Query 008493
Match_columns 563
No_of_seqs 220 out of 2364
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 5.2E-89 1.8E-93 757.7 50.2 526 1-550 97-623 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3.1E-88 1.1E-92 751.1 47.2 525 1-550 95-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 1.8E-80 6.1E-85 684.4 45.8 475 1-546 95-615 (616)
4 3rim_A Transketolase, TK; TPP, 100.0 3.2E-79 1.1E-83 676.5 39.6 476 1-550 106-699 (700)
5 3l84_A Transketolase; TKT, str 100.0 6.1E-79 2.1E-83 670.0 38.6 464 1-547 88-631 (632)
6 3m49_A Transketolase; alpha-be 100.0 1.6E-78 5.6E-83 671.8 37.0 478 1-549 113-690 (690)
7 3kom_A Transketolase; rossmann 100.0 3.2E-78 1.1E-82 668.5 37.0 476 1-548 89-662 (663)
8 3uk1_A Transketolase; structur 100.0 3.2E-78 1.1E-82 670.6 35.7 474 1-549 128-710 (711)
9 2e6k_A Transketolase; structur 100.0 4.4E-77 1.5E-81 662.6 37.6 470 1-549 91-651 (651)
10 1itz_A Transketolase; calvin c 100.0 1.8E-76 6E-81 659.6 41.8 472 1-547 100-674 (675)
11 2r8o_A Transketolase 1, TK 1; 100.0 2.8E-76 9.5E-81 658.1 38.4 477 1-550 87-664 (669)
12 1r9j_A Transketolase; domains, 100.0 7.5E-76 2.6E-80 653.6 38.1 472 1-552 89-658 (673)
13 1gpu_A Transketolase; transfer 100.0 4.2E-75 1.5E-79 649.0 40.1 472 1-553 90-668 (680)
14 2qtc_A Pyruvate dehydrogenase 100.0 3.9E-70 1.3E-74 616.7 41.0 530 1-551 162-858 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 7.9E-58 2.7E-62 506.4 33.2 479 4-550 153-786 (845)
16 1ik6_A Pyruvate dehydrogenase; 100.0 4.3E-58 1.5E-62 476.3 24.9 338 201-550 10-368 (369)
17 2jgd_A 2-oxoglutarate dehydrog 100.0 1.3E-56 4.3E-61 508.2 33.5 458 24-546 318-930 (933)
18 1w85_B Pyruvate dehydrogenase 100.0 3.2E-54 1.1E-58 441.8 30.2 304 239-550 3-323 (324)
19 2ozl_B PDHE1-B, pyruvate dehyd 100.0 5.5E-54 1.9E-58 441.6 29.9 306 238-550 14-340 (341)
20 2yic_A 2-oxoglutarate decarbox 100.0 2.3E-54 7.7E-59 487.4 28.9 443 26-528 244-853 (868)
21 1umd_B E1-beta, 2-OXO acid deh 100.0 1.1E-53 3.9E-58 438.0 29.2 304 238-550 3-323 (324)
22 2bfd_B 2-oxoisovalerate dehydr 100.0 4.2E-54 1.4E-58 443.4 25.2 318 224-550 6-341 (342)
23 2xt6_A 2-oxoglutarate decarbox 100.0 2E-53 6.9E-58 490.8 29.9 443 26-528 489-1098(1113)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 7.7E-52 2.6E-56 426.9 26.6 301 238-550 4-337 (338)
25 1yd7_A 2-keto acid:ferredoxin 99.9 5.7E-26 2E-30 238.0 9.9 284 239-549 23-394 (395)
26 2bfd_A 2-oxoisovalerate dehydr 99.8 1.2E-20 4.2E-25 197.0 14.4 147 10-211 146-294 (400)
27 2c42_A Pyruvate-ferredoxin oxi 99.8 3.9E-19 1.3E-23 208.3 28.3 254 282-551 55-384 (1231)
28 1umd_A E1-alpha, 2-OXO acid de 99.8 7.5E-21 2.6E-25 197.2 12.3 148 10-212 128-277 (367)
29 1w85_A Pyruvate dehydrogenase 99.8 1.5E-20 5E-25 194.3 14.2 137 21-211 136-275 (368)
30 1qs0_A 2-oxoisovalerate dehydr 99.8 3.2E-20 1.1E-24 193.8 13.1 135 25-212 179-315 (407)
31 2ozl_A PDHE1-A type I, pyruvat 99.8 2E-19 7E-24 185.3 14.0 131 25-211 138-270 (365)
32 3ju3_A Probable 2-oxoacid ferr 99.6 1.4E-15 4.9E-20 131.3 10.5 107 424-550 11-117 (118)
33 4feg_A Pyruvate oxidase; carba 99.5 1.5E-14 5E-19 160.2 7.8 133 25-210 418-552 (603)
34 1ybh_A Acetolactate synthase, 99.5 3.8E-14 1.3E-18 156.5 8.6 140 24-208 423-562 (590)
35 1t9b_A Acetolactate synthase, 99.5 3.9E-14 1.3E-18 158.2 8.3 133 23-208 509-641 (677)
36 1v5e_A Pyruvate oxidase; oxido 99.5 6.1E-14 2.1E-18 154.8 9.2 130 25-206 411-541 (590)
37 1ozh_A ALS, acetolactate synth 99.5 3.7E-14 1.3E-18 155.8 7.3 131 23-207 416-546 (566)
38 3eya_A Pyruvate dehydrogenase 99.5 4.8E-14 1.6E-18 154.4 7.6 131 24-208 403-533 (549)
39 2iht_A Carboxyethylarginine sy 99.4 9E-14 3.1E-18 153.0 9.2 127 24-204 433-561 (573)
40 1q6z_A BFD, BFDC, benzoylforma 99.4 6.8E-14 2.3E-18 152.5 7.7 126 27-205 401-526 (528)
41 2uz1_A Benzaldehyde lyase; thi 99.4 6E-14 2E-18 154.1 7.3 136 21-206 413-548 (563)
42 2vbi_A Pyruvate decarboxylase; 99.4 8.3E-14 2.8E-18 153.1 8.0 124 25-207 407-536 (566)
43 1ovm_A Indole-3-pyruvate decar 99.4 9.7E-14 3.3E-18 152.1 7.5 127 24-207 405-535 (552)
44 2vk8_A Pyruvate decarboxylase 99.4 7.4E-14 2.5E-18 153.4 6.0 132 24-207 410-545 (563)
45 2pgn_A Cyclohexane-1,2-dione h 99.4 9.7E-14 3.3E-18 153.2 6.6 133 24-210 421-553 (589)
46 2pan_A Glyoxylate carboligase; 99.4 1E-13 3.6E-18 153.8 6.7 138 24-207 439-583 (616)
47 3hww_A 2-succinyl-5-enolpyruvy 99.4 2.4E-13 8.1E-18 149.1 9.5 126 26-206 416-541 (556)
48 2vbf_A Branched-chain alpha-ke 99.4 1.7E-13 5.8E-18 150.8 7.2 127 24-207 422-554 (570)
49 2wvg_A PDC, pyruvate decarboxy 99.4 1.5E-13 5.3E-18 151.0 6.7 127 24-208 410-545 (568)
50 2nxw_A Phenyl-3-pyruvate decar 99.4 1.7E-13 5.9E-18 150.4 6.7 125 25-207 420-545 (565)
51 2x7j_A 2-succinyl-5-enolpyruvy 99.4 2E-13 6.9E-18 151.1 5.9 131 25-207 453-583 (604)
52 2q28_A Oxalyl-COA decarboxylas 99.4 1E-12 3.5E-17 144.4 11.3 127 25-207 419-547 (564)
53 2c31_A Oxalyl-COA decarboxylas 99.4 1.1E-12 3.7E-17 144.3 10.8 126 25-207 424-550 (568)
54 3lq1_A 2-succinyl-5-enolpyruvy 99.3 1.7E-12 6E-17 142.8 8.0 127 29-208 438-564 (578)
55 2c42_A Pyruvate-ferredoxin oxi 98.7 2.6E-08 8.9E-13 117.1 9.7 117 49-205 953-1071(1231)
56 2uz1_A Benzaldehyde lyase; thi 94.9 0.18 6.1E-06 54.7 12.7 123 273-399 35-164 (563)
57 1v5e_A Pyruvate oxidase; oxido 94.8 0.12 4E-06 56.5 10.9 113 285-400 47-165 (590)
58 1ozh_A ALS, acetolactate synth 94.7 0.21 7.1E-06 54.2 12.7 115 282-399 50-170 (566)
59 1ybh_A Acetolactate synthase, 94.7 0.23 7.7E-06 54.2 13.0 113 282-399 52-172 (590)
60 3eya_A Pyruvate dehydrogenase 94.7 0.33 1.1E-05 52.4 14.0 113 282-399 43-162 (549)
61 2wvg_A PDC, pyruvate decarboxy 94.5 0.39 1.3E-05 52.0 14.3 116 282-400 43-170 (568)
62 4feg_A Pyruvate oxidase; carba 94.3 0.42 1.4E-05 52.2 14.0 114 282-400 52-172 (603)
63 1t9b_A Acetolactate synthase, 94.2 0.31 1.1E-05 54.0 12.6 114 282-398 122-241 (677)
64 2pgn_A Cyclohexane-1,2-dione h 94.1 0.33 1.1E-05 52.9 12.6 113 282-399 45-165 (589)
65 2vbi_A Pyruvate decarboxylase; 94.1 0.36 1.2E-05 52.2 12.9 115 282-400 43-170 (566)
66 2iht_A Carboxyethylarginine sy 94.0 0.18 6.3E-06 54.7 10.3 115 281-399 49-171 (573)
67 1q6z_A BFD, BFDC, benzoylforma 93.6 0.42 1.4E-05 51.3 12.1 115 282-400 40-162 (528)
68 3hww_A 2-succinyl-5-enolpyruvy 93.5 1.2 4.2E-05 47.9 15.7 147 245-399 10-171 (556)
69 2pan_A Glyoxylate carboligase; 93.4 0.53 1.8E-05 51.5 12.8 145 247-399 31-188 (616)
70 3lq1_A 2-succinyl-5-enolpyruvy 92.7 1.1 3.9E-05 48.4 13.9 147 245-399 13-178 (578)
71 2nxw_A Phenyl-3-pyruvate decar 92.7 0.65 2.2E-05 50.2 11.9 153 238-399 20-186 (565)
72 2x7j_A 2-succinyl-5-enolpyruvy 92.0 1.3 4.3E-05 48.4 13.1 148 245-400 33-199 (604)
73 2c31_A Oxalyl-COA decarboxylas 91.6 1.3 4.5E-05 47.8 12.8 116 281-399 48-171 (568)
74 2vk8_A Pyruvate decarboxylase 91.1 1.4 4.7E-05 47.6 12.1 114 282-400 44-171 (563)
75 2q28_A Oxalyl-COA decarboxylas 90.9 1.7 5.9E-05 46.8 12.8 116 281-399 46-169 (564)
76 2vbf_A Branched-chain alpha-ke 90.1 1.8 6.1E-05 46.7 12.0 117 279-399 61-190 (570)
77 1ovm_A Indole-3-pyruvate decar 87.5 3.3 0.00011 44.4 11.8 117 279-399 41-170 (552)
78 1w85_A Pyruvate dehydrogenase 82.8 3.8 0.00013 41.6 8.9 101 293-396 147-263 (368)
79 1qs0_B 2-oxoisovalerate dehydr 80.4 7.8 0.00027 38.6 10.2 40 161-205 138-178 (338)
80 3m49_A Transketolase; alpha-be 80.4 6 0.00021 43.6 10.0 89 306-397 173-270 (690)
81 2bfd_A 2-oxoisovalerate dehydr 80.1 4.1 0.00014 41.8 8.1 100 294-396 168-283 (400)
82 1gpu_A Transketolase; transfer 79.8 4.7 0.00016 44.5 8.9 89 306-397 149-247 (680)
83 3kom_A Transketolase; rossmann 79.5 6.8 0.00023 43.0 10.1 89 306-397 149-246 (663)
84 2o1s_A 1-deoxy-D-xylulose-5-ph 79.4 9.1 0.00031 41.7 11.1 101 32-201 373-477 (621)
85 2r8o_A Transketolase 1, TK 1; 78.7 5.4 0.00018 43.9 9.0 88 306-396 147-243 (669)
86 1r9j_A Transketolase; domains, 76.7 9.3 0.00032 42.0 10.2 89 306-397 149-247 (673)
87 1umd_A E1-alpha, 2-OXO acid de 74.5 9.7 0.00033 38.5 9.0 100 294-396 150-265 (367)
88 3l84_A Transketolase; TKT, str 74.3 7.5 0.00026 42.4 8.5 101 293-397 119-239 (632)
89 3rim_A Transketolase, TK; TPP, 73.0 12 0.00039 41.4 9.6 89 306-397 169-266 (700)
90 3uk1_A Transketolase; structur 72.4 6.1 0.00021 43.7 7.3 88 306-397 188-284 (711)
91 2ozl_B PDHE1-B, pyruvate dehyd 71.6 16 0.00054 36.5 9.6 32 165-201 153-184 (341)
92 2bfd_B 2-oxoisovalerate dehydr 71.1 15 0.00051 36.7 9.3 35 165-204 159-193 (342)
93 2ozl_A PDHE1-A type I, pyruvat 70.9 7.4 0.00025 39.4 7.0 101 293-396 145-259 (365)
94 1qs0_A 2-oxoisovalerate dehydr 70.9 8.6 0.0003 39.5 7.6 101 294-397 187-304 (407)
95 2e6k_A Transketolase; structur 70.7 13 0.00046 40.6 9.5 88 306-397 151-247 (651)
96 2o1x_A 1-deoxy-D-xylulose-5-ph 70.1 11 0.00037 41.2 8.6 100 294-397 129-286 (629)
97 1itz_A Transketolase; calvin c 69.3 15 0.00052 40.4 9.6 89 306-397 160-258 (675)
98 3mos_A Transketolase, TK; thia 67.0 31 0.0011 37.4 11.4 50 32-88 367-416 (616)
99 3ipz_A Monothiol glutaredoxin- 66.6 9.4 0.00032 31.0 5.6 68 427-495 18-90 (109)
100 2wci_A Glutaredoxin-4; redox-a 61.2 11 0.00036 32.3 5.1 65 428-493 36-105 (135)
101 1w85_B Pyruvate dehydrogenase 59.5 44 0.0015 32.8 10.1 34 165-203 141-174 (324)
102 3zyw_A Glutaredoxin-3; metal b 59.4 13 0.00046 30.3 5.2 67 427-494 16-87 (111)
103 1ik6_A Pyruvate dehydrogenase; 58.2 30 0.001 34.9 8.7 34 165-203 189-222 (369)
104 1wik_A Thioredoxin-like protei 54.8 11 0.00038 30.4 4.0 66 427-493 15-85 (109)
105 3rpe_A MDAB, modulator of drug 51.9 42 0.0014 31.0 7.9 59 440-500 48-106 (218)
106 1jl3_A Arsenate reductase; alp 51.2 16 0.00055 31.2 4.6 108 428-553 31-139 (139)
107 2q62_A ARSH; alpha/beta, flavo 51.0 38 0.0013 32.0 7.6 64 439-502 52-123 (247)
108 2vzf_A NADH-dependent FMN redu 50.4 34 0.0012 30.7 7.0 65 437-501 18-93 (197)
109 2jgd_A 2-oxoglutarate dehydrog 50.2 58 0.002 37.1 10.1 108 285-396 319-452 (933)
110 1umd_B E1-beta, 2-OXO acid deh 48.5 90 0.0031 30.5 10.3 34 165-203 142-175 (324)
111 2lqo_A Putative glutaredoxin R 46.8 46 0.0016 26.0 6.3 71 428-503 5-82 (92)
112 2yic_A 2-oxoglutarate decarbox 46.7 58 0.002 36.8 9.4 77 317-396 293-380 (868)
113 2qtc_A Pyruvate dehydrogenase 46.7 83 0.0029 35.6 10.6 51 318-371 237-292 (886)
114 1sqs_A Conserved hypothetical 45.9 48 0.0016 30.8 7.5 65 438-502 18-104 (242)
115 3u7r_A NADPH-dependent FMN red 43.7 53 0.0018 29.6 7.1 64 437-500 17-90 (190)
116 2wem_A Glutaredoxin-related pr 41.9 39 0.0013 27.8 5.4 69 426-495 19-93 (118)
117 1aba_A Glutaredoxin; electron 41.0 39 0.0013 25.6 5.0 59 437-495 13-82 (87)
118 2fzv_A Putative arsenical resi 40.5 50 0.0017 31.8 6.7 64 439-502 76-148 (279)
119 4dik_A Flavoprotein; TM0755, e 40.2 86 0.003 31.9 8.8 71 430-500 268-342 (410)
120 3lyu_A Putative hydrogenase; t 39.8 31 0.001 29.4 4.6 37 425-461 17-53 (142)
121 2amj_A Modulator of drug activ 39.0 65 0.0022 29.1 7.0 60 440-501 35-94 (204)
122 3gx8_A Monothiol glutaredoxin- 38.6 30 0.001 28.6 4.2 68 427-495 16-91 (121)
123 2l69_A Rossmann 2X3 fold prote 37.2 80 0.0027 24.7 5.9 69 429-503 3-74 (134)
124 3qmx_A Glutaredoxin A, glutare 36.4 49 0.0017 26.1 5.0 66 428-495 17-84 (99)
125 1t0i_A YLR011WP; FMN binding p 35.1 78 0.0027 27.9 6.8 65 438-502 17-109 (191)
126 2wqp_A Polysialic acid capsule 34.2 2.8E+02 0.0096 27.4 11.1 72 429-501 150-228 (349)
127 2a5l_A Trp repressor binding p 34.2 48 0.0016 29.4 5.2 65 437-502 19-96 (200)
128 1yd7_A 2-keto acid:ferredoxin 33.4 63 0.0022 32.7 6.5 50 31-88 75-124 (395)
129 3f2v_A General stress protein 32.9 70 0.0024 28.8 6.0 62 441-502 19-83 (192)
130 1t1v_A SH3BGRL3, SH3 domain-bi 31.7 29 0.00098 26.9 2.8 66 428-495 3-77 (93)
131 2yan_A Glutaredoxin-3; oxidore 31.3 49 0.0017 26.1 4.3 67 428-495 18-89 (105)
132 3hly_A Flavodoxin-like domain; 30.9 81 0.0028 27.2 6.0 60 430-492 3-66 (161)
133 3rhb_A ATGRXC5, glutaredoxin-C 30.7 60 0.002 25.9 4.8 67 428-495 20-90 (113)
134 3l4e_A Uncharacterized peptida 30.6 88 0.003 28.5 6.4 55 426-483 27-85 (206)
135 5nul_A Flavodoxin; electron tr 29.7 82 0.0028 26.0 5.6 54 431-491 2-59 (138)
136 1rtt_A Conserved hypothetical 29.5 46 0.0016 29.6 4.2 57 445-502 30-97 (193)
137 2fz5_A Flavodoxin; alpha/beta 28.7 1.1E+02 0.0038 24.9 6.3 66 430-502 2-73 (137)
138 3upl_A Oxidoreductase; rossman 28.6 1.1E+02 0.0037 31.6 7.3 119 426-558 107-233 (446)
139 3kkj_A Amine oxidase, flavin-c 27.7 45 0.0015 30.1 3.9 31 427-460 3-33 (336)
140 3g8r_A Probable spore coat pol 26.7 4.2E+02 0.014 26.2 10.9 64 429-492 137-207 (350)
141 2xt6_A 2-oxoglutarate decarbox 26.0 1.9E+02 0.0065 33.6 9.4 76 318-396 539-625 (1113)
142 3fwz_A Inner membrane protein 25.8 1.5E+02 0.0051 24.5 6.6 31 428-461 9-39 (140)
143 1ydg_A Trp repressor binding p 25.3 79 0.0027 28.4 5.1 66 437-502 20-103 (211)
144 4hs4_A Chromate reductase; tri 25.1 1.1E+02 0.0036 27.6 5.8 63 438-501 22-97 (199)
145 3rdw_A Putative arsenate reduc 25.0 82 0.0028 25.9 4.6 43 436-479 13-55 (121)
146 3hr4_A Nitric oxide synthase, 24.8 83 0.0028 29.0 5.1 83 428-517 41-130 (219)
147 3l78_A Regulatory protein SPX; 24.6 1.1E+02 0.0039 24.9 5.4 41 436-477 8-48 (120)
148 3fz4_A Putative arsenate reduc 24.3 79 0.0027 26.0 4.4 42 436-478 11-52 (120)
149 2e85_A Hydrogenase 3 maturatio 23.6 2.5E+02 0.0085 24.2 7.7 58 428-487 5-67 (159)
150 3fvw_A Putative NAD(P)H-depend 23.2 1.6E+02 0.0053 26.2 6.6 62 440-502 21-92 (192)
151 1vp8_A Hypothetical protein AF 23.2 2.2E+02 0.0074 25.7 7.1 24 535-558 121-146 (201)
152 1v95_A Nuclear receptor coacti 22.7 2.3E+02 0.0078 23.8 6.9 58 428-486 10-69 (130)
153 3gkx_A Putative ARSC family re 22.7 80 0.0027 26.0 4.1 42 436-478 12-53 (120)
154 3fni_A Putative diflavin flavo 22.6 1E+02 0.0035 26.5 5.0 54 430-485 7-64 (159)
155 3lrx_A Putative hydrogenase; a 22.4 72 0.0025 27.5 4.0 50 425-474 22-72 (158)
156 2ark_A Flavodoxin; FMN, struct 21.1 1.6E+02 0.0055 25.8 6.2 25 439-463 20-45 (188)
157 4bby_A Alkyldihydroxyacetoneph 21.0 3.7E+02 0.013 29.0 10.2 90 360-454 202-297 (658)
158 1u6t_A SH3 domain-binding glut 20.8 81 0.0028 26.2 3.7 53 440-496 18-82 (121)
159 3h8q_A Thioredoxin reductase 3 20.7 2.3E+02 0.0079 22.5 6.6 66 427-495 17-87 (114)
160 1t5b_A Acyl carrier protein ph 20.6 2.2E+02 0.0076 24.8 7.1 64 439-502 20-111 (201)
161 3tem_A Ribosyldihydronicotinam 20.4 1.6E+02 0.0054 27.1 6.1 64 439-502 19-117 (228)
162 1vli_A Spore coat polysacchari 20.2 5.1E+02 0.017 25.9 10.1 71 429-500 160-239 (385)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=5.2e-89 Score=757.67 Aligned_cols=526 Identities=40% Similarity=0.656 Sum_probs=440.3
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
+.++||++|++|||++.+++|+.+++|+||+++|+|+|+|+|.++++++++|||++|||++++|++||+|++|+.+++|+
T Consensus 97 ~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pl 176 (629)
T 2o1x_A 97 MADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKM 176 (629)
T ss_dssp GGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSE
T ss_pred HhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCE
Confidence 46899999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+ +++.+. ++.+...+++++..+.|..++.+.+.+....+.+..+...+..++++.++.|.+..+
T Consensus 177 i~IvnnN~-~~i~~~--------~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~ 247 (629)
T 2o1x_A 177 LIVLNDNE-MSISEN--------VGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNP 247 (629)
T ss_dssp EEEEEECS-BSSSBC--------CSSHHHHC---------------------------------------------CCCT
T ss_pred EEEEECCC-CCCCCC--------hhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchH
Confidence 99999998 666332 333445556666677777665555443322221112222222233333334434478
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
+++|||++++.+||||++++.++++++++ .++|++|+++|.||+|++++++++..||+.++|++.++..... +..+
T Consensus 248 ~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~--~~~~ 323 (629)
T 2o1x_A 248 FAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPS--SAYS 323 (629)
T ss_dssp TGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCC--CCCB
T ss_pred HHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCccccc--chHH
Confidence 99999999878899999999999999987 5899999999999999999888888999999999988753212 2678
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++|++++++++|+++++++.+|+++||+||+|+||+|++|+++|+|+|++|+|||+++|++|++|++
T Consensus 324 ~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~ 403 (629)
T 2o1x_A 324 WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAY 403 (629)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGH
T ss_pred HHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEecHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
||++++++++++||+++++++|++|++|+|||+.+|+++++.+||++|++|+|++|++++++.|++. ++|++||++|+.
T Consensus 404 dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 404 DQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-DGPFAIRYPRGN 482 (629)
T ss_dssp HHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-SSCEEEECCSSB
T ss_pred HHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 9999999999999999999988878899999999999999999999999999999999999999984 899999999987
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
++...+ ...+.+++|+++++++|+|++||++|++++.|++|++.|+ +++||+++|++|||++++.++++++++
T Consensus 483 ~~~~~~---~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~~~~~~~~~ 555 (629)
T 2o1x_A 483 TAQVPA---GTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLREVGGRARA 555 (629)
T ss_dssp CCCCCT---TCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHHHHHHHCSE
T ss_pred CCCCcc---cccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHHHHHhhCCc
Confidence 533211 1235678999999999999999999999999999999986 899999999999999999999999999
Q ss_pred EEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 481 LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 481 vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+|++|++. .||++++|++.+.++++ +.++.++|++|.|+++|+.+++++++|+|++.|++++++++.
T Consensus 556 vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~ 623 (629)
T 2o1x_A 556 LITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV 623 (629)
T ss_dssp EEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTC
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 99999986 79999999999998864 578999999999999999999999999999999999998764
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-88 Score=751.08 Aligned_cols=525 Identities=49% Similarity=0.783 Sum_probs=414.6
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCE
Q 008493 1 MHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDM 80 (563)
Q Consensus 1 ~~~~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pl 80 (563)
|.+|||++|++|||++.+++++.+++|+||+++|+|+|+|+|.++++++++|||++|||++++|++||+|++|+.+++|+
T Consensus 95 ~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pl 174 (621)
T 2o1s_A 95 IGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDM 174 (621)
T ss_dssp GGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSE
T ss_pred hhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCE
Confidence 35799999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcch
Q 008493 81 IVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTL 160 (563)
Q Consensus 81 i~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (563)
++||+||+ +++.+.. +.+...+.+++.++.|..++.+..++.... +...++..+..++++++..| ..+
T Consensus 175 i~vvnnN~-~~i~~~~--------~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-p~~~~~~~r~~~~~~~~~~p--~~~ 242 (621)
T 2o1s_A 175 LVILNDNE-MSISENV--------GALNNHLAQLLSGKLYSSLREGGKKVFSGV-PPIKELLKRTEEHIKGMVVP--GTL 242 (621)
T ss_dssp EEEEEECC------------------------------------------------------------------C--HHH
T ss_pred EEEEeCCC-cccCCCc--------chHHHHHHhhhcchhHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhccCh--hhH
Confidence 99999998 6664322 222334445555666665544433322110 00012223323333333322 477
Q ss_pred hhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCCCCCCCCccCCCCccccc
Q 008493 161 FEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQS 240 (563)
Q Consensus 161 ~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~ 240 (563)
++++||++++.+||||++++.++++++++ .++|++|+++|.||+|++++++++..||+.++|++.++.+........+
T Consensus 243 ~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~ 320 (621)
T 2o1s_A 243 FEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPS 320 (621)
T ss_dssp HHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC--------------------------CCB
T ss_pred HHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcCcccccccchHH
Confidence 99999999878899999999999999987 5899999999999999998888878999999999888763222233568
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHH
Q 008493 241 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAY 320 (563)
Q Consensus 241 ~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~ 320 (563)
|+++++++|.+++++|++++++++|+++++++.+|+++||+||+|+||+|++|+++|+|+|++|+|||+++|++|+++++
T Consensus 321 ~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~ 400 (621)
T 2o1s_A 321 YSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAY 400 (621)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEEETTGGGGGH
T ss_pred HHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEEEehHhHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 008493 321 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 321 dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~ 400 (563)
||++++++++++||+++++++|++|++|+|||+.+|+++++.+||++|++|+|++|++++++.|++..++|++|+++|+.
T Consensus 401 dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 401 DQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGN 480 (621)
T ss_dssp HHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEEECCSSB
T ss_pred HHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 99999999999999999999888788999999999999999999999999999999999999999865899999999987
Q ss_pred CCCccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE
Q 008493 401 GIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV 480 (563)
Q Consensus 401 ~~~~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~ 480 (563)
++...+|+ .+.+++|+++++++|+|++||++|++++.|++| ++|++++||+++|++|||++++.++++++++
T Consensus 481 ~~~~~~~~---~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~~~~~~~~~ 552 (621)
T 2o1s_A 481 AVGVELTP---LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEALILEMAASHEA 552 (621)
T ss_dssp CCCCCCCC---CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHHHHHHHHHHCSE
T ss_pred CCCCCCCc---cccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHHHHHHHHccCCe
Confidence 54433332 256788999999999999999999999999999 4599999999999999999999999999999
Q ss_pred EEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 481 LITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 481 vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+|++|++. .|||+++|++.+.++++ +.++.++|++|.|+++|+.+++++++|+|++.|+++|++++.
T Consensus 553 vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~~l~ 620 (621)
T 2o1s_A 553 LVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA 620 (621)
T ss_dssp EEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999986 79999999999998864 578999999999999999999999999999999999998863
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.8e-80 Score=684.38 Aligned_cols=475 Identities=25% Similarity=0.397 Sum_probs=408.1
Q ss_pred CCCCccCC-CCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC-CCcEEEEEcccccccchhHHHHHhhcccCC
Q 008493 1 MHTMRQTD-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVIGDGAMTAGQAYEAMNNAGYLDS 78 (563)
Q Consensus 1 ~~~~r~~~-g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~-~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~ 78 (563)
|.+|||+| +++|||++.++ ...+++|+||+++|+|+|+|+|.++.+. +++|||++|||++++|++||++++|+.+++
T Consensus 95 l~~~r~~~s~l~ghp~~~~~-~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l 173 (616)
T 3mos_A 95 LLNLRKISSDLDGHPVPKQA-FTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKL 173 (616)
T ss_dssp GGGTTCTTCSCCSSCCTTST-TCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTC
T ss_pred HHHhccCCCCCCCCCCCCCC-cccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCC
Confidence 46899999 89999998654 4447999999999999999999886655 589999999999999999999999999997
Q ss_pred C-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCC
Q 008493 79 D-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSG 157 (563)
Q Consensus 79 p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (563)
| +++|++||+ +++.+...... ...++.+
T Consensus 174 ~~livi~nnN~-~~i~~~~~~~~------------------------------------~~~~~~~-------------- 202 (616)
T 3mos_A 174 DNLVAILDINR-LGQSDPAPLQH------------------------------------QMDIYQK-------------- 202 (616)
T ss_dssp TTEEEEEEECS-BCSSSBCTTTT------------------------------------CHHHHHH--------------
T ss_pred CcEEEEEECCC-CCCcCCccccc------------------------------------ChHHHHH--------------
Confidence 5 777887787 67643321100 0123333
Q ss_pred cchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC-----------CC-
Q 008493 158 STLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK-----------FD- 225 (563)
Q Consensus 158 ~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~-----------f~- 225 (563)
++++|||+++ .+||||+++|.++++++ .++|++|+++|.||+|++..+ ++..||+.+. ++
T Consensus 203 --~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e-~~~~~Hg~~~~~~~~~~~~~~~~~ 274 (616)
T 3mos_A 203 --RCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE-DKESWHGKPLPKNMAEQIIQEIYS 274 (616)
T ss_dssp --HHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT-TCSSCTTCCCCHHHHHHHHHHHHH
T ss_pred --HHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc-CchhhcCCCCCHHHHHHHHHHHHH
Confidence 3999999988 77999999999999654 378999999999999997654 5688999752 10
Q ss_pred -CCCCccC-------------------C-----CCcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChHHHHHhCC
Q 008493 226 -PATGKQF-------------------K-----SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFP 280 (563)
Q Consensus 226 -~~~~~~~-------------------~-----~~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~~~~~~~p 280 (563)
..+++.. + ...+...++++++++|.+++++||+++++++|+++++.+..|+++||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p 354 (616)
T 3mos_A 275 QIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHP 354 (616)
T ss_dssp TCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCG
T ss_pred HHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCC
Confidence 0111111 0 01234568899999999999999999999999998888899999999
Q ss_pred CCeeecccchHHHHHHHHHHhhCCC-eeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVT 358 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~G~-~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~ 358 (563)
+||+|+||+|++|+++|+|+|++|+ +|++.+|++|+++++|||++ .+++++||+++.++.|+ .|.+|+|||+.+|++
T Consensus 355 ~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~-~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a 433 (616)
T 3mos_A 355 DRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRM-AAISESNINLCGSHCGVSIGEDGPSQMALEDLA 433 (616)
T ss_dssp GGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHH-HHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHH
T ss_pred CCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHH-HHHhCCCeEEEEECCCccccCCCCcccCHHHHH
Confidence 9999999999999999999999997 79999999999999999976 58999999999999998 789999999999999
Q ss_pred hhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeCCc--EEEEEech
Q 008493 359 FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGER--VALLGYGT 436 (563)
Q Consensus 359 ~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g~d--v~iv~~G~ 436 (563)
+++.+||++|++|+|++|+..+++.|++ .++|+++|++|...+.. .. ..+.+++||++++++|.| ++||++|+
T Consensus 434 ~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~--~~--~~~~~~~Gka~vl~eg~d~dv~iva~G~ 508 (616)
T 3mos_A 434 MFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII--YN--NNEDFQVGQAKVVLKSKDDQVTVIGAGV 508 (616)
T ss_dssp HHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC--SC--TTCCCCTTCCEEEECCSSEEEEEECCTH
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc--CC--CcccccCCeEEEEEeCCCCCEEEEEeCH
Confidence 9999999999999999999999999987 57999999998764321 11 234667899999999876 99999999
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC-CEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEE
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRP 514 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~-~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~ 514 (563)
+++.|++|++.|+++|++++|||+++++|||+++|.++++++ ++|||+|++. .||+|++|++.+.+++ +.++++
T Consensus 509 ~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~ 584 (616)
T 3mos_A 509 TLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTH 584 (616)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEE
Confidence 999999999999999999999999999999999999999998 9999999986 7999999999998864 468999
Q ss_pred eecCCcccCCCCHHHHHHHcCCCHHHHHHHHH
Q 008493 515 LVLPDRYIDHGSPADQLAQAGLTPSHIAATVF 546 (563)
Q Consensus 515 ~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~ 546 (563)
+|++ .|+.+|+.+++++++|||++.|+++|+
T Consensus 585 ~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 585 LAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp EEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred EeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 9998 599999999999999999999999985
No 4
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.2e-79 Score=676.50 Aligned_cols=476 Identities=19% Similarity=0.241 Sum_probs=402.2
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhc-------------CCCCcEEEEEcccccccchh
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-------------GRKNNVVAVIGDGAMTAGQA 66 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~-------------~~~~~vv~~~GDG~~~~G~~ 66 (563)
|.+|||+|+ ++|||++.+++++.+++|++|+++|+|+|+|+|.|++ +.+++|||++|||++++|++
T Consensus 106 l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~ 185 (700)
T 3rim_A 106 IESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVT 185 (700)
T ss_dssp HTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHH
T ss_pred HHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChH
Confidence 468999998 7999998889999999999999999999999999875 45789999999999999999
Q ss_pred HHHHHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHH
Q 008493 67 YEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 145 (563)
Q Consensus 67 ~Eal~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (563)
|||+++|+.|++| +++||+||+ +++++...... .+++.+
T Consensus 186 ~EAl~~A~~~~L~nli~i~d~N~-~si~~~~~~~~-------------------------------------~~~~~~-- 225 (700)
T 3rim_A 186 SEASSLAAVQQLGNLIVFYDRNQ-ISIEDDTNIAL-------------------------------------CEDTAA-- 225 (700)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECS-EETTEEGGGTC-------------------------------------CCCHHH--
T ss_pred HHHHHHHHHcCCCcEEEEEECCC-cccccchhhcc-------------------------------------chhHHH--
Confidence 9999999999975 999999999 67754332100 022333
Q ss_pred HHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCCC--
Q 008493 146 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK-- 223 (563)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~~-- 223 (563)
++++|||+++.+.||||++++.+|+++|++ ..++|++|+++|+||+|++.+|++ ..||+.++
T Consensus 226 --------------~~~a~G~~~~~V~DG~D~~al~~Al~~A~~-~~~~P~lI~~~T~kG~G~~~~e~~-~~~Hg~~~~~ 289 (700)
T 3rim_A 226 --------------RYRAYGWHVQEVEGGENVVGIEEAIANAQA-VTDRPSFIALRTVIGYPAPNLMDT-GKAHGAALGD 289 (700)
T ss_dssp --------------HHHHHTCEEEEEECTTCHHHHHHHHHHHHH-CCSSCEEEEEECCTTTTCTTTTTS-HHHHHSCCCH
T ss_pred --------------HHHHcCCeEEEECCCCCHHHHHHHHHHHHH-cCCCCEEEEEEEEeeecCCccCCC-ccccCCCCCH
Confidence 389999999854499999999999999986 257999999999999999987754 67898753
Q ss_pred -----------------CCCCC------------Cc------------------------------cCCC----------
Q 008493 224 -----------------FDPAT------------GK------------------------------QFKS---------- 234 (563)
Q Consensus 224 -----------------f~~~~------------~~------------------------------~~~~---------- 234 (563)
|+..+ |+ +++.
T Consensus 290 e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~ 369 (700)
T 3rim_A 290 DEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWE 369 (700)
T ss_dssp HHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTTSSCCCCC
T ss_pred HHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcchhhhccccc
Confidence 44311 10 0110
Q ss_pred -CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcC-----hHHHHHhC------C----CCeeecccchHHHHHHHH
Q 008493 235 -SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRF------P----TRCFDVGIAEQHAVTFAA 298 (563)
Q Consensus 235 -~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~-----~~~~~~~~------p----~r~i~~gi~E~~~~~~a~ 298 (563)
..+.++++++++++|.++++++|+++++++|++.+++ +..|+++| | +||+|+||+|++|+++|+
T Consensus 370 ~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~ 449 (700)
T 3rim_A 370 PGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILS 449 (700)
T ss_dssp TTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHH
Confidence 0134578999999999999999999999999986655 35788888 8 599999999999999999
Q ss_pred HHhhC-CCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHH
Q 008493 299 GLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 376 (563)
Q Consensus 299 G~a~~-G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e 376 (563)
|+|++ |+|||++||..|+.++.+|+ ++++++++||++++++.|. .|++|+|||+.+|+++++++||++|++|+|++|
T Consensus 450 GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e 528 (700)
T 3rim_A 450 GIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANE 528 (700)
T ss_dssp HHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred HHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHHH
Confidence 99999 99999999999998888888 4689999999999988776 789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeCC--------cEEEEEechhHHHHHHHHH
Q 008493 377 LFHMVATAAAIDD--RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE--------RVALLGYGTAVQSCLAASA 446 (563)
Q Consensus 377 ~~~~l~~a~~~~~--~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g~--------dv~iv~~G~~~~~~~~Aa~ 446 (563)
++.+++.|++..+ +|++||++|+.++. ++.. ..+.+++|+ +++++|+ |++||++|++++.|++|++
T Consensus 529 ~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~~al~Aa~ 604 (700)
T 3rim_A 529 TAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQT 604 (700)
T ss_dssp HHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCCCCCEEEEEechHHHHHHHHHH
Confidence 9999999998655 69999999986432 2221 124577887 7999986 9999999999999999999
Q ss_pred HHHhCCCceEEeeccccccCcH---HHHHHHhcc-CCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCccc
Q 008493 447 LLESNGLRLTVADARFCKPLDH---ALIRSLAKS-HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYI 522 (563)
Q Consensus 447 ~L~~~Gi~v~vi~~~~l~Pf~~---~~i~~~~~~-~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 522 (563)
.|+++||+++|||++|++|||. +++.+++++ ++.+|++|++...||. +++.+++ .++|+ ++|+
T Consensus 605 ~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~~igi-d~Fg 671 (700)
T 3rim_A 605 LLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------EIVSI-EHYG 671 (700)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------EEECC-CSCC
T ss_pred HHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------cEEcc-CcCc
Confidence 9999999999999999999999 455556664 7889999999866664 4444332 57898 9999
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 523 DHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 523 ~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
.+|+.+++++++|||++.|+++|+++++
T Consensus 672 ~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 672 ESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp CSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 5
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=6.1e-79 Score=670.04 Aligned_cols=464 Identities=21% Similarity=0.291 Sum_probs=393.3
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC-------CCcEEEEEcccccccchhHHHHHh
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-------KNNVVAVIGDGAMTAGQAYEAMNN 72 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~-------~~~vv~~~GDG~~~~G~~~Eal~~ 72 (563)
|.+|||+++ ++|||++ +++++.+++|+||+++|+|+|+|+|.++++. +++|||++|||++++|++||++++
T Consensus 88 l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~ 166 (632)
T 3l84_A 88 LKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSL 166 (632)
T ss_dssp HTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHH
Confidence 468999998 5699999 8999999999999999999999999987653 899999999999999999999999
Q ss_pred hcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhc
Q 008493 73 AGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 151 (563)
Q Consensus 73 a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (563)
|+.+++| +++|++||+ +++.+......
T Consensus 167 A~~~~L~~livi~nnN~-~~i~~~~~~~~--------------------------------------------------- 194 (632)
T 3l84_A 167 AGLHKLDNFILIYDSNN-ISIEGDVGLAF--------------------------------------------------- 194 (632)
T ss_dssp HHHTTCTTEEEEEEECS-EETTEEGGGTC---------------------------------------------------
T ss_pred HHHcCCCcEEEEEECCC-cccccchhhhc---------------------------------------------------
Confidence 9999965 888888888 67643321100
Q ss_pred cccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC---------
Q 008493 152 MISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--------- 222 (563)
Q Consensus 152 ~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~--------- 222 (563)
..++..++++|||+++ .+||||+++|.++++++++ .++|++|+++|.||+|++..+ +...||+.+
T Consensus 195 --~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~~e~~~~~ 268 (632)
T 3l84_A 195 --NENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELE-GSHKSHGAPLGEEVIKKA 268 (632)
T ss_dssp --CCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGT-TCGGGSSSCCCHHHHHHH
T ss_pred --ChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCC-CcccccCCCCCHHHHHHH
Confidence 0122344999999998 8899999999999999997 689999999999999998855 457899986
Q ss_pred ----------CCCCCCC------------cc---------------------CCC--------C--cccccHHHHHHHHH
Q 008493 223 ----------KFDPATG------------KQ---------------------FKS--------S--ARTQSYTTYFAEAL 249 (563)
Q Consensus 223 ----------~f~~~~~------------~~---------------------~~~--------~--~~~~~~~~a~~~~l 249 (563)
+|+..++ +. +++ . ..+...+++++++|
T Consensus 269 ~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r~a~~~~l 348 (632)
T 3l84_A 269 KEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATRDSNGEIL 348 (632)
T ss_dssp HHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHHHHHHHHH
T ss_pred HHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHHHHHHHHH
Confidence 4654211 00 000 0 13457889999999
Q ss_pred HHHHhcCCCEEEEecCCCCCcChH-HHHHhC-CCCeeecccchHHHHHHHHHHhhC-CCeeEEeechhhHHHHHHHHHHH
Q 008493 250 IAEAEVDKDVVAIHAAMGGGTGLN-LFLRRF-PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHD 326 (563)
Q Consensus 250 ~~~~~~~~~v~~~~~D~~~s~~~~-~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~~~~f~~~a~dqi~~~ 326 (563)
.++++.+|+++++++|+++|++.. .+.++| |+||+|+||+|++|+++|+|+|++ |+|||+++|++|+.++++||+ +
T Consensus 349 ~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~~~~ir-~ 427 (632)
T 3l84_A 349 NVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYLKPAAR-I 427 (632)
T ss_dssp HHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHH-H
T ss_pred HHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHH-H
Confidence 999999999999999998666442 223678 999999999999999999999999 899999999999999999995 6
Q ss_pred hccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcc
Q 008493 327 VDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVE 405 (563)
Q Consensus 327 a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~ 405 (563)
++++++||++++++.|. .|.+|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|++||++|+.+
T Consensus 428 ~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r~~~---- 502 (632)
T 3l84_A 428 AALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSRQKL---- 502 (632)
T ss_dssp HHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCSSCB----
T ss_pred HhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcCCCC----
Confidence 89999999999987776 6899999999999999999999999999999999999999998 78999999999864
Q ss_pred CCCCCCCCccccCce-EEEee--CCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHH--HHHHhccCCE
Q 008493 406 LPPGNKGIPLEVGKG-RILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL--IRSLAKSHEV 480 (563)
Q Consensus 406 ~p~~~~~~~~~~~k~-~~l~~--g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~--i~~~~~~~~~ 480 (563)
++.. ..+..+++++ +++++ |+|++||++|++++.|++|++.|+++||+++|||++|++|||++. +++.+.+ +.
T Consensus 503 ~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~~ 580 (632)
T 3l84_A 503 KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-GE 580 (632)
T ss_dssp CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-SE
T ss_pred CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-CC
Confidence 2321 1234567776 89999 899999999999999999999999999999999999999999874 5555555 78
Q ss_pred EEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHH
Q 008493 481 LITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 547 (563)
Q Consensus 481 vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~ 547 (563)
||++|++...||++. . . .++|+ |+|+.+|+.+++++++|||++.|++++++
T Consensus 581 vv~vE~~~~~g~~~~----------~----~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 581 VIGVEAAHSNELYKF----------C----H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp EEEECSSCCGGGGGT----------C----S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred EEEEeCChhhhHHHH----------h----C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 999999987777521 1 1 67998 99999999999999999999999999853
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.6e-78 Score=671.77 Aligned_cols=478 Identities=21% Similarity=0.292 Sum_probs=393.5
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+|+ ++|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++||+
T Consensus 113 l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Ea 192 (690)
T 3m49_A 113 LKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEA 192 (690)
T ss_dssp HTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHH
Confidence 468999998 559999988999999999999999999999999987653 789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+....... .++
T Consensus 193 l~~A~~~~L~~livI~dnN~-~~i~~~~~~~~~-------------------------------------~d~------- 227 (690)
T 3m49_A 193 SSLAAHLQLGRLVVLYDSND-ISLDGDLNRSFS-------------------------------------ESV------- 227 (690)
T ss_dssp HHHHHHTTCTTEEEEEEECS-BCSSSBGGGTCC-------------------------------------CCH-------
T ss_pred HHHHHHhCCCeEEEEEECCC-eecccchhhccc-------------------------------------hhH-------
Confidence 9999999965 888888888 676443321000 122
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
..++++|||++++++||||+++|.++++++++ ..++|++|+++|.||+|++. ++++..||+.+
T Consensus 228 ---------~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~-~~~~P~lI~v~T~kG~G~~~-~~~~~~~Hg~~~~~e~~ 296 (690)
T 3m49_A 228 ---------EDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKA-DEKRPTLIEVRTTIGFGSPN-KSGKSASHGSPLGVEET 296 (690)
T ss_dssp ---------HHHHHHHTCEEEEESCTTCHHHHHHHHHHHHH-CCSSCEEEEEECCTTTTCTT-TTTSGGGTSSCCCHHHH
T ss_pred ---------HHHHHHcCCcEEEEecCCCHHHHHHHHHHHHh-cCCCCEEEEEEeecccccCc-ccCcccccCCCCCHHHH
Confidence 23499999999977799999999999999986 24789999999999999976 44567899986
Q ss_pred -------------CCCCCCCc-------------------------------------------cCC----------CCc
Q 008493 223 -------------KFDPATGK-------------------------------------------QFK----------SSA 236 (563)
Q Consensus 223 -------------~f~~~~~~-------------------------------------------~~~----------~~~ 236 (563)
+|+..++. .++ ...
T Consensus 297 ~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~~~~~~~~~~~~~ 376 (690)
T 3m49_A 297 KLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELG 376 (690)
T ss_dssp HHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCTTGGGGCCCCCTT
T ss_pred HHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCchhhhhhccccccc
Confidence 46543220 000 011
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHHh-CCCCeeecccchHHHHHHHHHHhhC-CCeeEE
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR-FPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC 309 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~~-~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~ 309 (563)
++..+|++++++|.++++++|+++++++|+++|+++ .+|+++ +|+||+|+||+|++|+++|+|+|++ |+|||+
T Consensus 377 ~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~~ 456 (690)
T 3m49_A 377 SKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYG 456 (690)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCEEEE
Confidence 245789999999999999999999999999866543 356655 5899999999999999999999999 899999
Q ss_pred eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcC
Q 008493 310 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 388 (563)
Q Consensus 310 ~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~ 388 (563)
+||..|..++..++ ++++++++||++++++.|+ .|++|+|||+.+|++++|++||++|++|+|++|++.+|++|++..
T Consensus 457 ~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~ 535 (690)
T 3m49_A 457 GTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNESVAAWRLALEST 535 (690)
T ss_dssp EEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCS
T ss_pred EecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHHcC
Confidence 99877765455566 5689999999999999888 799999999999999999999999999999999999999999865
Q ss_pred CCCEEEEecCCCCCCccCCCCCCCCccccCceEEEeeCC----cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccc
Q 008493 389 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE----RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCK 464 (563)
Q Consensus 389 ~~P~~i~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g~----dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~ 464 (563)
++|++||++|+.++..........+.+++|+ +++++|+ |++||++|++++.|++|++.|+++||+++|||++|++
T Consensus 536 ~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~i~ 614 (690)
T 3m49_A 536 NKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMD 614 (690)
T ss_dssp SSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred CCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecccCC
Confidence 8999999999864321100000013456776 7899985 9999999999999999999999999999999999999
Q ss_pred cCcH---HHHHHHh-ccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHH
Q 008493 465 PLDH---ALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 540 (563)
Q Consensus 465 Pf~~---~~i~~~~-~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~ 540 (563)
|||. +.+.+++ ++++++|++|++...||. +++...+ ..+|+ |+|+.+|+.+++++++|||++.
T Consensus 615 p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~~~~l~~~~Glt~e~ 681 (690)
T 3m49_A 615 RFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAPGEKIMEEYGFTVEN 681 (690)
T ss_dssp HHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSCHHHHHHHTTCSHHH
T ss_pred cCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCCHHHHHHHHCcCHHH
Confidence 9985 4455555 357899999999866664 4443322 35787 9999999999999999999999
Q ss_pred HHHHHHHHh
Q 008493 541 IAATVFNIL 549 (563)
Q Consensus 541 I~~~i~~~~ 549 (563)
|+++|++++
T Consensus 682 I~~~i~~~l 690 (690)
T 3m49_A 682 VVRKVKEML 690 (690)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998864
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=3.2e-78 Score=668.50 Aligned_cols=476 Identities=20% Similarity=0.272 Sum_probs=392.6
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++ ++|||++..++++.+++|+||+++|+|+|+|+|.++++. +++|||++|||++++|++|||
T Consensus 89 l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Ea 168 (663)
T 3kom_A 89 IKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEA 168 (663)
T ss_dssp HTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHH
Confidence 468999998 579999888899999999999999999999999987653 789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+......
T Consensus 169 l~~A~~~~L~~livi~dnN~-~~i~~~~~~~~------------------------------------------------ 199 (663)
T 3kom_A 169 CSLAGTLGLNKLVAFWDDNN-ISIDGDTKGWF------------------------------------------------ 199 (663)
T ss_dssp HHHHHHHTCTTEEEEEEECC------CGGGTC------------------------------------------------
T ss_pred HHHHHHhCCCeEEEEEECCC-cccccchhhhc------------------------------------------------
Confidence 9999999976 888888888 67643321100
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
.+++..++++|||++++.+||||+++|.++++++++. .++|++|+++|.||+|++..+ +...||+.+
T Consensus 200 -----~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e-~~~~~Hg~~l~~e~~ 272 (663)
T 3kom_A 200 -----SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKA-GTASVHGSPLSDQER 272 (663)
T ss_dssp -----CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTT-TCSSTTSSCCCHHHH
T ss_pred -----chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCC-CCccccCCCCCHHHH
Confidence 1122344999999998788999999999999999862 478999999999999998865 446789874
Q ss_pred ------------CCCCCCC-----------c----------------------------cCCC---------------Cc
Q 008493 223 ------------KFDPATG-----------K----------------------------QFKS---------------SA 236 (563)
Q Consensus 223 ------------~f~~~~~-----------~----------------------------~~~~---------------~~ 236 (563)
+|+..++ + ++++ ..
T Consensus 273 ~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 352 (663)
T 3kom_A 273 ASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIASQLSNP 352 (663)
T ss_dssp HHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhhhhhccC
Confidence 4553321 0 0110 12
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHH-HhCCCCeeecccchHHHHHHHHHHhhC-CCeeEE
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC 309 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~-~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~ 309 (563)
+++.+|+|++++|.++++++|+++++++|+++|++. .+|+ ++||+||+|+||+|++|+++|+|+|++ |+|||+
T Consensus 353 ~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~ 432 (663)
T 3kom_A 353 VKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYGGIKPYG 432 (663)
T ss_dssp CCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred cchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcCCCEEEE
Confidence 345789999999999999999999999999877653 2574 899999999999999999999999999 999999
Q ss_pred eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcC
Q 008493 310 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 388 (563)
Q Consensus 310 ~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~ 388 (563)
++|++|+.++++||+ +++++++||++++++.|. .|.+|+|||+.+|+++++++||++|++|+|++|++.+++.|++..
T Consensus 433 ~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~ 511 (663)
T 3kom_A 433 GTFLVFSDYSRNAIR-MSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWKEAVKSK 511 (663)
T ss_dssp EEEGGGHHHHHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCS
T ss_pred EehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhC
Confidence 999999999999994 689999999999887766 689999999999999999999999999999999999999999867
Q ss_pred CCCEEEEecCCCCCCccCCCCCC-CCccccCceEEEee--CCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecccccc
Q 008493 389 DRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 465 (563)
Q Consensus 389 ~~P~~i~~~~~~~~~~~~p~~~~-~~~~~~~k~~~l~~--g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~P 465 (563)
++|++||++|+.++. ++.... .+.++.| .+++++ |+|++||++|++++.|++|++.|+++||+++|||++|++|
T Consensus 512 ~~Pv~ir~~r~~~p~--~~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si~p 588 (663)
T 3kom_A 512 DTPSVMVLTRQNLMP--VVQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEV 588 (663)
T ss_dssp SCCEEEECCSSEECC--CCCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred CCCEEEEccCccCCC--cCccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEEcCcCCc
Confidence 899999999976432 111000 0134445 478888 7899999999999999999999999999999999999999
Q ss_pred CcHHH---HHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHH
Q 008493 466 LDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIA 542 (563)
Q Consensus 466 f~~~~---i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~ 542 (563)
||++. +.++++....+|++|++...||.+.+ . + ..-..+|+ |+|+.+|+.+++++++|||++.|+
T Consensus 589 ~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~----g--G-----~~~~~igi-d~Fg~sg~~~~l~~~~Glt~e~I~ 656 (663)
T 3kom_A 589 FATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYM----P--K-----AGGEVKGI-YSFGESAPAEDLFKRFGFTVENIS 656 (663)
T ss_dssp HHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGC----C--T-----TCEEEECC-CSCCCSSCHHHHHHHHTCSHHHHH
T ss_pred ccccHHHHHHHhcCCCCeEEEEecCCcccHHHHh----c--c-----cCCcEEEe-cCCcCCCCHHHHHHHHCcCHHHHH
Confidence 99976 44456666689999998877776432 1 1 22367898 999999999999999999999999
Q ss_pred HHHHHH
Q 008493 543 ATVFNI 548 (563)
Q Consensus 543 ~~i~~~ 548 (563)
++++++
T Consensus 657 ~~~~~~ 662 (663)
T 3kom_A 657 NIVAKY 662 (663)
T ss_dssp HHHTTT
T ss_pred HHHHhh
Confidence 999764
No 8
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=3.2e-78 Score=670.55 Aligned_cols=474 Identities=22% Similarity=0.303 Sum_probs=382.1
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCC----------CCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~----------~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++ ++|||+...++.+.+++|+||+++|+|+|+|+|.++++. +++|||++|||++++|++||+
T Consensus 128 l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Ea 207 (711)
T 3uk1_A 128 LKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEA 207 (711)
T ss_dssp HHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHH
Confidence 358999997 679998877788899999999999999999999987653 789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+......
T Consensus 208 l~~A~~~~L~~livI~dnN~-~~i~~~~~~~~------------------------------------------------ 238 (711)
T 3uk1_A 208 CSLAGTLKLNKLIALYDDNG-ISIDGDVVNWF------------------------------------------------ 238 (711)
T ss_dssp HHHHHHTTCTTEEEEEEECS-EETTEEGGGTC------------------------------------------------
T ss_pred HHHHHHhCCCcEEEEEECCC-cccccchhhhc------------------------------------------------
Confidence 9999999976 888888888 67643221100
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
.+++..++++|||++++++||||+++|.++++++++ .++|++|+++|+||+|++..+ +...||+.+
T Consensus 239 -----~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~~e~~ 310 (711)
T 3uk1_A 239 -----HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA-GGHDVHGAPLGADEI 310 (711)
T ss_dssp -----CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------CHHHH
T ss_pred -----CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC-CcccccCCCCCHHHH
Confidence 112234499999999977899999999999999987 689999999999999997644 567899974
Q ss_pred ------------CCCCCC-----------Cc------------------------------cCCC---------------
Q 008493 223 ------------KFDPAT-----------GK------------------------------QFKS--------------- 234 (563)
Q Consensus 223 ------------~f~~~~-----------~~------------------------------~~~~--------------- 234 (563)
+|+..+ |+ .+++
T Consensus 311 ~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 390 (711)
T 3uk1_A 311 AKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANE 390 (711)
T ss_dssp HHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhhhhc
Confidence 465432 11 0111
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHHh---CC---CCeeecccchHHHHHHHHHHhhC
Q 008493 235 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR---FP---TRCFDVGIAEQHAVTFAAGLACE 303 (563)
Q Consensus 235 ~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~~---~p---~r~i~~gi~E~~~~~~a~G~a~~ 303 (563)
..+++.+|++++++|.++++++|+++++++|+++|+++ ..|+++ || +||+|+||+|++|+++|+|+|++
T Consensus 391 ~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~ 470 (711)
T 3uk1_A 391 RGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLH 470 (711)
T ss_dssp HCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence 02345678999999999999999999999999866543 368888 99 99999999999999999999995
Q ss_pred -CCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHH
Q 008493 304 -GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 381 (563)
Q Consensus 304 -G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l 381 (563)
|+|||+++|++|++++++||+ +++++++||++++++.|. .|++|+|||+.+|+++++++||++|++|+|++|++.++
T Consensus 471 ~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~~~l 549 (711)
T 3uk1_A 471 GGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAW 549 (711)
T ss_dssp SSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHHHHH
Confidence 999999999999999999995 579999999999988776 68999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCCCCccCCCCCC-CCccccCceEEEee--C----CcEEEEEechhHHHHHHHHHHHHhCCCc
Q 008493 382 ATAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--G----ERVALLGYGTAVQSCLAASALLESNGLR 454 (563)
Q Consensus 382 ~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~-~~~~~~~k~~~l~~--g----~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~ 454 (563)
+.|++ .++|++||++|+.++. ++.... .+.++.|+ +++++ | +|++||++|++++.|++|++.|+++||+
T Consensus 550 ~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~GI~ 625 (711)
T 3uk1_A 550 TYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIA 625 (711)
T ss_dssp HHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHTTEE
T ss_pred HHHHh-cCCCEEEEeeCCCCCC--CCCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHcCCC
Confidence 99998 7899999999986432 111100 13456666 67775 7 7999999999999999999999999999
Q ss_pred eEEeeccccccCcHHH--HHHH-hccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHH
Q 008493 455 LTVADARFCKPLDHAL--IRSL-AKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQL 531 (563)
Q Consensus 455 v~vi~~~~l~Pf~~~~--i~~~-~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll 531 (563)
++|||++|++|||++. +++. ++....+|++|++...||++.+ . .+..++|+ |+|+.+|+.++|+
T Consensus 626 ~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g--------~~~~~iGi-d~Fg~sg~~~~L~ 692 (711)
T 3uk1_A 626 ARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----G--------LEGGVVGI-DTFGESAPAGVLF 692 (711)
T ss_dssp EEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----T--------TTSEEECC-CSCCCSSCHHHHH
T ss_pred eEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----C--------CCceEEEe-CCCcCcCCHHHHH
Confidence 9999999999999875 3444 4444569999998888887443 2 12367997 8999999999999
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 008493 532 AQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 532 ~~~gl~~~~I~~~i~~~~ 549 (563)
+++|||++.|++++++++
T Consensus 693 ~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 693 KHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHTTCSHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHh
Confidence 999999999999999876
No 9
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-77 Score=662.59 Aligned_cols=470 Identities=21% Similarity=0.283 Sum_probs=399.3
Q ss_pred CCCCccCCCC-CCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g~-~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++. +|||++.+++++.+++|+||+++|+|+|+|+|.++++ .+++|||++|||++++|++||+
T Consensus 91 l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Ea 170 (651)
T 2e6k_A 91 LKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEA 170 (651)
T ss_dssp HTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHH
Confidence 4689999985 8999988889999999999999999999999988765 5899999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+......
T Consensus 171 l~~A~~~~L~~li~i~~nN~-~~i~~~~~~~~------------------------------------------------ 201 (651)
T 2e6k_A 171 ASLAGHWGLSKLIVFWDDNR-ISIDGPTDLAF------------------------------------------------ 201 (651)
T ss_dssp HHHHHHTTCTTEEEEEEECC-EETTEEGGGTC------------------------------------------------
T ss_pred HHHHHHcCCCeEEEEEECCC-ccccccccccc------------------------------------------------
Confidence 9999999966 999998888 66643221100
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
..++..++++|||++++.+||||++++.++++++++ .++|++|+++|.||+|++ .+++..||+.+
T Consensus 202 -----~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~--~~~~~~~H~~~~~~~e~ 272 (651)
T 2e6k_A 202 -----TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP--KQDSAKAHGEPLGPEAV 272 (651)
T ss_dssp -----CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST--TTTSGGGTSSCCHHHHH
T ss_pred -----CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc--ccccccccccCCCHHHH
Confidence 012234499999999878899999999999999987 689999999999999998 44567899876
Q ss_pred ------------CCCCCCCc-----------------------------------------cCCC-------CcccccHH
Q 008493 223 ------------KFDPATGK-----------------------------------------QFKS-------SARTQSYT 242 (563)
Q Consensus 223 ------------~f~~~~~~-----------------------------------------~~~~-------~~~~~~~~ 242 (563)
+|+..++. ..+. ..++.+++
T Consensus 273 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r 352 (651)
T 2e6k_A 273 EATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIATR 352 (651)
T ss_dssp HHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCHH
T ss_pred HHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHHH
Confidence 46543210 0000 01256789
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHH-hCCCCeeecccchHHHHHHHHHHhhCC-CeeEEeechhh
Q 008493 243 TYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSF 315 (563)
Q Consensus 243 ~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~-~~p~r~i~~gi~E~~~~~~a~G~a~~G-~~~~~~~~~~f 315 (563)
++++++|.++++++|+++++++|+++|+++ ..|++ +||+||+|+||+|++|+++|+|+|++| +|||++||++|
T Consensus 353 ~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F 432 (651)
T 2e6k_A 353 AASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVF 432 (651)
T ss_dssp HHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGG
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHH
Confidence 999999999999999999999999877654 45887 999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEE
Q 008493 316 MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF 394 (563)
Q Consensus 316 ~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i 394 (563)
+.++++|| ++++++++||++++++.|. .|++|+|||+.+|+++++.+||++|++|+|++|++.+++.|++..++|++|
T Consensus 433 ~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~i 511 (651)
T 2e6k_A 433 SDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTAL 511 (651)
T ss_dssp GGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEEE
Confidence 88888997 5689999999999877776 688999999999999999999999999999999999999999865899999
Q ss_pred EecCCCCCCccCCCCCCCCccccCceEEEeeC--CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHH--
Q 008493 395 RYPRGNGIGVELPPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL-- 470 (563)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~~~~~k~~~l~~g--~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~-- 470 (563)
+++|+.++. ++.. ....++.| .+++++| +|++||++|++++.|++|++.|+++||+++|||++|++|||++.
T Consensus 512 ~~~r~~~~~--~~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~ 587 (651)
T 2e6k_A 512 VLTRQAVPL--LSPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEA 587 (651)
T ss_dssp ECCSSCBCC--CCHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHH
T ss_pred EEeCCCCCC--CCcc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccccHH
Confidence 999986432 2210 01135556 5888887 89999999999999999999999999999999999999999984
Q ss_pred -HHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 471 -IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 471 -i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
+.+++++++++|++|++..+||++.+ + .++|+ |.|+++|+.+++++++|+|++.|++++++++
T Consensus 588 ~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~~~l 651 (651)
T 2e6k_A 588 YRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFLSLV 651 (651)
T ss_dssp HHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHHTTC
T ss_pred HHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 77777777889999999888887432 2 67998 8999999999999999999999999998753
No 10
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.8e-76 Score=659.61 Aligned_cols=472 Identities=23% Similarity=0.308 Sum_probs=401.5
Q ss_pred CCCCccCCCC-CCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g~-~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++. +|||++.+++++.+++|+||+++|+|+|+|+|.++++ ++++|||++|||++++|++||+
T Consensus 100 l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Ea 179 (675)
T 1itz_A 100 LKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEA 179 (675)
T ss_dssp HTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHH
Confidence 4689999985 8999998899999999999999999999999998765 6899999999999999999999
Q ss_pred HHhhcccCC-CEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~-pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++ |+++|++||+ +++.+......
T Consensus 180 l~~A~~~~L~~li~i~~nN~-~~i~~~~~~~~------------------------------------------------ 210 (675)
T 1itz_A 180 CSLAGHWGLGKLIAFYDDNH-ISIDGDTEIAF------------------------------------------------ 210 (675)
T ss_dssp HHHHHHTTCTTEEEEEEECS-EETTEEGGGTC------------------------------------------------
T ss_pred HHHHHHhCCCcEEEEEECCC-ccCCCChhhhc------------------------------------------------
Confidence 999999995 7999999998 66633221100
Q ss_pred HhccccCCCcchhhhcCceEeeccCCC-CHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~-d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~----- 222 (563)
..++..++++|||++++.+||| |++++.+++++|++. .++|++|+++|.||+|++.++ +...||+.+
T Consensus 211 -----~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~-~~~~~H~~~~~~e~ 283 (675)
T 1itz_A 211 -----TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA-NSYSVHGSALGAKE 283 (675)
T ss_dssp -----CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT-TSGGGTSSCCCHHH
T ss_pred -----ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc-CcccccCCCCCHHH
Confidence 1122344999999998788999 999999999999852 478999999999999998765 457899973
Q ss_pred -------------CCCCCCCc------------------------------c------------CC-----------CCc
Q 008493 223 -------------KFDPATGK------------------------------Q------------FK-----------SSA 236 (563)
Q Consensus 223 -------------~f~~~~~~------------------------------~------------~~-----------~~~ 236 (563)
+|+..++. . ++ +..
T Consensus 284 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 363 (675)
T 1itz_A 284 VEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPES 363 (675)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTS
T ss_pred HHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccCCchhhhhhhhhccCC
Confidence 46542210 0 00 112
Q ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHH-hCCCCeeecccchHHHHHHHHHHhhCC--CeeE
Q 008493 237 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPF 308 (563)
Q Consensus 237 ~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~-~~p~r~i~~gi~E~~~~~~a~G~a~~G--~~~~ 308 (563)
+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||+|+||+|++|+++|+|+|++| +|||
T Consensus 364 ~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~ 443 (675)
T 1itz_A 364 PGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPY 443 (675)
T ss_dssp CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEE
T ss_pred cchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHHHHHHHHhcCCCCEEE
Confidence 456789999999999999999999999999866654 24886 999999999999999999999999999 9999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
+++|++|+.++++|| ++++++++||++++++.|. .|.+|+|||+.+|+++++++||++|++|+|++|++.+++.|++.
T Consensus 444 ~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~ 522 (675)
T 1itz_A 444 CATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN 522 (675)
T ss_dssp EEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHC
T ss_pred EEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHh
Confidence 999999999999998 4589999999999987766 68899999999999999999999999999999999999999985
Q ss_pred CCCCEEEEecCCCCCCccCCCCCCCC-ccccCceEEEee---C--CcEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIE---G--ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~~~-~~~~~k~~~l~~---g--~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
.++|++|+++|+.++. ++. ..+ .+++| ++++++ | +|++||++|++++.|++|++.|+++||+++|||++
T Consensus 523 ~~~Pv~i~~~r~~~p~--~~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~ 597 (675)
T 1itz_A 523 RKRPSILALSRQKLPH--LPG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFV 597 (675)
T ss_dssp TTSCEEEEECSSCBCC--CTT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCcEEEEecCCCCCC--CCC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 5899999999986432 222 122 36677 688888 7 89999999999999999999999999999999999
Q ss_pred ccccCcHHH---HHHHhccC-CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCC
Q 008493 462 FCKPLDHAL---IRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLT 537 (563)
Q Consensus 462 ~l~Pf~~~~---i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~ 537 (563)
|++|||++. +.+++++. +++|++|++..+||++. +. .+..++|+ |.|+.+|+.+++++++|+|
T Consensus 598 ~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~----~~--------~~~~~ig~-d~fg~sg~~~~l~~~~gl~ 664 (675)
T 1itz_A 598 SWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKY----VG--------AQGKAIGI-DKFGASAPAGTIYKEYGIT 664 (675)
T ss_dssp CHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHH----HC--------SSCEEECC-CSCCCSSCHHHHHHHHTCS
T ss_pred cCcccccchHHHHHHHhccCCceEEEEECCccccHHHh----cC--------CCceEEEe-CCCCCCCCHHHHHHHHCcC
Confidence 999999884 66666664 78999999988888853 31 24578998 8999999999999999999
Q ss_pred HHHHHHHHHH
Q 008493 538 PSHIAATVFN 547 (563)
Q Consensus 538 ~~~I~~~i~~ 547 (563)
++.|++++++
T Consensus 665 ~~~I~~~i~~ 674 (675)
T 1itz_A 665 VESIIAAAKS 674 (675)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=2.8e-76 Score=658.06 Aligned_cols=477 Identities=20% Similarity=0.272 Sum_probs=400.1
Q ss_pred CCCCccCCCC-CCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g~-~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++. +|||+..+++++.+++|+||+++|+|+|+|+|.++.+ .+++|||++|||++++|++||+
T Consensus 87 l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Ea 166 (669)
T 2r8o_A 87 LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEV 166 (669)
T ss_dssp HTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHH
Confidence 4689999985 8999988889999999999999999999999988654 3789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+...... ..++
T Consensus 167 l~~A~~~~L~~li~i~~nN~-~~i~~~~~~~~-------------------------------------~~d~------- 201 (669)
T 2r8o_A 167 CSLAGTLKLGKLIAFYDDNG-ISIDGHVEGWF-------------------------------------TDDT------- 201 (669)
T ss_dssp HHHHHHTTCTTEEEEEEECS-EETTEEGGGTC-------------------------------------CCCH-------
T ss_pred HHHHHHcCCCcEEEEEECCC-cEecccccccc-------------------------------------CccH-------
Confidence 9999999966 999998888 66643221100 0122
Q ss_pred HhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC------
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA------ 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~------ 222 (563)
..++++|||+++..+||||++++.++++++++ ..++|++|+++|.||+|++..+ ++..||+.+
T Consensus 202 ---------~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~T~kg~G~~~~~-~~~~~H~~~~~~ee~ 270 (669)
T 2r8o_A 202 ---------AMRFEAYGWHVIRDIDGHDAASIKRAVEEARA-VTDKPSLLMCKTIIGFGSPNKA-GTHDSHGAPLGDAEI 270 (669)
T ss_dssp ---------HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH-CCSSCEEEEEECCTTTTCTTTT-TSGGGTSSCCCHHHH
T ss_pred ---------HHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeEeccCcCCcC-CCCcccCCCCCHHHH
Confidence 23499999999878899999999999999986 2478999999999999998644 446889862
Q ss_pred ------------CCCCCCC-----------c------------------------------cCC---------------C
Q 008493 223 ------------KFDPATG-----------K------------------------------QFK---------------S 234 (563)
Q Consensus 223 ------------~f~~~~~-----------~------------------------------~~~---------------~ 234 (563)
+|+..++ + .++ +
T Consensus 271 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 350 (669)
T 2r8o_A 271 ALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQA 350 (669)
T ss_dssp HHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhhhcC
Confidence 4544221 0 111 1
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeE
Q 008493 235 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPF 308 (563)
Q Consensus 235 ~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~ 308 (563)
..++.+++++++++|.++++.+|+++++++|++.|+++ ..|+++||+||+|+||+|++|+++|+|+|++ |+|||
T Consensus 351 ~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~ 430 (669)
T 2r8o_A 351 NPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPY 430 (669)
T ss_dssp SCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence 12456789999999999999999999999999866554 3688899999999999999999999999999 89999
Q ss_pred EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc
Q 008493 309 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 387 (563)
Q Consensus 309 ~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~ 387 (563)
+.+|++|+.++++||+ +++++++||++++++.|. .|++|+|||+.+|+++++.+||++|++|+|++|++.+++.|++.
T Consensus 431 ~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~ 509 (669)
T 2r8o_A 431 TSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER 509 (669)
T ss_dssp EEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred EeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh
Confidence 9999999999999985 489999999999987776 68899999999999999999999999999999999999999986
Q ss_pred CCCCEEEEecCCCCCCccCCCCCCC-CccccCceEEEee--C-CcEEEEEechhHHHHHHHHHHHHhCCCceEEeecccc
Q 008493 388 DDRPSCFRYPRGNGIGVELPPGNKG-IPLEVGKGRILIE--G-ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFC 463 (563)
Q Consensus 388 ~~~P~~i~~~~~~~~~~~~p~~~~~-~~~~~~k~~~l~~--g-~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l 463 (563)
.++|++|+++|+.++. ++..... ..+++| .+++++ | +|++||++|++++.|++|++.|+++||+++|||++|+
T Consensus 510 ~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~ 586 (669)
T 2r8o_A 510 QDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPST 586 (669)
T ss_dssp SSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCH
T ss_pred CCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEeccC
Confidence 5899999999986432 2221000 125667 488888 7 8999999999999999999999999999999999999
Q ss_pred ccCcHH---HHHHHhccC-CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHH
Q 008493 464 KPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPS 539 (563)
Q Consensus 464 ~Pf~~~---~i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~ 539 (563)
+|||++ ++.+++++. +++|++|++..+||++ ++.+++ .++|+ +.|+.+|+.+++++++|||++
T Consensus 587 ~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~Gl~~~ 653 (669)
T 2r8o_A 587 DAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEFGFTVD 653 (669)
T ss_dssp HHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHTTCSHH
T ss_pred CccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHhCCCHH
Confidence 999988 477777764 7899999987788874 444331 46888 699999999999999999999
Q ss_pred HHHHHHHHHhc
Q 008493 540 HIAATVFNILG 550 (563)
Q Consensus 540 ~I~~~i~~~~~ 550 (563)
.|++++++++.
T Consensus 654 ~I~~~~~~~~~ 664 (669)
T 2r8o_A 654 NVVAKAKELLH 664 (669)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=7.5e-76 Score=653.62 Aligned_cols=472 Identities=20% Similarity=0.252 Sum_probs=400.0
Q ss_pred CCCCccCCC-CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g-~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+++ ++|||++..++++.+++|+||+++|+|+|+|+|.++++ .+++|||++|||++++|++|||
T Consensus 89 l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Ea 168 (673)
T 1r9j_A 89 LKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEA 168 (673)
T ss_dssp HHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHH
Confidence 358999997 67999988889999999999999999999999998765 5889999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+...... ..++.
T Consensus 169 l~~A~~~~L~~li~i~d~N~-~~i~~~~~~~~-------------------------------------~~d~~------ 204 (673)
T 1r9j_A 169 LSLAGHLALEKLIVIYDSNY-ISIDGSTSLSF-------------------------------------TEQCH------ 204 (673)
T ss_dssp HHHHHHHTCTTEEEEEEECS-BCSSSBGGGTC-------------------------------------CCCHH------
T ss_pred HHHHHHhCCCcEEEEEECCC-Cccccchhhcc-------------------------------------CHhHH------
Confidence 9999999965 999999998 67643322100 01223
Q ss_pred HhccccCCCcchhhhcCceEeeccCC-CCHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG-~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~----- 222 (563)
.++++|||+++..+|| ||++++.+|+++|++. .++|++|+++|.||+|++ .++...||+.+
T Consensus 205 ----------~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~--~~~~~~~H~~~~~~ee 271 (673)
T 1r9j_A 205 ----------QKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS--KQGTEKVHGAPLGEED 271 (673)
T ss_dssp ----------HHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST--TTTSGGGTSSCCCHHH
T ss_pred ----------HHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc--cCCCcccccCCCCHHH
Confidence 3499999999878899 9999999999998852 578999999999999998 34557889863
Q ss_pred --------------CCCCCCC------------c------------------------------cCCCC--------ccc
Q 008493 223 --------------KFDPATG------------K------------------------------QFKSS--------ART 238 (563)
Q Consensus 223 --------------~f~~~~~------------~------------------------------~~~~~--------~~~ 238 (563)
+|...++ + .++.. .++
T Consensus 272 ~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~~~~~ 351 (673)
T 1r9j_A 272 IANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTNSSA 351 (673)
T ss_dssp HHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCCCCSC
T ss_pred HHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccccccc
Confidence 2322110 0 00100 134
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcChH--H-----HHH-hCCCCeeecccchHHHHHHHHHHhhC-CCeeEE
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN--L-----FLR-RFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC 309 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~~--~-----~~~-~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~ 309 (563)
.+++++++++|.++++++|+++++++|+++|+++. + |++ +||+|++|+||+|++|+++|+|+|++ |++||+
T Consensus 352 ~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~~P~~ 431 (673)
T 1r9j_A 352 IATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIPFG 431 (673)
T ss_dssp EEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999999999999999999999998666542 3 787 99999999999999999999999999 599999
Q ss_pred eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcC
Q 008493 310 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 388 (563)
Q Consensus 310 ~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~ 388 (563)
++|++|+.++++||+ +++++++||++++++.|. .|++|+|||+.+|+++++++||++|++|+|++|++.+++.|++..
T Consensus 432 ~~~~~F~~~~~~~ir-~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~ 510 (673)
T 1r9j_A 432 GTFLNFIGYALGAVR-LAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSI 510 (673)
T ss_dssp EEEGGGGGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCT
T ss_pred EehHHHHHHHHHHHH-HHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhC
Confidence 999999999999985 589999999999987776 688999999999999999999999999999999999999999866
Q ss_pred CCCEEEEecCCCCCCccCCCCCCCC-ccccCceEEEeeC--CcEEEEEechhHHHHHHHHHHHHhCCCceEEeecccccc
Q 008493 389 DRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 465 (563)
Q Consensus 389 ~~P~~i~~~~~~~~~~~~p~~~~~~-~~~~~k~~~l~~g--~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~P 465 (563)
++|++|+++|+..+. ++. ..+ .+++| ++++++| +|++||++|++++.|++|++.|+++ |+++|||++|++|
T Consensus 511 ~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~sl~p 584 (673)
T 1r9j_A 511 HTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQEL 584 (673)
T ss_dssp TCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHH
T ss_pred CCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCCCCch
Confidence 899999999986432 222 122 36677 6889988 8999999999999999999999988 9999999999999
Q ss_pred CcHHH---HHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHH
Q 008493 466 LDHAL---IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIA 542 (563)
Q Consensus 466 f~~~~---i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~ 542 (563)
||++. +.+++++++++|++|++..+||++.+ ++. +|+ |.|+.+|+.+++++++|+|++.|+
T Consensus 585 ld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~~~~I~ 648 (673)
T 1r9j_A 585 FDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGITVEEVV 648 (673)
T ss_dssp HHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCSHHHHH
T ss_pred hhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcCHHHHH
Confidence 99984 88899988889999999888887432 223 888 899999999999999999999999
Q ss_pred HHHHHHhccc
Q 008493 543 ATVFNILGQT 552 (563)
Q Consensus 543 ~~i~~~~~~~ 552 (563)
++|++++++.
T Consensus 649 ~~i~~~l~~~ 658 (673)
T 1r9j_A 649 RTGRELAKRF 658 (673)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999998553
No 13
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=4.2e-75 Score=648.97 Aligned_cols=472 Identities=21% Similarity=0.271 Sum_probs=396.4
Q ss_pred CCCCccCCCC-CCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~~~g~-~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+|||+||. +|||++ +++++.+++|++|+++|+|+|+|+|.++.+ .+++|||++|||++++|++||+
T Consensus 90 l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Ea 168 (680)
T 1gpu_A 90 LKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEA 168 (680)
T ss_dssp HTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHH
T ss_pred HHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHH
Confidence 4689999985 999998 889999999999999999999999988664 3789999999999999999999
Q ss_pred HHhhcccCCC-EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHH
Q 008493 70 MNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 148 (563)
Q Consensus 70 l~~a~~~~~p-li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (563)
+++|+.+++| +++|++||+ +++.+...... ..++
T Consensus 169 l~~A~~~~L~~li~i~~nN~-~~i~~~~~~~~-------------------------------------~~d~------- 203 (680)
T 1gpu_A 169 SSLAGHLKLGNLIAIYDDNK-ITIDGATSISF-------------------------------------DEDV------- 203 (680)
T ss_dssp HHHHHHTTCTTEEEEEEECS-EETTEEGGGTC-------------------------------------CCCH-------
T ss_pred HHHHHHhCCCcEEEEEECCC-ceEeccccccc-------------------------------------CccH-------
Confidence 9999999976 999998888 67643221100 0122
Q ss_pred HhccccCCCcchhhhcCceEeeccCCC-CHHHHHHHHHHHhccCCCCcEEEEEEecccCCcchhhhccccccCCC-----
Q 008493 149 ARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 222 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~G~~~~~~~dG~-d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~~~~~~~~~~~h~~~----- 222 (563)
..++++|||++++.+||| |++++.+++++|++ ..++|++|+++|.||+|++ .++...||+.+
T Consensus 204 ---------~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~-~~~~P~lI~~~T~kg~G~~--~~~~~~~H~~~~~~ee 271 (680)
T 1gpu_A 204 ---------AKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL-SKDKPTLIKMTTTIGYGSL--HAGSHSVHGAPLKADD 271 (680)
T ss_dssp ---------HHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH-CTTSCEEEEEECCTTTTST--TTTSGGGSSSCCCHHH
T ss_pred ---------HHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH-CCCCCEEEEEEeecccccc--cCCCCccCCCCCCHHH
Confidence 234999999998788999 99999999999986 2578999999999999998 33456789875
Q ss_pred --------------CCCCCCCc-------------------------------------------cCC-----------C
Q 008493 223 --------------KFDPATGK-------------------------------------------QFK-----------S 234 (563)
Q Consensus 223 --------------~f~~~~~~-------------------------------------------~~~-----------~ 234 (563)
+|+..++. .++ +
T Consensus 272 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~ 351 (680)
T 1gpu_A 272 VKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTA 351 (680)
T ss_dssp HHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSCCCCT
T ss_pred HHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhchhhcc
Confidence 45542210 000 0
Q ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-----HHHHH------hCCCCeeecccchHHHHHHHHHHhhC
Q 008493 235 SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR------RFPTRCFDVGIAEQHAVTFAAGLACE 303 (563)
Q Consensus 235 ~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-----~~~~~------~~p~r~i~~gi~E~~~~~~a~G~a~~ 303 (563)
..+..+++++++++|.++++++|+++++++|++.|+++ ..|++ +||+||+|+||+|++|+++|+|+|++
T Consensus 352 ~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~ 431 (680)
T 1gpu_A 352 KDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAF 431 (680)
T ss_dssp TSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHHHHhc
Confidence 13456789999999999999999999999999866543 35777 99999999999999999999999999
Q ss_pred C-Ce-eEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC-CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHH
Q 008493 304 G-LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHM 380 (563)
Q Consensus 304 G-~~-~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~ 380 (563)
| +| ||+++|++|+.++++||+ +++++++||++++++.|. .|++|+|||+.+|+++++++||++|++|+|++|++.+
T Consensus 432 Gg~~~P~~~~f~~F~~~~~~air-~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~ 510 (680)
T 1gpu_A 432 GANYKPYGGTFLNFVSYAAGAVR-LSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAA 510 (680)
T ss_dssp CTTCEEEEEEEHHHHGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHHH
T ss_pred CCCceEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHH
Confidence 8 99 999999999999999985 589999999999987776 6889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEecCCCCCCccCCCCCCCCc-cccCceEEEeeC--CcEEEEEechhHHHHHHHHHHHHhCCCceEE
Q 008493 381 VATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIP-LEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTV 457 (563)
Q Consensus 381 l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~~-~~~~k~~~l~~g--~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~v 457 (563)
++.|++..++|++||++|+.++. ++. ..+. +++| .+++++| +|++||++|++++.|++|++.|+++||+++|
T Consensus 511 l~~A~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi~~~V 585 (680)
T 1gpu_A 511 YKNSLESKHTPSIIALSRQNLPQ--LEG--SSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNIKARV 585 (680)
T ss_dssp HHHHHHCSSCCEEEECCSSCBCC--CTT--CCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHhCCCcEEEEecCCCCCC--CCC--cchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999855899999999986432 222 1223 5667 4889988 8999999999999999999999999999999
Q ss_pred eeccccccCcHH---HHHHHhccC-CEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHH
Q 008493 458 ADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQ 533 (563)
Q Consensus 458 i~~~~l~Pf~~~---~i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~ 533 (563)
||++|++|||++ .+.+++++. +. |++|++..+||++++. . ++++ +.|+.+|+.++++++
T Consensus 586 vd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v~--------------~-~~gv-~~f~~~g~~~~l~~~ 648 (680)
T 1gpu_A 586 VSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYAH--------------Q-SFGI-DRFGASGKAPEVFKF 648 (680)
T ss_dssp EECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTCS--------------E-EECC-CSCCCCSCHHHHHHH
T ss_pred EEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhcC--------------c-ceee-CcCCCCCCHHHHHHH
Confidence 999999999998 465666654 55 9999998788874321 1 2776 789999999999999
Q ss_pred cCCCHHHHHHHHHHHhcccc
Q 008493 534 AGLTPSHIAATVFNILGQTR 553 (563)
Q Consensus 534 ~gl~~~~I~~~i~~~~~~~~ 553 (563)
+|+|++.|+++|+++++..+
T Consensus 649 ~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 649 FGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp TTCSHHHHHHHHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHHHhhc
Confidence 99999999999999986544
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=3.9e-70 Score=616.66 Aligned_cols=530 Identities=18% Similarity=0.190 Sum_probs=398.8
Q ss_pred CCCCcc---CCCCCCCCCCCCCCC-cccCCCCCchhhHHHHHHHHhhhh-------cCCCCcEEEEEcccccccchhHHH
Q 008493 1 MHTMRQ---TDGLSGFTKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEA 69 (563)
Q Consensus 1 ~~~~r~---~~g~~g~~~~~~~~~-~~~~~g~~G~~l~~a~G~A~A~~~-------~~~~~~vv~~~GDG~~~~G~~~Ea 69 (563)
|.+||| .+|++|||++.++|+ +.|++|+||+++++|+|+|+|.++ .+.+++||||+|||++++|++|||
T Consensus 162 l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EA 241 (886)
T 2qtc_A 162 LDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGA 241 (886)
T ss_dssp HTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTT
T ss_pred HHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHH
Confidence 578999 568999999988897 999999999999999999999997 677899999999999999999999
Q ss_pred HHhhcccCC-CEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHH----Hhhhhhcc-CCchHHHHH
Q 008493 70 MNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREV----AKGVTKQI-GGPMHELAA 143 (563)
Q Consensus 70 l~~a~~~~~-pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~ 143 (563)
+++|+.+++ |++|||+||+ ++++ +++...+.+...+++.+...+|+.++.. .+.++..+ +..+.....
T Consensus 242 l~~A~~~~L~nli~Vvn~N~-~si~-----~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~ 315 (886)
T 2qtc_A 242 ITIATREKLDNLVFVINCNL-QRLD-----GPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMN 315 (886)
T ss_dssp HHHHHHTTCTTEEEEEEECS-BCSS-----SBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEECCC-cccC-----CCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHH
Confidence 999999995 7999999999 6773 3333222344555555544454433210 01111111 111111111
Q ss_pred HHH------------HHHhccccCC---Ccchhhhc---CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 144 KVD------------EYARGMISGS---GSTLFEEL---GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 144 ~~~------------~~~~~~~~~~---~~~~~~~~---G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+.. .++|+.++.+ ...+++.+ |++++ .+||||+++|.+|+++|++. .++|++|+++|+||
T Consensus 316 ~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG 393 (886)
T 2qtc_A 316 ETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKG 393 (886)
T ss_dssp HCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTT
T ss_pred hccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeec
Confidence 111 1233322221 12223333 77888 88999999999999999873 46899999999999
Q ss_pred CCcchhhhccccccCCC--------------------------CCCCCCCc----------------cC-----------
Q 008493 206 RGYPYAEKAADKYHGVA--------------------------KFDPATGK----------------QF----------- 232 (563)
Q Consensus 206 ~g~~~~~~~~~~~h~~~--------------------------~f~~~~~~----------------~~----------- 232 (563)
+|+++++++...+|+.. +|+..++. .+
T Consensus 394 ~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~ 473 (886)
T 2qtc_A 394 YGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKL 473 (886)
T ss_dssp TTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCC
T ss_pred cccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcc
Confidence 99987666778899873 45433210 01
Q ss_pred --CC----------CcccccHHHHHHHHHHHHHhcC---CCEEEEecCCCC---C------cCh-----HHHH-------
Q 008493 233 --KS----------SARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGG---G------TGL-----NLFL------- 276 (563)
Q Consensus 233 --~~----------~~~~~~~~~a~~~~l~~~~~~~---~~v~~~~~D~~~---s------~~~-----~~~~------- 276 (563)
+. ..+..+++++++++|.++++++ ++|+++++|+.. + +++ ..|.
T Consensus 474 ~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~ 553 (886)
T 2qtc_A 474 ELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQV 553 (886)
T ss_dssp CCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-------------
T ss_pred cCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhh
Confidence 10 1234678999999999999998 999999999543 2 221 3343
Q ss_pred ----HhCCCCeeecccchHHH-H---HHHHHHhhCC--CeeEEeechhh-HHHHHHHHHHHhccCCCCeEEEEeCCCC-C
Q 008493 277 ----RRFPTRCFDVGIAEQHA-V---TFAAGLACEG--LKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-V 344 (563)
Q Consensus 277 ----~~~p~r~i~~gi~E~~~-~---~~a~G~a~~G--~~~~~~~~~~f-~~~a~dqi~~~a~~~~~pv~~v~~~~G~-~ 344 (563)
+.||+|++|+||+|+++ + ++|+|+|++| ++||+.+|++| ++|++||+++++++++.++++.+..++. .
T Consensus 554 ~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~ 633 (886)
T 2qtc_A 554 AYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTL 633 (886)
T ss_dssp ----CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTS
T ss_pred hhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccC
Confidence 68899999999999995 5 6999999999 89999999999 6999999999999999999997764433 5
Q ss_pred CCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCC----EEEEecCCC--CCCccCCCCCCCCccccC
Q 008493 345 GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP----SCFRYPRGN--GIGVELPPGNKGIPLEVG 418 (563)
Q Consensus 345 g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P----~~i~~~~~~--~~~~~~p~~~~~~~~~~~ 418 (563)
|.+|+|||+.+++++++++||++|++|+|++|+..+++.|++..++| +++++++.. +....+|+. ....+ ++
T Consensus 634 g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~-~~~~~-~g 711 (886)
T 2qtc_A 634 NGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEG-AEEGI-RK 711 (886)
T ss_dssp TTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTT-CHHHH-HH
T ss_pred CCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcc-hhhhc-cC
Confidence 88999999999999999999999999999999999999999865679 999999864 211123321 01223 78
Q ss_pred ceEEEeeC----CcEEEEEechhHHHHHHHHHHHHhC-CCceEEeeccccccCcHHH-------------------HHHH
Q 008493 419 KGRILIEG----ERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHAL-------------------IRSL 474 (563)
Q Consensus 419 k~~~l~~g----~dv~iv~~G~~~~~~~~Aa~~L~~~-Gi~v~vi~~~~l~Pf~~~~-------------------i~~~ 474 (563)
+++++++| +|++||++|+++++|++|++.|+++ ||+++|||++|++|||+++ +.+.
T Consensus 712 ga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~ 791 (886)
T 2qtc_A 712 GIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQV 791 (886)
T ss_dssp TCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHH
T ss_pred ceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHh
Confidence 88999987 7999999999999999999999998 9999999999999999875 4555
Q ss_pred hccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCC-CceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 475 AKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGT-VKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 475 ~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
+.. ..+|++|++.. |+++.+..++ + .++.++|+ |.|+.+|+.+++++++|+|++.|++++++++..
T Consensus 792 l~~-~~vVa~ed~~~-g~~~~~~~~~--------~~~~~~~lG~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~ 858 (886)
T 2qtc_A 792 MND-APAVASTDYMK-LFAEQVRTYV--------PADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAK 858 (886)
T ss_dssp CCS-SCEEEECSSCT-HHHHTTGGGC--------CSSCEEEECC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred cCC-CCEEEEEeccc-chHHHHHHHc--------CCCCeEEEEe-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 655 67888888765 5554443333 3 57888998 899999999999999999999999999998854
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=7.9e-58 Score=506.38 Aligned_cols=479 Identities=14% Similarity=0.149 Sum_probs=370.5
Q ss_pred CccCCCCCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccch---hHHHHHhhcccC-CC
Q 008493 4 MRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQ---AYEAMNNAGYLD-SD 79 (563)
Q Consensus 4 ~r~~~g~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~---~~Eal~~a~~~~-~p 79 (563)
|++.||++|||.+ ++|.....+|.+|++++.|+|+|+.. ++.+|+|++|||+.++|. .||+.+++..++ .|
T Consensus 153 fs~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~~~----~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~n 227 (845)
T 3ahc_A 153 FSYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVMNN----PSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGI 227 (845)
T ss_dssp BTCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHTTC----TTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCE
T ss_pred ccCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhhcC----CCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCC
Confidence 4444679999965 68899999999999999999999754 488999999999999999 999999999988 89
Q ss_pred EEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcc
Q 008493 80 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 159 (563)
Q Consensus 80 li~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (563)
|+.|+++|+ ++++. ++. ...+ +.+++.++
T Consensus 228 l~~i~D~N~-~~i~g-----~t~-l~~~-----------------------------~~e~l~~r--------------- 256 (845)
T 3ahc_A 228 VLPILHLNG-YKIAN-----PTI-LARI-----------------------------SDEELHDF--------------- 256 (845)
T ss_dssp EEEEEEECS-BSSSS-----BCH-HHHS-----------------------------CHHHHHHH---------------
T ss_pred EEEEEECCC-CcCCC-----Ccc-cccc-----------------------------CcHHHHHH---------------
Confidence 999999999 66632 211 0000 12456655
Q ss_pred hhhhcCceEeeccCC-C--CHHHHHHHHHH---------------HhccCCCCc--EEEEEEecccC-------Ccchhh
Q 008493 160 LFEELGLYYIGPVDG-H--NVDDLVAILEE---------------VKNTKTTGP--VLIHVVTEKGR-------GYPYAE 212 (563)
Q Consensus 160 ~~~~~G~~~~~~~dG-~--d~~~l~~a~~~---------------a~~~~~~~P--~~I~v~t~~g~-------g~~~~~ 212 (563)
+++|||+++..+|| | |++++.+++.+ |++...++| ++|.++|.||+ |.+ .|
T Consensus 257 -f~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~e 334 (845)
T 3ahc_A 257 -FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TE 334 (845)
T ss_dssp -HHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CT
T ss_pred -HHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cC
Confidence 99999998757799 9 99998877642 222113689 99999999999 884 44
Q ss_pred hccccccCCCC-------------------------CCC------------CCCc------------c------CCCC--
Q 008493 213 KAADKYHGVAK-------------------------FDP------------ATGK------------Q------FKSS-- 235 (563)
Q Consensus 213 ~~~~~~h~~~~-------------------------f~~------------~~~~------------~------~~~~-- 235 (563)
+...||+.+. |+. .++. . ++..
T Consensus 335 -g~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~ 413 (845)
T 3ahc_A 335 -GSWRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQ 413 (845)
T ss_dssp -TSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGG
T ss_pred -CCccccCCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHh
Confidence 4468898752 221 0000 0 0000
Q ss_pred -----------c-ccccHHHHHHHHHHHHHhcCCC-EEEEecCCCCCcChHHHHHh---------C--C--------CCe
Q 008493 236 -----------A-RTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLFLRR---------F--P--------TRC 283 (563)
Q Consensus 236 -----------~-~~~~~~~a~~~~l~~~~~~~~~-v~~~~~D~~~s~~~~~~~~~---------~--p--------~r~ 283 (563)
. ....-+.+++++|.++++.+|+ ++++++|+.+|+++..|.+. + | +||
T Consensus 414 ~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~ 493 (845)
T 3ahc_A 414 YEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQV 493 (845)
T ss_dssp GCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSE
T ss_pred hhccccccccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcE
Confidence 0 0112367888999999999999 99999999999988777766 6 7 899
Q ss_pred eecccchHHHHHHHHHHhhCCCeeEEeechhhH---HHHHHH----HHHHhccC----CC-CeEEEEeCCCC-CCCCCCC
Q 008493 284 FDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQ----VVHDVDLQ----KL-PVRFAMDRAGL-VGADGPT 350 (563)
Q Consensus 284 i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~---~~a~dq----i~~~a~~~----~~-pv~~v~~~~G~-~g~~G~t 350 (563)
|+ ||+|++|+++++|++++|.++|+.+|++|+ .++++| +++..+.+ .. +|+++++|.|+ .|++|+|
T Consensus 494 i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpT 572 (845)
T 3ahc_A 494 TE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFS 572 (845)
T ss_dssp EE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGG
T ss_pred ee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCC
Confidence 99 999999999999999999999999988887 799999 87662332 34 79999999988 7999999
Q ss_pred CCCh--hhhhhhh---cCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCCC---ccccCceEE
Q 008493 351 HCGS--FDVTFMA---CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI---PLEVGKGRI 422 (563)
Q Consensus 351 H~~~--~d~~~~~---~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~~---~~~~~k~~~ 422 (563)
||+. .|+...+ .+||++|+.|+|+.|+..+++.|++..+.|.++.++|++++.. .. ..+ .+..|++.+
T Consensus 573 HQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~--~~--~~~a~~~~~~G~~v~ 648 (845)
T 3ahc_A 573 HQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTW--VT--LDEARAELEAGAAEW 648 (845)
T ss_dssp GCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEEC--SC--HHHHHHHHHHSEEEC
T ss_pred CCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--CC--chhhhhhhcCCeEEE
Confidence 9994 4544444 6799999999999999999999998555555555599874432 11 111 244565544
Q ss_pred E---ee--C--CcEEEEEechhH-HHHHHHHHHHHhCCCceEEeecccc---ccCcHHHHHHHhccCCEEEEEeCCC---
Q 008493 423 L---IE--G--ERVALLGYGTAV-QSCLAASALLESNGLRLTVADARFC---KPLDHALIRSLAKSHEVLITVEEGS--- 488 (563)
Q Consensus 423 l---~~--g--~dv~iv~~G~~~-~~~~~Aa~~L~~~Gi~v~vi~~~~l---~Pf~~~~i~~~~~~~~~vvvvE~~~--- 488 (563)
. ++ | .|++||++|+++ .+|++|++.|+++||+++||+++++ +|.+++.+....+.++.|+++|++.
T Consensus 649 ~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~ 728 (845)
T 3ahc_A 649 KWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFA 728 (845)
T ss_dssp TTTCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEE
T ss_pred EeecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceee
Confidence 4 35 4 799999999765 5699999999999999999999999 5554432222223446677778775
Q ss_pred CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 489 IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 489 ~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
.+|+++.|++.+.++. .+.++.++|+++ ++.++++.++++++|||.+.|++++++++.
T Consensus 729 ~gGlgsaV~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 729 YHSYAQDVRGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp ESSCHHHHHHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 4999999999998762 246899999998 999999999999999999999999999887
No 16
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=4.3e-58 Score=476.30 Aligned_cols=338 Identities=24% Similarity=0.297 Sum_probs=243.5
Q ss_pred EecccCCcch-hhhccccccCCCCCCCCCCccCCC-C--cccccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----Ch
Q 008493 201 VTEKGRGYPY-AEKAADKYHGVAKFDPATGKQFKS-S--ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GL 272 (563)
Q Consensus 201 ~t~~g~g~~~-~~~~~~~~h~~~~f~~~~~~~~~~-~--~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~----~~ 272 (563)
.|.||+||.+ ++++.+.||+..|| +++|+.... . ..+++|+++++++|.+++++|++++++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6899999999 99888999999999 999874322 1 14568999999999999999999999999997332 24
Q ss_pred HHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe-echhhHHHHHHHHHHHhccC--------CCCeEEEEeCCC
Q 008493 273 NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAG 342 (563)
Q Consensus 273 ~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~~~~f~~~a~dqi~~~a~~~--------~~pv~~v~~~~G 342 (563)
..|+++| |+||+|+||+|++|+++|+|+|++|+||+++ +|++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 7899999 9999999999999999999999999999998 59999999999999988866 999999999888
Q ss_pred CCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCC--ccCCCCCCCCccccCce
Q 008493 343 LVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKG 420 (563)
Q Consensus 343 ~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~--~~~p~~~~~~~~~~~k~ 420 (563)
..+ +|++||+.. .++++.+||++|++|+|++|++.++++|++ .++|++|++++..... ..+|. ..+.+++|++
T Consensus 169 ~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 555 788888886 589999999999999999999999999998 7899999988765321 22332 2355788999
Q ss_pred EEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHH
Q 008493 421 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQF 499 (563)
Q Consensus 421 ~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~ 499 (563)
+++++|+|++|||+|++++.|++|++.|+ | +++|||+++++|||++.+.+++++++++|++|++. .|||+++|++.
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999996 8 99999999999999999999998888999999986 79999999999
Q ss_pred HHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 500 LAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+.++++..+..++.+++++|.|+++|+ +++++|+|++.|+++|+++++
T Consensus 321 l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 321 VAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 998875334578999999999999886 889999999999999999874
No 17
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.3e-56 Score=508.16 Aligned_cols=458 Identities=15% Similarity=0.144 Sum_probs=346.3
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcC-----CCCcEEEEEccccc-ccchhHHHHHhhcccCCC---EEEEEeCCCCcccCc
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPT 94 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~-----~~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~p---li~iv~nN~~~s~~t 94 (563)
+..+|+|+++|.|+|+|+|.++.+ .+..+||++|||++ ++|++||+||+|+.|++| +|+||+||+ ++++|
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 567999999999999999998874 57799999999998 899999999999999999 999999999 77755
Q ss_pred -ccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccC
Q 008493 95 -ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD 173 (563)
Q Consensus 95 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d 173 (563)
...+... .++...+++++||+++ .+|
T Consensus 397 ~~~~~~~~----------------------------------------------------~~~~~~~a~a~g~p~~-~Vd 423 (933)
T 2jgd_A 397 SNPLDARS----------------------------------------------------TPYCTDIGKMVQAPIF-HVN 423 (933)
T ss_dssp --------------------------------------------------------------CGGGGGGTTTCCEE-EEE
T ss_pred CCHHhccc----------------------------------------------------chhHHHHHHHcCCCEE-EEC
Confidence 3322100 0122345899999987 669
Q ss_pred CCCHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc------------------------------------
Q 008493 174 GHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA------------------------------------ 215 (563)
Q Consensus 174 G~d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~------------------------------------ 215 (563)
|+|++++.+++++|++. ...+|++|++.|++.+|+...+...
T Consensus 424 G~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~ 503 (933)
T 2jgd_A 424 ADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDAT 503 (933)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999888742 2478999999999999875432100
Q ss_pred ---------------------------ccccCCCCC----CCCCCcc-------------CCC-----------------
Q 008493 216 ---------------------------DKYHGVAKF----DPATGKQ-------------FKS----------------- 234 (563)
Q Consensus 216 ---------------------------~~~h~~~~f----~~~~~~~-------------~~~----------------- 234 (563)
..||+..++ ++.|+.. .++
T Consensus 504 ~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~ 583 (933)
T 2jgd_A 504 EMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQA 583 (933)
T ss_dssp HHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHH
Confidence 112222221 1222211 000
Q ss_pred ---CcccccHHHHHHHHHHHHHhcCCCEEEEecCCCCC------------------cChHHHHHhC-CCCeeecccchHH
Q 008493 235 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG------------------TGLNLFLRRF-PTRCFDVGIAEQH 292 (563)
Q Consensus 235 ---~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s------------------~~~~~~~~~~-p~r~i~~gi~E~~ 292 (563)
..+.++|..+++.+|.+++++|++|+++++|++.+ +.+..|.++| |+|++|+||+|++
T Consensus 584 ~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~ 663 (933)
T 2jgd_A 584 MAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEA 663 (933)
T ss_dssp HHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHH
T ss_pred hhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHH
Confidence 01146789999999999999999999999999865 3467889999 9999999999999
Q ss_pred HHHHHHHHhhCCCe--eEEe-echhhHH---HHHHHHHHHh-c--cCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhh--
Q 008493 293 AVTFAAGLACEGLK--PFCA-IYSSFMQ---RAYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA-- 361 (563)
Q Consensus 293 ~~~~a~G~a~~G~~--~~~~-~~~~f~~---~a~dqi~~~a-~--~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~-- 361 (563)
++|+|+|+|+.|.+ |+++ .|++|++ +++||+++++ + .+++||+++.++ |+.| .|++||+..+..+++
T Consensus 664 ~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~ 741 (933)
T 2jgd_A 664 VLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLC 741 (933)
T ss_dssp HHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHh
Confidence 99999999999988 9887 5999996 9999998887 6 469999999988 4444 499999954445554
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHH-hcCCCCEEEEecCCCCCC-ccCCC---C-CCCCccccCceEEEeeCCcE--EEEE
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAA-AIDDRPSCFRYPRGNGIG-VELPP---G-NKGIPLEVGKGRILIEGERV--ALLG 433 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~-~~~~~P~~i~~~~~~~~~-~~~p~---~-~~~~~~~~~k~~~l~~g~dv--~iv~ 433 (563)
.+|||+|+.|+||.|++.+|+.++ +..++|++|+.+|..+.. ..++. . ...+..++|++.+++ |+|+ +|++
T Consensus 742 ~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~ 820 (933)
T 2jgd_A 742 AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMC 820 (933)
T ss_dssp CTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEE
T ss_pred CCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEE
Confidence 569999999999999999999985 434899999999875321 11110 0 023556778877666 8888 6777
Q ss_pred echhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCC---EEEEEeCCC-CCChHHHHHHHHHHcCCCCCC
Q 008493 434 YGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE---VLITVEEGS-IGGFGSHVVQFLAQDGLLDGT 509 (563)
Q Consensus 434 ~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~---~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~ 509 (563)
+|.+...+++|++.|+++ ++.||++++|+|||++.|.+++++++ .||++||+. .||+|+.|+..+.+.... .
T Consensus 821 ~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~ 896 (933)
T 2jgd_A 821 SGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--G 896 (933)
T ss_dssp CTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--T
T ss_pred chHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--C
Confidence 777777777777888655 89999999999999999999999887 899999976 799999999999886531 3
Q ss_pred CceEEeecCCcccCC-CCHHHHHHHcCCCHHHHHHHHH
Q 008493 510 VKWRPLVLPDRYIDH-GSPADQLAQAGLTPSHIAATVF 546 (563)
Q Consensus 510 ~~~~~~~~~~~~~~~-g~~~~ll~~~gl~~~~I~~~i~ 546 (563)
.++.++|.++.+.+. |... .+....+.|++++.
T Consensus 897 ~~v~~vg~~d~~~pa~g~~~----~h~~~~~~i~~~a~ 930 (933)
T 2jgd_A 897 ASLRYAGRPASASPAVGHMS----VHQKQQQDLVNDAL 930 (933)
T ss_dssp CEEEEEEECCCSSSSCSCHH----HHHHHHHHHHHHHH
T ss_pred CceEEEecCCcCCCCcCCHH----HHHHHHHHHHHHHh
Confidence 689999999999884 5432 23345677777665
No 18
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=3.2e-54 Score=441.84 Aligned_cols=304 Identities=21% Similarity=0.272 Sum_probs=271.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----ChHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe-ec
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 312 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~----~~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~~ 312 (563)
++|+++++++|.+++++|++++++++|++.+. .+.+|+++| |+||+|+||+|++|+++|+|+|++|+||+++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999997533 347899999 9999999999999999999999999999998 69
Q ss_pred hhhHHHHHHHHHHHhcc--------CCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHH
Q 008493 313 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 384 (563)
Q Consensus 313 ~~f~~~a~dqi~~~a~~--------~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a 384 (563)
++|++|++|||++++++ +++|++++.++ |..+.+|++|++ ++.++++++||++|++|+|++|++.++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999988887 89999999874 545667888888 666999999999999999999999999999
Q ss_pred HhcCCCCEEEEecCCCCCC--ccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccc
Q 008493 385 AAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 462 (563)
Q Consensus 385 ~~~~~~P~~i~~~~~~~~~--~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~ 462 (563)
++ .++|+++++++..... ..+|+ ..+.+++||++++++|+|++||++|++++.|++|++.|+++|++++||++++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 87 7899999988775322 22332 2456788999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHH
Q 008493 463 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHI 541 (563)
Q Consensus 463 l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I 541 (563)
++|||++.+.+++++++++|++|++. .|||+++|++.+.++++..+..++.++|.+|.|+++|+ +++++|+|+++|
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~I 314 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKDV 314 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHHH
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHHH
Confidence 99999999999999999999999986 79999999999988764334578899999999999886 899999999999
Q ss_pred HHHHHHHhc
Q 008493 542 AATVFNILG 550 (563)
Q Consensus 542 ~~~i~~~~~ 550 (563)
+++|+++++
T Consensus 315 ~~~i~~~l~ 323 (324)
T 1w85_B 315 IETAKKVMN 323 (324)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999999874
No 19
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=5.5e-54 Score=441.65 Aligned_cols=306 Identities=20% Similarity=0.269 Sum_probs=273.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCC--C-c-ChHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe-e
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGG--G-T-GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 311 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~--s-~-~~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~ 311 (563)
+++|+++++++|.+++++|++++++++|++. + + .+.+|+++| |+||+|+||+|++|+++|+|+|++|+||+++ +
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~ 93 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 93 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999999983 3 2 257899999 9999999999999999999999999999998 6
Q ss_pred chhhHHHHHHHHHHHhcc--------CCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHH
Q 008493 312 YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 383 (563)
Q Consensus 312 ~~~f~~~a~dqi~~~a~~--------~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~ 383 (563)
|++|++|++|||++++++ +++||++++++ |..|.+|+|||+..| ++++.+|||+|++|+|++|+++++++
T Consensus 94 f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 94 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999988883 99999999997 667889999987777 89999999999999999999999999
Q ss_pred HHhcCCCCEEEEecCCCCC-CccC----CCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEe
Q 008493 384 AAAIDDRPSCFRYPRGNGI-GVEL----PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 458 (563)
Q Consensus 384 a~~~~~~P~~i~~~~~~~~-~~~~----p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi 458 (563)
|++ .++|++||++|..+. ...+ ++ ..+.+++|+++++++|+|++||++|+++..|++|++.|+++|++++||
T Consensus 172 a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 172 AIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 987 589999999876311 1112 22 245678899999999999999999999999999999999999999999
Q ss_pred eccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHH-cCCCCCCCceEEeecCCcccCCCCHHHHHHHcCC
Q 008493 459 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQ-DGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 536 (563)
Q Consensus 459 ~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl 536 (563)
++++++|||++.+++++++++++|++|++. .|||+++|++.+.+ +++..++.++.++|++|.|+++|+ ++.+++++
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g~ 326 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSIP 326 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTSC
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhCc
Confidence 999999999999999998889999999997 79999999999998 765334578999999999999885 67889999
Q ss_pred CHHHHHHHHHHHhc
Q 008493 537 TPSHIAATVFNILG 550 (563)
Q Consensus 537 ~~~~I~~~i~~~~~ 550 (563)
|++.|+++|+++++
T Consensus 327 ~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 327 QVKDIIFAIKKTLN 340 (341)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999874
No 20
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=2.3e-54 Score=487.39 Aligned_cols=443 Identities=17% Similarity=0.123 Sum_probs=332.8
Q ss_pred CCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEccccc-ccchhHHHHHhhcccCCC---EEEEEeCCCCcc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVS 91 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~p---li~iv~nN~~~s 91 (563)
.|+||+++|.|+|+|+|.++.+ .+..+||++|||++ ++|.+||+||+|+.|++| +++||+||+ ++
T Consensus 244 ~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~-~g 322 (868)
T 2yic_A 244 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ-IG 322 (868)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECS-CB
T ss_pred CccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCC-cc
Confidence 5789999999999999998764 56789999999996 799999999999999988 999999998 66
Q ss_pred cCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeec
Q 008493 92 LPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP 171 (563)
Q Consensus 92 ~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 171 (563)
++|...+... .++...+++++||+++ .
T Consensus 323 ~st~~~~~~s----------------------------------------------------~~~~~~~a~a~G~p~~-~ 349 (868)
T 2yic_A 323 FTTAPTDSRS----------------------------------------------------SEYCTDVAKMIGAPIF-H 349 (868)
T ss_dssp TTBCHHHHCS----------------------------------------------------SSSTTGGGGGGTCCEE-E
T ss_pred cccCcccccc----------------------------------------------------ccCHHHHHHhCCCcEE-E
Confidence 6543211000 1223456899999988 6
Q ss_pred cCCCCHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc-------ccccCCC-C-------------CC---
Q 008493 172 VDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA-------DKYHGVA-K-------------FD--- 225 (563)
Q Consensus 172 ~dG~d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~-------~~~h~~~-~-------------f~--- 225 (563)
+||+|++++.+++++|.+. ..++|++|++.|++++|++..++.. ..|+... + ++
T Consensus 350 VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee 429 (868)
T 2yic_A 350 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKE 429 (868)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHH
Confidence 7999999999999888641 2478999999999999997644211 1222211 0 00
Q ss_pred -----------------------C-------------------CCCc-------------cCCCCc---ccc----cHHH
Q 008493 226 -----------------------P-------------------ATGK-------------QFKSSA---RTQ----SYTT 243 (563)
Q Consensus 226 -----------------------~-------------------~~~~-------------~~~~~~---~~~----~~~~ 243 (563)
+ .|+. ..++.. +.. .-+.
T Consensus 430 ~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~ 509 (868)
T 2yic_A 430 AEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRR 509 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHH
Confidence 0 0000 000000 000 0011
Q ss_pred ----------HHHH--HHHHHHhcCCCEEEEecCCCCCc------------------ChHHH------HH-hCCCCeeec
Q 008493 244 ----------YFAE--ALIAEAEVDKDVVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDV 286 (563)
Q Consensus 244 ----------a~~~--~l~~~~~~~~~v~~~~~D~~~s~------------------~~~~~------~~-~~p~r~i~~ 286 (563)
++.+ ++..+++++++|+++++|++.+| .+.+| .+ .+|+|++|+
T Consensus 510 ~m~~~~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds 589 (868)
T 2yic_A 510 EMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNS 589 (868)
T ss_dssp HHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEEC
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEEC
Confidence 2222 23355899999999999998752 24677 55 789999999
Q ss_pred ccchHHHHHHHHHHhhCC--CeeEEee-chhhHHHH---HHHHHHHhc---cCCCCeEEEEeCCCCCCCCCCCCCC--hh
Q 008493 287 GIAEQHAVTFAAGLACEG--LKPFCAI-YSSFMQRA---YDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCG--SF 355 (563)
Q Consensus 287 gi~E~~~~~~a~G~a~~G--~~~~~~~-~~~f~~~a---~dqi~~~a~---~~~~pv~~v~~~~G~~g~~G~tH~~--~~ 355 (563)
||||++++|+|+|+|+.| .+|+++. |++|++++ +||+++.+. +.++||+++.+++| .| +|++||+ .+
T Consensus 590 ~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E 667 (868)
T 2yic_A 590 ALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIE 667 (868)
T ss_dssp CSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHH
T ss_pred CccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHH
Confidence 999999999999999999 4666665 99999776 999987763 56999999999877 56 8999998 66
Q ss_pred hhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCCc-cCCCC----CCCCccccCceEE---EeeC
Q 008493 356 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGIGV-ELPPG----NKGIPLEVGKGRI---LIEG 426 (563)
Q Consensus 356 d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~-~~~P~~i~~~~~~~~~~-~~p~~----~~~~~~~~~k~~~---l~~g 426 (563)
++..++.+|||+|+.|+||.|++.+|+.++.. .++|++++++|..+... .++.. ...+..++|++.+ +++|
T Consensus 668 ~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g 747 (868)
T 2yic_A 668 RFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDR 747 (868)
T ss_dssp HHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCG
T ss_pred HHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccC
Confidence 66556999999999999999999999998774 35999999998753221 11110 0123336788776 7889
Q ss_pred CcE--EEEEechhHHHHHHHHHHHHhCC-CceEEeeccccccCcHHHHHHHhccCCE---EEEEeCCC-CCChHHHHHHH
Q 008493 427 ERV--ALLGYGTAVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQF 499 (563)
Q Consensus 427 ~dv--~iv~~G~~~~~~~~Aa~~L~~~G-i~v~vi~~~~l~Pf~~~~i~~~~~~~~~---vvvvE~~~-~gg~g~~v~~~ 499 (563)
+|+ +|||+|.+ ..++++++ +++| ++++|||+++|+|||+++|.++++++++ ||++||+. .||+|++|+..
T Consensus 748 ~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~ 824 (868)
T 2yic_A 748 NKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLT 824 (868)
T ss_dssp GGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHH
T ss_pred CceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHH
Confidence 999 99999998 67776665 5668 9999999999999999999999999876 77777765 89999999999
Q ss_pred HHHcCCCCCCCceEEeecCCcccCC-CCHH
Q 008493 500 LAQDGLLDGTVKWRPLVLPDRYIDH-GSPA 528 (563)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 528 (563)
+.+. +..++.++.++|.++.+.+. |...
T Consensus 825 l~e~-~~~l~~~v~~vg~~d~~~p~~g~~~ 853 (868)
T 2yic_A 825 LPEI-LPDHFTGLKRISRRAMSAPSSGSSK 853 (868)
T ss_dssp HHHH-CHHHHTTCEEEEECCCSSSSCSCHH
T ss_pred HHHH-hhhcCCCeEEeccCCcCCCCCCCHH
Confidence 9874 21113578999999999884 5543
No 21
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.1e-53 Score=438.04 Aligned_cols=304 Identities=23% Similarity=0.252 Sum_probs=270.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----ChHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe-e
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 311 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~----~~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~ 311 (563)
+++|+++++++|.+++++|++++++++|++.+. .+..|+++| |+||+|+||+|++|+++|+|+|++|+||+++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 468999999999999999999999999997533 347899999 9999999999999999999999999999998 6
Q ss_pred chhhHHHHHHHHHHHhcc--------CCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHH
Q 008493 312 YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 383 (563)
Q Consensus 312 ~~~f~~~a~dqi~~~a~~--------~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~ 383 (563)
|++|++|++|||++++++ +++|++++.++ |..+.+|++||+ +|.++++.+||++|++|+|++|++.++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999998886 89999999874 545667888888 67799999999999999999999999999
Q ss_pred HHhcCCCCEEEEecCCCCCC--ccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 384 AAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 384 a~~~~~~P~~i~~~~~~~~~--~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
|++ .++|+++++++..... ..+|+ ..+.+++||++++++|+|++||++|++++.|++|++.|+++|++++||+++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 997 7899999887764321 22332 235578899999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHH
Q 008493 462 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSH 540 (563)
Q Consensus 462 ~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~ 540 (563)
+++|||++.+++++++++++|++|++. .||||++|++.+.++++..++.++.++|.+|.|+++| +++++|+|+++
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~ 313 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTR 313 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHH
Confidence 999999999999999889999999986 7999999999998875433357889999999999887 88999999999
Q ss_pred HHHHHHHHhc
Q 008493 541 IAATVFNILG 550 (563)
Q Consensus 541 I~~~i~~~~~ 550 (563)
|+++++++++
T Consensus 314 I~~~i~~~l~ 323 (324)
T 1umd_B 314 ILNAAKRALD 323 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 22
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=4.2e-54 Score=443.39 Aligned_cols=318 Identities=17% Similarity=0.222 Sum_probs=271.2
Q ss_pred CCCCCCccCCCCcccccHHHHHHHHHHHHHhcCCCEEEEecCCCC-C-c-ChHHHHHhC-CCCeeecccchHHHHHHHHH
Q 008493 224 FDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGG-G-T-GLNLFLRRF-PTRCFDVGIAEQHAVTFAAG 299 (563)
Q Consensus 224 f~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~-s-~-~~~~~~~~~-p~r~i~~gi~E~~~~~~a~G 299 (563)
|++.++.+.....++.+|+++++++|.+++++|++++++++|++. + + .+..|+++| |+||+|+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 455555544333456789999999999999999999999999973 1 1 347899999 99999999999999999999
Q ss_pred HhhCCCeeEEe-echhhHHHHHHHHHHHhccCC--------C-CeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEE
Q 008493 300 LACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQK--------L-PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM 369 (563)
Q Consensus 300 ~a~~G~~~~~~-~~~~f~~~a~dqi~~~a~~~~--------~-pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~ 369 (563)
+|++|+||+++ +|++|++|++|||++++++++ + ||+++++++| +.+|+|||+.+|+++++.+||++|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 699999999999988888543 3 9999998876 3589999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCC--ccCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHHHH
Q 008493 370 APSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASAL 447 (563)
Q Consensus 370 ~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~--~~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa~~ 447 (563)
+|+|++|++.++++|++ .++|+++++++..... ..+|. ..+.+++|+++++++|+|++||++|++++.|++|++.
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999999987 4899999887543211 12332 2356788999999999999999999999999999999
Q ss_pred HHhC-CCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCC
Q 008493 448 LESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 525 (563)
Q Consensus 448 L~~~-Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 525 (563)
|+++ |++++||++++++|||++.+++++++++++|++|++. .||||++|++.+.++++..+..++.++|.+|.|++++
T Consensus 241 L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~ 320 (342)
T 2bfd_B 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI 320 (342)
T ss_dssp HHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST
T ss_pred HHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH
Confidence 9998 9999999999999999999999999889999999985 8999999999998875433356889999999888765
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 526 SPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 526 ~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+++++|+|++.|+++|+++++
T Consensus 321 ----l~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 321 ----FEPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp ----THHHHSCCHHHHHHHHHHHHT
T ss_pred ----HHHHHCcCHHHHHHHHHHHhc
Confidence 889999999999999999874
No 23
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2e-53 Score=490.84 Aligned_cols=443 Identities=17% Similarity=0.106 Sum_probs=333.3
Q ss_pred CCCCchhhHHHHHHHHhhhhcC----------CCCcEEEEEccccc-ccchhHHHHHhhcccCCC---EEEEEeCCCCcc
Q 008493 26 TGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVS 91 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~----------~~~~vv~~~GDG~~-~~G~~~Eal~~a~~~~~p---li~iv~nN~~~s 91 (563)
.|++|+++|.|+|+|+|.++.+ .+..+||++|||++ ++|.+|||||+|+.|++| +++||+||+ ++
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~-~g 567 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ-IG 567 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECS-CB
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCC-cc
Confidence 5889999999999999999865 56889999999996 899999999999999987 999999998 67
Q ss_pred cCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeec
Q 008493 92 LPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP 171 (563)
Q Consensus 92 ~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 171 (563)
++|...+... .++...+++++||+++ .
T Consensus 568 ist~~~~~~s----------------------------------------------------~~~~~~~a~a~G~p~~-~ 594 (1113)
T 2xt6_A 568 FTTAPTDSRS----------------------------------------------------SEYCTDVAKMIGAPIF-H 594 (1113)
T ss_dssp TTBCHHHHCS----------------------------------------------------SSSTTGGGGGGTCCEE-E
T ss_pred cccCcccccc----------------------------------------------------ccCHHHHHHhcCCcEE-E
Confidence 6543211000 0122345899999988 6
Q ss_pred cCCCCHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchhhhcc-------ccccCCC-C-------------CC---
Q 008493 172 VDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA-------DKYHGVA-K-------------FD--- 225 (563)
Q Consensus 172 ~dG~d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~~~~~-------~~~h~~~-~-------------f~--- 225 (563)
+||+|++++.+++++|.+. ..++|++|++.|++++|++..++.. ..|+... + ++
T Consensus 595 VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee 674 (1113)
T 2xt6_A 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKE 674 (1113)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHH
Confidence 7999999999999887641 2478999999999999997644211 0111110 0 00
Q ss_pred -----------------------C-------------------CCCc-------------cCCCCc---ccc----cHHH
Q 008493 226 -----------------------P-------------------ATGK-------------QFKSSA---RTQ----SYTT 243 (563)
Q Consensus 226 -----------------------~-------------------~~~~-------------~~~~~~---~~~----~~~~ 243 (563)
+ .|+. .+++.. +.. .-+.
T Consensus 675 ~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~ 754 (1113)
T 2xt6_A 675 AEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRR 754 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHH
Confidence 0 0000 000000 000 0010
Q ss_pred ------HHHH------HHHHHHhcCCCEEEEecCCCCCc------------------ChHHH------HH-hCCCCeeec
Q 008493 244 ------YFAE------ALIAEAEVDKDVVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDV 286 (563)
Q Consensus 244 ------a~~~------~l~~~~~~~~~v~~~~~D~~~s~------------------~~~~~------~~-~~p~r~i~~ 286 (563)
++.. ++..+++++++|+++++|++.++ .+.+| .+ .+|+|++|+
T Consensus 755 ~m~~~~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds 834 (1113)
T 2xt6_A 755 EMAYEGRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNS 834 (1113)
T ss_dssp HHHHHCCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEEC
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEEC
Confidence 1122 33445999999999999998754 35778 55 679999999
Q ss_pred ccchHHHHHHHHHHhhCC--CeeEEee-chhhHHHH---HHHHHHHh---ccCCCCeEEEEeCCCCCCCCCCCCCCh--h
Q 008493 287 GIAEQHAVTFAAGLACEG--LKPFCAI-YSSFMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCGS--F 355 (563)
Q Consensus 287 gi~E~~~~~~a~G~a~~G--~~~~~~~-~~~f~~~a---~dqi~~~a---~~~~~pv~~v~~~~G~~g~~G~tH~~~--~ 355 (563)
||||++++|+|+|+|+.| .+|+++. |++|++++ +||+++++ .+.++||+++.+++| .| +|++||+. +
T Consensus 835 ~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E 912 (1113)
T 2xt6_A 835 ALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIE 912 (1113)
T ss_dssp CSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHH
Confidence 999999999999999999 5667775 99999776 99998876 356999999999877 56 89999995 4
Q ss_pred hhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCCc-cCCCC----CCCCccccCceEE---EeeC
Q 008493 356 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGIGV-ELPPG----NKGIPLEVGKGRI---LIEG 426 (563)
Q Consensus 356 d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~-~~~P~~i~~~~~~~~~~-~~p~~----~~~~~~~~~k~~~---l~~g 426 (563)
++..++.+|||+|+.|+||.|++.+|+.++.. .++|++++++|..+... .++.. ...+..++|++.+ +++|
T Consensus 913 ~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g 992 (1113)
T 2xt6_A 913 RFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDR 992 (1113)
T ss_dssp HHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCS
T ss_pred HHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCc
Confidence 44444999999999999999999999998775 35999999998753221 11110 0123336888876 7889
Q ss_pred CcE--EEEEechhHHHHHHHHHHHHhCC-CceEEeeccccccCcHHHHHHHhccCCE---EEEEeCCC-CCChHHHHHHH
Q 008493 427 ERV--ALLGYGTAVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQF 499 (563)
Q Consensus 427 ~dv--~iv~~G~~~~~~~~Aa~~L~~~G-i~v~vi~~~~l~Pf~~~~i~~~~~~~~~---vvvvE~~~-~gg~g~~v~~~ 499 (563)
+|+ +|||+|.+ +.+++|++ +++| ++++|||+++|+|||+++|.++++++++ ||++||+. .||+|++|+..
T Consensus 993 ~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~ 1069 (1113)
T 2xt6_A 993 NKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLT 1069 (1113)
T ss_dssp TTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHH
T ss_pred cccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHH
Confidence 999 99999998 77777766 5668 9999999999999999999999999877 78887765 89999999999
Q ss_pred HHHcCCCCCCCceEEeecCCcccCC-CCHH
Q 008493 500 LAQDGLLDGTVKWRPLVLPDRYIDH-GSPA 528 (563)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 528 (563)
+.+. +..++.++.++|.++.+.+. |...
T Consensus 1070 l~e~-~~~l~~~~~~vg~~d~~~p~~g~~~ 1098 (1113)
T 2xt6_A 1070 LPEI-LPDHFTGLKRISRRAMSAPSSGSSK 1098 (1113)
T ss_dssp HHHH-SHHHHTTCEEEEECCCSSSSCSCHH
T ss_pred HHHH-hhhcCCCeEEEccCCcCCCCCCCHH
Confidence 9873 21113578999999999884 5543
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=7.7e-52 Score=426.91 Aligned_cols=301 Identities=22% Similarity=0.264 Sum_probs=265.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCc----ChHHHHHhC-CCCeeecccchHHHHHHHHHHhhCCCeeEEe-e
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 311 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~----~~~~~~~~~-p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~-~ 311 (563)
+++|+++++++|.+++++|++++++++|++.+. .+..|+++| |+||+|+||+|++|+++|+|+|++|+||+++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 458999999999999999999999999997533 357899999 9999999999999999999999999999997 6
Q ss_pred chhhHHHHHHHHHHHhccC--------CCCeEEEEeCCCCCCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHH
Q 008493 312 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 383 (563)
Q Consensus 312 ~~~f~~~a~dqi~~~a~~~--------~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~ 383 (563)
|++|+++++|||+++++++ ++||+++.+++| +.+|++||+.+|+++++.+|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999999999998888854 499999998877 578999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEec----CCCCC---Cc-----------cCCCCCCCCccccCceEEEeeCCcEEEEEechhHHHHHHHH
Q 008493 384 AAAIDDRPSCFRYP----RGNGI---GV-----------ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAS 445 (563)
Q Consensus 384 a~~~~~~P~~i~~~----~~~~~---~~-----------~~p~~~~~~~~~~~k~~~l~~g~dv~iv~~G~~~~~~~~Aa 445 (563)
|++ .++|++|+++ |.... .. .+|+ ..+.+++||++++++|+|++|||+|++++.|++|+
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 998 4899999776 33211 00 1222 23457789999999999999999999999999999
Q ss_pred HHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCC
Q 008493 446 ALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDH 524 (563)
Q Consensus 446 ~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 524 (563)
+. +|++++||++++++|||++.+.+++++++++|++|++. .|||+++|++.+.++++..+..++.++|.+|.|.++
T Consensus 239 ~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~ 315 (338)
T 1qs0_B 239 EE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPH 315 (338)
T ss_dssp HH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCS
T ss_pred HH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcH
Confidence 87 59999999999999999999999999999999999987 799999999999887653345789999999998776
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 525 GSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 525 g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+ +++++++++++|+++|+++++
T Consensus 316 ~----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 316 A----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp T----THHHHSCCHHHHHHHHHHSSC
T ss_pred H----HHHHHCCCHHHHHHHHHHHhc
Confidence 5 889999999999999998763
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.92 E-value=5.7e-26 Score=237.97 Aligned_cols=284 Identities=15% Similarity=0.125 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh-HHHHH---hCCCCeeecccchHHHHHHHHHHhhCCCeeEEeechh
Q 008493 239 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-NLFLR---RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS 314 (563)
Q Consensus 239 ~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~-~~~~~---~~p~r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~ 314 (563)
++=.+|+..++.. ...+++..-+-.. ++.+ ..|.+ ++..+++.+. +|++++++|.|+|++|.||++++.++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~ 97 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGP 97 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCch
Confidence 3456666665444 3555555433322 3333 44444 4567888887 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCCeEEEEeCCCCC--CCCC-CCCCChhhhhhhhcCC--CcEEEecCCHHHHHHHHHHHHh---
Q 008493 315 FMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADG-PTHCGSFDVTFMACLP--NMVVMAPSDEAELFHMVATAAA--- 386 (563)
Q Consensus 315 f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~--g~~G-~tH~~~~d~~~~~~~p--~~~v~~P~~~~e~~~~l~~a~~--- 386 (563)
++.+++|+|. .++..++|++++...++.. |... ..|++..+. .+.++| ++.++.|++++|+++++..|++
T Consensus 98 G~~~~~d~l~-~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~ 175 (395)
T 1yd7_A 98 GFSLMQENIG-YAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSE 175 (395)
T ss_dssp HHHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9988999995 5678899999987654422 2122 223344443 445555 8999999999999999999985
Q ss_pred cCCCCEEEEecCCC---CCCccCCCC-----------------CCCCcc--cc--------Cc-----------------
Q 008493 387 IDDRPSCFRYPRGN---GIGVELPPG-----------------NKGIPL--EV--------GK----------------- 419 (563)
Q Consensus 387 ~~~~P~~i~~~~~~---~~~~~~p~~-----------------~~~~~~--~~--------~k----------------- 419 (563)
+.+.||+++++... ...+++|+. +..+.. +. +.
T Consensus 176 ~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~ 255 (395)
T 1yd7_A 176 KYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRP 255 (395)
T ss_dssp HHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------------------------------------------
T ss_pred HHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCc
Confidence 45699999886421 000001100 000111 00 00
Q ss_pred -----------------------------eEEEeeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHH
Q 008493 420 -----------------------------GRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 470 (563)
Q Consensus 420 -----------------------------~~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~ 470 (563)
.++.++|+|++||++|+++..+++|++.|+++|++++||+++++||||.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~ 335 (395)
T 1yd7_A 256 RTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFEL 335 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHH
Confidence 012235789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 008493 471 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 549 (563)
Q Consensus 471 i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~ 549 (563)
|.++++++++|+|+|++. ||++++|++.+... .++..++..+ | .-+++++|++++++++
T Consensus 336 i~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 336 IERIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 999999999999999997 99999999887642 1222333211 1 1268899999888754
No 26
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.84 E-value=1.2e-20 Score=197.02 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCC
Q 008493 10 LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ 89 (563)
Q Consensus 10 ~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~ 89 (563)
+++|+...+ .+...++|+||+++|.|+|+|+|.++.+++++|||++|||++++|.+||+|++|+.|++|+++||+||+
T Consensus 146 ~~~H~~~~~-~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~- 223 (400)
T 2bfd_A 146 MPVHYGCKE-RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG- 223 (400)
T ss_dssp CSSCCCBTT-TTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECS-
T ss_pred CCcCCcccc-cCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCc-
Confidence 455543221 224456799999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEe
Q 008493 90 VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYI 169 (563)
Q Consensus 90 ~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 169 (563)
+++.|...... -.+++..++++|||+++
T Consensus 224 ~~i~~~~~~~~----------------------------------------------------~~~d~~~~a~a~G~~~~ 251 (400)
T 2bfd_A 224 YAISTPTSEQY----------------------------------------------------RGDGIAARGPGYGIMSI 251 (400)
T ss_dssp EETTEEGGGTC----------------------------------------------------SSSTTGGGTGGGTCEEE
T ss_pred eeeeecccccC----------------------------------------------------CCCCHHHHHHHcCCcEE
Confidence 66654321100 01344566999999988
Q ss_pred eccCCCCHHHHHHHHHHHhcc--CCCCcEEEEEEecccCCcchh
Q 008493 170 GPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 170 ~~~dG~d~~~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~~~ 211 (563)
.+||+|++++.+++++|.+. ..++|++|+++|++-.|++..
T Consensus 252 -~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~ 294 (400)
T 2bfd_A 252 -RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTS 294 (400)
T ss_dssp -EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-
T ss_pred -EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCC
Confidence 78999999999999877641 147899999999887777653
No 27
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.84 E-value=3.9e-19 Score=208.26 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=181.9
Q ss_pred CeeecccchHHHHHHHHHHhhCCCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMA 361 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~ 361 (563)
+++....+|.++++++.|+|++|.|++++|.++.+..+.|.+. .+++.++|++++...++..+..-.++.+..|. +..
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~a 132 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAA 132 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTT
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHH
Confidence 6899999999999999999999999999999999988899984 55667999888886544222111334444443 335
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCCC----CCccCCCC--------------------CCCCc
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGNG----IGVELPPG--------------------NKGIP 414 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~~----~~~~~p~~--------------------~~~~~ 414 (563)
..+++.|++|++++|+++++..|++ +.+.|++++.+...+ .++++|+. ++...
T Consensus 133 r~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~p 212 (1231)
T 2c42_A 133 RQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHP 212 (1231)
T ss_dssp TTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTSC
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCCc
Confidence 5699999999999999999999865 468899998876321 12222210 00000
Q ss_pred cccC--------------------------------------c----e-EEEeeCCcEEEEEechhHHHHHHHHHHHHhC
Q 008493 415 LEVG--------------------------------------K----G-RILIEGERVALLGYGTAVQSCLAASALLESN 451 (563)
Q Consensus 415 ~~~~--------------------------------------k----~-~~l~~g~dv~iv~~G~~~~~~~~Aa~~L~~~ 451 (563)
.+.| + . +.-.+++|++||+||++.+.+++|++.|+++
T Consensus 213 ~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~ 292 (1231)
T 2c42_A 213 HVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLAAK 292 (1231)
T ss_dssp CEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHHTT
T ss_pred eecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 1111 1 1 2234678999999999999999999999999
Q ss_pred CCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCC-----hHHHHHHHHHHcCCCCCCCceEEeecCCcccCCC
Q 008493 452 GLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGG-----FGSHVVQFLAQDGLLDGTVKWRPLVLPDRYIDHG 525 (563)
Q Consensus 452 Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg-----~g~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 525 (563)
|++|+||++++++|||.+.|.+++ ++.++|+|+|++...| +..+|...+.... ...++...+ +++..|
T Consensus 293 G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~gl~g 366 (1231)
T 2c42_A 293 GEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYGLGS 366 (1231)
T ss_dssp TCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECCGGG
T ss_pred CCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EECCCC
Confidence 999999999999999999999998 6779999999985322 4556666554421 011222222 222111
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhcc
Q 008493 526 SPADQLAQAGLTPSHIAATVFNILGQ 551 (563)
Q Consensus 526 ~~~~ll~~~gl~~~~I~~~i~~~~~~ 551 (563)
..++++.|.+.+.++...
T Consensus 367 --------~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 367 --------KEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp --------CCCCHHHHHHHHHHHHTT
T ss_pred --------CCCCHHHHHHHHHHhhcC
Confidence 127899999999887654
No 28
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.84 E-value=7.5e-21 Score=197.21 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCC
Q 008493 10 LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ 89 (563)
Q Consensus 10 ~~g~~~~~~~~~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~ 89 (563)
+++|+... ..+....+|++|+++|.|+|+|+|.++.+++++|||++|||++++|.++|||++|+.|++|+++||+||+
T Consensus 128 ~~~h~~~~-~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~- 205 (367)
T 1umd_A 128 MPEHPGSK-ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF- 205 (367)
T ss_dssp CSSCCCBT-TTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-
T ss_pred CCCCCccc-ccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-
Confidence 55666322 1233457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEe
Q 008493 90 VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYI 169 (563)
Q Consensus 90 ~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 169 (563)
+++.|.... ..-.+++..++++|||+++
T Consensus 206 ~gi~~~~~~----------------------------------------------------~~~~~d~~~~a~a~G~~~~ 233 (367)
T 1umd_A 206 YAISVDYRH----------------------------------------------------QTHSPTIADKAHAFGIPGY 233 (367)
T ss_dssp EETTEEHHH----------------------------------------------------HCSSSCSGGGGGGTTSCEE
T ss_pred eeeccChhh----------------------------------------------------ccCCCCHHHHHHHcCCcEE
Confidence 666332100 0002355677999999988
Q ss_pred eccCCCCHHHHHHHHHHHhc--cCCCCcEEEEEEecccCCcchhh
Q 008493 170 GPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 170 ~~~dG~d~~~l~~a~~~a~~--~~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
.+||+|..++.+++++|.+ ...++|++|+++|.+++|++.++
T Consensus 234 -~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 234 -LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp -EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred -EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 6799999999888776654 13578999999999999998753
No 29
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.83 E-value=1.5e-20 Score=194.35 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=115.3
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
+...+.|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+|++|+.|++|+++||+||+ +++.|.....
T Consensus 136 ~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~~~- 213 (368)
T 1w85_A 136 NVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTPVEKQ- 213 (368)
T ss_dssp CBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEGGGT-
T ss_pred ccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceeccccc-
Confidence 44456799999999999999999999999999999999999999999999999999999999999998 6664422110
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
.-.+++..+++++||+++ .+||+|++++
T Consensus 214 ---------------------------------------------------~~~~d~~~~a~a~G~~~~-~VdG~D~~av 241 (368)
T 1w85_A 214 ---------------------------------------------------TVAKTLAQKAVAAGIPGI-QVDGMDPLAV 241 (368)
T ss_dssp ---------------------------------------------------CSCSCSGGGGGGTTCCEE-EEETTCHHHH
T ss_pred ---------------------------------------------------cCCCCHHHHHHHCCCCEE-EEcCCCHHHH
Confidence 001345677999999988 6799999999
Q ss_pred HHHHHHHhcc--CCCCcEEEEEEecccCCcc-hh
Q 008493 181 VAILEEVKNT--KTTGPVLIHVVTEKGRGYP-YA 211 (563)
Q Consensus 181 ~~a~~~a~~~--~~~~P~~I~v~t~~g~g~~-~~ 211 (563)
.+++++|.+. +.++|++|++.|++..|+. .+
T Consensus 242 ~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~ 275 (368)
T 1w85_A 242 YAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275 (368)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCC
Confidence 9999988751 2578999999999999987 54
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.82 E-value=3.2e-20 Score=193.79 Aligned_cols=135 Identities=22% Similarity=0.225 Sum_probs=112.6
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+|++|+.|++|++|||+||+ +++.|......
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~-~gi~~~~~~~~---- 253 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ-WAISTFQAIAG---- 253 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECS-EETTEEGGGGT----
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCC-cceeecccccc----
Confidence 4699999999999999999999999999999999999999999999999999999999999998 66644221000
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
. -.+++..++++|||+++ .+||+|++++.+++
T Consensus 254 ~-----------------------------------------------~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~ 285 (407)
T 1qs0_A 254 G-----------------------------------------------ESTTFAGRGVGCGIASL-RVDGNDFVAVYAAS 285 (407)
T ss_dssp T-----------------------------------------------TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHH
T ss_pred C-----------------------------------------------CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHH
Confidence 0 01234556999999988 67999999999999
Q ss_pred HHHhcc--CCCCcEEEEEEecccCCcchhh
Q 008493 185 EEVKNT--KTTGPVLIHVVTEKGRGYPYAE 212 (563)
Q Consensus 185 ~~a~~~--~~~~P~~I~v~t~~g~g~~~~~ 212 (563)
++|.+. ..++|++|++.|++++|++.++
T Consensus 286 ~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 286 RWAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp HHHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 887642 2578999999999999998765
No 31
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.80 E-value=2e-19 Score=185.28 Aligned_cols=131 Identities=23% Similarity=0.302 Sum_probs=107.1
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+|+|.++.++++.|||++|||++++|.+||+||+|+.|++|++|||+||+ +++.|...
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~-~g~~t~~~------- 209 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTSVE------- 209 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEHH-------
T ss_pred CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCC-cccCCCcc-------
Confidence 3499999999999999999999999999999999999999999999999999999999999998 56533210
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+. ...+++.. +++|++++ .+||+|++++.+++
T Consensus 210 --------~~-------------------------------------~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~ 241 (365)
T 2ozl_A 210 --------RA-------------------------------------AASTDYYK--RGDFIPGL-RVDGMDILCVREAT 241 (365)
T ss_dssp --------HH-------------------------------------CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHH
T ss_pred --------cc-------------------------------------cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHH
Confidence 00 00112222 57899887 57999999999999
Q ss_pred HHHhcc--CCCCcEEEEEEecccCCcchh
Q 008493 185 EEVKNT--KTTGPVLIHVVTEKGRGYPYA 211 (563)
Q Consensus 185 ~~a~~~--~~~~P~~I~v~t~~g~g~~~~ 211 (563)
++|.+. ..++|++|++.|++..|++.+
T Consensus 242 ~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 242 RFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp HHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred HHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 887641 367899999999999998754
No 32
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.62 E-value=1.4e-15 Score=131.34 Aligned_cols=107 Identities=13% Similarity=0.247 Sum_probs=88.5
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHc
Q 008493 424 IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQD 503 (563)
Q Consensus 424 ~~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~ 503 (563)
.+|+|++||+||++++.+++|++.|+++|++++++++++++|||.+.+.++++++++|+|+|++.+||++++|...+...
T Consensus 11 ~~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~~ 90 (118)
T 3ju3_A 11 EKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGID 90 (118)
T ss_dssp CSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCCC
T ss_pred CCCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999988899999988755210
Q ss_pred CCCCCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Q 008493 504 GLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 550 (563)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~ 550 (563)
+ ...+..++.. -+++++|.++++++++
T Consensus 91 -------~------~~~i~~~~G~-------~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 91 -------I------KNKILKYNGR-------HMTEDEILKSAKEILN 117 (118)
T ss_dssp -------C------CCCCCCBTTB-------CCCHHHHHHHHHHHHH
T ss_pred -------c------eeEEeeeCCe-------eCCHHHHHHHHHHHhh
Confidence 0 0111111111 2899999999999874
No 33
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.50 E-value=1.5e-14 Score=160.18 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=97.8
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+++|.+ +++|||++|||+++++ +++|++|+++++|+++||.||+.+.+
T Consensus 418 ~~g~~G~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~------------ 479 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF------------ 479 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH------------
T ss_pred ccccccchhHHHhhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH------------
Confidence 56999999999999999975 8899999999999864 68899999999999999999974332
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+ +..+.....+.+ .+ .++-.+++..++++||++++++ ++.+++.+++
T Consensus 480 --~-~~~~~~~~~~~~-------------~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 526 (603)
T 4feg_A 480 --I-KDEQEDTNQNDF-------------IG--------------VEFNDIDFSKIADGVHMQAFRV---NKIEQLPDVF 526 (603)
T ss_dssp --H-HHHHHHHCSSCC-------------CS--------------SBCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHH
T ss_pred --H-HHHHHHhcCCCc-------------cc--------------CcCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 1 000000000000 00 0111234556699999999866 6788999999
Q ss_pred HHHh--ccCCCCcEEEEEEecccCCcch
Q 008493 185 EEVK--NTKTTGPVLIHVVTEKGRGYPY 210 (563)
Q Consensus 185 ~~a~--~~~~~~P~~I~v~t~~g~g~~~ 210 (563)
++++ + .++|++||+.|.+++.++.
T Consensus 527 ~~a~~~~--~~gP~lIev~~~~~~~~~~ 552 (603)
T 4feg_A 527 EQAKAIA--QHEPVLIDAVITGDRPLPA 552 (603)
T ss_dssp HHHHHHT--TTSCEEEEEECCCCCCCCT
T ss_pred HHHHHhc--CCCcEEEEEEeCCCCCCCc
Confidence 9998 6 6899999999987766554
No 34
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.48 E-value=3.8e-14 Score=156.53 Aligned_cols=140 Identities=17% Similarity=0.221 Sum_probs=98.5
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
-+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++
T Consensus 423 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~----------- 485 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIM--NVQELATIRVENLPVKVLLLNNQHLGM----------- 485 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHH--TTTHHHHHHHTTCCEEEEEEECSBCHH-----------
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCcEEEEEECCcchH-----------
Confidence 345999999999999999975 789999999999995 467999999999999999888875433
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
. +.+++......+. ....+.+. ......+++..++++||+++..+ ++.++|.++
T Consensus 486 ---~-~~~~~~~~~~~~~---------~~~~~~p~----------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 539 (590)
T 1ybh_A 486 ---V-MQWEDRFYKANRA---------HTFLGDPA----------QEDEIFPNMLLFAAACGIPAARV---TKKADLREA 539 (590)
T ss_dssp ---H-HHHHHHHSTTCCC---------SCBCSCGG----------GTTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHH
T ss_pred ---H-HHHHHHhcCCccc---------cccccccc----------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHH
Confidence 1 1111110000000 00000000 00000135566799999998866 789999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCCc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
++++.+ .++|++||+.|.++...
T Consensus 540 l~~a~~--~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 540 IQTMLD--TPGPYLLDVICPHQEHV 562 (590)
T ss_dssp HHHHHH--SSSCEEEEEECCTTCCC
T ss_pred HHHHHh--CCCCEEEEEEecCCccc
Confidence 999987 58899999999988754
No 35
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.47 E-value=3.9e-14 Score=158.18 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=99.0
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
.-+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+.+
T Consensus 509 sg~~G~mG~~lpaAiGaalA~p----~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~---------- 572 (677)
T 1t9b_A 509 SGGLGTMGYGLPAAIGAQVAKP----ESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGM---------- 572 (677)
T ss_dssp CCSSCCTTCHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHH----------
T ss_pred CCCcchhhchHHHHHHHHHhCC----CCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchh----------
Confidence 3346999999999999999964 899999999999995 567899999999999888888874332
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
+ +.++.......| .. .+.-.+++..++++||++++++ ++.++|.+
T Consensus 573 ----~-~~~~~~~~~~~~-------------~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 617 (677)
T 1t9b_A 573 ----V-TQWQSLFYEHRY-------------SH--------------THQLNPDFIKLAEAMGLKGLRV---KKQEELDA 617 (677)
T ss_dssp ----H-HHHHHHHSTTCC-------------CS--------------CCCCCCCHHHHHHHTTCEEEEE---CSHHHHHH
T ss_pred ----h-hhhhhhhcCCCc-------------cc--------------CcCCCCCHHHHHHHcCCeEEEE---CCHHHHHH
Confidence 1 111110000000 00 0111245667799999999876 78999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccCCc
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
+++++.+ .++|++|++.|.++...
T Consensus 618 al~~a~~--~~gp~lIev~~~~~~~~ 641 (677)
T 1t9b_A 618 KLKEFVS--TKGPVLLEVEVDKKVPV 641 (677)
T ss_dssp HHHHHHH--CSSCEEEEEEBCSSCCC
T ss_pred HHHHHHH--CCCcEEEEEEecCCccc
Confidence 9999987 68899999999988754
No 36
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.46 E-value=6.1e-14 Score=154.78 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=97.3
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|.|+|+|+|.+ +++|||++|||+++++ +++|++|+++++|+++||.||+.+.+....+...
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---- 480 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---- 480 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS----
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh----
Confidence 57999999999999999975 7899999999999954 6899999999999999998887555533222110
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
+|. ..+ .++-.+++..++++||+++.++ ++.++|.+++
T Consensus 481 --------------~~~-----------~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 518 (590)
T 1v5e_A 481 --------------NKN-----------LFG--------------VDFTDVDYAKIAEAQGAKGFTV---SRIEDMDRVM 518 (590)
T ss_dssp --------------CCS-----------CCC--------------CCCCCCCHHHHHHHTTSEEEEE---CBHHHHHHHH
T ss_pred --------------cCC-----------Ccc--------------ccCCCCCHHHHHHHcCCEEEEE---CCHHHHHHHH
Confidence 000 000 0001134456699999998866 6899999999
Q ss_pred HHHhcc-CCCCcEEEEEEecccC
Q 008493 185 EEVKNT-KTTGPVLIHVVTEKGR 206 (563)
Q Consensus 185 ~~a~~~-~~~~P~~I~v~t~~g~ 206 (563)
+++.+. +.++|++|+++|.++.
T Consensus 519 ~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 519 AEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHhcCCCCCEEEEEEecccc
Confidence 988761 1178999999999876
No 37
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.46 E-value=3.7e-14 Score=155.84 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=98.8
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCC
Q 008493 23 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 102 (563)
Q Consensus 23 ~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~ 102 (563)
..+.|+||+++|.|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++
T Consensus 416 ~~g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~---------- 479 (566)
T 1ozh_A 416 SNGQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNM---------- 479 (566)
T ss_dssp CCTTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHH----------
T ss_pred CCCcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhH----------
Confidence 4467999999999999999975 799999999999995 467899999999999999999975432
Q ss_pred CchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 103 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
. +.+++......| ..++-.+++..++++||++++++ ++.+++.+
T Consensus 480 ----~-~~~~~~~~~~~~----------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 523 (566)
T 1ozh_A 480 ----V-AIQEEKKYQRLS----------------------------GVEFGPMDFKAYAESFGAKGFAV---ESAEALEP 523 (566)
T ss_dssp ----H-HHHHHHHHSSCC----------------------------SCBCCCCCHHHHHHTTTSEEEEC---CSGGGHHH
T ss_pred ----H-HHHHHHhcCCCc----------------------------cCcCCCCCHHHHHHHcCCeEEEe---CCHHHHHH
Confidence 1 111111000000 01112245667799999998866 67899999
Q ss_pred HHHHHhccCCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++++.+ .++|++|++.|.+...
T Consensus 524 al~~a~~--~~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 524 TLRAAMD--VDGPAVVAIPVDYRDN 546 (566)
T ss_dssp HHHHHHH--SSSCEEEEEEBCCTTH
T ss_pred HHHHHHh--CCCCEEEEEEeCCCcC
Confidence 9999986 6899999999998764
No 38
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.46 E-value=4.8e-14 Score=154.42 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=98.0
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+.+.+..+..
T Consensus 403 ~~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~---- 472 (549)
T 3eya_A 403 FNHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSM--LMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKA---- 472 (549)
T ss_dssp TTTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCCCC----------
T ss_pred CCCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHh----
Confidence 467999999999999999975 789999999999984 5688999999999998888888754431111100
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
.++ .....++-.+++..++++||+++.++ ++.++|.++
T Consensus 473 --------------~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~a 510 (549)
T 3eya_A 473 --------------GGY-------------------------LTDGTELHDTNFARIAEACGITGIRV---EKASEVDEA 510 (549)
T ss_dssp ---------------------------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHH
T ss_pred --------------cCC-------------------------CCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHH
Confidence 000 00111222346677799999998866 788999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCCc
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
++++.+ .++|++||++|.+....
T Consensus 511 l~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 511 LQRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp HHHHHH--SSSCEEEEEEBCCCCSC
T ss_pred HHHHHh--CCCCEEEEEEecccccc
Confidence 999987 68999999999876543
No 39
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.45 E-value=9e-14 Score=153.00 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=96.5
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++
T Consensus 433 ~g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~--~~~~L~~a~~~~l~~~ivv~NN~~~~~----------- 495 (573)
T 2iht_A 433 AGCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHS--NSSDLETIARLNLPIVTVVVNNDTNGL----------- 495 (573)
T ss_dssp SSSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHH--TGGGHHHHHHHTCCCEEEEEECSBCHH-----------
T ss_pred CCCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHh--HHHHHHHHHHhCCCeEEEEEECCcchh-----------
Confidence 356999999999999999975 789999999999995 468999999999999888888875432
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHH--hccccCCCcchhhhcCceEeeccCCCCHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA--RGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 181 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~ 181 (563)
. +.+++...... .. .++-.+++..++++||+++.++ ++.+++.
T Consensus 496 ---~-~~~~~~~~~~~----------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~ 540 (573)
T 2iht_A 496 ---I-ELYQNIGHHRS----------------------------HDPAVKFGGVDFVALAEANGVDATRA---TNREELL 540 (573)
T ss_dssp ---H-HHHHHHHHSSC----------------------------CGGGTBCCCCCHHHHHHHTTCEEEEC---CSHHHHH
T ss_pred ---h-HHHHHHhcCCC----------------------------cCccccCCCCCHHHHHHHcCCeEEEe---CCHHHHH
Confidence 1 11111000000 00 1111245667799999998866 7899999
Q ss_pred HHHHHHhccCCCCcEEEEEEecc
Q 008493 182 AILEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 182 ~a~~~a~~~~~~~P~~I~v~t~~ 204 (563)
++++++.+ .++|++||++|.+
T Consensus 541 ~al~~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 541 AALRKGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHT--SSSCEEEEEEBCC
T ss_pred HHHHHHHh--CCCCEEEEEECCC
Confidence 99999987 6899999999998
No 40
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.45 E-value=6.8e-14 Score=152.51 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=94.0
Q ss_pred CCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchh
Q 008493 27 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 106 (563)
Q Consensus 27 g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~ 106 (563)
|+||+++|.|+|+|+|.+ +++|||++|||+++++ +++|++|+++++|+++||.||+.+++
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~-------------- 460 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA-------------- 460 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH--------------
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchH--------------
Confidence 999999999999999975 7899999999999955 79999999999999999988874332
Q ss_pred hHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHH
Q 008493 107 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 186 (563)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~ 186 (563)
. +.+++......+ .+ .++-.+++..++++||++++.+ ++.+++.+++++
T Consensus 461 ~-~~~~~~~~~~~~-------------~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~ 509 (528)
T 1q6z_A 461 L-RWFAGVLEAENV-------------PG--------------LDVPGIDFRALAKGYGVQALKA---DNLEQLKGSLQE 509 (528)
T ss_dssp H-HHHHHHHTCCSC-------------CS--------------CBCCCCCHHHHHHHHTCEEEEE---SSHHHHHHHHHH
T ss_pred h-HHHHHHhcCCCc-------------cc--------------CCCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHH
Confidence 1 111111000000 00 0111235566799999998865 678999999999
Q ss_pred HhccCCCCcEEEEEEeccc
Q 008493 187 VKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 187 a~~~~~~~P~~I~v~t~~g 205 (563)
+.+ .++|++||++|.+.
T Consensus 510 a~~--~~gp~liev~~~~~ 526 (528)
T 1q6z_A 510 ALS--AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHT--CSSCEEEEEEBCC-
T ss_pred HHH--CCCcEEEEEEecCC
Confidence 987 68999999999764
No 41
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.44 E-value=6e-14 Score=154.14 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=99.1
Q ss_pred CcccCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCC
Q 008493 21 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 100 (563)
Q Consensus 21 ~~~~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~ 100 (563)
+...+.|+||+++|.|+|+|+|.+ +++++|||++|||+++++ +++|++|+++++|+++||.||+.+++
T Consensus 413 ~~~~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~-------- 480 (563)
T 2uz1_A 413 LCHGYLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGA-------- 480 (563)
T ss_dssp ECCCTTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHH--------
T ss_pred ECCCCCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchH--------
Confidence 344567999999999999999984 448999999999999964 57999999999999988888874432
Q ss_pred CCCchhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHH
Q 008493 101 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 180 (563)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l 180 (563)
. +..+....+.. +..+ .++-.+++..++++||++++++ ++.++|
T Consensus 481 ------~-~~~~~~~~~~~------------~~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l 524 (563)
T 2uz1_A 481 ------T-LHFQQLAVGPN------------RVTG--------------TRLENGSYHGVAAAFGADGYHV---DSVESF 524 (563)
T ss_dssp ------H-HHHHHHHTCTT------------CCCS--------------CBCCCCCHHHHHHHTTCEEEEE---CSHHHH
T ss_pred ------H-HHHHHHhcCCC------------cccC--------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHH
Confidence 1 11110000000 0000 0111235566799999998866 789999
Q ss_pred HHHHHHHhccCCCCcEEEEEEecccC
Q 008493 181 VAILEEVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 181 ~~a~~~a~~~~~~~P~~I~v~t~~g~ 206 (563)
.++++++.+ .++|++||+.|.+..
T Consensus 525 ~~al~~a~~--~~gp~liev~~~~~~ 548 (563)
T 2uz1_A 525 SAALAQALA--HNRPACINVAVALDP 548 (563)
T ss_dssp HHHHHHHHH--SSSCEEEEEECCSCC
T ss_pred HHHHHHHHH--CCCCEEEEEEecccc
Confidence 999999987 689999999998544
No 42
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.44 E-value=8.3e-14 Score=153.11 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=97.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++....++
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~------ 474 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIHD------ 474 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC------
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeecc------
Confidence 56999999999999999975 789999999999995 567899999999998888888865443221110
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCc-----eEeeccCCCCHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNVDD 179 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-----~~~~~~dG~d~~~ 179 (563)
..| .++-.+++..++++||+ ++.++ ++.++
T Consensus 475 -------------~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~e 509 (566)
T 2vbi_A 475 -------------GPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKE 509 (566)
T ss_dssp -------------CGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHH
T ss_pred -------------CCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHH
Confidence 000 01112467788999999 88866 68999
Q ss_pred HHHHHHHHhccCC-CCcEEEEEEecccCC
Q 008493 180 LVAILEEVKNTKT-TGPVLIHVVTEKGRG 207 (563)
Q Consensus 180 l~~a~~~a~~~~~-~~P~~I~v~t~~g~g 207 (563)
|.++++++.+ . ++|++|+++|.+...
T Consensus 510 l~~al~~a~~--~~~gp~liev~~~~~~~ 536 (566)
T 2vbi_A 510 LTEAIARAKA--NTRGPTLIECQIDRTDC 536 (566)
T ss_dssp HHHHHHHHHH--CCSSCEEEEEECCTTCC
T ss_pred HHHHHHHHHh--cCCCcEEEEEEeCcccC
Confidence 9999999986 4 789999999998764
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.43 E-value=9.7e-14 Score=152.15 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=97.2
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|+|+|+|+|.+ +++|||++|||+++ +.+++|.+|+++++|+++||.||+.+++....+ +.
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~-~~--- 474 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH-GA--- 474 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHS-CT---
T ss_pred hhhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEeec-cC---
Confidence 357999999999999999975 78999999999998 557889999999999888888887444311000 00
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCc----eEeeccCCCCHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL----YYIGPVDGHNVDD 179 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~----~~~~~~dG~d~~~ 179 (563)
...| .++-.+++..++++||+ ++..+ ++.++
T Consensus 475 -------------~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~v---~~~~~ 509 (552)
T 1ovm_A 475 -------------EQRY-----------------------------NDIALWNWTHIPQALSLDPQSECWRV---SEAEQ 509 (552)
T ss_dssp -------------TCGG-----------------------------GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHH
T ss_pred -------------CCCc-----------------------------ccCCCCCHHHHHHHhCCCcCCCEEEe---CCHHH
Confidence 0000 01113467788999999 77755 68999
Q ss_pred HHHHHHHHhccCCCCcEEEEEEecccCC
Q 008493 180 LVAILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 180 l~~a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
|.++++++.+ .++|++|+++|.+...
T Consensus 510 l~~al~~a~~--~~gp~liev~~~~~~~ 535 (552)
T 1ovm_A 510 LADVLEKVAH--HERLSLIEVMLPKADI 535 (552)
T ss_dssp HHHHHHHHTT--CSSEEEEEEECCTTCC
T ss_pred HHHHHHHHHh--CCCCEEEEEEcCcccC
Confidence 9999999886 6889999999987543
No 44
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.42 E-value=7.4e-14 Score=153.42 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=99.1
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+|+|.+..+.+++|||++|||++++ .+++|++|+++++|+++||.||+.+.+....+ +..
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~-~~~-- 484 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLIH-GPK-- 484 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHS-CTT--
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhhh-CCC--
Confidence 4579999999999999999987777799999999999985 57889999999999999998887443311000 000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCce---EeeccCCCCHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY---YIGPVDGHNVDDL 180 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~dG~d~~~l 180 (563)
..| .++-.+++..++++||++ +.++ ++.++|
T Consensus 485 --------------~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~v---~~~~el 518 (563)
T 2vk8_A 485 --------------AQY-----------------------------NEIQGWDHLSLLPTFGAKDYETHRV---ATTGEW 518 (563)
T ss_dssp --------------CGG-----------------------------GCCCCCCGGGHHHHTTCSSEEEEEE---CBHHHH
T ss_pred --------------CCc-----------------------------ccCCCCCHHHHHHHhCCCCCcEEEe---cCHHHH
Confidence 000 011124677889999998 7755 679999
Q ss_pred HHHHH-HHhccCCCCcEEEEEEecccCC
Q 008493 181 VAILE-EVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 181 ~~a~~-~a~~~~~~~P~~I~v~t~~g~g 207 (563)
.++++ ++.+. .++|++|+++|.+...
T Consensus 519 ~~al~~~a~~~-~~~p~liev~~~~~~~ 545 (563)
T 2vk8_A 519 DKLTQDKSFND-NSKIRMIEVMLPVFDA 545 (563)
T ss_dssp HHHHTCTTTTS-CSSEEEEEEECCTTCC
T ss_pred HHHHHHHHHhC-CCCcEEEEEEeCcccc
Confidence 99999 77651 3479999999986543
No 45
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.42 E-value=9.7e-14 Score=153.21 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=99.1
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+.+
T Consensus 421 ~g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~----------- 483 (589)
T 2pgn_A 421 MAEGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYY--HFNEFRVAVEHKLPVITMVFTNESYGA----------- 483 (589)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHH-----------
T ss_pred CCcchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHh--hHHHHHHHHHhCCCeEEEEEECCCccc-----------
Confidence 356999999999999999975 789999999999995 469999999999999999988875332
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
. +.++.......| ..++-.+|+..++++||++++.+ ++.++|.++
T Consensus 484 ---~-~~~~~~~~~~~~----------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 528 (589)
T 2pgn_A 484 ---N-WTLMNHQFGQNN----------------------------WTEFMNPDWVGIAKAFGAYGESV---RETGDIAGA 528 (589)
T ss_dssp ---H-HHHHHHHHSSCC----------------------------SCBCCCCCHHHHHHHHTCEEEEC---TTTCCHHHH
T ss_pred ---c-hHHHHhhcCCCc----------------------------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 1 111110000000 01111246667799999998865 567888999
Q ss_pred HHHHhccCCCCcEEEEEEecccCCcch
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRGYPY 210 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g~~~ 210 (563)
++++.+ .++|++|++.|.++....+
T Consensus 529 l~~a~~--~~gp~liev~~~~~~~~~~ 553 (589)
T 2pgn_A 529 LQRAID--SGKPALIEIPVSKTQGLAS 553 (589)
T ss_dssp HHHHHH--HCSCEEEEEECCSSSSTTT
T ss_pred HHHHHh--CCCCEEEEEEecCCCCcCc
Confidence 998886 5789999999998876644
No 46
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.42 E-value=1e-13 Score=153.82 Aligned_cols=138 Identities=21% Similarity=0.222 Sum_probs=96.1
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
-+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++.
T Consensus 439 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~NN~~~~~~---------- 502 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQF--LIEELAVGAQFNIPYIHVLVNNAYLGLI---------- 502 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCHHH----------
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhC--CHHHHHHHHHhCCCeEEEEEECCcchHH----------
Confidence 346999999999999999975 789999999999995 4689999999999999888888754431
Q ss_pred chhhHHHHhhhhcCh-----hhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHH
Q 008493 104 VGALSSALSRLQSNR-----PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 178 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~ 178 (563)
+.+++..... .|... ... .. ....+++..++++||++++++ ++.+
T Consensus 503 -----~~~~~~~~~~~~~~~~~~~~----------~~~-~~-----------~~~~~d~~~~a~a~G~~~~~v---~~~~ 552 (616)
T 2pan_A 503 -----RQSQRAFDMDYCVQLAFENI----------NSS-EV-----------NGYGVDHVKVAEGLGCKAIRV---FKPE 552 (616)
T ss_dssp -----HHHGGGGTCCCSCBCCCCCT----------TCG-GG-----------TTCCCCHHHHHHHTTCEEEEE---CSGG
T ss_pred -----HHHHHHhcCCcccccccccc----------ccc-cC-----------CCCCCCHHHHHHHcCCeEEEE---CCHH
Confidence 1111111000 00000 000 00 000134556799999998866 6788
Q ss_pred HHHHHHHHHhcc--CCCCcEEEEEEecccCC
Q 008493 179 DLVAILEEVKNT--KTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 179 ~l~~a~~~a~~~--~~~~P~~I~v~t~~g~g 207 (563)
+|.++++++.+. +.++|++|+++|.++..
T Consensus 553 el~~al~~a~~~~~~~~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 553 DIAPAFEQAKALMAQYRVPVVVEVILERVTN 583 (616)
T ss_dssp GHHHHHHHHHHHHHHHCSCEEEEEEBCSCCC
T ss_pred HHHHHHHHHHhhcccCCCcEEEEEEeccccc
Confidence 999999887640 13789999999998874
No 47
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.42 E-value=2.4e-13 Score=149.07 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCch
Q 008493 26 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 105 (563)
Q Consensus 26 ~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~ 105 (563)
.|++|+ +|+|+|+|+| + +++|||++|||+|+ +..++|++|+++++|+++||.||+++.+...
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~---------- 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSL---------- 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccC----------
Confidence 477777 9999999998 3 78999999999998 5567899999999999999999985443110
Q ss_pred hhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHH
Q 008493 106 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 185 (563)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~ 185 (563)
+ ... ....+.+....-.+|+..++++||+++.++ ++.+++.++++
T Consensus 478 -~----~~~---------------------------~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 522 (556)
T 3hww_A 478 -L----PTP---------------------------QSERERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFA 522 (556)
T ss_dssp -------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHH
T ss_pred -C----CCc---------------------------chhHHHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHH
Confidence 0 000 000000011122467788899999998866 78999999999
Q ss_pred HHhccCCCCcEEEEEEecccC
Q 008493 186 EVKNTKTTGPVLIHVVTEKGR 206 (563)
Q Consensus 186 ~a~~~~~~~P~~I~v~t~~g~ 206 (563)
++.+ .++|++||+.|.+..
T Consensus 523 ~a~~--~~gp~liev~~~~~~ 541 (556)
T 3hww_A 523 DAWR--TPTTTVIEMVVNDTD 541 (556)
T ss_dssp HHTT--SSSEEEEEEECCSSH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 9987 689999999998654
No 48
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.40 E-value=1.7e-13 Score=150.77 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=95.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
-+.|+||+++|+|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+.+....+ +.
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~-~~--- 491 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREIH-GP--- 491 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHS-CT---
T ss_pred ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHHh-cc---
Confidence 367999999999999999975 799999999999995 56789999999999988888887443311000 00
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCce-----EeeccCCCCHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-----YIGPVDGHNVD 178 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-----~~~~~dG~d~~ 178 (563)
...| .++-.+++..++++||++ +.++ ++.+
T Consensus 492 -------------~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~ 526 (570)
T 2vbf_A 492 -------------TQSY-----------------------------NDIPMWNYSKLPETFGATEDRVVSKIV---RTEN 526 (570)
T ss_dssp -------------TCGG-----------------------------GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHH
T ss_pred -------------CCCc-----------------------------cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHH
Confidence 0000 111235677889999997 6655 7899
Q ss_pred HHHHHHHHH-hccCCCCcEEEEEEecccCC
Q 008493 179 DLVAILEEV-KNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 179 ~l~~a~~~a-~~~~~~~P~~I~v~t~~g~g 207 (563)
++.++++++ .+ .++|++|++.|.+..-
T Consensus 527 el~~al~~a~~~--~~~p~liev~~~~~~~ 554 (570)
T 2vbf_A 527 EFVSVMKEAQAD--VNRMYWIELVLEKEDA 554 (570)
T ss_dssp HHHHHHHHHHHC--TTSEEEEEEECCTTCC
T ss_pred HHHHHHHHHHhc--CCCcEEEEEEcCcccc
Confidence 999999984 54 6789999999987653
No 49
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.40 E-value=1.5e-13 Score=151.02 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=95.8
Q ss_pred cCCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCC
Q 008493 24 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 103 (563)
Q Consensus 24 ~~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~ 103 (563)
.+.|+||+++|.|+|+|+|.+ +++|||++|||++++ .+++|++|+++++|+++||.||+.+++....++
T Consensus 410 ~~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~----- 478 (568)
T 2wvg_A 410 MQWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHD----- 478 (568)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC-----
T ss_pred CCcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeecc-----
Confidence 356999999999999999975 899999999999995 568899999999999888888865443221110
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCc---------eEeeccCC
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL---------YYIGPVDG 174 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---------~~~~~~dG 174 (563)
..|. ++-.+++..++++||+ ++..+
T Consensus 479 --------------~~~~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v--- 512 (568)
T 2wvg_A 479 --------------GPYN-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKA--- 512 (568)
T ss_dssp --------------CGGG-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---
T ss_pred --------------CCCc-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceEEe---
Confidence 0000 0111244556899999 77755
Q ss_pred CCHHHHHHHHHHHhccCCCCcEEEEEEecccCCc
Q 008493 175 HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 175 ~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g~g~ 208 (563)
++.+++.++++++.+. .++|++||++|.+....
T Consensus 513 ~~~~el~~al~~a~~~-~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 513 KTGGELAEAIKVALAN-TDGPTLIECFIGREDCT 545 (568)
T ss_dssp SBHHHHHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred CCHHHHHHHHHHHHhc-CCCcEEEEEEcCccccC
Confidence 7899999999999862 27899999999987643
No 50
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.40 E-value=1.7e-13 Score=150.44 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=95.8
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
+.|+||+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|+++++|+++||.||+.+++....+
T Consensus 420 ~~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~------- 486 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQ------- 486 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHC-------
T ss_pred ccccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeec-------
Confidence 46999999999999999975 78999999999999 778999999999999888888887443211000
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
....| .++-.+++..++++||+++.++ ++.++|.+++
T Consensus 487 -----------~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 523 (565)
T 2nxw_A 487 -----------PESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAAL 523 (565)
T ss_dssp -----------TTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHH
T ss_pred -----------ccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHH
Confidence 00001 0111235566799999998866 6899999999
Q ss_pred HHHhccCCCCcE-EEEEEecccCC
Q 008493 185 EEVKNTKTTGPV-LIHVVTEKGRG 207 (563)
Q Consensus 185 ~~a~~~~~~~P~-~I~v~t~~g~g 207 (563)
+++.+ .++|+ +|+++|.+..-
T Consensus 524 ~~a~~--~~gp~~liev~~~~~~~ 545 (565)
T 2nxw_A 524 DKAFA--TRGRFQLIEAMIPRGVL 545 (565)
T ss_dssp HHHHH--CCSSCEEEEEECCTTCC
T ss_pred HHHHh--cCCCeEEEEEEcccccC
Confidence 99987 56887 99999986543
No 51
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.38 E-value=2e-13 Score=151.12 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCc
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 104 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~ 104 (563)
|.|.||+++|.|+|+|+| . +++|||++|||+++++ +++|++|+++++|+++||.||+.+.+....+
T Consensus 453 G~~~ig~~l~~AiGaala-~----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~------- 518 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEG-T----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLP------- 518 (604)
T ss_dssp TTCCSSSHHHHHHHHHHH-H----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSG-------
T ss_pred CcCCcCcHHHHHHHHHhc-C----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCC-------
Confidence 457899999999999999 3 7899999999999964 5779999999999999998887554311100
Q ss_pred hhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHH
Q 008493 105 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 184 (563)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~ 184 (563)
..+....| ......+..+|+..++++||+++.++ ++.++|.+++
T Consensus 519 --------~~q~~~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 562 (604)
T 2x7j_A 519 --------QASEKTHF-------------------------EDLFGTPTGLDFKHAAALYGGTYSCP---ASWDEFKTAY 562 (604)
T ss_dssp --------GGSCHHHH-------------------------HHHTTCCCCCCTHHHHHHTTCEEECC---SSHHHHHHHC
T ss_pred --------CCccchhh-------------------------HhhccCCCCCCHHHHHHHcCCeEEec---CCHHHHHHHH
Confidence 00000000 01111122357788899999998866 6899999999
Q ss_pred HHHhccCCCCcEEEEEEecccCC
Q 008493 185 EEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 185 ~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++.+ .++|++|+++|.+...
T Consensus 563 ~~a~~--~~gp~liev~~~~~~~ 583 (604)
T 2x7j_A 563 APQAD--KPGLHLIEIKTDRQSR 583 (604)
T ss_dssp CCCCS--SCCEEEEEEECCHHHH
T ss_pred HHHHh--CCCCEEEEEECCcccc
Confidence 98876 6899999999986543
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.38 E-value=1e-12 Score=144.37 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=96.2
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCc-ccCcccCCCCCCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 103 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~-s~~t~~~~~~~~~ 103 (563)
+.|+||+++|+|+|+|+| + +++|||++|||+++ +.+++|.+|+++++|+++||.||+.+ ++..........
T Consensus 419 ~~g~~G~~l~~AiGaa~a-~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~- 490 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-S----GSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA- 490 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-H----CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC-
T ss_pred CCCcccchHHHHHHHhhc-C----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC-
Confidence 569999999999999998 3 88999999999998 45688999999999999999999742 331100000000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccc-cCCCcchhhhcCceEeeccCCCCHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 182 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~dG~d~~~l~~ 182 (563)
... .+.. .+++..++++||+++.++ ++.++|.+
T Consensus 491 ~~~-------------------------------------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 524 (564)
T 2q28_A 491 PSP-------------------------------------------TDLLHHARYDKLMDAFRGVGYNV---TTTDELRH 524 (564)
T ss_dssp CCT-------------------------------------------TBCCTTCCGGGGGGGGTCEEEEE---CSHHHHHH
T ss_pred ccc-------------------------------------------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHH
Confidence 000 0000 246778899999998876 78999999
Q ss_pred HHHHHhccCCCCcEEEEEEecccCC
Q 008493 183 ILEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 183 a~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
+++++.+ .++|++|++.|.+...
T Consensus 525 al~~a~~--~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 525 ALTTGIQ--SRKPTIINVVIDPAAG 547 (564)
T ss_dssp HHHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHHh--CCCCEEEEEEeccccC
Confidence 9999986 5789999999987654
No 53
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.37 E-value=1.1e-12 Score=144.26 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=95.5
Q ss_pred CCCCCchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCc-ccCcccCCCCCCC
Q 008493 25 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 103 (563)
Q Consensus 25 ~~g~~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~-s~~t~~~~~~~~~ 103 (563)
+.|+||+++|+|+|+|+| + +++|||++|||+++ +.+++|++++++++|+++||.||+.+ ++.. .+.....
T Consensus 424 ~~g~~G~~l~~AiGaala-~----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~-~~~~~~~- 494 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-T----GKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNE-ADPQPGV- 494 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-H----CSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCC-CCSBTTB-
T ss_pred CCccccccHHHHHHHHhC-C----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHH-HHhhcCC-
Confidence 569999999999999998 3 88999999999998 56788999999999999999999742 3211 1100000
Q ss_pred chhhHHHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHH
Q 008493 104 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 183 (563)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a 183 (563)
... .+.-.+++..++++||+++.++ ++.++|.++
T Consensus 495 ~~~-------------------------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 528 (568)
T 2c31_A 495 ISC-------------------------------------------TRLTRGRYDMMMEAFGGKGYVA---NTPAELKAA 528 (568)
T ss_dssp CCT-------------------------------------------TBCCCCCHHHHHHTTTCEEEEE---SSHHHHHHH
T ss_pred ccc-------------------------------------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHH
Confidence 000 0000134556799999998876 789999999
Q ss_pred HHHHhccCCCCcEEEEEEecccCC
Q 008493 184 LEEVKNTKTTGPVLIHVVTEKGRG 207 (563)
Q Consensus 184 ~~~a~~~~~~~P~~I~v~t~~g~g 207 (563)
++++.+ .++|++|+++|.+...
T Consensus 529 l~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 529 LEEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHh--CCCCEEEEEEeccccC
Confidence 999986 5789999999997654
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.31 E-value=1.7e-12 Score=142.83 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=83.7
Q ss_pred CchhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhhH
Q 008493 29 SSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALS 108 (563)
Q Consensus 29 ~G~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~ 108 (563)
+|+++|+|+|+|++ +++|||++|||+|+ +..++|++|+++++|+++||.||+.+.+...
T Consensus 438 ~~g~l~~AiGaa~~------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~------------- 496 (578)
T 3lq1_A 438 IDGVVSSALGASVV------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFSF------------- 496 (578)
T ss_dssp SSSHHHHHHHHTTT------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhcC------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccccc-------------
Confidence 34479999999743 78999999999998 5568899999999999999999975433110
Q ss_pred HHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCCCCHHHHHHHHHHHh
Q 008493 109 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 188 (563)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG~d~~~l~~a~~~a~ 188 (563)
+...+....|. ........+|+..++++||+++.++ ++.++|.++++++.
T Consensus 497 --~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~ 546 (578)
T 3lq1_A 497 --LPQANEPKYFE-------------------------SLFGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKAS 546 (578)
T ss_dssp ---------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHT
T ss_pred --cccccccchhh-------------------------hhccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHH
Confidence 00000000000 0000112357788899999998867 78999999999998
Q ss_pred ccCCCCcEEEEEEecccCCc
Q 008493 189 NTKTTGPVLIHVVTEKGRGY 208 (563)
Q Consensus 189 ~~~~~~P~~I~v~t~~g~g~ 208 (563)
+ .++|++||+.|.+....
T Consensus 547 ~--~~gp~liev~~~~~~~~ 564 (578)
T 3lq1_A 547 Y--HKGLDIIEVKTNRHENK 564 (578)
T ss_dssp T--SSSEEEEEEC-------
T ss_pred h--CCCCEEEEEECCccccH
Confidence 7 68999999999876543
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.69 E-value=2.6e-08 Score=117.12 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=81.8
Q ss_pred CCcEEEEEccc-ccccchhHHHHHhhcccCCCEEEEEeCCCCcccCcccCCCCCCCchhhHHHHhhhhcChhhHHHHHHH
Q 008493 49 KNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 127 (563)
Q Consensus 49 ~~~vv~~~GDG-~~~~G~~~Eal~~a~~~~~pli~iv~nN~~~s~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 127 (563)
+++|||+.||| +++.| .++|.+|..+++|+++||.||+.++. |..|.+.....+.-.+
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~-tg~Q~s~~t~~~~~t~------------------ 1011 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSN-TGGQSSKATPTGAVAK------------------ 1011 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTT-TTCBCCTTSCTTCCBB------------------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHh-HHhhhccCCCCCceee------------------
Confidence 48899999999 88854 57899999999999999999985443 3334433221111000
Q ss_pred hhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhcCceEeeccCC-CCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 128 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~dG-~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
+ . ...++.-.+|+..++++||+.++..+.- .+++++.+++++|.+ .++|++|++.+..-
T Consensus 1012 --~-~--------------~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1012 --F-A--------------AAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYATCI 1071 (1231)
T ss_dssp --T-B--------------TTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECCCG
T ss_pred --e-c--------------ccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeecCc
Confidence 0 0 0000111246667799999998865544 599999999999997 68999999998754
No 56
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.90 E-value=0.18 Score=54.66 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCC
Q 008493 273 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT 350 (563)
Q Consensus 273 ~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~t 350 (563)
+.+.+. +-|++.+ ..|++++.+|.|+|.. |...++. |+++....++--+ ..+...+.|++++..........-..
T Consensus 35 ~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~ 111 (563)
T 2uz1_A 35 QACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDETNT 111 (563)
T ss_dssp HHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTSCC
T ss_pred HHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCchh
Confidence 344433 4566664 8999999999999987 6544444 5788776666555 45667899999987544431111123
Q ss_pred CCC-hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 351 HCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 351 H~~-~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
||. ..+..+++.+..+ .+...+++++...+.+|+. ..++||+|.++..
T Consensus 112 ~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 112 LQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp TTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 666 6666788877655 5666778888888887765 2458999988765
No 57
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.78 E-value=0.12 Score=56.50 Aligned_cols=113 Identities=10% Similarity=-0.091 Sum_probs=78.7
Q ss_pred ecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhhhhc
Q 008493 285 DVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC 362 (563)
Q Consensus 285 ~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~~~~ 362 (563)
-....|++++.+|.|+|.. |...+|. |+++.+..++--+ ..+...+.|++++.......-..-..+|......+++.
T Consensus 47 i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~ 125 (590)
T 1v5e_A 47 LQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDH 125 (590)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHT
T ss_pred EeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHh
Confidence 3469999999999999998 5443433 4777776566555 45667799999987544421111123555555578888
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 363 LPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 363 ~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
+..+ .+.+.+++++...+++|+. ..++||+| ++...
T Consensus 126 ~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 126 IAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp TCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred hccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 7766 6788889888888888876 23489999 98764
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=94.75 E-value=0.21 Score=54.20 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=76.0
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEE-eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~-~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++.+ ..|++++.+|.|+|.. |...+| .|+++....++.-+ ..+.+.+.|++++..........-..||......+
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~ 127 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC------CCCHHHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCCCcccccCHHHH
Confidence 45544 8999999999999986 654444 45788776555555 45667799999887544321111134666666678
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
++.+..+ .+...+++++...+++|+. ..++||+|.++..
T Consensus 128 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 128 FSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 8877665 4566777778777777765 2358999988765
No 59
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.73 E-value=0.23 Score=54.19 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=79.6
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
|++. ...|++++.+|.|+|.. |...++. |+++....++--+ ..|...+.|++++...... .+. ..+|.....
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPIV 127 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC--CcccccCHH
Confidence 4444 48999999999999986 6554444 4788775555555 4567789999998754432 222 235555556
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEEEEecCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 399 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~i~~~~~ 399 (563)
.+++.+-.+ .+...+++++..++++|+.. .++||+|-++..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 788877766 56677888999999988862 358999988654
No 60
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=94.67 E-value=0.33 Score=52.37 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=76.7
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEE-eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~-~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
|++. ...|+++..+|.|+|.. |...++ .|+++....++--+ ..+...+.|++++...... .+. ..+|...+.
T Consensus 43 ~~i~-~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMS-TRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (549)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHH
Confidence 4554 48999999999999986 654444 45888776665555 5677889999998744332 222 235555555
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
.+++.+-.+ .+...+++++...+++|+. ..++|++|.++..
T Consensus 119 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred HHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 677776654 4556677777777777664 3578999988654
No 61
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=94.54 E-value=0.39 Score=52.05 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=76.0
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCC-----C
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC-----G 353 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~-----~ 353 (563)
|++.+ ..|++++.+|.|+|.. |.-+++.|+++....++.-+ ..+...+.|++++...... .+.+...|| +
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred eEecc-CcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence 55554 9999999999999975 82233345888776666666 4577889999998754443 232222333 2
Q ss_pred -hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 354 -SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 354 -~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
..+..+++.+-.+ .+.+.+++++...+++|+. ..++||+|.++...
T Consensus 121 ~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 121 YHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred hHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 1345677777666 4555666666666666654 23599999987764
No 62
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=94.31 E-value=0.42 Score=52.17 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=74.0
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEE-eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~-~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
|++- ...|+++..+|.|+|.. |...+| .|+++....++--+ ..|...+.||+++...... .+. ..+|...+.
T Consensus 52 ~~i~-~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~ 127 (603)
T 4feg_A 52 HYIQ-VRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNM--DTFQEMNEN 127 (603)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCG
T ss_pred eEEE-ecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCC--CccccccHH
Confidence 5554 48999999999999976 754444 45888876665555 5677889999988744332 222 234444445
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
.+++.+-.+. +...+++++...+.+|+. ..++|++|.++...
T Consensus 128 ~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 172 (603)
T 4feg_A 128 PIYADVADYN-VTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL 172 (603)
T ss_dssp GGGTTTCSEE-EECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred HHhhhhceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 6777766553 344455555555555543 24799999987753
No 63
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=94.15 E-value=0.31 Score=54.00 Aligned_cols=114 Identities=13% Similarity=0.004 Sum_probs=78.2
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEE-eechhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChhhhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTF 359 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~-~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~d~~~ 359 (563)
|++- ...|++++.+|.|+|.. |...+| .|+++....++--+ ..|...+.|++++..........-..+|......+
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i 199 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGI 199 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHH
Confidence 4444 58999999999999986 754444 45888776555555 45667799999987543321111123565555677
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecC
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPR 398 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~ 398 (563)
++.+-.+. +...++.++...+.+|+. ..++||+|-++.
T Consensus 200 ~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 200 SRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp TGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 78776664 455678888888888876 246899998874
No 64
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=94.12 E-value=0.33 Score=52.90 Aligned_cols=113 Identities=8% Similarity=-0.044 Sum_probs=77.5
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCee-EEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~-~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
|++.+ ..|++++.+|.|+|.. |... ++.|+++....++--+ ..+...+.|++++...... .+. +..||...+.
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 55554 8999999999999986 6433 4445777765555555 5667889999998754432 222 2157776666
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
. ++.+..+ .+...+++++...+.+|+. ..++||+|.++..
T Consensus 122 ~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 6 7766655 4566777778777777765 2348999988765
No 65
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=94.10 E-value=0.36 Score=52.23 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=73.9
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCC-----
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC----- 352 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~----- 352 (563)
|++. ...|++++.+|.|+|.. | .+++. |+++....++.-+ ..+...+.|++++...... .+.....||
T Consensus 43 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 4554 58999999999999976 8 54444 4788776666666 4567889999998754443 222222333
Q ss_pred C-hhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCCC
Q 008493 353 G-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 400 (563)
Q Consensus 353 ~-~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~~ 400 (563)
+ ..+..+++.+-.+ .+.+.+++++...+++|+. ..++|++|.++...
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCA-AESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 2 1335677777654 3444555555555555544 23599999998764
No 66
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=94.01 E-value=0.18 Score=54.70 Aligned_cols=115 Identities=18% Similarity=0.060 Sum_probs=80.1
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeE-EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 356 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~-~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d 356 (563)
=|++. ...|+++..+|.|+|.. |.-.+ +.|+++....++.-+ ..+.+.+.|++++...... .+. +..||...+
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFP-NDTHQCLDS 125 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCT-TTSTTCCCH
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCC-cCccccCCH
Confidence 34444 48999999999999987 64433 345888876666666 4667789999998754432 222 135777766
Q ss_pred hhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 357 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 357 ~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
..+++.+..+ .+...+++++...+++|+. ..++||+|.++..
T Consensus 126 ~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 126 VAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7788877765 4566677778888887765 2358999988654
No 67
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=93.61 E-value=0.42 Score=51.25 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=76.6
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhh
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 357 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~ 357 (563)
|++ ....|++++.+|.|+|.. |...+|. |.++.+..++.-+ ..+...+.|++++...... .+.+..+|. ....
T Consensus 40 ~~i-~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYI-LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEE-ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEE-EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 444 458999999999999987 7665554 4677776666666 4577889999998754332 233323331 2344
Q ss_pred hhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCCC
Q 008493 358 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 400 (563)
Q Consensus 358 ~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~~ 400 (563)
.+++.+..+ .+.+.+++++...+.+|+. ..++|++|.++...
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 677776665 4556666667666666654 34579999887764
No 68
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=93.55 E-value=1.2 Score=47.91 Aligned_cols=147 Identities=11% Similarity=0.057 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCCCCcCh---HHHHHhCCC-CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHH
Q 008493 245 FAEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 317 (563)
Q Consensus 245 ~~~~l~~~~~~~-~~v~~~~~D~~~s~~~---~~~~~~~p~-r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~ 317 (563)
..+.|.+.+++. -+.++. +.|+..+ +.+.+ .++ |++- ...|+++.-+|.|+|.. |...+|. |+++...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 445666666553 444443 2344433 33433 343 4554 57899999999999976 7554444 5888876
Q ss_pred HHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhhhhhhcCCCcEEE--ecCC---HHHHHHHHHHHHhc-CC
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSD---EAELFHMVATAAAI-DD 389 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~~~~~~~p~~~v~--~P~~---~~e~~~~l~~a~~~-~~ 389 (563)
.++--+ ..|...+.|++++...... .+. ..||...+..+++.+-.+... .|.+ +.++..++++|+.. .+
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDC--GANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSS--SCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhcc--CCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 655555 4667789999998744332 232 246666666777777666543 3432 45688899999863 35
Q ss_pred CCEEEEecCC
Q 008493 390 RPSCFRYPRG 399 (563)
Q Consensus 390 ~P~~i~~~~~ 399 (563)
+||+|-++..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 8999998864
No 69
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=93.44 E-value=0.53 Score=51.51 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=90.8
Q ss_pred HHHHHHHh-cCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeE-E-eechhhHHHH
Q 008493 247 EALIAEAE-VDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPF-C-AIYSSFMQRA 319 (563)
Q Consensus 247 ~~l~~~~~-~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~-~-~~~~~f~~~a 319 (563)
++|.+.++ ..-+.++.. .|+..+ +.+.+ .++--+-....|++++.+|.|+|.. |.+|- + .|+++....+
T Consensus 31 ~~l~~~L~~~GV~~vfg~---PG~~~~~l~~al~~-~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~ 106 (616)
T 2pan_A 31 DAAMYVLEKEGITTAFGV---PGAAINPFYSAMRK-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDM 106 (616)
T ss_dssp HHHHHHHHHTTCCEEEEC---CCGGGHHHHHHHHH-HCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTS
T ss_pred HHHHHHHHHCCCCEEEEC---CCCccHHHHHHHHh-cCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHH
Confidence 34444443 344555543 333332 34433 3433334569999999999999986 44543 3 4588877666
Q ss_pred HHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHhc----CCCCEE
Q 008493 320 YDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSC 393 (563)
Q Consensus 320 ~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~~----~~~P~~ 393 (563)
+.-+ ..+.+.+.|++++...... .+. ..+|......+++.+-.+. +...++.++..++++|+.. .++||+
T Consensus 107 ~~~l-~~A~~~~vPlvvItg~~p~~~~~~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~ 182 (616)
T 2pan_A 107 ITAL-YSASADSIPILCITGQAPRARLHK--EDFQAVDIEAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVL 182 (616)
T ss_dssp HHHH-HHHHHTTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEE
T ss_pred HHHH-HHHHhcCCCEEEEecCCcccccCc--ccccccCHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 6666 5677889999988754332 222 2245444556777776664 4556788888888888762 368999
Q ss_pred EEecCC
Q 008493 394 FRYPRG 399 (563)
Q Consensus 394 i~~~~~ 399 (563)
|-++..
T Consensus 183 l~iP~d 188 (616)
T 2pan_A 183 VDLPFD 188 (616)
T ss_dssp EEEEHH
T ss_pred EEcchh
Confidence 987654
No 70
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=92.69 E-value=1.1 Score=48.43 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=87.5
Q ss_pred HHHHHHHHHhc-CCCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHH
Q 008493 245 FAEALIAEAEV-DKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 317 (563)
Q Consensus 245 ~~~~l~~~~~~-~~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~ 317 (563)
..++|.+.+++ .-+.++.. .|+..+ +.+.+ .+ =|++-+ ..|+++.-+|.|+|.. |...+|. |+++...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIIS---PGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEEC---CCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEC---CCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 34555555544 44444432 334433 33433 33 355554 7999999999999976 7544444 5888876
Q ss_pred HHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhhhhhhcCCCcEE--EecCCHHH----HHHHHHHHHh---
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVV--MAPSDEAE----LFHMVATAAA--- 386 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~~~~~~~p~~~v--~~P~~~~e----~~~~l~~a~~--- 386 (563)
.++--+ ..|...+.|++++...... .+. ..+|......+++.+-.+.. -.|.+..+ +...+++|+.
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 655555 5677889999998744332 222 23555555567777666543 34565333 2234444444
Q ss_pred -cCCCCEEEEecCC
Q 008493 387 -IDDRPSCFRYPRG 399 (563)
Q Consensus 387 -~~~~P~~i~~~~~ 399 (563)
..++||+|-++..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 3478999998864
No 71
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=92.68 E-value=0.65 Score=50.25 Aligned_cols=153 Identities=16% Similarity=0.031 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCEEEEecCCCCCcCh---HHHHHhCCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-ec
Q 008493 238 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IY 312 (563)
Q Consensus 238 ~~~~~~a~~~~l~~~~~~~~~v~~~~~D~~~s~~~---~~~~~~~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~ 312 (563)
+++..+++.+.|.+ ..-+.++.. .|+..+ +.+.+ .+.+.+=....|+++..+|.|+|.. |...++. |+
T Consensus 20 ~~~~a~~lv~~L~~---~GV~~vfg~---PG~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~Ts 92 (565)
T 2nxw_A 20 HMKLAEALLRALKD---RGAQAMFGI---PGDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTY 92 (565)
T ss_dssp CCBHHHHHHHHHHH---TTCCCEEEC---CCGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred CcCHHHHHHHHHHH---cCCCEEEEC---CCcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 35666655555443 233333332 233322 33443 3443444569999999999999986 6544444 47
Q ss_pred hhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCC-CCC--hh-hhhhhhcCCCcEEEecCCHHHHHHHHHHHHh
Q 008493 313 SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--SF-DVTFMACLPNMVVMAPSDEAELFHMVATAAA 386 (563)
Q Consensus 313 ~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~t-H~~--~~-d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~ 386 (563)
++....++--+ ..+.+.+.|++++...... .+.+... |+. .. +..+++.+-.+. +...+++++...+.+|+.
T Consensus 93 GpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~ 170 (565)
T 2nxw_A 93 GAGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPAKAPAEIARVLG 170 (565)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHHHHHHHHHHHHH
Confidence 88776555555 4667789999998754332 2322232 332 22 456777766553 444455555555555543
Q ss_pred ---cCCCCEEEEecCC
Q 008493 387 ---IDDRPSCFRYPRG 399 (563)
Q Consensus 387 ---~~~~P~~i~~~~~ 399 (563)
..++||+|.+++.
T Consensus 171 ~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 171 AARAQSRPVYLEIPRN 186 (565)
T ss_dssp HHHHHTCCEEEEEEGG
T ss_pred HHHhCCCCEEEECChh
Confidence 1369999999865
No 72
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.96 E-value=1.3 Score=48.37 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=87.1
Q ss_pred HHHHHHHHHhc-CCCEEEEecCCCCCcCh---HHHHHhCC-CCeeecccchHHHHHHHHHHhhC-CCeeE-EeechhhHH
Q 008493 245 FAEALIAEAEV-DKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQ 317 (563)
Q Consensus 245 ~~~~l~~~~~~-~~~v~~~~~D~~~s~~~---~~~~~~~p-~r~i~~gi~E~~~~~~a~G~a~~-G~~~~-~~~~~~f~~ 317 (563)
..+.|.+.+++ .-+.++.. .|+..+ +.+.+ .+ =|++-+ ..|+++..+|.|+|.. |...+ +.|+++...
T Consensus 33 ~a~~lv~~L~~~GV~~vFg~---PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~ 107 (604)
T 2x7j_A 33 YIGSFIDEFALSGITDAVVC---PGSRSTPLAVLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAA 107 (604)
T ss_dssp HHHHHHHHHHHHTCCEEEEC---CCSTTHHHHHHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEC---cCcccHHHHHHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHH
Confidence 34555555544 44544443 334433 33433 33 355554 9999999999999986 65434 445888775
Q ss_pred HHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhhhhhhhcCCCcEEE--ecCCH----HHHHHHHHHHHh---
Q 008493 318 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSDE----AELFHMVATAAA--- 386 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d~~~~~~~p~~~v~--~P~~~----~e~~~~l~~a~~--- 386 (563)
.++--+ ..|.+.+.|++++...... .+. ..+|......+++.+-.+... .|.+. .++...+++|+.
T Consensus 108 N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~ 184 (604)
T 2x7j_A 108 NFYPAV-VEAHYSRVPIIVLTADRPHELREV--GAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQ 184 (604)
T ss_dssp TTHHHH-HHHHHHTCCEEEEEEECCGGGSSS--CCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhcCCCEEEEeCCCCHHHhCC--CCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhh
Confidence 555555 4566779999998754332 222 235555555677776665432 34430 015555555544
Q ss_pred -cCCCCEEEEecCCC
Q 008493 387 -IDDRPSCFRYPRGN 400 (563)
Q Consensus 387 -~~~~P~~i~~~~~~ 400 (563)
..++||+|-++...
T Consensus 185 ~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 185 KRPMGPVHVNVPLRE 199 (604)
T ss_dssp SSSCCEEEEEEECCS
T ss_pred CCCCCcEEEEcccCc
Confidence 35689999988663
No 73
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.65 E-value=1.3 Score=47.76 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=78.3
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCee-EEeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 356 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~-~~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d 356 (563)
=|++.+ ..|+++..+|.|+|.. |... ++.|+++....++--+ ..|...+.|++++...... .+..-..+|...+
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq 125 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQ 125 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCH
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCCcccccCH
Confidence 455554 9999999999999987 6543 4445888876666665 4667789999998754332 1210123555555
Q ss_pred hhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 357 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 357 ~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
..+++.+-.+ .+...+++++...+.+|+. ..++||+|-++..
T Consensus 126 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 126 MNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 5677776665 4555667777777777765 2568999988765
No 74
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=91.05 E-value=1.4 Score=47.60 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=70.2
Q ss_pred CeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCCh---
Q 008493 282 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 354 (563)
Q Consensus 282 r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~--- 354 (563)
|++. ...|++++.+|.|+|.. | .+++. |+++....++--+ ..+...+.|++++...... .+..-..|+..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 4444 58999999999999976 7 54444 5788775565555 4566789999998754332 11111222211
Q ss_pred ---hhhhhhhcCCCcEEEecCCHHHHHH----HHHHHHhcCCCCEEEEecCCC
Q 008493 355 ---FDVTFMACLPNMVVMAPSDEAELFH----MVATAAAIDDRPSCFRYPRGN 400 (563)
Q Consensus 355 ---~d~~~~~~~p~~~v~~P~~~~e~~~----~l~~a~~~~~~P~~i~~~~~~ 400 (563)
+...+++.+-.+. +...+++++.. .++.|+.. ++||+|.++...
T Consensus 121 ~~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 2346777766553 44455444444 44444433 599999988764
No 75
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=90.92 E-value=1.7 Score=46.81 Aligned_cols=116 Identities=10% Similarity=-0.010 Sum_probs=77.7
Q ss_pred CCeeecccchHHHHHHHHHHhhC-CCeeE-EeechhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCChhh
Q 008493 281 TRCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 356 (563)
Q Consensus 281 ~r~i~~gi~E~~~~~~a~G~a~~-G~~~~-~~~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~~d 356 (563)
=|++.+ ..|+++..+|.|+|.. |.-.+ +.|+++....++--+ ..+...+.|++++...... .+..-..+|...+
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq 123 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQ 123 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCH
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccccH
Confidence 455555 9999999999999987 65433 445888876666665 4667789999998754432 1210123555555
Q ss_pred hhhhhcCCCcEEEecCCHHHHHHHHHHHHh----cCCCCEEEEecCC
Q 008493 357 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 399 (563)
Q Consensus 357 ~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~----~~~~P~~i~~~~~ 399 (563)
..+++.+-.+. +...+++++...+++|+. ..++||+|-++..
T Consensus 124 ~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 124 MNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 67788776653 444566667777776665 2568999988765
No 76
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=90.08 E-value=1.8 Score=46.74 Aligned_cols=117 Identities=10% Similarity=0.006 Sum_probs=73.0
Q ss_pred CCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCC-
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG- 353 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~- 353 (563)
.++--+-....|++++.+|.|+|.. | ..++. |+++....++--+ ..+...+.|++++...... .+.+...||.
T Consensus 61 ~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~ 138 (570)
T 2vbf_A 61 REDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTL 138 (570)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred CCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeec
Confidence 3433334469999999999999954 8 44443 4788776666666 4667789999998754332 1222233441
Q ss_pred ----h-hhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCC
Q 008493 354 ----S-FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 354 ----~-~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
. +...+++.+..+.... .+ +++...++.|++ ..++||+|-++..
T Consensus 139 ~~~~~~~~~~~~~~~tk~~~~v-~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 139 ADGDFKHFMKMHEPVTAARTLL-TA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp SSSCCCHHHHHTGGGCSEEEEC-CT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cccchHHHHHHhhhhEEEEEEE-Cc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 1 1345677776654443 44 666666666554 1358999988654
No 77
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=87.47 E-value=3.3 Score=44.41 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCCCeeecccchHHHHHHHHHHhhC-CCeeEEe-echhhHHHHHHHHHHHhccCCCCeEEEEeCCCC--CCCCCCCCCCh
Q 008493 279 FPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS 354 (563)
Q Consensus 279 ~p~r~i~~gi~E~~~~~~a~G~a~~-G~~~~~~-~~~~f~~~a~dqi~~~a~~~~~pv~~v~~~~G~--~g~~G~tH~~~ 354 (563)
.++--+-....|++++.+|.|+|.. | .+++. |+++....++--+ ..+...+.|++++...... .+.+...|+..
T Consensus 41 ~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~ 118 (552)
T 1ovm_A 41 SPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTL 118 (552)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred CCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhccccccccc
Confidence 3443344569999999999999976 6 54444 4777765555555 4667889999998754332 11111222111
Q ss_pred ------hhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEecCC
Q 008493 355 ------FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 399 (563)
Q Consensus 355 ------~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~~~ 399 (563)
+...+++.+-.+....+. .++...+++|+. ..++||+|-++..
T Consensus 119 g~~~~q~~~~~~~~~tk~~~~v~~--~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 119 GDGEFRHFYHMSEPITVAQAVLTE--QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp SSSCCSHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred CCCcHHHHHHHHHhheeEEEEEcc--ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 223567766665544443 445455554443 1259999988664
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=82.81 E-value=3.8 Score=41.60 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=59.0
Q ss_pred HHHHHHHHhhC----C-CeeEEeechh--hHH-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC-----Chhhhhh
Q 008493 293 AVTFAAGLACE----G-LKPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----GSFDVTF 359 (563)
Q Consensus 293 ~~~~a~G~a~~----G-~~~~~~~~~~--f~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~-----~~~d~~~ 359 (563)
.+.+|+|+|++ | -++++.++++ |.+ ..++.+ +.++..++|+++++..-++ +..++++. ...+.+-
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGI-NFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHH-HHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHH-HHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHH
Confidence 34556666654 2 2444444443 432 345565 8889999999998865553 11112111 1222222
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
.-.+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 225 a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 225 AAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 224565543 55589999999999976 3578998865
No 79
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=80.44 E-value=7.8 Score=38.64 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=29.6
Q ss_pred hhhc-CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEeccc
Q 008493 161 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 205 (563)
Q Consensus 161 ~~~~-G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~g 205 (563)
++.. ||.++.+ .|..+....++.|.+ .++|++|...+...
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~l~ 178 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKRLY 178 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGGGS
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchHhh
Confidence 4444 7777666 899999999998887 47899987654433
No 80
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=80.41 E-value=6 Score=43.63 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=56.3
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEec---CCHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P---~~~~e 376 (563)
+.++++.++.- + ..++.+ +.++..++| ++++....++ +.+++++.. ..|+ ..+..+ ||.++.+ .|..+
T Consensus 173 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~ 249 (690)
T 3m49_A 173 HYTYAICGDGDLMEGVSAEAS-SLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEA 249 (690)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHH
T ss_pred CeEEEEECchhhhhccHHHHH-HHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHH
Confidence 34555555543 3 466776 788999987 6666655554 233433321 2222 344543 8899888 78999
Q ss_pred HHHHHHHHHhcCCCCEEEEec
Q 008493 377 LFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+...+++|.+..++|++|...
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999886536889888653
No 81
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=80.11 E-value=4.1 Score=41.82 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHhhC----C-CeeEEeechh--hH-HHHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCC--Chhhhh-hhhc
Q 008493 294 VTFAAGLACE----G-LKPFCAIYSS--FM-QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVT-FMAC 362 (563)
Q Consensus 294 ~~~a~G~a~~----G-~~~~~~~~~~--f~-~~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~--~~~d~~-~~~~ 362 (563)
+..|+|+|++ | -+.++.++++ |. -..++.+ +.++..++|+++++..-++ +..++++. ...++. ....
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a 245 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF-NFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPG 245 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH-HHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHH-HHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHH
Confidence 3566666664 2 2334444433 43 2334665 8888899999998865554 21222221 122322 1222
Q ss_pred CCCcEE--EecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 363 LPNMVV--MAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 363 ~p~~~v--~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
-|+.+ +.=.|+.++...++.|++ ..++|++|..
T Consensus 246 -~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 246 -YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp -GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 24444 344588999999988875 3578988865
No 82
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=79.78 E-value=4.7 Score=44.53 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=55.0
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCC-CChhhh-hhhhcCCCcEEE-ecC---CHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVM-APS---DEA 375 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH-~~~~d~-~~~~~~p~~~v~-~P~---~~~ 375 (563)
+.++++.++.. + ..++.+ +.++..++| ++++....++ +.++++. +...|+ ..+.. -||.++ .-- |+.
T Consensus 149 ~~vv~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEAS-SLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEA-YGWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-HTCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHHH-HHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHh-cCCeEEEEecCCCCHH
Confidence 34555555543 3 456776 788899988 7777765554 2223322 112233 24444 378887 433 789
Q ss_pred HHHHHHHHHHhcCCCCEEEEec
Q 008493 376 ELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 376 e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
++...+++|.+..++|++|...
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEE
Confidence 9999999987645789888653
No 83
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=79.55 E-value=6.8 Score=43.01 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=53.0
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEec---CCHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P---~~~~e 376 (563)
+.++++.++.- + ..++.+ +.++..++| ++++....++ +.++++... ..|+ ..+..+ ||.++.+ .|..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSHEAC-SLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHHHHH-HHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 44555555543 3 456776 788899998 6666655553 222332221 1222 345554 7887733 37899
Q ss_pred HHHHHHHHHhcCCCCEEEEec
Q 008493 377 LFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+...+++|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999986535899888653
No 84
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=79.40 E-value=9.1 Score=41.67 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=65.0
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHH-HHhhcccCCCEEEEEeCCCCcc--cCcccCCCCCCCchhhH
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA-MNNAGYLDSDMIVILNDNKQVS--LPTATLDGPIPPVGALS 108 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Ea-l~~a~~~~~pli~iv~nN~~~s--~~t~~~~~~~~~~~~l~ 108 (563)
.+++|.|+|++- -++++...++.. + ..++. ++.++..++|+++++.+.+... .+||.+
T Consensus 373 ~~~~a~G~A~~G-----~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~----------- 433 (621)
T 2o1s_A 373 AVTFAAGLAIGG-----YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG----------- 433 (621)
T ss_dssp HHHHHHHHHHTT-----CEEEEEEETTGG-G--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB-----------
T ss_pred HHHHHHHHHHCC-----CEEEEEehHhHH-H--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc-----------
Confidence 366788888752 477888888865 2 44444 6778888999999996655211 011110
Q ss_pred HHHhhhhcChhhHHHHHHHhhhhhccCCchHHHHHHHHHHHhccccCCCcchhhhc-CceEeeccCCCCHHHHHHHHHHH
Q 008493 109 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEV 187 (563)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~dG~d~~~l~~a~~~a 187 (563)
.+|++ ++... |+.++.+ .|..++...++.|
T Consensus 434 -----------------------------~~d~~-----------------~~~~iP~l~v~~P---~d~~e~~~~l~~a 464 (621)
T 2o1s_A 434 -----------------------------AFDLS-----------------YLRCIPEMVIMTP---SDENECRQMLYTG 464 (621)
T ss_dssp -----------------------------CSHHH-----------------HTTTSTTCEEECC---SSHHHHHHHHHHH
T ss_pred -----------------------------hHHHH-----------------HHhcCCCCEEEec---CCHHHHHHHHHHH
Confidence 01211 24444 7776666 8999999999988
Q ss_pred hccCCCCcEEEEEE
Q 008493 188 KNTKTTGPVLIHVV 201 (563)
Q Consensus 188 ~~~~~~~P~~I~v~ 201 (563)
.+. .++|++|...
T Consensus 465 ~~~-~~~Pv~i~~~ 477 (621)
T 2o1s_A 465 YHY-NDGPSAVRYP 477 (621)
T ss_dssp HHC-CSSCEEEECC
T ss_pred HHc-CCCCEEEEeC
Confidence 862 3789887654
No 85
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=78.70 E-value=5.4 Score=43.95 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=54.5
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCC-CChhhh-hhhhcCCCcEEE-e--cCCHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVM-A--PSDEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH-~~~~d~-~~~~~~p~~~v~-~--P~~~~e 376 (563)
+.++++.++.. + ..++.+ +.++..++| ++++....++ +.++++. +...|+ ..+.. -||.++ . =.|+.+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHHH-HHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHH
Confidence 34555555543 3 457776 788889988 7777665554 2223322 112233 24454 477776 3 348999
Q ss_pred HHHHHHHHHhcCCCCEEEEe
Q 008493 377 LFHMVATAAAIDDRPSCFRY 396 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~ 396 (563)
+...+++|.+..++|++|..
T Consensus 224 l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 99999998764578988765
No 86
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=76.71 E-value=9.3 Score=42.05 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=56.5
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEE-ec---CCHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVM-AP---SDEA 375 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~-~P---~~~~ 375 (563)
+.++++.++.- + ..++.+ +.++..++| ++++....++ +.++++... ..|+ ..+.. -||.++ .- .|+.
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEAL-SLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHHH-HHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 34555555542 3 447776 788888987 7777665554 223333221 2333 24555 488888 44 7899
Q ss_pred HHHHHHHHHHhcCCCCEEEEec
Q 008493 376 ELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 376 e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
++...+++|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999987656889988653
No 87
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=74.53 E-value=9.7 Score=38.50 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=55.6
Q ss_pred HHHHHHHhh----CC-CeeEEeechh--hHHH-HHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC-----CChhhhhhh
Q 008493 294 VTFAAGLAC----EG-LKPFCAIYSS--FMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDVTFM 360 (563)
Q Consensus 294 ~~~a~G~a~----~G-~~~~~~~~~~--f~~~-a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH-----~~~~d~~~~ 360 (563)
++.|.|+|+ .+ -++++.+.++ |.+- .+|.+ +.++..++|+++++..-++ +..+++. ....+++-.
T Consensus 150 l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~a 227 (367)
T 1umd_A 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGI-NFAAVQGAPAVFIAENNFY-AISVDYRHQTHSPTIADKAHA 227 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHTTCSEEEEEEECSE-ETTEEHHHHCSSSCSGGGGGG
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHH-HHHHHhCcCEEEEEecCCe-eeccChhhccCCCCHHHHHHH
Confidence 445555554 34 2344444433 4322 45555 7888899998888865553 2222211 112222212
Q ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 361 ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 361 ~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
-.+|.+. +.-.|+.++...++.|++ ..++|++|..
T Consensus 228 ~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 228 FGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp TTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2355554 466788888887777765 3578988865
No 88
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=74.33 E-value=7.5 Score=42.39 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=60.9
Q ss_pred HHHHHHHHhhCC------------CeeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC-Chh
Q 008493 293 AVTFAAGLACEG------------LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSF 355 (563)
Q Consensus 293 ~~~~a~G~a~~G------------~~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~-~~~ 355 (563)
.+++|.|+|++- -+.++.+.++.- + ..++.+ +.++..++| ++++....++ +-+++++. ...
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal-~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEAC-SLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 355666666642 244555555543 3 567776 788999987 6666665554 12222221 112
Q ss_pred hh-hhhhcCCCcEEEec--CCHHHHHHHHHHHHhcCCCCEEEEec
Q 008493 356 DV-TFMACLPNMVVMAP--SDEAELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 356 d~-~~~~~~p~~~v~~P--~~~~e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
|+ ..+..+ ||.++.- .|..++...+++|.+ .++|++|...
T Consensus 197 d~~~~~~a~-G~~~~~vdGhd~~~l~~al~~A~~-~~~P~lI~v~ 239 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVLSINGHDYEEINKALEQAKK-STKPCLIIAK 239 (632)
T ss_dssp CHHHHHHHT-TCEEEEEETTCHHHHHHHHHHHHT-CSSCEEEEEE
T ss_pred hHHHHHHHc-CCeEEEEeeCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 22 345554 7888732 378999999999865 6899888653
No 89
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=73.04 E-value=12 Score=41.42 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=55.3
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC-Chhhh-hhhhcCCCcEEEec---CCHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~-~~~d~-~~~~~~p~~~v~~P---~~~~e 376 (563)
+.++++.++.- + ..+|.+ +.++..++| ++++...-++ +-+|++.. ..+++ ..+..+ ||.++.. .|..+
T Consensus 169 ~~v~~~~GDG~l~eG~~~EAl-~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~a 245 (700)
T 3rim_A 169 HYIYVIASDGDIEEGVTSEAS-SLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVG 245 (700)
T ss_dssp CCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHH
T ss_pred CeEEEEECCcccccChHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHH
Confidence 34455555542 3 456776 889999997 7777765554 11222211 12222 234443 7887765 58999
Q ss_pred HHHHHHHHHhcCCCCEEEEec
Q 008493 377 LFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+...+++|....++|++|...
T Consensus 246 l~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 246 IEEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEE
Confidence 999999986546899988664
No 90
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=72.40 E-value=6.1 Score=43.70 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=55.1
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC-Chhhh-hhhhcCCCcEEEec---CCHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP---SDEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~-~~~d~-~~~~~~p~~~v~~P---~~~~e 376 (563)
+.++++.++.- + ..++.+ +.++..++| ++++....++ +.+++++. ...|+ ..+..+ ||.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISHEAC-SLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHHHHH-HHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 44555555543 3 466776 788999998 6666665553 22233322 12222 345553 7777765 58999
Q ss_pred HHHHHHHHHhcCCCCEEEEec
Q 008493 377 LFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+...+++|.+ .++|++|...
T Consensus 265 l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEc
Confidence 9999999855 6899888653
No 91
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=71.60 E-value=16 Score=36.48 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=25.3
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEE
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 201 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~ 201 (563)
|+.++.+ .|..+....++.|.+ .++|++|-..
T Consensus 153 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~~ 184 (341)
T 2ozl_B 153 GLKVVSP---WNSEDAKGLIKSAIR--DNNPVVVLEN 184 (341)
T ss_dssp TCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEC
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--cCCCEEEEEC
Confidence 6666656 899999999998887 5789987664
No 92
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=71.13 E-value=15 Score=36.69 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=26.8
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEecc
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 204 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~~ 204 (563)
|+.++.+ .|..+....++.+.+ .++|++|-.....
T Consensus 159 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~~l 193 (342)
T 2bfd_B 159 GIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPKIL 193 (342)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEGGG
T ss_pred CcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecchh
Confidence 6766656 899999999998886 4789998665443
No 93
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=70.91 E-value=7.4 Score=39.36 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=57.6
Q ss_pred HHHHHHHHhhC----C-CeeEEeechhh--HH-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCC--CCCChhhhh-hhh
Q 008493 293 AVTFAAGLACE----G-LKPFCAIYSSF--MQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP--THCGSFDVT-FMA 361 (563)
Q Consensus 293 ~~~~a~G~a~~----G-~~~~~~~~~~f--~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~--tH~~~~d~~-~~~ 361 (563)
.+.+|+|+|++ | -++++.++++. .+ ..++.+ +.++..++|+++++.+-++ +...+ .+....++. -..
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal-n~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~ 222 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY-NMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGD 222 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH-HHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH-HHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhC
Confidence 34566666654 2 34445554443 22 345665 8889999999988865443 11111 011111111 112
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 362 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 362 ~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
.+|+++| .=.|+.++...++.|++ ..++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3565543 55689999999988875 3578998855
No 94
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=70.91 E-value=8.6 Score=39.48 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=56.0
Q ss_pred HHHHHHHhhC----C-CeeEEeechh--hHH-HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCC--C-Chhhhh-hh-
Q 008493 294 VTFAAGLACE----G-LKPFCAIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--C-GSFDVT-FM- 360 (563)
Q Consensus 294 ~~~a~G~a~~----G-~~~~~~~~~~--f~~-~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH--~-~~~d~~-~~- 360 (563)
+.+|+|+|++ | -+.++.++++ +.+ ..++.+ +.++..++|+++++...++ +...+++ . ...++. ..
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~ 264 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTAL-TFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGV 264 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHH-HHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHH
Confidence 3556666654 2 2344444444 332 335555 7888899998888865553 1111211 1 122221 11
Q ss_pred -hcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEec
Q 008493 361 -ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYP 397 (563)
Q Consensus 361 -~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~~ 397 (563)
-.+|.+. +.=.|+.++...++.|++ ..++|++|-..
T Consensus 265 a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 304 (407)
T 1qs0_A 265 GCGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIEWV 304 (407)
T ss_dssp HTTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred HcCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 2334433 344588899999988875 25789888553
No 95
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=70.72 E-value=13 Score=40.60 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=54.6
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCCC-hhhh-hhhhcCCCcEEEecC---CHHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS---DEAE 376 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~~-~~d~-~~~~~~p~~~v~~P~---~~~e 376 (563)
+.++++.++.. + ..++.+ +.++..++| ++++....++ +.++++... ..|+ ..+.. -||.++.+. |+.+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAA-SLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHH-HHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 44555555543 3 456776 788899988 7777765554 112222111 2233 34555 488887333 7999
Q ss_pred HHHHHHHHHhcCCCCEEEEec
Q 008493 377 LFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 377 ~~~~l~~a~~~~~~P~~i~~~ 397 (563)
+...+++|.+ .++|++|...
T Consensus 228 l~~al~~a~~-~~~P~lI~~~ 247 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVR 247 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEEE
Confidence 9999999876 6889887653
No 96
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=70.12 E-value=11 Score=41.17 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=57.7
Q ss_pred HHHHHHHhhC----C-CeeEEeechhhH-H--HHHHHHHHHhccCCCCeEEEEeCCCCCCCCCCCCCChh----------
Q 008493 294 VTFAAGLACE----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSF---------- 355 (563)
Q Consensus 294 ~~~a~G~a~~----G-~~~~~~~~~~f~-~--~a~dqi~~~a~~~~~pv~~v~~~~G~~g~~G~tH~~~~---------- 355 (563)
+++|.|+|++ | -+.++++.++.. + ..++.+ +.++..++|++++....++ +..+++.....
T Consensus 129 l~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL-~~A~~~~~pli~IvnnN~~-~i~~~~~~~~~~~~~l~~~~~ 206 (629)
T 2o1x_A 129 LTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL-NTIGDMGRKMLIVLNDNEM-SISENVGAMNKFMRGLQVQKW 206 (629)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH-HHHHHHCCSEEEEEEECSB-SSSBCCSSHHHHC--------
T ss_pred HhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH-HHHHhhCCCEEEEEECCCC-CCCCChhHHHHHHHHHhhchh
Confidence 4556666665 3 345555544432 2 456776 7888888999988865553 22222210000
Q ss_pred ---------------------------h-h---------hhhhcCCCcEEE---ecCCHHHHHHHHHHHHhcCCCCEEEE
Q 008493 356 ---------------------------D-V---------TFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFR 395 (563)
Q Consensus 356 ---------------------------d-~---------~~~~~~p~~~v~---~P~~~~e~~~~l~~a~~~~~~P~~i~ 395 (563)
| + .++.. -|+..+ ...|..++...+++|.+ .++|++|.
T Consensus 207 y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea-~G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI~ 284 (629)
T 2o1x_A 207 FQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAA-MGVRYVGPVDGHNVQELVWLLERLVD-LDGPTILH 284 (629)
T ss_dssp -------------------------------------CCCTTGG-GTCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEEE
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHh-cCCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEEE
Confidence 1 1 12222 244444 55689999999999965 57898876
Q ss_pred ec
Q 008493 396 YP 397 (563)
Q Consensus 396 ~~ 397 (563)
..
T Consensus 285 v~ 286 (629)
T 2o1x_A 285 IV 286 (629)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 97
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=69.26 E-value=15 Score=40.36 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=54.6
Q ss_pred eeEEeechhhH-H--HHHHHHHHHhccCCC-CeEEEEeCCCCCCCCCCCCC-Chhhh-hhhhcCCCcEEEec-C---CHH
Q 008493 306 KPFCAIYSSFM-Q--RAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAP-S---DEA 375 (563)
Q Consensus 306 ~~~~~~~~~f~-~--~a~dqi~~~a~~~~~-pv~~v~~~~G~~g~~G~tH~-~~~d~-~~~~~~p~~~v~~P-~---~~~ 375 (563)
+.++++.++.. + ..++.+ +.++..++ |++++....++ +.++++.. ...|+ ..+.. -||.++.+ - |+.
T Consensus 160 ~~v~~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEAC-SLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEA-LGWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHHH-HHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHh-CCCEEEEEecCCCCHH
Confidence 34555555543 3 467776 78888897 57777765554 11222211 12232 34555 48888733 3 788
Q ss_pred HHHHHHHHHHhcCCCCEEEEec
Q 008493 376 ELFHMVATAAAIDDRPSCFRYP 397 (563)
Q Consensus 376 e~~~~l~~a~~~~~~P~~i~~~ 397 (563)
++...+++|.+..++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999986545789888653
No 98
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=66.96 E-value=31 Score=37.40 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 32 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 32 ~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
.+++|.|+|++- ..+++++.++++.. ..++.+..++..++|+++++..-+
T Consensus 367 ~v~~a~G~A~~G----~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g 416 (616)
T 3mos_A 367 MVSIAVGCATRN----RTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCG 416 (616)
T ss_dssp HHHHHHHHHGGG----CCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBS
T ss_pred HHHHHHHHHHcC----CCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCC
Confidence 366777777753 23456678999864 567888888888899998876555
No 99
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=66.57 E-value=9.4 Score=31.02 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=45.3
Q ss_pred CcEEEEEech----hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHH
Q 008493 427 ERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 427 ~dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~ 495 (563)
.+|+|.+.++ ....|..|.+.|++.|++...+++..-.+ -.+.+.+.. ..+=+.|++.....||+...
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~-~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM-LRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHH-HHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHH-HHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 4688888873 67889999999999999999999863211 112333332 22345677776557887644
No 100
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=61.19 E-value=11 Score=32.27 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=43.2
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChH
Q 008493 428 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFG 493 (563)
Q Consensus 428 dv~iv~~G----~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g 493 (563)
.|+|.+.| .....|..|.+.|++.|++...+++.. .|--.+.+.+.. ..+=++|+++....||+.
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d 105 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCD 105 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHH
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChH
Confidence 57777777 566789999999999999999999864 221122333322 223356777765578874
No 101
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=59.54 E-value=44 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEec
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~ 203 (563)
|+.++.+ .|..+....++.+.+ .++|++|-....
T Consensus 141 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~~ 174 (324)
T 1w85_B 141 GLKVVIP---STPYDAKGLLISAIR--DNDPVIFLEHLK 174 (324)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEETT
T ss_pred CCEEEee---CCHHHHHHHHHHHHH--cCCCEEEEechH
Confidence 6666555 899999999988886 578999865443
No 102
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=59.38 E-value=13 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=44.3
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHH
Q 008493 427 ERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGS 494 (563)
Q Consensus 427 ~dv~iv~~G----~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~ 494 (563)
..|+|.+-| +....|..|.+.|++.|++...+|+.. .|--.+.+.+.. ..+=+.|+++....||+..
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~ 87 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDI 87 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHH
Confidence 467777776 456789999999999999999999864 121112233332 2334677777655788753
No 103
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=58.24 E-value=30 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.3
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEec
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~ 203 (563)
|+.++.+ .|..+....++.+.+ .++|++|.....
T Consensus 189 nl~V~~P---sd~~e~~~ll~~A~~--~~~Pv~i~~p~~ 222 (369)
T 1ik6_A 189 GLVVVMP---STPYNAKGLLKAAIR--GDDPVVFLEPKI 222 (369)
T ss_dssp TCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred CcEEEec---CCHHHHHHHHHHHHh--CCCCEEEEEehh
Confidence 6766656 899999999998886 678999865543
No 104
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=54.82 E-value=11 Score=30.41 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=44.0
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCCCCChH
Q 008493 427 ERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFG 493 (563)
Q Consensus 427 ~dv~iv~~G----~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~~gg~g 493 (563)
.+++|.+.| .....|..|.+.|++.|++...+++.. .|--.+.+.+... .+=++|+++....||+.
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d 85 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLD 85 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHH
Confidence 468898888 566789999999999999999999864 1211123333322 22346666665578875
No 105
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=51.86 E-value=42 Score=31.05 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 440 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 440 ~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
.+..+++.|++.|.+++++++.. .+|.+...+.++.++.||+.=--+.+++...+..++
T Consensus 48 L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~i 106 (218)
T 3rpe_A 48 LTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHH
Confidence 34455677888899999999974 678777777888888888776555567776666654
No 106
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=51.24 E-value=16 Score=31.16 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=61.5
Q ss_pred cEEEEEechhHH-HHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHHcCCC
Q 008493 428 RVALLGYGTAVQ-SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 506 (563)
Q Consensus 428 dv~iv~~G~~~~-~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~~~~~ 506 (563)
++.+-+.|...+ .--.|.+.|++.||++.-.. -++++.+. +...+.||+++++. ..+... .
T Consensus 31 ~~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~~~---sr~l~~~~----~~~~D~Ii~m~~~~---------~~~~p~--~ 92 (139)
T 1jl3_A 31 EWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQT---SDIIDSDI----LNNADLVVTLCGDA---------ADKCPM--T 92 (139)
T ss_dssp TEEEEEEESSCCCCCHHHHHHHHHTTCCCTTCC---CCBCCHHH----HTTCSEEEECSHHH---------HHHCCC--C
T ss_pred CEEEEcCcCCCCCCCHHHHHHHHHcCCCcccCc---cCcCCHHH----hhcCCEEEEeCchH---------HhhCCC--C
Confidence 355556555432 11245566778888764322 34444432 34678999997641 112111 1
Q ss_pred CCCCceEEeecCCcccCCCCHHHHHHHcCCCHHHHHHHHHHHhcccc
Q 008493 507 DGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 553 (563)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~g~~~~ll~~~gl~~~~I~~~i~~~~~~~~ 553 (563)
+.........++|.|...|+.++.++.|.-.-+.|.+++..++.+.|
T Consensus 93 ~~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~~ 139 (139)
T 1jl3_A 93 PPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETGK 139 (139)
T ss_dssp CTTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11223334466776643366667777777778888888888887653
No 107
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=51.04 E-value=38 Score=31.98 Aligned_cols=64 Identities=20% Similarity=0.059 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccccCc--------HHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 439 QSCLAASALLESNGLRLTVADARFCKPLD--------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~--------~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
..+..+++.|++.|++++++++..+..++ .+.+.+.+..++.||+.=--+.+++...+..++-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44445567777789999999998753211 34555666777888877665678888888887754
No 108
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=50.41 E-value=34 Score=30.74 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=41.7
Q ss_pred hHHHHHHHHHH-HHhCCCceEEeecccccc----------CcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHH
Q 008493 437 AVQSCLAASAL-LESNGLRLTVADARFCKP----------LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 501 (563)
Q Consensus 437 ~~~~~~~Aa~~-L~~~Gi~v~vi~~~~l~P----------f~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~ 501 (563)
.-..+..+++. |++.|.+++++++..+.. =+.+.+.+.+..++.||+.=--+.+++...+..++-
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 33455556677 888899999999876431 123344455566777776655455777777777664
No 109
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=50.18 E-value=58 Score=37.12 Aligned_cols=108 Identities=10% Similarity=-0.068 Sum_probs=60.9
Q ss_pred ecccchHHHHHHHHHHhhC----C-----C-eeEEeechhhH----HHHHHHHHHHhccCCCC---eEEEEeCCCCCCCC
Q 008493 285 DVGIAEQHAVTFAAGLACE----G-----L-KPFCAIYSSFM----QRAYDQVVHDVDLQKLP---VRFAMDRAGLVGAD 347 (563)
Q Consensus 285 ~~gi~E~~~~~~a~G~a~~----G-----~-~~~~~~~~~f~----~~a~dqi~~~a~~~~~p---v~~v~~~~G~~g~~ 347 (563)
+.+..+.. +.+|+|+|++ + . ...+.++++.. -..+|.+ |.++..++| +++++..-++ +..
T Consensus 319 ~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Eal-n~A~~~~lp~gg~I~vv~nN~~-~is 395 (933)
T 2jgd_A 319 NPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETL-NMSKARGYEVGGTVRIVINNQV-GFT 395 (933)
T ss_dssp CCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHH-HHTTSTTTCCSCCEEEEEECC-----
T ss_pred cCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHH-HHhhccCCCCCceEEEEEeCCc-ccc
Confidence 44444443 6777777765 2 1 23333444432 2567776 899999999 7777754443 211
Q ss_pred C-CCC-----CChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---cCCCCEEEEe
Q 008493 348 G-PTH-----CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 396 (563)
Q Consensus 348 G-~tH-----~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~---~~~~P~~i~~ 396 (563)
. ++. ....+.+-...+|.+.| .-.|+.++...++.|.+ ...+|++|-.
T Consensus 396 t~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 396 TSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp -----------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2 222 12333333334565544 77889999999988864 3468987754
No 110
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=48.46 E-value=90 Score=30.50 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.8
Q ss_pred CceEeeccCCCCHHHHHHHHHHHhccCCCCcEEEEEEec
Q 008493 165 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 203 (563)
Q Consensus 165 G~~~~~~~dG~d~~~l~~a~~~a~~~~~~~P~~I~v~t~ 203 (563)
|+.++.+ .|..+....++.+.+ .++|++|.....
T Consensus 142 ~~~V~~P---~d~~e~~~~l~~a~~--~~~Pv~i~~p~~ 175 (324)
T 1umd_B 142 GLKVVAV---STPYDAKGLLKAAIR--DEDPVVFLEPKR 175 (324)
T ss_dssp TCEEEEC---CSHHHHHHHHHHHHH--CSSCEEEEEEGG
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--cCCCEEEEechH
Confidence 6666656 889999999988886 678998864433
No 111
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=46.75 E-value=46 Score=26.05 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=45.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-----cCCEEEEEeCCC-CCCh-HHHHHHHH
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGS-IGGF-GSHVVQFL 500 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-----~~~~vvvvE~~~-~gg~-g~~v~~~l 500 (563)
.|+|.+. +....|..|.+.|++.|++...+|+.. |.+...++.+ ++=++|++.+.. ..|+ ..+|.+.|
T Consensus 5 ~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 5 ALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKL 79 (92)
T ss_dssp CEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHH
T ss_pred cEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHH
Confidence 5666664 455779999999999999999999862 3344433332 223667776544 3444 35676777
Q ss_pred HHc
Q 008493 501 AQD 503 (563)
Q Consensus 501 ~~~ 503 (563)
.+.
T Consensus 80 ~el 82 (92)
T 2lqo_A 80 VKI 82 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 112
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=46.74 E-value=58 Score=36.78 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccCCCC---eEEEEeCCCCCCCCCCC-----CCChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh--
Q 008493 317 QRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPT-----HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA-- 386 (563)
Q Consensus 317 ~~a~dqi~~~a~~~~~p---v~~v~~~~G~~g~~G~t-----H~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~-- 386 (563)
...+|.+ |.++..++| +++++..-++ |..+++ .....+.+-.-.+|.+. +.=.|+.++...++.|++
T Consensus 293 G~v~Eal-n~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~-VdG~D~~av~~a~~~A~~~a 369 (868)
T 2yic_A 293 GVVAETL-NLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFH-VNGDDPEACAWVARLAVDFR 369 (868)
T ss_dssp HHHHHHH-TTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEE-EETTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEE-EeCCCHHHHHHHHHHHHHHH
Confidence 3566766 889999998 8888755443 222221 11233333333456554 366789999999998874
Q ss_pred -cCCCCEEEEe
Q 008493 387 -IDDRPSCFRY 396 (563)
Q Consensus 387 -~~~~P~~i~~ 396 (563)
..++|++|-.
T Consensus 370 r~~~~PvlIe~ 380 (868)
T 2yic_A 370 QAFKKDVVIDM 380 (868)
T ss_dssp HHHCCCEEEEE
T ss_pred HhCCCCEEEEE
Confidence 3578998865
No 113
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=46.69 E-value=83 Score=35.59 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCCC-eEEEEeCCCCCCCCCCCCC---Chhhh-hhhhcCCCcEEEec
Q 008493 318 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC---GSFDV-TFMACLPNMVVMAP 371 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p-v~~v~~~~G~~g~~G~tH~---~~~d~-~~~~~~p~~~v~~P 371 (563)
.+++.+ +.++..+++ ++++...-+. .-+|++.. ...++ ..++. .+|.++.-
T Consensus 237 ~~~EAl-~~A~~~~L~nli~Vvn~N~~-si~~~v~~~~~~~~~l~~~~~~-~G~~~~~v 292 (886)
T 2qtc_A 237 ESKGAI-TIATREKLDNLVFVINCNLQ-RLDGPVTGNGKIINELEGIFEG-AGWNVIKV 292 (886)
T ss_dssp HHHTTH-HHHHHTTCTTEEEEEEECSB-CSSSBSCTTSCHHHHHHHHHHH-TTCEEEEE
T ss_pred chHHHH-HHHHHcCCCcEEEEEECCCc-ccCCCccccccccHHHHHHHHh-CCCCEEEE
Confidence 567776 888999975 7777755443 22333332 23343 34555 58877643
No 114
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=45.91 E-value=48 Score=30.82 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhC-CCceEEeecccccc---------------------CcHHHHHHHhccCCEEEEEeCCCCCChHHH
Q 008493 438 VQSCLAASALLESN-GLRLTVADARFCKP---------------------LDHALIRSLAKSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~-Gi~v~vi~~~~l~P---------------------f~~~~i~~~~~~~~~vvvvE~~~~gg~g~~ 495 (563)
...+..+++.|++. |.+++++++..+.+ -+.+.+.+.+..++.||+.=.-+.+++...
T Consensus 18 ~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~ 97 (242)
T 1sqs_A 18 LEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVD 97 (242)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHH
Confidence 34555556778777 99999999875421 123445555667788887665556888888
Q ss_pred HHHHHHH
Q 008493 496 VVQFLAQ 502 (563)
Q Consensus 496 v~~~l~~ 502 (563)
+..++-.
T Consensus 98 lK~~iDr 104 (242)
T 1sqs_A 98 TKNFIER 104 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 115
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=43.73 E-value=53 Score=29.55 Aligned_cols=64 Identities=3% Similarity=0.046 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcH----------HHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDH----------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~----------~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
....+.+++..+.++|.+++++++.-|-.|+. +.+++.++..+.+|++---+.+++...+.+.+
T Consensus 17 ~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~i 90 (190)
T 3u7r_A 17 LNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHH
Confidence 34444555555656799999999876533322 24556677777777665544566666666654
No 116
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=41.89 E-value=39 Score=27.81 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCc-eEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHH
Q 008493 426 GERVALLGYGT----AVQSCLAASALLESNGLR-LTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 426 g~dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~-v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~ 495 (563)
..+|+|.+.++ ....|..|.+.|++.|+. ...+++.. .|--.+.+.+.. ..+=+.|++.....||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 34699999883 678899999999999995 99999862 111112233322 23346777776557887643
No 117
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=41.01 E-value=39 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEeecccccc-CcHH---HHHHHhc-c-----CCEEEEE-eCCCCCChHHH
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKP-LDHA---LIRSLAK-S-----HEVLITV-EEGSIGGFGSH 495 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~P-f~~~---~i~~~~~-~-----~~~vvvv-E~~~~gg~g~~ 495 (563)
....|..|.+.|++.|++...+++..... -+.+ .+.+... . +=+.|++ +....||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 45789999999999999999999975321 1223 3333332 2 2356667 43336887543
No 118
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=40.54 E-value=50 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccccC-------c--HHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 439 QSCLAASALLESNGLRLTVADARFCKPL-------D--HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf-------~--~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
..+..+++.|++.|++++++++..+..+ + .+.+.+.+...+.||++=--+.+++...+..++-.
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDr 148 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQIDH 148 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHHH
Confidence 4455566778878999999999876421 1 23455566667777766544457777777777644
No 119
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=40.24 E-value=86 Score=31.91 Aligned_cols=71 Identities=14% Similarity=-0.053 Sum_probs=48.9
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHH
Q 008493 430 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 500 (563)
Q Consensus 430 ~iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l 500 (563)
++|.|+||. ..|...++.|+++|+++.++++..+..-+...+.+.+.+++.+++-=....+++-..+...+
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 456677765 44555667788899999988888777667777776666777777755544566665555544
No 120
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=39.84 E-value=31 Score=29.38 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=30.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 425 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
+.+++++|+-|+.+...+..++.|.+.|.++.++-.+
T Consensus 17 ~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R 53 (142)
T 3lyu_A 17 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVT 53 (142)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeC
Confidence 3458999999999999998888888888888887333
No 121
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=39.03 E-value=65 Score=29.13 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHH
Q 008493 440 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 501 (563)
Q Consensus 440 ~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~ 501 (563)
.+..+++.|++.|.+++++++.. +.|.+.+.+.+..++.||+.=--+.+++...+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 33445566777799999999974 5677777788888888887766556778777777664
No 122
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.56 E-value=30 Score=28.57 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=43.3
Q ss_pred CcEEEEEech----hHHHHHHHHHHHHhCCCc---eEEeeccccccCcHHHHHHHh-ccCCEEEEEeCCCCCChHHH
Q 008493 427 ERVALLGYGT----AVQSCLAASALLESNGLR---LTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 427 ~dv~iv~~G~----~~~~~~~Aa~~L~~~Gi~---v~vi~~~~l~Pf~~~~i~~~~-~~~~~vvvvE~~~~gg~g~~ 495 (563)
.+|+|.+.++ ....|..|.+.|++.|++ ...+++.. .|--.+.+.+.. ..+=+.|++.....||+...
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~-~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~l 91 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE-DPELREGIKEFSEWPTIPQLYVNKEFIGGCDVI 91 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEecHHHH
Confidence 4688888873 677899999999988998 88888752 110112222221 22346677776557887543
No 123
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.21 E-value=80 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.322 Sum_probs=44.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCE---EEEEeCCCCCChHHHHHHHHHHc
Q 008493 429 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGSIGGFGSHVVQFLAQD 503 (563)
Q Consensus 429 v~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~---vvvvE~~~~gg~g~~v~~~l~~~ 503 (563)
++||.+..--.....-.+.+++.|++++.+.-+. .+ .+.|.++++++.. |+++++ --|+..-..++..-
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspq--el-kdsieelvkkynativvvvvdd---kewaekairfvksl 74 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQ--EL-KDSIEELVKKYNATIVVVVVDD---KEWAEKAIRFVKSL 74 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHH--HH-HHHHHHHTTCCCCEEEEEECSS---HHHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHH--HH-HHHHHHHHHHhCCeEEEEEEcc---HHHHHHHHHHHHhc
Confidence 5667777666677777788889999998877541 11 2467788888763 333333 23666655666543
No 124
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=36.44 E-value=49 Score=26.05 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=40.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHh--ccCCEEEEEeCCCCCChHHH
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~--~~~~~vvvvE~~~~gg~g~~ 495 (563)
.++|.+.- ....|..|.+.|++.|+....+++..-.+. .+.+.+.. ..+=++|+++....||+...
T Consensus 17 ~v~vy~~~-~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 17 KIEIYTWS-TCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CEEEEECT-TCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CEEEEEcC-CChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 56766644 457899999999999999999998642111 12233322 12235666665456777543
No 125
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=35.06 E-value=78 Score=27.87 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhC------CCceEEeeccc--cccCc--------------------HHHHHHHhccCCEEEEEeCCCC
Q 008493 438 VQSCLAASALLESN------GLRLTVADARF--CKPLD--------------------HALIRSLAKSHEVLITVEEGSI 489 (563)
Q Consensus 438 ~~~~~~Aa~~L~~~------Gi~v~vi~~~~--l~Pf~--------------------~~~i~~~~~~~~~vvvvE~~~~ 489 (563)
...+...++.|++. |.+++++++.. +.|++ .+.+.+.+..++.||+.=--+.
T Consensus 17 ~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y~ 96 (191)
T 1t0i_A 17 PEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYN 96 (191)
T ss_dssp HHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceEC
Confidence 34444556667665 78999999875 32221 1234455666777777665556
Q ss_pred CChHHHHHHHHHH
Q 008493 490 GGFGSHVVQFLAQ 502 (563)
Q Consensus 490 gg~g~~v~~~l~~ 502 (563)
+++...+..++-.
T Consensus 97 ~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 97 WGYPAALKNAIDR 109 (191)
T ss_dssp TBCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH
Confidence 7777777777754
No 126
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=34.24 E-value=2.8e+02 Score=27.44 Aligned_cols=72 Identities=10% Similarity=0.166 Sum_probs=47.2
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCCceEEeeccccccCcHH-----HHHHHhccC-CEEEEEeCCCCCChHHHHHHHHH
Q 008493 429 VALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHA-----LIRSLAKSH-EVLITVEEGSIGGFGSHVVQFLA 501 (563)
Q Consensus 429 v~iv~~G~~-~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~-----~i~~~~~~~-~~vvvvE~~~~gg~g~~v~~~l~ 501 (563)
=+|+++|.. ..+...|++.+++.|-++-++++.+-+|-+.+ +|..+-+.+ ...|..-+|.. |..-.+++...
T Consensus 150 PviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~-G~~~~~AAvAl 228 (349)
T 2wqp_A 150 PIILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-DNYACLGAVAL 228 (349)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSS-SSHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCC-cHHHHHHHHHh
Confidence 367788864 68889999999888888888888877775443 444444445 43444444544 46666665543
No 127
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=34.22 E-value=48 Score=29.43 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccCcHH-------------HHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPLDHA-------------LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~-------------~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
.-..+...++.|++.|++++++++... +.+.- ...+.+..++.||+.=--+.+++...+..++..
T Consensus 19 T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~ 96 (200)
T 2a5l_A 19 TAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDG 96 (200)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHH
Confidence 334555566777778999999999865 21110 113344557777776554557777777776653
No 128
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=33.37 E-value=63 Score=32.74 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHhhhhcCCCCcEEEEEcccccccchhHHHHHhhcccCCCEEEEEeCCC
Q 008493 31 TSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 88 (563)
Q Consensus 31 ~~l~~a~G~A~A~~~~~~~~~vv~~~GDG~~~~G~~~Eal~~a~~~~~pli~iv~nN~ 88 (563)
.++++|+|+|++- .+.++..-|.|-.. .++.|..++..+.|+++++-+..
T Consensus 75 ~a~~~a~Gaa~aG-----~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 75 ASIAAAIGASWAG-----AKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp HHHHHHHHHHHTT-----CCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--
T ss_pred HHHHHHHHHHHhC-----CcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCC
Confidence 3567777777763 35566666777654 35667777777899999987654
No 129
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=32.91 E-value=70 Score=28.81 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCceEEeecccccc---CcHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 441 CLAASALLESNGLRLTVADARFCKP---LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 441 ~~~Aa~~L~~~Gi~v~vi~~~~l~P---f~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
+...++.+++.|.+++++++..+.| .|.+...+.+..++.||+.=--+.+++...+..++-.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 3444566677798999999987765 3555666677778888877655567888888887754
No 130
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=31.65 E-value=29 Score=26.90 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=39.9
Q ss_pred cEEEEEechhHHHH------HHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc---cCCEEEEEeCCCCCChHHH
Q 008493 428 RVALLGYGTAVQSC------LAASALLESNGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 428 dv~iv~~G~~~~~~------~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~---~~~~vvvvE~~~~gg~g~~ 495 (563)
+++|.+.. ....| ..|.+.|++.|++...+|+..- |-..+.+.+... .+=+.|++++...||+-..
T Consensus 3 ~v~ly~~~-~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l 77 (93)
T 1t1v_A 3 GLRVYSTS-VTGSREIKSQQSEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF 77 (93)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred CEEEEEcC-CCCCchhhHHHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence 35555543 33445 7888889999999999999732 212233433332 1236777776667887543
No 131
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.30 E-value=49 Score=26.12 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=40.8
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhc-cCCEEEEEeCCCCCChHHH
Q 008493 428 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 428 dv~iv~~G----~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~-~~~~vvvvE~~~~gg~g~~ 495 (563)
.++|.+.| .....|..|...|++.|++...+++..- |--.+.+.+... .+=+.|+++....||+...
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 47777765 4457888898999888999999998642 211122333322 2224556654446887643
No 132
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=30.94 E-value=81 Score=27.17 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=35.1
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCCh
Q 008493 430 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGF 492 (563)
Q Consensus 430 ~iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~ 492 (563)
++|.|+|+. ..|...++.|++.|+++.++++... +.+.+.+.+..++.||+.=..+.|.+
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gspty~g~~ 66 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGTPPSQPSE 66 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEECCBSSCCH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEcCCcCCch
Confidence 345566655 3444455667778999999998743 33444444455676666544333333
No 133
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=30.68 E-value=60 Score=25.89 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=42.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHH---HHHHHh-ccCCEEEEEeCCCCCChHHH
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLA-KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~---~i~~~~-~~~~~vvvvE~~~~gg~g~~ 495 (563)
.++|.+. +....|..|...|++.|++...+++....|-+.+ .+.+.. ..+=+.|++.....||+...
T Consensus 20 ~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 20 TVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDT 90 (113)
T ss_dssp SEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHH
Confidence 4666654 4568899999999999999999999765432222 122221 12235566665456887644
No 134
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=30.56 E-value=88 Score=28.47 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=36.7
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEE
Q 008493 426 GERVALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 483 (563)
Q Consensus 426 g~dv~iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvv 483 (563)
++.+++|.+++.. .......+.|++.|+++.++++..- +.+.+.+.++..+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~---~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE---SLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS---CHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC---ChHHHHHHHHhCCEEEE
Confidence 5689999988763 2444455566777999999987752 33444555666676665
No 135
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=29.74 E-value=82 Score=26.00 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=32.9
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCC
Q 008493 431 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGG 491 (563)
Q Consensus 431 iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg 491 (563)
+|.|+|+. ..|...++.|++.|+++.++++....+ + .+..++.||+.=..+.+|
T Consensus 2 ~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~pty~~g 59 (138)
T 5nul_A 2 KIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGCSAMTDE 59 (138)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEECCBTTT
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEcCccCCC
Confidence 34455544 455555666777899999999875543 1 234567777765433344
No 136
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=29.46 E-value=46 Score=29.59 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=35.1
Q ss_pred HHHHHhCCCceEEeeccccccC-----------cHHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 445 SALLESNGLRLTVADARFCKPL-----------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 445 a~~L~~~Gi~v~vi~~~~l~Pf-----------~~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
++.|+ .|.+++++++..+..+ +.+.+.+.+..++.||+.=--+.+++...+..++-.
T Consensus 30 ~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 30 IGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 34444 5889999998874322 223444556667777776544456777777666644
No 137
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=28.70 E-value=1.1e+02 Score=24.88 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=38.5
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCCCCChHHH--HHHHHHH
Q 008493 430 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSH--VVQFLAQ 502 (563)
Q Consensus 430 ~iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~~gg~g~~--v~~~l~~ 502 (563)
++|.|+|.. ..+...++.|++.|++++++++.... .+ .+..++.||+.=..+.+|.... +..++..
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~---~~----~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN---VD----DVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC---HH----HHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC---HH----HHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 345566554 44444556666779999999986543 22 2345777777655444555444 5555543
No 138
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=28.63 E-value=1.1e+02 Score=31.57 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcH---HHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 426 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH---ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 426 g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~---~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
+-|++++++|.....+.-+.+.| +.|.+|=..+. +++. +.+.+..++.+.++.+-.+..-+.--++..+...
T Consensus 107 dIDaVviaTp~p~~H~e~a~~AL-~AGKHVv~~nk----~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eLv~~a~~ 181 (446)
T 3upl_A 107 LIDVIIDATGIPEVGAETGIAAI-RNGKHLVMMNV----EADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIEFVSA 181 (446)
T ss_dssp TCCEEEECSCCHHHHHHHHHHHH-HTTCEEEECCH----HHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCChHHHHHHHHHHH-HcCCcEEecCc----ccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHHHHHHHHh
Confidence 34899999986432222222223 35766544332 3333 3556666777777776654323344455555554
Q ss_pred cCCCCCCCceEEe--ecCCcccCCCCHHHH---HHHcCCCHHHHHHHHHHHhccccccccc
Q 008493 503 DGLLDGTVKWRPL--VLPDRYIDHGSPADQ---LAQAGLTPSHIAATVFNILGQTREALEI 558 (563)
Q Consensus 503 ~~~~~~~~~~~~~--~~~~~~~~~g~~~~l---l~~~gl~~~~I~~~i~~~~~~~~~~~~~ 558 (563)
-|+ ++... |..+.+....+++.. -+.-++++. -+.++++.+|-++|.
T Consensus 182 ~G~-----~~v~~Gkg~~~~~~~~~t~~~~~~~a~~~~~~~~----m~~sf~dgtk~~~Em 233 (446)
T 3upl_A 182 LGY-----EVVSAGKGKNNPLNFDATPDDYRQEADRRNMNVR----LLVEFIDGSKTMVEM 233 (446)
T ss_dssp TTC-----EEEEEEEEESSCCCTTCCHHHHHHHHHHTTCCHH----HHHHHHTSHHHHHHH
T ss_pred CCC-----eEEEeccCcCCcccCCCChhHHHHHHHHCCCChH----HhhhhccccHHHHHH
Confidence 443 34433 445555555677666 455688873 355566676666653
No 139
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=27.71 E-value=45 Score=30.12 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCceEEeec
Q 008493 427 ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 460 (563)
Q Consensus 427 ~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~ 460 (563)
.||+||+.|..- +.||-.|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 379999999764 3455667888999999984
No 140
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=26.73 E-value=4.2e+02 Score=26.21 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=43.2
Q ss_pred EEEEEech-hHHHHHHHHHHHHhCCCceEEeeccccccCcHH-----HHHHHhccC-CEEEEEeCCCCCCh
Q 008493 429 VALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHA-----LIRSLAKSH-EVLITVEEGSIGGF 492 (563)
Q Consensus 429 v~iv~~G~-~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~-----~i~~~~~~~-~~vvvvE~~~~gg~ 492 (563)
=+|+++|. ...+...|++.+++.|-++-++++.+-+|-+.+ +|..+-+.+ ...|-.-+|..|+.
T Consensus 137 PviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~ 207 (350)
T 3g8r_A 137 PVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPDL 207 (350)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSSC
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCCc
Confidence 36678885 458889999999888888888888888886554 444444445 34444455665543
No 141
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=25.97 E-value=1.9e+02 Score=33.58 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=47.8
Q ss_pred HHHHHHHHHhccCCCC---eEEEEeCCCCCCCCCCCC-----CChhhhhhhhcCCCcEEEecCCHHHHHHHHHHHHh---
Q 008493 318 RAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTH-----CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA--- 386 (563)
Q Consensus 318 ~a~dqi~~~a~~~~~p---v~~v~~~~G~~g~~G~tH-----~~~~d~~~~~~~p~~~v~~P~~~~e~~~~l~~a~~--- 386 (563)
..+|.+ |.++..++| +++++..-++ |..+++. ....+.+-.-.+|.+. +.=.|+.++...++.|++
T Consensus 539 ~~~Eal-n~A~~~~lp~g~vi~iv~NN~~-gist~~~~~~s~~~~~~~a~a~G~p~~~-VdG~D~~av~~a~~~A~~~~r 615 (1113)
T 2xt6_A 539 VVAETL-NLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFH-VNGDDPEACAWVARLAVDFRQ 615 (1113)
T ss_dssp HHHHHH-TTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEE-EETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhcCCCCCCeEEEEEeCCc-ccccCccccccccCHHHHHHhcCCcEEE-EcCCCHHHHHHHHHHHHHHHH
Confidence 556666 889999998 8888865443 2222221 1122333333455443 356699999999998875
Q ss_pred cCCCCEEEEe
Q 008493 387 IDDRPSCFRY 396 (563)
Q Consensus 387 ~~~~P~~i~~ 396 (563)
..++|++|-.
T Consensus 616 ~~~~PvlIe~ 625 (1113)
T 2xt6_A 616 AFKKDVVIDM 625 (1113)
T ss_dssp HHCCCEEEEE
T ss_pred hcCCCEEEEE
Confidence 3478998865
No 142
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.78 E-value=1.5e+02 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=23.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCceEEeecc
Q 008493 428 RVALLGYGTAVQSCLAASALLESNGLRLTVADAR 461 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~ 461 (563)
.++|+++|.+... .++.|.+.|.++.+++..
T Consensus 9 ~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 9 HALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 5899999987763 445677789999998864
No 143
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=25.35 E-value=79 Score=28.36 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhCCCceEEeeccccccC-----------------cH-HHHHHHhccCCEEEEEeCCCCCChHHHHHH
Q 008493 437 AVQSCLAASALLESNGLRLTVADARFCKPL-----------------DH-ALIRSLAKSHEVLITVEEGSIGGFGSHVVQ 498 (563)
Q Consensus 437 ~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf-----------------~~-~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~ 498 (563)
.-..+...++.|++.|.+++++++....|. |. +.+.+.+..++.||+.=--+.+++...+..
T Consensus 20 T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~ 99 (211)
T 1ydg_A 20 GYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRA 99 (211)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTEECHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccCccHHHHH
Confidence 345555666778778999999999865211 10 112334455677776654445777777777
Q ss_pred HHHH
Q 008493 499 FLAQ 502 (563)
Q Consensus 499 ~l~~ 502 (563)
++..
T Consensus 100 ~ld~ 103 (211)
T 1ydg_A 100 FIDT 103 (211)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 144
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=25.08 E-value=1.1e+02 Score=27.64 Aligned_cols=63 Identities=6% Similarity=0.043 Sum_probs=37.4
Q ss_pred HHHHHHH-HHHHHhCCCceE-EeeccccccCc-----------HHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHH
Q 008493 438 VQSCLAA-SALLESNGLRLT-VADARFCKPLD-----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 501 (563)
Q Consensus 438 ~~~~~~A-a~~L~~~Gi~v~-vi~~~~l~Pf~-----------~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~ 501 (563)
...+.++ ++.+ ++|.+++ ++|+.-+-.++ .+.+.+.+..++.||+.=--+.+++...+..++-
T Consensus 22 t~~la~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD 97 (199)
T 4hs4_A 22 NAAVARALPEIA-PEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAID 97 (199)
T ss_dssp HHHHHHHHHHHC-CTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCccCCCcCHHHHHHHH
Confidence 3333333 3444 3688899 99987652222 2345555667787777765556777666666553
No 145
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=24.99 E-value=82 Score=25.92 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCC
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 479 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~ 479 (563)
.....|..|.+.|++.|+....+|+.. .|...+.+.+.++..+
T Consensus 13 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 13 PRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp TTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 345789999999999999999999875 5668888887776554
No 146
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=24.84 E-value=83 Score=29.04 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=48.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHh---CCCceEEeeccccccCcHHHHHHHhccCCEEEEEeCCC-CCCh---HHHHHHHH
Q 008493 428 RVALLGYGTAVQSCLAASALLES---NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGF---GSHVVQFL 500 (563)
Q Consensus 428 dv~iv~~G~~~~~~~~Aa~~L~~---~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~~-~gg~---g~~v~~~l 500 (563)
.-++|.|||+...+.+.|+.|.+ .|+++.|+++....+ + + +...+.+|++=..+ .|-+ ...+..+|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~---~---~-l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L 113 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRL---S---C-LEEERLLLVVTSTFGNGDCPGNGEKLKKSL 113 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCG---G---G-GGTCSEEEEEEECBTTTBCCGGGHHHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCH---h---H-hccCCeEEEEEeccCCCcCCHHHHHHHHHH
Confidence 34667899999888888877643 588899988875543 1 1 23456777665543 2322 23344555
Q ss_pred HHcCCCCCCCceEEeec
Q 008493 501 AQDGLLDGTVKWRPLVL 517 (563)
Q Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (563)
..........++..+|.
T Consensus 114 ~~~~~~l~~~~~aVfGl 130 (219)
T 3hr4_A 114 FMLKELNNKFRYAVFGL 130 (219)
T ss_dssp HHCCCCSSCCEEEEEEE
T ss_pred HhcchhhcCCEEEEEeC
Confidence 54321011345556664
No 147
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=24.56 E-value=1.1e+02 Score=24.93 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 477 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~ 477 (563)
.....|..|.+.|++.|+...++++.. .|.+.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~ 48 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSY 48 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhh
Confidence 346789999999999999999999864 46678888777653
No 148
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=24.29 E-value=79 Score=25.97 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
.....|..|.+.|++.|+....+|+.. .|...+.+.+.++..
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 345789999999999999999999874 566888888877654
No 149
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=23.56 E-value=2.5e+02 Score=24.19 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=37.7
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhCC-CceEEeeccccccCcHHHHHHHhccCCEEEEEeCC
Q 008493 428 RVALLGYGTAV----QSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 487 (563)
Q Consensus 428 dv~iv~~G~~~----~~~~~Aa~~L~~~G-i~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE~~ 487 (563)
+++|++.|... ..-..+++.|++.. -+++++|..+.-+--...+.+. +.+++|+||..
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEeC
Confidence 36899999875 34566777787642 2488999987754222223221 46888888864
No 150
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=23.21 E-value=1.6e+02 Score=26.17 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCceEEeeccccccCc----------HHHHHHHhccCCEEEEEeCCCCCChHHHHHHHHHH
Q 008493 440 SCLAASALLESNGLRLTVADARFCKPLD----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 440 ~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~----------~~~i~~~~~~~~~vvvvE~~~~gg~g~~v~~~l~~ 502 (563)
.+..+++.++ .|.+++++++..+-.++ .+.+.+.+..++.||+.=--+.+++...+..++-.
T Consensus 21 la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 21 LAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDW 92 (192)
T ss_dssp HHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHHH
Confidence 3444455565 68999999998642222 23455667778888887665567787777776643
No 151
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=23.20 E-value=2.2e+02 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHH-Hhcc-ccccccc
Q 008493 535 GLTPSHIAATVFN-ILGQ-TREALEI 558 (563)
Q Consensus 535 gl~~~~I~~~i~~-~~~~-~~~~~~~ 558 (563)
|++|.+|++...+ ++++ .|=|+||
T Consensus 121 G~~p~eiiA~tLR~~fgqG~KV~vEi 146 (201)
T 1vp8_A 121 GVSRTEAIAEALRSLFGHGLKVCVEI 146 (201)
T ss_dssp CCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 4667777766666 6654 4767665
No 152
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=22.68 E-value=2.3e+02 Score=23.78 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=40.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHH-HhccCCEEEEEeC
Q 008493 428 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRS-LAKSHEVLITVEE 486 (563)
Q Consensus 428 dv~iv~~G~-~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~-~~~~~~~vvvvE~ 486 (563)
++.|+..+. ....|.+..+.|++.|+.+++...++=.++-. .|++ ..++...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~-kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ-ALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHH-HHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHH-HHHHHHHcCCCEEEEEec
Confidence 566666664 45889999999999999999876532233333 3544 3567788888765
No 153
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=22.67 E-value=80 Score=25.97 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccC
Q 008493 436 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 478 (563)
Q Consensus 436 ~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~ 478 (563)
.....|..|.+.|++.|+...++|+.. .|...+.+.+.++..
T Consensus 12 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 53 (120)
T 3gkx_A 12 PACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPLS 53 (120)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHHc
Confidence 446789999999999999999999975 566888887776543
No 154
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.63 E-value=1e+02 Score=26.53 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=32.3
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhccCCEEEEEe
Q 008493 430 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVE 485 (563)
Q Consensus 430 ~iv~~G~~~----~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~~~~vvvvE 485 (563)
++|.|+|+. ..|...++.|++.|+++.++++.... +.+.+.+.+..++.||+-=
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~~~d~ii~Gs 64 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAV--DLQELRELVGRCTGLVIGM 64 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCC--CHHHHHHHHHTEEEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcC--CHHHHHHHHHhCCEEEEEc
Confidence 456666655 44445556677789999999987440 2343444444456666553
No 155
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=22.42 E-value=72 Score=27.47 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=34.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhCCCceEEeecccccc-CcHHHHHHH
Q 008493 425 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP-LDHALIRSL 474 (563)
Q Consensus 425 ~g~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~P-f~~~~i~~~ 474 (563)
..+++++|+-|+.+...+..++.|.+.+-++.++..++-.- +-.+.+.++
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~g~r~~~d~~~~~el~~l 72 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKA 72 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEEEECBGGGCCSHHHHHHH
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHH
Confidence 35689999999999888888888877777888774443322 223445544
No 156
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=21.10 E-value=1.6e+02 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHh-CCCceEEeecccc
Q 008493 439 QSCLAASALLES-NGLRLTVADARFC 463 (563)
Q Consensus 439 ~~~~~Aa~~L~~-~Gi~v~vi~~~~l 463 (563)
..+...++.|++ .|++++++++...
T Consensus 20 ~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 20 KMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred HHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 444555667777 8999999998754
No 157
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.00 E-value=3.7e+02 Score=29.00 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=53.3
Q ss_pred hhcCCCcEEEecCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCccCCCCCCC-C--ccc---cCceEEEeeCCcEEEEE
Q 008493 360 MACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKG-I--PLE---VGKGRILIEGERVALLG 433 (563)
Q Consensus 360 ~~~~p~~~v~~P~~~~e~~~~l~~a~~~~~~P~~i~~~~~~~~~~~~p~~~~~-~--~~~---~~k~~~l~~g~dv~iv~ 433 (563)
++.+|.. |+.|.+.+|+..+++.|- ...-|++.+-.-..+....++..... - .+. +.+...+.+...++.|-
T Consensus 202 ~~~~P~a-VV~P~s~eeV~~iv~~A~-~~~ipVvprGgGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVe 279 (658)
T 4bby_A 202 FERIPDI-VLWPTCHDDVVKIVNLAC-KYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVE 279 (658)
T ss_dssp CSCCCSE-EEECCSHHHHHHHHHHHH-HTTCEEEEESSCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEE
T ss_pred ccCCcCE-EEeeCCHHHHHHHHHHHH-HCCCeEEEECCCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEe
Confidence 3456655 899999999999999994 47889888754433222122211110 0 111 22222234455678888
Q ss_pred echhHHHHHHHHHHHHhCCCc
Q 008493 434 YGTAVQSCLAASALLESNGLR 454 (563)
Q Consensus 434 ~G~~~~~~~~Aa~~L~~~Gi~ 454 (563)
.|.....+.+++ ++.|..
T Consensus 280 aGv~~~~L~~~L---~~~Gl~ 297 (658)
T 4bby_A 280 AGITGQELERQL---KESGYC 297 (658)
T ss_dssp TTCBHHHHHHHH---HHHTEE
T ss_pred cCchHHHHHHHH---HHcCCc
Confidence 888888666654 445543
No 158
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=20.75 E-value=81 Score=26.19 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCceEEeeccccccCcHHHHHHHhcc------------CCEEEEEeCCCCCChHHHH
Q 008493 440 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS------------HEVLITVEEGSIGGFGSHV 496 (563)
Q Consensus 440 ~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~i~~~~~~------------~~~vvvvE~~~~gg~g~~v 496 (563)
.|..|...|+..||....+|+.. |.+...+..++ +-+.|++++...||+-...
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~----d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~~ 82 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA----NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFF 82 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT----CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHHH
Confidence 35788888999999999999973 33333333322 3467788876678886443
No 159
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=20.70 E-value=2.3e+02 Score=22.45 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=41.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCceEEeeccccccCcHHH----HHHHh-ccCCEEEEEeCCCCCChHHH
Q 008493 427 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL----IRSLA-KSHEVLITVEEGSIGGFGSH 495 (563)
Q Consensus 427 ~dv~iv~~G~~~~~~~~Aa~~L~~~Gi~v~vi~~~~l~Pf~~~~----i~~~~-~~~~~vvvvE~~~~gg~g~~ 495 (563)
..++|.+. +....|..|.+.|++.|++...+++.... +... +.+.. ..+=+.|++.....||+...
T Consensus 17 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 17 SRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp CSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 35676664 55678999999999999999999986431 2222 32222 22335666655447887543
No 160
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=20.56 E-value=2.2e+02 Score=24.81 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCC--CceEEeecccc--ccCc------------------------HHHHHHHhccCCEEEEEeCCCCC
Q 008493 439 QSCLAASALLESNG--LRLTVADARFC--KPLD------------------------HALIRSLAKSHEVLITVEEGSIG 490 (563)
Q Consensus 439 ~~~~~Aa~~L~~~G--i~v~vi~~~~l--~Pf~------------------------~~~i~~~~~~~~~vvvvE~~~~g 490 (563)
..+...++.|++.| .+++++++... .+++ .+.+.+.+..++.||+.=--+.+
T Consensus 20 ~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~ 99 (201)
T 1t5b_A 20 QLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNF 99 (201)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTT
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccC
Confidence 34445566777655 88999998753 2222 12234455667888877665568
Q ss_pred ChHHHHHHHHHH
Q 008493 491 GFGSHVVQFLAQ 502 (563)
Q Consensus 491 g~g~~v~~~l~~ 502 (563)
++...+..++-.
T Consensus 100 ~~p~~lK~~iD~ 111 (201)
T 1t5b_A 100 NIPTQLKNYFDL 111 (201)
T ss_dssp BCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 888888877754
No 161
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=20.39 E-value=1.6e+02 Score=27.08 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCceEEeeccccc--cC-------------------------------cH--HHHHHHhccCCEEEE
Q 008493 439 QSCLAASALLESNGLRLTVADARFCK--PL-------------------------------DH--ALIRSLAKSHEVLIT 483 (563)
Q Consensus 439 ~~~~~Aa~~L~~~Gi~v~vi~~~~l~--Pf-------------------------------~~--~~i~~~~~~~~~vvv 483 (563)
..+..+++.|++.|.+++++|+..+. |. +. ....+.+..++.||+
T Consensus 19 ~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~iv~ 98 (228)
T 3tem_A 19 SLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIF 98 (228)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEEEE
Confidence 44555667787789999999997542 31 11 123344566788887
Q ss_pred EeCCCCCChHHHHHHHHHH
Q 008493 484 VEEGSIGGFGSHVVQFLAQ 502 (563)
Q Consensus 484 vE~~~~gg~g~~v~~~l~~ 502 (563)
.=--+.+++...+..++-.
T Consensus 99 ~~P~y~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 99 QFPLYWFSVPAILKGWMDR 117 (228)
T ss_dssp EEECBTTBCCHHHHHHHHH
T ss_pred ECChhhcccCHHHHHHHHH
Confidence 7655567788777777743
No 162
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.22 E-value=5.1e+02 Score=25.94 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=46.7
Q ss_pred EEEEEechh-HHHHHHHHHHHHhCCC-ceEEeeccccccCcHH-----HHHHHhccC-CEEEEEeCCCCCC-hHHHHHHH
Q 008493 429 VALLGYGTA-VQSCLAASALLESNGL-RLTVADARFCKPLDHA-----LIRSLAKSH-EVLITVEEGSIGG-FGSHVVQF 499 (563)
Q Consensus 429 v~iv~~G~~-~~~~~~Aa~~L~~~Gi-~v~vi~~~~l~Pf~~~-----~i~~~~~~~-~~vvvvE~~~~gg-~g~~v~~~ 499 (563)
=+|+++|.. ..+...|++.+++.|. ++-++.+.+-+|-+.+ +|..+-+.+ ...|..-+|. .| ..-.+++.
T Consensus 160 PViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt-~G~~~~~~AAv 238 (385)
T 1vli_A 160 PMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHS-EHPTEAPCAAV 238 (385)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECC-SSSSHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCC-CCchHHHHHHH
Confidence 367788864 6888999999998886 8888888888876544 444444445 3344444454 45 65555554
Q ss_pred H
Q 008493 500 L 500 (563)
Q Consensus 500 l 500 (563)
.
T Consensus 239 A 239 (385)
T 1vli_A 239 R 239 (385)
T ss_dssp H
T ss_pred H
Confidence 3
Done!