidence 368999996 99999977789999999999999999999999988653 2678999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+.+|+.++ .||++|+++|+ +++++.+ ..+ + .+++.++
T Consensus 164 ~~~A~~~~L~nLi~i~D~N~-~q~dg~~-----~~~--~------------------------------~~~~~~k---- 201 (332)
T PF00456_consen 164 ASLAGHYKLDNLIVIYDSNG-IQIDGPT-----DIV--F------------------------------SEDIAKK---- 201 (332)
T ss_dssp HHHHHHTT-TTEEEEEEEES-EETTEEG-----GGT--H------------------------------HSHHHHH----
T ss_pred HHHHHHhCCCCEEEEEecCC-cccCCCc-----ccc--c------------------------------chHHHHH----
Confidence 99999999 78999999999 6663322 100 0 1345555
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~ 222 (563)
+++|||+++.+.||||+++|.+|+++++.. .++|++|.++|++|+|.+..+ +...||+.+
T Consensus 202 ------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e-~~~~~Hg~~ 261 (332)
T PF00456_consen 202 ------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFME-GTAKWHGSP 261 (332)
T ss_dssp ------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTT-TSGGGTSS-
T ss_pred ------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhc-ccchhhccC
Confidence 999999999666999999999999999862 489999999999999998766 457899975
No 41
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.94 E-value=5.5e-27 Score=216.28 Aligned_cols=149 Identities=34% Similarity=0.552 Sum_probs=130.0
Q ss_pred CCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CC
Q 008493 2 HTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SD 79 (563)
Q Consensus 2 ~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~p 79 (563)
.+|++.++ |+|||.+..+|....++|++|++||.|+|+|++.|+.+.+.+|++++|||+++||..|||+.+|++++ .|
T Consensus 93 ~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~N 172 (243)
T COG3959 93 ETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDN 172 (243)
T ss_pred HHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCc
Confidence 57899997 99999998889999999999999999999999999999999999999999999999999999999999 88
Q ss_pred EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcc
Q 008493 80 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 159 (563)
Q Consensus 80 li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (563)
|+.||+.|+ .+++.++.+ +- +.+++.+|
T Consensus 173 LiaivD~N~-~QldG~t~~-----i~-------------------------------~~~pL~~k--------------- 200 (243)
T COG3959 173 LIAIVDRNK-LQLDGETEE-----IM-------------------------------PKEPLADK--------------- 200 (243)
T ss_pred EEEEEecCC-cccCCchhh-----cc-------------------------------CcchhHHH---------------
Confidence 999999998 565333221 11 12456666
Q ss_pred hhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 160 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 160 ~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++|||+++ .+||||++++.+|+.+++.. .++|++|+++|+||
T Consensus 201 -~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 201 -WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred -HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 999999998 78999999999999999873 34999999999986
No 42
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.94 E-value=2.2e-26 Score=233.79 Aligned_cols=166 Identities=25% Similarity=0.275 Sum_probs=135.4
Q ss_pred CCCCccCCC---CCCCCCCCCCCC-cccCCCCCchhhHHHHHHHHhhhh-------cCCCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG---LSGFTKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g---~~g~~~~~~~~~-~~~~~g~~G~~l~~a~G~A~A~~~-------~~~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||.++ +++||++..++. ..+++|++|+++++|+|+|+|.|+ .+.+++|||++|||+++||++|||
T Consensus 88 L~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA 167 (386)
T cd02017 88 LDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGA 167 (386)
T ss_pred HHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHH
Confidence 468999998 999998865554 889999999999999999999997 456789999999999999999999
Q ss_pred HHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.++ .||++||++|+ +++ ++.+..++. ..+++.++
T Consensus 168 ~~~Ag~~kL~NLivIvD~N~-~qi-----dG~t~~v~~------------------------------~~e~l~~k---- 207 (386)
T cd02017 168 IGLAAREKLDNLIFVVNCNL-QRL-----DGPVRGNGK------------------------------IIQELEGI---- 207 (386)
T ss_pred HHHHHHhCCCCEEEEEECCC-Ccc-----CCccccccc------------------------------CchhHHHH----
Confidence 99999999 79999999999 666 333332211 01455555
Q ss_pred HhccccCCCcchhhhcCceEeeccC-------------------------------------------------------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVD------------------------------------------------------- 173 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~d------------------------------------------------------- 173 (563)
|++|||+++ .++
T Consensus 208 ------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~ 274 (386)
T cd02017 208 ------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALV 274 (386)
T ss_pred ------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHh
Confidence 888898887 355
Q ss_pred --------------CCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccC
Q 008493 174 --------------GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHG 220 (563)
Q Consensus 174 --------------G~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~ 220 (563)
|||+++|.+|++++++. .++|++|.++|+||+|.+.+.+..+.||+
T Consensus 275 ~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~~~~h~ 334 (386)
T cd02017 275 TDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGRNHAHQ 334 (386)
T ss_pred hcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCCcchhc
Confidence 99999999999998852 46899999999999998853334567886
No 43
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.93 E-value=1.5e-25 Score=222.65 Aligned_cols=165 Identities=35% Similarity=0.554 Sum_probs=136.4
Q ss_pred CCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCC-
Q 008493 2 HTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD- 79 (563)
Q Consensus 2 ~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~p- 79 (563)
.+||+.++ ++|||++..++...+++|++|+++|+|+|+|+|.++.+++++|||++|||++++|++||++++|+.+++|
T Consensus 79 ~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~ 158 (255)
T cd02012 79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDN 158 (255)
T ss_pred HHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCc
Confidence 47899985 9999998777788899999999999999999999999999999999999999999999999999999965
Q ss_pred EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcc
Q 008493 80 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 159 (563)
Q Consensus 80 li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (563)
+++|++||+ +++.+...+ . + ...++. .
T Consensus 159 li~vvdnN~-~~~~~~~~~-----~--~-----------------------------~~~~~~----------------~ 185 (255)
T cd02012 159 LIAIVDSNR-IQIDGPTDD-----I--L-----------------------------FTEDLA----------------K 185 (255)
T ss_pred EEEEEECCC-ccccCcHhh-----c--c-----------------------------CchhHH----------------H
Confidence 888887777 554221100 0 0 012333 3
Q ss_pred hhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC
Q 008493 160 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 222 (563)
Q Consensus 160 ~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~ 222 (563)
+++++||+++ .++|||++++.++++++++. .++|++|+++|.||+|++..|. ...||+.+
T Consensus 186 ~~~a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 186 KFEAFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HHHHcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 4999999987 68999999999999999862 2789999999999999997774 57789765
No 44
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.91 E-value=2.3e-22 Score=207.61 Aligned_cols=252 Identities=18% Similarity=0.136 Sum_probs=184.6
Q ss_pred HHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChh
Q 008493 276 LRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSF 355 (563)
Q Consensus 276 ~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~ 355 (563)
.+++...|++ .-+|.+++++|.|+|++|.|+++.|.++++.++++.+ ..++..++|++++...++. ...|.++....
T Consensus 44 ~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~-p~~g~t~~eq~ 120 (352)
T PRK07119 44 LPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGG-PGLGNIQPSQG 120 (352)
T ss_pred HHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCC-CCCCCCcchhH
Confidence 3345567888 8999999999999999999999999999999999998 7899999998887754442 22345777777
Q ss_pred hhhhhhc-----CCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC---CCCccCCCC------CCCCc-ccc
Q 008493 356 DVTFMAC-----LPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN---GIGVELPPG------NKGIP-LEV 417 (563)
Q Consensus 356 d~~~~~~-----~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~---~~~~~~p~~------~~~~~-~~~ 417 (563)
|+.+... .-+|.+++|+|+||++++...|++ +.+.|++++.+... .....+|+. +.... .+.
T Consensus 121 D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~ 200 (352)
T PRK07119 121 DYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGT 200 (352)
T ss_pred HHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCC
Confidence 7644322 234999999999999999999997 45679999875431 011111110 00000 000
Q ss_pred C-------------------------c-e-----------EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeec
Q 008493 418 G-------------------------K-G-----------RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 460 (563)
Q Consensus 418 ~-------------------------k-~-----------~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~ 460 (563)
. + . ....+++|++||++|+++..+++|++.|+++|++++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~ 280 (352)
T PRK07119 201 KGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRP 280 (352)
T ss_pred CCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEee
Confidence 0 0 0 0011367999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHH
Q 008493 461 RFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 540 (563)
Q Consensus 461 ~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~ 540 (563)
+++||||.+.|.++++++++|+|+|.+ .|.+..+|...+... .++..++. ++ |. -++++.
T Consensus 281 ~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~~------~~~~~i~k---~~--G~--------~~~~~~ 340 (352)
T PRK07119 281 ITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNGK------KPVEFYGR---MG--GM--------VPTPEE 340 (352)
T ss_pred ceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCCC------CceeEEec---cC--CE--------eCCHHH
Confidence 999999999999999999999999998 477887777555311 12222332 11 11 267999
Q ss_pred HHHHHHHHhc
Q 008493 541 IAATVFNILG 550 (563)
Q Consensus 541 I~~~i~~~~~ 550 (563)
|.+.++++++
T Consensus 341 i~~~~~~~~~ 350 (352)
T PRK07119 341 ILEKIKEILG 350 (352)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 45
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.7e-21 Score=202.14 Aligned_cols=423 Identities=18% Similarity=0.212 Sum_probs=264.1
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccc---hhHHHHHhhccc-
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAG---QAYEAMNNAGYL- 76 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G---~~~Eal~~a~~~- 76 (563)
|..|+..||+.+|..+ ++|......|-+|++++.|.|+|+-+ ++.++.|++|||+-..| +.|.+-.+..-.
T Consensus 128 ~~qFs~PgGi~SH~~p-etPGsIhEGGeLGy~l~ha~gAa~d~----Pdli~~~vvGDGeaetgplatsWhs~kf~np~~ 202 (793)
T COG3957 128 FKQFSFPGGIGSHVAP-ETPGSIHEGGELGYALSHAYGAAFDN----PDLIVACVVGDGEAETGPLATSWHSNKFLNPAR 202 (793)
T ss_pred HHhccCCCCcccccCC-CCCCccCcCcchhHHHHHHHHhhcCC----CCcEEEEEecccccccCccccccccccccCccc
Confidence 3568888999999976 56666667899999999999999865 59999999999966544 333332222222
Q ss_pred CCCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCC
Q 008493 77 DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 156 (563)
Q Consensus 77 ~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (563)
...++-|+..|| +.|..++.-+. ++ -.++
T Consensus 203 dGavLPIL~lNG-ykI~npT~lar------~s-----------------------------~~el--------------- 231 (793)
T COG3957 203 DGAVLPILHLNG-YKIENPTVLAR------IS-----------------------------DEEL--------------- 231 (793)
T ss_pred cCceeeEEEecc-eeccCceeeee------cC-----------------------------hHHH---------------
Confidence 278899999999 56644332211 10 0122
Q ss_pred CcchhhhcCceEeeccCCCCHHHHHH--------HH------H-HHhcc-CCCCc--EEEEEEecccCCcchhhh-----
Q 008493 157 GSTLFEELGLYYIGPVDGHNVDDLVA--------IL------E-EVKNT-KTTGP--VLIHVVTEKGRGYPYAEK----- 213 (563)
Q Consensus 157 ~~~~~~~~G~~~~~~~dG~d~~~l~~--------a~------~-~a~~~-~~~~P--~~I~v~t~~g~g~~~~~~----- 213 (563)
.++|+.+|+..+ .++|+|+++.-+ ++ + ++++. ...+| -+|.++|.||+..+..-.
T Consensus 232 -~~~f~G~Gy~p~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~e 309 (793)
T COG3957 232 -KALFEGYGYEPV-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLE 309 (793)
T ss_pred -HHHHhhCCCcee-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceecc
Confidence 245999999866 567878876211 11 1 23331 22344 368899999997542110
Q ss_pred ccccccCCCC-------------------------CCCC------------C-Ccc-----------CCCCc--------
Q 008493 214 AADKYHGVAK-------------------------FDPA------------T-GKQ-----------FKSSA-------- 236 (563)
Q Consensus 214 ~~~~~h~~~~-------------------------f~~~------------~-~~~-----------~~~~~-------- 236 (563)
..-+.|.++. ||-. + +++ ++.+.
T Consensus 310 g~~raHqvPl~~~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~ 389 (793)
T COG3957 310 GSWRAHQVPLKGHNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDY 389 (793)
T ss_pred ccchhccCCCCCCCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhc
Confidence 1122465541 2110 0 000 00000
Q ss_pred ---------ccccHHHHHHHHHHHHHhcCCC-EEEEecCCCCCcChHHHHH----hC-------------CCCeeecccc
Q 008493 237 ---------RTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLFLR----RF-------------PTRCFDVGIA 289 (563)
Q Consensus 237 ---------~~~~~~~a~~~~l~~~~~~~~~-v~~~~~D~~~s~~~~~~~~----~~-------------p~r~i~~gi~ 289 (563)
.+..-..++++.+.++++.|++ +.++++|-..|.++.+.-+ .+ .+|+++ .+|
T Consensus 390 ~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LS 468 (793)
T COG3957 390 AVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLS 468 (793)
T ss_pred CcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhc
Confidence 1112357899999999999887 9999999888887643211 11 378888 799
Q ss_pred hHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhcc-----------CCCCeEEEEeCCCC--CCCCCCCCCChhh
Q 008493 290 EQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDL-----------QKLPVRFAMDRAGL--VGADGPTHCGSFD 356 (563)
Q Consensus 290 E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~-----------~~~pv~~v~~~~G~--~g~~G~tH~~~~d 356 (563)
|+++.|.+.|+++.|.+.++++|-.|+.-.-.++ |+-++ ...|-......++. .+.+|.|||+..=
T Consensus 469 Eh~c~Gwlegy~LtGr~glf~sYEaF~~iv~sm~-nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf 547 (793)
T COG3957 469 EHACQGWLEGYLLTGRHGLFASYEAFAHIVDSMF-NQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGF 547 (793)
T ss_pred HHHHHHHHHHHHhcCCccceeeHHHHHHHHHHHH-hhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchH
Confidence 9999999999999999999999999983332222 33221 12222222223444 4789999998654
Q ss_pred hhhh-hcCCC-cEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCc-cCCCCCCCCccccCceEEEee---CCcEE
Q 008493 357 VTFM-ACLPN-MVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIE---GERVA 430 (563)
Q Consensus 357 ~~~~-~~~p~-~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~-~~p~~~~~~~~~~~k~~~l~~---g~dv~ 430 (563)
+..+ ...++ ++||.|.|++-+..++..|+...+.-.+|..+|++.+.. .+.+....+...++-+.+... ..|++
T Consensus 548 ~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV 627 (793)
T COG3957 548 IDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVV 627 (793)
T ss_pred HHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEE
Confidence 4433 33444 688999999999999999998666666777777763221 010000011111111122211 24899
Q ss_pred EEEechh-HHHHHHHHHHHHhCC--CceEEeecc---cccc-------CcHHHHHHHhccCCEEEE
Q 008493 431 LLGYGTA-VQSCLAASALLESNG--LRLTVADAR---FCKP-------LDHALIRSLAKSHEVLIT 483 (563)
Q Consensus 431 iv~~G~~-~~~~~~Aa~~L~~~G--i~v~vi~~~---~l~P-------f~~~~i~~~~~~~~~vvv 483 (563)
+.+.|.+ +-++++|++.|++++ ++++||++. .|+| ++...+..+.-+.++|+.
T Consensus 628 ~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 628 MACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred EEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 9999997 489999999999988 887765554 5554 233456665555566654
No 46
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.89 E-value=4.3e-21 Score=199.62 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=176.6
Q ss_pred CCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeC-CCCCCCCCCCCCChhhh
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDR-AGLVGADGPTHCGSFDV 357 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~-~G~~g~~G~tH~~~~d~ 357 (563)
....|+++- +|.+++++|.|+|++|.|+++.|.++.+.++.|++ ..++..++|++++... +|. +..-+|++++.|+
T Consensus 47 ~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~ 123 (376)
T PRK08659 47 VGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGP-STGQPTKPAQGDM 123 (376)
T ss_pred hCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHH
Confidence 335788887 99999999999999999999999999999999998 6788889998887754 443 2233566665565
Q ss_pred hhhh--cC--CCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC---CCCccCCCC-----------------C
Q 008493 358 TFMA--CL--PNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN---GIGVELPPG-----------------N 410 (563)
Q Consensus 358 ~~~~--~~--p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~---~~~~~~p~~-----------------~ 410 (563)
...+ .. -++.|+.|+|+||++++...|++ +.+.|++++.+... ...+.+|+. .
T Consensus 124 ~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 203 (376)
T PRK08659 124 MQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAY 203 (376)
T ss_pred HHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcccc
Confidence 4333 11 24789999999999999999987 45679998774321 000000100 0
Q ss_pred CCCc-----cc----cCce--------------------------------------------EE-EeeCCcEEEEEech
Q 008493 411 KGIP-----LE----VGKG--------------------------------------------RI-LIEGERVALLGYGT 436 (563)
Q Consensus 411 ~~~~-----~~----~~k~--------------------------------------------~~-l~~g~dv~iv~~G~ 436 (563)
..+. .+ .+.+ .. -.+++|++||++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs 283 (376)
T PRK08659 204 KPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGS 283 (376)
T ss_pred CCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCc
Confidence 0000 00 0100 00 01367999999999
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEee
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLV 516 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~ 516 (563)
+...+++|++.|+++|++++++++++++|||.+.|.+++++.++|+|+|+| .|.+..++...+.. ..++..+.
T Consensus 284 ~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~~~------~~~~~~i~ 356 (376)
T PRK08659 284 VARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVVNG------RAKVEGIN 356 (376)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHhCC------CCCeeEEe
Confidence 999999999999999999999999999999999999999999999999998 56666666655531 11222222
Q ss_pred cCCcccCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 008493 517 LPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 548 (563)
Q Consensus 517 ~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~ 548 (563)
. ++ |. -+++++|.+.++++
T Consensus 357 ~---~~--G~--------~~~~~ei~~~~~~~ 375 (376)
T PRK08659 357 K---IG--GE--------LITPEEILEKIKEV 375 (376)
T ss_pred c---cC--CC--------cCCHHHHHHHHHhh
Confidence 1 11 11 17889999988764
No 47
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.88 E-value=3.5e-21 Score=199.56 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=176.5
Q ss_pred CCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCC-CCCCCCCCCCCChhhhh
Q 008493 280 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRA-GLVGADGPTHCGSFDVT 358 (563)
Q Consensus 280 p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~-G~~g~~G~tH~~~~d~~ 358 (563)
...++.. =+|.+++++|.|+|++|.|.++.|.++.+.++.|++ ..++..++|++++...+ |. +..-++..++.|+.
T Consensus 47 g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~Gp-stG~p~~~~q~D~~ 123 (375)
T PRK09627 47 GGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGP-STGLPTRVAQGDVN 123 (375)
T ss_pred CCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCC-cCCCCCccchHHHH
Confidence 3445554 389999999999999999999999999999999998 68899999998877544 54 22235655655654
Q ss_pred hhh-----cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC---CCCccCCC----------------C--
Q 008493 359 FMA-----CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN---GIGVELPP----------------G-- 409 (563)
Q Consensus 359 ~~~-----~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~---~~~~~~p~----------------~-- 409 (563)
..+ .. ++.|++|+|+||++++...||+ +.+.|++++.+... .....+|+ .
T Consensus 124 ~~~~~~hgd~-~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
T PRK09627 124 QAKNPTHGDF-KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKK 202 (375)
T ss_pred HHhcCCCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcc
Confidence 444 23 3569999999999999999987 46779998774321 00010110 0
Q ss_pred -CCCCcc----c-----cCc--------------------------------------------eEEE-eeCCcEEEEEe
Q 008493 410 -NKGIPL----E-----VGK--------------------------------------------GRIL-IEGERVALLGY 434 (563)
Q Consensus 410 -~~~~~~----~-----~~k--------------------------------------------~~~l-~~g~dv~iv~~ 434 (563)
+..+.. | .+. .... .+++|++||+|
T Consensus 203 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~ 282 (375)
T PRK09627 203 DYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAY 282 (375)
T ss_pred cccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEe
Confidence 000000 0 000 0000 12578999999
Q ss_pred chhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEE
Q 008493 435 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRP 514 (563)
Q Consensus 435 G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~ 514 (563)
|+..+.+++|++.|+++|+++++++++++||||.+.+++.+++.++|+|+|.|. |+++.+|.+.+... ++..
T Consensus 283 GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~~~~-------~~~~ 354 (375)
T PRK09627 283 GSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVMQRD-------DFHF 354 (375)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHhCCC-------CceE
Confidence 999999999999999999999999999999999999999999999999999997 88888888777421 1222
Q ss_pred eecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 008493 515 LVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 548 (563)
Q Consensus 515 ~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~ 548 (563)
++. + .|. -+++++|.++++++
T Consensus 355 i~~---~--~G~--------~~~~~~i~~~i~~~ 375 (375)
T PRK09627 355 LGK---A--NGR--------PISPSEIIAKVKEL 375 (375)
T ss_pred Eee---e--CCC--------cCCHHHHHHHHHhC
Confidence 221 1 121 17889999988763
No 48
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.88 E-value=1.4e-20 Score=197.99 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=185.2
Q ss_pred CeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 361 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~ 361 (563)
.|+..- +|.+++++|.|+|++|.|+++.|.++.+.++.|.+ ..+++.++|++++...+|+.+ .-+++.+..|+...+
T Consensus 58 ~~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r 134 (407)
T PRK09622 58 EFVMVE-SEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASGMRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR 134 (407)
T ss_pred EEEeec-cHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHHhhCCEEEEEeccccCC-CcCCCchHHHHHHHh
Confidence 455543 99999999999999999999999999999999998 788999999888876666433 378888888876655
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhc---C--CCCEEEEecCCC----CCCccCCCC---------CCCCc---------
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAAI---D--DRPSCFRYPRGN----GIGVELPPG---------NKGIP--------- 414 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~~---~--~~P~~i~~~~~~----~~~~~~p~~---------~~~~~--------- 414 (563)
..+|.+++|+|+||++++...|++. . ..|++++.+... .....+++. ...+.
T Consensus 135 -~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (407)
T PRK09622 135 -DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPV 213 (407)
T ss_pred -cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCc
Confidence 4789999999999999999999983 2 689998775442 111111100 00000
Q ss_pred -ccc------------------------------------CceEE-E----eeCCcEEEEEechhHHHHHHHHHHHHhCC
Q 008493 415 -LEV------------------------------------GKGRI-L----IEGERVALLGYGTAVQSCLAASALLESNG 452 (563)
Q Consensus 415 -~~~------------------------------------~k~~~-l----~~g~dv~iv~~G~~~~~~~~Aa~~L~~~G 452 (563)
... ++.+. . .+++|++||++|+++..+++|++.|+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G 293 (407)
T PRK09622 214 TYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEG 293 (407)
T ss_pred cCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCC
Confidence 000 00000 0 13578999999999999999999999999
Q ss_pred CceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCC-CCceEEeecCCcccCCCCHHHH
Q 008493 453 LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDG-TVKWRPLVLPDRYIDHGSPADQ 530 (563)
Q Consensus 453 i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l 530 (563)
++++++++++++|||.+.+.++++++++|+|+|++. .||+|..+...+..-..... ..++ .++ ..++..|.
T Consensus 294 ~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~-v~~--~~~g~gG~---- 366 (407)
T PRK09622 294 IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPV-VSN--YIYGLGGR---- 366 (407)
T ss_pred CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCce-Eee--eEECCCCC----
Confidence 999999999999999999999999999999999997 68888765555433211100 0121 011 12222221
Q ss_pred HHHcCCCHHHHHHHHHHHhc
Q 008493 531 LAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 531 l~~~gl~~~~I~~~i~~~~~ 550 (563)
.+++++|.+.++++..
T Consensus 367 ----~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 367 ----DMTIAHLCEIFEELNE 382 (407)
T ss_pred ----CCCHHHHHHHHHHHHh
Confidence 2789999998888765
No 49
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.88 E-value=6.2e-21 Score=211.15 Aligned_cols=246 Identities=20% Similarity=0.228 Sum_probs=184.5
Q ss_pred CCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhc--cCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD--LQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~--~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
+-++....+|.+++++|.|+|++|.|+++.|.++.+.++.|+|.+ ++ ..++|++++...+. | .++++..+.|..
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~--g-p~~~~~~q~d~~ 121 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDP--S-MHSSQNEQDTRH 121 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCC--C-CccchhhHhHHH
Confidence 456677789999999999999999999999999999999999954 55 45777777654321 2 246666666655
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCC---CCccCCCC---C--CCCcccc----------
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNG---IGVELPPG---N--KGIPLEV---------- 417 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~---~~~~~p~~---~--~~~~~~~---------- 417 (563)
+.+. .++.|+.|+|++|++++..+||+ +.+.|++++.+.... ..+.+++. . ..+..+.
T Consensus 122 ~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (595)
T TIGR03336 122 YAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIA 200 (595)
T ss_pred HHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhH
Confidence 5444 68889999999999999999997 467899998854321 11111110 0 0000000
Q ss_pred ------------------Cc--e-EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc
Q 008493 418 ------------------GK--G-RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 476 (563)
Q Consensus 418 ------------------~k--~-~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~ 476 (563)
.. . .+..+++|++||++|++++.+++|++.| |++++|++++++||||++.|.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~ 277 (595)
T TIGR03336 201 RVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLS 277 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHh
Confidence 00 0 1112357999999999999999987765 9999999999999999999999999
Q ss_pred cCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 008493 477 SHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNI 548 (563)
Q Consensus 477 ~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~ 548 (563)
+++.|||+|++. +++++.+...+.+. ..+++++|++|.|.+ +..+||++.|.++++++
T Consensus 278 ~~~~vivvEe~~-~~~~~~~~~~~~~~-----~~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 278 GVEEVLVVEELE-PVVEEQVKALAGTA-----GLNIKVHGKEDGFLP--------REGELNPDIVVNALAKF 335 (595)
T ss_pred cCCeEEEEeCCc-cHHHHHHHHHHHhc-----CCCeEEecccCCccC--------cccCcCHHHHHHHHHHh
Confidence 999999999987 55555555554443 237889999999987 35789999999999886
No 50
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.87 E-value=9.4e-20 Score=189.67 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=160.3
Q ss_pred cchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcE
Q 008493 288 IAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMV 367 (563)
Q Consensus 288 i~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~ 367 (563)
=+|.+++++|.|+|++|.|+++.|.++.+.++.|++ ..+++.++|++++...++.. ..+++|.++.|+.+.+. .++.
T Consensus 56 E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~~~lPiVi~~~~R~~p-~~~~~~~~q~D~~~~~d-~g~i 132 (390)
T PRK08366 56 ESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAGARLPIVMVDVNRAMA-PPWSVWDDQTDSLAQRD-TGWM 132 (390)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHhcCCCEEEEEeccCCC-CCCCCcchhhHHHHHhh-cCEE
Confidence 489999999999999999999999999999999998 68899999998877554432 35788888888765554 6899
Q ss_pred EEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCC----CCcc----------CCCCCCCC-----ccc---------
Q 008493 368 VMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNG----IGVE----------LPPGNKGI-----PLE--------- 416 (563)
Q Consensus 368 v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~----~~~~----------~p~~~~~~-----~~~--------- 416 (563)
++.|+|+||++++...|++ +.+.|++++.+.... .... +|+....+ ..+
T Consensus 133 ~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~ 212 (390)
T PRK08366 133 QFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATP 212 (390)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCC
Confidence 9999999999999999987 467899988754311 0000 11000000 000
Q ss_pred -------------------------------cCceEE-E-e----eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEee
Q 008493 417 -------------------------------VGKGRI-L-I----EGERVALLGYGTAVQSCLAASALLESNGLRLTVAD 459 (563)
Q Consensus 417 -------------------------------~~k~~~-l-~----~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~ 459 (563)
+|+.+. + . +++|++||+||+....+++|++.|+++|+++++++
T Consensus 213 ~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~ 292 (390)
T PRK08366 213 ADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAK 292 (390)
T ss_pred cceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEE
Confidence 111111 1 1 35789999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHhccCCEEEEEeCCCC-CChHH
Q 008493 460 ARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGS 494 (563)
Q Consensus 460 ~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~-gg~g~ 494 (563)
++++||||.+.+++++++.++|+|+|.+.+ |++|.
T Consensus 293 i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~ 328 (390)
T PRK08366 293 VRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGI 328 (390)
T ss_pred EeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccH
Confidence 999999999999999999999999999975 77543
No 51
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.86 E-value=1.4e-21 Score=196.94 Aligned_cols=136 Identities=26% Similarity=0.379 Sum_probs=110.6
Q ss_pred ccC-CCCCchhhHHHHHHHHhhhhcCCCC-cEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 23 CFG-TGHSSTSISAGLGMAVGRDLKGRKN-NVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 23 ~~~-~g~~G~~l~~a~G~A~A~~~~~~~~-~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
+++ +|.+|.++|.|+|+|+|.|+++.+. .++|++|||+.++|.+||+||+|+.|++|+||+|+||+ |+|+++.....
T Consensus 131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~-yAiSvp~~~q~ 209 (358)
T COG1071 131 FLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQ-YAISVPRSRQT 209 (358)
T ss_pred cCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCC-ceeecchhhcc
Confidence 444 5999999999999999999999554 99999999999999999999999999999999999999 67653322100
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
. ...++.+ +.+||++.+ .|||+|+.++
T Consensus 210 ~------------------------------------~~~~~~r----------------a~aygipgv-~VDG~D~~av 236 (358)
T COG1071 210 A------------------------------------AEIIAAR----------------AAAYGIPGV-RVDGNDVLAV 236 (358)
T ss_pred c------------------------------------chhHHhh----------------hhccCCCeE-EECCcCHHHH
Confidence 0 0112223 778999988 5699999999
Q ss_pred HHHHHHHhcc--CCCCcEEEEEEecccCCcchhh
Q 008493 181 VAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 181 ~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
+++.++|.+. ..++|++||+.|++-.+++.++
T Consensus 237 y~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sD 270 (358)
T COG1071 237 YEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSD 270 (358)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCC
Confidence 9988877652 3678999999999999998753
No 52
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.85 E-value=3.4e-19 Score=185.99 Aligned_cols=245 Identities=16% Similarity=0.182 Sum_probs=180.8
Q ss_pred cchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcE
Q 008493 288 IAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMV 367 (563)
Q Consensus 288 i~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~ 367 (563)
=+|.+++++|.|+|++|.|+++.|.++.+.++.|++ ..+++.++|++++...+++ +....+|.+..|+...+. -+|.
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~~ 133 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGWM 133 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCeE
Confidence 489999999999999999999999999999999998 7899999999998766553 334577877777655554 5688
Q ss_pred EEecCCHHHHHHHHHHHHhcCC-----CCEEEEecCCC----CCCccCCCCC------CCC-----------c-------
Q 008493 368 VMAPSDEAELFHMVATAAAIDD-----RPSCFRYPRGN----GIGVELPPGN------KGI-----------P------- 414 (563)
Q Consensus 368 v~~P~~~~e~~~~l~~a~~~~~-----~P~~i~~~~~~----~~~~~~p~~~------~~~-----------~------- 414 (563)
++.|+|+||++++...|++..+ .|++++.+... .....+|+.. ..+ .
T Consensus 134 ~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~ 213 (394)
T PRK08367 134 QFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALA 213 (394)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCC
Confidence 9999999999999999998433 59998775531 1111111100 000 0
Q ss_pred -----c--------------------------ccCceE-EEe----eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEe
Q 008493 415 -----L--------------------------EVGKGR-ILI----EGERVALLGYGTAVQSCLAASALLESNGLRLTVA 458 (563)
Q Consensus 415 -----~--------------------------~~~k~~-~l~----~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi 458 (563)
. .+|+.+ .+. +++|++||++|+....+++|++.|+++|++++++
T Consensus 214 ~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGll 293 (394)
T PRK08367 214 FPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAA 293 (394)
T ss_pred CCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeE
Confidence 0 011111 111 3679999999999999999999999999999999
Q ss_pred eccccccCcHHHHHHHhccCCEEEEEeCCCC----CChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHc
Q 008493 459 DARFCKPLDHALIRSLAKSHEVLITVEEGSI----GGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQA 534 (563)
Q Consensus 459 ~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~----gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~ 534 (563)
++++++|||.+.+++++++.++|+|+|.+.+ |.+..+|.+.|...+ ...++..+- ++ .|..
T Consensus 294 ri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~----~g-lgg~------- 358 (394)
T PRK08367 294 KLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFI----IG-LGGR------- 358 (394)
T ss_pred EEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEE----eC-CCCC-------
Confidence 9999999999999999999999999999863 566777777764321 112222111 11 1221
Q ss_pred CCCHHHHHHHHHHHhc
Q 008493 535 GLTPSHIAATVFNILG 550 (563)
Q Consensus 535 gl~~~~I~~~i~~~~~ 550 (563)
.+++++|.+.+.++++
T Consensus 359 ~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 359 DVTFKQLDEALEIAEK 374 (394)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 2789999998888765
No 53
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.85 E-value=1.9e-22 Score=178.12 Aligned_cols=123 Identities=35% Similarity=0.599 Sum_probs=114.1
Q ss_pred CceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHH
Q 008493 418 GKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 496 (563)
Q Consensus 418 ~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v 496 (563)
||+.++++|+|++|||+|++++.|++|++.|+++|++++||++++++|||++.+.++++++++++++|++. .||+|+.+
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHH
Q 008493 497 VQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 541 (563)
Q Consensus 497 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I 541 (563)
++.+.++++.....++.++|.+|.|.++| .+++++++|+|++.|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999977643347899999999999999 999999999999987
No 54
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.84 E-value=1.5e-19 Score=198.04 Aligned_cols=219 Identities=17% Similarity=0.165 Sum_probs=168.1
Q ss_pred CCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM 360 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~ 360 (563)
+-.+...-+|.+++++|.|+|++|.|+++.|.++.+..+.|.+ ..++..++|++++...++..+..-+|+..+.|+.+.
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~ 315 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFA 315 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHH
Confidence 4566667899999999999999999999999999999999999 788889999888875443223334677777776554
Q ss_pred hcCC----CcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCC---CCccCCCC-----------------CCCC
Q 008493 361 ACLP----NMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNG---IGVELPPG-----------------NKGI 413 (563)
Q Consensus 361 ~~~p----~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~---~~~~~p~~-----------------~~~~ 413 (563)
+.-. ++.|++|+|+||++++...|++ +...|++++.+.... ..+.+|+. +..+
T Consensus 316 ~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (562)
T TIGR03710 316 LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRY 395 (562)
T ss_pred hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCC
Confidence 4321 3899999999999999999987 467899987743310 00101100 0000
Q ss_pred c--------c-ccCc---------------------------------------------eEE-EeeCCcEEEEEechhH
Q 008493 414 P--------L-EVGK---------------------------------------------GRI-LIEGERVALLGYGTAV 438 (563)
Q Consensus 414 ~--------~-~~~k---------------------------------------------~~~-l~~g~dv~iv~~G~~~ 438 (563)
. . ..+. ... -.++++++||+||++.
T Consensus 396 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~ 475 (562)
T TIGR03710 396 ELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTY 475 (562)
T ss_pred CcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCH
Confidence 0 0 0000 000 0125689999999999
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 439 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
..+++|++.|+++|+++++++++++||||.+.|++.+++.++|+|+|++.+|.+..+|...+
T Consensus 476 ~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 476 GAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998899998888777
No 55
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.82 E-value=8.1e-20 Score=187.68 Aligned_cols=131 Identities=25% Similarity=0.352 Sum_probs=105.0
Q ss_pred CCCCCchhhHHHHHHHHhhhhcC-------CCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATL 97 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~-------~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~ 97 (563)
+.|+||+++|.|+|+|+|.|+.+ ++++|+|++|||++++|.+||+|++|+.|++|++|||.||+ +++.|...
T Consensus 126 ~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~-~~i~~~~~ 204 (341)
T CHL00149 126 GFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQ-WAIGMAHH 204 (341)
T ss_pred CChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCC-eeeecchh
Confidence 35999999999999999998876 58999999999999999999999999999999999999999 45433221
Q ss_pred CCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCH
Q 008493 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNV 177 (563)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~ 177 (563)
... ...++. .++++||++.+ .+||+|.
T Consensus 205 ~~~------------------------------------~~~d~a----------------~~a~a~G~~~~-~Vdg~d~ 231 (341)
T CHL00149 205 RST------------------------------------SIPEIH----------------KKAEAFGLPGI-EVDGMDV 231 (341)
T ss_pred hee------------------------------------CCccHH----------------HHHHhCCCCEE-EEeCCCH
Confidence 100 001233 34899999988 6799999
Q ss_pred HHHHHHHH----HHhccCCCCcEEEEEEecccCCcchh
Q 008493 178 DDLVAILE----EVKNTKTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 178 ~~l~~a~~----~a~~~~~~~P~~I~v~t~~g~g~~~~ 211 (563)
.+++++++ ++++ .++|++|++.|++..|++..
T Consensus 232 ~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 232 LAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 87665554 4444 57899999999999998864
No 56
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.81 E-value=2.6e-17 Score=179.70 Aligned_cols=434 Identities=18% Similarity=0.162 Sum_probs=287.2
Q ss_pred CCCchhhHHHHHHHHhhhhc---CC---CCcEEEEEcccccc-cchhHHHHHhhcccCCC---EEEEEeCCCCcccCccc
Q 008493 27 GHSSTSISAGLGMAVGRDLK---GR---KNNVVAVIGDGAMT-AGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTAT 96 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~---~~---~~~vv~~~GDG~~~-~G~~~Eal~~a~~~~~p---li~iv~nN~~~s~~t~~ 96 (563)
+|+=.-=|..-|+..|.+.. +. ....+++-||++|. +|.++|.||++..|+.+ .|+||.||+ +...|..
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT~p 697 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTTAP 697 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-cccccCc
Confidence 44444457777888886542 11 24567899999986 89999999999999987 999999999 6766654
Q ss_pred CCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCC
Q 008493 97 LDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 176 (563)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d 176 (563)
.++....+. ..+++.++++.+ .|||+|
T Consensus 698 ~~~Rss~y~----------------------------------------------------td~ak~~~~Pif-hVNGdD 724 (1228)
T PRK12270 698 ESSRSSEYA----------------------------------------------------TDVAKMIQAPIF-HVNGDD 724 (1228)
T ss_pred cccccchhh----------------------------------------------------HHHHhhcCCCEE-eECCCC
Confidence 433322111 123677788776 779999
Q ss_pred HHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhh----ccccccCCC-------------------C--------
Q 008493 177 VDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEK----AADKYHGVA-------------------K-------- 223 (563)
Q Consensus 177 ~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~----~~~~~h~~~-------------------~-------- 223 (563)
++++..+.+.|.++ .-++|++|++.|++-+|+-..++ ++.-|+-.. .
T Consensus 725 peAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l 804 (1228)
T PRK12270 725 PEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQAL 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 99999988877763 34789999999999998822111 111110000 0
Q ss_pred ----------CC--------CC------CCcc------------------------CCC-------------------Cc
Q 008493 224 ----------FD--------PA------TGKQ------------------------FKS-------------------SA 236 (563)
Q Consensus 224 ----------f~--------~~------~~~~------------------------~~~-------------------~~ 236 (563)
|+ +. +..+ +|+ ..
T Consensus 805 ~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~ 884 (1228)
T PRK12270 805 RDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMARE 884 (1228)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhc
Confidence 00 00 0000 000 01
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh------------------HHHHHhCCCC--eeecccchHHHHHH
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL------------------NLFLRRFPTR--CFDVGIAEQHAVTF 296 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~------------------~~~~~~~p~r--~i~~gi~E~~~~~~ 296 (563)
..++|.-+-.-++..++.+...|.+.+.|-..+|-. ..|.. -..+ +.|+.++|.+++|.
T Consensus 885 g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~-~q~~f~vydS~LSEyAa~GF 963 (1228)
T PRK12270 885 GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSD-DQGKFLVYDSLLSEYAAMGF 963 (1228)
T ss_pred CCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCC-CcceEEEecchhhHHHhhcc
Confidence 233454444456777888888899999997655421 11111 1133 46999999999999
Q ss_pred HHHHhhCC--CeeEEee-chhhH---HHHHHHHHHHhc---cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhc--CCC
Q 008493 297 AAGLACEG--LKPFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC--LPN 365 (563)
Q Consensus 297 a~G~a~~G--~~~~~~~-~~~f~---~~a~dqi~~~a~---~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~--~p~ 365 (563)
-.|+|... .-++++- |++|. +-..|+++..+- .+...|+++.+|+ +- +.||-|++..--.|++. -.|
T Consensus 964 EYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHG-yE-GQGPdHSSaRiERfLqlcAe~n 1041 (1228)
T PRK12270 964 EYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHG-YE-GQGPDHSSARIERFLQLCAEGN 1041 (1228)
T ss_pred ceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCC-cC-CCCCCcchHHHHHHHHhhccCC
Confidence 99999985 5667776 88886 788999876543 3567788888874 33 36899998554445443 368
Q ss_pred cEEEecCCHHHHHHHHH-HHHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCceE-EEee-----C--CcEEEEEech
Q 008493 366 MVVMAPSDEAELFHMVA-TAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIE-----G--ERVALLGYGT 436 (563)
Q Consensus 366 ~~v~~P~~~~e~~~~l~-~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~-~l~~-----g--~dv~iv~~G~ 436 (563)
|+|..|++|...+.+|+ +|+....+|.+++.+|..+....- ...-..|.-|+.. ++.+ + -+-+|+|+|-
T Consensus 1042 m~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA--~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGK 1119 (1228)
T PRK12270 1042 MTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAA--VSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGK 1119 (1228)
T ss_pred eEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhh--cCCHHHhccCCceecCCCCCCCCccceeEEEEEcch
Confidence 99999999999999999 566667889999999986532110 0111222233332 2221 1 1567899999
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC----CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCce
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKW 512 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~----~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~ 512 (563)
..+...+.-+. ..--++.||.+-.|+|||.+.+++.+.++ +.+++.|+....|-+..++..|.+. ++...++
T Consensus 1120 vYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~--l~~~~~l 1195 (1228)
T PRK12270 1120 LYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPEL--LPDGRRL 1195 (1228)
T ss_pred hHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhh--ccCCCCc
Confidence 98877655332 23446999999999999999999888665 5778889887666667777766654 2224567
Q ss_pred EEeecCCcccC
Q 008493 513 RPLVLPDRYID 523 (563)
Q Consensus 513 ~~~~~~~~~~~ 523 (563)
++++-+..-.+
T Consensus 1196 r~VsRpasasP 1206 (1228)
T PRK12270 1196 RRVSRPASASP 1206 (1228)
T ss_pred eEecCCcccCC
Confidence 77775443333
No 57
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.81 E-value=6.5e-20 Score=185.59 Aligned_cols=137 Identities=26% Similarity=0.349 Sum_probs=110.0
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
....++++|.++|.|+|+|+|.|+.+.+..++|++|||+..+|.+||+||+|+.|++|+||||+||+ |+++|...+...
T Consensus 96 ~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~~~ 174 (300)
T PF00676_consen 96 ILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQTA 174 (300)
T ss_dssp BEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHHCS
T ss_pred eeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCcccccc
Confidence 3345699999999999999999999999999999999999999999999999999999999999999 677664432110
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
..+....++++|++.+ .+||+|+.+++
T Consensus 175 ----------------------------------------------------~~~~~~~a~~~gip~~-~VDG~D~~av~ 201 (300)
T PF00676_consen 175 ----------------------------------------------------SPDIADRAKGYGIPGI-RVDGNDVEAVY 201 (300)
T ss_dssp ----------------------------------------------------SSTSGGGGGGTTSEEE-EEETTSHHHHH
T ss_pred ----------------------------------------------------ccchhhhhhccCCcEE-EECCEeHHHHH
Confidence 1123345889999988 78999999999
Q ss_pred HHHHHHhcc--CCCCcEEEEEEecccCCcchhh
Q 008493 182 AILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 182 ~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
+++++|.+. ..++|++|++.|++-.|++..+
T Consensus 202 ~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 202 EAAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 888877652 3679999999999999987654
No 58
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.80 E-value=2.2e-19 Score=183.10 Aligned_cols=133 Identities=24% Similarity=0.341 Sum_probs=109.4
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|.|+|+|+|.++.+++++|||++|||++++|.+||+|++|+.+++|++|||.||+ +++.|+.+...
T Consensus 108 ~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~~---- 182 (315)
T TIGR03182 108 GHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERSS---- 182 (315)
T ss_pred CcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHHh----
Confidence 4599999999999999999999999999999999999999999999999999999999999998 66644321100
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
-.+++..++++||++.+ .+||+|+.++.+++
T Consensus 183 ------------------------------------------------~~~~~a~~A~a~G~~~~-~Vdg~d~~av~~a~ 213 (315)
T TIGR03182 183 ------------------------------------------------SVTDLYKRGESFGIPGE-RVDGMDVLAVREAA 213 (315)
T ss_pred ------------------------------------------------CCcCHHHHHHhCCCCEE-EECCCCHHHHHHHH
Confidence 01123345899999987 68999999888887
Q ss_pred HHHhcc--CCCCcEEEEEEecccCCcchh
Q 008493 185 EEVKNT--KTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 185 ~~a~~~--~~~~P~~I~v~t~~g~g~~~~ 211 (563)
++|.+. ..++|++|++.|++..|+...
T Consensus 214 ~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 214 KEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 766531 357899999999999998754
No 59
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.80 E-value=4.1e-19 Score=179.92 Aligned_cols=136 Identities=25% Similarity=0.285 Sum_probs=110.9
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
....++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+|++|+.+++|++|||+||+ +++.+......
T Consensus 98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~~ 176 (293)
T cd02000 98 NFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQT 176 (293)
T ss_pred CccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHHh
Confidence 33456799999999999999999999999999999999999999999999999999999999999998 66543221100
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
. .+++..+++++|++.. .+||+|++++
T Consensus 177 ------------------------------------~----------------~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 177 ------------------------------------A----------------GTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred ------------------------------------C----------------CccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 0 1122345899999987 7799999998
Q ss_pred HHHHHHHhcc--CCCCcEEEEEEecccCCcch
Q 008493 181 VAILEEVKNT--KTTGPVLIHVVTEKGRGYPY 210 (563)
Q Consensus 181 ~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~ 210 (563)
.+++++|.+. ..++|++|++.|.+..|++.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 8888776631 25789999999999999874
No 60
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.79 E-value=5.1e-19 Score=185.64 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=104.2
Q ss_pred CCCCchhhHHHHHHHHhhhhcC-------CCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC
Q 008493 26 TGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~-------~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~ 98 (563)
.|++|+++|.|+|+|+|.|+.+ ++++||||+|||++++|.+||+||+|+.|++|++|||+||+ +++.+....
T Consensus 193 ~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~-yaig~~~~~ 271 (433)
T PLN02374 193 FAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR 271 (433)
T ss_pred ceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCC-Eeecceeee
Confidence 5899999999999999998875 47899999999999999999999999999999999999999 444332211
Q ss_pred CCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHH
Q 008493 99 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 178 (563)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~ 178 (563)
... ..++. ..+++||++.+ .+||+|+.
T Consensus 272 ~t~------------------------------------~~dia----------------~~A~a~G~~~~-~VDG~D~~ 298 (433)
T PLN02374 272 ATS------------------------------------DPEIW----------------KKGPAFGMPGV-HVDGMDVL 298 (433)
T ss_pred ccC------------------------------------CCCHH----------------HHHHhcCCcEE-EECCCCHH
Confidence 000 01222 23889999988 68999999
Q ss_pred HHHHHHH----HHhccCCCCcEEEEEEecccCCcchh
Q 008493 179 DLVAILE----EVKNTKTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 179 ~l~~a~~----~a~~~~~~~P~~I~v~t~~g~g~~~~ 211 (563)
+++++++ ++++ .++|++|++.|++.+|++..
T Consensus 299 av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 299 KVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 8775554 4444 57899999999999999764
No 61
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.79 E-value=5e-19 Score=182.27 Aligned_cols=131 Identities=23% Similarity=0.311 Sum_probs=105.4
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
++++|.++|.|+|+|+|.|+.+.++.++|++|||++++|.+||+||+|+.|++|++|||+||+ ++++|...... +
T Consensus 137 ~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~~~-~--- 211 (362)
T PLN02269 137 HGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWRAA-K--- 211 (362)
T ss_pred CchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhhhc-c---
Confidence 599999999999999999999999999999999999999999999999999999999999999 67655321100 0
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 185 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~ 185 (563)
...+. .++++++.+ .+||+|+.++.++++
T Consensus 212 --------------------------------~~~~~------------------~~~~~~p~~-~VDG~D~~av~~a~~ 240 (362)
T PLN02269 212 --------------------------------SPAYY------------------KRGDYVPGL-KVDGMDVLAVKQACK 240 (362)
T ss_pred --------------------------------chHHH------------------HhhcCCCeE-EECCCCHHHHHHHHH
Confidence 01111 123455555 679999999999998
Q ss_pred HHhcc-CCCCcEEEEEEecccCCcchhh
Q 008493 186 EVKNT-KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 186 ~a~~~-~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
.|.+. +.++|++|++.|++..|++..+
T Consensus 241 ~A~~~aR~~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 241 FAKEHALSNGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred HHHHHHHhCCCEEEEEecCcCCCcCCCC
Confidence 87652 1278999999999999987543
No 62
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.77 E-value=1.6e-18 Score=178.55 Aligned_cols=138 Identities=23% Similarity=0.313 Sum_probs=108.1
Q ss_pred CcccC-CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCC
Q 008493 21 YDCFG-TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDG 99 (563)
Q Consensus 21 ~~~~~-~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~ 99 (563)
+..+| ++++|.++|.|+|+|+|.|+.+++++|+|++|||++++|.++|+|++|+.|++|++|||.||+ +.+.|.....
T Consensus 115 ~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~~~~ 193 (341)
T TIGR03181 115 VNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPRSKQ 193 (341)
T ss_pred cCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccchhhh
Confidence 44445 488999999999999999999999999999999999999999999999999999999999998 5543321100
Q ss_pred CCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHH
Q 008493 100 PIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDD 179 (563)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~ 179 (563)
...+++..++++||++++ .+||+|..+
T Consensus 194 ----------------------------------------------------~~~~d~~~~a~a~G~~~~-~Vdg~d~~a 220 (341)
T TIGR03181 194 ----------------------------------------------------TAAPTLAQKAIAYGIPGV-QVDGNDVLA 220 (341)
T ss_pred ----------------------------------------------------hCCcCHHHHHhhCCCCEE-EECCCCHHH
Confidence 001223345899999988 679999977
Q ss_pred HHHHHHHHhcc--CCCCcEEEEEEecccCCcchhh
Q 008493 180 LVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 180 l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
+.++++.|.+. ..++|++|++.|++..|++..+
T Consensus 221 v~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 221 VYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTAD 255 (341)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCC
Confidence 66655544321 2578999999999999887643
No 63
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.74 E-value=3.1e-18 Score=167.56 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=108.0
Q ss_pred CCCCchhhHHHHHHHHhhhhcC-----CCCcEEEEEccccc-ccchhHHHHHhhcccCCC---EEEEEeCCCCcccCccc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTAT 96 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~-----~~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~p---li~iv~nN~~~s~~t~~ 96 (563)
.+++|...|.|+|+|+|.++.+ .+..+||++|||++ .+|.+||+||+|+.|++| +|+||+||+ ++++|..
T Consensus 112 pS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq-~g~sT~~ 190 (265)
T cd02016 112 PSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ-IGFTTDP 190 (265)
T ss_pred CcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEEecH
Confidence 4889999999999999999987 36788999999997 599999999999999998 999999999 6776644
Q ss_pred CCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCC
Q 008493 97 LDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 176 (563)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d 176 (563)
.+.... ..+. .+++++|++.+ .+||+|
T Consensus 191 ~~~~~~------------------------------------~~~~----------------~~a~~~gip~~-~VdG~D 217 (265)
T cd02016 191 RDSRSS------------------------------------PYCT----------------DVAKMIGAPIF-HVNGDD 217 (265)
T ss_pred HHhccc------------------------------------ccHH----------------HHHeecCCCEE-EEcCCC
Confidence 321110 1122 23889999987 789999
Q ss_pred HHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchh
Q 008493 177 VDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 177 ~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~ 211 (563)
++++.++.++|.+. +.++|++|++.|++-+|+...
T Consensus 218 ~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 218 PEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 99999988877652 357899999999999998753
No 64
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.70 E-value=1e-16 Score=153.01 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=109.7
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchh---HHHHHhhcccC-CCEEE
Q 008493 7 TDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA---YEAMNNAGYLD-SDMIV 82 (563)
Q Consensus 7 ~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~---~Eal~~a~~~~-~pli~ 82 (563)
.||+++|+.+ +.+.....+|++|++++.|+|+|+. +++.+|+|++|||++++|.+ |++..++...+ .+|+.
T Consensus 43 ~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~d----~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLp 117 (227)
T cd02011 43 PGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLP 117 (227)
T ss_pred CCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhhc----CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEE
Confidence 4678888876 6788888999999999999999863 46889999999999999995 89888888777 88999
Q ss_pred EEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhh
Q 008493 83 ILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFE 162 (563)
Q Consensus 83 iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (563)
||+||+ +++++.+..... +.+++.++ ++
T Consensus 118 Ild~Ng-~~i~~pt~~~~~-----------------------------------~~e~l~~~----------------~~ 145 (227)
T cd02011 118 ILHLNG-YKISNPTILARI-----------------------------------SHEELEAL----------------FR 145 (227)
T ss_pred EEEcCC-CcccCCcccccc-----------------------------------CchhHHHH----------------HH
Confidence 999999 676554432100 01345544 99
Q ss_pred hcCceEeeccCCCCHHHHHHHHHHH---------------hcc-CCCCc--EEEEEEecccCCcc
Q 008493 163 ELGLYYIGPVDGHNVDDLVAILEEV---------------KNT-KTTGP--VLIHVVTEKGRGYP 209 (563)
Q Consensus 163 ~~G~~~~~~~dG~d~~~l~~a~~~a---------------~~~-~~~~P--~~I~v~t~~g~g~~ 209 (563)
+|||+.+ .+||+|++++.++++++ ++. ...+| -+|.++|.||+.-+
T Consensus 146 ~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 146 GYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred hCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 9999988 57999998866665422 210 12345 38899999999654
No 65
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.70 E-value=3.9e-17 Score=158.68 Aligned_cols=134 Identities=24% Similarity=0.369 Sum_probs=106.6
Q ss_pred ccC-CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 23 CFG-TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 23 ~~~-~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
+|| .|++|.++|.+.|+|+|.|+.+++..++++.|||+.++|..+||+|.|+.|++|+||||+||. |.+.|...
T Consensus 160 FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~-yGMGTs~~---- 234 (394)
T KOG0225|consen 160 FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNH-YGMGTSAE---- 234 (394)
T ss_pred ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCC-CccCcchh----
Confidence 444 699999999999999999999999999999999999999999999999999999999999999 45544321
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
|..+.+ ++.++ . ++ ++.+ .|||.|+-.+.
T Consensus 235 -----------Rasa~t---------------------eyykR----------------G-~y-iPGl-~VdGmdvlaVr 263 (394)
T KOG0225|consen 235 -----------RASAST---------------------EYYKR----------------G-DY-IPGL-KVDGMDVLAVR 263 (394)
T ss_pred -----------hhhcCh---------------------HHHhc----------------c-CC-CCce-EECCcchhhHH
Confidence 111111 11111 1 11 3444 57999999999
Q ss_pred HHHHHHhcc--CCCCcEEEEEEecccCCcchhh
Q 008493 182 AILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 182 ~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
+|.+.|++. +.++|.++++.|++-.|++-++
T Consensus 264 ~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 264 EATKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 999988863 4589999999999999987544
No 66
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.66 E-value=2.1e-16 Score=147.77 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=94.7
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+++ +..+++++|+++++|+++||.||+.+++....+.
T Consensus 44 ~~~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~---- 113 (172)
T cd02004 44 AGTFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ---- 113 (172)
T ss_pred CCCCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhhh----
Confidence 3356999999999999999975 89999999999999 5568899999999999999999875443211110
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
......+ ....++..+++..++++||+++.++ ++.+++.+
T Consensus 114 -----------~~~~~~~--------------------------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 153 (172)
T cd02004 114 -----------LSYGLGL--------------------------PVTTLLPDTRYDLVAEAFGGKGELV---TTPEELKP 153 (172)
T ss_pred -----------hhccCCC--------------------------ceeccCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 0000000 0001111245667799999998866 67999999
Q ss_pred HHHHHhccCCCCcEEEEEEe
Q 008493 183 ILEEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t 202 (563)
+++++.+ .++|++|++++
T Consensus 154 al~~a~~--~~~p~liev~i 171 (172)
T cd02004 154 ALKRALA--SGKPALINVII 171 (172)
T ss_pred HHHHHHH--cCCCEEEEEEc
Confidence 9999987 58999999986
No 67
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.66 E-value=1.8e-14 Score=152.32 Aligned_cols=249 Identities=21% Similarity=0.248 Sum_probs=178.4
Q ss_pred CCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCC---eEEEEeCCCCCCCCCCCCCChhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGSFDV 357 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~p---v~~v~~~~G~~g~~G~tH~~~~d~ 357 (563)
+-|++++.+|.-++.+|+|+++.|.|.++.+-...++++.|.++ .+++.... |++++++.|.. .....|+.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~-s~ay~Gv~GGlviv~aDDpg~~--SSqneqds--- 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLM-SLAYAGVTGGLVIVVADDPGMH--SSQNEQDS--- 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhh-hhhhcCccccEEEEEccCCCcc--cccchhHh---
Confidence 78999999999999999999999999999999999999999995 56666544 55666666641 12223333
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCCCC---ccC-----CC-CCC--CCccccCce---
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNGIG---VEL-----PP-GNK--GIPLEVGKG--- 420 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~~~---~~~-----p~-~~~--~~~~~~~k~--- 420 (563)
.++..+..+-|+.|+|+||++++++++|+ ....|+++|........ +.+ |. ..+ .+..+.++.
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 34444566679999999999999999997 45679999874432110 000 00 001 111111111
Q ss_pred ----------------------------EEEeeC--CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHH
Q 008493 421 ----------------------------RILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 470 (563)
Q Consensus 421 ----------------------------~~l~~g--~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~ 470 (563)
..+..+ .++.||+.|.....+++|.+.| |++..++.+.+.+|||.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHH
Confidence 000013 6899999999999999997655 8999999999999999999
Q ss_pred HHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 471 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 471 i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
|.++++.-++|+||||... =+-.++...+.+++ .++...|..+.+.+- ...+|++.|..+|.+++.
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g-----~~v~v~GKd~gllP~--------~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAG-----LPVEVHGKDEGLLPM--------EGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcC-----CceEeecccccccCc--------ccccCHHHHHHHHHHHhC
Confidence 9999999999999999864 36666777776654 233334444343331 345999999999999987
Q ss_pred cc
Q 008493 551 QT 552 (563)
Q Consensus 551 ~~ 552 (563)
+.
T Consensus 355 ~~ 356 (640)
T COG4231 355 KE 356 (640)
T ss_pred cc
Confidence 74
No 68
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.65 E-value=6.2e-16 Score=147.56 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=98.7
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|+++++|+++||.||+.+.
T Consensus 49 ~~~~g~mG~~lpaaiGa~la~p----~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg----------- 111 (196)
T cd02013 49 PLSFGNCGYALPAIIGAKAAAP----DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWG----------- 111 (196)
T ss_pred CCCCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhH-----------
Confidence 3456999999999999999865 89999999999999 556789999999999999999998532
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+. +.+....+..+. ..++-.+|+..++++||+++.++ ++.++|.+
T Consensus 112 ---~~~-~~q~~~~~~~~~---------------------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 157 (196)
T cd02013 112 ---AEK-KNQVDFYNNRFV---------------------------GTELESESFAKIAEACGAKGITV---DKPEDVGP 157 (196)
T ss_pred ---HHH-HHHHHHcCCCcc---------------------------cccCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 211 111100000000 01111356778899999998866 78999999
Q ss_pred HHHHHhcc-CCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNT-KTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~-~~~~P~~I~v~t~~g~g 207 (563)
+++++.+. +.++|++|++.+.+..+
T Consensus 158 al~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 158 ALQKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHHHhcCCCCCeEEEEEEeCcccC
Confidence 99998751 24789999999976664
No 69
>PRK06163 hypothetical protein; Provisional
Probab=99.65 E-value=6e-16 Score=147.36 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=96.1
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhccc-CCCEEEEEeCCCCcccCcccCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~-~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
.+..|+||+++|+|+|+++|.+ +++|||++|||+|+ |..++|.+++.+ ++|+++||.||+.+.+.. .+.
T Consensus 53 ~~~~GsMG~glpaAiGaalA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~-~~~--- 122 (202)
T PRK06163 53 FYMLGSMGLAFPIALGVALAQP----KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITG-GQP--- 122 (202)
T ss_pred eEeecccccHHHHHHHHHHhCC----CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcC-Ccc---
Confidence 3467999999999999999975 89999999999999 666889999877 589999999997543210 000
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCce-EeeccCCCCHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNVDDL 180 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~dG~d~~~l 180 (563)
.. ..-.+|+.+++++||++ ...+ .+.++|
T Consensus 123 --~~---------------------------------------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el 152 (202)
T PRK06163 123 --TL---------------------------------------------TSQTVDVVAIARGAGLENSHWA---ADEAHF 152 (202)
T ss_pred --CC---------------------------------------------CCCCCCHHHHHHHCCCceEEEe---CCHHHH
Confidence 00 00013556779999997 4445 789999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccCCcc
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGRGYP 209 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~g~~ 209 (563)
.++++++.+ .++|++|++++......+
T Consensus 153 ~~al~~a~~--~~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 153 EALVDQALS--GPGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHHHHh--CCCCEEEEEEecCCCCCC
Confidence 999999987 689999999998665433
No 70
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.63 E-value=1.6e-15 Score=143.38 Aligned_cols=125 Identities=24% Similarity=0.320 Sum_probs=95.9
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCC-CEEEEEeCCCCcccCcccCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDG 99 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~-pli~iv~nN~~~s~~t~~~~~ 99 (563)
...+..|+||+++|+|+|+++|.+ +++|||++|||+|+ +..++|.+++++++ |+++||.||+.+.+... +.
T Consensus 42 ~~~~~~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~-~~- 113 (188)
T cd03371 42 QDFLTVGSMGHASQIALGIALARP----DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSVGG-QP- 113 (188)
T ss_pred CceeecCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhccCC-cC-
Confidence 334556999999999999999975 88999999999999 56688999999985 79999999985443100 00
Q ss_pred CCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHH
Q 008493 100 PIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDD 179 (563)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~ 179 (563)
.. ...+++..+++++|+.+...+ ++.++
T Consensus 114 ---~~-----------------------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~e 141 (188)
T cd03371 114 ---TV-----------------------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEE 141 (188)
T ss_pred ---CC-----------------------------------------------CCCCCHHHHHHHcCCceEEec--CCHHH
Confidence 00 001344567999999864223 58999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 180 LVAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 180 l~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
|.++++++.+ .++|++|++++.++.+
T Consensus 142 l~~al~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 142 LVAALAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHHHHh--CCCCEEEEEEecCCCC
Confidence 9999999986 6789999999988776
No 71
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.63 E-value=6.2e-14 Score=164.22 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=177.6
Q ss_pred CeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 361 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~ 361 (563)
.|++. =+|.++++++.|++++|.|.++.|.++.+..+.+.+ ..++..++|++++...+++.+.....+.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l-~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNM-YKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHH-HHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 35544 589999999999999999999999999888888888 4566679999888765543333345566666665555
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC----CCCccCCCC----------C-CCCc---------
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN----GIGVELPPG----------N-KGIP--------- 414 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~----~~~~~~p~~----------~-~~~~--------- 414 (563)
. -|+.++.|+++||+.++...|++ +.+.|++++.+-.. ..+..+++. . ..+.
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 5 68999999999999999999876 45789887665321 111111100 0 0000
Q ss_pred c--------------------------------------ccCce-----EEEeeCCcEEEEEechhHHHHHHHHHHHHhC
Q 008493 415 L--------------------------------------EVGKG-----RILIEGERVALLGYGTAVQSCLAASALLESN 451 (563)
Q Consensus 415 ~--------------------------------------~~~k~-----~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~ 451 (563)
. -.|+. +.-.++++++||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 0 00111 1112467999999999999999999999999
Q ss_pred CCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCC-C----ChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCC
Q 008493 452 GLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSI-G----GFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 525 (563)
Q Consensus 452 Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~-g----g~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 525 (563)
|++|++|+++++||||.+.+.+.+ ++.++|+|+|.+.. | .+..+|.+.+...+ . ..+. .++ .+|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~~-v~~--~~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMPV-ILG--GRYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCCE-EEE--EEECCCC
Confidence 999999999999999999999877 68899999999852 2 47777777775431 0 1121 122 1233222
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 526 SPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 526 ~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
. .++++.|.+.++++...
T Consensus 364 ~--------~~tp~~i~~i~~~l~~~ 381 (1165)
T TIGR02176 364 K--------EFTPAMVKAVFDNLSGE 381 (1165)
T ss_pred C--------CCCHHHHHHHHHHHhcc
Confidence 1 27889999888887544
No 72
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.63 E-value=1.6e-15 Score=145.57 Aligned_cols=143 Identities=21% Similarity=0.242 Sum_probs=99.2
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+
T Consensus 53 ~~~~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y------------ 114 (202)
T cd02006 53 CGQAGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL------------ 114 (202)
T ss_pred cCCccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH------------
Confidence 3456999999999999999975 89999999999999 66688999999999999999999853
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+ ++.++......+... .+ .... ......-.+|+..++++||+++.++ ++.++|.+
T Consensus 115 --g~~-~~~q~~~~~~~~~~~-----~~--------~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 171 (202)
T cd02006 115 --GLI-RQAQRAFDMDYQVNL-----AF--------ENIN----SSELGGYGVDHVKVAEGLGCKAIRV---TKPEELAA 171 (202)
T ss_pred --HHH-HHHHHHhcCcccccc-----cc--------cccc----ccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 222 111111100000000 00 0000 0000001257788899999998877 78999999
Q ss_pred HHHHHhcc--CCCCcEEEEEEecccC
Q 008493 183 ILEEVKNT--KTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~--~~~~P~~I~v~t~~g~ 206 (563)
+++++.+. ..++|++|++++.+..
T Consensus 172 al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 172 AFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHHHhcccCCCcEEEEEEecccc
Confidence 99998741 1478999999987654
No 73
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.63 E-value=1.5e-15 Score=143.93 Aligned_cols=131 Identities=19% Similarity=0.286 Sum_probs=96.9
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +..++|.+|+++++|+++||.||+.+.
T Consensus 47 ~~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------ 108 (186)
T cd02015 47 GGLGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------ 108 (186)
T ss_pred CCccchhchHHHHHHHHHhCC----CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH------------
Confidence 345999999999999999975 89999999999999 566789999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+. ..++......+.. ......+|+..+++++|+++.++ ++.++|.++
T Consensus 109 --~~~-~~~~~~~~~~~~~--------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 156 (186)
T cd02015 109 --MVR-QWQELFYEGRYSH--------------------------TTLDSNPDFVKLAEAYGIKGLRV---EKPEELEAA 156 (186)
T ss_pred --HHH-HHHHHHcCCceee--------------------------ccCCCCCCHHHHHHHCCCceEEe---CCHHHHHHH
Confidence 221 1111000000000 00001246677899999998866 679999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|++.+.+..
T Consensus 157 l~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 157 LKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHh--CCCCEEEEEEeCCCc
Confidence 999987 688999999997543
No 74
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.63 E-value=1.1e-15 Score=142.12 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=95.6
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
....+.|+||+++|.|+|+++|.+ +++|||++|||++++ .++++++|..+++|+++||.||+.+.+
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~-------- 105 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT-------- 105 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH--------
Confidence 444577999999999999999976 899999999999995 679999999999999999999985332
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
.. ..+....... ......-.+++..+++++|+++..+ ++++++
T Consensus 106 ------~~-~~~~~~~~~~---------------------------~~~~~~~~~d~~~~a~~~G~~~~~v---~~~~~l 148 (168)
T cd00568 106 ------IR-MHQEAFYGGR---------------------------VSGTDLSNPDFAALAEAYGAKGVRV---EDPEDL 148 (168)
T ss_pred ------HH-HHHHHHcCCC---------------------------cccccCCCCCHHHHHHHCCCeEEEE---CCHHHH
Confidence 10 0000000000 0000111235566799999998865 679999
Q ss_pred HHHHHHHhccCCCCcEEEEEEe
Q 008493 181 VAILEEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t 202 (563)
.++++++.+ .++|++|+++|
T Consensus 149 ~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 149 EAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred HHHHHHHHh--CCCCEEEEEEC
Confidence 999999986 68999999986
No 75
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.63 E-value=1.5e-15 Score=139.47 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=92.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CCEEEEEeCCCCcccCcccCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
+..|+||+++|.|+|+++|. +++|||++|||+|+ |..+++.+++.++ +|+++||.||+.+.+.. .+....
T Consensus 39 ~~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~-~~~~~~- 109 (157)
T cd02001 39 YMLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTG-GQPTPS- 109 (157)
T ss_pred EeecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccccC-CcCCCC-
Confidence 45899999999999999985 28899999999998 5557799999884 99999999997544211 000000
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
..+|+..++++||+++..+ ++++++.+
T Consensus 110 --------------------------------------------------~~~d~~~lA~a~G~~~~~v---~~~~el~~ 136 (157)
T cd02001 110 --------------------------------------------------SNVNLEAWAAACGYLVLSA---PLLGGLGS 136 (157)
T ss_pred --------------------------------------------------CCCCHHHHHHHCCCceEEc---CCHHHHHH
Confidence 0134566799999998766 78999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++++.+ .++|++|++++.++
T Consensus 137 al~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 137 EFAGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHHh--CCCCEEEEEEecCC
Confidence 9999987 68999999998764
No 76
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.63 E-value=5.8e-14 Score=145.52 Aligned_cols=216 Identities=14% Similarity=0.153 Sum_probs=154.0
Q ss_pred CCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
....|++. =+|.++++++.|++++|.|.+++|.++.+..+.+.+ ..++++++|++++...+++..+.-+++....|+.
T Consensus 46 ~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~ 123 (365)
T COG0674 46 VGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLM 123 (365)
T ss_pred cCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcCCCcccccccHHHHH
Confidence 33455554 679999999999999999999999999988888988 7899999999988866654444456999999987
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCCC----CccCCCC---------CCCC-------cc
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNGI----GVELPPG---------NKGI-------PL 415 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~~----~~~~p~~---------~~~~-------~~ 415 (563)
..+. .++.+++-+|.||+.++...|++ +...|+++.++..... +..++.. +..+ +.
T Consensus 124 ~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (365)
T COG0674 124 AARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPV 202 (365)
T ss_pred HHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCC
Confidence 7776 58888888899999999999987 3467988765332110 0000000 0000 00
Q ss_pred ccC--------------------------------------ce----EEEe-eCCcEEEEEechhHHHHHHHHHH-HHhC
Q 008493 416 EVG--------------------------------------KG----RILI-EGERVALLGYGTAVQSCLAASAL-LESN 451 (563)
Q Consensus 416 ~~~--------------------------------------k~----~~l~-~g~dv~iv~~G~~~~~~~~Aa~~-L~~~ 451 (563)
..| +. .+.. ++++++||+||+....+.+++.. ++++
T Consensus 203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~ 282 (365)
T COG0674 203 LPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDK 282 (365)
T ss_pred cCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhc
Confidence 000 00 0000 46789999999888878777665 5588
Q ss_pred CCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHH
Q 008493 452 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVV 497 (563)
Q Consensus 452 Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~ 497 (563)
|++++++.+++++|||.+.+++++++.+.+.|++-.. .|++++-+.
T Consensus 283 g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~l~ 329 (365)
T COG0674 283 GEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEPLY 329 (365)
T ss_pred CceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhhHH
Confidence 9999999999999999999999998877444444433 355443333
No 77
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.62 E-value=2.1e-15 Score=141.52 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=98.3
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
....+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+.
T Consensus 42 ~~~~~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g--------- 106 (177)
T cd02010 42 LISNGLATMGVALPGAIGAKLVYP----DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYG--------- 106 (177)
T ss_pred EeCCCChhhhhHHHHHHHHHHhCC----CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcch---------
Confidence 344567999999999999999965 89999999999998 566889999999999999999998532
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
.+ ++.++.... .+ ...++-.+|+.++++++|+++..+ .+.+++
T Consensus 107 -----~~-~~~~~~~~~-~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el 149 (177)
T cd02010 107 -----LI-KWKQEKEYG-RD---------------------------SGVDFGNPDFVKYAESFGAKGYRI---ESADDL 149 (177)
T ss_pred -----HH-HHHHHHhcC-Cc---------------------------ccCcCCCCCHHHHHHHCCCEEEEE---CCHHHH
Confidence 22 111110000 00 001111246677899999998766 789999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecc
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~ 204 (563)
.++++++.+ .++|++|++.+..
T Consensus 150 ~~al~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 150 LPVLERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHHHHh--CCCCEEEEEEecc
Confidence 999999987 6899999999864
No 78
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.62 E-value=2e-15 Score=145.10 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=99.6
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|++ ...+|.+|+++++|+++||.||+.+.
T Consensus 44 ~~~~gsmG~~lpaAiGa~la~p----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g----------- 106 (205)
T cd02003 44 EYGYSCMGYEIAAGLGAKLAKP----DREVYVLVGDGSYLM--LHSEIVTAVQEGLKIIIVLFDNHGFG----------- 106 (205)
T ss_pred CCCcchhhhHHHHHHHHHHhCC----CCeEEEEEccchhhc--cHHHHHHHHHcCCCCEEEEEECCccH-----------
Confidence 3467999999999999999865 899999999999995 44689999999999999999998532
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHH--HHh-ccccCCCcchhhhcCceEeeccCCCCHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE--YAR-GMISGSGSTLFEELGLYYIGPVDGHNVDD 179 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~G~~~~~~~dG~d~~~ 179 (563)
.+. .++.....+.+.. +...+... ... +...+|+..++++||+++.++ +++++
T Consensus 107 ---~~~-~~q~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~e 162 (205)
T cd02003 107 ---CIN-NLQESTGSGSFGT-----------------EFRDRDQESGQLDGALLPVDFAANARSLGARVEKV---KTIEE 162 (205)
T ss_pred ---HHH-HHHHHhcCccccc-----------------hhcccccccccccCCCCCCCHHHHHHhCCCEEEEE---CCHHH
Confidence 221 1111100000000 00000000 000 011356778899999998866 79999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 180 LVAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 180 l~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
|.++++++.+ .++|++|++.+.+...
T Consensus 163 l~~al~~a~~--~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 163 LKAALAKAKA--SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHHHHh--CCCCEEEEEEeecccc
Confidence 9999999986 6899999999987654
No 79
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.62 E-value=2.4e-15 Score=141.36 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=96.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchh-HHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~-~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
+.|+||+++|+|+|+++|.+ +++||+++|||++++ . ++++.+|+++++|+++||.||+.+.+... +......
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~--~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~-~~~~~~~ 121 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFH--SGILGLINAVYNKANITVVILDNRTTAMTGG-QPHPGTG 121 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhh--ccHHHHHHHHHcCCCEEEEEECCcceeccCC-CCCCCCc
Confidence 57999999999999999976 899999999999983 3 68899999999999999999985443211 1100000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+. .....-.+|+..+++++|+++.++.++++++++.++
T Consensus 122 ----------------~~--------------------------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 122 ----------------KT--------------------------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred ----------------cc--------------------------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 00 000001135567799999999877788999999899
Q ss_pred HHHHhccCCCCcEEEEEEec
Q 008493 184 LEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~ 203 (563)
++++.+ .++|++|++++.
T Consensus 160 l~~a~~--~~gp~lI~v~~~ 177 (178)
T cd02008 160 LKEALA--VPGVSVIIAKRP 177 (178)
T ss_pred HHHHHh--CCCCEEEEEeCC
Confidence 999986 689999999864
No 80
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.8e-14 Score=147.84 Aligned_cols=437 Identities=17% Similarity=0.186 Sum_probs=274.3
Q ss_pred CccCCCCCCCCCCCCC----------CCcccCC------------CCCchhhHHHHHHHHhhhhc------CC-------
Q 008493 4 MRQTDGLSGFTKRSES----------EYDCFGT------------GHSSTSISAGLGMAVGRDLK------GR------- 48 (563)
Q Consensus 4 ~r~~~g~~g~~~~~~~----------~~~~~~~------------g~~G~~l~~a~G~A~A~~~~------~~------- 48 (563)
||+..|++-||+..+- +.+-+|. +|+-..-|.|+|-+.+..-. ++
T Consensus 238 FRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~G 317 (913)
T KOG0451|consen 238 FRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFG 317 (913)
T ss_pred HHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCC
Confidence 7888888888875221 1111221 34444567788877664321 11
Q ss_pred -CCcEEEEEcccccc-cchhHHHHHhhcc--cC-CCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHH
Q 008493 49 -KNNVVAVIGDGAMT-AGQAYEAMNNAGY--LD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLREL 123 (563)
Q Consensus 49 -~~~vv~~~GDG~~~-~G~~~Eal~~a~~--~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 123 (563)
....+.+-||++|. +|.++|+++.+-. .+ .--+.+|.||+ +..+|....|....+.
T Consensus 318 d~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQ-vgfTtp~~rGRSs~yc------------------ 378 (913)
T KOG0451|consen 318 DHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQ-VGFTTPGDRGRSSAYC------------------ 378 (913)
T ss_pred CceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccc-ccccCcccccccchhh------------------
Confidence 22446678999998 7999999998753 33 45566666887 5555544333322111
Q ss_pred HHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhcc--CCCCcEEEEEE
Q 008493 124 REVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVV 201 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~--~~~~P~~I~v~ 201 (563)
.+++++++++++ .++|.|++++.+|-+-|.+. +-++-++|.+.
T Consensus 379 ----------------------------------sDiaK~~~~pvi-HVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~ 423 (913)
T KOG0451|consen 379 ----------------------------------SDIAKSIQAPVI-HVNGDDPEEVVRATRLAFRYQREFRKDVFIDLN 423 (913)
T ss_pred ----------------------------------hHHHHHhCCCEE-EeCCCCHHHHHHHHHHHHHHHHHhhhhheeehH
Confidence 134778888887 88999999999987766542 23568999999
Q ss_pred ecccCCcchhhhcc----c------cccCCC-------------------------------------CCCC--------
Q 008493 202 TEKGRGYPYAEKAA----D------KYHGVA-------------------------------------KFDP-------- 226 (563)
Q Consensus 202 t~~g~g~~~~~~~~----~------~~h~~~-------------------------------------~f~~-------- 226 (563)
+.+.+|+-..++.. - .-.+++ .+.|
T Consensus 424 CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~ 503 (913)
T KOG0451|consen 424 CFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQ 503 (913)
T ss_pred HHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCchhhHHh
Confidence 99988873221100 0 000110 0000
Q ss_pred --------------CCCcc-------------CCC---------------------CcccccHHHHHHHHHHHHHhcCCC
Q 008493 227 --------------ATGKQ-------------FKS---------------------SARTQSYTTYFAEALIAEAEVDKD 258 (563)
Q Consensus 227 --------------~~~~~-------------~~~---------------------~~~~~~~~~a~~~~l~~~~~~~~~ 258 (563)
.||-. +++ ...+++|..|-..++..++-+.-+
T Consensus 504 W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~n 583 (913)
T KOG0451|consen 504 WTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHN 583 (913)
T ss_pred hhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCc
Confidence 01100 011 124678888989999999999999
Q ss_pred EEEEecCCCCCcChH--------HHHHhC-------C--C---CeeecccchHHHHHHHHHHhhCC--CeeEEee-chhh
Q 008493 259 VVAIHAAMGGGTGLN--------LFLRRF-------P--T---RCFDVGIAEQHAVTFAAGLACEG--LKPFCAI-YSSF 315 (563)
Q Consensus 259 v~~~~~D~~~s~~~~--------~~~~~~-------p--~---r~i~~gi~E~~~~~~a~G~a~~G--~~~~~~~-~~~f 315 (563)
+.+-+.|+|.++--. ...+-| + + -+-|..++|.+..|.-.|+|... .-++++. |++|
T Consensus 584 VRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDF 663 (913)
T KOG0451|consen 584 VRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDF 663 (913)
T ss_pred eeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhccc
Confidence 999999999766210 000000 1 1 24578999999999999999985 5577776 8888
Q ss_pred HH---HHHHHHHHHhc---cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcC-----------CCcEEEecCCHHHHH
Q 008493 316 MQ---RAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACL-----------PNMVVMAPSDEAELF 378 (563)
Q Consensus 316 ~~---~a~dqi~~~a~---~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~-----------p~~~v~~P~~~~e~~ 378 (563)
.+ -.+|.++.... +...-++++.+| |+.| .|+-|+.+.--.|++.. -|+.|+-|.+|.+.+
T Consensus 664 fNGAQIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYf 741 (913)
T KOG0451|consen 664 FNGAQIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYF 741 (913)
T ss_pred ccCceEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHH
Confidence 63 33444432221 123345555555 4433 48899987655665521 368999999999999
Q ss_pred HHHHHH-HhcCCCCEEEEecCCCCCCccCCCCC-CCCccccCce--EEEee-----C-CcEEEEEechhHHHHHHHHHHH
Q 008493 379 HMVATA-AAIDDRPSCFRYPRGNGIGVELPPGN-KGIPLEVGKG--RILIE-----G-ERVALLGYGTAVQSCLAASALL 448 (563)
Q Consensus 379 ~~l~~a-~~~~~~P~~i~~~~~~~~~~~~p~~~-~~~~~~~~k~--~~l~~-----g-~dv~iv~~G~~~~~~~~Aa~~L 448 (563)
.+++.- ..+..+|.++..++..+. +|... ....+..|.- .++.+ . -+.+|+++|--.....++-+.+
T Consensus 742 HlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVigd~~~~p~kvkkvifcSGKH~y~l~k~Re~r 818 (913)
T KOG0451|consen 742 HLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIGDTIAKPEKVKKVIFCSGKHYYTLAKEREKR 818 (913)
T ss_pred HHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCccccccccccccChhHheEEEEecCcchhhHHHHHHhc
Confidence 999854 456789999877776432 22100 0111222211 12222 1 2678899999888777776654
Q ss_pred HhCCCceEEeeccccccCcHHHHHHHhccC----CEEEEEeCCCCCChHHHHHHHH
Q 008493 449 ESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 449 ~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~----~~vvvvE~~~~gg~g~~v~~~l 500 (563)
.... .+.++.+-+|-|||.+.+...++++ +.|+..|++..-|-++.|.-..
T Consensus 819 gakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFVrPRF 873 (913)
T KOG0451|consen 819 GAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRF 873 (913)
T ss_pred cccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcceeechHH
Confidence 3222 3789999999999999998888776 4788999987555555555443
No 81
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.59 E-value=1.9e-15 Score=145.53 Aligned_cols=139 Identities=22% Similarity=0.310 Sum_probs=109.9
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCC-CcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC--CCCC
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD--GPIP 102 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~-~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~--~~~~ 102 (563)
++.+-++||.|+|+|.|.|+..++ +.+||++|||+..||.+|-++|+|+....|+||+|-||| |.|+|++.+ ..+.
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG-~AISTptseQyr~DG 270 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNG-WAISTPTSEQYRGDG 270 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCC-eeeccccHHHhcCCc
Confidence 366788999999999999976655 889999999999999999999999999999999999999 777776543 1110
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+ .....++|+..+ .+||+|.-+++.
T Consensus 271 --------------------------------------I----------------a~kG~aYGi~sI-RVDGnD~lAvYn 295 (432)
T KOG1182|consen 271 --------------------------------------I----------------AVKGPAYGIRSI-RVDGNDALAVYN 295 (432)
T ss_pred --------------------------------------e----------------EEeccccceEEE-EecCcchHHHHH
Confidence 0 011557899988 679999999999
Q ss_pred HHHHHhcc--CCCCcEEEEEEecccCCcchhhhccccccCC
Q 008493 183 ILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAADKYHGV 221 (563)
Q Consensus 183 a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~ 221 (563)
|.+.|++. ..++|++|++.|++-..++..+ ++..+.++
T Consensus 296 A~k~ARe~av~e~rPvliEamtYRvGHHSTSD-DSt~YRsa 335 (432)
T KOG1182|consen 296 AVKEAREMAVTEQRPVLIEAMTYRVGHHSTSD-DSTAYRSA 335 (432)
T ss_pred HHHHHHHHHHhccCchhhhhhhhhhccccCCC-ccccccch
Confidence 99988762 3568999999999876666643 33444443
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.59 E-value=6.5e-15 Score=138.31 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=91.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CCEEEEEeCCCCcccCcccCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
+..|+||+++|+|+|+++|. +++|||++|||+|++ ..+++.+++.++ +|+++||.||+.+.+.. .+....
T Consensus 39 ~~~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m--~~~el~ta~~~~~~pv~~vV~NN~~yg~~~-~q~~~~- 109 (181)
T TIGR03846 39 YMLGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLM--NLGVLPTIAAESPKNLILVILDNGAYGSTG-NQPTPA- 109 (181)
T ss_pred eeccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHh--hhhHHHHHHHhCCCCeEEEEEeCCcccccc-CcCCCC-
Confidence 45899999999999999985 688999999999994 447899999999 69999999998544311 000000
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEee-ccCCCCHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIG-PVDGHNVDDLV 181 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~dG~d~~~l~ 181 (563)
. -.+|+.++++++|+++.+ + +++++|.
T Consensus 110 ------------------------------------------------~-~~~d~~~lA~a~G~~~~~~v---~~~~~l~ 137 (181)
T TIGR03846 110 ------------------------------------------------S-RRTDLELVAKAAGIRNVEKV---ADEEELR 137 (181)
T ss_pred ------------------------------------------------C-CCCCHHHHHHHCCCCeEEEe---CCHHHHH
Confidence 0 013456679999998876 4 7899999
Q ss_pred HHHHHHhccCCCCcEEEEEEecccC
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++ +.+ .++|++|++.+.++.
T Consensus 138 ~al~-a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 138 DALK-ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred HHHH-HHc--CCCCEEEEEEeCCCC
Confidence 9997 765 689999999987554
No 83
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.59 E-value=3.5e-15 Score=139.77 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=95.0
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|.||+++|+|+|+++|. +++|||++|||+|+ +...+|.++.++++|+++||.||+.+.+-...+.
T Consensus 47 ~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~---- 115 (175)
T cd02009 47 NRGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQ---- 115 (175)
T ss_pred cCCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheeccC----
Confidence 455688999999999999984 68899999999999 5568899999999999999999985443111000
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
......|.. .......+|+.+++++||+++.++ ++.++|.+
T Consensus 116 -----------~~~~~~~~~-------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 156 (175)
T cd02009 116 -----------ASFEDEFER-------------------------LFGTPQGLDFEHLAKAYGLEYRRV---SSLDELEQ 156 (175)
T ss_pred -----------Ccccchhhh-------------------------hhcCCCCCCHHHHHHHcCCCeeeC---CCHHHHHH
Confidence 000000000 000001256778899999998877 78999999
Q ss_pred HHHHHhccCCCCcEEEEEEec
Q 008493 183 ILEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~ 203 (563)
+++++.+ .++|++|++.+.
T Consensus 157 al~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 157 ALESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHh--CCCCEEEEEeCC
Confidence 9999987 689999999863
No 84
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.58 E-value=7.4e-15 Score=138.09 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=94.9
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|+|++|||+++.+ ..++.++..+++|+++||.||+.+.+
T Consensus 47 ~~~~g~mG~~~~~aiGa~~a~~----~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~---------- 110 (178)
T cd02014 47 SGLLATMGNGLPGAIAAKLAYP----DRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGF---------- 110 (178)
T ss_pred CCCCchhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhH----------
Confidence 3456999999999999999864 8899999999999965 46699999999999999999985332
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+ +..++....+. +..++-.+++.++++++|+++..+ .+.+++.+
T Consensus 111 ----~-~~~~~~~~~~~----------------------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 154 (178)
T cd02014 111 ----I-KWEQEVMGQPE----------------------------FGVDLPNPDFAKIAEAMGIKGIRV---EDPDELEA 154 (178)
T ss_pred ----H-HHHHHHhcCCc----------------------------eeccCCCCCHHHHHHHCCCeEEEe---CCHHHHHH
Confidence 1 11111000000 001111245667799999998755 68999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++++.+ .++|++|++++.+.
T Consensus 155 ~l~~a~~--~~~p~liev~~~~~ 175 (178)
T cd02014 155 ALDEALA--ADGPVVIDVVTDPN 175 (178)
T ss_pred HHHHHHh--CCCCEEEEEEeCCC
Confidence 9999987 68999999998643
No 85
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.57 E-value=1.6e-14 Score=135.57 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=92.5
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CCEEEEEeCCCCcccCcccCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
..+..|+||+++|+|+|+|+|.+ ++|||++|||+++ +..+++.++..++ .|+++||.||+.+++...... .
T Consensus 37 ~~~~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~-~ 108 (179)
T cd03372 37 NFYMLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPT-H 108 (179)
T ss_pred ccccccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCC-C
Confidence 33458999999999999999964 7899999999998 4457899999998 579999888875554211100 0
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
. ...+++..++++||+++..+ ++ +.+++
T Consensus 109 ------~--------------------------------------------~~~~d~~~lA~a~G~~~~~v-~~-~~~el 136 (179)
T cd03372 109 ------A--------------------------------------------GKKTDLEAVAKACGLDNVAT-VA-SEEAF 136 (179)
T ss_pred ------C--------------------------------------------CCCCCHHHHHHHcCCCeEEe-cC-CHHHH
Confidence 0 00134556799999998744 33 89999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
.++++++. ++|++|+++|.++.+
T Consensus 137 ~~al~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 137 EKAVEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHHHHhc----CCCEEEEEEEcCCCC
Confidence 99999886 579999999987665
No 86
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.57 E-value=7.6e-15 Score=138.06 Aligned_cols=133 Identities=22% Similarity=0.230 Sum_probs=92.6
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+ |+||+++|+|+|+++|.+ +++|||++|||+++++. +++.+|+.+++|+++||.||+.+.+
T Consensus 46 ~~~-g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~---------- 108 (178)
T cd02002 46 LRG-GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGA---------- 108 (178)
T ss_pred cCC-ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHH----------
Confidence 345 999999999999999975 88999999999999654 7899999999999999999985332
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+ +..+.......... .... . . ....-.+++.++++++|+++..+ .+.+++.+
T Consensus 109 ----~-~~~~~~~~~~~~~~----~~~~----~---~---------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 160 (178)
T cd02002 109 ----L-RSFLKRVGPEGPGE----NAPD----G---L---------DLLDPGIDFAAIAKAFGVEAERV---ETPEELDE 160 (178)
T ss_pred ----H-HHHHHHHcCCCccc----cccc----c---c---------ccCCCCCCHHHHHHHcCCceEEe---CCHHHHHH
Confidence 1 11111000000000 0000 0 0 00001245667799999998756 56999999
Q ss_pred HHHHHhccCCCCcEEEEEEe
Q 008493 183 ILEEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t 202 (563)
+++++.+ .++|++|++++
T Consensus 161 al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 161 ALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHh--CCCCEEEEEEC
Confidence 9999987 68899999874
No 87
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.55 E-value=1.3e-14 Score=132.92 Aligned_cols=131 Identities=20% Similarity=0.296 Sum_probs=93.5
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
...+.|+||+++|+|+|+++|.+ +++|||++|||+|+. ...+|.++.++++|+++||.||+.+.+
T Consensus 23 ~~~~~g~mG~~~~~aiGa~~a~p----~~~vv~i~GDG~f~~--~~~el~ta~~~~~~v~~vv~nN~~~~~--------- 87 (153)
T PF02775_consen 23 TSGGFGSMGYALPAAIGAALARP----DRPVVAITGDGSFLM--SLQELATAVRYGLPVVIVVLNNGGYGM--------- 87 (153)
T ss_dssp ESTTTT-TTTHHHHHHHHHHHST----TSEEEEEEEHHHHHH--HGGGHHHHHHTTSSEEEEEEESSBSHH---------
T ss_pred cCCCccccCCHHHhhhHHHhhcC----cceeEEecCCcceee--ccchhHHHhhccceEEEEEEeCCcceE---------
Confidence 34577999999999999999854 899999999999994 467899999999999999999985322
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
.. ..+.......+. ... .+.+..+|+..+++++|+++.+ ++..|++++.
T Consensus 88 -----~~-~~~~~~~~~~~~-------------~~~-----------~~~~~~~d~~~~a~a~G~~~~~-v~~~~~~el~ 136 (153)
T PF02775_consen 88 -----TG-GQQTPFGGGRFS-------------GVD-----------GKTFPNPDFAALAEAFGIKGAR-VTTPDPEELE 136 (153)
T ss_dssp -----HH-HHHHHTTSTCHH-------------STB-----------TTTSTTCGHHHHHHHTTSEEEE-ESCHSHHHHH
T ss_pred -----ec-cccccCcCcccc-------------ccc-----------ccccccCCHHHHHHHcCCcEEE-EccCCHHHHH
Confidence 11 111111000000 000 0012235677789999999774 4445559999
Q ss_pred HHHHHHhccCCCCcEEEEE
Q 008493 182 AILEEVKNTKTTGPVLIHV 200 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v 200 (563)
++++++.+ .++|++|+|
T Consensus 137 ~al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 137 EALREALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHHHHH--SSSEEEEEE
T ss_pred HHHHHHHh--CCCcEEEEc
Confidence 99999997 789999987
No 88
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.54 E-value=2.1e-14 Score=135.38 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=93.8
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|.|+|+++|.+ +++|+|++|||+|+. ...++.+++++++|+++||.||+.+.+....+...
T Consensus 46 ~~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~--~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~-- 117 (183)
T cd02005 46 QPLWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQM--TVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPE-- 117 (183)
T ss_pred ccchhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhc--cHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCC--
Confidence 3456999999999999999975 789999999999985 44568899999999999999998544311111000
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcC----ceEeeccCCCCHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG----LYYIGPVDGHNVD 178 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G----~~~~~~~dG~d~~ 178 (563)
..+ .++..+|+..+++++| +++..+ ++.+
T Consensus 118 ---------------~~~-----------------------------~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~ 150 (183)
T cd02005 118 ---------------ASY-----------------------------NDIANWNYTKLPEVFGGGGGGLSFRV---KTEG 150 (183)
T ss_pred ---------------cCc-----------------------------ccCCCCCHHHHHHHhCCCccccEEEe---cCHH
Confidence 000 0011245567799999 577656 8899
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEecccC
Q 008493 179 DLVAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 179 ~l~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++.++++++.+ ..++|++|++.+.+..
T Consensus 151 el~~al~~a~~-~~~~p~liev~~~~~~ 177 (183)
T cd02005 151 ELDEALKDALF-NRDKLSLIEVILPKDD 177 (183)
T ss_pred HHHHHHHHHHh-cCCCcEEEEEEcCccc
Confidence 99999999885 2478999999986543
No 89
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.50 E-value=6.5e-14 Score=152.84 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=100.7
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
...+.|.||+++|+|+|+++|.. +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.+.
T Consensus 403 ~s~~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g---------- 466 (550)
T COG0028 403 TSGGLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYG---------- 466 (550)
T ss_pred cCCCCccccchHHHHHHHHhhCC----CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccc----------
Confidence 33467999999999999999976 89999999999999 677899999999999999999998532
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
.+ +++...+.... .+..++..+.+..++++||++..++ .+.++|.
T Consensus 467 ----~v----------------~~~q~~~~~~~------------~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~ 511 (550)
T COG0028 467 ----MV----------------RQWQELFYGGR------------YSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELE 511 (550)
T ss_pred ----cc----------------hHHHHHhcCCC------------cceeecCCccHHHHHHHcCCeeEEe---CCHHHHH
Confidence 22 11111111000 0111222211567899999998877 7999999
Q ss_pred HHHHHHhccCCCCcEEEEEEeccc
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++++++.+ .++|++|++.+.+.
T Consensus 512 ~al~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 512 EALEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHHHh--CCCCEEEEEEecCc
Confidence 99999998 78999999999977
No 90
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.49 E-value=1.3e-13 Score=142.53 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=96.3
Q ss_pred CCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CCEEEEEeCCCCcccCcccCC
Q 008493 20 EYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 20 ~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~pli~iv~nN~~~s~~t~~~~ 98 (563)
+..++..|+||+++|+|+|+|+|.+ +++|||+.|||+++ |..++|.+++.++ .|+++||.||+.+.. +..+.
T Consensus 214 ~~~f~~~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-~g~q~ 286 (361)
T TIGR03297 214 ARDFLTVGSMGHASQIALGLALARP----DQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-VGGQP 286 (361)
T ss_pred CCceEeechhhhHHHHHHHHHHHCC----CCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-cCCcC
Confidence 3445567999999999999999975 89999999999998 6668899999998 599999999985332 11111
Q ss_pred CCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCce-EeeccCCCCH
Q 008493 99 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNV 177 (563)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~dG~d~ 177 (563)
. .. ...|+..++++||+. ...+ ++.
T Consensus 287 ~----~~-----------------------------------------------~~~d~~~iA~a~G~~~~~~v---~~~ 312 (361)
T TIGR03297 287 T----VS-----------------------------------------------QHLDFAQIAKACGYAKVYEV---STL 312 (361)
T ss_pred C----CC-----------------------------------------------CCCCHHHHHHHCCCceEEEe---CCH
Confidence 0 00 012345669999984 4434 899
Q ss_pred HHHHHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 178 DDLVAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 178 ~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
++|.++++++.+ .++|++|++++.++..
T Consensus 313 ~eL~~al~~a~~--~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 313 EELETALTAASS--ANGPRLIEVKVRPGSR 340 (361)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEEecCCCc
Confidence 999999999986 6889999999988764
No 91
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.49 E-value=1.9e-13 Score=129.92 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=95.0
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccc-cccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~-~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
.|+||+++|+|+|+++|.+ +++||+++|||+ ++ +..++|.++.++++|+++||.||+.+......+. .....
T Consensus 50 ~g~mG~glpaAiGa~la~p----~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~-~~~~~ 122 (193)
T cd03375 50 HTLHGRALAVATGVKLANP----DLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTTPE 122 (193)
T ss_pred hhhhccHHHHHHHHHHhCC----CCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccC-CCCCC
Confidence 3899999999999999875 899999999999 55 5567899999999999999999985443221111 00000
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.- . ....+ + .....+|+..+++++|++++..+.-.+.+++.+++
T Consensus 123 ~~~------~-~~~~~--------------~--------------~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 167 (193)
T cd03375 123 GFK------T-KTTPY--------------G--------------NIEEPFNPLALALAAGATFVARGFSGDIKQLKEII 167 (193)
T ss_pred CCc------c-cCCCC--------------C--------------CCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHH
Confidence 000 0 00000 0 00001355677999999875322337899999999
Q ss_pred HHHhccCCCCcEEEEEEecccCC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++.+ .++|++|++.+..-.+
T Consensus 168 ~~al~--~~gp~vIev~~~C~~~ 188 (193)
T cd03375 168 KKAIQ--HKGFSFVEVLSPCPTF 188 (193)
T ss_pred HHHHh--cCCCEEEEEECCCCCC
Confidence 99997 6899999999775443
No 92
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.48 E-value=1.1e-13 Score=153.76 Aligned_cols=131 Identities=17% Similarity=0.215 Sum_probs=98.7
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ ++..+|.+|+++++|+++||.||+.|.
T Consensus 426 ~~~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y~----------- 488 (595)
T PRK09107 426 SGGLGTMGYGLPAALGVQIAHP----DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYMG----------- 488 (595)
T ss_pred CCCchhhhhhHHHHHHHHHhCC----CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCccH-----------
Confidence 3456999999999999999975 89999999999999 566789999999999999999998532
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+. ..++...+..+.. ......+|+..++++||++..++ ++.++|.+
T Consensus 489 ---~i~-~~q~~~~~~~~~~--------------------------~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 535 (595)
T PRK09107 489 ---MVR-QWQQLLHGNRLSH--------------------------SYTEAMPDFVKLAEAYGAVGIRC---EKPGDLDD 535 (595)
T ss_pred ---HHH-HHHHHHhCCcccc--------------------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 221 1111111100000 00001246778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++++.+ .++|++|+|.+.+.
T Consensus 536 al~~a~~--~~~p~lIeV~i~~~ 556 (595)
T PRK09107 536 AIQEMID--VDKPVIFDCRVANL 556 (595)
T ss_pred HHHHHHh--CCCCEEEEEEecCc
Confidence 9999987 68999999999753
No 93
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.47 E-value=2.6e-13 Score=149.68 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=99.4
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |..++|.++.++++|+++||.||+.+.
T Consensus 404 ~~~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~----------- 466 (539)
T TIGR02418 404 SNGMQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYN----------- 466 (539)
T ss_pred CCCccccccHHHHHHHHHHhCC----CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcch-----------
Confidence 3467999999999999999975 89999999999999 666789999999999999999998533
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+. ..+....+ .+ ...++-.+|+..++++||+++.++ ++.++|.+
T Consensus 467 ---~~~-~~~~~~~~-~~---------------------------~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~ 511 (539)
T TIGR02418 467 ---MVE-FQEEMKYQ-RS---------------------------SGVDFGPIDFVKYAESFGAKGLRV---ESPDQLEP 511 (539)
T ss_pred ---HHH-HHHHHhcC-Cc---------------------------ccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 221 10000000 00 001222357778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+ .++|++|++.+.+..
T Consensus 512 al~~a~~--~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 512 TLRQAME--VEGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999987 689999999997544
No 94
>PRK12474 hypothetical protein; Provisional
Probab=99.46 E-value=2.1e-13 Score=149.56 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=94.5
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.|.
T Consensus 388 ~gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~-------------- 447 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYA-------------- 447 (518)
T ss_pred CCccCccHHHHHHHHHHCC----CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcch--------------
Confidence 3999999999999999975 89999999999999 666889999999999999999998532
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc--cCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+....+.......++. .....+.. ..|+.+++++||++..++ ++.++|.++
T Consensus 448 ~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~a 501 (518)
T PRK12474 448 ILNGELQRVGAQGAGRN-----------------------ALSMLDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQ 501 (518)
T ss_pred HHHHHHHhhcCCCCCcc-----------------------ccccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 22111100000000000 00000111 136778899999998877 889999999
Q ss_pred HHHHhccCCCCcEEEEEEe
Q 008493 184 LEEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t 202 (563)
++++.+ .++|++|++.+
T Consensus 502 l~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 502 YAAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHHc--CCCCEEEEEEC
Confidence 999987 68999999974
No 95
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.46 E-value=2.6e-13 Score=132.71 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=96.4
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEccccc-ccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
.|+||+++|.|+|++++. ++++|||++|||++ + +..++|.+|+++++|+++||.||+.+.+. ..|.......
T Consensus 61 ~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~t-g~q~~~~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGRG----KDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMNT-GIQRSGSTPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCcccccC-CCCCCCCCCC
Confidence 479999999999987765 48999999999995 6 55688999999999999999999865532 1122111000
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.. ..... .+. ++. ..+.-.+|+..+++++|++++..+..++++++.+++
T Consensus 134 ~~~------~~~~~---------------~g~---~~~------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAW------TTTTP---------------VGK---VSF------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCE------eecCC---------------CCc---ccc------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 100 00000 000 000 000012466678999999886545558999999999
Q ss_pred HHHhccCCCCcEEEEEEecccC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++.+ .++|++|++.+..-.
T Consensus 184 ~~a~~--~~gP~lIev~~~C~~ 203 (235)
T cd03376 184 KKALS--IEGPAYIHILSPCPT 203 (235)
T ss_pred HHHHh--CCCCEEEEEECCCCC
Confidence 99987 689999999987543
No 96
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.46 E-value=1.9e-13 Score=151.90 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=98.7
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+++|.+ +++|||++|||+|+ |..++|.+|.++++|+++||.||+.+.+
T Consensus 405 ~~~G~mG~~lpaAiGa~la~p----~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~----------- 467 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAHP----GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGF----------- 467 (574)
T ss_pred CCcccccchHHHHHHHHHhCC----CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCcccc-----------
Confidence 456999999999999999875 89999999999999 5667899999999999999999985332
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+. +.+... ++. ....++-.+|+..++++||+++.++ ++.++|.++
T Consensus 468 ---i~-~~~~~~---~~~-------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 512 (574)
T PRK09124 468 ---VA-MEMKAG---GYL-------------------------TDGTDLHNPDFAAIAEACGITGIRV---EKASELDGA 512 (574)
T ss_pred ---HH-HHHHhc---CCc-------------------------cccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 21 111000 000 0011222356778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|+|.+.+..
T Consensus 513 l~~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 513 LQRAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHHh--CCCCEEEEEEecCcc
Confidence 999987 688999999987544
No 97
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.46 E-value=2.7e-13 Score=150.71 Aligned_cols=133 Identities=15% Similarity=0.250 Sum_probs=99.6
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
...+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+..+|.+|.++++|+++||.||+.+
T Consensus 432 ~~~~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~----------- 494 (587)
T PRK06965 432 NSGGLGTMGVGLPYAMGIKMAHP----DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYL----------- 494 (587)
T ss_pred cCCCcccccchHHHHHHHHHhCC----CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcc-----------
Confidence 34456999999999999999975 89999999999999 66688999999999999999999853
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
+.+.. .+.......+. ..++ ..+|+..++++||+++.++ ++.++|
T Consensus 495 ---~~i~~-~q~~~~~~~~~---------------------------~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL 540 (587)
T PRK06965 495 ---GMVRQ-WQEIEYSKRYS---------------------------HSYMDALPDFVKLAEAYGHVGMRI---EKTSDV 540 (587)
T ss_pred ---hHHHH-HHHHhcCCCcc---------------------------ccCCCCCCCHHHHHHHCCCEEEEE---CCHHHH
Confidence 22211 11110000000 0011 1256778899999998877 899999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
.++++++.+. .++|++|+|.+.+..
T Consensus 541 ~~al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 541 EPALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHHHhc-CCCcEEEEEEecccc
Confidence 9999999862 368999999997544
No 98
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.45 E-value=2.2e-13 Score=150.69 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=97.4
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...++.+|.++++|+++||.||+.+.
T Consensus 419 ~~~gsmG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~------------ 480 (570)
T PRK06725 419 GGLGTMGFGFPAAIGAQLAKE----EELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLG------------ 480 (570)
T ss_pred CCcccccchhhHHHhhHhhcC----CCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccH------------
Confidence 345999999999999999964 89999999999998 556789999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+. ..++...+..+. ..++-.+|+..++++||++..++ ++.+++.++
T Consensus 481 --~~~-~~q~~~~~~~~~---------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~a 527 (570)
T PRK06725 481 --MVR-QWQEMFYENRLS---------------------------ESKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQV 527 (570)
T ss_pred --HHH-HHHHHhcCCccc---------------------------cCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 111 111110000010 00111346677899999998867 799999999
Q ss_pred HHHHhccCCCCcEEEEEEeccc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++++.+ .++|++|++.+.+.
T Consensus 528 l~~a~~--~~~p~liev~id~~ 547 (570)
T PRK06725 528 MLEAFA--HEGPVVVDFCVEEG 547 (570)
T ss_pred HHHHHh--CCCCEEEEEEeCCc
Confidence 999987 68999999999753
No 99
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.45 E-value=2.6e-13 Score=150.59 Aligned_cols=129 Identities=16% Similarity=0.306 Sum_probs=97.9
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...++.+|+++++|+++||.||+.+.+
T Consensus 405 ~~~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~g~----------- 467 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLADP----GRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTLGM----------- 467 (578)
T ss_pred CCcccccchhHHHHHHHHhCC----CCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCcccc-----------
Confidence 456999999999999999975 89999999999999 4557899999999999999999985332
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+... +.....+ ....++-.+|+.+++++||+++.++ +++++|.++
T Consensus 468 ---i~~~-q~~~~~~----------------------------~~~~~~~~~df~~lA~a~G~~~~~v---~~~~el~~a 512 (578)
T PRK06546 468 ---VKLE-MLVDGLP----------------------------DFGTDHPPVDYAAIAAALGIHAVRV---EDPKDVRGA 512 (578)
T ss_pred ---HHHH-HHhcCCC----------------------------cccccCCCCCHHHHHHHCCCeeEEe---CCHHHHHHH
Confidence 2100 0000000 0001122356778899999988766 799999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|++.+.+..
T Consensus 513 l~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 513 LREAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHHHh--CCCCEEEEEEeCCCc
Confidence 999987 689999999997553
No 100
>PRK06154 hypothetical protein; Provisional
Probab=99.45 E-value=1.8e-13 Score=151.39 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=98.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|.|+|+++|.+ +++|||++|||+|+ |+.++|.+|+++++|+++||.||+.|.+
T Consensus 429 ~~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~------------ 490 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLARP----DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGG------------ 490 (565)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccce------------
Confidence 46999999999999999975 89999999999999 6668899999999999999999985432
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.... ... ...+ ...+ ..+|+.+++++||++..++ ++.++|.+++
T Consensus 491 --~~~~~-~~~-~~~~---------------------------~~~~-~~~df~~lA~a~G~~g~~V---~~~~el~~al 535 (565)
T PRK06154 491 --YDKVM-PVS-TTKY---------------------------RATD-ISGDYAAIARALGGYGERV---EDPEMLVPAL 535 (565)
T ss_pred --eehhh-hhh-cCcc---------------------------cccC-CCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 10000 000 0000 0001 1246778899999998877 8999999999
Q ss_pred HHHhcc-CCCCcEEEEEEecccCCc
Q 008493 185 EEVKNT-KTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 185 ~~a~~~-~~~~P~~I~v~t~~g~g~ 208 (563)
+++.+. ..++|++|++.+.+....
T Consensus 536 ~~a~~~~~~~~p~lIev~v~~~~~~ 560 (565)
T PRK06154 536 LRALRKVKEGTPALLEVITSEETAL 560 (565)
T ss_pred HHHHhhccCCCeEEEEEEeChHHhc
Confidence 999741 247899999999765543
No 101
>PRK07524 hypothetical protein; Provisional
Probab=99.45 E-value=2.6e-13 Score=149.49 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=98.4
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|+++++|+++||.||+.+
T Consensus 404 ~~~g~mG~~lp~aiGa~lA~p----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~------------- 464 (535)
T PRK07524 404 TGYGTLGYGLPAAIGAALGAP----ERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGY------------- 464 (535)
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCch-------------
Confidence 346999999999999999964 89999999999998 55577999999999999999999743
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+.... +..... ....++..+|+..++++||+++.++ ++.++|.++
T Consensus 465 -g~i~~~~-~~~~~~----------------------------~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~a 511 (535)
T PRK07524 465 -GEIRRYM-VARDIE----------------------------PVGVDPYTPDFIALARAFGCAAERV---ADLEQLQAA 511 (535)
T ss_pred -HHHHHHH-HHhcCC----------------------------ccccCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHH
Confidence 2221110 000000 0011222356778899999998766 789999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
++++.+ .++|++|+|++.+-.+
T Consensus 512 l~~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 512 LRAAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHHh--CCCCEEEEEECCcccc
Confidence 999987 6899999999886543
No 102
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.45 E-value=2.9e-13 Score=149.50 Aligned_cols=129 Identities=17% Similarity=0.307 Sum_probs=98.3
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+++|.+ ++++|||++|||+|+ +..++|.+|.++++|+++||.||+.+.
T Consensus 393 ~~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g------------ 455 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLG------------ 455 (549)
T ss_pred CCcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccc------------
Confidence 346999999999999999862 178999999999999 666889999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+. ..++....+ .+..++..+|+.+++++||+++.++ ++.++|..+
T Consensus 456 --~i~-~~q~~~~~~----------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 501 (549)
T PRK06457 456 --MIK-FEQEVMGYP----------------------------EWGVDLYNPDFTKIAESIGFKGFRL---EEPKEAEEI 501 (549)
T ss_pred --hHH-HHHHHhcCC----------------------------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 221 111110000 0011222357778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEeccc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++++.+ .++|++|+|++.+.
T Consensus 502 l~~a~~--~~~p~lIeV~i~~~ 521 (549)
T PRK06457 502 IEEFLN--TKGPAVLDAIVDPN 521 (549)
T ss_pred HHHHHh--CCCCEEEEEEeCcc
Confidence 999987 68899999999743
No 103
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.3e-11 Score=130.05 Aligned_cols=418 Identities=15% Similarity=0.159 Sum_probs=262.2
Q ss_pred CCCchhhHHHHHHHHhhhhcC-----CCCcEEEEEcccccc-cchhHHHHHhhcccC---CCEEEEEeCCCCcccCcccC
Q 008493 27 GHSSTSISAGLGMAVGRDLKG-----RKNNVVAVIGDGAMT-AGQAYEAMNNAGYLD---SDMIVILNDNKQVSLPTATL 97 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~-----~~~~vv~~~GDG~~~-~G~~~Eal~~a~~~~---~pli~iv~nN~~~s~~t~~~ 97 (563)
+|+-..=|..+|--.|..... .+..-|.+-||++|. +|.+||.+.+-..-. .-.+.||.||+ +..+|..-
T Consensus 374 SHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQ-IgFTTDPR 452 (1017)
T KOG0450|consen 374 SHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQ-IGFTTDPR 452 (1017)
T ss_pred hhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccc-cccccCcc
Confidence 344344455666655554432 234567889999998 799999998876433 56778888998 66655432
Q ss_pred CCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCH
Q 008493 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNV 177 (563)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~ 177 (563)
.++..+| ...++++.+.+.+ .++++|+
T Consensus 453 ~aRSspY----------------------------------------------------cTDvar~v~aPIF-HVNaDD~ 479 (1017)
T KOG0450|consen 453 FARSSPY----------------------------------------------------CTDVARVVNAPIF-HVNADDP 479 (1017)
T ss_pred cccCCCC----------------------------------------------------chhHHHHhCCCeE-eecCCCh
Confidence 2222222 2233566666644 7899999
Q ss_pred HHHHHHHHHHhccCC--CCcEEEEEEecccCCcchhhhc----cc---cccCCC--------------------------
Q 008493 178 DDLVAILEEVKNTKT--TGPVLIHVVTEKGRGYPYAEKA----AD---KYHGVA-------------------------- 222 (563)
Q Consensus 178 ~~l~~a~~~a~~~~~--~~P~~I~v~t~~g~g~~~~~~~----~~---~~h~~~-------------------------- 222 (563)
+++.-+++-|.+|+. .+-++|++.+++-.|+-..++. +. ..+..+
T Consensus 480 EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~ 559 (1017)
T KOG0450|consen 480 EAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIK 559 (1017)
T ss_pred HHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 998877776665522 3568999999888876432210 00 000000
Q ss_pred -------------------------------CCCC----------CCC----------cc---CCC--------------
Q 008493 223 -------------------------------KFDP----------ATG----------KQ---FKS-------------- 234 (563)
Q Consensus 223 -------------------------------~f~~----------~~~----------~~---~~~-------------- 234 (563)
.|.+ .|| +. +|+
T Consensus 560 k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~ 639 (1017)
T KOG0450|consen 560 KYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKN 639 (1017)
T ss_pred HHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHH
Confidence 0111 011 00 010
Q ss_pred -----CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh---HH-------------HHHhCCCC----eeecccc
Q 008493 235 -----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NL-------------FLRRFPTR----CFDVGIA 289 (563)
Q Consensus 235 -----~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~-------------~~~~~p~r----~i~~gi~ 289 (563)
+.+..+|.-+-..++..++++.-.|.+-+.|+..++-- .- +.--.|++ +-|..++
T Consensus 640 R~~mi~~~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLS 719 (1017)
T KOG0450|consen 640 RAQMIKSEGVDWALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLS 719 (1017)
T ss_pred HHHhhhhcccchHHHHHHHHHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchh
Confidence 01344565555567778889999999999999766511 01 11122443 5699999
Q ss_pred hHHHHHHHHHHhhC--CCeeEEee-chhhH---HHHHHHHHHHhc---cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhh
Q 008493 290 EQHAVTFAAGLACE--GLKPFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM 360 (563)
Q Consensus 290 E~~~~~~a~G~a~~--G~~~~~~~-~~~f~---~~a~dqi~~~a~---~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~ 360 (563)
|.+.+|.-.|+||. ..-++++. |++|. +..+||++...- ..+.-+++..+| |+-| .||-|+...--.|+
T Consensus 720 EygVLGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfL 797 (1017)
T KOG0450|consen 720 EYGVLGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFL 797 (1017)
T ss_pred hhheecceecccccCCCceEEeehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHH
Confidence 99999999999998 47778887 89986 789999963321 134556666666 4433 58999865443444
Q ss_pred hc--------------------CCCcEEEecCCHHHHHHHHHHHHh-cCCCCEEEEecCCCCCCccC----CCCCCCCcc
Q 008493 361 AC--------------------LPNMVVMAPSDEAELFHMVATAAA-IDDRPSCFRYPRGNGIGVEL----PPGNKGIPL 415 (563)
Q Consensus 361 ~~--------------------~p~~~v~~P~~~~e~~~~l~~a~~-~~~~P~~i~~~~~~~~~~~~----p~~~~~~~~ 415 (563)
+. --||+|+.+++|...+.+|+.-+. -..+|.+|+.+|..+.+..- .+..+...+
T Consensus 798 Qm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~f 877 (1017)
T KOG0450|consen 798 QMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGF 877 (1017)
T ss_pred HhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCC
Confidence 31 137999999999999999996654 35789999999886543211 110111111
Q ss_pred c-----cCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC---CEEEEEeCC
Q 008493 416 E-----VGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEG 487 (563)
Q Consensus 416 ~-----~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~---~~vvvvE~~ 487 (563)
+ -|+...-.++-+-+|+|+|-.....-++-+.... --++.+..+-.|.|||.+.+++.++++ .-++..|++
T Consensus 878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~ 956 (1017)
T KOG0450|consen 878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH 956 (1017)
T ss_pred ceeccccccccCChhhceEEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhh
Confidence 0 1111111234467889999887755555443321 236889999999999999999988776 467788998
Q ss_pred CCCChHHHHHHHHH
Q 008493 488 SIGGFGSHVVQFLA 501 (563)
Q Consensus 488 ~~gg~g~~v~~~l~ 501 (563)
..-|-.++|.-.+.
T Consensus 957 ~NmG~w~Yv~PRl~ 970 (1017)
T KOG0450|consen 957 KNMGAWDYVEPRLR 970 (1017)
T ss_pred cccCchhhcchHHH
Confidence 76556666665553
No 104
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.45 E-value=2.7e-13 Score=150.66 Aligned_cols=141 Identities=21% Similarity=0.235 Sum_probs=98.1
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++||+++|||+|+ |..++|.+|.++++|+++||.||+.|
T Consensus 416 ~~gsmG~glpaaiGa~lA~p----dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~y-------------- 475 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAADP----KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYL-------------- 475 (588)
T ss_pred ccccccchHhHHHhhhhhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45999999999999999975 89999999999999 55688999999999999999999853
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.+.+ .+.......+... .+ .... ....+...+|+.+++++||++..++ ++.++|.+++
T Consensus 476 g~i~~-~q~~~~~~~~~~~-----~~--------~~~~----~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 534 (588)
T TIGR01504 476 GLIRQ-AQRAFDMDYCVQL-----AF--------ENIN----SSEVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAF 534 (588)
T ss_pred HHHHH-HHHHhccccccee-----ec--------cccc----cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 32211 1111000000000 00 0000 0000111256778899999998877 8999999999
Q ss_pred HHHhcc--CCCCcEEEEEEecccC
Q 008493 185 EEVKNT--KTTGPVLIHVVTEKGR 206 (563)
Q Consensus 185 ~~a~~~--~~~~P~~I~v~t~~g~ 206 (563)
+++.+. ..++|++|+|.+.+..
T Consensus 535 ~~a~~~~~~~~~p~lIeV~i~~~~ 558 (588)
T TIGR01504 535 EQAKALMAEHRVPVVVEVILERVT 558 (588)
T ss_pred HHHHhhcccCCCcEEEEEEecccc
Confidence 999741 1478999999996544
No 105
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.45 E-value=3e-13 Score=151.19 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=98.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+
T Consensus 431 ~~~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~------------- 491 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVALP----DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQ------------- 491 (616)
T ss_pred CCccccccHHHHHHHHHHhCC----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcc-------------
Confidence 356999999999999999975 89999999999999 66678999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc--ccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM--ISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
+.+. ..++...+..|.. .++ -.+|+..++++||.++.++ ++.++|.
T Consensus 492 -g~i~-~~q~~~~~~~~~~---------------------------~~~~~~~~d~~~~A~a~G~~g~~V---~~~~el~ 539 (616)
T PRK07418 492 -GMVR-QWQESFYGERYSA---------------------------SNMEPGMPDFVKLAEAFGVKGMVI---SERDQLK 539 (616)
T ss_pred -hHHH-HHHHHhcCCCcee---------------------------ecCCCCCCCHHHHHHHCCCeEEEe---CCHHHHH
Confidence 2221 1111111111100 011 1246678899999998877 8999999
Q ss_pred HHHHHHhccCCCCcEEEEEEecccC
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++++.+ .++|++|+|++.+..
T Consensus 540 ~al~~a~~--~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 540 DAIAEALA--HDGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHHh--CCCCEEEEEEecCcc
Confidence 99999987 688999999997544
No 106
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.44 E-value=3.3e-13 Score=149.45 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=98.4
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+
T Consensus 411 ~~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y------------- 471 (561)
T PRK06048 411 GGLGTMGYGFPAAIGAKVGKP----DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL------------- 471 (561)
T ss_pred CCccccccHHHHHHHHHHhCC----CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc-------------
Confidence 345999999999999999964 89999999999999 56688999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+. ..+.......|.. .++ -.+|+.+++++||+++.++ ++.++|.+
T Consensus 472 -~~i~-~~~~~~~~~~~~~---------------------------~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~ 519 (561)
T PRK06048 472 -GMVR-QWQELFYDKRYSH---------------------------TCIKGSVDFVKLAEAYGALGLRV---EKPSEVRP 519 (561)
T ss_pred -HHHH-HHHHHHcCCcccc---------------------------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 2221 1111100011100 011 1256778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+ .++|++|++.+.+..
T Consensus 520 al~~a~~--~~~p~liev~~~~~~ 541 (561)
T PRK06048 520 AIEEAVA--SDRPVVIDFIVECEE 541 (561)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999987 689999999997543
No 107
>PRK05858 hypothetical protein; Provisional
Probab=99.44 E-value=4.3e-13 Score=147.91 Aligned_cols=128 Identities=17% Similarity=0.141 Sum_probs=98.4
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ ++..++.+|.++++|+++||.||+.|.
T Consensus 405 ~~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~------------- 465 (542)
T PRK05858 405 PFGCLGTGPGYALAARLARP----SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWG------------- 465 (542)
T ss_pred CccccccchhHHHHHHHhCC----CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchh-------------
Confidence 46999999999999999975 89999999999999 666889999999999999999998532
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+....+... +. +...+. -.+|+.+++++||..+.++ .+.++|.++
T Consensus 466 -~~~~~~~~~~-~~----------------------------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 512 (542)
T PRK05858 466 -LEKHPMEALY-GY----------------------------DVAADLRPGTRYDEVVRALGGHGELV---TVPAELGPA 512 (542)
T ss_pred -hHHHHHHHhc-CC----------------------------ccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 2211100000 00 000111 1357778899999988777 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|++.+.+..
T Consensus 513 l~~a~~--~~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFA--SGVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHh--CCCcEEEEEEECCCc
Confidence 999987 689999999997653
No 108
>PRK08611 pyruvate oxidase; Provisional
Probab=99.44 E-value=3.6e-13 Score=149.46 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=99.0
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+++|.+ +++|||++|||+|+ |..++|.+|+++++|+++||.||+.+
T Consensus 405 ~~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~------------- 465 (576)
T PRK08611 405 SWLGTMGCGLPGAIAAKIAFP----DRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQL------------- 465 (576)
T ss_pred CCchhhhhhHHHHHHHHHhCC----CCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcc-------------
Confidence 346999999999999999874 89999999999999 56688999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+ +..+....... ...++-.+|+.+++++||.++.++ ++.++|.++
T Consensus 466 -g~i-~~~q~~~~~~~----------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 512 (576)
T PRK08611 466 -AFI-KYEQQAAGELE----------------------------YAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPA 512 (576)
T ss_pred -hHH-HHHHHHhcCCc----------------------------ccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 222 11111000000 001122357778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|+|.+.+..
T Consensus 513 l~~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 513 FEEALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHHh--CCCCEEEEEEeCCcc
Confidence 999987 689999999997544
No 109
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.44 E-value=3e-13 Score=150.72 Aligned_cols=131 Identities=20% Similarity=0.285 Sum_probs=97.1
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchh-HHHHHhhccc-----CCCEEEEEeCCCCcccCcccCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYL-----DSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~-~Eal~~a~~~-----~~pli~iv~nN~~~s~~t~~~~ 98 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+ .++|.+|.++ ++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~------- 479 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAHP----DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLN------- 479 (597)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcch-------
Confidence 45999999999999999975 89999999999998 55 4779999998 899999999998532
Q ss_pred CCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHH
Q 008493 99 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 178 (563)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~ 178 (563)
.+ ++.++...+..+.. ...++-..|+.+++++||+++.++ .+.+
T Consensus 480 -------~i-~~~q~~~~~~~~~~-------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~ 523 (597)
T PRK08273 480 -------QV-TWEQRVMEGDPKFE-------------------------ASQDLPDVPYARFAELLGLKGIRV---DDPE 523 (597)
T ss_pred -------HH-HHHHHHhcCCCccc-------------------------ccccCCCCCHHHHHHHCCCEEEEE---CCHH
Confidence 22 11111111100000 000111245677899999998877 8899
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEecccC
Q 008493 179 DLVAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 179 ~l~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+|..+++++.+ .++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~--~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALA--ADRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEeCCCC
Confidence 99999999987 689999999997544
No 110
>PRK07586 hypothetical protein; Validated
Probab=99.44 E-value=4e-13 Score=147.40 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=93.6
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
|+||+++|+|+|+++|.+ +++|||++|||+|+ +..++|.+|.++++|+++||.||+.| +.
T Consensus 385 g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y--------------~~ 444 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP----DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY--------------AI 444 (514)
T ss_pred cccccHHHHHHHHHHhCC----CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh--------------HH
Confidence 999999999999999975 89999999999999 66789999999999999999999853 22
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc--cCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.. .++...... .+..... ..+.. .+|+.+++++||+++.++ ++.++|.+++
T Consensus 445 ~~~-~~~~~~~~~--------------~~~~~~~--------~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al 498 (514)
T PRK07586 445 LRG-ELARVGAGN--------------PGPRALD--------MLDLDDPDLDWVALAEGMGVPARRV---TTAEEFADAL 498 (514)
T ss_pred HHH-HHHHhcCCC--------------CCccccc--------cccCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHH
Confidence 211 111000000 0000000 00111 246778899999998877 7899999999
Q ss_pred HHHhccCCCCcEEEEEEe
Q 008493 185 EEVKNTKTTGPVLIHVVT 202 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t 202 (563)
+++.+ .++|++|++.+
T Consensus 499 ~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 499 AAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHc--CCCCEEEEEEC
Confidence 99987 68999999873
No 111
>PRK08322 acetolactate synthase; Reviewed
Probab=99.44 E-value=5e-13 Score=147.74 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=99.6
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+.
T Consensus 402 ~~~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g----------- 464 (547)
T PRK08322 402 DNALATMGAGLPSAIAAKLVHP----DRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYG----------- 464 (547)
T ss_pred CCCcccccchhHHHHHHHHhCC----CCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcc-----------
Confidence 3456999999999999999964 89999999999999 556789999999999999999998532
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+. ..++....+ ....++-.+|+..++++||+++.++ ++.++|.+
T Consensus 465 ---~~~-~~~~~~~~~----------------------------~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~ 509 (547)
T PRK08322 465 ---MIR-WKQENMGFE----------------------------DFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLP 509 (547)
T ss_pred ---hHH-HHHHhhcCC----------------------------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHH
Confidence 221 111100000 0001111357778899999998877 88999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++++.+ .++|++|+|.+.+...
T Consensus 510 al~~a~~--~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 510 TLEEALA--QPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHHHHh--CCCCEEEEEEecCccC
Confidence 9999986 6899999999976544
No 112
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.43 E-value=4.6e-13 Score=148.85 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=98.3
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+
T Consensus 426 ~~~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y------------ 487 (585)
T CHL00099 426 SAGLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQ------------ 487 (585)
T ss_pred CccccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcc------------
Confidence 3456999999999999999975 89999999999999 66688999999999999999999853
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+. ..++......+.. ...+...+++..++++||.++.++ ++.++|.+
T Consensus 488 --~~i~-~~q~~~~~~~~~~-------------------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 536 (585)
T CHL00099 488 --GMVR-QWQQAFYGERYSH-------------------------SNMEEGAPDFVKLAEAYGIKGLRI---KSRKDLKS 536 (585)
T ss_pred --hHHH-HHHHHhcCCCccc-------------------------ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHH
Confidence 2221 1111101111100 000001246677899999998866 88999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++++.+ .++|++|+|++...
T Consensus 537 al~~a~~--~~~p~liev~v~~~ 557 (585)
T CHL00099 537 SLKEALD--YDGPVLIDCQVIED 557 (585)
T ss_pred HHHHHHh--CCCCEEEEEEECCC
Confidence 9999987 68999999999753
No 113
>PRK07064 hypothetical protein; Provisional
Probab=99.43 E-value=3.5e-13 Score=148.95 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=96.3
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+ +.
T Consensus 405 g~mG~~lpaAiGa~lA~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~y--------------g~ 464 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGP----GRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGY--------------GV 464 (544)
T ss_pred CccccccchhhhhhhhCc----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChh--------------HH
Confidence 889999999999999964 89999999999999 56678999999999999999999853 22
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
+. ..++...... ....++-.+|+..++++||+++.++ ++.++|.+++++
T Consensus 465 ~~-~~~~~~~~~~---------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~ 513 (544)
T PRK07064 465 IR-NIQDAQYGGR---------------------------RYYVELHTPDFALLAASLGLPHWRV---TSADDFEAVLRE 513 (544)
T ss_pred HH-HHHHHhcCCc---------------------------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHH
Confidence 21 1111100000 0011222356778899999998767 899999999999
Q ss_pred HhccCCCCcEEEEEEeccc
Q 008493 187 VKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g 205 (563)
+.+ .++|++|+|.+...
T Consensus 514 a~~--~~~p~lIeV~~~~~ 530 (544)
T PRK07064 514 ALA--KEGPVLVEVDMLSI 530 (544)
T ss_pred HHc--CCCCEEEEEEcccc
Confidence 987 68999999998733
No 114
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.43 E-value=5e-13 Score=148.40 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=97.3
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.|
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y-------------- 478 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMALP----EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL-------------- 478 (574)
T ss_pred CccchhhHHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 45999999999999999975 88999999999999 66688999999999999999999853
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+... ++......+. ...+ ..+|+..++++||++..++ ++.++|.++
T Consensus 479 g~i~~~-q~~~~~~~~~---------------------------~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~a 527 (574)
T PRK07979 479 GMVKQW-QDMIYSGRHS---------------------------QSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESK 527 (574)
T ss_pred hHHHHH-HHHhcCCccc---------------------------cccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 322111 1100000000 0011 1256778899999998877 899999999
Q ss_pred HHHHhcc-CCCCcEEEEEEeccc
Q 008493 184 LEEVKNT-KTTGPVLIHVVTEKG 205 (563)
Q Consensus 184 ~~~a~~~-~~~~P~~I~v~t~~g 205 (563)
++++.+. +.++|++|+|.+.+.
T Consensus 528 l~~a~~~~~~~~p~lIeV~i~~~ 550 (574)
T PRK07979 528 LSEALEQVRNNRLVFVDVTVDGS 550 (574)
T ss_pred HHHHHhccCCCCcEEEEEEECCc
Confidence 9999761 137899999999753
No 115
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.43 E-value=4.9e-13 Score=148.64 Aligned_cols=130 Identities=15% Similarity=0.261 Sum_probs=96.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+++|.+ +++|||++|||+|+ ++.++|++|+++++|+++||.||+.+.+-...++
T Consensus 434 ~g~gsmG~~l~~aiGa~la~~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~----- 502 (578)
T PRK06112 434 RGLAGLGWGVPMAIGAKVARP----GAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAET----- 502 (578)
T ss_pred CCccccccHHHHHHHHHhhCC----CCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccc-----
Confidence 345899999999999999864 89999999999998 7789999999999999999999984332110000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
...+..+ ...++-.+++..++++||+++.++ ++.++|.++
T Consensus 503 ----------~~~~~~~---------------------------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~a 542 (578)
T PRK06112 503 ----------VKFGTHT---------------------------DACHFAAVDHAAIARACGCDGVRV---EDPAELAQA 542 (578)
T ss_pred ----------cccCCcc---------------------------ccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 0000000 000111235667799999998866 789999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|+|++.+..
T Consensus 543 l~~a~~--~~gp~lIev~~~~~~ 563 (578)
T PRK06112 543 LAAAMA--APGPTLIEVITDPSA 563 (578)
T ss_pred HHHHHh--CCCCEEEEEEcCccc
Confidence 999987 689999999997654
No 116
>PRK08266 hypothetical protein; Provisional
Probab=99.43 E-value=5.7e-13 Score=147.13 Aligned_cols=130 Identities=20% Similarity=0.282 Sum_probs=97.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|++ ..+++.+|.++++|+++||.||+.+.
T Consensus 400 ~~GsmG~~lp~aiGa~la~p----~~~vv~v~GDG~f~~--~~~eL~ta~~~~lpv~ivv~NN~~y~------------- 460 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVANP----DRPVVSITGDGGFMF--GVQELATAVQHNIGVVTVVFNNNAYG------------- 460 (542)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 35999999999999999864 899999999999995 45889999999999999999997432
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
.+ +..++...+..+ ...++..+|+..++++||+++.++ .+.++|.+++
T Consensus 461 -~~-~~~~~~~~~~~~---------------------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 508 (542)
T PRK08266 461 -NV-RRDQKRRFGGRV---------------------------VASDLVNPDFVKLAESFGVAAFRV---DSPEELRAAL 508 (542)
T ss_pred -HH-HHHHHHhcCCCc---------------------------ccCCCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 11 111111000000 001111246677899999998866 7899999999
Q ss_pred HHHhccCCCCcEEEEEEecccCC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++.+ .++|++|++.+.++..
T Consensus 509 ~~a~~--~~~p~liev~i~~~~~ 529 (542)
T PRK08266 509 EAALA--HGGPVLIEVPVPRGSE 529 (542)
T ss_pred HHHHh--CCCcEEEEEEecCCCC
Confidence 99986 6789999999987754
No 117
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.42 E-value=5.8e-13 Score=147.55 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=97.6
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
.-+.|+||+++|.|+|+++|.+ +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+.
T Consensus 410 ~~~~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~~~----------- 472 (563)
T PRK08527 410 SGGLGTMGYGLPAALGAKLAVP----DKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNFLG----------- 472 (563)
T ss_pred CCCcccccchHHHHHHHHHhCC----CCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCcch-----------
Confidence 3455999999999999999975 88999999999999 455679999999999999999998532
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
.+. ..++...+..|. ..++ ..+++.++++++|+++.++ ++.++|.
T Consensus 473 ---~i~-~~~~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~ 518 (563)
T PRK08527 473 ---MVR-QWQTFFYEERYS---------------------------ETDLSTQPDFVKLAESFGGIGFRV---TTKEEFD 518 (563)
T ss_pred ---hHH-HHHHhhcCCcee---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHH
Confidence 221 111100000000 0011 1246677899999998767 8899999
Q ss_pred HHHHHHhccCCCCcEEEEEEecccC
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++++.+ .++|++|+|.+.+..
T Consensus 519 ~al~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 519 KALKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHHHh--CCCCEEEEEEECCcc
Confidence 99999987 688999999998644
No 118
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.42 E-value=7.6e-13 Score=146.49 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +..+++.+|+++++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~------------- 473 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLFP----ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYG------------- 473 (557)
T ss_pred CCccccchHHHHHHHHHhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 46999999999999999865 89999999999999 666899999999999999999998432
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
.+....+. .....+. ..++..+|+..++++||+++.++ ++.++|.+++
T Consensus 474 -~~~~~~~~-~~~~~~~---------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 521 (557)
T PRK08199 474 -TIRMHQER-EYPGRVS---------------------------GTDLTNPDFAALARAYGGHGETV---ERTEDFAPAF 521 (557)
T ss_pred -HHHHHHHH-hcCCccc---------------------------cccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 22111000 0000000 01111246677899999998766 7899999999
Q ss_pred HHHhccCCCCcEEEEEEeccc
Q 008493 185 EEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++.+ .++|++|+|.+.+.
T Consensus 522 ~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 522 ERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHh--CCCCEEEEEEeCHH
Confidence 99987 68899999999754
No 119
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.42 E-value=4.4e-13 Score=148.14 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=98.5
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+
T Consensus 398 ~~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~------------- 458 (548)
T PRK08978 398 SGLGTMGFGLPAAIGAQVARP----DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRL------------- 458 (548)
T ss_pred CchhhhhchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc-------------
Confidence 345999999999999999974 89999999999999 55678999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+. ..++......|. ..++ -.+|+..++++||+++.++ .+.++|.+
T Consensus 459 -~~~~-~~~~~~~~~~~~---------------------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 506 (548)
T PRK08978 459 -GMVR-QWQQLFFDERYS---------------------------ETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEA 506 (548)
T ss_pred -HHHH-HHHHHHhCCcce---------------------------ecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 2221 111100000000 0011 1256778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+ .++|++|+|.+.+..
T Consensus 507 al~~a~~--~~~p~lIeV~id~~~ 528 (548)
T PRK08978 507 ALDTLLN--SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999987 689999999997544
No 120
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.42 E-value=5.7e-13 Score=147.80 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------- 478 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAMP----DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL-------------- 478 (572)
T ss_pred CcccccchhhHHHhhhhhCC----CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------
Confidence 45899999999999999975 89999999999999 66688999999999999999999853
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+. +.++...+..+. ...+ ..+|+.+++++||.+..++ ++.++|.++
T Consensus 479 ~~i~-~~q~~~~~~~~~---------------------------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~a 527 (572)
T PRK08979 479 GMVK-QWQDMIYQGRHS---------------------------HSYMDSVPDFAKIAEAYGHVGIRI---SDPDELESG 527 (572)
T ss_pred HHHH-HHHHHHhCCccc---------------------------ccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 2221 111110000000 0000 1246778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEeccc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++++.+. .++|++|+|.+.+.
T Consensus 528 l~~a~~~-~~~p~lIev~i~~~ 548 (572)
T PRK08979 528 LEKALAM-KDRLVFVDINVDET 548 (572)
T ss_pred HHHHHhc-CCCcEEEEEEeCCc
Confidence 9999862 37899999999753
No 121
>PLN02470 acetolactate synthase
Probab=99.42 E-value=5.8e-13 Score=148.11 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=98.3
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+
T Consensus 423 ~~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~y------------- 483 (585)
T PLN02470 423 GGLGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHL------------- 483 (585)
T ss_pred CccccccchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc-------------
Confidence 345999999999999999975 89999999999999 55688999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+... ++......+... .+ +. +.......+|+.+++++||+++.++ ++.++|.++
T Consensus 484 -g~i~~~-~~~~~~~~~~~~-----~~----~~----------~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~a 539 (585)
T PLN02470 484 -GMVVQW-EDRFYKANRAHT-----YL----GD----------PDAEAEIFPDFLKFAEGCKIPAARV---TRKSDLREA 539 (585)
T ss_pred -hHHHHH-HHHHhCCceeee-----ec----Cc----------cccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 222111 110000000000 00 00 0000001246778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|+|.+.+..
T Consensus 540 l~~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 540 IQKMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHHh--CCCCEEEEEEeCCcc
Confidence 999987 689999999997543
No 122
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.42 E-value=3.3e-13 Score=148.72 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=95.2
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |..++|.+|+++++|+++||.||+.+.+-...+.
T Consensus 401 ~~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~----- 469 (539)
T TIGR03393 401 PLWGSIGYTLPAAFGAQTACP----NRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHG----- 469 (539)
T ss_pred hhhhhhhhHHHHHHHHHhcCC----CCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecC-----
Confidence 456999999999999999865 89999999999999 6778999999999999999999985432100000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCce----EeeccCCCCHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY----YIGPVDGHNVDD 179 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~dG~d~~~ 179 (563)
....|. ++-.+|+.+++++||.+ +.++ ++.++
T Consensus 470 ------------~~~~~~-----------------------------~~~~~df~~la~a~G~~~~~~~~~v---~~~~e 505 (539)
T TIGR03393 470 ------------AEQRYN-----------------------------DIALWNWTHLPQALSLDPQSECWRV---SEAEQ 505 (539)
T ss_pred ------------CCCCcC-----------------------------cCCCCCHHHHHHHcCCCCccceEEe---ccHHH
Confidence 000000 11124566779999984 5656 88999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEecc
Q 008493 180 LVAILEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 180 l~~a~~~a~~~~~~~P~~I~v~t~~ 204 (563)
|.++++++.+ .++|++|++.+.+
T Consensus 506 l~~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 506 LADVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHHhc--cCCeEEEEEEcCc
Confidence 9999999987 6899999999864
No 123
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.41 E-value=8.6e-13 Score=146.38 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=97.9
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++||+++|||+|+ +..++|.+++++++|+++||.||+.|
T Consensus 405 ~~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~y------------- 465 (575)
T TIGR02720 405 NLFATMGVGVPGAIAAKLNYP----DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTY------------- 465 (575)
T ss_pred CCcchhhchHHHHHHHHHhCC----CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc-------------
Confidence 346999999999999999875 89999999999999 56688999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+.+. ++.. ...+. ..++-.+|+..++++||.++.++ ++.++|.++
T Consensus 466 -g~i~~~-~~~~-~~~~~---------------------------~~~~~~~df~~iA~a~G~~~~~v---~~~~el~~a 512 (575)
T TIGR02720 466 -GFIKDE-QEDT-NQPLI---------------------------GVDFNDADFAKIAEGVGAVGFRV---NKIEQLPAV 512 (575)
T ss_pred -HHHHHH-HHHh-CCCcc---------------------------cccCCCCCHHHHHHHCCCEEEEe---CCHHHHHHH
Confidence 222111 0000 00000 01122356778899999998866 789999999
Q ss_pred HHHHh--ccCCCCcEEEEEEecccC
Q 008493 184 LEEVK--NTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~--~~~~~~P~~I~v~t~~g~ 206 (563)
++++. + .++|++|++++.+..
T Consensus 513 l~~a~~~~--~~~p~liev~i~~~~ 535 (575)
T TIGR02720 513 FEQAKAIK--QGKPVLIDAKITGDR 535 (575)
T ss_pred HHHHHhhC--CCCcEEEEEEeCCCC
Confidence 99997 5 688999999998754
No 124
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.41 E-value=6.7e-13 Score=147.54 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=98.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.|
T Consensus 427 ~~~g~mG~~lpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~y------------- 487 (579)
T TIGR03457 427 MSFGNCGYAFPTIIGAKIAAP----DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQW------------- 487 (579)
T ss_pred CccccccchHHHHHhhhhhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcch-------------
Confidence 345999999999999999965 89999999999999 55588999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcccc-CCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS-GSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+.. .+....+..|. ..++-. +|+.+++++||.++.++ ++.++|.+
T Consensus 488 -g~i~~-~~~~~~~~~~~---------------------------~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~ 535 (579)
T TIGR03457 488 -GAEKK-NQVDFYNNRFV---------------------------GTELESELSFAGIADAMGAKGVVV---DKPEDVGP 535 (579)
T ss_pred -HHHHH-HHHHhhCCcce---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 22211 11000000000 001112 37778899999998877 89999999
Q ss_pred HHHHHhcc-CCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNT-KTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~-~~~~P~~I~v~t~~g~g 207 (563)
+++++.+. ..++|++|+|.+.+..+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99998752 24789999999986664
No 125
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.41 E-value=8.3e-13 Score=146.69 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=98.3
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+.
T Consensus 418 ~~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg------------ 479 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLG------------ 479 (572)
T ss_pred CCcccccchhHHHHHHHHhCC----CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchH------------
Confidence 356999999999999999975 88999999999999 555789999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+... +....+..+. ..++. .+|+..++++||.++.++ ++.++|.+
T Consensus 480 --~i~~~-q~~~~~~~~~---------------------------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~ 526 (572)
T PRK06456 480 --LVRQV-QDLFFGKRIV---------------------------GVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEK 526 (572)
T ss_pred --HHHHH-HHHhhCCCcc---------------------------cccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHH
Confidence 22111 1000000000 01111 246778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+ .++|++|+|.+.+..
T Consensus 527 al~~a~~--~~~p~lIev~v~~~~ 548 (572)
T PRK06456 527 SLKSAIK--EDIPAVIRVPVDKEE 548 (572)
T ss_pred HHHHHHh--CCCCEEEEEEeCccc
Confidence 9999986 689999999997533
No 126
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.41 E-value=7.8e-13 Score=146.87 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=97.7
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.|
T Consensus 420 ~~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y------------- 480 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGAL------------- 480 (574)
T ss_pred CCcchhhchHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc-------------
Confidence 355999999999999999975 89999999999999 66688999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+.. .++......+. ...+ ..+|+.+++++||.++.++ .+.++|.+
T Consensus 481 -~~i~~-~q~~~~~~~~~---------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 528 (574)
T PRK06466 481 -GMVRQ-WQDMQYEGRHS---------------------------HSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKP 528 (574)
T ss_pred -HHHHH-HHHHhcCCcee---------------------------ecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 22211 11100000000 0000 1246778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+. .++|++|++.+.+..
T Consensus 529 al~~a~~~-~~~p~lIev~i~~~~ 551 (574)
T PRK06466 529 KLEEAFAM-KDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCcc
Confidence 99999862 278999999997533
No 127
>PLN02573 pyruvate decarboxylase
Probab=99.40 E-value=6.2e-13 Score=147.32 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=95.5
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+.++|.+|+++++|+++||.||+.|.+-...+
T Consensus 424 ~~~~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~----- 492 (578)
T PLN02573 424 QMQYGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIH----- 492 (578)
T ss_pred ecchhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeec-----
Confidence 3456999999999999999975 89999999999999 677889999999999999999998543210000
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcC-----ceEeeccCCCCH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG-----LYYIGPVDGHNV 177 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-----~~~~~~~dG~d~ 177 (563)
+..|. +.-.+++..++++|| +++.++ ++.
T Consensus 493 --------------~~~~~-----------------------------~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~ 526 (578)
T PLN02573 493 --------------DGPYN-----------------------------VIKNWNYTGLVDAIHNGEGKCWTAKV---RTE 526 (578)
T ss_pred --------------ccCcc-----------------------------ccCCCCHHHHHHHhcCcCCceeEEEe---cCH
Confidence 00000 001235567789985 777767 789
Q ss_pred HHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 178 DDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 178 ~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++|.++++++.+...++|++|+|.+.+.
T Consensus 527 ~eL~~al~~a~~~~~~~p~lieV~v~~~ 554 (578)
T PLN02573 527 EELIEAIATATGEKKDCLCFIEVIVHKD 554 (578)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCcC
Confidence 9999999999731258899999998643
No 128
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.39 E-value=8.7e-13 Score=147.40 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=98.5
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|.+|+++++|+++||.||+.+
T Consensus 443 ~~~~G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~------------ 504 (612)
T PRK07789 443 SGGLGTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNL------------ 504 (612)
T ss_pred CCCcccccchhhhHHhhhccCC----CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCch------------
Confidence 3456999999999999999975 89999999999999 66688999999999999999999853
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+. +.++......+.. .++. ..+...+|+.++++++|+++.++ ++.++|.+
T Consensus 505 --g~i~-~~q~~~~~~~~~~----------------~~~~------~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~ 556 (612)
T PRK07789 505 --GMVR-QWQTLFYEERYSN----------------TDLH------THSHRIPDFVKLAEAYGCVGLRC---EREEDVDA 556 (612)
T ss_pred --HHHH-HHHHHhhCCCcce----------------eecC------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 2221 1111111100000 0000 00001246778899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++++.+. .++|++|+|.+.+.
T Consensus 557 al~~a~~~-~~~p~lIev~i~~~ 578 (612)
T PRK07789 557 VIEKARAI-NDRPVVIDFVVGKD 578 (612)
T ss_pred HHHHHHhc-CCCcEEEEEEECCc
Confidence 99999862 37899999999753
No 129
>PRK08617 acetolactate synthase; Reviewed
Probab=99.39 E-value=7.9e-13 Score=146.25 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=98.5
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.. +++|||++|||+|+ |...+|.+|.++++|+++||.||+.+.
T Consensus 411 ~~~g~mG~~lpaaiGa~la~p----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~------------ 472 (552)
T PRK08617 411 NGMQTLGVALPWAIAAALVRP----GKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYN------------ 472 (552)
T ss_pred CccccccccccHHHhhHhhcC----CCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccc------------
Confidence 356899999999999999864 89999999999999 666889999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+... +... | . .....++-.+|+.+++++||+++.++ ++.++|.++
T Consensus 473 --~~~~~-~~~~----~-----------~-------------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 518 (552)
T PRK08617 473 --MVEFQ-EEMK----Y-----------G-------------RSSGVDFGPVDFVKYAESFGAKGLRV---TSPDELEPV 518 (552)
T ss_pred --hHHHH-HHhh----c-----------C-------------CcccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 22100 0000 0 0 00001111356778899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
++++.+ .++|++|++.+.+...
T Consensus 519 l~~a~~--~~~p~liev~~~~~~~ 540 (552)
T PRK08617 519 LREALA--TDGPVVIDIPVDYSDN 540 (552)
T ss_pred HHHHHh--CCCcEEEEEEeccccc
Confidence 999986 6889999999976543
No 130
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.39 E-value=9.5e-13 Score=146.61 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=97.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+
T Consensus 417 ~~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYL-------------- 476 (591)
T ss_pred ccccccchhhhHHhhhhhCC----CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45999999999999999965 89999999999999 55678999999999999999999852
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
|.+.. .+.......+.. ..+ ..+. ..-.+...+|+..++++||.++.++ ++.++|.+++
T Consensus 477 g~i~~-~~~~~~~~~~~~-----~~~--------~~~~----~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 535 (591)
T PRK11269 477 GLIRQ-AQRAFDMDYCVQ-----LAF--------ENIN----SPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAL 535 (591)
T ss_pred hHHHH-HHHHhccCccce-----eec--------cccc----cccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 32211 110000000000 000 0000 0000001256778899999998877 8999999999
Q ss_pred HHHhcc--CCCCcEEEEEEecccC
Q 008493 185 EEVKNT--KTTGPVLIHVVTEKGR 206 (563)
Q Consensus 185 ~~a~~~--~~~~P~~I~v~t~~g~ 206 (563)
+++.+. +.++|++|+|.+.+..
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~~~ 559 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILERVT 559 (591)
T ss_pred HHHHhhcccCCCcEEEEEEecccc
Confidence 998731 2578999999997543
No 131
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.39 E-value=3.5e-11 Score=139.05 Aligned_cols=253 Identities=18% Similarity=0.118 Sum_probs=170.0
Q ss_pred CCeeecccchHHHHHHHHHHh---------hCCCeeEEeechhhHHHHHHHHHHHhccCCC--C---eEEEEeCCCCCCC
Q 008493 281 TRCFDVGIAEQHAVTFAAGLA---------CEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL--P---VRFAMDRAGLVGA 346 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a---------~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~--p---v~~v~~~~G~~g~ 346 (563)
+-+++++++|.-++.++.|++ +.|.+.+++...+.+.++.|.++ ++++... . |++++++.|. .
T Consensus 74 ~i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~-~~n~~G~~~~GG~v~v~gDDpg~--~ 150 (1159)
T PRK13030 74 DIRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALK-HGNAYGSSPHGGVLVVAGDDHGC--V 150 (1159)
T ss_pred ceEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHH-HHHhhcCCCCCcEEEEEecCCCC--c
Confidence 378999999999999999999 77788899999999999999995 5565544 2 5555566663 2
Q ss_pred CCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCCC--------C----ccCCCCCC
Q 008493 347 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNGI--------G----VELPPGNK 411 (563)
Q Consensus 347 ~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~~--------~----~~~p~~~~ 411 (563)
...+.|+++...... ++-|+.|+|++|++++.+++++ ...-||.++....... . ...|.
T Consensus 151 SSq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--- 224 (1159)
T PRK13030 151 SSSMPHQSDFALIAW---HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPE--- 224 (1159)
T ss_pred cCcCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---
Confidence 233444444434444 4459999999999999999987 4567998876332100 0 00111
Q ss_pred CCccc-----------------------------------cCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCC----
Q 008493 412 GIPLE-----------------------------------VGKGRILIEGERVALLGYGTAVQSCLAASALLESNG---- 452 (563)
Q Consensus 412 ~~~~~-----------------------------------~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~G---- 452 (563)
++..+ +.+..+-.++.++.||++|.....++||.+.|...+
T Consensus 225 ~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~ 304 (1159)
T PRK13030 225 DFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLR 304 (1159)
T ss_pred ccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCccccc
Confidence 11111 111111012357999999999999999998874433
Q ss_pred -CceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHH
Q 008493 453 -LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQL 531 (563)
Q Consensus 453 -i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll 531 (563)
+.++|+.+...||||.+.++++++..+.|+|||+... =+-..|...+..... ..+...+|..+.-+ . .++
T Consensus 305 ~lgirilKvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~~G---~--pll 375 (1159)
T PRK13030 305 AAGIRIYKVGLSWPLEPTRLREFADGLEEILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDEDG---A--PLL 375 (1159)
T ss_pred ccCccEEEeCCccCCCHHHHHHHHhcCCEEEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECCCC---C--cCC
Confidence 2478889989999999999999999999999999863 255556666654321 11233455433111 0 012
Q ss_pred HH-cCCCHHHHHHHHHHHhcc
Q 008493 532 AQ-AGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 532 ~~-~gl~~~~I~~~i~~~~~~ 551 (563)
.. ..|+++.|.+++.+.++.
T Consensus 376 p~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 376 SELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred CCcCCcCHHHHHHHHHHHHhc
Confidence 22 348999999999887654
No 132
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.39 E-value=1.3e-12 Score=145.10 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=97.3
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
-+.|+||+++|.|+|+++|.+ +++|||++|||+|+ +...+|++|.++++|+++||.||+.+
T Consensus 421 ~~~g~mG~glpaAiGaala~p----~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~------------- 481 (571)
T PRK07710 421 GGLGTMGFGLPAAIGAQLAKP----DETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEAL------------- 481 (571)
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchH-------------
Confidence 345999999999999999964 89999999999999 45567999999999999999999853
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+... ++......|. ..++ -.+++..++++||+++.++ ++.++|.+
T Consensus 482 -~~i~~~-~~~~~~~~~~---------------------------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~ 529 (571)
T PRK07710 482 -GMVRQW-QEEFYNQRYS---------------------------HSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKE 529 (571)
T ss_pred -HHHHHH-HHHHhCCcce---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 222111 1000000000 0011 1246677899999998877 88999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+ .++|++|+|.+....
T Consensus 530 al~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999987 689999999997543
No 133
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.38 E-value=9.7e-13 Score=145.70 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+ |+..+|.+|.++++|+++||.||+.|.
T Consensus 415 ~~~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~------------ 476 (566)
T PRK07282 415 GGLGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLG------------ 476 (566)
T ss_pred CccccccchhhHhheeheecC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCch------------
Confidence 356999999999999999975 89999999999999 666889999999999999999998533
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+ +..++......+. ..++ -.+|+..++++||+++.++ ++.++|.+
T Consensus 477 --~i-~~~q~~~~~~~~~---------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 523 (566)
T PRK07282 477 --MV-RQWQESFYEGRTS---------------------------ESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQ 523 (566)
T ss_pred --HH-HHHHHHHhCCCcc---------------------------cccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 22 1111110000000 0011 1246778899999998877 88999999
Q ss_pred HHHHHhccCCCCcEEEEEEeccc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++.. . .++|++|+|.+.+.
T Consensus 524 al~~~-~--~~~p~lIeV~v~~~ 543 (566)
T PRK07282 524 DLEVI-T--EDVPMLIEVDISRK 543 (566)
T ss_pred HHHHh-c--CCCCEEEEEEeCCc
Confidence 99753 3 58999999999753
No 134
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.38 E-value=3.8e-11 Score=132.36 Aligned_cols=413 Identities=16% Similarity=0.153 Sum_probs=258.8
Q ss_pred CCCchhhHHHHHHHHhhhhcCCC---CcE--EEEEcccccc-cchhHHHHHhhcccC---CCEEEEEeCCCCcccCcccC
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRK---NNV--VAVIGDGAMT-AGQAYEAMNNAGYLD---SDMIVILNDNKQVSLPTATL 97 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~---~~v--v~~~GDG~~~-~G~~~Eal~~a~~~~---~pli~iv~nN~~~s~~t~~~ 97 (563)
+|+=.--|...|.+.|......+ .+| +.+.||.+++ +|.+.|.+|...... .+.+-||.||+ +..+|...
T Consensus 298 SHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQ-iGFTTsp~ 376 (906)
T COG0567 298 SHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQ-IGFTTSPA 376 (906)
T ss_pred chhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecC-CCCCCCcc
Confidence 67777789999999886544322 234 5899999998 899999999987654 88999999998 66666555
Q ss_pred CCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCH
Q 008493 98 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNV 177 (563)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~ 177 (563)
++....|. ..+++..+.+.. .++|.|+
T Consensus 377 ~sRSt~Y~----------------------------------------------------TDvAKm~~aPif-HVN~DDP 403 (906)
T COG0567 377 DARSTPYC----------------------------------------------------TDVAKMIEAPIF-HVNADDP 403 (906)
T ss_pred cccCCCCC----------------------------------------------------CChhhccCCcee-ecccCCc
Confidence 54444332 233566676766 8899999
Q ss_pred HHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc---------ccccCCCC-----------------------
Q 008493 178 DDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA---------DKYHGVAK----------------------- 223 (563)
Q Consensus 178 ~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~---------~~~h~~~~----------------------- 223 (563)
+++..+.+.|.+. +-.++++|.+.+++-+|+-..++.. -+-|-...
T Consensus 404 EAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 404 EAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 9987777655542 2467999999999988874332110 00111100
Q ss_pred ---------C----------------CCC--CCcc--------------------CCC--------------------Cc
Q 008493 224 ---------F----------------DPA--TGKQ--------------------FKS--------------------SA 236 (563)
Q Consensus 224 ---------f----------------~~~--~~~~--------------------~~~--------------------~~ 236 (563)
| ... .+.+ +++ ..
T Consensus 484 ~~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~ 563 (906)
T COG0567 484 DYRDALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGG 563 (906)
T ss_pred HHHHHhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccc
Confidence 0 000 0000 000 01
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-H--------------HHHHhCC--C--CeeecccchHHHHHHH
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-N--------------LFLRRFP--T--RCFDVGIAEQHAVTFA 297 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-~--------------~~~~~~p--~--r~i~~gi~E~~~~~~a 297 (563)
....|..|-.-+...++.....+.+-+.|.++++-. + .+....+ . .++|.+++|.+++|.=
T Consensus 564 ~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFE 643 (906)
T COG0567 564 QGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFE 643 (906)
T ss_pred cccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhh
Confidence 122333333444445566667788888888766521 0 0111111 1 3579999999999999
Q ss_pred HHHhhCCCe--eEEee-chhhH---HHHHHHHHHHhc---cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcC--CCc
Q 008493 298 AGLACEGLK--PFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACL--PNM 366 (563)
Q Consensus 298 ~G~a~~G~~--~~~~~-~~~f~---~~a~dqi~~~a~---~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~--p~~ 366 (563)
.|.|..--+ .+++- |++|. +..+||+++..- ...+.+++..+|+. -+.||.|+....-.+++.. -|+
T Consensus 644 YGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy--EGQGPEHSSaRlER~LQLcaE~Nm 721 (906)
T COG0567 644 YGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY--EGQGPEHSSARLERFLQLCAENNM 721 (906)
T ss_pred hhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCC--CCCCCcCccchhHHHHHhhHHhCC
Confidence 999998544 34444 88886 678899864432 23556777667743 3468999986655555543 489
Q ss_pred EEEecCCHHHHHHHHHH-HHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCceE-EEee----C--CcEEEEEechhH
Q 008493 367 VVMAPSDEAELFHMVAT-AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIE----G--ERVALLGYGTAV 438 (563)
Q Consensus 367 ~v~~P~~~~e~~~~l~~-a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~-~l~~----g--~dv~iv~~G~~~ 438 (563)
+|..|++|.+.+.+++. ++....+|.++..++..+....... ....+.-++.+ ++.+ + -..+++|+|-+.
T Consensus 722 qV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S--~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKvy 799 (906)
T COG0567 722 QVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS--SLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKVY 799 (906)
T ss_pred EEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC--chhhhchhhhhhhhccccccccceeeEEeeccchH
Confidence 99999999999999984 4445678999998887643211100 00011111111 1111 1 245677878777
Q ss_pred HHHHHHHHHHHhCCC-ceEEeeccccccCcHHHHHHHhccC----CEEEEEeCCCCCChHHHHHHHH
Q 008493 439 QSCLAASALLESNGL-RLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi-~v~vi~~~~l~Pf~~~~i~~~~~~~----~~vvvvE~~~~gg~g~~v~~~l 500 (563)
....+.. ++.|. ++-++.+.+|.|||.+.+.+.+.++ .-|++-|+...-|-...+...+
T Consensus 800 ydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l 863 (906)
T COG0567 800 YDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHL 863 (906)
T ss_pred HHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHHHHHHH
Confidence 6544443 34443 6889999999999999998887665 4677888876433333444444
No 135
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.38 E-value=2.4e-12 Score=128.51 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=111.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCC-CcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~-~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
-...+|.+++.|.|+++|.+..+++ ..|++++|||++..+-+ |+|+.|+.+++|+++||.||+ ++..|..|.++..+
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~-~~~~TGgQ~S~~Tp 144 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNE-AYMNTGIQRSSSTP 144 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCe-eeecCCCCCCCCCc
Confidence 3588899999999999998877654 45666999999987664 999999999999999999999 78888888888777
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.|...+. .+ .+... -..|...++.++|..++..++..++.++.++
T Consensus 145 ~ga~t~t------sp---------------~G~~~--------------~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~ 189 (300)
T PRK11864 145 YGAWTTT------TP---------------GGKRE--------------HKKPVPDIMAAHKVPYVATASIAYPEDFIRK 189 (300)
T ss_pred CCCcccc------CC---------------CCCcC--------------CCCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 6642110 00 00000 0012335588999998888888899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCCc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
+++|.+ .++|.+|++++..-.++
T Consensus 190 i~~A~~--~~Gps~I~~~spC~~~~ 212 (300)
T PRK11864 190 LKKAKE--IRGFKFIHLLAPCPPGW 212 (300)
T ss_pred HHHHHh--CCCCEEEEEeCCCCCCC
Confidence 999997 68999999998755444
No 136
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.38 E-value=1.6e-12 Score=144.32 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=96.9
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++| . +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.+.
T Consensus 420 ~~~~gsmG~glpaaiGa~la-~----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~----------- 481 (569)
T PRK09259 420 CGTWGVMGIGMGYAIAAAVE-T----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY----------- 481 (569)
T ss_pred CCCCccccccHHHHHHHHhc-C----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-----------
Confidence 33569999999999999998 2 78899999999999 566789999999999999999998420
Q ss_pred CchhhHHHHhhhhcC-hhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 103 PVGALSSALSRLQSN-RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
+..++.... ..+ ...++. .+|+.+++++||+++.++ ++.++|
T Consensus 482 ------~~~~~~~~~~~~~---------------------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el 525 (569)
T PRK09259 482 ------RGDDVNLSGAGDP---------------------------SPTVLVHHARYDKMMEAFGGVGYNV---TTPDEL 525 (569)
T ss_pred ------HHHHHHhhcCCCc---------------------------cccccCCCCCHHHHHHHCCCeEEEE---CCHHHH
Confidence 000000000 000 000111 346778899999998877 899999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
.++++++.+ .++|++|+|.+.+..+
T Consensus 526 ~~al~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 526 RHALTEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCC
Confidence 999999987 6899999999986554
No 137
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.38 E-value=1.4e-12 Score=145.10 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=96.3
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+ +...+|.+|.++++|+++||.||+.+
T Consensus 417 ~~gsmG~~lpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~-------------- 476 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAKP----DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTL-------------- 476 (586)
T ss_pred CccccccchhHHHhhhhhcC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCch--------------
Confidence 45899999999999999964 78999999999999 55578999999999999999999853
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
+.+.+. ++......+.. .++ -..|+.++++++|.++.++ ++.++|.++
T Consensus 477 g~~~~~-~~~~~~~~~~~---------------------------~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~a 525 (586)
T PRK06276 477 GMVYQW-QNLYYGKRQSE---------------------------VHLGETPDFVKLAESYGVKADRV---EKPDEIKEA 525 (586)
T ss_pred HHHHHH-HHHHhCCCccc---------------------------ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 222111 11100000000 011 1246677899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEeccc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++++.+ .++|++|+|.+.+.
T Consensus 526 l~~a~~--~~~p~lIeV~i~~~ 545 (586)
T PRK06276 526 LKEAIK--SGEPYLLDIIIDPA 545 (586)
T ss_pred HHHHHh--CCCCEEEEEEeccc
Confidence 999986 68999999999753
No 138
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.37 E-value=1.8e-12 Score=143.74 Aligned_cols=131 Identities=24% Similarity=0.291 Sum_probs=96.8
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|+|+|+++|.+ +++|||++|||+|++ ...++.+|.++++|+++||.||+.+.+
T Consensus 415 ~~~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~--~~~eL~ta~~~~lpvi~vV~NN~~~g~---------- 478 (564)
T PRK08155 415 SGGLGTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMM--NIQEMATAAENQLDVKIILMNNEALGL---------- 478 (564)
T ss_pred CCCcccccchhHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCcccc----------
Confidence 3355999999999999999975 889999999999995 456799999999999999999985332
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
+. ..++......+. ..++ -.+|+.+++++||+++.++ .+.++|.
T Consensus 479 ----~~-~~q~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~ 523 (564)
T PRK08155 479 ----VH-QQQSLFYGQRVF---------------------------AATYPGKINFMQIAAGFGLETCDL---NNEADPQ 523 (564)
T ss_pred ----cH-HHHHHhcCCCee---------------------------eccCCCCCCHHHHHHHCCCeEEEe---CCHHHHH
Confidence 11 001100000000 0011 1245677899999998866 7899999
Q ss_pred HHHHHHhccCCCCcEEEEEEecccC
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++++.+ .++|++|+|.+.+..
T Consensus 524 ~al~~a~~--~~~p~lIeV~~~~~~ 546 (564)
T PRK08155 524 AALQEAIN--RPGPALIHVRIDAEE 546 (564)
T ss_pred HHHHHHHh--CCCCEEEEEEeCCCc
Confidence 99999987 688999999997533
No 139
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.37 E-value=1.8e-12 Score=143.44 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=94.8
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|. +++||+++|||+|+ |+.++|.+|+++++|+++||.||+.+.. . .
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~-~-~-------- 477 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR-G-D-------- 477 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh-h-h--------
Confidence 4599999999999999982 78999999999999 5667899999999999999999984310 0 0
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
++......+ ...++ -.+++.+++++||++..++ ++.++|.++
T Consensus 478 -------~~~~~~~~~---------------------------~~~~~~~~~df~~la~a~G~~~~~v---~~~~el~~a 520 (554)
T TIGR03254 478 -------DVNVVGADP---------------------------APTVLVHGARYDKMMKAFGGVGYNV---TTPDELKAA 520 (554)
T ss_pred -------hhhhcCCCC---------------------------CccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 000000000 00011 1246678899999998877 899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALA--SGKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHh--CCCCEEEEEEECCCc
Confidence 999986 688999999997554
No 140
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.37 E-value=1.4e-12 Score=144.36 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=96.1
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+|+. ...+|.+|.++++|+++||.||+.+.
T Consensus 410 ~~g~mG~~l~aaiGa~la~~----~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAKP----ESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhCC----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45899999999999999864 799999999999995 44689999999999999999998532
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.+.. .++......+. ..+.. .+|+..++++||+++.++ ++.++|.++
T Consensus 471 -~~~~-~q~~~~~~~~~---------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~a 518 (558)
T TIGR00118 471 -MVRQ-WQELFYEERYS---------------------------HTHMGSLPDFVKLAEAYGIKGIRI---EKPEELDEK 518 (558)
T ss_pred -HHHH-HHHHhcCCcee---------------------------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 2211 11100000000 00111 246677899999998866 789999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+ .++|++|++++.+..
T Consensus 519 l~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 519 LKEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHh--CCCCEEEEEEeCCcc
Confidence 999987 689999999997533
No 141
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.36 E-value=2.2e-12 Score=126.39 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=93.9
Q ss_pred CCCCCchhhHHHHHHHHhh-hhcCCCCcEEEEEcccccc-cchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 25 GTGHSSTSISAGLGMAVGR-DLKGRKNNVVAVIGDGAMT-AGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~-~~~~~~~~vv~~~GDG~~~-~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
+.|+||+++|.|+|+++|. +...++++|||++|||+++ .| ...+.++.++++|+++||.||+.+.+ +..|.....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~-~~~q~~~~~ 138 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSN-TGGQRSGAT 138 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccC-CCCCCCCCC
Confidence 4599999999999999881 1112489999999999985 34 35677788899999999999985442 222221100
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
..+.. .... ....++-.+|+.++++++|+.+++.+.-.+++++.+
T Consensus 139 ~~g~~-------~~~~----------------------------~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~ 183 (237)
T cd02018 139 PLGAD-------SKMA----------------------------PAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLK 183 (237)
T ss_pred cCCCc-------cccc----------------------------CCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHH
Confidence 00000 0000 000011124667789999999876333378999999
Q ss_pred HHHHHhccCCCCcEEEEEEecc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~ 204 (563)
+++++.+ +.++|++|++.+..
T Consensus 184 al~~al~-~~~GP~lI~v~i~c 204 (237)
T cd02018 184 VVKEAIS-RTDGPTFIHAYTPC 204 (237)
T ss_pred HHHHHHh-cCCCCEEEEEeCCC
Confidence 9999974 15789999999653
No 142
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.35 E-value=1.4e-12 Score=144.92 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=94.4
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
|.|.||+++|+|+|+++| . +++|||++|||+|++ ...++.+++++++|+++||.||+.+.+-......
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~--~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~----- 490 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLH--DLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQP----- 490 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhhc--CcHHHHhhcccCCCeEEEEEECCCCccccCCCCC-----
Confidence 457899999999999998 4 789999999999994 4467999999999999999999854421000000
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+. ..|. ..+....-..|+..++++||+++.++ ++.++|.+++
T Consensus 491 -------~~----~~~~------------------------~~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al 532 (568)
T PRK07449 491 -------EE----EPVF------------------------ERFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEAL 532 (568)
T ss_pred -------CC----cchh------------------------hHhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHH
Confidence 00 0000 00000011246778899999988766 8999999999
Q ss_pred HHHhccCCCCcEEEEEEeccc
Q 008493 185 EEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g 205 (563)
+++.+ .++|++|+|.+.+.
T Consensus 533 ~~a~~--~~~p~lIev~id~~ 551 (568)
T PRK07449 533 ADALP--TPGLTVIEVKTNRS 551 (568)
T ss_pred HHHhc--CCCCEEEEEeCChh
Confidence 99986 68999999998643
No 143
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=4e-12 Score=141.36 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=96.9
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+++|.+ +++|||++|||+|+ +..++|.+|.++++|+++||.||+.+.
T Consensus 418 ~~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~~------------ 479 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFLG------------ 479 (574)
T ss_pred CCcccccchhHHHHHHHhhcC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchhH------------
Confidence 356999999999999999964 88999999999999 556889999999999999999998532
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
.+. +.++......+. .... -.+++..++++||+++.++ ++.++|..
T Consensus 480 --~i~-~~q~~~~~~~~~---------------------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~ 526 (574)
T PRK06882 480 --MVK-QWQDLIYSGRHS---------------------------QVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEE 526 (574)
T ss_pred --HHH-HHHHHhcCCccc---------------------------ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHH
Confidence 221 111100000000 0000 0245667899999998877 89999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+++++.+. .++|++|+|.+.+..
T Consensus 527 al~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 527 KLTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEecCcc
Confidence 99999862 378999999997544
No 144
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.35 E-value=3.5e-12 Score=140.42 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=92.7
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.|+||+++|.|+|+++|.+ +++|||++|||+++++ .+++++|.++++|+++||.||+.+.+
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~------------- 466 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGA------------- 466 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHH-------------
Confidence 5999999999999999964 7899999999999954 58899999999999999999984322
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 185 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~ 185 (563)
+ +..++...... ..+ .++-..++..++++||+++..+ ++.+++.++++
T Consensus 467 -~-~~~~~~~~~~~-------------~~~--------------~~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~al~ 514 (530)
T PRK07092 467 -L-RWFAPVFGVRD-------------VPG--------------LDLPGLDFVALARGYGCEAVRV---SDAAELADALA 514 (530)
T ss_pred -H-HHHHHhhCCCC-------------CCC--------------CCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 1 11111000000 000 0111235567799999998766 68999999999
Q ss_pred HHhccCCCCcEEEEEEec
Q 008493 186 EVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 186 ~a~~~~~~~P~~I~v~t~ 203 (563)
++.+ .++|++|++.++
T Consensus 515 ~a~~--~~~p~liev~~d 530 (530)
T PRK07092 515 RALA--ADGPVLVEVEVA 530 (530)
T ss_pred HHHh--CCCCEEEEEEcC
Confidence 9986 689999999873
No 145
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.35 E-value=2.4e-12 Score=142.71 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=94.8
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
.-+.|+||+++|+|+|+++|.+ +++|||++|||+|+++...+++++|+++++|+++||.||+.|.+
T Consensus 426 ~~~~gsmG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~---------- 491 (569)
T PRK08327 426 DGSAGGLGWALGAALGAKLATP----DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLA---------- 491 (569)
T ss_pred CCCCCCCCcchHHHHHHhhcCC----CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccccc----------
Confidence 3356999999999999999854 89999999999999876555799999999999999999974332
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhcc-ccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
+. ..+......++... . ... ...++ -.+|+..++++||+.+.++ ++.++|.
T Consensus 492 ----~~-~~~~~~~~~~~~~~------~--------~~~------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~ 543 (569)
T PRK08327 492 ----VK-EAVLEVYPEGYAAR------K--------GTF------PGTDFDPRPDFAKIAEAFGGYGERV---EDPEELK 543 (569)
T ss_pred ----ch-hHHhhhCccccccc------c--------ccc------ccccCCCCCCHHHHHHhCCCCceEe---CCHHHHH
Confidence 10 00000000000000 0 000 00001 1235667899999987766 7999999
Q ss_pred HHHHHHhcc--CCCCcEEEEEEec
Q 008493 182 AILEEVKNT--KTTGPVLIHVVTE 203 (563)
Q Consensus 182 ~a~~~a~~~--~~~~P~~I~v~t~ 203 (563)
.+++++.+. +.++|++|++.+.
T Consensus 544 ~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 544 GALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcc
Confidence 999888752 1267999999874
No 146
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.34 E-value=4.3e-12 Score=141.26 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=97.4
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|.+ +++|||++|||+|+. ...++.+|.++++|+++||.||+.+
T Consensus 432 ~~~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~--~~~el~Ta~~~~lpv~ivV~NN~~y------------- 492 (588)
T PRK07525 432 GSFGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGI--SMNEVMTAVRHNWPVTAVVFRNYQW------------- 492 (588)
T ss_pred ccccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhc--cHHHHHHHHHhCCCeEEEEEeCchh-------------
Confidence 356999999999999999975 899999999999995 4577999999999999999999843
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+.+... +....+..+. ..++- .+|+..+++++|+++.++ ++.++|.+
T Consensus 493 -~~~~~~-~~~~~~~~~~---------------------------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 540 (588)
T PRK07525 493 -GAEKKN-QVDFYNNRFV---------------------------GTELDNNVSYAGIAEAMGAEGVVV---DTQEELGP 540 (588)
T ss_pred -HHHHHH-HHHHhCCCcc---------------------------cccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 222111 1000000000 00110 146677899999998866 78999999
Q ss_pred HHHHHhcc-CCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNT-KTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~-~~~~P~~I~v~t~~g~g 207 (563)
+++++.+. +.++|++|+|.+.+..+
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 99998763 13589999999986654
No 147
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.33 E-value=2.2e-12 Score=128.20 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=98.1
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
+.+|.++|+|+|+++|.+ +++|||++|||+++. +..+++.+|+++++|+++||.||+.+.+ |..|.++....+.
T Consensus 60 ~~mG~alp~AiGaklA~p----d~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~-t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKATNP----ELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGL-TKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhh-hcceecCCCCCCc
Confidence 668999999999999864 899999999999872 2247899999999999999999984443 3333332211111
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
-.+ ... .......+|+..+++++|..++....-.+++++.+++++
T Consensus 134 ~~~----------------------~~p-------------~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KTP----------------------TQP-------------WGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred ccc----------------------cCC-------------CCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 000 000 000000135667799999998875445799999999999
Q ss_pred HhccCCCCcEEEEEEecccCC
Q 008493 187 VKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g~g 207 (563)
|.+ .++|++|++.+..-..
T Consensus 179 Al~--~~Gp~lIeV~~pC~~~ 197 (280)
T PRK11869 179 AIK--HKGLAIVDIFQPCVSF 197 (280)
T ss_pred HHh--CCCCEEEEEECCCCCC
Confidence 998 6899999999875543
No 148
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.32 E-value=4.5e-12 Score=139.35 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=94.0
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+++|. .+++|+++|||+|+ |+.++|.+|.++++|+++||.||+.+.+-...+
T Consensus 400 ~~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~------ 466 (535)
T TIGR03394 400 GYYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQ------ 466 (535)
T ss_pred CccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhc------
Confidence 35599999999999999995 35678899999999 677889999999999999999998543211000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
. ...|+ ++-.+|+.+++++||.+..++ ++.++|.++
T Consensus 467 ---------~---~~~~~-----------------------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 502 (535)
T TIGR03394 467 ---------P---ESAFN-----------------------------DLDDWRFADMAAGMGGDGVRV---RTRAELAAA 502 (535)
T ss_pred ---------c---CCCcc-----------------------------cCCCCCHHHHHHHcCCCceEe---CCHHHHHHH
Confidence 0 00000 111245667799999998877 889999999
Q ss_pred HHHHhccCCCCcEEEEEEecccC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++++.+. .++|++|++.+.+..
T Consensus 503 l~~a~~~-~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 503 LDKAFAT-RGRFQLIEAMLPRGV 524 (535)
T ss_pred HHHHHhc-CCCeEEEEEECCccc
Confidence 9998752 355899999986543
No 149
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.32 E-value=1.2e-10 Score=134.23 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=169.6
Q ss_pred CCeeecccchHHHHHHH---------HHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCC--C---eEEEEeCCCCCCC
Q 008493 281 TRCFDVGIAEQHAVTFA---------AGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL--P---VRFAMDRAGLVGA 346 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a---------~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~--p---v~~v~~~~G~~g~ 346 (563)
+-+++.+++|.-++.++ .|++..|.+.+++...+.+.++.|.++ ++.+... . |++++++.|. .
T Consensus 82 ~i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~-~~n~~G~~~~GGvv~v~gDDpg~--~ 158 (1165)
T PRK09193 82 DIVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFR-HANAAGTSPHGGVLALAGDDHAA--K 158 (1165)
T ss_pred ceEEeeccCHHHHHHHHhhhcccccccceeeccceEEEecCcCCccccHhHHH-HHHhhcCCCCCcEEEEEecCCCC--c
Confidence 37899999999999999 666889999999999999999999995 5555544 2 5555566663 2
Q ss_pred CCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCCC------------CccCCCCCC
Q 008493 347 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNGI------------GVELPPGNK 411 (563)
Q Consensus 347 ~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~~------------~~~~p~~~~ 411 (563)
...+-|+++...... ++-|+.|+|++|++++.++++. ...-||.++....... ....|+
T Consensus 159 SSq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--- 232 (1165)
T PRK09193 159 SSTLPHQSEHAFKAA---GMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--- 232 (1165)
T ss_pred cccchhhhHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---
Confidence 223344444433444 4459999999999999999987 3567988876332110 001111
Q ss_pred CCccccC----ce-----------------------------EEEee--CCcEEEEEechhHHHHHHHHHHHHhCCCc--
Q 008493 412 GIPLEVG----KG-----------------------------RILIE--GERVALLGYGTAVQSCLAASALLESNGLR-- 454 (563)
Q Consensus 412 ~~~~~~~----k~-----------------------------~~l~~--g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~-- 454 (563)
++..+.+ ++ ++... +.++.||++|.....+++|.+.| |++
T Consensus 233 ~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~ 309 (1165)
T PRK09193 233 DFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEE 309 (1165)
T ss_pred cccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChh
Confidence 1111111 00 11111 35799999999999999998765 554
Q ss_pred ------eEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHH
Q 008493 455 ------LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPA 528 (563)
Q Consensus 455 ------v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 528 (563)
++|+.+...||||.+.++++++..+.|+||||... =+-..|...+.+.+. ..+...+|..+.-+.
T Consensus 310 ~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~g~----- 380 (1165)
T PRK09193 310 TAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFDPQGN----- 380 (1165)
T ss_pred hhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeCCCCC-----
Confidence 89999999999999999999999999999999752 356666666654321 222345565431110
Q ss_pred HHHHH-cCCCHHHHHHHHHHHhcc
Q 008493 529 DQLAQ-AGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 529 ~ll~~-~gl~~~~I~~~i~~~~~~ 551 (563)
.++.. ..|+++.|.+++.+.+..
T Consensus 381 ~llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 381 WLLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred ccCCCcCCcCHHHHHHHHHHHhhh
Confidence 11222 348999999999887654
No 150
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.31 E-value=6.3e-12 Score=125.16 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=93.3
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
+++|+++|+|+|+++|.+ +++|||++|||+++. +....+.+|+++++|+++||.||+.+.+ |..|..+....+.
T Consensus 68 ~~~G~alPaAiGaklA~P----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-t~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLANP----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-TNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHCC----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-ceecccCCCCCCc
Confidence 588999999999999975 899999999999863 3345677799999999999999985443 2222211110000
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
. .....+ + ......|+.++++++|+.++....-.+.++|.+++++
T Consensus 142 ~-------~~~~~~--------------g--------------~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 W-------TVTAQY--------------G--------------NIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred e-------eeeccC--------------C--------------CcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 0 000000 0 0000124567799999987421122789999999999
Q ss_pred HhccCCCCcEEEEEEecccC
Q 008493 187 VKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g~ 206 (563)
|.+ .++|++|+|.+..-.
T Consensus 187 Al~--~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 187 GFS--HKGFSFFDVFSNCHI 204 (277)
T ss_pred HHh--CCCCEEEEEcCCCCC
Confidence 997 689999999987654
No 151
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.31 E-value=5.5e-12 Score=125.43 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=98.8
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEccc-ccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG-~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
.|.+|.++|+|+|+++|++ +++||+++||| +++.| .+.|.+|+++++|+++||.||+.+.+ |..|.++..+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm-tggQ~s~~t~~ 130 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL-TTGQASPTTPR 130 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh-hcccccCCCCC
Confidence 5889999999999999975 89999999999 68855 47899999999999999999984443 33333332211
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
|.-... ..+ + ++- ..|+..+++++|..++......+++++.++
T Consensus 131 g~~t~~-------t~~--------------g---------------~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~ 174 (279)
T PRK11866 131 GVKTKT-------TPD--------------G---------------NIEEPFNPIALALAAGATFVARGFSGDVKHLKEI 174 (279)
T ss_pred Cceeec-------cCC--------------C---------------CCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHH
Confidence 110000 000 0 000 014556799999987766555899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++|.+ .++|++|++.+..-..
T Consensus 175 l~~Al~--~~Gps~I~v~~pC~~~ 196 (279)
T PRK11866 175 IKEAIK--HKGFSFIDVLSPCVTF 196 (279)
T ss_pred HHHHHh--CCCCEEEEEeCCCCCC
Confidence 999997 7899999999875443
No 152
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.30 E-value=8.1e-12 Score=125.72 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=94.4
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
|.+|.++|+|+|+++|.+ +++|||+.|||++. ++....+.+|+++++|+++||.||+.+.+.. .|.++....+.
T Consensus 70 g~mG~alpaAiGaklA~p----d~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~-gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP----DLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGLTK-GQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHCC----CCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhccc-CcccCCcCCCc
Confidence 789999999999999975 89999999999973 2444679999999999999999998544322 22211111110
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
-. ....+ + ...-.+|+..+++++|+.++....-.+.++|.+++++
T Consensus 144 ~~-------~~~~~--------------g--------------~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~ 188 (301)
T PRK05778 144 KT-------KTAPY--------------G--------------NIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKK 188 (301)
T ss_pred cc-------ccccC--------------C--------------CcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHH
Confidence 00 00000 0 0000135667799999987632233789999999999
Q ss_pred HhccCCCCcEEEEEEecccC
Q 008493 187 VKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g~ 206 (563)
|.+ .++|++|+|.+..-.
T Consensus 189 A~~--~~GpalIeV~~~C~~ 206 (301)
T PRK05778 189 AIS--HKGFAFIDVLSPCVT 206 (301)
T ss_pred HHh--CCCCEEEEEcCCCCC
Confidence 987 689999999876433
No 153
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.30 E-value=1.6e-10 Score=132.98 Aligned_cols=253 Identities=19% Similarity=0.139 Sum_probs=165.8
Q ss_pred CCeeecccchHHHH---------HHHHHHhhCCCeeEEeechhhHHHHHHHHHHHh-ccCCCC---eEEEEeCCCCCCCC
Q 008493 281 TRCFDVGIAEQHAV---------TFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDV-DLQKLP---VRFAMDRAGLVGAD 347 (563)
Q Consensus 281 ~r~i~~gi~E~~~~---------~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a-~~~~~p---v~~v~~~~G~~g~~ 347 (563)
+-+++.+++|.-++ .++.|.+..|.+.+++...+.+.++.|.+++.. ++.... |++++++.|. ..
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~--~S 162 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGA--KS 162 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCC--cc
Confidence 36899999999994 445555567899999999999999999996432 244433 5555566563 22
Q ss_pred CCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCCCC------------ccCCCCCCC
Q 008493 348 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNGIG------------VELPPGNKG 412 (563)
Q Consensus 348 G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~~~------------~~~p~~~~~ 412 (563)
..+-|+++...... ++-|+.|+|++|++++.+++++ ...-||.++........ ...|+ +
T Consensus 163 Sq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~---~ 236 (1186)
T PRK13029 163 SSVAHQSDHTFIAW---GIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD---D 236 (1186)
T ss_pred ccCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc---c
Confidence 33444444433444 4459999999999999999987 45679988774332110 00111 1
Q ss_pred CccccC--------------------------------ce-EEE--eeCCcEEEEEechhHHHHHHHHHHHHhCCCc---
Q 008493 413 IPLEVG--------------------------------KG-RIL--IEGERVALLGYGTAVQSCLAASALLESNGLR--- 454 (563)
Q Consensus 413 ~~~~~~--------------------------------k~-~~l--~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~--- 454 (563)
+..+.+ +. ++. .++.++.||++|.....+++|.+.| |++
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~ 313 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDAT 313 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhh
Confidence 111110 00 111 1246799999999999999998765 454
Q ss_pred -----eEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCc---cc----
Q 008493 455 -----LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDR---YI---- 522 (563)
Q Consensus 455 -----v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~---~~---- 522 (563)
++|+++...||||.+.++++++..+.|+||||... =+-..|...+.+... ..+...+|..+. -+
T Consensus 314 ~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~ 389 (1186)
T PRK13029 314 CAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWS 389 (1186)
T ss_pred ccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCCeeEeccccccccccccc
Confidence 88999999999999999999999999999999752 356666666654321 233345565430 00
Q ss_pred -CCCCHHHHHHH-cCCCHHHHHHHHHHHhc
Q 008493 523 -DHGSPADQLAQ-AGLTPSHIAATVFNILG 550 (563)
Q Consensus 523 -~~g~~~~ll~~-~gl~~~~I~~~i~~~~~ 550 (563)
..|. .++.. ..|+++.|.+++.+.+.
T Consensus 390 ~~~g~--~llp~~gEL~p~~va~~l~~~l~ 417 (1186)
T PRK13029 390 VPAGR--WLLPAHAELSPALIAKAIARRLA 417 (1186)
T ss_pred ccccC--CCCCcccCcCHHHHHHHHHHHHH
Confidence 0010 12333 35899999999988763
No 154
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.29 E-value=4.6e-11 Score=109.34 Aligned_cols=148 Identities=22% Similarity=0.201 Sum_probs=108.9
Q ss_pred HHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEee-chhhHHHHHHHHHHHh
Q 008493 249 LIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDV 327 (563)
Q Consensus 249 l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~-~~~f~~~a~dqi~~~a 327 (563)
+.+.+++..--.+++-.-.....+-+...+.+++.+..+++|++++++|.|++..|.++++.+ +++|+.++++++. .+
T Consensus 3 ~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a 81 (154)
T cd06586 3 FAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DA 81 (154)
T ss_pred HHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HH
Confidence 445555544333444332222333333345689999999999999999999999977888887 5999999999996 77
Q ss_pred ccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecC
Q 008493 328 DLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 398 (563)
Q Consensus 328 ~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~ 398 (563)
...++||+++....+..+..+.+||..++..+++.+|++.+..|+..++.. .+..|+. ..++|++|++++
T Consensus 82 ~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 82 AAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPA-GIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred HhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHH-HHHHHHHHHhcCCCCEEEEccC
Confidence 888999999987766544456789999999999999999888877755444 4454544 346799998753
No 155
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.28 E-value=1.1e-11 Score=124.21 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=95.9
Q ss_pred cCC-CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccc-cccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCC
Q 008493 24 FGT-GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 101 (563)
Q Consensus 24 ~~~-g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~-~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~ 101 (563)
.+. |.||+++|+|+|+++|.+ +++|||++|||+ ++.| ...+.+|+++++|+++||.||+.+.+ |..|.++.
T Consensus 65 ~~~~g~mG~alpaAiGaklA~P----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGm-t~~q~s~t 137 (286)
T PRK11867 65 YGFHTIHGRALAIATGLKLANP----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGL-TKGQYSPT 137 (286)
T ss_pred cchhhhhhcHHHHHHHHHHhCC----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhh-hcCccCCC
Confidence 344 899999999999999965 899999999995 7744 46799999999999999999985443 22222221
Q ss_pred CCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 102 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
...+.-. ....+ +. .. ...++.++++++|..++....-.+.+++.
T Consensus 138 t~~g~~~-------~~~~~--------------g~-~~-------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 138 SPVGFVT-------KTTPY--------------GS-IE-------------PPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CCCCccc-------ccccC--------------CC-CC-------------CCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 1111000 00000 00 00 01234556888998766433346899999
Q ss_pred HHHHHHhccCCCCcEEEEEEecccCCc
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
+++++|.+ .++|++|++.+..-..+
T Consensus 183 ~al~~Al~--~~Gp~lIev~~~C~~~~ 207 (286)
T PRK11867 183 ELIKAAIN--HKGFSFVEILQPCPTFN 207 (286)
T ss_pred HHHHHHHh--CCCCEEEEEeCCCCCCC
Confidence 99999987 68999999998765543
No 156
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.24 E-value=1.8e-11 Score=122.10 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=89.3
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
+.+|.++|+|+|+++|++ +++|||++|||++. ++....+.+|+++++|+++||.||+.+.+.. .|.++....|.
T Consensus 53 t~mG~alPaAiGaklA~P----d~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~-gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLANP----HLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGLTK-GQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHCC----CCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHhhh-cccccCccCCc
Confidence 457999999999999975 89999999999974 2455789999999999999999998544322 22221111110
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
- .... .+ +.. ..++.+++.+++.++|+...... .+.++|.+++++
T Consensus 127 ~------~~~~-~~--------------g~~------------~~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 K------TKSL-PY--------------PNI------------QDPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKE 171 (287)
T ss_pred c------eeec-cc--------------Ccc------------CCCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHH
Confidence 0 0000 00 000 00011222344666766544322 689999999999
Q ss_pred HhccCCCCcEEEEEEeccc
Q 008493 187 VKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g 205 (563)
|.+ .++|++|++.+..-
T Consensus 172 Al~--~~GpslIeV~~pC~ 188 (287)
T TIGR02177 172 AIN--HKGYALVDILQPCV 188 (287)
T ss_pred HHh--CCCCEEEEEeCCCC
Confidence 987 78999999998643
No 157
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.20 E-value=2.5e-11 Score=125.88 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=89.5
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccC-CCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~-~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
|++||++|+++|+++|.+ +|+++.|+|||++| ++-+++.+.-+|+ .|++|+++|+| |++.-..+.
T Consensus 411 GSIG~t~pAalGa~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~G-YTIEr~IHg------- 476 (557)
T COG3961 411 GSIGYTLPAALGAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDG-YTIERAIHG------- 476 (557)
T ss_pred hhcccccHhhhhhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCC-cEEEehhcC-------
Confidence 999999999999999987 89999999999999 7778899999999 55666665556 565222211
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeec-cCCCCHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP-VDGHNVDDLVAIL 184 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~dG~d~~~l~~a~ 184 (563)
....||++..|.+ .++.++||..-... ..-..-+++..++
T Consensus 477 ----------~~~~YNdI~~Wd~-----------------------------~~l~~afg~~~~~~~~~~~~~~~l~~~~ 517 (557)
T COG3961 477 ----------PTAPYNDIQSWDY-----------------------------TALPEAFGAKNGEAKFRATTGEELALAL 517 (557)
T ss_pred ----------CCcCcccccccch-----------------------------hhhhhhcCCCCceEEEeecChHHHHHHH
Confidence 1245777665543 34567777531111 1225667777788
Q ss_pred HHHhccCCCCcEEEEEEecccC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+.+.+ ..+++++|||+..+-.
T Consensus 518 ~~~~~-~~~~i~lIEv~lp~~D 538 (557)
T COG3961 518 DVAFA-NNDRIRLIEVMLPVLD 538 (557)
T ss_pred HHHhc-CCCceEEEEEecCccc
Confidence 87776 3678999999976443
No 158
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.19 E-value=5.8e-11 Score=120.78 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=105.6
Q ss_pred CCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC
Q 008493 19 SEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 19 ~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~ 98 (563)
+-|..||.++|||-+..++|+.+|. +++.|++++|||+++ |.+.+|.++..++..+++++.||..+.-
T Consensus 436 ~YH~EYgfSCMGYEiaG~lG~K~a~----pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGC------ 503 (617)
T COG3962 436 TYHLEYGFSCMGYEIAGGLGAKAAE----PDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGC------ 503 (617)
T ss_pred ceeeeecccccccccccccccccCC----CCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcch------
Confidence 4588999999999999999998654 589999999999999 7888899999999999999999964220
Q ss_pred CCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHH
Q 008493 99 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 178 (563)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~ 178 (563)
+..|++......++..|+. .... ..++.-|+.+.++++|.+..++ ++++
T Consensus 504 -----In~LQm~~Gg~sf~~~~r~---~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~~i~ 552 (617)
T COG3962 504 -----INRLQMATGGASFNNLLRD---TDHE--------------------EEILQVDFAAHAESYGAKAYKV---GTIE 552 (617)
T ss_pred -----hhhhhhhcCcchhhhhhhh---hccc--------------------CCCCcccHHHHHhhcCceeEec---CCHH
Confidence 1112111111111111111 0000 1233446777799999998877 8999
Q ss_pred HHHHHHHHHhccCCCCcEEEEEEecccC
Q 008493 179 DLVAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 179 ~l~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
+|.+|++++++ +.++++|++.|.+-.
T Consensus 553 eL~aAL~~Ak~--~~~ttvi~I~t~P~~ 578 (617)
T COG3962 553 ELEAALADAKA--SDRTTVIVIDTDPKT 578 (617)
T ss_pred HHHHHHHHHHh--CCCCEEEEEecCCcc
Confidence 99999999998 789999999998654
No 159
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.15 E-value=1.1e-10 Score=129.70 Aligned_cols=130 Identities=21% Similarity=0.271 Sum_probs=95.2
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.++||+++|+|+|+++|.+ +++||+++|||+|+.. ...+|.+|.++++|+++||.||+.+.+.. .+........
T Consensus 402 ~~~mG~~~~~AiGa~~a~p----~~~Vv~i~GDG~f~~~-g~~eL~tav~~~~~i~~vVlnN~~~g~~~-~q~~~~~~~~ 475 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAGE----KQRIVAFIGDSTFFHT-GIPGLINAVYNKANITVVILDNRITAMTG-HQPNPGTGVT 475 (595)
T ss_pred eeccCchHHHHhhhhhcCC----CCCEEEEeccchhhhc-CHHHHHHHHHcCCCeEEEEEcCcceeccC-CCCCCCCCCC
Confidence 4899999999999999864 8999999999999841 14679999999999999999998544322 1211100000
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 185 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~ 185 (563)
.. ...+-.+|+..+++++|+++.++.+..+++++.++++
T Consensus 476 ~~-----------------------------------------~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~ 514 (595)
T TIGR03336 476 GM-----------------------------------------GEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFK 514 (595)
T ss_pred CC-----------------------------------------CCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHH
Confidence 00 0000123556779999999887777788899999999
Q ss_pred HHhccCCCCcEEEEEEecc
Q 008493 186 EVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 186 ~a~~~~~~~P~~I~v~t~~ 204 (563)
++.+ .++|++|+++...
T Consensus 515 ~a~~--~~gp~li~v~~~C 531 (595)
T TIGR03336 515 AALA--AEGVSVIIAKQPC 531 (595)
T ss_pred HHHh--cCCCEEEEEcccC
Confidence 9987 6889999997643
No 160
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.05 E-value=1.4e-09 Score=108.86 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=108.5
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
...+.+|-+.+.|.|++.|.+..+++.+|||+.|||++.. ...+++..|...+.|+++||.||+ ....|..|.++..+
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe-~Y~nTGgQ~S~~Tp 143 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNE-AYMNTGIQRSGSTP 143 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCc-cccCCCCCCCCCCC
Confidence 3457788889999999999877677789999999998864 334889999999999999999999 56677778877666
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.|+..+. ...++. ..+. +. -..|...++.++|..|+..++-.++.++.++
T Consensus 144 ~Ga~t~t---sp~Gk~-------------~~G~---~~-----------~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~ 193 (299)
T PRK11865 144 FGASTTT---SPAGKY-------------SRGE---DR-----------PKKNMPLIMAAHGIPYVATASIGYPEDFMEK 193 (299)
T ss_pred CCccccc---CCCCcc-------------cCCC---CC-----------CCCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 6542100 000000 0000 00 0012345578889988877777899999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++|.+ .++|.+|++++..-.+
T Consensus 194 i~~A~~--~~Gps~I~v~sPC~~~ 215 (299)
T PRK11865 194 VKKAKE--VEGPAYIQVLQPCPTG 215 (299)
T ss_pred HHHHHh--CCCCEEEEEECCCCCC
Confidence 999997 6899999999865433
No 161
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.03 E-value=6.3e-10 Score=136.14 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=95.3
Q ss_pred CCCCCch--hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhccc--CCCEEEEEeCCCCcccCcccCCCC
Q 008493 25 GTGHSST--SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL--DSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 25 ~~g~~G~--~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~--~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
+.|.||+ ++|.|+|+++|. +++|+|++|||+|+ +..++|.+|+++ ++|+++||.||+.+.+
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi-------- 821 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAI-------- 821 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHh--------
Confidence 4599999 599999999884 68899999999999 666889999884 8999999999985322
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
+. .+...+... ... ++........+++..++++||+++.++ ++.++|
T Consensus 822 ------~~-~l~~~~~~~--------------------~~~---~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL 868 (1655)
T PLN02980 822 ------FS-LLPIAKRTE--------------------PRV---LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSEL 868 (1655)
T ss_pred ------hh-cCccCCCCc--------------------chh---HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHH
Confidence 10 000000000 000 000000011356778899999999877 899999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
.++++++.+ .++|++|+|.|.+..
T Consensus 869 ~~aL~~a~~--~~~p~lIEV~t~~~~ 892 (1655)
T PLN02980 869 EDALFTSQV--EQMDCVVEVESSIDA 892 (1655)
T ss_pred HHHHHHhhc--cCCCEEEEEecChhh
Confidence 999999986 688999999998654
No 162
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.97 E-value=1.5e-09 Score=105.54 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=86.6
Q ss_pred eeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhc
Q 008493 283 CFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC 362 (563)
Q Consensus 283 ~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~ 362 (563)
.+...-+|.++++++.|+|++|.|.++.|.++.+..+.|.| ..+++.++|++++...++..+..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTT-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHH-
Confidence 55667899999999999999999999999999999999998 6789999998888755443344478888888876655
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 363 LPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 363 ~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
--++.|+.|+|+||++++...|++ +...|++++.+...
T Consensus 116 d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~ 156 (230)
T PF01855_consen 116 DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL 156 (230)
T ss_dssp TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence 578999999999999999999987 56789999886653
No 163
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.94 E-value=9.4e-10 Score=110.77 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=101.6
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
|.|.||++||+|+|+..|+. +..|+=+-||++|. |...+|.++...++|+.++|.||..+.
T Consensus 522 GLGtMGfGLPAAIGAsVA~P----~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqG------------- 582 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVANP----DAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQG------------- 582 (675)
T ss_pred CccccccCcchhhcccccCc----ccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhh-------------
Confidence 45999999999999999875 99999999999999 777889999999999999999998422
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+.+.++.++...+|.- ..-..|++-.+++++|++..++ ..-++|.+.+
T Consensus 583 --MVtQWq~lFYe~rysH---------------------------ThQ~nPnf~klA~AmGikalRV---~K~edL~~k~ 630 (675)
T KOG4166|consen 583 --MVTQWQDLFYEARYSH---------------------------THQENPNFLKLAAAMGIKALRV---TKKEDLREKI 630 (675)
T ss_pred --hHHHHHHHHHHhhhcc---------------------------ccccCccHHHHHHhcCCchhee---ehHHHHHHHH
Confidence 2333444333333321 1111356677899999998877 6778899999
Q ss_pred HHHhccCCCCcEEEEEEecccCCc
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
++... .++|++++|.+.+-...
T Consensus 631 kefls--TkGPvLleV~v~~kehV 652 (675)
T KOG4166|consen 631 KEFLS--TKGPVLLEVIVPHKEHV 652 (675)
T ss_pred HHHhC--CCCCeEEEEEccCccce
Confidence 99887 79999999998765543
No 164
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.90 E-value=2e-09 Score=111.53 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.|++|+++|+++|+++|.+ +++|+.|+|||++| ...+.+.++.+|++|.++++.||+.+.+.-..++
T Consensus 414 wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~------- 480 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD------- 480 (561)
T ss_pred EeeccccchhhhhhhhccC----CceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC-------
Confidence 4999999999999999987 79999999999999 5667899999999776666667655776444433
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceE--eeccCCCCHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYY--IGPVDGHNVDDLVAI 183 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~dG~d~~~l~~a 183 (563)
.+ |+.+..|. +.++++++|-.- .....-....++.++
T Consensus 481 -----------~~-Yn~I~~Wd-----------------------------~~~l~~afg~~~gk~~~~~v~~~~e~~~~ 519 (561)
T KOG1184|consen 481 -----------GP-YNDIQNWD-----------------------------YTALLEAFGAGEGKYETHKVRTEEELVEA 519 (561)
T ss_pred -----------CC-ccccccch-----------------------------HHHHHHhhcCccceeEEeeeccchHHHHH
Confidence 12 54443322 224466666421 111111455677777
Q ss_pred HHHHhccCCCCcEEEEEEecc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~ 204 (563)
++.+...+.+++++|||+..+
T Consensus 520 ~~~~~~~~~~~i~liEv~l~~ 540 (561)
T KOG1184|consen 520 IKDATFEKNDKIRLIEVILPV 540 (561)
T ss_pred HhhhhhcccCceEEEEEecCc
Confidence 776663346789999999654
No 165
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.83 E-value=2.2e-08 Score=100.45 Aligned_cols=148 Identities=23% Similarity=0.325 Sum_probs=80.8
Q ss_pred CccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcc-cC----C
Q 008493 4 MRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY-LD----S 78 (563)
Q Consensus 4 ~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~-~~----~ 78 (563)
|...||+.+|..+ ++|......|-+|++++.|.|+++-+ +|.+|+|++|||+..+|... +-+.+.. ++ .
T Consensus 118 FS~PgGipSH~~p-~tPGsIhEGGELGYaLshA~GA~~Dn----Pdliv~~vvGDGEaETGplA-~sWh~~kflnP~~dG 191 (379)
T PF09364_consen 118 FSFPGGIPSHVSP-ETPGSIHEGGELGYALSHAFGAVFDN----PDLIVACVVGDGEAETGPLA-ASWHSNKFLNPATDG 191 (379)
T ss_dssp BTSTTSB-SSS-T-TSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHH-HHGGGGGSS-TTTS-
T ss_pred CCCCCCCccccCc-CCCCccCcCcchhhHHHHHhhcccCC----CCeEEEEEecCCcccCCccc-ccccccceeCcccCc
Confidence 3334677777765 56666667899999999999999865 49999999999999987542 2333322 22 5
Q ss_pred CEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCc
Q 008493 79 DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGS 158 (563)
Q Consensus 79 pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (563)
.|+-|+.-|+ +.|+..+ + + .|. +.+++.
T Consensus 192 aVLPILhLNG-~KI~~pT-------i--l----~r~----------------------~~~eL~---------------- 219 (379)
T PF09364_consen 192 AVLPILHLNG-YKISNPT-------I--L----ARM----------------------SDEELE---------------- 219 (379)
T ss_dssp EEEEEEEE-S-BSSSSB--------H--H----HHS-----------------------HHHHH----------------
T ss_pred eeeceEEecC-ccccCCe-------E--e----eec----------------------CHHHHH----------------
Confidence 6888888999 4442111 0 1 110 012333
Q ss_pred chhhhcCceEeeccCCCCHHHHHHHHH---------------HHhcc-CCCCc--EEEEEEecccCCcch
Q 008493 159 TLFEELGLYYIGPVDGHNVDDLVAILE---------------EVKNT-KTTGP--VLIHVVTEKGRGYPY 210 (563)
Q Consensus 159 ~~~~~~G~~~~~~~dG~d~~~l~~a~~---------------~a~~~-~~~~P--~~I~v~t~~g~g~~~ 210 (563)
.+++.+||..+ .++|+|++++...+. +|+.. ...+| -+|.++|.||++.+.
T Consensus 220 ~lf~G~Gy~p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 220 ALFRGYGYEPI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp HHHHHTTEEEE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-S
T ss_pred HHHHhCCCeEE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCcc
Confidence 34999999877 678888866544321 11211 11234 489999999998764
No 166
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.82 E-value=1.9e-08 Score=103.46 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=90.1
Q ss_pred cccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcc-cCcccCCCC
Q 008493 22 DCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVS-LPTATLDGP 100 (563)
Q Consensus 22 ~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s-~~t~~~~~~ 100 (563)
|.=..|.||-+++.|+++|++. +++.|||+-||++|. ...-++.++.++++|+++||.||++++ .++
T Consensus 425 DaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFG--fSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~------ 492 (571)
T KOG1185|consen 425 DAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFG--FSAMELETFVRYKLPVVIVVGNNNGIYGLDD------ 492 (571)
T ss_pred CCccccccccchhHHHHHHhhC----CCCeEEEEecCcccC--cchhhHHHHHHhcCCeEEEEecCCcccccCc------
Confidence 3334588888888888887776 599999999999997 444569999999999999999876432 211
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
..|..++ +.... ..-++. ...-.-.+..+.++||-+..-+ +++++|
T Consensus 493 -----------------~~~~~I~-e~~~~--~~~p~~-----------~l~~~~rY~~v~ka~G~kG~~v---~t~~el 538 (571)
T KOG1185|consen 493 -----------------DGWKQIS-EQDPT--LDLPPT-----------ALLANTRYDKVAKAFGGKGYFV---STVEEL 538 (571)
T ss_pred -----------------ccHHHHh-hcCcc--cCCCcc-----------cccccccHHHHHHHcCCCceee---CCHHHH
Confidence 1122222 00000 000000 0000011234478888875535 699999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
.++++++... +++|++|-+...+...
T Consensus 539 ~~~l~~a~q~-~~~psvINVlI~p~~~ 564 (571)
T KOG1185|consen 539 LAALQQACQD-TDKPSVINVLIGPTAF 564 (571)
T ss_pred HHHHHHHHhc-CCCCeEEEEEeccccc
Confidence 9999998873 5699999999876653
No 167
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.56 E-value=1.9e-06 Score=78.20 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCCCCCcChHHHH----H----h-------C---CCCeeecccchHHHHHHHHHHhhC
Q 008493 243 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFL----R----R-------F---PTRCFDVGIAEQHAVTFAAGLACE 303 (563)
Q Consensus 243 ~a~~~~l~~~~~~~~-~v~~~~~D~~~s~~~~~~~----~----~-------~---p~r~i~~gi~E~~~~~~a~G~a~~ 303 (563)
.+++..|.++++.++ ++.++++|...|..+...- . . + +++.+..-+||+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888765 7999999998888763221 1 0 1 235555669999999999999999
Q ss_pred CCeeEEeechhhHH---HHHHHHHHHhc-------cCCCC-eEEEEeCCCC-CCCCCCCCCChhhhhhhh-cCC-CcEEE
Q 008493 304 GLKPFCAIYSSFMQ---RAYDQVVHDVD-------LQKLP-VRFAMDRAGL-VGADGPTHCGSFDVTFMA-CLP-NMVVM 369 (563)
Q Consensus 304 G~~~~~~~~~~f~~---~a~dqi~~~a~-------~~~~p-v~~v~~~~G~-~g~~G~tH~~~~d~~~~~-~~p-~~~v~ 369 (563)
|.+.++.+|-.|+. -++.|....+. ....| +.++.+.-.. .+.+|.|||+..=+..+. ..| -++||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 99999999999973 34444322211 12233 3333333222 468999999755443333 234 37899
Q ss_pred ecCCHHHHHHHHHHHHh
Q 008493 370 APSDEAELFHMVATAAA 386 (563)
Q Consensus 370 ~P~~~~e~~~~l~~a~~ 386 (563)
.|.|++-+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999999975
No 168
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.33 E-value=9.8e-07 Score=94.45 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=92.7
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
=.||.++++|-|++++. .+++++++|||.|.+ ....++..|...+.|++++|.+|. ..-.|..|+.+...+..
T Consensus 428 ~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~H-sGi~~l~nAV~n~~~~~~vvLdN~-~tAMTGgQp~pg~~~~~ 500 (640)
T COG4231 428 TMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFH-SGILALINAVYNKANILVVVLDNR-TTAMTGGQPHPGTGVAA 500 (640)
T ss_pred hhccchhhhcccccccc-----CCceEEEeccccccc-cCcHHHHHHHhcCCCeEEEEEecc-chhccCCCCCCCccccc
Confidence 45677788888877764 388999999999996 333679999999999999999999 55566666644322111
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
. +.. .+ .-....+.+++|...+..+|-.|.+++.+++++
T Consensus 501 ~---------------------------g~~--~~------------~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~ke 539 (640)
T COG4231 501 E---------------------------GTK--ST------------AIVIEEVVRAMGVEDVETVDPYDVKELSEAIKE 539 (640)
T ss_pred C---------------------------CCc--cc------------eeEhhHhhhhcCceeeeccCCcchHHHHHHHHH
Confidence 0 000 00 001124478899998888899999999999999
Q ss_pred HhccCCCCcEEEEEEec
Q 008493 187 VKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~ 203 (563)
+++ .++|.+|..+..
T Consensus 540 ale--~~gpsViiak~~ 554 (640)
T COG4231 540 ALE--VPGPSVIIAKRE 554 (640)
T ss_pred Hhc--CCCceEEEEcCc
Confidence 998 678999988764
No 169
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.24 E-value=3.5e-06 Score=84.80 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=95.8
Q ss_pred CchhhHHHHHHHHhhhhcCCCCcEEEEEccc-ccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhh
Q 008493 29 SSTSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGAL 107 (563)
Q Consensus 29 ~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG-~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l 107 (563)
-|-+++.|.|+.+|.+ +..||++-||| ++..|. ..+--+.+.+.++++||.||. .+..|..|.++..+.|.-
T Consensus 72 ~gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNe-vYgnTggQ~S~tTp~G~~ 144 (294)
T COG1013 72 HGRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNE-VYGNTGGQASPTTPKGAK 144 (294)
T ss_pred cCcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCe-ecccCCCccCCCCCCCce
Confidence 3445799999999987 77899999999 555444 578888888999999999999 667788888887766652
Q ss_pred HHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHH
Q 008493 108 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV 187 (563)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a 187 (563)
.+. ... +.... .+ .|...++-++|..|+...--.++.++.+.+++|
T Consensus 145 t~t---~p~------------------Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA 190 (294)
T COG1013 145 TKT---TPY------------------GKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKA 190 (294)
T ss_pred eee---cCC------------------CCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHH
Confidence 100 000 00000 00 122345778888777655445699999999999
Q ss_pred hccCCCCcEEEEEEecccC
Q 008493 188 KNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 188 ~~~~~~~P~~I~v~t~~g~ 206 (563)
.+ .++|.+|++.+..-.
T Consensus 191 ~~--~~Gps~I~v~sPC~t 207 (294)
T COG1013 191 AE--HKGPSFIDVLSPCPT 207 (294)
T ss_pred Hh--ccCCeEEEEecCCCC
Confidence 87 679999999986543
No 170
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.11 E-value=6.1e-06 Score=81.37 Aligned_cols=138 Identities=21% Similarity=0.223 Sum_probs=91.1
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.|.+||.+|+|+|+..|.. ++.+|++.||-.|| ...|.|...+.+++|.+.++.||.|..
T Consensus 418 agplgwtipaalgv~~adp----~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylg-------------- 477 (592)
T COG3960 418 AGPLGWTIPAALGVCAADP----KRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLG-------------- 477 (592)
T ss_pred cCCcccccchhhceeecCC----CCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHH--------------
Confidence 3999999999999977754 89999999999999 677999999999999999999998622
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 185 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~ 185 (563)
+.+.-+|-+. -.|.. ...|.+.-.. -.+=..-|-.++++++|++.+++ .+++++..+++
T Consensus 478 -lirqaqr~f~-mdy~v----~laf~nin~~------------~~~gygvdhv~v~eglgckairv---~~p~e~a~af~ 536 (592)
T COG3960 478 -LIRQAQRAFD-MDYCV----QLAFENINSS------------EVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFE 536 (592)
T ss_pred -HHHHHHhcCC-cccee----eehhhccCCc------------cccccCccceeehhccCceeEEe---cChHHhhHHHH
Confidence 2122122100 00000 0000000000 00000123456789999998888 67888888888
Q ss_pred HHhcc--CCCCcEEEEEEecc
Q 008493 186 EVKNT--KTTGPVLIHVVTEK 204 (563)
Q Consensus 186 ~a~~~--~~~~P~~I~v~t~~ 204 (563)
+++.. +..-|+++++.-.+
T Consensus 537 ~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 537 QAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHhcCCCeeeehHHHH
Confidence 77652 45679999887543
No 171
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=98.05 E-value=0.00018 Score=66.12 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=93.5
Q ss_pred HHHHHHHhcC-CCEEEEecCCCCCcChHHHHH----hCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHH
Q 008493 247 EALIAEAEVD-KDVVAIHAAMGGGTGLNLFLR----RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYD 321 (563)
Q Consensus 247 ~~l~~~~~~~-~~v~~~~~D~~~s~~~~~~~~----~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~d 321 (563)
+++.+.+.+. -+.+..-+.-....-++.+.+ +..-+++.+- .|++++.+|.|.++.|.++++.+.++.+..+..
T Consensus 3 e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~ 81 (160)
T cd07034 3 EAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAE 81 (160)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHH
Confidence 4455555444 344443333111111244543 2345778776 999999999999999888666668888888888
Q ss_pred HHHHHhccCCCCeEEEEeCCCCCCCC--CCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 322 QVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 322 qi~~~a~~~~~pv~~v~~~~G~~g~~--G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
.+. .+...+.|++++....+..+.. ...|+......+++ |-.-++.+.+++|+..+++.|+. ..++|++++.
T Consensus 82 ~l~-~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 82 ALY-LAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHH-HHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 885 4555689999987554432221 11233333333332 34567889999999999999886 2347999876
Q ss_pred c
Q 008493 397 P 397 (563)
Q Consensus 397 ~ 397 (563)
+
T Consensus 159 ~ 159 (160)
T cd07034 159 D 159 (160)
T ss_pred C
Confidence 3
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.91 E-value=0.0072 Score=63.05 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=104.5
Q ss_pred chhhhcCceEeeccCC---CCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCC
Q 008493 159 TLFEELGLYYIGPVDG---HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSS 235 (563)
Q Consensus 159 ~~~~~~G~~~~~~~dG---~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 235 (563)
.+++++++++. +++. .+.+.+.++++.+.+ .++|+.+.+.-.--..+.. . . .. . ...+
T Consensus 109 ~lL~~~~i~~~-~~~~~~~~~~~~~~~a~~~~~~--~~~p~a~l~~~~~~~~~~~---~--~---~~-----~-~~~~-- 169 (361)
T TIGR03297 109 SLLDALEIPWE-VLSTDNDEALAQIERALAHALA--TSRPYALVVRKGTFASYKL---K--G---EP-----A-NPLP-- 169 (361)
T ss_pred HHHHHcCCCEE-ECCCChHHHHHHHHHHHHHHHH--HCCCEEEEEcccccccccc---c--c---CC-----C-CCCc--
Confidence 45899999876 4421 223456777777776 6789888776322111110 0 0 00 0 0000
Q ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC-hHHHHH----hCCCCeeecccchHHHHHHHHHHhhCC-CeeEE
Q 008493 236 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-LNLFLR----RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFC 309 (563)
Q Consensus 236 ~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~-~~~~~~----~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~ 309 (563)
...+-.+++ +.+.+.+.. ..+++ .|.|.... +-.+.. .+|.+++.+|--= ...++|.|++++- -++++
T Consensus 170 -~~~~r~~ai-~~i~~~l~~-~~iVV--~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG-~a~p~AlG~ala~p~r~Vv 243 (361)
T TIGR03297 170 -TLMTREEAI-AAILDHLPD-NTVIV--STTGKTSRELYELRDRIGQGHARDFLTVGSMG-HASQIALGLALARPDQRVV 243 (361)
T ss_pred -CCCCHHHHH-HHHHHhCCC-CCEEE--ECCCCCcHHHHHhhcccccCCCCceEeechhh-hHHHHHHHHHHHCCCCCEE
Confidence 013333333 334444433 23444 34442211 112221 1267777653222 2335678887763 35566
Q ss_pred eechh--hHHHHHHHHHHHhccCC-CCeEEEE-eCCCC--CCCCCCCCCChhhhh-hhhcCCCc-EEEecCCHHHHHHHH
Q 008493 310 AIYSS--FMQRAYDQVVHDVDLQK-LPVRFAM-DRAGL--VGADGPTHCGSFDVT-FMACLPNM-VVMAPSDEAELFHMV 381 (563)
Q Consensus 310 ~~~~~--f~~~a~dqi~~~a~~~~-~pv~~v~-~~~G~--~g~~G~tH~~~~d~~-~~~~~p~~-~v~~P~~~~e~~~~l 381 (563)
.+.++ |++.+-+ + ..++..+ .|++++. ...+. .+. -+++....|+. +.+.+ |+ ..+...++.|+...+
T Consensus 244 ~i~GDGsflm~~~e-L-~t~~~~~~~nli~VVlNNg~~~~~g~-q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al 319 (361)
T TIGR03297 244 CLDGDGAALMHMGG-L-ATIGTQGPANLIHVLFNNGAHDSVGG-QPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETAL 319 (361)
T ss_pred EEEChHHHHHHHHH-H-HHHHHhCCCCeEEEEEcCccccccCC-cCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHH
Confidence 66444 4444322 3 3445455 4666555 34432 221 12333333333 33333 54 567889999999999
Q ss_pred HHHHhcCCCCEEEEe
Q 008493 382 ATAAAIDDRPSCFRY 396 (563)
Q Consensus 382 ~~a~~~~~~P~~i~~ 396 (563)
+++++ .++|.+|..
T Consensus 320 ~~a~~-~~gp~lIeV 333 (361)
T TIGR03297 320 TAASS-ANGPRLIEV 333 (361)
T ss_pred HHHHh-CCCcEEEEE
Confidence 99975 578988755
No 173
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.66 E-value=0.0011 Score=60.46 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=82.1
Q ss_pred CCeeecccchHHHHHHHHHHhhCCC-eeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACEGL-KPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~G~-~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++.+ ..|.+++.+|.|++..+. .+++.+ .++.+..+...+ ..+...+.|++++....+.....-.+||...+..
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 355555 799999999999999854 444444 678777777887 4667779999999866554322233456555556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc---C-CCCEEEEec
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI---D-DRPSCFRYP 397 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~---~-~~P~~i~~~ 397 (563)
+++.+..+ .+.+.+++++...+..|++. . ++|++|.++
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77776555 67788999999999999873 2 579998765
No 174
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.52 E-value=0.00021 Score=73.19 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=80.8
Q ss_pred CcEEEEEccccc-ccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHh
Q 008493 50 NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 128 (563)
Q Consensus 50 ~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 128 (563)
..||++.|||.. ..|. ..+.-+...+.|+++||.||. .+..|..|.++..+.|...+.- ..++.
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe-~Y~nTGgQ~S~tTp~Ga~t~ts---p~Gk~--------- 216 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTE-VYSNTGGQASKATPLGAVAKFA---AAGKR--------- 216 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCc-ccccCCCcCCCCCCCcCcCccC---CCCCC---------
Confidence 589999999955 4444 567777777889999999999 5667877887777666531100 00000
Q ss_pred hhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccC-CCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 129 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d-G~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
.... |...++-++|..|+.... +.++.++.+++++|.+ .++|.+|++.+..-
T Consensus 217 -------~~kk----------------d~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sPC~ 269 (365)
T cd03377 217 -------TGKK----------------DLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSPCI 269 (365)
T ss_pred -------CCCc----------------CHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEccCc
Confidence 0001 223446778887765553 4599999999999998 68999999998744
No 175
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.40 E-value=0.00046 Score=73.41 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=86.8
Q ss_pred CCCch--hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 27 GHSST--SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 27 g~~G~--~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
|..|. .++-|+|++.|. .++++.++||=++-.-++ .+........|+++||.||++=.|....
T Consensus 420 GA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF~~L-------- 484 (566)
T COG1165 420 GASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIFSLL-------- 484 (566)
T ss_pred CccccchhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceeeeec--------
Confidence 44444 589999999985 477999999999986554 4555556668888888877532221110
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
..-... . .++....-+-..||+.+++.||+.|..+ ++++++.+++
T Consensus 485 -------p~~~~~----------------------~---~fe~~F~tPh~ldF~~la~~y~l~y~~~---~s~~~l~~~~ 529 (566)
T COG1165 485 -------PQAQSE----------------------P---VFERLFGTPHGLDFAHLAATYGLEYHRP---QSWDELGEAL 529 (566)
T ss_pred -------cCCCCc----------------------c---hHHHhcCCCCCCCHHHHHHHhCcccccc---CcHHHHHHHH
Confidence 000000 0 1111222333457778899999998877 8999999999
Q ss_pred HHHhccCCCCcEEEEEEecccCC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+.+-. ..+-++||++|.+..+
T Consensus 530 ~~~~~--~~g~~viEvkt~r~~~ 550 (566)
T COG1165 530 DQAWR--RSGTTVIEVKTDRSDG 550 (566)
T ss_pred hhhcc--CCCcEEEEEecChhHH
Confidence 98875 4678999999987654
No 176
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.28 E-value=0.00071 Score=79.47 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=53.1
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~ 98 (563)
.-+||.+.+.++|++-+.. +++|++++|||.|.+ +..-++..|...+.|++++|.+|+... .|..|+
T Consensus 467 ~~~MG~~g~~~~G~a~~~~----~~~v~a~iGDgTf~H-SG~~al~~AV~~~~nit~~IL~N~~tA-MTGgQp 533 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFTE----TKHVFQNLGDGTYFH-SGSLAIRQAVAAGANITYKILYNDAVA-MTGGQP 533 (1159)
T ss_pred eeccCccchhhceeccccC----CCCEEEEeccchhhh-cCHHHHHHHHhcCCCeEEEEEeCCccc-ccCCCC
Confidence 3578888899999988743 577999999999996 333589998999999999999999544 454444
No 177
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.28 E-value=0.00086 Score=78.58 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~ 98 (563)
+.-+||.+.+.++|++-+.+ +++|++++|||.|.+ +..-++..|...+.|++++|.+|+... .|..|+
T Consensus 479 ~~~~MG~eg~~~~G~a~f~~----~~hv~a~iGDgTffH-SG~~al~~AV~~~~nit~~IL~N~~vA-MTGgQ~ 546 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFTD----EKHVFQNLGDGTYFH-SGLLAIRAAVAAGVNITYKILYNDAVA-MTGGQP 546 (1165)
T ss_pred eeeccCCcchhhceeccccC----CCcEEEEeccccchh-cCHHHHHHHHhcCCCeEEEEEeCCccc-ccCCCC
Confidence 45788999999999887632 578999999999996 344689888889999999999999544 454444
No 178
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=97.06 E-value=0.0089 Score=55.68 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=82.1
Q ss_pred HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCC-CCCC
Q 008493 273 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGP 349 (563)
Q Consensus 273 ~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g-~~G~ 349 (563)
+.+.+...-|++.+ ..|.+++.+|.|++.. |...++.+ .++.+..+...+ ..+...+.|++++....+... ..+.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGL-ANAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHH-HHHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHH-hhcccceeeEEEEecccchhhhcccc
Confidence 34444433566664 8999999999999987 54545554 556665555555 345677999999986655422 2456
Q ss_pred CCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 350 THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 350 tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
.|+......+++.+-.+ .+.+.++.++...+++|++ ..++|++|.++..
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 66556566777776644 6666777777777777665 4588999988765
No 179
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.03 E-value=0.002 Score=75.42 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=52.7
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCC
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 98 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~ 98 (563)
.-+||.+.+.++|++-+.+ +++|++++|||.|.+ +..-++..|...+.|++++|.+|+... .|..|+
T Consensus 494 ~~~MGgeg~~~~G~a~f~~----~~hv~aniGDgTffH-SG~~alr~AV~~~~nit~kIL~N~avA-MTGgQp 560 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFSR----RRHVFQNLGDGTYFH-SGLLAIRQAIAAGVNITYKILYNDAVA-MTGGQP 560 (1186)
T ss_pred eeccCcchhhheeecccCC----CCCEEEEeccccchh-cCHHHHHHHHhcCCCEEEEEEeCcchh-ccCCCC
Confidence 3678888888888887633 577999999999996 344689988899999999999999544 454444
No 180
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.86 E-value=0.064 Score=49.53 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=78.5
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++ ..-.|+++..||.|++.. |...++.+ .++.+..++--+ ..+...+.||+++.............+|...+..+
T Consensus 40 ~~v-~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFI-QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEE-EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 444 448999999999999987 65444443 778776666555 45677899999996433221111224666556667
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
++.+-.+ ...+.++.++...+++|++ ..++|++|-++..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7776654 4666788888888888775 2468999988764
No 181
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.83 E-value=0.053 Score=49.69 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhc-cCCCCeEEEEeCCCCCCCCCCCCC--ChhhhhhhhcC
Q 008493 287 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFMACL 363 (563)
Q Consensus 287 gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~-~~~~pv~~v~~~~G~~g~~G~tH~--~~~d~~~~~~~ 363 (563)
...|..++++|+|..+.|.++.+.+-.+....+...+ ..+. ..+.||+++....|..+..-+.|. .......+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 5688888999999999998888777544454566666 3455 789999999866664332211121 11111222221
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCC
Q 008493 364 PNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 364 p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
++......+++|+ ..+..|++ ..++|++|.+.+.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2235666778888 88887775 3458999988664
No 182
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=96.47 E-value=0.075 Score=48.95 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=70.8
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++.+ -.|++++.||-|++.. |...++.+ .++.+..++--+ ..+...+.|++++............++|...+..+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 44544 8899999999999986 64444443 788876666555 46677899999997543321222334666665566
Q ss_pred hhcCCCcEEEecCCHHH------HHHHHHHHHh----cCCCCEEEEec
Q 008493 360 MACLPNMVVMAPSDEAE------LFHMVATAAA----IDDRPSCFRYP 397 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e------~~~~l~~a~~----~~~~P~~i~~~ 397 (563)
++.+-.+ .....++.+ +..+++.|+. ..++|++|-++
T Consensus 115 ~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 6655443 234444444 4555555554 34579998654
No 183
>PRK07586 hypothetical protein; Validated
Probab=96.36 E-value=0.5 Score=52.07 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 320 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~ 320 (563)
.+.|.+.+++..==.+++ +.|++.+ +.+.+.-.=|++.+ ..|++++.||.|+|.. |...+|. ++++.+..++
T Consensus 4 ~~~l~~~L~~~Gv~~vFG--~pG~~~~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 4 AESLVRTLVDGGVDVCFA--NPGTSEMHFVAALDRVPGMRCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred HHHHHHHHHHCCCCEEEE--CCCCchHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 355666666553223333 3444433 23322112356655 8999999999999976 6555444 4888876665
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEe
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRY 396 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~ 396 (563)
--+ ..+...+.||+++.............||......+++.+-.+ .+...++.++...+++|+. ..++||+|-+
T Consensus 81 ~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~i 158 (514)
T PRK07586 81 ANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLIL 158 (514)
T ss_pred HHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 555 356778999999864322211111224444444556654332 4667778888887777765 2368999999
Q ss_pred cCCC
Q 008493 397 PRGN 400 (563)
Q Consensus 397 ~~~~ 400 (563)
+...
T Consensus 159 P~Dv 162 (514)
T PRK07586 159 PADV 162 (514)
T ss_pred ccch
Confidence 8764
No 184
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.27 E-value=0.007 Score=72.31 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=81.7
Q ss_pred CcEEEEEccccc-ccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHh
Q 008493 50 NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 128 (563)
Q Consensus 50 ~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 128 (563)
+.||++.|||.. ..|. ..+.-+...+.++.+||.||. .+..|..|.++..+.|...+.- ..++.
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne-~Y~nTggQ~S~~tp~g~~t~~~---~~g~~--------- 1016 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTE-VYSNTGGQSSKATPTGAIAKFA---AAGKR--------- 1016 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCc-ccccCCCcCCCCCCCcCccccC---CCCCC---------
Confidence 579999999955 4444 567777888899999999999 5667888887777666531100 00000
Q ss_pred hhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccC-CCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 129 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d-G~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
.... |...++.++|..|+..+. |.++.++.+++++|.+ .++|.+|++.+..-
T Consensus 1017 -------~~kk----------------d~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1017 -------TSKK----------------DLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSPCI 1069 (1165)
T ss_pred -------CCCc----------------CHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECCCc
Confidence 0001 222347788988776654 6689999999999987 68999999999754
No 185
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.20 E-value=0.46 Score=52.88 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=91.3
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQR 318 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~ 318 (563)
.+.|.+.+++. -+-++. +.|+..+ +.+. +.+ =|++.+ ..|++++.+|.|+|.. |...+|. ++++.+..
T Consensus 11 ~~~l~~~L~~~GV~~vFg---~pG~~~~~l~~al~-~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 11 GQILVDALRANGVERVFC---VPGESYLAVLDALH-DETDIRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred HHHHHHHHHHcCCCEEEe---CCCcchhHHHHHhh-ccCCCcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 45566666553 333332 2233322 2332 233 355555 8899999999999987 5444444 47888766
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEE
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCF 394 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i 394 (563)
++--+ ..|-..+.||+++..........-..+|...+..+++.+-.+ .+...++.++...+.+|++ ..++|++|
T Consensus 86 ~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l 163 (557)
T PRK08199 86 ASIGV-HTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVL 163 (557)
T ss_pred HHHHH-HHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 66665 456778999999874433211111235555555677765554 3445788888888888876 23589999
Q ss_pred EecCCC
Q 008493 395 RYPRGN 400 (563)
Q Consensus 395 ~~~~~~ 400 (563)
.++...
T Consensus 164 ~iP~dl 169 (557)
T PRK08199 164 ALPEDV 169 (557)
T ss_pred EcCHhH
Confidence 998654
No 186
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=96.04 E-value=0.01 Score=51.77 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhh--hhhhhcCCCc
Q 008493 289 AEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFD--VTFMACLPNM 366 (563)
Q Consensus 289 ~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d--~~~~~~~p~~ 366 (563)
.|...+|+|+|+.++|.+|..-+-.+.+-.....+.+.--..++|..++..|+|...++=+.+-+... -.++. .-++
T Consensus 50 REEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe-~~~l 128 (172)
T COG4032 50 REEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILE-GLEL 128 (172)
T ss_pred chhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHh-hcCC
Confidence 47788999999999999998888655553333333222234588998888999974432222211110 01222 2356
Q ss_pred EEEecCCHHHHHHHHHHHHh---cCCCCEEEEecC
Q 008493 367 VVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 398 (563)
Q Consensus 367 ~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~ 398 (563)
..+.|-.|+|+..++..+.. +...|+.++++.
T Consensus 129 pt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 129 PTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 68999999998888876643 467898888754
No 187
>PRK12474 hypothetical protein; Provisional
Probab=96.03 E-value=0.97 Score=49.86 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=78.3
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++.+ -.|++++.||-|.|.. |.-.+|. |+++....++--+ ..+-..+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 66666 8899999999999976 7555544 4788876665444 35567899999986432221111123444444456
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
++.+-.+ .+...++.++..++++|++ ...+|++|.+++..
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 6655433 4567888999988888875 24589999998764
No 188
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.64 E-value=0.17 Score=46.31 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechh--hHHHHHHH
Q 008493 245 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS--FMQRAYDQ 322 (563)
Q Consensus 245 ~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~--f~~~a~dq 322 (563)
+.+.|.+.+ . +.+++ .|.|.....-.+....|.+|+..|---. .++.|.|++++-.++++.+.++ |++-..+
T Consensus 4 ~~~~l~~~l-~-d~~vv--~d~G~~~~~~~~~~~~~~~~~~~gsmG~-~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~e- 77 (157)
T cd02001 4 AIAEIIEAS-G-DTPIV--STTGYASRELYDVQDRDGHFYMLGSMGL-AGSIGLGLALGLSRKVIVVDGDGSLLMNPGV- 77 (157)
T ss_pred HHHHHHHhC-C-CCEEE--eCCCHhHHHHHHhhcCCCCEEeecchhh-HHHHHHHHHhcCCCcEEEEECchHHHhcccH-
Confidence 334555555 2 33333 2544322112223356788886322221 1236777776644677777544 4433322
Q ss_pred HHHHhccC-CCCeEEEE-eCCCCCCCCC--CCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 323 VVHDVDLQ-KLPVRFAM-DRAGLVGADG--PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 323 i~~~a~~~-~~pv~~v~-~~~G~~g~~G--~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+ ..+... ++|++++. ...++ +..+ .++....|+.-+..--|+..+...++.|+...+++++. .++|.+|..
T Consensus 78 l-~t~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 78 L-LTAGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H-HHHHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 334444 58987776 44443 2111 22222233332332235666777899999999999986 578988754
No 189
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.50 E-value=0.32 Score=54.23 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=79.1
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++.+ -.|.+++.+|.|+|.. |.-.++. ++++.+..++.-+ ..+-..+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 56665 8999999999999975 6544444 4788876666665 46678899999997543321111223555555566
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
++.+-.+ .....++.++..++.+|+.. .++|+||.++...
T Consensus 119 ~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 119 TMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred hcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 6765544 34456788888888888762 3589999998663
No 190
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.46 E-value=0.32 Score=54.36 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++.+ -.|+++..||.|+|.. |...+|.+ +++.+..++--+ ..+-..+.||+++.............+|......+
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCCCCCceecHHHH
Confidence 55554 7899999999999976 76666665 788876666555 45667899999997543321111123454444456
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
++.+-.+ .....+++++...++.|++. .++|+||.++...
T Consensus 122 ~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 122 SRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 6665543 35556888888888888762 4689999998764
No 191
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.45 E-value=0.41 Score=53.55 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=79.5
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++.+ -.|++++.||.|+|.. |.-.+|. +.++.+..++--+ ..+...+.||+++....+........||......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 55555 8999999999999975 7555554 4788876666555 46677899999997443321111234666555566
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
++.+-.+ .....++.++...++.|++ ..++|++|.+++..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 6765443 4556778888887777765 23589999998764
No 192
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.45 E-value=0.37 Score=54.00 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++.+ ..|++++.+|.|+|.. |...+|.+ +++.+..++.-+ ..+-..+.||+++.............+|...+..
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 355555 8999999999999976 75555554 788776666555 4566789999999744332111122466655556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++...++.|++ ...+|++|.++...
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 66665433 4666788888888887775 34689999998764
No 193
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.41 E-value=0.38 Score=53.38 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=80.8
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
=|++.+ ..|+++..||.|+|.. |...+|. ++++.+..++.-+ ..+...+.||+++.............||...+..
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 114 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVA 114 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhh
Confidence 356666 6999999999999975 6544444 4888876666555 4567789999999754332111223477776677
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++...+..|++ ..++|++|.++...
T Consensus 115 ~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 115 LFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 77776544 3555778888877777765 23579999988763
No 194
>PRK08322 acetolactate synthase; Reviewed
Probab=95.32 E-value=0.42 Score=53.11 Aligned_cols=148 Identities=14% Similarity=0.069 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCC-CEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVDK-DVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~~-~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.++|.+.+++.. +.++. +.|+..+ +.+. +-.=+++.+ ..|++++.||.|+|.. |...++. +.++.+..+
T Consensus 4 ~~~l~~~L~~~Gv~~vFg---~pG~~~~~l~dal~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~ 78 (547)
T PRK08322 4 ADLFVKCLENEGVEYIFG---IPGEENLDLLEALR-DSSIKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNL 78 (547)
T ss_pred HHHHHHHHHHcCCCEEEe---CCCcchHHHHHHHH-hcCCcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHH
Confidence 355666665543 33332 3333322 3442 222355555 8999999999999987 6554544 477877666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..|-..+.|++++..........-..||......+++.+-.+ .+...++.++..++..|+.. .++|++|.
T Consensus 79 ~~~i-~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 156 (547)
T PRK08322 79 VTGV-AYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLE 156 (547)
T ss_pred HHHH-HHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEE
Confidence 6555 466788999999874433211111235544445666655442 56778888888888888762 35799999
Q ss_pred ecCCC
Q 008493 396 YPRGN 400 (563)
Q Consensus 396 ~~~~~ 400 (563)
++...
T Consensus 157 iP~dv 161 (547)
T PRK08322 157 LPEDI 161 (547)
T ss_pred cChhh
Confidence 88763
No 195
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.20 E-value=0.54 Score=52.71 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++.+ ..|++++.||-|+|.. |...++.+ +++.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 137 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 466666 8999999999999976 65555444 788876666655 4667789999999754332111112355544445
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++...+.+|++ ...+|+||-++...
T Consensus 138 l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 138 ITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 66665544 3556677777777777765 23589999998764
No 196
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=95.19 E-value=0.44 Score=53.18 Aligned_cols=148 Identities=15% Similarity=0.115 Sum_probs=91.7
Q ss_pred HHHHHHHHhcC-CC-EEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHH
Q 008493 246 AEALIAEAEVD-KD-VVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQR 318 (563)
Q Consensus 246 ~~~l~~~~~~~-~~-v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~ 318 (563)
.+.|.+.+++. -+ ++-+ .|.+.+ +.+.+.-.=|++.+ ..|++++.||.|+|.. |...++. ++++.+..
T Consensus 13 ~~~i~~~L~~~Gv~~vFgi----pG~~~~~l~dal~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGY----PGGAVLPLYDAIYNFEGIRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred HHHHHHHHHHcCCCEEEec----CCcchHHHHHHHhhcCCceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 45666666654 33 3333 233322 33432212366666 8999999999999976 7555544 47888766
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEE
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCF 394 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i 394 (563)
++.-+ ..+-..+.||+++.............+|......+++.+-.+. ....++.++..++.+|+.. .++|+||
T Consensus 88 ~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l 165 (566)
T PRK07282 88 AITGI-ADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVI 165 (566)
T ss_pred HHHHH-HHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 66555 4566789999999754332111112345444445666655443 4556788888888887763 3589999
Q ss_pred EecCCC
Q 008493 395 RYPRGN 400 (563)
Q Consensus 395 ~~~~~~ 400 (563)
.++...
T Consensus 166 ~iP~Dv 171 (566)
T PRK07282 166 DLPKDV 171 (566)
T ss_pred eCChhh
Confidence 988764
No 197
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.18 E-value=0.51 Score=52.71 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=91.8
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.+.|.+.+++. -+.++. +.|+..+ +.+.+. .-+++.+ -.|++++.||.|+|.. |...++. ++++.+..+
T Consensus 18 a~~l~~~L~~~GV~~vFG---ipG~~~~~l~dal~~~-~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 92 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFG---YPGGAILPVYDALYES-GLKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNL 92 (570)
T ss_pred HHHHHHHHHHcCCCEEEE---cCCcchHHHHHHHHhc-CCcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 45666666554 333332 2233322 334322 2466665 7999999999999976 7555544 478887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..+-..+.||+++..........-..+|......+++.+-.+ .+...+++++..+++.|+.. .++|++|.
T Consensus 93 ~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~ 170 (570)
T PRK06725 93 VTGL-ADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLID 170 (570)
T ss_pred HHHH-HHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEc
Confidence 6555 456678999999874433211111234444444566655443 35567888999888888762 36899999
Q ss_pred ecCCC
Q 008493 396 YPRGN 400 (563)
Q Consensus 396 ~~~~~ 400 (563)
++...
T Consensus 171 iP~Dv 175 (570)
T PRK06725 171 IPKDV 175 (570)
T ss_pred cccch
Confidence 88764
No 198
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.18 E-value=0.46 Score=53.13 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-+++.+ -.|+++..||.|+|.. |...+|. ++++.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 355555 8999999999999976 6544444 4788876666655 4667789999999754332111112366555556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++..++++|+.. .++|++|.++...
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77766554 45666788888888877752 3689999998763
No 199
>PRK07064 hypothetical protein; Provisional
Probab=95.13 E-value=0.58 Score=51.96 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=78.2
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCC-CCCCCChhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFD 356 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~-G~tH~~~~d 356 (563)
|++.+ ..|+++..||.|+|.. |...++. ++++....++--+ ..+...+.||+++...... .+.+ +..|+...+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 55554 8899999999999976 6555544 4788876666655 4567789999998743221 1222 233554455
Q ss_pred hhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 357 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 357 ~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
..+++.+-.+ .+...++.++...+.+|++ ..++|++|.++...
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 5677766543 4555778888877777765 24789999988653
No 200
>PRK08611 pyruvate oxidase; Provisional
Probab=95.10 E-value=0.6 Score=52.21 Aligned_cols=117 Identities=12% Similarity=-0.022 Sum_probs=78.9
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++. ...|++++.||.|+|.. |...++.+ +++.+..++--+ ..|...+.||+++.............+|......
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~ 121 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEK 121 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHH
Confidence 35555 58899999999999975 65544443 788876666655 4667789999999754432111122355544556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++...+.+|+. ..++|++|.++...
T Consensus 122 l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 122 MFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred Hhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 77766544 3566778888887777765 24689999998764
No 201
>PRK05858 hypothetical protein; Provisional
Probab=95.09 E-value=0.59 Score=51.89 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHH
Q 008493 247 EALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 320 (563)
Q Consensus 247 ~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~ 320 (563)
++|.+.+++. -+.++. +.|+..+ +.+. +..=|++.+ ..|++++.||.|+|.. |.-.++. ++++.+..++
T Consensus 9 ~~l~~~L~~~GV~~vFg---~pG~~~~~l~dal~-~~~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~ 83 (542)
T PRK05858 9 RLAARRLKAHGVDTMFT---LSGGHLFPLYDGAR-EEGIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGM 83 (542)
T ss_pred HHHHHHHHHcCCCEEEe---CCCcchHHHHHHHH-hcCCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHH
Confidence 5555555543 343332 3333332 3332 334566666 8999999999999987 5444444 4677776666
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEe
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 396 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~ 396 (563)
--+ ..+...+.||+++.......-.....+|......+++.+-.+ .....++.++...+..|+.. .++||+|.+
T Consensus 84 ~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 161 (542)
T PRK05858 84 SAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDF 161 (542)
T ss_pred HHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEc
Confidence 555 466788999999874433211122335655555677766553 45667788888888887752 357999998
Q ss_pred cCCC
Q 008493 397 PRGN 400 (563)
Q Consensus 397 ~~~~ 400 (563)
+...
T Consensus 162 P~dv 165 (542)
T PRK05858 162 PMDH 165 (542)
T ss_pred Chhh
Confidence 8763
No 202
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.02 E-value=0.64 Score=51.88 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=79.2
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++.+ ..|++++.||.|+|.. |...++. ++++.+..++--+ ..+-..+.||+++.............+|...+..+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 55554 8999999999999975 6555544 4788876666665 46677899999987543321111123555555566
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 399 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~ 399 (563)
++.+-.+ .....++.++..+++.|++. .++|++|.++..
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 6655443 45678999999999998863 347999998865
No 203
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=95.01 E-value=0.66 Score=51.89 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=77.1
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
=+++.+ -.|.++..||.|.|.. |.-.+|. ++++.+..++--+ ..+-..+.||+++............++|...+..
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 455655 7899999999999976 6555544 4788876666555 4567789999999754332222334466655556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++...+.+|++ ..++|++|.++...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 66655433 2445556666666655544 36799999998764
No 204
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.99 E-value=0.26 Score=45.35 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=71.9
Q ss_pred eecccchHHHHHHHHHHhhCCCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCC-----CChh
Q 008493 284 FDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH-----CGSF 355 (563)
Q Consensus 284 i~~gi~E~~~~~~a~G~a~~G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH-----~~~~ 355 (563)
+-..-.|.+++.||.|.+..-...++. +.++.+..+..-+ ..+...+.||+++...... .+.....| +...
T Consensus 38 ~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (162)
T cd07038 38 WVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFD 116 (162)
T ss_pred EEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeecccccchH
Confidence 334589999999999999875233333 3677776677666 4567789999999743321 12212223 2222
Q ss_pred -hhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecC
Q 008493 356 -DVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 398 (563)
Q Consensus 356 -d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~ 398 (563)
+..+++.+-.+ .....++.++..++++|+. ..++|++|-++|
T Consensus 117 d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 117 VFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred HHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 34566655444 3445677888888887775 245899997764
No 205
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.94 E-value=0.53 Score=52.61 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.+.|.+.+++. -+-++. +.|+..+ +.+. +.+-+++.+ ..|.+++.+|.|+|.. |...++. ++++.+..+
T Consensus 19 ~~~i~~~L~~~Gv~~vFg---~pG~~~~~l~~al~-~~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~ 93 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFG---YPGGAVLPLYDALY-DCGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNV 93 (571)
T ss_pred HHHHHHHHHHcCCCEEEe---CCCcchHHHHHHHH-hcCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 45566666554 333332 2233322 3343 235678866 9999999999999976 6545544 478877666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..|-..+.||+++..........-..+|...+..+++.+-.+ .+...++.++..+++.|+.. .++|++|.
T Consensus 94 ~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 171 (571)
T PRK07710 94 VTGL-ADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLID 171 (571)
T ss_pred HHHH-HHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 5555 456678999999864333211111224444555666765544 35667778888888887762 25899999
Q ss_pred ecCC
Q 008493 396 YPRG 399 (563)
Q Consensus 396 ~~~~ 399 (563)
++..
T Consensus 172 iP~D 175 (571)
T PRK07710 172 IPKD 175 (571)
T ss_pred cChh
Confidence 8865
No 206
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.92 E-value=0.6 Score=52.06 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=91.4
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.++|.+.+++. -+.++.. .|+..+ +.+.+.-.=|++. ...|++++.||.|+|.. |.-.++. ++++.+..+
T Consensus 16 ~~~l~~~L~~~GV~~vFgv---pG~~~~~l~dal~~~~~i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGI---PGGAILPLYDALSQSTQIRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred HHHHHHHHHHcCCCEEEeC---CCcccHHHHHHHhccCCceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 45566666554 3443332 233322 3343221246676 48999999999999987 5444444 478887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..|...+.||+++.............+|......+++.+-.+ .+...++.++...+.+|++. .++|++|.
T Consensus 92 l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~ 169 (564)
T PRK08155 92 VTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWID 169 (564)
T ss_pred HHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 6665 457788999999874433211112235554444566665544 33445788888888888762 35899999
Q ss_pred ecCCC
Q 008493 396 YPRGN 400 (563)
Q Consensus 396 ~~~~~ 400 (563)
++...
T Consensus 170 iP~Dv 174 (564)
T PRK08155 170 IPKDV 174 (564)
T ss_pred cCHhH
Confidence 87653
No 207
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.88 E-value=0.26 Score=45.77 Aligned_cols=115 Identities=13% Similarity=0.036 Sum_probs=67.0
Q ss_pred hCCCCeeeccc-c-hHHHHHHHHHHhhCC-CeeEEeechhhH-HHHHHHHHHHhccCCCCeEEEE-eCCCCCCCCCCC--
Q 008493 278 RFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAIYSSFM-QRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPT-- 350 (563)
Q Consensus 278 ~~p~r~i~~gi-~-E~~~~~~a~G~a~~G-~~~~~~~~~~f~-~~a~dqi~~~a~~~~~pv~~v~-~~~G~~g~~G~t-- 350 (563)
..|.+++..+. . =-..+++|+|++++. -++++.+.++.. +.....+ ..+...++|++++. ...++ +.....
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~~~el-~ta~~~~lpv~ivv~NN~~~-~~~~~~~~ 113 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSGMEL-ETAVRYNLPIVVVVGNNGGW-YQGLDGQQ 113 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCCHHHH-HHHHHcCCCEEEEEEECccc-ccchhhhh
Confidence 45788886542 2 223556778888875 356666654432 2223444 56778899977766 33443 111000
Q ss_pred -------CC----Chhhhh-hhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 351 -------HC----GSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 351 -------H~----~~~d~~-~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+. ...|.. +.+. -|+..+...++.|+...+++++. .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 114 LSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 00 112222 2222 36677777899999999999976 578988753
No 208
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.87 E-value=0.69 Score=52.14 Aligned_cols=150 Identities=19% Similarity=0.148 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 320 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~ 320 (563)
.++|.+.+++..-=.+++ +.|+..+ +.+.+.-.=+++.+ ..|++++.||.|+|.. |...++. +.++.+..++
T Consensus 34 a~~l~~~L~~~GV~~vFg--ipG~~~~~l~dal~~~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l 110 (612)
T PRK07789 34 AQAVVRSLEELGVDVVFG--IPGGAILPVYDPLFDSTKVRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLV 110 (612)
T ss_pred HHHHHHHHHHCCCCEEEE--cCCcchHHHHHHHhccCCceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 466666666543222332 2333322 33322112355555 8999999999999976 7555544 4788776666
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEe
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 396 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~ 396 (563)
--+ ..|...+.||+++.............+|......+++.+-.+ .+...++.++..++++|+.. .++|++|.+
T Consensus 111 ~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 188 (612)
T PRK07789 111 TPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred HHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 555 466778999999975443211111235544444566665443 34567888988888888762 358999998
Q ss_pred cCCC
Q 008493 397 PRGN 400 (563)
Q Consensus 397 ~~~~ 400 (563)
+...
T Consensus 189 P~Dv 192 (612)
T PRK07789 189 PKDA 192 (612)
T ss_pred ccch
Confidence 8763
No 209
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.86 E-value=0.69 Score=51.42 Aligned_cols=148 Identities=16% Similarity=0.068 Sum_probs=91.8
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.+.|.+.+++. -+.++.. .|+..+ +.+.+ ..=|++.+ ..|++++.||.|+|.. |...++. ++++.+..+
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~---pG~~~~~l~~al~~-~~i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~ 78 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGY---PGGAIMPVYDALYD-GGVEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNL 78 (548)
T ss_pred HHHHHHHHHHcCCCEEEeC---CCcchHHHHHHHHh-cCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHH
Confidence 35566666554 3333332 233322 33422 22355555 8999999999999986 7555544 478887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..+-..+.||+++..........-..+|......+++.+-.+. +...++.++..+++.|++. .++|++|.
T Consensus 79 ~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 156 (548)
T PRK08978 79 ITGL-ADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVD 156 (548)
T ss_pred HHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 6555 4667789999999754432111112355555556677665543 3445788888888888762 35899999
Q ss_pred ecCCC
Q 008493 396 YPRGN 400 (563)
Q Consensus 396 ~~~~~ 400 (563)
++...
T Consensus 157 iP~dv 161 (548)
T PRK08978 157 IPKDI 161 (548)
T ss_pred cChhh
Confidence 88753
No 210
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.85 E-value=0.65 Score=52.18 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAY 320 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~ 320 (563)
.++|.+.+++..-=.+++ +.|+..+ +.+.+.-.=|++.+ ..|++++.||.|+|.. |...++.+ +++.+..++
T Consensus 14 a~~l~~~L~~~GV~~vFG--vpG~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l 90 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFG--YPGGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAV 90 (595)
T ss_pred HHHHHHHHHHCCCCEEEE--ccCcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHH
Confidence 566777776653223333 3333322 33422212466666 8999999999999965 76555554 788876666
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEe
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRY 396 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~ 396 (563)
--+ ..+-..+.||+++.............+|......+++.+-.+ .+...++.++...+..|+.. .++|++|.+
T Consensus 91 ~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 91 TPL-QDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHH-HHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 555 456678999999874433211111245555444565654332 34567888888888888762 368999998
Q ss_pred cCCC
Q 008493 397 PRGN 400 (563)
Q Consensus 397 ~~~~ 400 (563)
+...
T Consensus 169 P~Dv 172 (595)
T PRK09107 169 PKDV 172 (595)
T ss_pred CCCh
Confidence 8764
No 211
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.82 E-value=0.7 Score=51.65 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=90.6
Q ss_pred HHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCC---CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHH
Q 008493 247 EALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFP---TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 317 (563)
Q Consensus 247 ~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p---~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~ 317 (563)
+.|.+.+++. -+.++. +.|+..+ +.+.+..+ =|++.+ ..|++++.||.|+|.. |.-.+|. ++++.+.
T Consensus 6 ~~l~~~L~~~GV~~vFg---~pG~~~~~l~dal~~~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 6 RILVDSLKREGVKVIFG---IPGLSNMQIYDAFVEDLANGELRHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred HHHHHHHHHcCCCEEEe---CCCcchHHHHHHHHhhccCCCCeEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 5556665554 333332 2333322 34433222 245554 8899999999999976 6555554 4888876
Q ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEE
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSC 393 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~ 393 (563)
.++--+ ..|-..+.||+++..........-..+|......+++.+-.+ .+...++.++...+.+|+. ..++|++
T Consensus 82 N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~ 159 (572)
T PRK06456 82 NLVTGL-ITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVV 159 (572)
T ss_pred HHHHHH-HHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 666665 466778999999874433211111224444444666765554 3444678888888888775 2458999
Q ss_pred EEecCCC
Q 008493 394 FRYPRGN 400 (563)
Q Consensus 394 i~~~~~~ 400 (563)
|.++...
T Consensus 160 l~iP~Dv 166 (572)
T PRK06456 160 IDIPRDI 166 (572)
T ss_pred EecChhH
Confidence 9998653
No 212
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.78 E-value=0.78 Score=51.31 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=74.3
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++.+ -.|+++..||.|+|.. |.-.+|.+ .++....+..-+ ..+...+.||+++.............||...+..+
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l 120 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL 120 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhhh
Confidence 45544 6899999999999987 54444443 677766555555 46677899999986432221111223666555567
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
++.+-.+ .....++.++...+++|+. ..++|++|.++...
T Consensus 121 ~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 121 FRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred cccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 7755433 2346677776666666654 34689999987653
No 213
>PRK08617 acetolactate synthase; Reviewed
Probab=94.72 E-value=0.72 Score=51.28 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=80.2
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-+++.+ ..|++++.||.|.|.. |.-.+|. ++++.+..++--+ ..|...+.||+++..........-..||...+..
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~ 120 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVA 120 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccchhh
Confidence 456655 8999999999999987 5544444 4788776666555 4567789999998643332111123467666667
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++...+.+|++. .++|++|.++...
T Consensus 121 l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 121 LFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 77776544 45667888888888888762 3579999988653
No 214
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.70 E-value=0.78 Score=51.29 Aligned_cols=117 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++.+ -.|++++.||.|+|.. |...++.+ +++.+..++--+ ..+-..+.||+++.............+|......
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIG 120 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhH
Confidence 456666 8999999999999976 76555554 788776665555 4566789999998744332111112355444445
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++...++.|++ ..++|++|.++...
T Consensus 121 ~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 121 ISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred HhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 66655443 3556678888888888876 24589999988653
No 215
>PRK07524 hypothetical protein; Provisional
Probab=94.68 E-value=0.85 Score=50.50 Aligned_cols=149 Identities=19% Similarity=0.115 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAY 320 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~ 320 (563)
.+.|.+.+++..==.+++ +.|+..+ +.+.+ ..-|++.+ -.|.+++.||.|.|.. |.-.+|. +.++.+..++
T Consensus 5 a~~l~~~L~~~Gv~~vFg--~pG~~~~~~~dal~~-~~i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~ 80 (535)
T PRK07524 5 GEALVRLLEAYGVETVFG--IPGVHTVELYRGLAG-SGIRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIA 80 (535)
T ss_pred HHHHHHHHHHcCCCEEEe--CCCcchHHHHHHHhh-cCCcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 456666666543222222 3344332 33322 12355655 8999999999999976 6544444 4788876666
Q ss_pred HHHHHHhccCCCCeEEEEeCCCC--CCCC-CCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEE
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSC 393 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~--~g~~-G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~ 393 (563)
--+ ..|...+.||+++...... .+.. +..|+...+..+++.+-. -.+...++.++...+.+|+. ..++|++
T Consensus 81 ~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~ 158 (535)
T PRK07524 81 TAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVH 158 (535)
T ss_pred HHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 665 5667789999998744332 1221 234543344566776543 34777788888888888875 2468999
Q ss_pred EEecCCC
Q 008493 394 FRYPRGN 400 (563)
Q Consensus 394 i~~~~~~ 400 (563)
|.+++..
T Consensus 159 l~iP~Dv 165 (535)
T PRK07524 159 IEIPLDV 165 (535)
T ss_pred EEeCHhH
Confidence 9998764
No 216
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.52 E-value=1.2 Score=50.09 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC--CCeeEEe-echhhHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE--GLKPFCA-IYSSFMQR 318 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~--G~~~~~~-~~~~f~~~ 318 (563)
.+.|.+.+++..==.+++ +.|...+ +.+.+ .+ -|++.+ -.|++++.||-|+|.. |.-.++. ++++.+..
T Consensus 6 a~~l~~~L~~~GV~~vFG--vpG~~~~~l~dal~~-~~~i~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 6 VDAAVYVLEKEGITTAFG--VPGAAINPFYSALKA-HGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCCCcHHHHHHHhh-cCCCcEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 455666666543222222 2233322 33422 22 355554 7799999999999975 4444443 47787766
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEE
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCF 394 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i 394 (563)
++--+ ..+...+.||+++.............+|......+++.+-.+ .....++.++...+++|++ ..++|++|
T Consensus 82 ~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l 159 (588)
T TIGR01504 82 MITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLI 159 (588)
T ss_pred HHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEE
Confidence 65555 456678999999974433211112235554445666765443 3455678888888888876 24579999
Q ss_pred EecCCC
Q 008493 395 RYPRGN 400 (563)
Q Consensus 395 ~~~~~~ 400 (563)
.++...
T Consensus 160 ~iP~Dv 165 (588)
T TIGR01504 160 DLPFDV 165 (588)
T ss_pred EeCcch
Confidence 998764
No 217
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.51 E-value=0.98 Score=50.52 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=91.4
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.+.|.+.+++. -+.++. +.|+..+ +.+.+.-.-|++.+ ..|++++.||.|+|.. |...++. +.++.+..+
T Consensus 7 a~~l~~~L~~~GV~~vFg---~pG~~~~~l~~al~~~~~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 82 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFG---YPGGSVLDIYDAIHTLGGIEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNA 82 (574)
T ss_pred HHHHHHHHHHcCCCEEEe---CCCcchHHHHHHHhhcCCCeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHH
Confidence 45666666654 333332 3333322 33322112356665 8999999999999976 6554444 478877666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..+-..+.||+++.............+|......+++.+-.+ .....++.++...+..|+.. .++|++|.
T Consensus 83 l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 160 (574)
T PRK06882 83 ITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVID 160 (574)
T ss_pred HHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 6555 456778999999864433211112235555455666655433 45667888888888888762 35899999
Q ss_pred ecCC
Q 008493 396 YPRG 399 (563)
Q Consensus 396 ~~~~ 399 (563)
++..
T Consensus 161 iP~D 164 (574)
T PRK06882 161 IPKD 164 (574)
T ss_pred cCHH
Confidence 8875
No 218
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.48 E-value=0.89 Score=50.55 Aligned_cols=117 Identities=10% Similarity=-0.035 Sum_probs=77.2
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
=|++.+ ..|+++..||.|+|.. |.-.+|. +.++.+..++--+ ..|-..+.||+++.............+|......
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 344444 8999999999999987 5444443 4788776666555 4667789999998643322111122355555556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++...+++|++ ..++|++|.++...
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 66655443 4666777787777777765 23699999998664
No 219
>PLN02470 acetolactate synthase
Probab=94.46 E-value=0.9 Score=50.94 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=79.0
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
=|++.+ -.|++++.||.|+|.. |...+|. ++++.+..++--+ ..|-..+.||+++..........-..+|...+..
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 129 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCCCcCcccchhh
Confidence 456666 8999999999999976 7555554 4888886666555 4566789999998643332111112245444445
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++..+++.|++. .++||+|.++...
T Consensus 130 l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 130 VTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred hhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 66654433 34456888999989888763 3589999998763
No 220
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.37 E-value=1 Score=50.54 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=78.5
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++.+ ..|.+++.||.|+|.. |.-.++. ++++.+..++--+ ..+-..+.||+++.............+|...+..+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 56665 7999999999999976 6544444 4788776666555 46678899999987443321112233555555566
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
++.+-.+ .+.-.++.++...++.|++. .++|++|.++...
T Consensus 118 ~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred Hhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 6765544 34456778888888888763 3589999988653
No 221
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.36 E-value=0.65 Score=46.66 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechhh--HHH
Q 008493 242 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSF--MQR 318 (563)
Q Consensus 242 ~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~f--~~~ 318 (563)
..++.++|.++....++.++ ..|.|-+..+..+ +.-..+.+.. -.++.+|.|++++. -++++.+.++. +.-
T Consensus 19 l~al~~al~~l~~~~~~~iv-vsdiGc~~~~~~~---~~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 19 LEALRKALAELGIPPENVVV-VSGIGCSSNLPEF---LNTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEE-EECCchhhhhhhh---ccCCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 45666666555433445444 4577755432222 1111222222 44567788888773 35566654443 344
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCC-CCCC--------------------ChhhhhhhhcCCCcEEEecCCHHHH
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADG-PTHC--------------------GSFDVTFMACLPNMVVMAPSDEAEL 377 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G-~tH~--------------------~~~d~~~~~~~p~~~v~~P~~~~e~ 377 (563)
.+..+ ..+...++|++++.-.-+..|.-| ..+. +...++.....+.+....+.++.|+
T Consensus 93 g~~eL-~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l 171 (279)
T PRK11866 93 GLGHL-PHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL 171 (279)
T ss_pred cHHHH-HHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH
Confidence 45555 467888999887773322211111 1110 1111222223344456667999999
Q ss_pred HHHHHHHHhcCCCCEEEEe
Q 008493 378 FHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 378 ~~~l~~a~~~~~~P~~i~~ 396 (563)
...+++|++ .++|++|-.
T Consensus 172 ~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 172 KEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999987 689988754
No 222
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.36 E-value=1.1 Score=50.38 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=91.2
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC--CCeeEEe-echhhHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE--GLKPFCA-IYSSFMQR 318 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~--G~~~~~~-~~~~f~~~ 318 (563)
.++|.+.+++. -+.++. +.|+..+ +.+.+.-.=|++.+ ..|++++.||.|+|.. |...+|. |+++.+..
T Consensus 7 ~~~l~~~L~~~Gv~~vFg---~pG~~~~~l~dal~~~~~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFG---VPGAAINPFYSAMRKHGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred HHHHHHHHHHcCCCEEEe---CCCcccHHHHHHHhhcCCCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 45566666654 333332 2233322 34432212467776 8999999999999975 5444333 57887755
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEE
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCF 394 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i 394 (563)
++--+ ..+...+.||+++..........-..+|......+++.+-.+ .....++.++...++.|++. .++|++|
T Consensus 83 ~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (591)
T PRK11269 83 MITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLI 160 (591)
T ss_pred HHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 55555 456778999999874433211111235555555667755433 35567888888888888762 3579999
Q ss_pred EecCCC
Q 008493 395 RYPRGN 400 (563)
Q Consensus 395 ~~~~~~ 400 (563)
-++...
T Consensus 161 ~iP~Dv 166 (591)
T PRK11269 161 DLPFDV 166 (591)
T ss_pred EeChhh
Confidence 998663
No 223
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=94.33 E-value=0.75 Score=46.40 Aligned_cols=144 Identities=11% Similarity=0.079 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccch---HHHHHHHHHHhhCC-CeeEEeechh--h
Q 008493 242 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAE---QHAVTFAAGLACEG-LKPFCAIYSS--F 315 (563)
Q Consensus 242 ~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E---~~~~~~a~G~a~~G-~~~~~~~~~~--f 315 (563)
..++.++|.++.-...+.+++ .|.|-+.. .| +|++..--- -.++.+|.|++++. -++++.+.++ |
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~~-------~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSAK-------TP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCcccc-------cC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 456667777665443455444 48775542 33 566543221 23566788888874 4556666444 4
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEe-CCCC--CC-CCCCCC-----------CC---hhhh---hhhhcCCCcEEEecCCH
Q 008493 316 MQRAYDQVVHDVDLQKLPVRFAMD-RAGL--VG-ADGPTH-----------CG---SFDV---TFMACLPNMVVMAPSDE 374 (563)
Q Consensus 316 ~~~a~dqi~~~a~~~~~pv~~v~~-~~G~--~g-~~G~tH-----------~~---~~d~---~~~~~~p~~~v~~P~~~ 374 (563)
+......+ ..++..++|++++.- ..++ ++ ...++. .. ..+. ++.....-.-...+.++
T Consensus 84 ~~mg~~eL-~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHF-VAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHH-HHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 32334444 467788999888773 3322 22 110110 00 0011 12222211222336999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEe
Q 008493 375 AELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 375 ~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
.|+...+++|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999987 688988754
No 224
>PRK08266 hypothetical protein; Provisional
Probab=94.24 E-value=1.2 Score=49.47 Aligned_cols=117 Identities=19% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCC-CCCCCChh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSF 355 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~-G~tH~~~~ 355 (563)
=|++.+ ..|++++.||.|+|.. |...++. +.++.+..++.-+ ..|...+.||+++...... .+.. +..|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 456655 8999999999999976 6544443 4788776666655 4667889999998743322 1222 22344335
Q ss_pred hhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 356 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 356 d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+..+++.+-.+ .....++.++...++.|++. ..+|++|-++...
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 55677766543 45666778888888777752 4689999988653
No 225
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=94.21 E-value=0.79 Score=51.51 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCC-C-EEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHH
Q 008493 246 AEALIAEAEVDK-D-VVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 317 (563)
Q Consensus 246 ~~~l~~~~~~~~-~-v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~ 317 (563)
.++|.+.+++.. + ++-+- |++.+ +.+.+..+ =+++.+ -.|++++.+|-|+|.. |...+|. ++++.+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYP----GDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeC----CCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 466677666542 3 33332 33322 33433222 455655 8999999999999976 6555544 4788886
Q ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCC-CcEEEecCCHHHHHHHHHHHHh---cCCCCEE
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLP-NMVVMAPSDEAELFHMVATAAA---IDDRPSC 393 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p-~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~ 393 (563)
.++.-+ ..|-..+.||+++.............+|......+++.+- .+ .....++.++...+++|+. ..++|++
T Consensus 81 n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~ 158 (597)
T PRK08273 81 HLLNGL-YDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTA 158 (597)
T ss_pred HHHHHH-HHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 666665 4666789999998744332111112344444445666543 22 4566677777777777665 2468999
Q ss_pred EEecCCC
Q 008493 394 FRYPRGN 400 (563)
Q Consensus 394 i~~~~~~ 400 (563)
|.++...
T Consensus 159 i~iP~Dv 165 (597)
T PRK08273 159 VILPNDV 165 (597)
T ss_pred EEeCcch
Confidence 9998764
No 226
>PLN02573 pyruvate decarboxylase
Probab=94.18 E-value=0.81 Score=51.21 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 245 FAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 245 ~~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
..++|.+.+++..-=.+++ +.|+..+ +.+.+.-.=+++.+ ..|+++..||-|.|.. | .++|. ++++.+..+
T Consensus 18 ~a~~l~~~L~~~Gv~~vFG--vpG~~~~~l~dal~~~~~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~ 93 (578)
T PLN02573 18 LGRHLARRLVEIGVTDVFS--VPGDFNLTLLDHLIAEPGLNLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSV 93 (578)
T ss_pred HHHHHHHHHHHcCCCEEEE--CCCCchHHHHHHHhhcCCceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHH
Confidence 3466666666543222222 2333322 33322111244444 7899999999999975 8 66655 477877656
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCC------hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cC
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG------SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---ID 388 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~------~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~ 388 (563)
..-+ ..+-..+.||+++...... .+.++..|+. ..+..+++.+-.+ .....++.++...++.|++ ..
T Consensus 94 ~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~ 171 (578)
T PLN02573 94 LNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKE 171 (578)
T ss_pred HHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5555 4556679999999754332 2333444542 1223445544332 3445566666666665554 24
Q ss_pred CCCEEEEecCCC
Q 008493 389 DRPSCFRYPRGN 400 (563)
Q Consensus 389 ~~P~~i~~~~~~ 400 (563)
++|+||.++...
T Consensus 172 ~gPV~l~iP~Dv 183 (578)
T PLN02573 172 SKPVYISVSCNL 183 (578)
T ss_pred CCCEEEEeehhh
Confidence 689999998764
No 227
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.04 E-value=1.3 Score=49.14 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHH
Q 008493 247 EALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYD 321 (563)
Q Consensus 247 ~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~d 321 (563)
+.|.+.+++..==.+++ +.|...+ +.|.+. .=|++-+ --|++++.||.|.|.. |.-.+|-. .++.+..+..
T Consensus 6 ~~lv~~L~~~GV~~VFG--iPG~~i~~~~dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~t 81 (550)
T COG0028 6 EALVEALEANGVDTVFG--IPGGSILPLYDALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLT 81 (550)
T ss_pred HHHHHHHHHcCCcEEEe--CCCccHHHHHHHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHH
Confidence 55666666654323333 3333322 344444 4566666 7899999999999986 77655554 7888766655
Q ss_pred HHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEec
Q 008493 322 QVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYP 397 (563)
Q Consensus 322 qi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~ 397 (563)
-+ .+|-+-+.|++++..+.......-..+|......+++.+-.+ .+...+++|+...+++|++. ..+|++|-++
T Consensus 82 gl-a~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 82 GL-ADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred HH-HHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 55 566778999999864332211112334545444555544332 47888899999999999872 3479999887
Q ss_pred CCC
Q 008493 398 RGN 400 (563)
Q Consensus 398 ~~~ 400 (563)
+..
T Consensus 160 ~Dv 162 (550)
T COG0028 160 KDV 162 (550)
T ss_pred hhH
Confidence 764
No 228
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.02 E-value=1.4 Score=49.16 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=89.6
Q ss_pred HHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.++|.+.+++. -+.++. +.|+..+ +.+.+ ..=+++.+ ..|++++.||.|++.. |...++. ++++.+..+
T Consensus 11 ~~~l~~~L~~~Gv~~vFg---ipG~~~~~l~~al~~-~~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~ 85 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFG---YPGGAIIPVYDELYD-SDLRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNL 85 (561)
T ss_pred HHHHHHHHHHcCCCEEEE---CCCcchHHHHHHHhh-CCCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence 45555655543 333332 2333332 34432 23456666 8999999999999976 7554544 478887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFR 395 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~ 395 (563)
+--+ ..+-..+.||+++.............+|......+++.+-.+ .+.-.++.++..++++|++. .++|+||.
T Consensus 86 ~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~ 163 (561)
T PRK06048 86 VTGI-ATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLID 163 (561)
T ss_pred HHHH-HHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6665 466788999999864433211111123434334455554332 24457788888888888762 36899999
Q ss_pred ecCCC
Q 008493 396 YPRGN 400 (563)
Q Consensus 396 ~~~~~ 400 (563)
++...
T Consensus 164 iP~dv 168 (561)
T PRK06048 164 LPKDV 168 (561)
T ss_pred cChhh
Confidence 98653
No 229
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=93.97 E-value=1.3 Score=49.58 Aligned_cols=117 Identities=14% Similarity=0.002 Sum_probs=77.0
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-|++.+ -.|++++.||.|++.. |.-.+|.+ .++.+..++--+ ..+-..+.||+++..........-..+|...+..
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~ 119 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDR 119 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCccccChhh
Confidence 345655 7899999999999987 55555443 677776665555 4667789999998743322111112355555556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .+...++.++...+..|++ ...+|++|-++...
T Consensus 120 l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 120 LFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred hcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 66654332 4677788888887777765 34689999988653
No 230
>PRK06163 hypothetical protein; Provisional
Probab=93.95 E-value=3.3 Score=39.56 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCc-ChHHHHHhCCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechh--hHHHHHHH
Q 008493 247 EALIAEAEVDKDVVAIHAAMGGGT-GLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQ 322 (563)
Q Consensus 247 ~~l~~~~~~~~~v~~~~~D~~~s~-~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~--f~~~a~dq 322 (563)
+.|.+.+..+ ++++ .|.|... ..... ...|.+++..|- =-..+.+|+|++++. -++++.+.++ |++..- .
T Consensus 20 ~~l~~~l~~~-~~iv--~D~G~~~~~~~~~-~~~~~~~~~~Gs-MG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~-e 93 (202)
T PRK06163 20 CRLVAKLKDE-EAVI--GGIGNTNFDLWAA-GQRPQNFYMLGS-MGLAFPIALGVALAQPKRRVIALEGDGSLLMQLG-A 93 (202)
T ss_pred HHHHHhcCCC-CEEE--ECCCccHHHHHHh-hcCCCCeEeecc-cccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHH-H
Confidence 4455555433 3433 3655321 12111 245667774221 112233677777763 4556666544 444433 3
Q ss_pred HHHHhccCCCCeEEEE-eCCCCCCCCCCCC--CChhhhh-hhhcCCCcE-EEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 323 VVHDVDLQKLPVRFAM-DRAGLVGADGPTH--CGSFDVT-FMACLPNMV-VMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 323 i~~~a~~~~~pv~~v~-~~~G~~g~~G~tH--~~~~d~~-~~~~~p~~~-v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+...+.+.++|++++. ...++.-..+..+ ....|+. +.+.+ |+. .+...++.|+...++++++ .++|++|-.
T Consensus 94 L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV 170 (202)
T PRK06163 94 LGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAV 170 (202)
T ss_pred HHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 3232234577877666 3444311111111 1112333 33333 554 5677899999999999986 588988755
No 231
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=93.83 E-value=1.4 Score=43.20 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHhhC-CCeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCCh--------------------
Q 008493 298 AGLACE-GLKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGS-------------------- 354 (563)
Q Consensus 298 ~G~a~~-G~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~-------------------- 354 (563)
.|++.+ --++++.+.++ |++..+..| ..+...++|++++.-+-+..|.-|.+++..
T Consensus 72 iGa~~a~p~r~VV~i~GDG~~~~m~~~eL-~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~ 150 (235)
T cd03376 72 LKALGRGKDITVVAFAGDGGTADIGFQAL-SGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKK 150 (235)
T ss_pred HHHhccCCCCeEEEEEcCchHHhhHHHHH-HHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccc
Confidence 343334 35777777544 334555665 567888999888874433222111111110
Q ss_pred ---hhhh-hhhc--CCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 355 ---FDVT-FMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 355 ---~d~~-~~~~--~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
.|+. +.+. .+.+..+...++.|+...++++++ .++|++|-.
T Consensus 151 ~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 151 QPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred cccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1222 2222 223334678999999999999987 578988754
No 232
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=93.68 E-value=1.4 Score=41.16 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=66.8
Q ss_pred hCCCCeeeccc--chHHHHHHHHHHhhC-CCeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEE-eCCCCCCC-----
Q 008493 278 RFPTRCFDVGI--AEQHAVTFAAGLACE-GLKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA----- 346 (563)
Q Consensus 278 ~~p~r~i~~gi--~E~~~~~~a~G~a~~-G~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~-~~~G~~g~----- 346 (563)
..|.+++..+- +=-..++.|.|++++ .-++++.+.++ |++.. ..+ ..+...++|++++. ...|+.-.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~-~eL-~ta~~~~l~vi~vV~NN~~~g~~~~~~~ 113 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS-QEL-ETAVRLKIPLVVLIWNDNGYGLIKWKQE 113 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH-HHH-HHHHHHCCCeEEEEEECCcchHHHHHHH
Confidence 45788886532 112244567787776 34566666444 54433 222 45677799988876 44443100
Q ss_pred --CC-CCCC--ChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 347 --DG-PTHC--GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 347 --~G-~tH~--~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
.+ ..+. ...|..-+..--|+..+...++.|+...++++++ .++|.+|-..
T Consensus 114 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 114 KEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 00 0111 1113222222236677888999999999999986 5889888653
No 233
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=93.60 E-value=1.8 Score=47.95 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=75.6
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCC-CCCCCCCChhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGSFDV 357 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g-~~G~tH~~~~d~ 357 (563)
-+++ ....|++++.+|.|+|.. |.-.++.+ .++.+..++--+ ..+...+.||+++........ ..+..++.....
T Consensus 49 i~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~ 126 (530)
T PRK07092 49 FRYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAA 126 (530)
T ss_pred CCEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHH
Confidence 3666 448999999999999986 54444443 566665555555 456678999998865433211 122222323334
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
.+++.+-.+.. ...++.++...+..|+.. .++|++|-++...
T Consensus 127 ~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 127 ELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred Hhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 67776665533 447788888888887762 2579999887653
No 234
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=93.57 E-value=1.1 Score=49.98 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCee-EEeechhhH
Q 008493 243 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFM 316 (563)
Q Consensus 243 ~a~~~~l~~~~~~~~-~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~-~~~~~~~f~ 316 (563)
.-..+.|.+.+++.. +-++. +.|+..+ +.+.+.-.=|++.+ ..|.+++.+|.|+|.. |... ++.|+++.+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFg---vpG~~~~~l~~~l~~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~ 84 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVI---APGSRSTPLTLAAAEHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAV 84 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHhCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHH
Confidence 445567777776653 33332 2233322 33322111355554 7899999999999976 5444 444588888
Q ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHH-----HHHHHHHH---HHhcC
Q 008493 317 QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEA-----ELFHMVAT---AAAID 388 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~-----e~~~~l~~---a~~~~ 388 (563)
..++--+ ..|...+.||+++.............+|...+..+++.+-...+-.|.... .+..+++. +....
T Consensus 85 ~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~ 163 (568)
T PRK07449 85 ANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQ 163 (568)
T ss_pred HhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 7776666 566788999999964433211112235665556777766545555565511 12334444 33345
Q ss_pred CCCEEEEecCC
Q 008493 389 DRPSCFRYPRG 399 (563)
Q Consensus 389 ~~P~~i~~~~~ 399 (563)
.+|++|-++..
T Consensus 164 ~GPV~i~iP~D 174 (568)
T PRK07449 164 AGPVHINCPFR 174 (568)
T ss_pred CCCEEEeCCCC
Confidence 78999999865
No 235
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=93.48 E-value=1.7 Score=40.48 Aligned_cols=118 Identities=17% Similarity=0.055 Sum_probs=68.2
Q ss_pred HHHhCCCCeeeccc-chHH-HHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEEe-CCCCCC---
Q 008493 275 FLRRFPTRCFDVGI-AEQH-AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVG--- 345 (563)
Q Consensus 275 ~~~~~p~r~i~~gi-~E~~-~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~~g--- 345 (563)
+....|.+++..+. .=.+ +++.|.|++++. .++++.+. +.|++-..| + ..+...++|++++.. ..++.-
T Consensus 36 ~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 36 LRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDLGFIKW 113 (178)
T ss_pred cccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCchhHHHH
Confidence 33455677776543 2222 555677777764 34555554 445544333 3 457778999877764 333210
Q ss_pred ----CCCC-CC--CChhhhh-hhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 346 ----ADGP-TH--CGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 346 ----~~G~-tH--~~~~d~~-~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
..++ .+ ....|+. +... -|+..+...++.|+...++++++ .++|++|..
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEA-MGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHH-CCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0011 01 1112332 3333 37778888999999999999976 578988755
No 236
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=93.48 E-value=1.3 Score=49.05 Aligned_cols=149 Identities=17% Similarity=0.060 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a 319 (563)
.+.|.+.+++..-=.+++ +.|++.+ +.+. +.+ -|++. .-.|+++.-||.|.|.. |...+|.+ +++....+
T Consensus 3 ~~~l~~~L~~~Gv~~vFG--vpG~~~~~l~~al~-~~~~i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 78 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFG--IPGDFALPFFKVIE-ETGILPLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNM 78 (535)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCcccHHHHHHHh-hCCCCeEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhh
Confidence 456667666553323332 3333333 3332 233 36666 48999999999999986 65555554 78887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCC--CCCCCCC-CCC--hh-hhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCC
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--SF-DVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDR 390 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~t-H~~--~~-d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~ 390 (563)
..-+ ..+...+.||+++...... .+.+... ||. .. +..+++.+-.+ .....++.++...+++|+. ..++
T Consensus 79 ~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~~~A~~~a~~~~g 156 (535)
T TIGR03394 79 VNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEIARVLGSARELSR 156 (535)
T ss_pred hhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHHHHHHHHHHHCCC
Confidence 6665 4566789999998743322 1222222 443 21 23555654333 2334455555555554443 2568
Q ss_pred CEEEEecCCC
Q 008493 391 PSCFRYPRGN 400 (563)
Q Consensus 391 P~~i~~~~~~ 400 (563)
|++|.++...
T Consensus 157 Pv~i~iP~Dv 166 (535)
T TIGR03394 157 PVYLEIPRDM 166 (535)
T ss_pred CEEEEechhh
Confidence 9999998764
No 237
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=93.47 E-value=1.3 Score=47.72 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=71.6
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
+++.+ ..|+++..||-|+|.. |...+|. |+++....++--+ ..+...+.||+++...... .+. ..+|...+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchh
Confidence 55554 8999999999999987 6544444 4788876666555 4667789999998644332 122 224555555
Q ss_pred hhhhcCCCcEE--EecCCH---HHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 358 TFMACLPNMVV--MAPSDE---AELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 358 ~~~~~~p~~~v--~~P~~~---~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
.+++.+-.+.. -.|.+. .++...+++|++ ..++|++|.++...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 66776554433 334431 114444454443 34689999998654
No 238
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.45 E-value=0.72 Score=52.04 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=78.9
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
=|++.+ -.|++++.+|.|.|.. |...++. +.++.+..++.-+ ..|..-+.||+++.............+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 467777 8999999999999976 6555555 3788876666555 5677889999998754332211122344444445
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....+++++...+.+|++. ..+|++|.++...
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 66654332 34577888888888888762 3589999988653
No 239
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.41 E-value=0.99 Score=42.01 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=65.5
Q ss_pred hCCCCee-ecccchH-HHHHHHHHHhhCCCeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEE-eCCCCCCCCC-CCC
Q 008493 278 RFPTRCF-DVGIAEQ-HAVTFAAGLACEGLKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADG-PTH 351 (563)
Q Consensus 278 ~~p~r~i-~~gi~E~-~~~~~a~G~a~~G~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~-~~~G~~g~~G-~tH 351 (563)
..|.+++ +.|..-. ..++.+.|++++--++++.+.++ |++-. ..+ ..+...++|++++. ...++ +... ..|
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~-~eL-~ta~~~~l~v~ivVlNN~~~-g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDL-NGL-LLGKQEPLNLTIVVINNNGG-GIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhH-HHH-HhccccCCCeEEEEEECCCC-chheeccC
Confidence 3467777 5554322 25577888877645666666544 44433 333 45667799987776 34432 1100 001
Q ss_pred -C--C----------hhhh-hhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 352 -C--G----------SFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 352 -~--~----------~~d~-~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+ . ..|. .+.+. -|+..+...++.|+...++++++ .++|.+|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKA-YGLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHH-cCCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 0 0111 12222 25667788899999999999976 578988743
No 240
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=93.17 E-value=1.6 Score=41.21 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=71.2
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhC--CCceEEeeccc---ccc-------CcHHHHHHHhccCCEEEEEeCCCCCChH
Q 008493 427 ERVALLGYGTA-VQSCLAASALLESN--GLRLTVADARF---CKP-------LDHALIRSLAKSHEVLITVEEGSIGGFG 493 (563)
Q Consensus 427 ~dv~iv~~G~~-~~~~~~Aa~~L~~~--Gi~v~vi~~~~---l~P-------f~~~~i~~~~~~~~~vvvvE~~~~gg~g 493 (563)
.||+|.|.|.. +.+++.|++.|++. ++++++|++.- |.| ++.+.+.++..+.++||+.= -|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFaf----HGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFAF----HGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEEE----SSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEEc----CCCH
Confidence 49999999987 58999999999987 99988776653 332 66778888888878887632 3566
Q ss_pred HHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 494 SHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 494 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
..|-..+..+. ...++..-|..+ -|..-++=+++-.+++|-=.++..+.+.+.+
T Consensus 111 ~~i~~L~~~R~---n~~~~hV~GY~E-eGttTTPFDM~vlN~~dRfhLa~dai~~~~~ 164 (203)
T PF09363_consen 111 WLIHRLLFGRP---NHDRFHVHGYRE-EGTTTTPFDMRVLNGMDRFHLAKDAIRRVPR 164 (203)
T ss_dssp HHHHHHTTTST---TGGGEEEEEE-S----SS-HHHHHHCTT-SHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCC---CCCCeEEEeecc-CCCcCchHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 67776665432 124455555433 2333455666667888877776666655533
No 241
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.01 E-value=0.91 Score=50.91 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=75.6
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
+++.+ ..|++++.||.|.|.. |...++. ++++.+..++--+ ..+-..+.||+++.............+|......+
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 130 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGI 130 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCccccchhhh
Confidence 56664 7999999999999976 6555544 4788876666555 56677899999997543321111112343333345
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
++.+-.+ .....++.++..++++|+.. .++|++|.++...
T Consensus 131 ~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 131 TLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 5544322 35566888888888888752 3579999988753
No 242
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.92 E-value=2.6 Score=46.97 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=78.3
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCC--CCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~--g~~G~tH~~~~d~ 357 (563)
|++.+ ..|++++.||-|+|.. |...+|.+ .++....+.--+ ..+-..+.||+++....... +.....+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 56655 8999999999999976 66555554 788876666555 45677899999986433321 1112235555555
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
.+++.+-.+ .+...++.++...+..|++ ..++|+||.++...
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 677765443 4666778888877777765 24578999887653
No 243
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.90 E-value=2.7 Score=46.90 Aligned_cols=149 Identities=15% Similarity=0.021 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCC-----CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhh
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-----TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSF 315 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p-----~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f 315 (563)
.+.|.+.+++..==.+++ +.|...+ +.+.+... -|++.+ -.|++++.||-|+|.. |...++. +.++.
T Consensus 10 a~~l~~~L~~~GV~~iFg--vpG~~~~~l~dal~~~~~~g~~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG 86 (569)
T PRK08327 10 AELFLELLKELGVDYIFI--NSGTDYPPIIEAKARARAAGRPLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVG 86 (569)
T ss_pred HHHHHHHHHHCCCCEEEE--cCCCCcHHHHHHHHhhhhcCCCCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHH
Confidence 466677776653222222 2233322 34433211 366766 7899999999999987 6444444 48888
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCC----C--CCCCC-hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh
Q 008493 316 MQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD----G--PTHCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA 386 (563)
Q Consensus 316 ~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~----G--~tH~~-~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~ 386 (563)
+..++.-+ ..+...+.||+++...... .+.. . ..+|. ..+..+++.+-.+ .+...++.++...+..|++
T Consensus 87 ~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~ 164 (569)
T PRK08327 87 TANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQ 164 (569)
T ss_pred HHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHH
Confidence 87776665 4567789999998754322 1111 0 12343 3444566654433 4677788888888888876
Q ss_pred ----cCCCCEEEEecCC
Q 008493 387 ----IDDRPSCFRYPRG 399 (563)
Q Consensus 387 ----~~~~P~~i~~~~~ 399 (563)
..++|++|.++..
T Consensus 165 ~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 165 IAMSEPKGPVYLTLPRE 181 (569)
T ss_pred HHhcCCCCCEEEECcHH
Confidence 2368999988754
No 244
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.87 E-value=0.67 Score=46.92 Aligned_cols=103 Identities=6% Similarity=-0.006 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhC------CCeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEEeCCCCC-CCCCCCCC----------
Q 008493 292 HAVTFAAGLACE------GLKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLV-GADGPTHC---------- 352 (563)
Q Consensus 292 ~~~~~a~G~a~~------G~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~-g~~G~tH~---------- 352 (563)
+.+++|.|++++ +-..++.++++ +..-.++.+ +.++..++||++++-+-... ...|..|.
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344556666554 33456655444 334445665 78899999999987432221 11111111
Q ss_pred ----------ChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 353 ----------GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 353 ----------~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+...+..-...+-+....|.++.++...+++|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1222333334556777999999999999999986 689988854
No 245
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.66 E-value=0.85 Score=51.05 Aligned_cols=117 Identities=11% Similarity=0.037 Sum_probs=77.6
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~ 358 (563)
-+++.+ ..|++++.||.|+|.. |.-.+|. +.++.+..++--+ ..+...+.||+++.............+|......
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 456666 6999999999999976 6443333 4677775555555 4667789999998744332111223456555556
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCCC
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 400 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~~ 400 (563)
+++.+-.+ .....++.++...++.|++. .++|++|.++...
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 77765543 34566777877777777652 3589999988663
No 246
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.65 E-value=2.8 Score=46.84 Aligned_cols=117 Identities=10% Similarity=-0.035 Sum_probs=79.6
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCC--CCCCCCCCChhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFD 356 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~--g~~G~tH~~~~d 356 (563)
-|++.+ -.|+++..||.|.+.. |...+|.+ .++.+..++.-+ ..|...+.||+++....... +..-.++|...+
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 456655 8999999999999987 65555554 788876666665 56678899999986432211 111123555555
Q ss_pred hhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 357 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 357 ~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
..+++.+-.+ .+...++.++...+.+|+. ..++|++|-++...
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 5667765443 4556778888888887776 24688999988653
No 247
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=92.60 E-value=1.7 Score=43.95 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecc-c--chHHHHHHHHHHhhCC-CeeEEeechhh-
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVG-I--AEQHAVTFAAGLACEG-LKPFCAIYSSF- 315 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~g-i--~E~~~~~~a~G~a~~G-~~~~~~~~~~f- 315 (563)
...++.++|.++.....+.+++ .|+|-+... + +|++++ + .=-.++.+|.|++++. -++++.+.++.
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4556666665554444455444 577754421 1 344432 1 1123445677877763 34555554433
Q ss_pred -HHHHHHHHHHHhccCCCCeEEEEe-CCCC--CC-CCCC----------CCCCh----hhh-hhhhcCCC--cEEEecCC
Q 008493 316 -MQRAYDQVVHDVDLQKLPVRFAMD-RAGL--VG-ADGP----------THCGS----FDV-TFMACLPN--MVVMAPSD 373 (563)
Q Consensus 316 -~~~a~dqi~~~a~~~~~pv~~v~~-~~G~--~g-~~G~----------tH~~~----~d~-~~~~~~p~--~~v~~P~~ 373 (563)
++-....+ ..+...++|++++.- ..++ ++ ...+ +..+. .+. .+...... +......+
T Consensus 99 ~f~mg~~eL-~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHF-IHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHH-HHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 33334444 456788999877763 3332 21 1111 00000 111 12222222 22336789
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEe
Q 008493 374 EAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 374 ~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+.|+..++++|+. .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999987 588988754
No 248
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=92.38 E-value=4.1 Score=39.96 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCCCeeecccchHHHHHHHHHHh----hC-----C-CeeEEeechhh--HHHHHHHHHHHhccCCCCeEEEEeCCCCCCC
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLA----CE-----G-LKPFCAIYSSF--MQRAYDQVVHDVDLQKLPVRFAMDRAGLVGA 346 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a----~~-----G-~~~~~~~~~~f--~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~ 346 (563)
+|.++++..+.-.+.+|.+..+| ++ - -++++.+.+++ +...+..+ ..+...++|++++.-+-+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l-~ta~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGAL-SHSLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHH-HHHHHcCCCeEEEEECCccccC
Confidence 34566666554456666544444 33 1 35677765554 32334444 3445578998887743332121
Q ss_pred CCCCCCC------------------hhhhh-hhhc--CCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 347 DGPTHCG------------------SFDVT-FMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 347 ~G~tH~~------------------~~d~~-~~~~--~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
-+.+++. ..|+. +.+. ++......+.++.|+...+++++.+.++|.+|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111110 01222 2222 3334444699999999999999863578988754
No 249
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.28 E-value=2.9 Score=39.21 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHH-HhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechh--hHHHH
Q 008493 243 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS--FMQRA 319 (563)
Q Consensus 243 ~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~-~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~--f~~~a 319 (563)
+++.++|.+.+. ..+++ .|.|.... ..+. ...|.+++..|--=. .++.|.|++++--++++.+.++ |++-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv--~d~G~~~~-~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVV--SNIGVPSK-ELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEE--ecCCHhHH-HHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 345556666663 33333 35553321 1122 235778876432222 2346777777645566666544 44332
Q ss_pred HHHHHHHhccCC-CCeEEEE-eCCCCCCCCCC--CCC-Chhhhh-hhhcCCCcEEEe-cCCHHHHHHHHHHHHhcCCCCE
Q 008493 320 YDQVVHDVDLQK-LPVRFAM-DRAGLVGADGP--THC-GSFDVT-FMACLPNMVVMA-PSDEAELFHMVATAAAIDDRPS 392 (563)
Q Consensus 320 ~dqi~~~a~~~~-~pv~~v~-~~~G~~g~~G~--tH~-~~~d~~-~~~~~p~~~v~~-P~~~~e~~~~l~~a~~~~~~P~ 392 (563)
..+ ..++..+ +|++++. ...++ |..+. +.. ...|.. +.+. -|+.... ..++.|+...++ +++ .++|.
T Consensus 76 -~el-~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a-~G~~~~~~v~~~~~l~~al~-a~~-~~~p~ 149 (181)
T TIGR03846 76 -GVL-PTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKA-AGIRNVEKVADEEELRDALK-ALA-MKGPT 149 (181)
T ss_pred -hHH-HHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHH-CCCCeEEEeCCHHHHHHHHH-HHc-CCCCE
Confidence 333 4456666 5887776 44443 21111 111 111222 2333 2455555 788999999997 765 67898
Q ss_pred EEEe
Q 008493 393 CFRY 396 (563)
Q Consensus 393 ~i~~ 396 (563)
+|..
T Consensus 150 li~v 153 (181)
T TIGR03846 150 FIHV 153 (181)
T ss_pred EEEE
Confidence 8755
No 250
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.13 E-value=1.6 Score=41.07 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=66.4
Q ss_pred hCCCCeeeccc-ch-HHHHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEEe-CCCCC-------
Q 008493 278 RFPTRCFDVGI-AE-QHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV------- 344 (563)
Q Consensus 278 ~~p~r~i~~gi-~E-~~~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~~------- 344 (563)
..|.+|+..+- .= -..++.|.|++++. -++++.+. +.|++...| + ..+...++|++++.. ..++.
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e-L-~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE-L-ATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH-H-HHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 45778886432 21 12556788888763 34555554 445544333 3 557788999877764 44321
Q ss_pred ---CC-CCCCC-CChhhhh-hhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 345 ---GA-DGPTH-CGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 345 ---g~-~G~tH-~~~~d~~-~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+. ....+ ....|.. +.+.+ |+......++.|+...++++++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00111 1112332 33333 5667777889999999999976 588988754
No 251
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.08 E-value=1.2 Score=44.75 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechhh--HH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSF--MQ 317 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~f--~~ 317 (563)
...++.+++.++.-..++.++ ..|.|.+.....+.. +.. +.+ + =-..+.+|.|++++. -++++.+.++. +.
T Consensus 19 i~~~~~~a~~~l~~~p~d~iv-vsdiG~~~~~~~~~~--~~~-~~~-~-mG~alp~AiGaklA~pd~~VVai~GDG~~~~ 92 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVI-VSGIGQAAKMPHYIN--VNG-FHT-L-HGRAIPAATAVKATNPELTVIAEGGDGDMYA 92 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEE-EeCchHhhhHHHHcc--CCC-CCc-c-cccHHHHHHHHHHHCCCCcEEEEECchHHhh
Confidence 456777777666333344444 447664332221110 111 111 1 122566788888775 46677765544 33
Q ss_pred HHHHHHHHHhccCCCCeEEEEe-CCCC--CC-CCCC-------C-------CCChhhhhhhhcCCCcEEE---ecCCHHH
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMD-RAGL--VG-ADGP-------T-------HCGSFDVTFMACLPNMVVM---APSDEAE 376 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~-~~G~--~g-~~G~-------t-------H~~~~d~~~~~~~p~~~v~---~P~~~~e 376 (563)
-.+..+ ..++..++|+++++- ..++ ++ ...+ + -....|+.-+..--|...+ .+.++.|
T Consensus 93 iG~~eL-~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 93 EGGNHL-IHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred CcHHHH-HHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 335555 577888999888773 3332 21 0000 0 0001122212211233344 4999999
Q ss_pred HHHHHHHHHhcCCCCEEEEe
Q 008493 377 LFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~ 396 (563)
+...+++|++ .++|.+|-.
T Consensus 172 l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 172 TKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 689988854
No 252
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=91.99 E-value=0.72 Score=44.16 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred hCCCCeeecccchHHHHH----HHHHHhhCC-CeeEEeech--hhHHHHHHHHHHHhccCCCCeEEEE-eCCCCC--C--
Q 008493 278 RFPTRCFDVGIAEQHAVT----FAAGLACEG-LKPFCAIYS--SFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV--G-- 345 (563)
Q Consensus 278 ~~p~r~i~~gi~E~~~~~----~a~G~a~~G-~~~~~~~~~--~f~~~a~dqi~~~a~~~~~pv~~v~-~~~G~~--g-- 345 (563)
+.|.+++..+ -.+.+| .|.|++++. -++++.+.+ .|++.. ..+ ..+...++|++++. ...++. .
T Consensus 36 ~~~~~~~~~~--~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~-~eL-~Ta~~~~lpv~ivV~NN~~~g~~~~~ 111 (205)
T cd02003 36 RTPGGYHLEY--GYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH-SEI-VTAVQEGLKIIIVLFDNHGFGCINNL 111 (205)
T ss_pred CCCCcEEcCC--CcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH-HHH-HHHHHcCCCCEEEEEECCccHHHHHH
Confidence 4578888642 234444 566766653 355666544 455422 222 45677899977666 444431 0
Q ss_pred --CCCCC-----CC-------------ChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 346 --ADGPT-----HC-------------GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 346 --~~G~t-----H~-------------~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
..+.. +. ...|..-+..--|+..+...++.|+...++++++ .++|++|-.
T Consensus 112 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 112 QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00000 00 0122222222236777778999999999999976 588988754
No 253
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=91.93 E-value=3.2 Score=41.70 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhC-CCCee-ecccchHHHHHHHHHHhhC-CCeeEEeechh--hHHHH
Q 008493 245 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF-PTRCF-DVGIAEQHAVTFAAGLACE-GLKPFCAIYSS--FMQRA 319 (563)
Q Consensus 245 ~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~-p~r~i-~~gi~E~~~~~~a~G~a~~-G~~~~~~~~~~--f~~~a 319 (563)
+.++|.++.-..++.+++ .|+|-+.. +...+ ++++. -.| .++.+|.|++++ --++++.+.++ |++ .
T Consensus 31 v~~al~e~~~~~~d~ivv-sdiGc~~~---~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~GDG~f~~-~ 101 (277)
T PRK09628 31 IIRAIDKLGWNMDDVCVV-SGIGCSGR---FSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSGDGDGLA-I 101 (277)
T ss_pred HHHHHHHhcCCCCCEEEE-eCcCHHHH---hhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEECchHHHH-h
Confidence 446666654333455444 57774321 11112 23333 222 567788888886 23455555433 443 2
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC------------------ChhhhhhhhcCCCcEE---EecCCHHHHH
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC------------------GSFDVTFMACLPNMVV---MAPSDEAELF 378 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~------------------~~~d~~~~~~~p~~~v---~~P~~~~e~~ 378 (563)
-.+-...++..++|++++.-.-+..|.-+.+.+ ...|+.-+..--|+.- ....++.|+.
T Consensus 102 g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~ 181 (277)
T PRK09628 102 GGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLE 181 (277)
T ss_pred hHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHH
Confidence 223334578889998888743322221110000 0112121111124433 5789999999
Q ss_pred HHHHHHHhcCCCCEEEEe
Q 008493 379 HMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 379 ~~l~~a~~~~~~P~~i~~ 396 (563)
.++++|+. .++|++|-.
T Consensus 182 ~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 182 KLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHh-CCCCEEEEE
Confidence 99999987 689988855
No 254
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=91.87 E-value=2.6 Score=39.35 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcC-hHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechh--hHHHHH
Q 008493 244 YFAEALIAEAEVDKDVVAIHAAMGGGTG-LNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS--FMQRAY 320 (563)
Q Consensus 244 a~~~~l~~~~~~~~~v~~~~~D~~~s~~-~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~--f~~~a~ 320 (563)
++.+.|.+.+. ..+++ .|.+.... +..+ ...|.+++..|.-= ..++.|.|++++..++++.+.++ |++. .
T Consensus 3 ~~~~~l~~~~~--~~~vv--~d~G~~~~~~~~~-~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~-~ 75 (179)
T cd03372 3 DAIKTLIADLK--DELVV--SNIGFPSKELYAA-GDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMN-L 75 (179)
T ss_pred HHHHHHHHhCC--CCeEE--eCCCHhHHHHHHc-cCcccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhC-H
Confidence 34455555555 23333 36554321 1111 23466776422211 22346777777644677777555 4322 2
Q ss_pred HHHHHHhccCC-CCeEEEE-eCCCCCCCCCCCCCC---hhhh-hhhhcCCCcEEEecC-CHHHHHHHHHHHHhcCCCCEE
Q 008493 321 DQVVHDVDLQK-LPVRFAM-DRAGLVGADGPTHCG---SFDV-TFMACLPNMVVMAPS-DEAELFHMVATAAAIDDRPSC 393 (563)
Q Consensus 321 dqi~~~a~~~~-~pv~~v~-~~~G~~g~~G~tH~~---~~d~-~~~~~~p~~~v~~P~-~~~e~~~~l~~a~~~~~~P~~ 393 (563)
..+ ..+...+ .|++++. ...++ +..+.++.. ..|. .+.+. -|+...... +++|+...+++++ ++|.+
T Consensus 76 ~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~~~~~d~~~lA~a-~G~~~~~v~~~~~el~~al~~a~---~gp~l 149 (179)
T cd03372 76 GAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHAGKKTDLEAVAKA-CGLDNVATVASEEAFEKAVEQAL---DGPSF 149 (179)
T ss_pred HHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCCCCCCCHHHHHHH-cCCCeEEecCCHHHHHHHHHHhc---CCCEE
Confidence 233 3445555 4555554 44443 211211111 1122 22233 255555666 9999999999996 68988
Q ss_pred EEe
Q 008493 394 FRY 396 (563)
Q Consensus 394 i~~ 396 (563)
|-.
T Consensus 150 Iev 152 (179)
T cd03372 150 IHV 152 (179)
T ss_pred EEE
Confidence 754
No 255
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=91.75 E-value=0.82 Score=43.44 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=67.0
Q ss_pred hCCCCeeecc-cch-HHHHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEE-eCCCCC--C----
Q 008493 278 RFPTRCFDVG-IAE-QHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV--G---- 345 (563)
Q Consensus 278 ~~p~r~i~~g-i~E-~~~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~-~~~G~~--g---- 345 (563)
..|.+|+..+ ..= -..+..|+|++++. -++++.+. +.|++.. ..+ ..+...++|++++. ...++. .
T Consensus 41 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~-~eL-~Ta~~~~lpvi~vV~NN~~yg~~~~~q~ 118 (196)
T cd02013 41 EKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSM-MEI-MTAVRHKLPVTAVVFRNRQWGAEKKNQV 118 (196)
T ss_pred CCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccH-HHH-HHHHHhCCCeEEEEEECchhHHHHHHHH
Confidence 4578888542 111 22556788888763 45566664 4455443 333 34677789988777 445531 0
Q ss_pred -CCCC----CCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh--cCCCCEEEEe
Q 008493 346 -ADGP----THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRY 396 (563)
Q Consensus 346 -~~G~----tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~--~~~~P~~i~~ 396 (563)
..+. +-....|+.-+..--|+.-..-.++.|+...+++++. +.++|++|-.
T Consensus 119 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 119 DFYNNRFVGTELESESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHcCCCcccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 0010 0001122222222236677788899999999999976 2478988754
No 256
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=90.95 E-value=6.2 Score=37.34 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=55.0
Q ss_pred HHHHHHhhC-CCeeEEeechhh--HHHHHHHHHHHhccCCCCeEEEE-eCCCCCCCCCCCCC--------------C---
Q 008493 295 TFAAGLACE-GLKPFCAIYSSF--MQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHC--------------G--- 353 (563)
Q Consensus 295 ~~a~G~a~~-G~~~~~~~~~~f--~~~a~dqi~~~a~~~~~pv~~v~-~~~G~~g~~G~tH~--------------~--- 353 (563)
..|.|++++ .-|+++.+.++. .+.....+ ..+...++|++++. ...++ +..+.+++ .
T Consensus 58 paAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (193)
T cd03375 58 AVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGNIE 135 (193)
T ss_pred HHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCCCC
Confidence 367777776 345666664443 22333333 45677799988776 44443 21111000 0
Q ss_pred -hhhhh-hhhcC--CCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 354 -SFDVT-FMACL--PNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 354 -~~d~~-~~~~~--p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
..|+. +...+ +......+.++.|+...+++|++ .++|++|-.
T Consensus 136 ~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 136 EPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01211 22222 22222478999999999999986 688988754
No 257
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=90.46 E-value=1.1 Score=42.84 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=67.4
Q ss_pred HhCCCCeeeccc-chHH-HHHHHHHHhhCC-CeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEEe-CCCCCCCC---
Q 008493 277 RRFPTRCFDVGI-AEQH-AVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVGAD--- 347 (563)
Q Consensus 277 ~~~p~r~i~~gi-~E~~-~~~~a~G~a~~G-~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~~g~~--- 347 (563)
-..|.++++.+- .=.+ .++.|+|++++. -++++.+.++ |++.+.| | ..+...++|++++.. ..++ +..
T Consensus 44 ~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpviivV~NN~~y-g~~~~~ 120 (202)
T cd02006 44 VYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE-L-AVGAQHRIPYIHVLVNNAYL-GLIRQA 120 (202)
T ss_pred cCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH-H-HHHHHhCCCeEEEEEeCchH-HHHHHH
Confidence 345778887542 2122 445788887763 4566666544 5444322 2 457788999887774 3443 100
Q ss_pred -----C-----CCCCC---------hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 348 -----G-----PTHCG---------SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 348 -----G-----~tH~~---------~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
+ ..+.. ..|..-+..--|+.-+...++.|+...+++++. ..++|++|-.
T Consensus 121 q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 121 QRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 0 00110 112222222236777888999999999999985 2578988754
No 258
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=89.97 E-value=1.5 Score=40.75 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=63.3
Q ss_pred hCCCCeeecccchH-HHHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEEeC-CCCC--C-----
Q 008493 278 RFPTRCFDVGIAEQ-HAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDR-AGLV--G----- 345 (563)
Q Consensus 278 ~~p~r~i~~gi~E~-~~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~~~-~G~~--g----- 345 (563)
..|.+++..+-.=. ..+..|+|++++- -++++.+. +.|++-. ..+ ..+...++|++++... .++. .
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~el-~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QAL-WTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HHH-HHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 35778876532111 1345677777763 34455554 4454332 333 4566779998887643 3321 0
Q ss_pred --CC--------CC-CCCChhhhh-hhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 346 --AD--------GP-THCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 346 --~~--------G~-tH~~~~d~~-~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
.. +. ......|+. +... -|+..+...++.|+...++++++ .++|.+|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKA-FGVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHH-cCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 000112222 2233 25667777889999999999976 578988743
No 259
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=89.83 E-value=11 Score=35.60 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechh--hHHHHHHHHHHHhccCCC-CeEEEE-eCCCCCCCCC--CCC
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKL-PVRFAM-DRAGLVGADG--PTH 351 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~--f~~~a~dqi~~~a~~~~~-pv~~v~-~~~G~~g~~G--~tH 351 (563)
+|.+|+..|-.=. .++.|+|++++. -++++.+.++ |++- ...+ ..++..++ |++++. ...++ +..+ .+.
T Consensus 40 ~~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~eL-~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSMGH-ASQIALGIALARPDRKVVCIDGDGAALMH-MGGL-ATIGGLAPANLIHIVLNNGAH-DSVGGQPTV 115 (188)
T ss_pred ccCceeecCcccc-HHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccHH-HHHHHcCCCCcEEEEEeCchh-hccCCcCCC
Confidence 3478886532222 346677777663 3556665444 4432 2333 44555665 555444 44443 2111 111
Q ss_pred CChhhhh-hhhcCCCcEE-EecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 352 CGSFDVT-FMACLPNMVV-MAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 352 ~~~~d~~-~~~~~p~~~v-~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
....|.. +... -|+.- ....++.|+...++++++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a-~G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKA-CGYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHH-cCCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112222 2333 24543 466799999999999976 578988755
No 260
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=89.53 E-value=1.6 Score=39.96 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCC------------CCCChhhh
Q 008493 293 AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP------------THCGSFDV 357 (563)
Q Consensus 293 ~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~------------tH~~~~d~ 357 (563)
.++.|.|++++. -++++.+. +.|++ .++.+ ..+...++|++++...-+..+..+. ......|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 345677777764 24444444 33443 44555 5677789998887744332111000 11112222
Q ss_pred -hhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 358 -TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 358 -~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
.+... -|+......++.|+...++++++ .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 23333 36777788889999999999974 688988754
No 261
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=88.98 E-value=2.4 Score=43.94 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCC-Ce-eEEeechhhH--H-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC-CChhh----hhhhh
Q 008493 292 HAVTFAAGLACEG-LK-PFCAIYSSFM--Q-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-CGSFD----VTFMA 361 (563)
Q Consensus 292 ~~~~~a~G~a~~G-~~-~~~~~~~~f~--~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH-~~~~d----~~~~~ 361 (563)
.++|+|.++-+.| .. ..+++|++.. + --+|.+ |.++.+++||++++-+-+. +..-+.. |...+ =+..-
T Consensus 144 ~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~v~klPvvf~ieNN~y-AiSvp~~~q~~~~~~~~ra~ay 221 (358)
T COG1071 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAAVWKLPVVFVIENNQY-AISVPRSRQTAAEIIAARAAAY 221 (358)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHHHhcCCEEEEEecCCc-eeecchhhcccchhHHhhhhcc
Confidence 3455555555566 33 4444576664 2 234444 9999999999999966553 1111222 22222 12334
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
.||+++| .=.|+..++..+++|.+ ...+|++|..
T Consensus 222 gipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 222 GIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred CCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 7899988 89999999999998876 3568988854
No 262
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=88.46 E-value=3.5 Score=39.10 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHhhC----C-CeeEEeechhhH-H--HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCC
Q 008493 294 VTFAAGLACE----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPN 365 (563)
Q Consensus 294 ~~~a~G~a~~----G-~~~~~~~~~~f~-~--~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~ 365 (563)
+++|+|+|++ | -+.++++.++.- + ..+|.+ +.++....|++++....+. +.++++. ... ..++. -+
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~--~~~~a-~G 154 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPG--NLFEE-LG 154 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHH--HHHHh-cC
Confidence 4556666654 3 244555554442 2 445666 6677779999998877664 2233333 222 23343 34
Q ss_pred cEE---EecCCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 366 MVV---MAPSDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 366 ~~v---~~P~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+.+ +...|..++...++++.+ .++|++|...
T Consensus 155 ~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 155 FRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred CCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 433 567788999999988855 5789888653
No 263
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=88.42 E-value=3.8 Score=38.40 Aligned_cols=115 Identities=15% Similarity=0.056 Sum_probs=63.3
Q ss_pred hCCCCeeecccchHH----HHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEEe-CCCCC---C-
Q 008493 278 RFPTRCFDVGIAEQH----AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLV---G- 345 (563)
Q Consensus 278 ~~p~r~i~~gi~E~~----~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~~---g- 345 (563)
..|.+++..+ -.+ .++.|.|++++- -++++.+. +.|++-..| + ..+...++|++++.. ..++. .
T Consensus 38 ~~~~~~~~~~--~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l-~ta~~~~~p~~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 38 PKGTRFISQP--LWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-L-STMIRYGLNPIIFLINNDGYTIERAI 113 (183)
T ss_pred CCCCEEEecc--chhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-H-HHHHHhCCCCEEEEEECCCcEEEEEe
Confidence 3356777642 222 345577777653 34555554 445543333 3 346666788776663 34421 0
Q ss_pred -CCCCCCCC--hhhhh-hhhcCC---CcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 346 -ADGPTHCG--SFDVT-FMACLP---NMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 346 -~~G~tH~~--~~d~~-~~~~~p---~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
..+..+.. ..|.. +...+- ++......++.|+...++++++..++|++|-.
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 01111111 12222 223322 36778889999999999999863478988755
No 264
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=88.27 E-value=3.4 Score=37.60 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHH-hhcccCCCEEEEEeCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMN-NAGYLDSDMIVILNDNK 88 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~-~a~~~~~pli~iv~nN~ 88 (563)
++.|.|+|+. + .+++++.. ..+. ...++.+. .++.+++|++++....+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCc
Confidence 5667777763 2 34455554 4443 26677777 88888999999998655
No 265
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=87.94 E-value=6.7 Score=39.81 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhC----CC-eeEEeech--hhHHHHHHHHHHHhccCCCCeEEEEeCCCCCC-CCCCCCC-----------
Q 008493 292 HAVTFAAGLACE----GL-KPFCAIYS--SFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHC----------- 352 (563)
Q Consensus 292 ~~~~~a~G~a~~----G~-~~~~~~~~--~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g-~~G~tH~----------- 352 (563)
+++++|.|++.+ +. ++++.+.+ .+..-.+..+ ..+...+.++++++-+-+..+ ..|..+.
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L-~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSL-SGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHH-HHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 455667776654 42 34555543 3445556665 567778888887764333211 1111111
Q ss_pred --------------ChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 353 --------------GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 353 --------------~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+...+..-...+-+....|.++.|+...+++|++ .++|.+|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1222222244555777899999999999999976 689988864
No 266
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=87.74 E-value=4.7 Score=39.97 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHHHHHhhC------CCeeEEee-chhhHH-HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC--Chhhh-hhhh
Q 008493 294 VTFAAGLACE------GLKPFCAI-YSSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDV-TFMA 361 (563)
Q Consensus 294 ~~~a~G~a~~------G~~~~~~~-~~~f~~-~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~--~~~d~-~~~~ 361 (563)
++.|+|+|++ ..++++-+ -+.|.. ..++.+ +.++..++| ++++....++ +..+.++. ...++ .+++
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~~ 188 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKFE 188 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHHH
Confidence 3556666664 34544444 233432 356666 678888987 6666665554 33333322 22232 2444
Q ss_pred cCCCcEEEecC--CHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 362 CLPNMVVMAPS--DEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 362 ~~p~~~v~~P~--~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
. -|+.++.-. |..++...++++.+..++|++|...
T Consensus 189 a-~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 189 A-FGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred H-cCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4 378887777 9999999999986543789887654
No 267
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=87.61 E-value=6.6 Score=36.54 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=52.5
Q ss_pred HHHHHHhhCC-CeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEEe-CCCCCCCCCCC-----------CCChhhhh-
Q 008493 295 TFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVGADGPT-----------HCGSFDVT- 358 (563)
Q Consensus 295 ~~a~G~a~~G-~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~~g~~G~t-----------H~~~~d~~- 358 (563)
+.|+|++++. -++++.+.++ |++..+..+ ..+...++|++++.. ..++ +..+.+ .....|+.
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHH
Confidence 3567777663 4556666544 443334444 457778999877764 3332 211111 00111221
Q ss_pred hhhc--CCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 359 FMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 359 ~~~~--~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
+.+. .....|..|.+..++...++++++ .++|.+|..
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 233445555566665688888876 578988754
No 268
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=87.52 E-value=8.2 Score=42.81 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHH
Q 008493 246 AEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a 319 (563)
.++|.+.+++..==.+++ +.|...+ +.+.+ .+ =|++.+ ..|++++.||-|.|.. | +.+|. +.++.+..+
T Consensus 4 ~~~l~~~L~~~Gv~~vFG--~pG~~~~~l~dal~~-~~~i~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~ 78 (539)
T TIGR03393 4 GDYLLDRLTDIGIDHLFG--VPGDYNLQFLDHVID-SPDICWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSA 78 (539)
T ss_pred HHHHHHHHHHcCCCEEEE--CCCCchHHHHHHHhh-CCCCcEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHH
Confidence 456666666543222332 2333322 33322 22 355555 8999999999999986 7 56655 578887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCCC--CCCCCCCCC-----hhh-hhhhhcCCCcE-EEecCC-HHHHHHHHHHHHhcCC
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCG-----SFD-VTFMACLPNMV-VMAPSD-EAELFHMVATAAAIDD 389 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~~--g~~G~tH~~-----~~d-~~~~~~~p~~~-v~~P~~-~~e~~~~l~~a~~~~~ 389 (563)
+--+ -.+-..+.||+++....... +..-..|+. ..+ ..+++.+-.+. ++.|.+ +..+..+++.|+. .+
T Consensus 79 ~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~ 156 (539)
T TIGR03393 79 INGI-AGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALR-ER 156 (539)
T ss_pred hhHH-HHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cC
Confidence 5555 35667899999987433211 111111111 001 12333322221 225666 7888888888876 56
Q ss_pred CCEEEEecCCC
Q 008493 390 RPSCFRYPRGN 400 (563)
Q Consensus 390 ~P~~i~~~~~~ 400 (563)
+|++|-++...
T Consensus 157 gPv~l~iP~Dv 167 (539)
T TIGR03393 157 RPGYLMLPVDV 167 (539)
T ss_pred CCEEEEecccc
Confidence 89999998764
No 269
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=86.30 E-value=8.2 Score=35.24 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhc-ccCCCEEEEEeCCC
Q 008493 30 STSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNK 88 (563)
Q Consensus 30 G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~-~~~~pli~iv~nN~ 88 (563)
+.+.++|.|.+++ .++.++|+.+=|- |...-++..|. ..+.|+++|+-+-+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 5566777777654 2567888888883 34556788888 77899999997665
No 270
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=85.68 E-value=4.6 Score=41.08 Aligned_cols=102 Identities=11% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCC-CeeEEeechh--hHHHHHHHHHHHhccCCCCeEEEEe-CCCC--CCC-CCCCC----------C---
Q 008493 293 AVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMD-RAGL--VGA-DGPTH----------C--- 352 (563)
Q Consensus 293 ~~~~a~G~a~~G-~~~~~~~~~~--f~~~a~dqi~~~a~~~~~pv~~v~~-~~G~--~g~-~G~tH----------~--- 352 (563)
++.+|.|++++. -++++.+.++ |+......+ ..++..++|+++++- ..++ ++. ..++. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL-~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHF-IHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHH-HHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 455788888773 4555665444 333444455 457788999887774 3332 221 00010 0
Q ss_pred -ChhhhhhhhcCCCcEEE---ecCCHHHHHHHHHHHHhcCCCCEEEEe
Q 008493 353 -GSFDVTFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 353 -~~~d~~~~~~~p~~~v~---~P~~~~e~~~~l~~a~~~~~~P~~i~~ 396 (563)
...|+.-+..--|...+ ...++.|+..++++|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11122222222344443 78999999999999986 688988754
No 271
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=85.23 E-value=11 Score=37.57 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=43.7
Q ss_pred cCCCCCchhhHHHHHHHHhhhhc---CC--C--CcEEEEEcccc--cccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLK---GR--K--NNVVAVIGDGA--MTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~---~~--~--~~vv~~~GDG~--~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+..+.-|+.++.++-.|+..-.. +. . .+++.++.||. +.+|..-..+.-|...+..++||+.+|.
T Consensus 132 ~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 132 FTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 34455566666666655542110 11 1 28999999999 8888876767777777888888887774
No 272
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=85.14 E-value=12 Score=47.34 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcC-CCEEEEecCCCCCcC--h-HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEE-eechhhH
Q 008493 244 YFAEALIAEAEVD-KDVVAIHAAMGGGTG--L-NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFM 316 (563)
Q Consensus 244 a~~~~l~~~~~~~-~~v~~~~~D~~~s~~--~-~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~-~~~~~f~ 316 (563)
...+.|.+.+++. -+-++.. .|+.. + ..+. +.+ -|++. ...|+++.-||.|+|.. |.-.+| .|.++.+
T Consensus 302 ~~a~~lv~~L~~~GV~~vFg~---PG~~~~pL~dAl~-~~~~i~~i~-~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~ 376 (1655)
T PLN02980 302 VWASLIIEECTRLGLTYFCVA---PGSRSSPLAIAAS-NHPLTTCIA-CFDERSLAFHALGYARGSLKPAVVITSSGTAV 376 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEe---CCCCCHHHHHHHH-hCCCCeEEe-ccCcchHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 3456666666554 3444432 23332 2 3332 233 35554 48999999999999987 544443 3478877
Q ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEE--ecCCH-------HHHHHHHHHHHhc
Q 008493 317 QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM--APSDE-------AELFHMVATAAAI 387 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~--~P~~~-------~e~~~~l~~a~~~ 387 (563)
..++-.+ ..|...+.|++++.........+-..+|...+..+++.+-.+..- .|.+. ..+...+..|...
T Consensus 377 tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~ 455 (1655)
T PLN02980 377 SNLLPAV-VEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSS 455 (1655)
T ss_pred HHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCC
Confidence 6666665 467788999999875433211111236666666777876665443 34441 2334444444333
Q ss_pred CCCCEEEEecC
Q 008493 388 DDRPSCFRYPR 398 (563)
Q Consensus 388 ~~~P~~i~~~~ 398 (563)
.++||+|-++.
T Consensus 456 rpGPVhL~iP~ 466 (1655)
T PLN02980 456 PCGPVHINCPF 466 (1655)
T ss_pred CCCCEEEECcc
Confidence 46899998884
No 273
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=84.48 E-value=4.5 Score=36.26 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEE-E-cccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAV-I-GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~-~-GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+..+|.|++.+- . +.+|+ . |-|..+ ..+++..|...+.|+++++.+.+
T Consensus 47 a~~~A~G~a~~~-----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 47 AAGAAAGYARAG-----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHHhh-----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 456677776652 2 44444 4 777653 45778888888899999997665
No 274
>PRK06154 hypothetical protein; Provisional
Probab=83.61 E-value=11 Score=42.13 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=73.8
Q ss_pred CCeeecccchHHHHHHHHHHhhC-C--CeeEE-eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCC-CCCCCCCChh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-G--LKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGSF 355 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G--~~~~~-~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g-~~G~tH~~~~ 355 (563)
=|++.+ ..|++++.||.|+|.. | .-.++ .++++.+..+.--+ ..+...+.||+++........ ..++.+ .
T Consensus 55 i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~~---d 129 (565)
T PRK06154 55 IRPVIA-RTERVAVHMADGYARATSGERVGVFAVQYGPGAENAFGGV-AQAYGDSVPVLFLPTGYPRGSTDVAPNF---E 129 (565)
T ss_pred CeEEee-CcHHHHHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccccCCCCc---c
Confidence 456654 8999999999999975 3 33343 34788876666555 456778999999863322111 111112 2
Q ss_pred hhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 356 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 356 d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
...+++.+-.+ .....++.++...+..|++ ..++|++|.++...
T Consensus 130 ~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 130 SLRNYRHITKW-CEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred hhhhHhhccee-EEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchHH
Confidence 23455655443 4667788888888887775 24689999988763
No 275
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=82.16 E-value=4.8 Score=41.01 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=59.4
Q ss_pred HHHHHHHhh----CCCeeEEe-echhhH---HHHHHHHHHHhccCCCCeEEEEeCCC--CC-C-CCCCCCCChhhhhhhh
Q 008493 294 VTFAAGLAC----EGLKPFCA-IYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAG--LV-G-ADGPTHCGSFDVTFMA 361 (563)
Q Consensus 294 ~~~a~G~a~----~G~~~~~~-~~~~f~---~~a~dqi~~~a~~~~~pv~~v~~~~G--~~-g-~~G~tH~~~~d~~~~~ 361 (563)
+..|+|.|+ .|.+.++- ++++.. -..+|.+ |.++..++||++++.+-+ ++ . .....-....+.+-.-
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~ 185 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGY 185 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhccCCeEEEEecCCcccccCccccccccchhhhhhcc
Confidence 455556665 35444433 455553 2345555 999999999999986544 21 1 1111111233333334
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
.+|+++ +.=.|+.++...++.|++ ..++|++|-.
T Consensus 186 gip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 186 GIPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp TSEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CCcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 566654 588999999999998876 4578998855
No 276
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=81.56 E-value=11 Score=34.91 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=25.4
Q ss_pred hhhc-CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEE
Q 008493 161 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 199 (563)
Q Consensus 161 ~~~~-G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~ 199 (563)
++.+ |+.++.+ .|..+....++.+.+ .++|+++.
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 4444 6666555 899999999999887 57898864
No 277
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=80.54 E-value=12 Score=42.01 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred ecccchHHHHHHHHHHhhC----CC-eeEEeechhh--HH-HHHHHHHHHhccCCCCeEEEEeCCCCC--CCCCCC--CC
Q 008493 285 DVGIAEQHAVTFAAGLACE----GL-KPFCAIYSSF--MQ-RAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPT--HC 352 (563)
Q Consensus 285 ~~gi~E~~~~~~a~G~a~~----G~-~~~~~~~~~f--~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~--g~~G~t--H~ 352 (563)
..|+.= +.+++|+|+|++ |. ..+++.+++. .. .++|.+ |.++.+++|++++..+-++. +.-+.. |.
T Consensus 111 ~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l 188 (581)
T PRK12315 111 TVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMSIAENHGGLYKNL 188 (581)
T ss_pred CCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCcCCCCCchhhhhh
Confidence 444422 466778887775 32 3344455554 32 578887 88999899999998766542 111111 11
Q ss_pred C------hhh-hhhhhc--CCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 353 G------SFD-VTFMAC--LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 353 ~------~~d-~~~~~~--~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
. ..+ ..++.. ++.+.++...|..++...++++. ..++|++|...
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~-~~~gP~~i~~~ 241 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK-DIDHPIVLHIH 241 (581)
T ss_pred hhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH-hCCCCEEEEEE
Confidence 0 001 123444 33344446677788888888774 35789888653
No 278
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=80.51 E-value=6.6 Score=42.17 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=87.9
Q ss_pred HHHHHHHHHhc-C-CCEEEEecCCCCCcChHHH--HHhCCCCeeecc-cchHHHHHHHHHHhhC-CCeeEEeechhhHHH
Q 008493 245 FAEALIAEAEV-D-KDVVAIHAAMGGGTGLNLF--LRRFPTRCFDVG-IAEQHAVTFAAGLACE-GLKPFCAIYSSFMQR 318 (563)
Q Consensus 245 ~~~~l~~~~~~-~-~~v~~~~~D~~~s~~~~~~--~~~~p~r~i~~g-i~E~~~~~~a~G~a~~-G~~~~~~~~~~f~~~ 318 (563)
+++.|.+.+.+ + ..++.+-.| +++..| ..+.|+ +-..| -+|.++.-.|=|+|.. |.-.++.||+..-.-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGD----FNL~LLD~l~~~~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGD----FNLSLLDKLYAVPG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCc----ccHHHHHHhhhcCC-ceeecccchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 45555555544 2 345554444 555433 334454 33333 5799999999999975 888888889888766
Q ss_pred HHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCC--ChhhhhhhhcC-CC--cEEEecCCHHHHHHHHHHHHh---cC
Q 008493 319 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC--GSFDVTFMACL-PN--MVVMAPSDEAELFHMVATAAA---ID 388 (563)
Q Consensus 319 a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~--~~~d~~~~~~~-p~--~~v~~P~~~~e~~~~l~~a~~---~~ 388 (563)
|++-|- -+--.++||+.+...+.. .+..-.-|+ +..|...+..+ -+ +.+..--|.+++...+..|++ ..
T Consensus 81 AlNGIA-GsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~ 159 (561)
T KOG1184|consen 81 ALNGIA-GAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKE 159 (561)
T ss_pred hhcccc-hhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHh
Confidence 754441 112358999998744432 122223344 23333332222 22 334555677777777776665 46
Q ss_pred CCCEEEEecCCC
Q 008493 389 DRPSCFRYPRGN 400 (563)
Q Consensus 389 ~~P~~i~~~~~~ 400 (563)
.+|+||-+|-+.
T Consensus 160 ~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 160 SKPVYIGVPANL 171 (561)
T ss_pred cCCeEEEeeccc
Confidence 899999987663
No 279
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=79.88 E-value=6.6 Score=40.78 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCC-CeeEEeechh--hHHH-HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC--Chhhhh-hhh--c
Q 008493 292 HAVTFAAGLACEG-LKPFCAIYSS--FMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVT-FMA--C 362 (563)
Q Consensus 292 ~~~~~a~G~a~~G-~~~~~~~~~~--f~~~-a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~--~~~d~~-~~~--~ 362 (563)
.++|+|.|..+.+ -++++.++++ |.+- .++.+ +.++..++||++++.+-++ +...+++. ...++. ... .
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL-~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEAL-NFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHH-HHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCC
Confidence 3444444444444 3556666655 4322 34555 8899999999999866553 11112111 122222 112 2
Q ss_pred CCCcEEEecCCHHHHHH----HHHHHHhcCCCCEEEEe
Q 008493 363 LPNMVVMAPSDEAELFH----MVATAAAIDDRPSCFRY 396 (563)
Q Consensus 363 ~p~~~v~~P~~~~e~~~----~l~~a~~~~~~P~~i~~ 396 (563)
+|+..| .-.|..++.. .++.+. ..++|++|-.
T Consensus 208 ~~~~~V-dg~d~~av~~a~~~A~~~a~-~~~gP~lIev 243 (341)
T TIGR03181 208 IPGVQV-DGNDVLAVYAVTKEAVERAR-SGGGPTLIEA 243 (341)
T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHHH-cCCCCEEEEE
Confidence 444433 3444444344 444443 3578998855
No 280
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=79.61 E-value=3.4 Score=37.28 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCCCeeec--ccchHHHHHHHHHHhhCC-CeeEEeec--hhhHHHHHHHHHHHhccCCCCeEEEE-eCCCC--CC----C
Q 008493 279 FPTRCFDV--GIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG----A 346 (563)
Q Consensus 279 ~p~r~i~~--gi~E~~~~~~a~G~a~~G-~~~~~~~~--~~f~~~a~dqi~~~a~~~~~pv~~v~-~~~G~--~g----~ 346 (563)
.|.+++.. --+=-..+++|.|++++. -++++.+. +.|++- ...| ..+...++|++++. ...++ .+ .
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el-~ta~~~~~~v~~vv~nN~~~~~~~~~~~~ 94 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQEL-ATAVRYGLPVVIVVLNNGGYGMTGGQQTP 94 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGH-HHHHHTTSSEEEEEEESSBSHHHHHHHHH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchh-HHHhhccceEEEEEEeCCcceEecccccc
Confidence 36777762 223344567788888873 34555553 445543 3333 45677788977776 44443 10 0
Q ss_pred CCC-C----C---CChhhh-hhhhcCCCcEEEecCC--HHHHHHHHHHHHhcCCCCEEEE
Q 008493 347 DGP-T----H---CGSFDV-TFMACLPNMVVMAPSD--EAELFHMVATAAAIDDRPSCFR 395 (563)
Q Consensus 347 ~G~-t----H---~~~~d~-~~~~~~p~~~v~~P~~--~~e~~~~l~~a~~~~~~P~~i~ 395 (563)
.+. + . ....|+ .+.+. -|+..+.-.+ ++|+...++++++ .++|++|-
T Consensus 95 ~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 95 FGGGRFSGVDGKTFPNPDFAALAEA-FGIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp TTSTCHHSTBTTTSTTCGHHHHHHH-TTSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred CcCcccccccccccccCCHHHHHHH-cCCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 111 0 0 112222 23333 3666655444 4999999999985 68998874
No 281
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=79.29 E-value=12 Score=42.01 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=60.7
Q ss_pred HHHHHHHHhhC-----C-CeeEEeechhhH-H--HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC-----CChhhh-
Q 008493 293 AVTFAAGLACE-----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDV- 357 (563)
Q Consensus 293 ~~~~a~G~a~~-----G-~~~~~~~~~~f~-~--~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH-----~~~~d~- 357 (563)
.+++|.|+|++ + .++++++.++.- + ..++.+ +.++..+.|++++....++ +-++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 34566776654 1 345666655543 2 556776 6777777999988877664 2223321 111111
Q ss_pred hhhhcCCCcEEEe---cCCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 358 TFMACLPNMVVMA---PSDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 358 ~~~~~~p~~~v~~---P~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
..++.+ ||.++. -.|..+....++++.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 234443 666554 4889999999988855 5789887653
No 282
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=78.63 E-value=48 Score=35.66 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=77.8
Q ss_pred HHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEee-chhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC
Q 008493 275 FLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC 352 (563)
Q Consensus 275 ~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~-~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~ 352 (563)
-.++..=|||.+ -+||+++-.|-.+++- |...++.. .++.+..++--+. ++-...-|+++++..+...-..-.--|
T Consensus 46 aaqalGIk~I~~-RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~-NA~~n~wPll~IgGsa~~~~~~rGafQ 123 (571)
T KOG1185|consen 46 AAQALGIKFIGT-RNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVA-NAQMNCWPLLLIGGSASTLLENRGAFQ 123 (571)
T ss_pred HHHHcCCeEeec-ccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhh-hhhhccCcEEEEecccchhhhcccccc
Confidence 345666788888 7899999888888764 66656665 7888866655553 345556688888644332111112234
Q ss_pred ChhhhhhhhcCCCcE-EEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 353 GSFDVTFMACLPNMV-VMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 353 ~~~d~~~~~~~p~~~-v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
...++.++| |-++ +..|.+..+.-..++.|++ -.++|+|+-++-.
T Consensus 124 e~dQvel~r--p~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 124 ELDQVELFR--PLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred cccHHhhhh--hhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 444555666 3443 4788888888777777765 3577899876655
No 283
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=78.54 E-value=11 Score=40.57 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHHHhc-C-CCEEEEecCCCCCcChHH--HHHhCCC-CeeecccchHHHHHHHHHHhh-CCCeeEEeechhhHHHH
Q 008493 246 AEALIAEAEV-D-KDVVAIHAAMGGGTGLNL--FLRRFPT-RCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRA 319 (563)
Q Consensus 246 ~~~l~~~~~~-~-~~v~~~~~D~~~s~~~~~--~~~~~p~-r~i~~gi~E~~~~~~a~G~a~-~G~~~~~~~~~~f~~~a 319 (563)
++.|.+.+.+ + ..++.+-.| +++.- ...++|+ |.+.+ -+|.++.-+|=|+|. .|.-.++.||+..-.-|
T Consensus 7 G~YL~~RL~qlgi~~iFGVPGD----yNL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 7 GDYLFDRLAQLGIKSIFGVPGD----YNLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred HHHHHHHHHhcCCceeeeCCCc----ccHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 3444444433 2 345555445 44432 2234444 33333 579999999999996 48888888999887666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCC--hhhhhhhhcCC-Cc----EEEecCC--HHHHHHHHHHHHhcC
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG--SFDVTFMACLP-NM----VVMAPSD--EAELFHMVATAAAID 388 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~--~~d~~~~~~~p-~~----~v~~P~~--~~e~~~~l~~a~~~~ 388 (563)
++-|- -+--.++||+.+...+.. ....-.-|+. ..|...+..+. ++ ..+.+.+ +.|...+++.++. .
T Consensus 82 ~NGIA-GSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~ 159 (557)
T COG3961 82 LNGIA-GSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-Q 159 (557)
T ss_pred hcccc-hhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-h
Confidence 54431 111258999988643322 1222233442 22332222222 21 2355555 7888999999876 7
Q ss_pred CCCEEEEecCC
Q 008493 389 DRPSCFRYPRG 399 (563)
Q Consensus 389 ~~P~~i~~~~~ 399 (563)
++|+||.++..
T Consensus 160 ~RPvYI~lP~d 170 (557)
T COG3961 160 RRPVYIGLPAD 170 (557)
T ss_pred cCCeEEEcchH
Confidence 89999998765
No 284
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=77.77 E-value=11 Score=38.24 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=49.9
Q ss_pred eEEeechhhH---HHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC---Chhhhhhh--hcCCCcEEEecCCHHHHH
Q 008493 307 PFCAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GSFDVTFM--ACLPNMVVMAPSDEAELF 378 (563)
Q Consensus 307 ~~~~~~~~f~---~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~---~~~d~~~~--~~~p~~~v~~P~~~~e~~ 378 (563)
+.+..|++.. -..||.+ |+++.+++|+|+++-.-++ | -|.+|. ...|. +. ..+||+.| .=.|.--++
T Consensus 189 v~~alYGDGAaNQGQ~fEa~-NMA~LW~LP~IFvCENN~y-G-MGTs~~Rasa~tey-ykRG~yiPGl~V-dGmdvlaVr 263 (394)
T KOG0225|consen 189 VCFALYGDGAANQGQVFEAF-NMAALWKLPVIFVCENNHY-G-MGTSAERASASTEY-YKRGDYIPGLKV-DGMDVLAVR 263 (394)
T ss_pred eEEEEeccccccchhHHHHh-hHHHHhCCCEEEEEccCCC-c-cCcchhhhhcChHH-HhccCCCCceEE-CCcchhhHH
Confidence 3444588876 2567877 9999999999999954332 1 122222 22221 22 24888765 223333334
Q ss_pred HHHHHHHh---cCCCCEEEEecCC
Q 008493 379 HMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 379 ~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
...+.|.+ +.++|.++-+...
T Consensus 264 ~a~KfA~~~~~~g~GPilmE~~TY 287 (394)
T KOG0225|consen 264 EATKFAKKYALEGKGPILMEMDTY 287 (394)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeee
Confidence 44444432 3578988866543
No 285
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=77.48 E-value=19 Score=32.30 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEc-ccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIG-DGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~G-DG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+..+|.|++++. .++.+|++. .-++. ....++..|...+.|+++|.-+..
T Consensus 46 A~~~A~g~~~~~-----~~~~v~~~~~gpG~~--n~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 46 AVGMADGYARAT-----GKPGVVLVTSGPGLT--NAVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHH-----CCCEEEEEcCCCcHH--HHHHHHHHHHhhCCCEEEEeCCCc
Confidence 456677777763 234444443 44454 345788888888999999997765
No 286
>PLN02790 transketolase
Probab=77.34 E-value=12 Score=42.45 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEec----CCHHHHHHHHHHHHhcCC
Q 008493 317 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP----SDEAELFHMVATAAAIDD 389 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P----~~~~e~~~~l~~a~~~~~ 389 (563)
-.++|.+ +.++..++| ++++...-++ .-++++... .+++ ..+..+ ||.++.+ .|..++..++++|.+..+
T Consensus 152 G~~~EAl-~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~ 228 (654)
T PLN02790 152 GISNEAA-SLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTD 228 (654)
T ss_pred hHHHHHH-HHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 3567776 889999997 6666665553 223333221 2332 345665 8999988 567888888888754357
Q ss_pred CCEEEEec
Q 008493 390 RPSCFRYP 397 (563)
Q Consensus 390 ~P~~i~~~ 397 (563)
+|++|...
T Consensus 229 ~P~lI~~~ 236 (654)
T PLN02790 229 KPTLIKVT 236 (654)
T ss_pred CeEEEEEE
Confidence 89888653
No 287
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=76.66 E-value=27 Score=32.41 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=26.9
Q ss_pred hhhc-CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEE
Q 008493 161 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 201 (563)
Q Consensus 161 ~~~~-G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~ 201 (563)
+..+ |+.++.+ .|..++...++.+.+.+.++|++|...
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4444 6776666 889999999998886324689987654
No 288
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=74.29 E-value=8.8 Score=31.27 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc----cCCEEEEEeCCCCCChHHHHH
Q 008493 426 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSHVV 497 (563)
Q Consensus 426 g~dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~----~~~~vvvvE~~~~gg~g~~v~ 497 (563)
..+|+|++.|+ ....|..|.+.|++.|++...+++.. +.+...++.+ .+=+.|++.....||+....+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHH
Confidence 45799999883 57889999999999999999999752 2222222222 233566776655788865543
No 289
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=72.92 E-value=20 Score=37.29 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=48.1
Q ss_pred CeeEEeechhhH-H--HHHHHHHHHhccCCCCeEEEEeCCCC-CCC--CCCCCC-ChhhhhhhhcCCCcEEEecCCHHHH
Q 008493 305 LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGL-VGA--DGPTHC-GSFDVTFMACLPNMVVMAPSDEAEL 377 (563)
Q Consensus 305 ~~~~~~~~~~f~-~--~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~--~G~tH~-~~~d~~~~~~~p~~~v~~P~~~~e~ 377 (563)
-+++++++++.. + ..++.+ +.++..++|+++++.+-+. .+. ...+.. ...+.+-.-.+|+++| .=.|..++
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Eal-n~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av 234 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFECL-NMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAV 234 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHHH-HHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHH
Confidence 355666665543 1 234444 8889999999999865552 111 011111 1222222224666655 44566655
Q ss_pred HHHHHHHHh---cCCCCEEEEe
Q 008493 378 FHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 378 ~~~l~~a~~---~~~~P~~i~~ 396 (563)
...++.|++ ..++|++|-.
T Consensus 235 ~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 235 REVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHhCCCCEEEEE
Confidence 555555443 3478988855
No 290
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=72.37 E-value=10 Score=29.29 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCCCCChHHH
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~~gg~g~~ 495 (563)
+++|.+. +....|..|.+.|++.|++...+++..-.+ ..+.+.+... .+-++|++.+...||+-+.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 4566655 344779999999999999999999874322 2233444432 2336777776557887543
No 291
>PRK05899 transketolase; Reviewed
Probab=72.29 E-value=44 Score=37.79 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=53.5
Q ss_pred eeEEeechh--hH-HHHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC-Chhhh-hhhhcCCCcEEEecC--CHHHH
Q 008493 306 KPFCAIYSS--FM-QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS--DEAEL 377 (563)
Q Consensus 306 ~~~~~~~~~--f~-~~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~-~~~d~-~~~~~~p~~~v~~P~--~~~e~ 377 (563)
+.++.+.++ |. ...+|.+ +.++..++| ++++....++ +..+++.. ...++ ..++.+ ||.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 345555444 33 2336666 678888998 5565555554 22222221 12233 344554 78887777 89999
Q ss_pred HHHHHHHHhcCCCCEEEEec
Q 008493 378 FHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 378 ~~~l~~a~~~~~~P~~i~~~ 397 (563)
...+++|.+ .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999865 4689887653
No 292
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=72.12 E-value=34 Score=38.66 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHH-HhhcccCCCEEEEEeCCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 89 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal-~~a~~~~~pli~iv~nN~~ 89 (563)
++.|.|+|++- -++++++ =+.|.. -.++.+ +.++..++|+++++...+.
T Consensus 365 vg~AaGlA~~G-----~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 365 VTFAAGMAIEG-----YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHCC-----CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 67788887641 2445555 455654 566665 5567788999999987763
No 293
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=70.41 E-value=63 Score=34.62 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=85.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCC------CCCcChHHHHHhCCCCe-eecccchHHHHHHHHHHhhC-C-CeeE
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAM------GGGTGLNLFLRRFPTRC-FDVGIAEQHAVTFAAGLACE-G-LKPF 308 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~------~~s~~~~~~~~~~p~r~-i~~gi~E~~~~~~a~G~a~~-G-~~~~ 308 (563)
..++.+|+.+.|...+....+++.+-+-+ |+..++..-.+..|+.. .--|-+||+|+-+|++.|.. . .|-+
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 34566777777776665554432222111 12223433334455554 34578999999999999975 3 3434
Q ss_pred Eee--chhhHHHHHHHHHHHhc---cCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEec--------CCH
Q 008493 309 CAI--YSSFMQRAYDQVVHDVD---LQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAP--------SDE 374 (563)
Q Consensus 309 ~~~--~~~f~~~a~dqi~~~a~---~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P--------~~~ 374 (563)
..+ .++....+. ..++ -.++||.++- ..-+ +-...|.-|+.++..-.. +---.-+.| ..|
T Consensus 86 A~tsSiGPGA~Nmv----TaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~~-it~NDcfrPVSRYfDRItRP 159 (617)
T COG3962 86 AVTSSIGPGAANMV----TAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDGT-ITTNDCFRPVSRYFDRITRP 159 (617)
T ss_pred EEecccCCcHHHHH----HHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccCc-eecccccccHHHHhhhcCCH
Confidence 333 566653331 3333 3689999873 2122 233455566665532111 110112333 457
Q ss_pred HHHHHHHHHHHhc-----CCCCEEEEecCC
Q 008493 375 AELFHMVATAAAI-----DDRPSCFRYPRG 399 (563)
Q Consensus 375 ~e~~~~l~~a~~~-----~~~P~~i~~~~~ 399 (563)
+++...+..|++- +-+|+.+.++..
T Consensus 160 EQl~sal~rA~~VmTDPA~~GpvTl~l~QD 189 (617)
T COG3962 160 EQLMSALPRAMRVMTDPADCGPVTLALCQD 189 (617)
T ss_pred HHHHHHHHHHHHHhCChhhcCceEEEechh
Confidence 8999999988872 346788877543
No 294
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=69.84 E-value=48 Score=30.43 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcc--cccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGD--GAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GD--G~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+..+|.|++.+. ++..+|+.-= |.++ ..-++..|...+.|+++|.-+-.
T Consensus 51 A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 51 AAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESS
T ss_pred hHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccc
Confidence 456677777664 4566666544 4333 33567777777899999997765
No 295
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=68.80 E-value=27 Score=37.87 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=23.3
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 199 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~ 199 (563)
|+.++.+ .|..+....++.+.+ .++|++|.
T Consensus 280 gl~V~~P---~d~~d~~~ll~~ai~--~~~Pv~il 309 (464)
T PRK11892 280 GLKVVAP---YSAADAKGLLKAAIR--DPNPVIFL 309 (464)
T ss_pred CCEEEEe---CCHHHHHHHHHHHhh--CCCcEEEE
Confidence 6666666 788888888888886 57898864
No 296
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=67.81 E-value=22 Score=36.03 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=48.7
Q ss_pred eeEEeechh--hHH-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC--Chhhhh-hhh--cCCCcEEEecCCHHHH
Q 008493 306 KPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVT-FMA--CLPNMVVMAPSDEAEL 377 (563)
Q Consensus 306 ~~~~~~~~~--f~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~--~~~d~~-~~~--~~p~~~v~~P~~~~e~ 377 (563)
++++.++++ |.+ ..++.+ +.+...++|+++++.+-++ +...+++. ...++. ... .+|+. .+.-.|+.++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l-~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEAL-NFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred CEEEEEeCCCccccchHHHHH-HHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 445555544 433 234555 8889999999998865553 22122111 112222 112 23433 2344577888
Q ss_pred HHHHHHHHh---cCCCCEEEEe
Q 008493 378 FHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 378 ~~~l~~a~~---~~~~P~~i~~ 396 (563)
...++.|++ ..++|++|-.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 888887764 3478988855
No 297
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=67.65 E-value=51 Score=36.09 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=89.3
Q ss_pred HHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEee--chhhHHHHHHHHHHHhc
Q 008493 251 AEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVD 328 (563)
Q Consensus 251 ~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~--~~~f~~~a~dqi~~~a~ 328 (563)
++.+..-+=+++++- +.|+-+.-..+++++--.-+-|.|.++.-+|.|+|.+-.+|++-+ .+.-....+-.+ --+.
T Consensus 17 eL~r~GV~~vvicPG-SRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PAV-iEA~ 94 (566)
T COG1165 17 ELARLGVRDVVICPG-SRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPAV-IEAN 94 (566)
T ss_pred HHHHcCCcEEEECCC-CCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHHH-Hhhh
Confidence 334445666788766 456766666677776667889999999999999999987776554 444333333444 5788
Q ss_pred cCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEE--EecCCHHHHHHHHHHH
Q 008493 329 LQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVV--MAPSDEAELFHMVATA 384 (563)
Q Consensus 329 ~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v--~~P~~~~e~~~~l~~a 384 (563)
+.+.|.++...++-. .-.-| .-|.+.+..+|.+.|...+ =.|.+..++...+++.
T Consensus 95 ~srvpLIVLTADRP~EL~~~G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~ 152 (566)
T COG1165 95 LSRVPLIVLTADRPPELRGCG-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTI 152 (566)
T ss_pred hcCCceEEEeCCCCHHHhcCC-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHH
Confidence 999999888654432 11112 3466777788888888765 3788888877776654
No 298
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.11 E-value=17 Score=30.18 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHHHH
Q 008493 426 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVV 497 (563)
Q Consensus 426 g~dv~iv~~G----~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~v~ 497 (563)
..+|+|++.| +....|..|.+.|++.|++...+|+..- |--.+.+.+.. ..+=+.|++.....||+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 3578999888 4578899999999999999999998521 21112222221 1233566777655788865544
No 299
>PRK12753 transketolase; Reviewed
Probab=65.36 E-value=44 Score=38.10 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEecC---CHHHHHHHHHHHHhcCCCC
Q 008493 318 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS---DEAELFHMVATAAAIDDRP 391 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P~---~~~e~~~~l~~a~~~~~~P 391 (563)
..+|.+ +.++..++| ++++.+.-++ .-+|+++.. .+++ ..++.+ ||.++.+. |..++...+.+|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P 238 (663)
T PRK12753 162 ISHEVC-SLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKP 238 (663)
T ss_pred HHHHHH-HHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCe
Confidence 567776 889999997 6666665553 223444331 1222 345554 88887644 4556666666665445789
Q ss_pred EEEEec
Q 008493 392 SCFRYP 397 (563)
Q Consensus 392 ~~i~~~ 397 (563)
++|...
T Consensus 239 ~~I~~~ 244 (663)
T PRK12753 239 SLIICR 244 (663)
T ss_pred EEEEEE
Confidence 888663
No 300
>PTZ00089 transketolase; Provisional
Probab=65.29 E-value=64 Score=36.80 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEecC----CHHHHHHHHHHHHhcCC
Q 008493 317 QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS----DEAELFHMVATAAAIDD 389 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P~----~~~e~~~~l~~a~~~~~ 389 (563)
-.++|.+ +.++..++| ++++.+.-+. .-+|+++-. .+++ ..+..+ ||.++.+. |..++...++.|....+
T Consensus 163 G~~~EAl-~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~ 239 (661)
T PTZ00089 163 GVSQEAL-SLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKG 239 (661)
T ss_pred HHHHHHH-HHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 3567777 788999987 5666665553 234444321 2222 356665 99999884 67777777777754346
Q ss_pred CCEEEEec
Q 008493 390 RPSCFRYP 397 (563)
Q Consensus 390 ~P~~i~~~ 397 (563)
+|++|...
T Consensus 240 ~P~~I~~~ 247 (661)
T PTZ00089 240 KPKLIIVK 247 (661)
T ss_pred CcEEEEEE
Confidence 89888663
No 301
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=64.31 E-value=69 Score=36.40 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHH-HhhcccCCCEEEEEeCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal-~~a~~~~~pli~iv~nN~ 88 (563)
++.|.|+|+.- -+++++.+.+ |.. ..++.+ +.++..++|+++++..-+
T Consensus 374 vg~AaGlA~~G-----~~P~v~~f~~--Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G 422 (641)
T PRK12571 374 VTFAAGLAAAG-----LKPFCAVYST--FLQ-RGYDQLLHDVALQNLPVRFVLDRAG 422 (641)
T ss_pred HHHHHHHHHCC-----CEEEEEehHH--HHH-HHHHHHHHHHhhcCCCeEEEEECCC
Confidence 67788888731 3556666554 444 666776 557888899999996666
No 302
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=62.78 E-value=74 Score=29.14 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHhhhhcCCCCcEEEEE--cccccccchhHHHHHhhcccCCCEEEEEeC
Q 008493 30 STSISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILND 86 (563)
Q Consensus 30 G~~l~~a~G~A~A~~~~~~~~~vv~~~--GDG~~~~G~~~Eal~~a~~~~~pli~iv~n 86 (563)
..+.-+|-|+|.+. .++.+|++ |=|..+ ..-++..|...+.|+++|.-+
T Consensus 45 ~~A~~mAdgyar~s-----g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 45 RSAAFFALGLAKAS-----GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 33455677777653 35556555 444443 335677777888999999854
No 303
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=62.69 E-value=62 Score=36.64 Aligned_cols=48 Identities=10% Similarity=0.277 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHH-HhhcccCCCEEEEEeCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal-~~a~~~~~pli~iv~nN~ 88 (563)
++.|.|+|+. | -+++++++. .|.. ..++.+ +.++..++|++|++...+
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~fs--~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG 460 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAIDRAG 460 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEehH--HHHH-HHHHHHHHHHhhcCCCEEEEEeCCc
Confidence 6677777774 2 355666654 3433 455554 566778899999997776
No 304
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=62.36 E-value=50 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.4
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 200 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v 200 (563)
|+.++.+ .|..++...++.+.+ .++|++|..
T Consensus 165 nl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 165 GLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 6666666 889999999998886 578998864
No 305
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=62.11 E-value=99 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+..+|.|.+.+- .+.++...|-|..+ ....|..|...+.|+++|+-+..
T Consensus 53 A~~~A~g~~r~~-----~~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 53 AAEAAIGASAAG-----ARAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHhhC-----CcEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 455566666542 22334445666664 44678888777899999997654
No 306
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=61.45 E-value=48 Score=34.75 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=56.4
Q ss_pred HHHHHHhh----CCCe-eEEeechhhH---HHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC--CChhhhh-hhhcC
Q 008493 295 TFAAGLAC----EGLK-PFCAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--CGSFDVT-FMACL 363 (563)
Q Consensus 295 ~~a~G~a~----~G~~-~~~~~~~~f~---~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH--~~~~d~~-~~~~~ 363 (563)
.+|+|+|+ .|.. ..+.++++.. -..+|.+ |.++..++|+++++..-++ +..-++. +....+. ....+
T Consensus 145 p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Eal-n~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~ 222 (362)
T PLN02269 145 PLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEAL-NIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYV 222 (362)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHH-HHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCC
Confidence 34555554 3432 2333355442 2345665 8999999999999876553 2111111 1122221 11235
Q ss_pred CCcEEEecCCHHHHHHHHHHHHh--cCCCCEEEEec
Q 008493 364 PNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRYP 397 (563)
Q Consensus 364 p~~~v~~P~~~~e~~~~l~~a~~--~~~~P~~i~~~ 397 (563)
|++. +.=.|+.++...+..|++ +..+|++|-..
T Consensus 223 p~~~-VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 223 PGLK-VDGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred CeEE-ECCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6654 477788888888887764 23789988664
No 307
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=61.41 E-value=60 Score=36.94 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
+++|.|+|+... -+++++. -..|.. ..++++..++..++|+++|....+
T Consensus 409 v~~AaGlA~~gG----~~p~~~t--f~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALHGG----FKPYGGT--FLMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHcCC----CeEEEEE--hHHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 577778877311 1333322 335554 667888888888899999997766
No 308
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=60.77 E-value=23 Score=32.40 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeC
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 486 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~ 486 (563)
++||+-|..-..+.++++.|++.|+.+=.|-+. ..+.+.+.....+.+.|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 567788877777888999999999876555554 4688889888877788988875
No 309
>PRK12754 transketolase; Reviewed
Probab=60.59 E-value=67 Score=36.59 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEe---cCCHHHHHHHHHHHHhcCCCC
Q 008493 318 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMA---PSDEAELFHMVATAAAIDDRP 391 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~---P~~~~e~~~~l~~a~~~~~~P 391 (563)
..+|.+ +.++..++| ++++.+.-++ .-+|+++.. .+++ .-++.+ ||.++. =.|..++...+.+|....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 467776 789999999 4566665553 334555432 2332 234443 777654 345666666666664445789
Q ss_pred EEEEec
Q 008493 392 SCFRYP 397 (563)
Q Consensus 392 ~~i~~~ 397 (563)
++|...
T Consensus 239 t~I~~~ 244 (663)
T PRK12754 239 SLLMCK 244 (663)
T ss_pred EEEEEE
Confidence 888664
No 310
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=59.48 E-value=99 Score=35.31 Aligned_cols=50 Identities=10% Similarity=0.258 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHH-HHhhcccCCCEEEEEeCCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA-MNNAGYLDSDMIVILNDNKQ 89 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Ea-l~~a~~~~~pli~iv~nN~~ 89 (563)
.++.|.|+|+. | -+++++++. .|.. -.++. .+.++..++|++|++...+.
T Consensus 410 ~vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 410 AVTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred HHHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 36777777774 2 466777655 4443 45554 46777888999999987763
No 311
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=58.25 E-value=67 Score=32.81 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=53.6
Q ss_pred eeCCcEEEEEechh-HHHHHHHHHHHHhCCCc-eEEeeccccccCcHHHH-----HHHhccCCEEEEEeCCCCCChHHHH
Q 008493 424 IEGERVALLGYGTA-VQSCLAASALLESNGLR-LTVADARFCKPLDHALI-----RSLAKSHEVLITVEEGSIGGFGSHV 496 (563)
Q Consensus 424 ~~g~dv~iv~~G~~-~~~~~~Aa~~L~~~Gi~-v~vi~~~~l~Pf~~~~i-----~~~~~~~~~vvvvE~~~~gg~g~~v 496 (563)
+.++ =+|+++|.. ..+..+|.+.++++|.. +-++++.+.+|-|.+.+ .++....+..|=+-+|..|-+....
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLGILAPLA 223 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccchhHHHH
Confidence 3454 567888865 57888999999988766 89999999999888743 3444555677777777766444433
Q ss_pred HHHH
Q 008493 497 VQFL 500 (563)
Q Consensus 497 ~~~l 500 (563)
+-.|
T Consensus 224 AvAL 227 (347)
T COG2089 224 AVAL 227 (347)
T ss_pred HHHh
Confidence 4334
No 312
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.96 E-value=28 Score=31.04 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecccc-ccC-------------cHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFC-KPL-------------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l-~Pf-------------~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
....+..+++.|++.|++++++++... .|+ +.+.+.+.+...+.+|+.=..+.+++...+..++
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHH
Confidence 345566667788888999999999976 221 1134455566678777766555677777776655
No 313
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=56.59 E-value=65 Score=30.93 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred CCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCce-EEeecCCcccCCCCH
Q 008493 452 GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKW-RPLVLPDRYIDHGSP 527 (563)
Q Consensus 452 Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 527 (563)
|...+=+.+.|+.+-+.+.++..+....+++++-+.. ..-.+|+..|.++|+-..+.-+ -+++.++.-...++.
T Consensus 114 g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~--~~P~~IA~~L~~~G~~~~~~~VlE~L~~~~Eri~~~~~ 188 (210)
T COG2241 114 GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDD--FGPAEIAKLLTENGIGDSRVTVLENLGYPDERITDGTA 188 (210)
T ss_pred CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCC--CCHHHHHHHHHhCCCCCceEEEEcccCCCchhhhcCch
Confidence 5555545555556778888888776666777776653 2357899999999863222222 255655544444433
No 314
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=55.40 E-value=1.3e+02 Score=33.12 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEe
Q 008493 49 KNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 85 (563)
Q Consensus 49 ~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~ 85 (563)
|=.|.++.+|-+.+. .+.||+..|...+.|+++-|+
T Consensus 226 DIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAin 261 (683)
T KOG1145|consen 226 DIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAIN 261 (683)
T ss_pred cEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEe
Confidence 556677888888876 788999999999999987774
No 315
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=54.10 E-value=73 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=37.8
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCC
Q 008493 428 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 428 dv~iv~~G~-~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
++.|++.+. ....+++.++.|++.|+.+.+ +... +.+....-.......+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 566777765 457889999999999999977 3333 343333222233456778888764
No 316
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=54.10 E-value=1.3e+02 Score=27.42 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEE--cccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~--GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
.-+|.|+|.+. +++.+|++ |=|.++ ..-++..|...+.|+++|.-+-.
T Consensus 51 ~~mA~gyar~t-----g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 51 AFAASAEAKLT-----GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHHh-----CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 45666776653 34444444 555554 33577778888899999985543
No 317
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=53.54 E-value=40 Score=34.55 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=49.2
Q ss_pred eeEEeechh--hHH-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC----C-ChhhhhhhhcCCCcEEEecCCHHHH
Q 008493 306 KPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH----C-GSFDVTFMACLPNMVVMAPSDEAEL 377 (563)
Q Consensus 306 ~~~~~~~~~--f~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH----~-~~~d~~~~~~~p~~~v~~P~~~~e~ 377 (563)
++++.++++ |.+ ..++.+ +.++..++|+++++.+-++ +...++. . ...+.+-.-.+|+.+ +.=.|+.++
T Consensus 133 ~~vv~~~GDGa~~~g~~~eal-n~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~-Vdg~d~~av 209 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESF-NMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGER-VDGMDVLAV 209 (315)
T ss_pred CEEEEEeCCCcccccHHHHHH-HHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 455555544 432 223444 7888999999998865553 2211111 1 122222222455543 455577777
Q ss_pred HHHHHHHHh---cCCCCEEEEe
Q 008493 378 FHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 378 ~~~l~~a~~---~~~~P~~i~~ 396 (563)
...++.|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777764 3568988865
No 318
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=53.15 E-value=21 Score=37.26 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
++.+|+|+++| ..++.+.+-|..+. ..+|.+..|+-..+|+++++-+-.
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC
Confidence 57889999988 67799999999998 778999999999999998886643
No 319
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=52.46 E-value=44 Score=25.52 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=40.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-c-CCEEEEEeCCCCCChHHH
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-S-HEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~-~~~vvvvE~~~~gg~g~~ 495 (563)
++|.+. +....|..|.+.|++.|++...+++..- |--.+.+.+... . +=++|+++....||+.+.
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 344443 4458899999999999999999999743 211122322222 1 335667776657887644
No 320
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=52.07 E-value=1.1e+02 Score=32.92 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=46.9
Q ss_pred eeEEeechhhH--H-HHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhh---hhhcCCCcEEEecCCHHHHH
Q 008493 306 KPFCAIYSSFM--Q-RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVT---FMACLPNMVVMAPSDEAELF 378 (563)
Q Consensus 306 ~~~~~~~~~f~--~-~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~---~~~~~p~~~v~~P~~~~e~~ 378 (563)
++++.++++.. . ..+|.+ +.++..++||++++.+-+. .+..-..+....++. -.-.+|++. +.=.|+.++.
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaL-n~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~-VDG~D~~av~ 301 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVH-VDGMDVLKVR 301 (433)
T ss_pred CEEEEEECCCccccChHHHHH-HHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEE-ECCCCHHHHH
Confidence 45556665543 2 235555 8899999999999865542 111000011112221 122355554 3556666666
Q ss_pred HHHHHHHh---cCCCCEEEEe
Q 008493 379 HMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 379 ~~l~~a~~---~~~~P~~i~~ 396 (563)
..+..|++ ..++|++|-.
T Consensus 302 ~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 302 EVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 55554443 3578988754
No 321
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=51.85 E-value=79 Score=30.81 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
++.+++|++++ ..++++...=.++. ...|.|..++..++|+++++-+-.
T Consensus 48 A~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~ 96 (230)
T PF01855_consen 48 AMEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRA 96 (230)
T ss_dssp HHHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB-
T ss_pred HHHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECC
Confidence 57888898887 56678887777777 666899999999999988887654
No 322
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=50.89 E-value=64 Score=25.28 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCCCCChHHHHHHH
Q 008493 426 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQF 499 (563)
Q Consensus 426 g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~~gg~g~~v~~~ 499 (563)
..+|+|.+ -+....|..|.+.|++.|++...+++..- + +.+.+.+... .+=++|+++....||+. +|..+
T Consensus 7 ~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~-~-~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~ 77 (79)
T TIGR02190 7 PESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND-A-RGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAY 77 (79)
T ss_pred CCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC-h-HHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHH
Confidence 34566555 46778899999999999999999998531 1 1223333221 22245566654467773 34333
No 323
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=50.86 E-value=55 Score=33.88 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=51.6
Q ss_pred eeEEeechhhH--HHHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEec---CCHHHH
Q 008493 306 KPFCAIYSSFM--QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAEL 377 (563)
Q Consensus 306 ~~~~~~~~~f~--~~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P---~~~~e~ 377 (563)
+.+|-+...=+ -.++|.+ +.++..++. ++++.+.-++ ..+|.+.-. .+++ .-++. -||.|+.. .|.++.
T Consensus 145 ~vy~l~GDGel~EG~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a-~Gw~v~~v~dGhd~~~i 221 (332)
T PF00456_consen 145 RVYVLMGDGELQEGSVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEA-FGWNVIEVCDGHDVEAI 221 (332)
T ss_dssp -EEEEEEHHHHHSHHHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHH-TT-EEEEEEETTBHHHH
T ss_pred eEEEEecCccccchhhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHH-hhhhhcccccCcHHHHH
Confidence 44544432223 3567776 678888887 5555554443 234544321 2232 23555 48988776 678888
Q ss_pred HHHHHHHHhcCCCCEEEEecCC
Q 008493 378 FHMVATAAAIDDRPSCFRYPRG 399 (563)
Q Consensus 378 ~~~l~~a~~~~~~P~~i~~~~~ 399 (563)
...+.+|-...++|++|.....
T Consensus 222 ~~A~~~a~~~~~kP~~Ii~~Tv 243 (332)
T PF00456_consen 222 YAAIEEAKASKGKPTVIIARTV 243 (332)
T ss_dssp HHHHHHHHHSTSS-EEEEEEE-
T ss_pred HHHHHHHHhcCCCCceeecceE
Confidence 8888888655589998876443
No 324
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=50.29 E-value=63 Score=26.03 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=39.2
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHH-hccCCEEEEEeC
Q 008493 428 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL-AKSHEVLITVEE 486 (563)
Q Consensus 428 dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~-~~~~~~vvvvE~ 486 (563)
++.|++.|. ....|.+.++.|++.|+.+.+-+ . -..+. +.++.. .....-++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~-k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLG-KQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHH-HHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchh-HHHHHHhhcCCeEEEEECc
Confidence 478888888 35788899999999999988877 2 23333 334443 355677777765
No 325
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=50.22 E-value=1.3e+02 Score=34.46 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHH-HhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal-~~a~~~~~pli~iv~nN~ 88 (563)
.++.|.|+|..- -++++++.. .|.+ -.++-+ +.++..++|++|++..-+
T Consensus 435 aVt~AAGLA~~G-----~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aG 484 (701)
T PLN02225 435 AVTFSAGLSSGG-----LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAG 484 (701)
T ss_pred HHHHHHHHHHCC-----CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCc
Confidence 367777877642 367777774 6655 555654 446777899999997655
No 326
>PRK10638 glutaredoxin 3; Provisional
Probab=50.21 E-value=51 Score=26.09 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCCCCChHHH
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~~gg~g~~ 495 (563)
++|.+. .....|..|.+.|++.|+...++++..-... .+.+.+... .+=++|+++....||+.+.
T Consensus 4 v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~~igG~~~~ 69 (83)
T PRK10638 4 VEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQHIGGCDDL 69 (83)
T ss_pred EEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 455543 3346888999999999999999988532111 122323221 1225566665557888533
No 327
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=50.02 E-value=1.4e+02 Score=31.53 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
++.+++|+++| ..++++.+.=+++. ..+|.+..++-.++|+++++-+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~ 108 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG 108 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC
Confidence 57889999887 56688887777777 567999999998999999887765
No 328
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=49.31 E-value=1.6e+02 Score=31.16 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 86 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~n 86 (563)
++.+++|+++| ..++.+.+-=.++. ..+|.+..|+..++|+++++-+
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~ 107 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVN 107 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEec
Confidence 57889999998 66788888888887 6779999999999998777753
No 329
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=48.25 E-value=1.1e+02 Score=30.75 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=43.1
Q ss_pred cCCCCCchh-hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhccc-CCCEEEEEeCCCCcc
Q 008493 24 FGTGHSSTS-ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVS 91 (563)
Q Consensus 24 ~~~g~~G~~-l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~-~~pli~iv~nN~~~s 91 (563)
|..|++=+. ++.|.|+|++-+ ++. +++=+.|..+-.||-+...-.+ ++|+.+|+.+-| ++
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~Gk-----~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G-~t 113 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAGK-----KPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAG-VT 113 (312)
T ss_pred eecchHHHHHHHHHHHHHhcCC-----Cce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCC-cc
Confidence 445655553 788999998743 333 4455788888899988776554 699999999888 44
No 330
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.07 E-value=1.7e+02 Score=28.68 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEEEEechh-HHHHHHHHHHH-HhCCCceEEeeccccccCcHHH-----HHHHhccCCEEEEEeCCCCCChHHHHHH
Q 008493 429 VALLGYGTA-VQSCLAASALL-ESNGLRLTVADARFCKPLDHAL-----IRSLAKSHEVLITVEEGSIGGFGSHVVQ 498 (563)
Q Consensus 429 v~iv~~G~~-~~~~~~Aa~~L-~~~Gi~v~vi~~~~l~Pf~~~~-----i~~~~~~~~~vvvvE~~~~gg~g~~v~~ 498 (563)
=+|+++|.. ..++.+|++.+ +..+.++-++++.+-+|-+.+. |..+-+..+..|=.-+|..| +..-+++
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~g-~~~~~~A 190 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTDG-IEAPIAA 190 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SSS-SHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCCC-cHHHHHH
Confidence 477888865 58888999999 5568899999999999977753 34444566766767777654 4444443
No 331
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=47.14 E-value=1.5e+02 Score=30.55 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=46.3
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCCc---eEEeeccccccCcHH-----HHHHHhccCCEEEEEeCCCCCChHHHHHHH
Q 008493 429 VALLGYGTA-VQSCLAASALLESNGLR---LTVADARFCKPLDHA-----LIRSLAKSHEVLITVEEGSIGGFGSHVVQF 499 (563)
Q Consensus 429 v~iv~~G~~-~~~~~~Aa~~L~~~Gi~---v~vi~~~~l~Pf~~~-----~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~ 499 (563)
=+|+++|.. ..+..+|++.+++.|.+ +-++++.+-+|-+.+ .|..+-+.++..|-.-+|.. |....+++.
T Consensus 135 PvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~-G~~~~~aAv 213 (329)
T TIGR03569 135 PVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL-GIEAPIAAV 213 (329)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc-cHHHHHHHH
Confidence 367777854 58888999999888874 889999999997665 34333344554454556654 454444443
No 332
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=46.10 E-value=1.2e+02 Score=31.15 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=24.0
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 200 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v 200 (563)
|+.++.+ .|..++..+++.+.+ .++|++|..
T Consensus 142 ~l~V~~P---~d~~e~~~~l~~a~~--~~~Pv~i~~ 172 (327)
T PRK09212 142 GLKVVAP---YFAADCKGLLKTAIR--DPNPVIFLE 172 (327)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 5665555 889999999998886 578998754
No 333
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=45.93 E-value=1.2e+02 Score=31.30 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=23.3
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 199 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~ 199 (563)
|+.++.+ .|..++...++.+.+ .++|++|.
T Consensus 142 gl~V~~P---sd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 142 GLQIVAC---STPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 5665555 788899999988886 57898876
No 334
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=45.46 E-value=53 Score=28.10 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|.+|.+.|+++|++..++|+.. .|++.+.+.+.++..
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 34678899999999999999999985 677888887776643
No 335
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.35 E-value=1.1e+02 Score=26.32 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=37.7
Q ss_pred cEEEEEec--hh-HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHH-hccCCEEEEEeCC
Q 008493 428 RVALLGYG--TA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL-AKSHEVLITVEEG 487 (563)
Q Consensus 428 dv~iv~~G--~~-~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~-~~~~~~vvvvE~~ 487 (563)
++.|++.+ .. ...+++.++.|+++|+.+.+-. . +.+.. .++.. -.+.+.++++.+.
T Consensus 28 ~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~k-qlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 28 KVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGR-RYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHH-HHHHhHhcCCCEEEEECcC
Confidence 67888888 44 5688888999999999998833 2 34333 33333 3456777777765
No 336
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.34 E-value=1.1e+02 Score=23.74 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=34.9
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeC
Q 008493 428 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEE 486 (563)
Q Consensus 428 dv~iv~~G~~-~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~ 486 (563)
++.|++.+.. ...+++.+..|++.|+.+.+.... +.++ +.+.... .....++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 5677777764 467888899999999988774432 2332 3343332 33456666654
No 337
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=42.23 E-value=59 Score=25.24 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHHHH
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVV 497 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~v~ 497 (563)
.....|.+|.+.|++.|++...+++..- |-..+.+.+.. ..+=++|+++....||+.+...
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~ 68 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYA 68 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHH
Confidence 4567889999999999999999998632 21122233222 1223667777666788875533
No 338
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=42.01 E-value=17 Score=33.01 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=41.0
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCC-ceEEeeccccccCcH-------HHHHHHhccCCEEEEEeCCC-CCChHHHH
Q 008493 430 ALLGYGTAV----QSCLAASALLESNGL-RLTVADARFCKPLDH-------ALIRSLAKSHEVLITVEEGS-IGGFGSHV 496 (563)
Q Consensus 430 ~iv~~G~~~----~~~~~Aa~~L~~~Gi-~v~vi~~~~l~Pf~~-------~~i~~~~~~~~~vvvvE~~~-~gg~g~~v 496 (563)
+.+++|... -.+.+++ |++.|| ++++|.+.|+-| |. +.+.+ ++-..-|.+|..+. +.+-|+.|
T Consensus 9 vf~t~G~Ge~~t~L~aFd~A--L~dAgI~~~NLV~vSSIlP-p~~~~V~~e~gl~k-l~pG~iv~~V~Ar~~S~~~G~~i 84 (163)
T COG1945 9 VFFTSGVGEGDTELNAFDAA--LLDAGIENFNLVPVSSILP-PNCEIVDPEDGLPK-LPPGAILFCVMARGTSNEPGRTI 84 (163)
T ss_pred EEEEeccccCCchhHhHHHH--HHhCCCcccceEEEecccC-CcccccchhhcCCc-CCCCcEEeEEEeecccCCCCcee
Confidence 456666654 2344554 788888 599999999999 32 22333 33345666777754 55555555
Q ss_pred HHHH
Q 008493 497 VQFL 500 (563)
Q Consensus 497 ~~~l 500 (563)
++.+
T Consensus 85 saai 88 (163)
T COG1945 85 SAAI 88 (163)
T ss_pred eeee
Confidence 5544
No 339
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=42.00 E-value=37 Score=29.75 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=53.7
Q ss_pred EEEEEechhH-HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCC
Q 008493 429 VALLGYGTAV-QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 507 (563)
Q Consensus 429 v~iv~~G~~~-~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~ 507 (563)
+.+.+.|... ..-..|++.|++.|+++.--..+. ++.+ .+...+.||+++++.. .+.. ..+
T Consensus 27 ~~v~SaG~~~~~~~~~a~~~l~e~Gid~~~~~~~~---l~~~----~~~~~D~vitm~~~~~---------~~~~--~~p 88 (129)
T TIGR02691 27 WEVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDL---IDLD----ILNKADLVVTLCGDAR---------DKCP--ATP 88 (129)
T ss_pred EEEEcCCCCCCCcCHHHHHHHHHcCCCcCCccccc---CChh----hcccCCEEEEeCchhc---------cCCC--ccC
Confidence 4444444321 223456677888898764322322 2222 2346789999975421 0100 001
Q ss_pred CCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHH
Q 008493 508 GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 547 (563)
Q Consensus 508 ~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~ 547 (563)
.........++|.++..|+.++.++.|.-.-+.|..++..
T Consensus 89 ~~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~I~~~v~~ 128 (129)
T TIGR02691 89 PHVKREHWGLDDPARAEGTEEEKWAVFRRVRDEIKERVKD 128 (129)
T ss_pred CCCeEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1122234466777777788877777666666666666553
No 340
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=40.96 E-value=2.6e+02 Score=25.41 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHhhhhcCCCCcEEEEE--cccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 30 STSISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 30 G~~l~~a~G~A~A~~~~~~~~~vv~~~--GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
..+.-+|.|.+.+. +..+|++ |=|..+ ..-++..|...+.|+++|.-+..
T Consensus 45 ~~A~~mA~gyar~t------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 45 LNAGYAADGYARVK------GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHHHhh------CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 33455666666652 3555555 444443 34678888778899999996654
No 341
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=40.53 E-value=2.5e+02 Score=29.92 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
++.+++|+++| ..++.+.+-=.++. ..+|.+..|+..++|+++++-+-+
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~ 116 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRA 116 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccc
Confidence 57888999887 56678777777777 677999999999999877776555
No 342
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=40.44 E-value=2.2e+02 Score=31.93 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=50.2
Q ss_pred hhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHH
Q 008493 65 QAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 144 (563)
Q Consensus 65 ~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (563)
-..-|+.+++..++|+++|...+. +.+ ..||++.- +.+.++.
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDS-Igv---GEDGPTHq---------------------------------PiEqLa~- 481 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDS-IGV---GEDGPTHQ---------------------------------PVEQLAS- 481 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCc-eec---CCCCCCCC---------------------------------cHHHHHH-
Confidence 445689999999999999998886 333 12444320 1122222
Q ss_pred HHHHHhccccCCCcchhhh-cCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEE
Q 008493 145 VDEYARGMISGSGSTLFEE-LGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 201 (563)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~-~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~ 201 (563)
+++ -++.++++ .|..+...+++.|.+. .++|++|...
T Consensus 482 ----------------LRaiPN~~V~RP---aD~~Et~~aw~~Al~~-~~gPt~Lilt 519 (663)
T COG0021 482 ----------------LRAIPNLSVIRP---ADANETAAAWKYALER-KDGPTALILT 519 (663)
T ss_pred ----------------hhccCCceeEec---CChHHHHHHHHHHHhc-CCCCeEEEEe
Confidence 222 26677888 5556667778877762 5789987765
No 343
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=40.36 E-value=51 Score=27.77 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 479 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~ 479 (563)
....|..|.+.|++.|+...++++.. .|++.+.+.+.++..+
T Consensus 8 ~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 8 NCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 34678999999999999999999974 6778888888876543
No 344
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=40.27 E-value=1.1e+02 Score=25.26 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=44.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc----cCCEEEEEeCCCCCChHHH
Q 008493 427 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 427 ~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~----~~~~vvvvE~~~~gg~g~~ 495 (563)
.+++|.+. +..+.|..|.+.|.+.|++..++++.. .|--.+....+.+ .+=+.|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 35777776 567889999999999999999999873 2311222222222 2336677777667888654
No 345
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=39.87 E-value=1.9e+02 Score=28.49 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=34.5
Q ss_pred HHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCC-CCCCce-EEeecCCcccCCCCHHHH
Q 008493 469 ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL-DGTVKW-RPLVLPDRYIDHGSPADQ 530 (563)
Q Consensus 469 ~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~l 530 (563)
+.+..+.+....+|++.... --..+++.|.+.++. +.++-+ .+++.++.-...++.+++
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~---~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l 215 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ---RIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADI 215 (257)
T ss_pred hhHHHHhcCCCeEEEECCch---hHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHH
Confidence 45666666666777777432 246677788777653 112222 366777766555555554
No 346
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=39.84 E-value=1.7e+02 Score=30.99 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEe
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 85 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~ 85 (563)
++++++|+++| ..++.+.+-=.++. ..+|.|..|+..++|+++++-
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~ 107 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIG 107 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEEC
Confidence 57888999887 56677777777776 677999999999999988873
No 347
>PRK10853 putative reductase; Provisional
Probab=39.48 E-value=48 Score=28.64 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 438 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
...|++|.+.|++.|+..+++|+.. .|++.+.+.+.++..
T Consensus 10 C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 10 CDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 4678899999999999999999975 677888888777543
No 348
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=39.07 E-value=1.5e+02 Score=22.37 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=38.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChH
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFG 493 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g 493 (563)
++|.+ -+....|..|.+.|.+.|++...+++..- + ..+.+.... ..+=++|+++....||..
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~~igg~~ 65 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGELIGGSD 65 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCEEEeCHH
Confidence 44444 36667889999999999999999988532 2 223333322 122355666655567753
No 349
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=38.72 E-value=78 Score=24.17 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCC-CCCChH
Q 008493 438 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFG 493 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~-~~gg~g 493 (563)
...|..|.+.|++.|+..+.+++.. .|-..+.+.+.-..+=+++++++. ..+|+-
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 4788899999999999999999873 221222222221122356666543 345553
No 350
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.82 E-value=1.5e+02 Score=31.29 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.4
Q ss_pred EechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEE
Q 008493 433 GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 483 (563)
Q Consensus 433 ~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvv 483 (563)
.||+.-..+...++-|.+.|++|.++++.+- +.+.|.+.+...+.+++
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 5677778888888999999999999999876 55667666655665554
No 351
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=36.33 E-value=4.6e+02 Score=27.72 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccCCC-CeEEEEeCCCCCCCCCCCCC---Chhhh-hhhhcCCCcEEEec
Q 008493 317 QRAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC---GSFDV-TFMACLPNMVVMAP 371 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~-pv~~v~~~~G~~g~~G~tH~---~~~d~-~~~~~~p~~~v~~P 371 (563)
-..+|.+ +.++..++ +++++.+..+. ..+|++.. ..+++ .-++. -||.|+.-
T Consensus 162 G~vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~A-fGW~vi~V 218 (386)
T cd02017 162 PESLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRG-AGWNVIKV 218 (386)
T ss_pred HHHHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHh-cCCEEEEE
Confidence 3567776 67787776 67777666554 33444433 23343 24565 48988765
No 352
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=35.90 E-value=3.7e+02 Score=27.56 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC--CEEEEEeCCCCCChHHHHHH
Q 008493 421 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH--EVLITVEEGSIGGFGSHVVQ 498 (563)
Q Consensus 421 ~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~--~~vvvvE~~~~gg~g~~v~~ 498 (563)
..+.+|..+.++..|.-.. .|++.++..|..|.++-...=.-.+.|.|.+-+..+ +.|.+.....+.|.-+.+.+
T Consensus 87 N~lePgd~vLv~~~G~wg~---ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQ---RAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred hhcCCCCeEEEEEechHHH---HHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 3466788899999998766 455666677999999977666667788888765433 33433333345666655444
Q ss_pred HHHHcCCCCCCC-----ceEEeecC----Ccc----cCCCCHHHHHHHcCCCHHHHHHHHHHHhcccc
Q 008493 499 FLAQDGLLDGTV-----KWRPLVLP----DRY----IDHGSPADQLAQAGLTPSHIAATVFNILGQTR 553 (563)
Q Consensus 499 ~l~~~~~~~~~~-----~~~~~~~~----~~~----~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~ 553 (563)
...+-+.. .++ -+.++|.. |+| ..+|+++.+-...|+++-.-.+++.+-+...|
T Consensus 164 ~~g~lc~k-~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK 230 (385)
T KOG2862|consen 164 ISGELCHK-HEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRK 230 (385)
T ss_pred HHHHHhhc-CCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhcc
Confidence 44332210 011 11233321 222 24678777766678777555555555554443
No 353
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=35.66 E-value=1.7e+02 Score=23.15 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=36.5
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHH-hccCCEEEEEeCC
Q 008493 428 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL-AKSHEVLITVEEG 487 (563)
Q Consensus 428 dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~-~~~~~~vvvvE~~ 487 (563)
++.|+..+. ....+++.+..|++.|+.+.+-.. . +.+..+ +... ....+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~-~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR-E-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC-C-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 467777664 457888888999999998887442 2 343433 3332 3445677777764
No 354
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=35.42 E-value=1.6e+02 Score=25.53 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=46.1
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccc---cCceEEEeeCCcEEEEEechhHHHHHH
Q 008493 367 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE---VGKGRILIEGERVALLGYGTAVQSCLA 443 (563)
Q Consensus 367 ~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~---~~k~~~l~~g~dv~iv~~G~~~~~~~~ 443 (563)
.|+.|.+.+|+..+++.|.+ ...|+.++-............ ...-.. +.+...+.+....+.|..|.......+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 48999999999999999955 678888876554432211100 011111 222122333456778888888876665
Q ss_pred HH
Q 008493 444 AS 445 (563)
Q Consensus 444 Aa 445 (563)
.+
T Consensus 80 ~l 81 (139)
T PF01565_consen 80 AL 81 (139)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 355
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=34.56 E-value=75 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=34.9
Q ss_pred EEech-hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc
Q 008493 432 LGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 477 (563)
Q Consensus 432 v~~G~-~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~ 477 (563)
.-||. ....|++|.+.|+++|+..+++|+.. .|++.+.+...++.
T Consensus 4 ~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 4 IFYEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 33554 35789999999999999999999874 57788877766654
No 356
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.40 E-value=1.1e+02 Score=28.12 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=36.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeC
Q 008493 425 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 486 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~ 486 (563)
+|+.++||+.|.++... +++.|.++|.++.+++-. .+.+.+.++..+-||+.-.
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEEcCC
Confidence 35679999999886542 355577788888777743 2456667777776665543
No 357
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=34.40 E-value=2.6e+02 Score=29.20 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=23.6
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 199 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~ 199 (563)
|+.++.+ .|..++..+++.+.+ .++|++|.
T Consensus 173 n~~V~~P---sd~~e~~~~l~~a~~--~~~P~~i~ 202 (355)
T PTZ00182 173 GLKVVAP---SDPEDAKGLLKAAIR--DPNPVVFF 202 (355)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 5666656 788899999998886 57899875
No 358
>PRK10026 arsenate reductase; Provisional
Probab=34.39 E-value=71 Score=28.59 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|++|.+.|++.|+...++++.. .|++.+.+...++..
T Consensus 11 ~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 11 ACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 45789999999999999999999975 677888887776643
No 359
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=34.33 E-value=1.5e+02 Score=26.48 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=36.7
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCC--ceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC
Q 008493 429 VALLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 429 v~iv~~G~~~----~~~~~Aa~~L~~~Gi--~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
++|+++|+.. .....+++.|++... .+++++..+.-| +.+ ..+..++++|++|...
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~~---~l~-~~l~~~d~vIiVDA~~ 62 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAGM---EVM-FRARGAKQLIIIDASS 62 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCHH---HHH-HHhcCCCEEEEEEeCC
Confidence 4678888866 355667777765433 378888877643 333 3345678888888743
No 360
>PHA03050 glutaredoxin; Provisional
Probab=34.32 E-value=1.5e+02 Score=24.97 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=42.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCC---ceEEeeccccccCcHH---HHHHHh-ccCCEEEEEeCCCCCChHHHHH
Q 008493 427 ERVALLGYGTAVQSCLAASALLESNGL---RLTVADARFCKPLDHA---LIRSLA-KSHEVLITVEEGSIGGFGSHVV 497 (563)
Q Consensus 427 ~dv~iv~~G~~~~~~~~Aa~~L~~~Gi---~v~vi~~~~l~Pf~~~---~i~~~~-~~~~~vvvvE~~~~gg~g~~v~ 497 (563)
..++|.+... ...|..|.+.|++.|+ ..+++++....+ ..+ .+.+.- +.+=+.|++.....||+....+
T Consensus 13 ~~V~vys~~~-CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFT-CPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 4577776544 5678889999998898 788888874322 222 233322 2233566666655788865443
No 361
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.90 E-value=3.1e+02 Score=26.64 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCCCeeEEee-chhh-H--HHHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC--Chhhhh-hhhcCC
Q 008493 293 AVTFAAGLACEGLKPFCAI-YSSF-M--QRAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDVT-FMACLP 364 (563)
Q Consensus 293 ~~~~a~G~a~~G~~~~~~~-~~~f-~--~~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~--~~~d~~-~~~~~p 364 (563)
++|||.|+=+.|..-.++. .++. + -..||.+ +.++..++. ++.+.+.-.. --+|.|.- ..+++. -+.+ -
T Consensus 128 avGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAa-m~Aah~~L~NLiaivD~N~~-QldG~t~~i~~~~pL~~k~eA-F 204 (243)
T COG3959 128 AVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAA-MTAAHYKLDNLIAIVDRNKL-QLDGETEEIMPKEPLADKWEA-F 204 (243)
T ss_pred HHHHHHHHhhcCCCceEEEEecCcccccccHHHHH-HHHHHhccCcEEEEEecCCc-ccCCchhhccCcchhHHHHHh-c
Confidence 4566666666775444443 3443 4 2467777 567777775 5555454443 33454432 222221 2333 3
Q ss_pred CcEEEec--CCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 365 NMVVMAP--SDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 365 ~~~v~~P--~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
||.|+.- .|-+|....+.++-...++|.+|...
T Consensus 205 Gw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~ 239 (243)
T COG3959 205 GWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAK 239 (243)
T ss_pred CceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 7888554 57888888888885544589888753
No 362
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=33.17 E-value=70 Score=30.15 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred cHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCce---EEeecCCcccCCCCHHH
Q 008493 467 DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKW---RPLVLPDRYIDHGSPAD 529 (563)
Q Consensus 467 ~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~ 529 (563)
+...+.++.+..+.+++.+.... ...+++.|.+. +.....++ .++|.++.....++..+
T Consensus 147 ~~~~l~~~~~~~~~~vil~~~~~---~~~i~~~L~~~-~~~~~~~v~v~~~lg~~~E~i~~~tl~e 208 (210)
T PF00590_consen 147 REKLLENLLANGDTLVILTDPRR---LAEIAELLLER-LYPPDTPVAVGERLGYPDERIFRGTLEE 208 (210)
T ss_dssp HHHHHHHHHTTTSEEEEEESGCC---HHHHHHHHHHH-SHTTTSEEEEEESTTSTTEEEEEEEHHH
T ss_pred hHHHHHHHHhCCCEEEEEccCch---HHHHHHHHHhh-CCCCCcEEEHHHhcCCCCCEEEEeEHHH
Confidence 34456666677789999987652 45566666554 10111222 24555655555555444
No 363
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=32.89 E-value=56 Score=27.84 Aligned_cols=42 Identities=33% Similarity=0.581 Sum_probs=22.6
Q ss_pred hhhcCceEee-ccCCCCH-HHHHHHHHHHhccCCCCcEEEEEEec
Q 008493 161 FEELGLYYIG-PVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 161 ~~~~G~~~~~-~~dG~d~-~~l~~a~~~a~~~~~~~P~~I~v~t~ 203 (563)
+++.|+.|+. ++.+.++ .+-.+++.++.+. .++|++++|+|=
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~sG 96 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRSG 96 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SCS
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 7889987643 4554433 3344455555542 578999999863
No 364
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=32.73 E-value=1.6e+02 Score=31.02 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=55.3
Q ss_pred EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC---CEEEEEeCCCCCCh---HH
Q 008493 421 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGSIGGF---GS 494 (563)
Q Consensus 421 ~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~---~~vvvvE~~~~gg~---g~ 494 (563)
.++.+|.++.++..|.--..-.+-+ +..|.++.+++..+=.|++-+.|.+.+++. +.|.++..-.+.|+ -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia---~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIA---ERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHH---HHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 3456788899999998776555544 445899999999999999999999988744 33333332234455 34
Q ss_pred HHHHHHHHcC
Q 008493 495 HVVQFLAQDG 504 (563)
Q Consensus 495 ~v~~~l~~~~ 504 (563)
+|+..+.+.+
T Consensus 152 ~I~~~~k~~g 161 (383)
T COG0075 152 EIAKAAKEHG 161 (383)
T ss_pred HHHHHHHHcC
Confidence 4555555543
No 365
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.70 E-value=1.3e+02 Score=28.49 Aligned_cols=96 Identities=20% Similarity=0.361 Sum_probs=54.3
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCcccccHHHHHHHHHHH
Q 008493 172 VDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIA 251 (563)
Q Consensus 172 ~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~~~~a~~~~l~~ 251 (563)
-.|.|++.+.++++.-. ....+..+.+.+-.-+.. + -.+-||.+.+-.. .+...-++++-++|.+
T Consensus 9 G~GSNlqaiida~~~~~----~~a~i~~Visd~~~A~~l-e--rA~~~gIpt~~~~--------~k~~~~r~~~d~~l~~ 73 (200)
T COG0299 9 GNGSNLQAIIDAIKGGK----LDAEIVAVISDKADAYAL-E--RAAKAGIPTVVLD--------RKEFPSREAFDRALVE 73 (200)
T ss_pred CCcccHHHHHHHHhcCC----CCcEEEEEEeCCCCCHHH-H--HHHHcCCCEEEec--------cccCCCHHHHHHHHHH
Confidence 36789999888776221 123444455554322211 1 0122455432100 1112237788888888
Q ss_pred HHhc-CCCEEEEecCCCCCcCh--HHHHHhCCCCeeec
Q 008493 252 EAEV-DKDVVAIHAAMGGGTGL--NLFLRRFPTRCFDV 286 (563)
Q Consensus 252 ~~~~-~~~v~~~~~D~~~s~~~--~~~~~~~p~r~i~~ 286 (563)
.++. .++++++. |...+ ..|.+.|++|.+|.
T Consensus 74 ~l~~~~~dlvvLA----GyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 74 ALDEYGPDLVVLA----GYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred HHHhcCCCEEEEc----chHHHcCHHHHHHhhcceEec
Confidence 7765 68888864 33333 57889999999997
No 366
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=32.50 E-value=1.8e+02 Score=27.36 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHh-CCCceEEeeccccccCcH--------------HHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 436 TAVQSCLAASALLES-NGLRLTVADARFCKPLDH--------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~-~Gi~v~vi~~~~l~Pf~~--------------~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
..-..+..+++.+++ .|+++++++++...|-+. .. .+.+..++.||+.=..+.|++...+..++
T Consensus 14 ~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsPty~g~~~~~lk~fl 92 (200)
T PRK03767 14 HIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFGTPTRFGNMAGQMRNFL 92 (200)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEEecccCCCchHHHHHHH
Confidence 344556666777877 899999999975433111 11 23445567666655445788888888877
Q ss_pred HHc
Q 008493 501 AQD 503 (563)
Q Consensus 501 ~~~ 503 (563)
..-
T Consensus 93 d~~ 95 (200)
T PRK03767 93 DQT 95 (200)
T ss_pred HHh
Confidence 654
No 367
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.14 E-value=80 Score=26.59 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc
Q 008493 438 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 477 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~ 477 (563)
...|..|.+.|++.|+++..+|+. =.|++.+.+.+.++.
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~-k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYK-KEPLSREELRELLSK 44 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETT-TS---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEeehhh-hCCCCHHHHHHHHHH
Confidence 467899999999999999999997 456688888776644
No 368
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.72 E-value=3e+02 Score=24.87 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=36.8
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC----CEEEEEeCCCCCChHHHHHHH
Q 008493 428 RVALLGYG-TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQF 499 (563)
Q Consensus 428 dv~iv~~G-~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~----~~vvvvE~~~~gg~g~~v~~~ 499 (563)
+|.||+-| +-...+.++.+.|++-|+..++ .+.+.+--+.+ +.++++.. -.|++.=.+..+.+..-++..
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~ 76 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGMSAALPGVVASL 76 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEESS--HHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCCcccchhhheec
Confidence 34544433 3578899999999999988764 55555554443 33333222 124443334456666555543
No 369
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.71 E-value=85 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|++|.+.|++.|+++..+|+.. .|+..+.+.++++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 45788999999999999999999874 677888888777654
No 370
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=31.62 E-value=1.6e+02 Score=26.11 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCc--eEEeeccccccCcHHHHHHHhccCCEEEEEeCCC
Q 008493 431 LLGYGTAV----QSCLAASALLESNGLR--LTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 431 iv~~G~~~----~~~~~Aa~~L~~~Gi~--v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
|++.|+.. .....+++.|+++... +.++|..+. ..+.+.+.++.+++||+|+...
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~~ 62 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAVP 62 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEecc
Confidence 56777765 3556677777665433 778887654 2333434455688888888753
No 371
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=31.58 E-value=86 Score=26.62 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|++|.+.|++.|+++..+|+.. .|++.+.+.+.++..
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 45788999999999999999999864 677888787776544
No 372
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=31.54 E-value=2.3e+02 Score=28.25 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCCC---eEEEEeCCC--C-CCC-CCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---c
Q 008493 318 RAYDQVVHDVDLQKLP---VRFAMDRAG--L-VGA-DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---I 387 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p---v~~v~~~~G--~-~g~-~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~ 387 (563)
..+|.+ |.+...++| +++++..-+ + +.. ...+-....|.+-.-.+|.+ .+.=.|+..+..+++.|++ .
T Consensus 157 ~~~Eal-NlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 157 VVYETL-NLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred hHHHHH-HHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHh
Confidence 345555 888899998 888875444 3 211 11111223444433456766 4588899999999888876 3
Q ss_pred CCCCEEEEe
Q 008493 388 DDRPSCFRY 396 (563)
Q Consensus 388 ~~~P~~i~~ 396 (563)
.++|++|-+
T Consensus 235 g~gp~lIe~ 243 (265)
T cd02016 235 FKKDVVIDL 243 (265)
T ss_pred cCCCEEEEE
Confidence 568988855
No 373
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.22 E-value=89 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecc
Q 008493 437 AVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
.++.++.|-+.|++.|++++++-+|
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 3566788888899999999998654
No 374
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.21 E-value=2.1e+02 Score=22.75 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=37.0
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCC
Q 008493 428 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 428 dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
.++|+..+. ....+++.++.|++.|+++.+ +... +.+....-.....+.+.++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777664 457888889999999999987 4332 333333222233556777777754
No 375
>TIGR03586 PseI pseudaminic acid synthase.
Probab=30.84 E-value=4.9e+02 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=44.6
Q ss_pred EEEEEech-hHHHHHHHHHHHHhCCC-ceEEeeccccccCcHH-----HHHHHhccCCEEEEEeCCCCCChHHHHHHH
Q 008493 429 VALLGYGT-AVQSCLAASALLESNGL-RLTVADARFCKPLDHA-----LIRSLAKSHEVLITVEEGSIGGFGSHVVQF 499 (563)
Q Consensus 429 v~iv~~G~-~~~~~~~Aa~~L~~~Gi-~v~vi~~~~l~Pf~~~-----~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~ 499 (563)
-+|+++|. ...+...|++.+++.|. ++-++++.+-+|-+.+ .|..+-+.++..|-+-+|. .|..--+++.
T Consensus 136 PvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt-~G~~~~~aAv 212 (327)
T TIGR03586 136 PIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT-LGILAPVAAV 212 (327)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC-CchHHHHHHH
Confidence 45677775 45888999999988887 6889998888886554 3333333455444244565 4454444443
No 376
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=30.70 E-value=2.4e+02 Score=27.28 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccccCcH--------HHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 439 QSCLAASALLESNGLRLTVADARFCKPLDH--------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~--------~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
..+..+++.+.++|..++++++.-+-.++. ..+++.++..+.+|++---+.+++...+.+.+
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKNai 113 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHHHH
Confidence 344455566776799999999875432221 23455566667666555444577777776655
No 377
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=30.50 E-value=1.2e+02 Score=26.65 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEee-----
Q 008493 442 LAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLV----- 516 (563)
Q Consensus 442 ~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~----- 516 (563)
..|.+.|++.|++.+- .+-+++... .++..+.||++++... ..+.... .....++..++
T Consensus 48 ~~a~~~l~~~Gid~s~---h~s~~l~~~----~~~~aDlIi~m~~~~~--------~~~~~~~-~~~~~~v~~~~~~~~~ 111 (141)
T cd00115 48 PRAIAVLAEHGIDISG---HRARQLTED----DFDEFDLIITMDESNL--------AELLEPP-PGGRAKVELLGEYAGD 111 (141)
T ss_pred HHHHHHHHHcCCCccc---CeeeeCCHH----HHHhCCEEEEECHHHH--------HHHHhcC-CCCcceEEeHhhhCcC
Confidence 4556667788888643 333444443 2345789999987531 2221111 11123455566
Q ss_pred --cCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 517 --LPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 517 --~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
++|.|+.+ ++.|.-..+.|.+++++++
T Consensus 112 ~~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 112 REVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 66666543 3344445667777776665
No 378
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=30.32 E-value=1.3e+02 Score=27.85 Aligned_cols=121 Identities=20% Similarity=0.176 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccc----c----CceEEEeeCCcEEEEEechhHHHHHHHH
Q 008493 374 EAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE----V----GKGRILIEGERVALLGYGTAVQSCLAAS 445 (563)
Q Consensus 374 ~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~----~----~k~~~l~~g~dv~iv~~G~~~~~~~~Aa 445 (563)
-+|+..||.+|+- .++-+|+.--.. +............+++ + ++...+.+-.+|.|++-.+.-..+.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~E-m~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGE-MEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GG-GGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecCh-HHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3688899999976 578888754322 1111000000001111 1 1111233344788999888888999999
Q ss_pred HHHHhCCCceEEeeccccccCcHHHHHHH------hccCCEEEEEeCCCCCChHHHHHHH
Q 008493 446 ALLESNGLRLTVADARFCKPLDHALIRSL------AKSHEVLITVEEGSIGGFGSHVVQF 499 (563)
Q Consensus 446 ~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~------~~~~~~vvvvE~~~~gg~g~~v~~~ 499 (563)
++|.++|+.+-+|+.. .+ +...+.+. ++..+.+|--|++..-|+-+.++..
T Consensus 102 ~~L~~~gi~~v~Vs~~--~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~l 158 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSPN--KP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAAL 158 (172)
T ss_dssp HHHHHHT--EEEEE-S--S----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHHH
T ss_pred HHHHHCCCCEEEEEec--CC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHHH
Confidence 9999999999888821 22 11222221 1233667777776655666555543
No 379
>PRK10329 glutaredoxin-like protein; Provisional
Probab=30.30 E-value=1.9e+02 Score=22.86 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc---cCCEEEEEeCCCCCChH
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFG 493 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~---~~~~vvvvE~~~~gg~g 493 (563)
++|.+. .....|..|.+.|++.||..+.+++.. +.+....+.. ..=+++++++....||.
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCC
Confidence 455543 344788889899999999999999973 2222222211 12255666664445554
No 380
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=30.25 E-value=1.6e+02 Score=32.85 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
++.+++|+++| ..++.+.+-=.++. ..+|.+..|+..++|+++++-+..
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~ 297 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG 297 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC
Confidence 57888999887 56677777777777 677999999999999988886665
No 381
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=30.11 E-value=1.2e+02 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeC
Q 008493 435 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 486 (563)
Q Consensus 435 G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~ 486 (563)
|..-..|...++.|++.|+++.++++....+ . + +.+...+.++++=.
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~~---~-~-~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFDD---S-P-SDLSEYDLLIFGVS 54 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSCH---H-H-HHHCTTSEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhhh---h-h-hhhhhhceeeEeec
Confidence 3344556666677778899999999976643 2 2 33444555555443
No 382
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=29.37 E-value=1.4e+02 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCC
Q 008493 442 LAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 442 ~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
-.|++.|++.||+++- .. .++..+. +...+.||++++.
T Consensus 44 ~~a~~~l~~~Gid~~~--~~--~~l~~~~----~~~~DlIv~m~~~ 81 (140)
T smart00226 44 PRAVEVLKEHGIALSH--HA--SQLTSSD----FKNADLVLAMDHS 81 (140)
T ss_pred HHHHHHHHHcCcCccc--ee--ccCCHHH----HHhCCEEEEeCHH
Confidence 4566778888998652 22 2555443 3467899999874
No 383
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=29.23 E-value=2.2e+02 Score=22.42 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=41.7
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----CCCceEEeeccccccCcHHHHHHHhc---cCCEEEEEeCCCCCChHHHHHHHH
Q 008493 429 VALLGYGTAVQSCLAASALLES-----NGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~-----~Gi~v~vi~~~~l~Pf~~~~i~~~~~---~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
++|.+. +....|..|.+.|++ .|+....+|+.. .+...+.+.+... .+=+.|+++....||+. .+.+++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~-~~~~~~ 79 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCT-DFEAYV 79 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHH-HHHHHH
Confidence 344432 345677788887777 799999999874 2222344544433 22356667765567774 444444
Q ss_pred HH
Q 008493 501 AQ 502 (563)
Q Consensus 501 ~~ 502 (563)
.+
T Consensus 80 ~~ 81 (85)
T PRK11200 80 KE 81 (85)
T ss_pred HH
Confidence 43
No 384
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=28.83 E-value=62 Score=35.75 Aligned_cols=63 Identities=35% Similarity=0.361 Sum_probs=48.1
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhh
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
+|+..+.-....++.+|..+++..++|........++++++...- |+++++.+.++++++..+
T Consensus 229 ~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~ 291 (632)
T KOG0523|consen 229 VKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKP 291 (632)
T ss_pred ccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcc
Confidence 355555555667899999999988999887777777777664334 999999999999886443
No 385
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=28.52 E-value=2.2e+02 Score=27.00 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhC---CCceEEeeccccccCcHHHHHHHhccCCEEEEEeC
Q 008493 427 ERVALLGYGTAV----QSCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 486 (563)
Q Consensus 427 ~dv~iv~~G~~~----~~~~~Aa~~L~~~---Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~ 486 (563)
.+++|++.|+.+ ..-..+++.|++. .-.+.++|..+.-+ +. ...+...+.+|++|.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~---~l-l~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL---NL-LGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH---HH-HHHHcCCCEEEEEEC
Confidence 368899999877 3556677777653 22488899887643 32 344456777877776
No 386
>PRK10824 glutaredoxin-4; Provisional
Probab=28.29 E-value=1.9e+02 Score=24.84 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=42.8
Q ss_pred CcEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHHHH
Q 008493 427 ERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVV 497 (563)
Q Consensus 427 ~dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~v~ 497 (563)
.+|+|++-|+ ....|..|.+.|.+.|++..++++-. .|=-.+.+.+.. ..+=+-|.|.....||.....+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 4678888884 57889999999999999998888752 110112222221 1222445566555688754433
No 387
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=28.11 E-value=2.4e+02 Score=26.68 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred echhHHHHHHHHHHHHhCCCceEEeecccc--ccC----------------c-HHHHHHHhccCCEEEEEeCCCCCChHH
Q 008493 434 YGTAVQSCLAASALLESNGLRLTVADARFC--KPL----------------D-HALIRSLAKSHEVLITVEEGSIGGFGS 494 (563)
Q Consensus 434 ~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l--~Pf----------------~-~~~i~~~~~~~~~vvvvE~~~~gg~g~ 494 (563)
.|.+...+..+++.+++.|+++++++++-. .|- | .+.+.+.+..++-+|+-=..+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 477777888888889888999999999854 331 2 245555566677777766556799999
Q ss_pred HHHHHHHH
Q 008493 495 HVVQFLAQ 502 (563)
Q Consensus 495 ~v~~~l~~ 502 (563)
.+..++-.
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 88888765
No 388
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=27.92 E-value=2.5e+02 Score=27.62 Aligned_cols=72 Identities=26% Similarity=0.319 Sum_probs=44.7
Q ss_pred ccCceEEEe-eCCcEEEEEechhHHHHHHHHHHHHhCC--CceEEeec-ccccc-CcHHHHHHHhccCCEEEEEeCCC
Q 008493 416 EVGKGRILI-EGERVALLGYGTAVQSCLAASALLESNG--LRLTVADA-RFCKP-LDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 416 ~~~k~~~l~-~g~dv~iv~~G~~~~~~~~Aa~~L~~~G--i~v~vi~~-~~l~P-f~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
|+|++.... .++.+++|+-|..+...+..++.+.+.| -++.++-- ++-.- +..+.+.+...+ ..+++++++.
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 344443333 2445999999999999999999998878 56665542 22221 333455555443 5667777554
No 389
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.71 E-value=1.1e+02 Score=25.32 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|..|.+.|++.|++...+++.. .|...+.+.+.+...
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~ 48 (105)
T cd02977 8 NCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKL 48 (105)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhc
Confidence 45789999999999999999999873 567778787776543
No 390
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=27.31 E-value=2.4e+02 Score=25.09 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=35.9
Q ss_pred EEEEEechhH----HHHHHHHHHHHhC-C--CceEEeeccccccCcHHHHHHHhccCCEEEEEeCC
Q 008493 429 VALLGYGTAV----QSCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 429 v~iv~~G~~~----~~~~~Aa~~L~~~-G--i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
++|+++|+.. ..-..+++.|++. + -.+++++..+.-+ +.+ ..+..++++|+||.-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~~---~l~-~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLGL---ELL-PYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCHH---HHH-HHHhcCCEEEEEEcc
Confidence 3678888876 3455667777654 3 3578888876532 333 344567889998874
No 391
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=27.25 E-value=1.5e+02 Score=23.50 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=37.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcH-HHHHHHh-ccCCEEEEEeCCCCCC
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH-ALIRSLA-KSHEVLITVEEGSIGG 491 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~-~~i~~~~-~~~~~vvvvE~~~~gg 491 (563)
++|.+.- ....|..|.+.|.+.|++...+++..-.+-.. +.+++.- ..+=++|++.+...||
T Consensus 3 v~iyt~~-~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTKP-GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEECC-CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 3444432 36788999999999999999999875554111 2233321 2334677777744443
No 392
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=27.05 E-value=1.3e+02 Score=26.89 Aligned_cols=49 Identities=4% Similarity=0.124 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhh-cccCCCEEEEEeCCCC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNA-GYLDSDMIVILNDNKQ 89 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a-~~~~~pli~iv~nN~~ 89 (563)
++++.|+++|- ++...++-..++.. ..-|+..- ..+++|+++++..-|.
T Consensus 55 ~GIcAGa~lAG------kk~ailmQnsGlGN--siNal~SL~~ty~iPl~ml~ShRG~ 104 (172)
T COG4032 55 VGICAGAYLAG------KKPAILMQNSGLGN--SINALASLYVTYKIPLLMLASHRGV 104 (172)
T ss_pred eeeehhhhhcC------CCcEEEEeccCcch--HHHHHHHHHHHhccchhhhhhccch
Confidence 35678888883 44555555555542 22233222 4578999999987774
No 393
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.88 E-value=6.9e+02 Score=28.03 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcc
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVS 91 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s 91 (563)
++..|.|+|.+- -++||++-. .|.+=..-+-+-..+..++|++|.|+-.+-..
T Consensus 370 AVT~AAGlA~~G-----~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG 422 (627)
T COG1154 370 AVTFAAGLAAEG-----MKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVG 422 (627)
T ss_pred HHHHHHHHHhCC-----CCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccC
Confidence 577777777653 367777752 33221222334455677899999999888433
No 394
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=26.83 E-value=3.2e+02 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccccC----------cHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 439 QSCLAASALLESNGLRLTVADARFCKPL----------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf----------~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
..+..+++.|++.|.+++++++..+.+- +.+.+.+.++..+.+|+.=--+.+++...+..++
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHH
Confidence 3444556678888999999998765431 1223445556677777776655677777777666
No 395
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=26.75 E-value=1.2e+02 Score=27.82 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=34.5
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhCCC---ceEEeeccccccCcHHHHHHHhccCCEEEEEeC
Q 008493 427 ERVALLGYGTAV----QSCLAASALLESNGL---RLTVADARFCKPLDHALIRSLAKSHEVLITVEE 486 (563)
Q Consensus 427 ~dv~iv~~G~~~----~~~~~Aa~~L~~~Gi---~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~ 486 (563)
..++|++.|..+ ..-...+++|++... ++.|+|.-+.-|.-. ..+..++++|+||.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~l~----~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPNLL----GLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHHHH----HHhcCCCcEEEEEe
Confidence 357889999865 233445555655332 688999988765322 33445566777765
No 396
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=26.73 E-value=2.8e+02 Score=25.04 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=34.5
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhCCC-ceEEeeccccccCcHHHHHHHhc-cCCEEEEEeC
Q 008493 428 RVALLGYGTAV----QSCLAASALLESNGL-RLTVADARFCKPLDHALIRSLAK-SHEVLITVEE 486 (563)
Q Consensus 428 dv~iv~~G~~~----~~~~~Aa~~L~~~Gi-~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~ 486 (563)
+++|+++|... .....+++.|++... .+.+++..+ -|++. +..... +.+++|+||.
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~--~~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEND--IVAIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHH--HHHHHhcCCCEEEEEEC
Confidence 36788888876 455667777765422 478888887 34332 222211 3578888886
No 397
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=26.22 E-value=1.6e+02 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 438 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
...|..|.+.|++.||...+++... .|.+.+.+.+.++..
T Consensus 11 C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~ 50 (117)
T COG1393 11 CSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKL 50 (117)
T ss_pred ChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHc
Confidence 3589999999999999999998863 455777776666543
No 398
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=26.22 E-value=2.2e+02 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
++|+++|.... ..++.|++.+.++-+++..
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 46788887665 4455566677788888864
No 399
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=26.11 E-value=1.1e+02 Score=25.94 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 477 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~ 477 (563)
.....|..|.+.|++.|++...+++.. .|.+.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHH
Confidence 345789999999999999999999853 66677777776654
No 400
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=26.07 E-value=6.2e+02 Score=24.67 Aligned_cols=72 Identities=29% Similarity=0.356 Sum_probs=43.0
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhCCCceE-Eeeccc--cc-cCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 427 ERVALLGYGTA-VQSCLAASALLESNGLRLT-VADARF--CK-PLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 427 ~dv~iv~~G~~-~~~~~~Aa~~L~~~Gi~v~-vi~~~~--l~-Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
..+.+++.|.. +..+.||+..++..|+++. ++|+-- |. .|+ ..-+...+..+.+||+ .++.|-+.+-|+..+
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~-~l~r~~~~~~~~lIVv-AGMEGaLPsvvagLv 194 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLS-ALKRLKIEDADVLIVV-AGMEGALPSVVAGLV 194 (254)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhh-HHHHHHhhCCCeEEEE-cccccchHHHHHhcc
Confidence 35779999965 7888888888888888765 555431 11 121 1111223344555544 466777877776554
No 401
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=25.79 E-value=3.1e+02 Score=24.95 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=37.7
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhC-C--CceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC
Q 008493 428 RVALLGYGTAV----QSCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 428 dv~iv~~G~~~----~~~~~Aa~~L~~~-G--i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
+++|+++|+.. ..-..+++.|++. . -.+++++..+.-+ +. ...+..++.+|+|+...
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~~---~l-l~~l~~~d~vIiVDA~~ 65 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---EL-LGDMANRDHLIIADAIV 65 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccHH---HH-HHHHhCCCEEEEEEecC
Confidence 47899999977 3556777778653 3 2578888876642 32 23345678888888643
No 402
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.14 E-value=2.9e+02 Score=23.44 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=28.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEe
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 485 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE 485 (563)
++.|+..|.. +..+.+.+++.|++.-+|+-. | +....-.+..+.++.++
T Consensus 4 kvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~---~---d~~s~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 4 KVLIANRGEI---AVRIIRALRELGIETVAVNSN---P---DTVSTHVDMADEAYFEP 52 (110)
T ss_dssp EEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG---G---GTTGHHHHHSSEEEEEE
T ss_pred EEEEECCCHH---HHHHHHHHHHhCCcceeccCc---h---hcccccccccccceecC
Confidence 5677777777 445555567779998888764 2 22222233455666666
No 403
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=24.69 E-value=3.1e+02 Score=27.71 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=7.1
Q ss_pred HHHHhccCCEEEEEeC
Q 008493 471 IRSLAKSHEVLITVEE 486 (563)
Q Consensus 471 i~~~~~~~~~vvvvE~ 486 (563)
+.++......+|+.|.
T Consensus 156 L~~l~~~~~t~V~yes 171 (287)
T PRK14994 156 LKALEAEPRTLIFYES 171 (287)
T ss_pred HHHHhcCCCeEEEEEE
Confidence 3334433444555553
No 404
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=24.60 E-value=3.9e+02 Score=21.85 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEE
Q 008493 443 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 483 (563)
Q Consensus 443 ~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvv 483 (563)
+..+.++++|++++|...+ ...+.+....++-|++
T Consensus 18 ki~~~~~~~~~~~~v~~~~------~~~~~~~~~~~Diil~ 52 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVP------ESELEEYIDDADVVLL 52 (96)
T ss_pred HHHHHHHHCCCceEEEEec------HHHHHHhcCCCCEEEE
Confidence 3345567789998887764 4445555566664444
No 405
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=24.31 E-value=2.3e+02 Score=25.22 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=31.7
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCC--ceEEeeccccccCcHHHHHHHhc--cCCEEEEEeC
Q 008493 429 VALLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAK--SHEVLITVEE 486 (563)
Q Consensus 429 v~iv~~G~~~----~~~~~Aa~~L~~~Gi--~v~vi~~~~l~Pf~~~~i~~~~~--~~~~vvvvE~ 486 (563)
++|++.|+.. .....+++.|++... .+.+++..+. |++. + ..++ +++++|++|.
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~--~-~~~~~~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENF--T-VAIRELRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHH--H-HHHHhcCCCEEEEEEC
Confidence 3577888766 345566777765432 3667877765 4332 2 2222 4577777776
No 406
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=24.16 E-value=3.4e+02 Score=22.25 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=34.8
Q ss_pred EEEEEechhHHHHHHHHHHH----HhCCCceEEeeccc---cccCcHHHHHHHhccCCEEEEEeCC
Q 008493 429 VALLGYGTAVQSCLAASALL----ESNGLRLTVADARF---CKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L----~~~Gi~v~vi~~~~---l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
+.|+++|+...+..-|++.| ++.|+++.+---.. ..+++.+.+. ..+.||++=+.
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecCC
Confidence 46788888776665555544 45799888764444 5667665443 45677766554
No 407
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=23.87 E-value=6.4e+02 Score=29.90 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC--C-hhhh-hhhhcCCCcEEEec
Q 008493 318 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--G-SFDV-TFMACLPNMVVMAP 371 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~--~-~~d~-~~~~~~p~~~v~~P 371 (563)
..+|.+ ..++..++. ++++.+.-. ..-+|++.. . .+++ ..++. -||.|+.-
T Consensus 234 ~~wEA~-~~Aa~~kLdNLi~IvD~N~-~qlDG~t~~~~~~~e~l~~kf~a-~GW~vi~v 289 (889)
T TIGR03186 234 ESIGAL-SLAARERLDNLVFVINCNL-QRLDGPVRGNGRIIDELESQFAG-AGWNVIKV 289 (889)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEeCCC-CccCCccccccccchHHHHHHHh-CCCEEEEE
Confidence 567776 678888885 555555444 345677763 2 2333 35666 58988764
No 408
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=23.79 E-value=1.4e+02 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
.....|..|.+.|++.|+...++++.. .|++.+.+.+.++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 345788999999999999999999874 577888777776553
No 409
>PRK13683 hypothetical protein; Provisional
Probab=23.78 E-value=1.1e+02 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCc
Q 008493 174 GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 174 G~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
-.|.+.+++.+..|.+ ++.|.++|+.+.|-.+-
T Consensus 22 ~edA~alYq~I~~am~--sg~P~llELtCek~~~K 54 (87)
T PRK13683 22 AEDAEALYQQIRQAMR--SGNPRLLELTCEKVEDK 54 (87)
T ss_pred HHHHHHHHHHHHHHHh--cCCCcEEEEEecCcCCc
Confidence 3677888988888887 68899999999986653
No 410
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=23.52 E-value=2.4e+02 Score=25.31 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhCC----CceEEeeccccccCcHHHHHH--HhccCCEEEEEeCC
Q 008493 427 ERVALLGYGTAV----QSCLAASALLESNG----LRLTVADARFCKPLDHALIRS--LAKSHEVLITVEEG 487 (563)
Q Consensus 427 ~dv~iv~~G~~~----~~~~~Aa~~L~~~G----i~v~vi~~~~l~Pf~~~~i~~--~~~~~~~vvvvE~~ 487 (563)
++++|+++|+.. .....+++.|++.+ -.+.+++..+.-| +.+.. .....+++|++|..
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 368899999876 35567777776421 2378888776543 22212 23567888888874
No 411
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=23.29 E-value=1.4e+02 Score=25.22 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
....|..|.+.|++.|+....+++.. .|...+.+.+.+++.
T Consensus 8 ~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 8 KCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHc
Confidence 45788999999999999999999874 466777777666543
No 412
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=22.98 E-value=2.9e+02 Score=22.32 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.0
Q ss_pred EEEEEechhHH-----HHHHHHHHHHhC--CCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCC
Q 008493 429 VALLGYGTAVQ-----SCLAASALLESN--GLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGS 488 (563)
Q Consensus 429 v~iv~~G~~~~-----~~~~Aa~~L~~~--Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~ 488 (563)
+++++.|+... ...+.++.|++. +..+.+--.....|.-.+.+.++.+ ..++|+++=-..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~ 69 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAP 69 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCcc
Confidence 57888887653 333444556543 3455554444458877777777754 347777766543
No 413
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=22.95 E-value=3e+02 Score=24.17 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=36.5
Q ss_pred EEEechhH----HHHHHHHHHHHhCC--CceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC
Q 008493 431 LLGYGTAV----QSCLAASALLESNG--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 431 iv~~G~~~----~~~~~Aa~~L~~~G--i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
|+++|+.. .....+++.|++.. -.+++++..+.- .+ +...++.++++|+||...
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~-l~~~l~~~d~viiVDA~~ 61 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LE-LLDLLEGADRVIIVDAVD 61 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HH-HHHHHhcCCeEEEEECcc
Confidence 67777765 34566777787653 468899988773 23 334455588999999753
No 414
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.87 E-value=2.4e+02 Score=25.88 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHH
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA 469 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~ 469 (563)
+++++.|.--.-++-++..|.+.|++|.|+-+.....++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~ 69 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSED 69 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHH
Confidence 56777788888899999999999999999665544455444
No 415
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.40 E-value=2e+02 Score=30.33 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=51.7
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeC-CC-CCCh--HHHHHHHHHHcC
Q 008493 430 ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE-GS-IGGF--GSHVVQFLAQDG 504 (563)
Q Consensus 430 ~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~-~~-~gg~--g~~v~~~l~~~~ 504 (563)
=||++-..=..+++.++.|+.+|++|..+.+..==-.+.+.+++.++..-.+|.+=. |+ +|-+ =.+|++.+.+.+
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 456666677788899999988899999999887555677888888865444444433 44 3433 445666666654
No 416
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=21.72 E-value=4.7e+02 Score=22.75 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=35.6
Q ss_pred cEEEEEechhHHHHHH----HHHHHHhC-CCceEEeeccccccCcHHHHHHHh-ccCCEEEEE
Q 008493 428 RVALLGYGTAVQSCLA----ASALLESN-GLRLTVADARFCKPLDHALIRSLA-KSHEVLITV 484 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~----Aa~~L~~~-Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvv 484 (563)
-+.||+-||--....+ .++.|++. ++.+.+--+-.-.|--.+.+.++. +..++++|+
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 3789999997655544 34455433 555555444445675567777765 456788888
No 417
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=21.66 E-value=1.4e+02 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=26.8
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhCCCceEEeecc
Q 008493 425 EGERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~-~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
+..+++||++|.... .--+..+.|++.||.+++.+.+
T Consensus 53 ~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 53 PRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 455799999998642 2234556788899999998864
No 418
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.19 E-value=1.7e+02 Score=25.68 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 477 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~ 477 (563)
....|..|.+.|++.|+....+++.. .|++.+.+.+.++.
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 9 SCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 35788999999999999999999863 67788877777655
No 419
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=21.19 E-value=1.5e+02 Score=31.22 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 87 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN 87 (563)
++.+++|+++| ..++++.+.=+++. ..+|.+..++-.++|+++++.+-
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R 106 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMR 106 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEecc
Confidence 57889999988 56688877777777 56699999999999999877554
No 420
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=21.13 E-value=5e+02 Score=27.75 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEE--cccccccchhHHHHHhhcccCCCEEEEEeC
Q 008493 33 ISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILND 86 (563)
Q Consensus 33 l~~a~G~A~A~~~~~~~~~vv~~~--GDG~~~~G~~~Eal~~a~~~~~pli~iv~n 86 (563)
.-+|.|+|.+. .+..+|++ |=|.++ ..-++..|-..+.|+++|.-+
T Consensus 51 ~~mAdgyar~t-----g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~ 98 (432)
T TIGR00173 51 GFFALGLAKAS-----GRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTAD 98 (432)
T ss_pred HHHHHHHHhcc-----CCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCC
Confidence 35566776653 23444444 666664 335677777778999999843
No 421
>PRK09004 FMN-binding protein MioC; Provisional
Probab=21.04 E-value=5.9e+02 Score=22.59 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=45.2
Q ss_pred EEEEechhHHHHHHHHHHH----HhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChH---HHHHHHHH
Q 008493 430 ALLGYGTAVQSCLAASALL----ESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFG---SHVVQFLA 501 (563)
Q Consensus 430 ~iv~~G~~~~~~~~Aa~~L----~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g---~~v~~~l~ 501 (563)
+.|-|||.+..+.+.|+.| ++.|+++.++++.. +.+ +...+.+|++-... .|-+- ..+..+|.
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--------~~~-l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~ 74 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--------LDD-LSASGLWLIVTSTHGAGDLPDNLQPFFEELQ 74 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--------HHH-hccCCeEEEEECCCCCCCCChhHHHHHHHHH
Confidence 3466888887777776554 45799999887632 122 34467777777654 44443 33344444
Q ss_pred HcCCCCCCCceEEeecCC
Q 008493 502 QDGLLDGTVKWRPLVLPD 519 (563)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~ 519 (563)
+........++..+|.-|
T Consensus 75 ~~~~~l~g~~~aVfGlGd 92 (146)
T PRK09004 75 EQKPDLSQVRFAAIGIGS 92 (146)
T ss_pred hcCCCCCCCEEEEEeecC
Confidence 431111134555666533
No 422
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.52 E-value=78 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=25.0
Q ss_pred eCCcEEEEEechhHHHH-HHHHHHHHhCCCceEEeecc
Q 008493 425 EGERVALLGYGTAVQSC-LAASALLESNGLRLTVADAR 461 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~-~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
+..|++||++|...... .+..+.|++.||.+++.+.+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 35699999999875332 35566788899999998864
No 423
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=20.46 E-value=1.6e+02 Score=26.98 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=33.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCc-------HHHHHHHhccCCEEEEEe
Q 008493 425 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLD-------HALIRSLAKSHEVLITVE 485 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~-------~~~i~~~~~~~~~vvvvE 485 (563)
.|+.++|+.||..-.- .|+.|+..|..|.|.+...++-+. ...+.+.++..+-+|+.-
T Consensus 22 ~Gk~vvV~GYG~vG~g---~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKG---IARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTAT 86 (162)
T ss_dssp TTSEEEEE--SHHHHH---HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-S
T ss_pred CCCEEEEeCCCcccHH---HHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECC
Confidence 4778999999998764 445567789999999987444321 113455566667666543
No 424
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=20.32 E-value=6.4e+02 Score=22.68 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=22.2
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 200 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v 200 (563)
|+.++.+ .|..++...++.+.+. .++|++|.+
T Consensus 133 ~~~v~~P---~~~~e~~~~l~~a~~~-~~~p~~i~~ 164 (168)
T smart00861 133 GLKVVAP---SDPAEAKGLLRAAIRR-DDGPPVIRL 164 (168)
T ss_pred CcEEEec---CCHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 4444445 8899999888888852 357876654
No 425
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=20.14 E-value=3.3e+02 Score=23.98 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=34.3
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC
Q 008493 431 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 488 (563)
Q Consensus 431 iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~ 488 (563)
|+++|+.. .....+++.|++. .+++++..+. ..+ +...+..++++|++|...
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~---~~~-ll~~i~~~d~viiVDA~~ 57 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD---GFG-LLSHLENYDIVIFIDVAV 57 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc---HHH-HHHHHcCCCEEEEEEeec
Confidence 67778766 3556777777664 4778888763 223 334455788899988743
No 426
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.12 E-value=6.7e+02 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.3
Q ss_pred EEechhHHHHHHHHHHHHhCCCceE
Q 008493 432 LGYGTAVQSCLAASALLESNGLRLT 456 (563)
Q Consensus 432 v~~G~~~~~~~~Aa~~L~~~Gi~v~ 456 (563)
.++-+-...+.+|++.|++-|+..+
T Consensus 5 mGS~SD~~~~~~a~~~L~~~gi~~d 29 (156)
T TIGR01162 5 MGSDSDLPTMKKAADILEEFGIPYE 29 (156)
T ss_pred ECcHhhHHHHHHHHHHHHHcCCCeE
Confidence 3333456889999999988888743
No 427
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=20.11 E-value=2.9e+02 Score=20.84 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCC-C--ChHHHHHHHHH
Q 008493 443 AASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-G--GFGSHVVQFLA 501 (563)
Q Consensus 443 ~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~-g--g~g~~v~~~l~ 501 (563)
...+.|+++|++++.++- |++ .+. .+...+|+++.... . -=.+.+.+++.
T Consensus 9 a~~~~L~~~g~~v~~~~~----~~~--~l~---~~~~tll~i~~~~~~~~~~~~~~l~~~v~ 61 (70)
T PF14258_consen 9 ALYQLLEEQGVKVERWRK----PYE--ALE---ADDGTLLVIGPDLRLSEPEEAEALLEWVE 61 (70)
T ss_pred HHHHHHHHCCCeeEEecc----cHH--HhC---CCCCEEEEEeCCCCCCchHHHHHHHHHHH
Confidence 445678888998876664 332 232 25567888887632 1 12234555554
No 428
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.05 E-value=3e+02 Score=25.85 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEEEechhH--HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC-----CEEEEE
Q 008493 429 VALLGYGTAV--QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-----EVLITV 484 (563)
Q Consensus 429 v~iv~~G~~~--~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~-----~~vvvv 484 (563)
+++++++... ....++++.|+++||.+.+|.+-+..+ ..+.+..+.+.. .++|.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~-~~~~l~~~~~~~~~~~~s~~~~~ 172 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDD-NTEKLTAFIDAVNGKDGSHLVSV 172 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCC-CHHHHHHHHHHhcCCCCceEEEe
Done!