Query 008495
Match_columns 563
No_of_seqs 244 out of 3003
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 12:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 2.9E-55 6.3E-60 388.9 -7.8 529 1-534 1-541 (565)
2 PLN00113 leucine-rich repeat r 100.0 9.7E-47 2.1E-51 412.9 35.4 499 9-558 69-584 (968)
3 PLN00113 leucine-rich repeat r 100.0 7.8E-45 1.7E-49 397.9 34.8 477 44-559 68-561 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 1.3E-41 2.8E-46 302.3 -10.6 477 68-560 45-543 (565)
5 KOG0618 Serine/threonine phosp 100.0 1.6E-38 3.5E-43 311.1 -3.3 481 13-558 2-489 (1081)
6 KOG4194 Membrane glycoprotein 100.0 2.1E-36 4.7E-41 281.5 8.6 391 47-517 54-464 (873)
7 KOG4194 Membrane glycoprotein 100.0 1.6E-36 3.5E-41 282.3 7.1 384 8-460 51-448 (873)
8 KOG0618 Serine/threonine phosp 100.0 1.9E-35 4.1E-40 289.7 -2.2 464 11-555 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.8E-34 1.3E-38 267.6 -1.9 366 92-538 8-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.2E-32 7E-37 256.0 0.2 360 9-440 7-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.8E-23 1.7E-27 224.4 27.2 173 358-536 726-909 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3E-22 6.4E-27 219.9 27.9 337 86-509 553-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.2E-24 4.7E-29 192.6 -0.6 284 12-310 49-358 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 8.7E-22 1.9E-26 200.3 16.6 257 11-312 203-459 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 6E-21 1.3E-25 194.2 17.8 156 70-246 203-358 (788)
16 KOG4237 Extracellular matrix p 99.8 4.3E-22 9.4E-27 178.0 0.8 292 118-461 50-356 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.7E-20 1E-24 189.1 12.9 245 47-311 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.7E-20 1.4E-24 188.0 13.7 246 10-289 179-429 (754)
19 KOG0617 Ras suppressor protein 99.7 2.4E-19 5.2E-24 141.9 -3.4 166 38-204 26-193 (264)
20 KOG0617 Ras suppressor protein 99.7 6.4E-19 1.4E-23 139.5 -3.6 159 7-178 31-191 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-16 3.7E-21 152.1 8.5 223 44-266 22-291 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 4.5E-16 9.7E-21 149.2 7.4 253 3-264 17-318 (319)
23 KOG0532 Leucine-rich repeat (L 99.4 3.1E-15 6.8E-20 140.8 -3.7 209 2-224 43-251 (722)
24 KOG1909 Ran GTPase-activating 99.4 5.2E-14 1.1E-18 125.0 1.2 130 137-266 157-311 (382)
25 KOG1909 Ran GTPase-activating 99.3 1.7E-13 3.7E-18 121.8 0.5 234 44-287 29-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.3E-18 129.6 -0.3 191 12-218 78-271 (722)
27 KOG3207 Beta-tubulin folding c 99.3 1.9E-13 4.2E-18 124.9 -0.4 185 377-561 118-317 (505)
28 KOG3207 Beta-tubulin folding c 99.3 4E-13 8.7E-18 122.9 1.4 203 65-267 118-340 (505)
29 COG4886 Leucine-rich repeat (L 99.3 3.1E-12 6.8E-17 126.0 7.8 193 72-266 97-290 (394)
30 KOG1259 Nischarin, modulator o 99.3 7.7E-13 1.7E-17 115.1 2.8 226 87-314 178-415 (490)
31 PF14580 LRR_9: Leucine-rich r 99.3 2.9E-12 6.2E-17 107.1 5.5 123 43-167 17-147 (175)
32 KOG1259 Nischarin, modulator o 99.3 1.1E-12 2.3E-17 114.2 2.7 131 134-267 281-413 (490)
33 COG4886 Leucine-rich repeat (L 99.3 9E-12 2E-16 122.8 8.8 175 113-288 115-290 (394)
34 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-12 5.7E-17 107.4 2.6 104 404-511 20-126 (175)
35 KOG4658 Apoptotic ATPase [Sign 99.1 1.9E-10 4.1E-15 121.0 6.8 123 46-169 524-651 (889)
36 KOG0531 Protein phosphatase 1, 99.0 3.9E-11 8.4E-16 118.2 -0.3 241 67-312 71-319 (414)
37 KOG4658 Apoptotic ATPase [Sign 99.0 6.8E-10 1.5E-14 116.8 7.3 105 44-148 544-653 (889)
38 KOG0531 Protein phosphatase 1, 99.0 7.7E-11 1.7E-15 116.1 -0.3 195 358-560 73-270 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 4E-09 8.6E-14 72.4 3.5 59 428-486 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 8E-14 72.5 2.5 61 403-463 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.7 9.9E-10 2.2E-14 95.9 -2.6 173 69-241 186-374 (419)
42 PLN03150 hypothetical protein; 98.6 7.6E-08 1.7E-12 99.4 8.3 103 429-531 420-525 (623)
43 KOG4341 F-box protein containi 98.6 1.2E-09 2.6E-14 99.9 -4.9 154 379-532 267-437 (483)
44 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.4E-14 107.0 -6.4 175 42-220 106-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.7E-09 5.9E-14 93.3 -4.6 174 357-531 185-373 (419)
46 PLN03150 hypothetical protein; 98.5 3.9E-07 8.5E-12 94.2 8.5 105 452-556 419-526 (623)
47 KOG4579 Leucine-rich repeat (L 98.4 6.6E-09 1.4E-13 80.0 -4.1 129 428-557 28-158 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.4 4.5E-07 9.8E-12 78.6 6.3 111 63-173 87-227 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-07 2.5E-12 82.2 1.8 185 63-266 25-255 (388)
50 KOG2982 Uncharacterized conser 98.4 2.4E-07 5.1E-12 81.4 3.3 61 206-266 198-262 (418)
51 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.6E-13 100.0 -5.2 126 46-173 165-292 (1096)
52 KOG2982 Uncharacterized conser 98.4 1.4E-07 3.1E-12 82.8 1.8 61 229-289 198-263 (418)
53 PRK15386 type III secretion pr 98.4 3.6E-06 7.8E-11 79.7 10.9 131 379-531 51-187 (426)
54 KOG4579 Leucine-rich repeat (L 98.3 6.9E-08 1.5E-12 74.5 -0.5 111 45-155 27-141 (177)
55 PF12799 LRR_4: Leucine Rich r 98.3 6.8E-07 1.5E-11 55.7 3.2 39 499-537 2-40 (44)
56 KOG4341 F-box protein containi 98.3 8.5E-08 1.8E-12 88.2 -1.7 291 4-304 132-458 (483)
57 PF12799 LRR_4: Leucine Rich r 98.2 2.2E-06 4.8E-11 53.4 4.4 38 46-83 2-39 (44)
58 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.8E-11 70.7 6.1 123 406-531 22-150 (233)
59 PF13306 LRR_5: Leucine rich r 98.2 3.8E-06 8.2E-11 68.2 6.7 120 422-547 7-128 (129)
60 KOG3665 ZYG-1-like serine/thre 98.2 2E-06 4.4E-11 88.6 6.1 80 44-124 147-230 (699)
61 KOG1644 U2-associated snRNP A' 98.2 2.8E-06 6E-11 70.6 5.6 126 383-510 22-152 (233)
62 PRK15386 type III secretion pr 98.2 1E-05 2.2E-10 76.8 9.2 136 399-556 48-188 (426)
63 PF13306 LRR_5: Leucine rich r 98.1 1.1E-05 2.3E-10 65.5 6.9 121 398-524 7-129 (129)
64 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.4E-11 90.6 0.7 130 403-534 122-263 (699)
65 KOG2123 Uncharacterized conser 97.4 9.5E-06 2.1E-10 70.9 -3.3 79 67-147 18-98 (388)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00011 2.5E-09 64.1 1.0 90 60-150 35-129 (260)
67 KOG1947 Leucine rich repeat pr 97.2 8.7E-05 1.9E-09 75.7 0.3 124 44-167 187-328 (482)
68 KOG2123 Uncharacterized conser 97.2 1.3E-05 2.9E-10 70.0 -4.8 98 450-551 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 97.1 0.00031 6.8E-09 61.4 3.0 84 402-487 42-128 (260)
70 KOG1947 Leucine rich repeat pr 97.1 0.0002 4.3E-09 73.1 1.5 232 4-265 183-439 (482)
71 KOG0473 Leucine-rich repeat pr 96.1 0.00013 2.9E-09 62.2 -6.2 83 44-126 41-123 (326)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0038 8.3E-08 32.1 1.1 16 500-515 2-17 (22)
73 KOG4308 LRR-containing protein 95.8 0.00018 3.9E-09 71.2 -7.8 174 47-220 89-303 (478)
74 PF13504 LRR_7: Leucine rich r 95.7 0.0055 1.2E-07 29.1 0.9 11 523-533 3-13 (17)
75 PF00560 LRR_1: Leucine Rich R 95.3 0.0088 1.9E-07 30.7 1.0 15 47-61 2-16 (22)
76 KOG4308 LRR-containing protein 95.2 0.00021 4.6E-09 70.7 -9.6 174 70-243 89-303 (478)
77 PF13504 LRR_7: Leucine rich r 95.1 0.015 3.2E-07 27.6 1.4 16 499-514 2-17 (17)
78 smart00370 LRR Leucine-rich re 94.7 0.025 5.5E-07 30.4 1.9 23 520-542 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 94.7 0.025 5.5E-07 30.4 1.9 23 520-542 1-23 (26)
80 KOG0473 Leucine-rich repeat pr 94.4 0.00098 2.1E-08 57.1 -6.1 87 63-149 37-123 (326)
81 KOG3864 Uncharacterized conser 93.6 0.0066 1.4E-07 51.1 -2.8 83 403-485 101-186 (221)
82 KOG3864 Uncharacterized conser 93.2 0.01 2.3E-07 50.0 -2.2 78 453-530 103-185 (221)
83 smart00370 LRR Leucine-rich re 89.2 0.33 7.2E-06 26.0 1.8 19 427-445 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 89.2 0.33 7.2E-06 26.0 1.8 19 427-445 2-20 (26)
85 smart00364 LRR_BAC Leucine-ric 86.2 0.56 1.2E-05 25.0 1.5 18 521-538 2-19 (26)
86 PF13516 LRR_6: Leucine Rich r 83.0 0.57 1.2E-05 24.4 0.7 17 160-176 2-18 (24)
87 smart00365 LRR_SD22 Leucine-ri 82.5 1.3 2.8E-05 23.8 1.9 16 521-536 2-17 (26)
88 smart00368 LRR_RI Leucine rich 79.7 0.97 2.1E-05 24.7 0.9 16 545-560 2-17 (28)
89 smart00367 LRR_CC Leucine-rich 76.5 1.9 4.2E-05 23.0 1.5 12 520-531 1-12 (26)
90 KOG3763 mRNA export factor TAP 62.3 4.5 9.7E-05 40.3 1.6 63 472-534 215-283 (585)
91 KOG4242 Predicted myosin-I-bin 58.7 36 0.00078 33.6 6.8 58 209-266 415-481 (553)
92 KOG3763 mRNA export factor TAP 50.9 11 0.00024 37.7 2.2 64 447-511 214-283 (585)
93 PF01462 LRRNT: Leucine rich r 46.1 10 0.00022 20.7 0.7 18 11-28 10-27 (28)
94 KOG4242 Predicted myosin-I-bin 31.1 1.6E+02 0.0034 29.5 6.4 58 381-438 414-479 (553)
95 PRK09718 hypothetical protein; 28.8 94 0.002 31.0 4.6 14 498-511 228-241 (512)
96 smart00013 LRRNT Leucine rich 25.2 36 0.00078 19.3 0.8 20 11-30 10-29 (33)
97 TIGR00864 PCC polycystin catio 21.0 61 0.0013 39.9 2.1 30 504-533 1-31 (2740)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-55 Score=388.93 Aligned_cols=529 Identities=45% Similarity=0.672 Sum_probs=423.8
Q ss_pred ChHHHHHhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCC
Q 008495 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (563)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~ 80 (563)
+|++++.+|+-..+++|++.+.++|..+.+.....+++++||+...+.++++++|.++.+...+.++..|.+|++.++.+
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 47899999999999999999999999999999899999999999999999999999999988999999999999999999
Q ss_pred CCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCC
Q 008495 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (563)
Q Consensus 81 ~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~ 160 (563)
..+|++++.+..++.++.+.|++..+|..++++.++++++++.+.+.++++.++.+..++.++..+|++..+|.++..+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCC
Q 008495 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (563)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (563)
+|..+++.+|++...++..+. ++.|++++...|.++.+|+.++.+.+|..|++..|++..+| .|.+|..|++++++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999999888555 99999999999999999999999999999999999999998 7889999999999999
Q ss_pred CCccCchhhc-CCCCCcEEEccCCcccccccccccee-eeEEEcCCCCCCCCCccccCCCCCcEEEcCCCcccccccccc
Q 008495 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (563)
Q Consensus 241 ~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 318 (563)
.+..+|+... .++.+..||+.+|+++..|...+..+ |++||+++|.++.+|+.++++ +|+.+.+.||++.++.....
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999988655 89999999999999999999999888 999999999999999999999 99999999999999999999
Q ss_pred CCCChHHHHHhhccCCCCCCCccccch------hhHHHhhhccccccceeecCCCCCCcCChhhhccCC---ccEEECCC
Q 008495 319 NGPTPALLKYLRSRLPENEDSEASTTK------EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (563)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~ 389 (563)
.++.-..+++++..+............ ............+.+.+++++..++.+|...+.... ...++++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 999999999999865554332211111 111111122224455666666666666666555433 56666666
Q ss_pred CCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCC
Q 008495 390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (563)
Q Consensus 390 ~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 469 (563)
|++.++|..+..+..+...-+..++..++.+..++.+++|+-|++++|.+.++|.+ +..+..|+.+|++.|.+... |.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~ 475 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PE 475 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hH
Confidence 66666666555555544433334444455555566666666666666666666655 44444566666666655432 33
Q ss_pred CCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCC
Q 008495 470 PFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 470 ~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~ 534 (563)
++.....++.+..++|++.+++.+ +.++..|.+||+.+|.+..+|..++++++|+.|.++||++.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 344445555555555566655444 55566666666666666666666666666666666666555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.7e-47 Score=412.89 Aligned_cols=499 Identities=29% Similarity=0.365 Sum_probs=413.1
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCcc-chhHh-hcCCCCCcEEEcCCCCCCC-cch
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLSE-LPA 85 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~l~~~-~~~~~~L~~L~l~~~~~~~-l~~ 85 (563)
..++.||++++++.......+.. +++|+.|++++|.+. .+|.. +..+++|++|++++|.+.. +|.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence 46888999999887444444433 788999999999987 77765 4599999999999998873 443
Q ss_pred hhhcCCCccEEEcCCCcCC-CCCchhcccCCccEEEccCCCCC-CCcccccccCCCCeEecCCCccc-cCccccccCCCc
Q 008495 86 AIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM 162 (563)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L 162 (563)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 46889999999999887 67888999999999999999886 67888999999999999999887 577889999999
Q ss_pred cEEEecCCcccccchhhhccccccceEEcCCCcCC-CCcccccCCCcccEEeccCCccc-ccCCCcccccccceEEcCCC
Q 008495 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240 (563)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~ 240 (563)
++|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 99999999988665666899999999999999885 57888999999999999999887 57778889999999999999
Q ss_pred CCc-cCchhhcCCCCCcEEEccCCccccc-cccccc-eeeeEEEcCCCCCCC-CCccccCCCCCcEEEcCCCcccccccc
Q 008495 241 ALS-ALPAELGKLSKLGTLDLHSNQLKEY-CVEACQ-LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS 316 (563)
Q Consensus 241 ~~~-~l~~~l~~~~~L~~L~l~~~~l~~~-~~~~~~-~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 316 (563)
.+. .+|..+..+++|+.|++++|.+... +..... .+|+.|++++|.+.+ +|..++.+++|+.+++++|.+......
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 887 6788889999999999999988743 333333 349999999999886 777889999999999999987532110
Q ss_pred ccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCC-cCChhhhccCCccEEECCCCCCCc-
Q 008495 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE- 394 (563)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~- 394 (563)
.+ .....++.+++.++.+. .++..+..+++|+.+++++|.++.
T Consensus 375 ~~-----------------------------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 375 GL-----------------------------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred hH-----------------------------------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 00 11245678888888776 567778888999999999998874
Q ss_pred CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCC
Q 008495 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (563)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 474 (563)
+|..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.+....+. ....++|+.|++++|.++...+..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChhhhhh
Confidence 677788899999999999998887776677889999999999988764444 2345889999999999988877788889
Q ss_pred CCCCeEEcCCCccc-ccchhhhccCCccEEEcCCCcCC-chhhhccCCCCCCEEECCCCCCC-cCCCCcccCcccCcEEE
Q 008495 475 PHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALR 551 (563)
Q Consensus 475 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ 551 (563)
++|+.|++++|++. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..+ ++|+.++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ 577 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVN 577 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC-cccCEEe
Confidence 99999999999887 67788888999999999999988 46778889999999999999887 677666665 8899999
Q ss_pred cCCCCcc
Q 008495 552 LDGNPLR 558 (563)
Q Consensus 552 l~~~~~~ 558 (563)
+++|++.
T Consensus 578 ls~N~l~ 584 (968)
T PLN00113 578 ISHNHLH 584 (968)
T ss_pred ccCCcce
Confidence 9999875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-45 Score=397.88 Aligned_cols=477 Identities=29% Similarity=0.400 Sum_probs=408.8
Q ss_pred cccccEEEccCCCcc-chhHhhcCCCCCcEEEcCCCCCC-Ccchhh-hcCCCccEEEcCCCcCC-CCCchhcccCCccEE
Q 008495 44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF 119 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L 119 (563)
..+++.|+++++.+. .++..+..+++|+.|++++|.+. .+|..+ ..+++|++|++++|.+. .+|. ..+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999887 56778999999999999999987 677754 48999999999999887 4443 568999999
Q ss_pred EccCCCCC-CCcccccccCCCCeEecCCCccc-cCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCC
Q 008495 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (563)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~ 197 (563)
++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999997 67888999999999999999886 67888999999999999999988666666999999999999999986
Q ss_pred -CCcccccCCCcccEEeccCCccc-ccCCCcccccccceEEcCCCCCc-cCchhhcCCCCCcEEEccCCcccc-cccccc
Q 008495 198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEAC 273 (563)
Q Consensus 198 -~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~~ 273 (563)
.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.. ++....
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 68888999999999999999887 67888999999999999999887 678889999999999999999874 444333
Q ss_pred c-eeeeEEEcCCCCCCC-CCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHh
Q 008495 274 Q-LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (563)
Q Consensus 274 ~-~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (563)
. .+|+.|++++|.+.+ ++..++.+++|+.+++++|.+..... ..
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--------~~-------------------------- 351 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--------KN-------------------------- 351 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--------hH--------------------------
Confidence 3 349999999999887 77778999999999999998752110 00
Q ss_pred hhccccccceeecCCCCCC-cCChhhhccCCccEEECCCCCCCc-CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCC
Q 008495 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (563)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 429 (563)
......++.++++++.+. .++..+...++++.+++++|.+.. +|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 352 -l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 352 -LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred -HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 112357889999999886 577778888999999999999875 77788999999999999999988777778999999
Q ss_pred CEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc-ccchhhhccCCccEEEcCCC
Q 008495 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQN 508 (563)
Q Consensus 430 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~ 508 (563)
+.|++++|.+.+.....+..+++|+.|++++|.+....+..+ ..++|+.|++++|++. ..|..+..+++|+.|++++|
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 999999999998766667889999999999999876655444 4589999999999987 66778889999999999999
Q ss_pred cCC-chhhhccCCCCCCEEECCCCCCCc-CCCCcccCcccCcEEEcCCCCccc
Q 008495 509 SLQ-SIPEGFKNLTSLTELDLSDNNISA-LPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 509 ~l~-~l~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
.+. .+|+.+.++++|+.|++++|+++. +|..+..+ ++|+.|++++|+++.
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLSQLDLSQNQLSG 561 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCc-ccCCEEECCCCcccc
Confidence 998 678889999999999999999985 45444444 999999999999863
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-41 Score=302.34 Aligned_cols=477 Identities=29% Similarity=0.424 Sum_probs=385.1
Q ss_pred CCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCC
Q 008495 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (563)
Q Consensus 68 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (563)
.-|+.+.+++|.+..+...+.++..|.+|++++|.+..+|.+++.+..++.++++.+.+..+|..+....++..++++++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 56888999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcc
Q 008495 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227 (563)
Q Consensus 148 ~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 227 (563)
.+.+++++++.+..|..++..+|++...+.+ +..+..+..+++.+|.+.++|+....++.|+++|...|-++.+|..++
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 9999999999999999999999999998887 888899999999999999998877779999999999999999999999
Q ss_pred cccccceEEcCCCCCccCchhhcCCCCCcEEEccCCcccccccccc-c-eeeeEEEcCCCCCCCCCccccCCCCCcEEEc
Q 008495 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC-Q-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (563)
Q Consensus 228 ~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 305 (563)
.+.+|+-|+++.|++..+| .|..|+.|++++.+.|.+..++.... . .++..||+++|+++..|..+.-+++|.++|+
T Consensus 204 ~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 9999999999999999998 79999999999999999998877665 2 3499999999999999999999999999999
Q ss_pred CCCccccccccccCCCCh------HHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCC---C------CCC
Q 008495 306 TGNPLRTLRSSLVNGPTP------ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG---M------NLS 370 (563)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~------~~~ 370 (563)
++|.++.++......... ..++-++..+.... ..+....... .++.-.++. . ...
T Consensus 283 SNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~g-------T~~vLKyLrs---~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKG-------TQEVLKYLRS---KIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred cCCccccCCcccccceeeehhhcCCchHHHHHHHHccc-------HHHHHHHHHH---hhccCCCCCCcccccccCCCCC
Confidence 999998776432221000 00011111111100 0000000000 000000110 0 111
Q ss_pred cCChhhhccCCccEEECCCCCCCcCCccccCCCC---CcEEEcccCCCCCCChHHhhcCCC-CCEEEcCCCCCcccCCcc
Q 008495 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS---LQTLILSRNKIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDG 446 (563)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~---L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~L~~~~l~~~~~~~ 446 (563)
..........+.++|+++.-+++.+|+.+..... ++.+++++|++.+.+... ..+.. .+.+.+++|.+.-++. .
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L-~~lkelvT~l~lsnn~isfv~~-~ 430 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL-VELKELVTDLVLSNNKISFVPL-E 430 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh-HHHHHHHHHHHhhcCccccchH-H
Confidence 2223445556788899998888888876544443 788999999988877654 33333 3445566666555544 4
Q ss_pred cCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhh-ccCCCCCCE
Q 008495 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTE 525 (563)
Q Consensus 447 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~ 525 (563)
+..+++|+.|++++|-+.+. |..++.+..|++++++.|++..+|..+.....++.+-.++|.++.++.. +.++.+|..
T Consensus 431 l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 88999999999999877665 4567778889999999999999999998888999999999999998654 999999999
Q ss_pred EECCCCCCCcCCCCcccCcccCcEEEcCCCCcccc
Q 008495 526 LDLSDNNISALPPELGLLEPSLQALRLDGNPLRRY 560 (563)
Q Consensus 526 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 560 (563)
|++.+|.+..+|+.++.+ ++|++|+++||+|+..
T Consensus 510 LDL~nNdlq~IPp~Lgnm-tnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNM-TNLRHLELDGNPFRQP 543 (565)
T ss_pred eccCCCchhhCChhhccc-cceeEEEecCCccCCC
Confidence 999999999999999987 9999999999999853
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-38 Score=311.06 Aligned_cols=481 Identities=29% Similarity=0.339 Sum_probs=371.8
Q ss_pred eeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcchhhhcCC
Q 008495 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (563)
Q Consensus 13 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 91 (563)
++|.+.++++-||..++.. ..+..|++..|.+-..| +.+.+..+|+.|+++++++..+|..+..++
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 5788899999999988764 34888888888666544 355667779999999999999999999999
Q ss_pred CccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCC-
Q 008495 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (563)
Q Consensus 92 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~- 170 (563)
+|+.|+++.|.+..+|..+.++.+|+++++.+|.+..+|..+..+.+|+.|++++|.+..+|..+..++.+..+..++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999889999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccchhhhccccccceEEcCCCcCC-CCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhh
Q 008495 171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (563)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 249 (563)
++...+. .. ++.+++..+.+. .++..+..+.. .+++.+|.+. ...+..+.+|+.|....|.+..+.
T Consensus 149 ~~~~lg~-----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 149 KIQRLGQ-----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhcc-----cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEE---
Confidence 3322222 22 677777777664 34444444444 5999999887 245677889999998888887552
Q ss_pred cCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHh
Q 008495 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (563)
Q Consensus 250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (563)
-.-++++.|+.+.|.++.......+.++++++++.++++.+|.+++.+.+++.++...|.++.++...+..
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~--------- 286 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI--------- 286 (1081)
T ss_pred ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh---------
Confidence 23478999999999999777777788899999999999999999999999999999999987766554433
Q ss_pred hccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcccc-CCC-CCcE
Q 008495 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELS-SCA-SLQT 407 (563)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~-~~~-~L~~ 407 (563)
..++.+.+..|.+..++........|+.|++..|++..+|+.+. ... +|+.
T Consensus 287 ---------------------------~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 287 ---------------------------TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred ---------------------------hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 24455666667777777777777888888888888877765432 222 3566
Q ss_pred EEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcc
Q 008495 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487 (563)
Q Consensus 408 L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l 487 (563)
++.+.+++...+...=..++.|+.|++.+|.+++-.-..+.++++|+.|+|++|.+..+....+.+++.|++|++++|++
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 66666666654432223456788888888888774334477888888888888888877777778888888888888888
Q ss_pred cccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCC--cCCCCcccCcccCcEEEcCCCCcc
Q 008495 488 REAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 488 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
+.+|+.+..++.|++|...+|.+..+| -+..++.|+.+|++.|+++ .+|..... ++|+.||++||.-.
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCccc
Confidence 888888888888888888888888888 4677788888888888776 34433322 78888888888643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=281.47 Aligned_cols=391 Identities=25% Similarity=0.329 Sum_probs=273.8
Q ss_pred ccEEEccCCCccchh-HhhcCC--CCCcEEEcCCCCCCCc-chhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEcc
Q 008495 47 LQKLILAHNNIEKLK-EDLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (563)
Q Consensus 47 l~~L~l~~~~i~~l~-~~~~~~--~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 122 (563)
-+-|+.++..+..+. ..+..+ ..-+.|++++|.+..+ +..|.++++|+.+++.+|.++.+|.......+|+.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 355777777777552 123322 2345699999988866 457788999999999999998888776677779999999
Q ss_pred CCCCCCCc-ccccccCCCCeEecCCCccccCcc-ccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCc
Q 008495 123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (563)
Q Consensus 123 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 200 (563)
+|.++++. +.+..++.|+.|+++.|.+..++. .|..-.++++|++++|.|+.+....|..+.+|..|.++.|.++.+|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 99888774 567788899999999998888864 4777788999999999999998888888889999999999998887
Q ss_pred c-cccCCCcccEEeccCCccccc-CCCcccccccceEEcCCCCCccCch-hhcCCCCCcEEEccCCccccccccccceee
Q 008495 201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (563)
Q Consensus 201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L 277 (563)
. .|..+++|+.|++..|++..+ ...|.++++|+.|.+..|++..+.+ .|..+.++++|++..|++..+.
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-------- 285 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-------- 285 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh--------
Confidence 5 455588888888888888755 4567777777777777777776543 4556666666666666554321
Q ss_pred eEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhcccc
Q 008495 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357 (563)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (563)
..++.+++.|+.|+++.|.++.+...
T Consensus 286 -------------~g~lfgLt~L~~L~lS~NaI~rih~d----------------------------------------- 311 (873)
T KOG4194|consen 286 -------------EGWLFGLTSLEQLDLSYNAIQRIHID----------------------------------------- 311 (873)
T ss_pred -------------cccccccchhhhhccchhhhheeecc-----------------------------------------
Confidence 12456677777777777766433211
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
....+++|++|+++.|.++.+++ .+..+..|+.|+++.|.+..+-..+|.++.+|++|+|+.
T Consensus 312 -----------------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 312 -----------------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred -----------------hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 12234566667777666666543 355666677777777777666666677777777777777
Q ss_pred CCCcc---cCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEc------C
Q 008495 437 NPLRQ---VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDL------S 506 (563)
Q Consensus 437 ~~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l------~ 506 (563)
|.+.- .....|..+++|++|++.+|++..+...+|.++++|++|++.+|.+.++ ++.|..+ .|++|.+ +
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 76653 2334466677777777777777766666777777777777777766644 3344454 6666654 3
Q ss_pred CCcCCchhhhc
Q 008495 507 QNSLQSIPEGF 517 (563)
Q Consensus 507 ~~~l~~l~~~l 517 (563)
+|.+..++.++
T Consensus 454 DCql~Wl~qWl 464 (873)
T KOG4194|consen 454 DCQLKWLAQWL 464 (873)
T ss_pred eccHHHHHHHH
Confidence 45555555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=282.30 Aligned_cols=384 Identities=25% Similarity=0.346 Sum_probs=315.0
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCcchh
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAA 86 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~ 86 (563)
-+....+||+++++..+.....+.+. ....+.|++++|.+..+ +..|.++++|+++++.+|.++.||..
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f 120 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF 120 (873)
T ss_pred CCCceeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc
Confidence 35567899999999876444333322 35678899999999976 46789999999999999999999876
Q ss_pred hhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccccCcc-ccccCCCcc
Q 008495 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMS 163 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~ 163 (563)
.....+|+.|+|.+|.|+.+ ...+..++.|+.||++.|.+++++ ..|..-.++++|++.+|.|+.+.. .|..+.+|.
T Consensus 121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 66677899999999999976 456788999999999999999887 467777899999999999997754 488999999
Q ss_pred EEEecCCcccccchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCcccccC-CCcccccccceEEcCCCC
Q 008495 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (563)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 241 (563)
.|.+++|.++.++...|++++.|+.|++..|++..+ -..|..+++|+.|.+..|.+..+. ..|..+.++++|+++.|+
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 999999999999999999999999999999999766 346889999999999999999764 467889999999999999
Q ss_pred CccCc-hhhcCCCCCcEEEccCCcccc--ccccccceeeeEEEcCCCCCCCCCcc-ccCCCCCcEEEcCCCccccccccc
Q 008495 242 LSALP-AELGKLSKLGTLDLHSNQLKE--YCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSL 317 (563)
Q Consensus 242 ~~~l~-~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 317 (563)
+..+. .++-+++.|+.|+++.|.|.. ...+.+..+|++|+++.|+++.++++ |..+..|++|.++.|.++.+...
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~- 359 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG- 359 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh-
Confidence 99664 478899999999999998874 44455666788888888888886553 67777888888888877544322
Q ss_pred cCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCc---
Q 008495 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--- 394 (563)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--- 394 (563)
.+...++|++|++++|.+..
T Consensus 360 ---------------------------------------------------------af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 360 ---------------------------------------------------------AFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred ---------------------------------------------------------HHHHhhhhhhhcCcCCeEEEEEe
Confidence 23345678888888887553
Q ss_pred -CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCC
Q 008495 395 -LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (563)
Q Consensus 395 -l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (563)
-...+..+++|++|++.||++..++..+|.++++|++|+|.+|.+.++...+|..+ .|+.|.+..
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 33346778888888888888888888888888888888888888888888888888 888887764
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=289.65 Aligned_cols=464 Identities=27% Similarity=0.346 Sum_probs=351.8
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcC
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 90 (563)
+++|+++.+.+-.-|-+.... +.+|+.|+++.+.+..+|..+..+++|+.|+++.|.+..+|.+..++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 788888888888777665554 45699999999999999989999999999999999999998888999
Q ss_pred CCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCC-cccc------------------
Q 008495 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITS------------------ 151 (563)
Q Consensus 91 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~------------------ 151 (563)
.+|+++.|.+|.+..+|..+..+++|+.|+++.|.+..+|..+..++.++.+..++| .+..
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 999999999999999999999999999999999999888887777777777777776 1111
Q ss_pred -CccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCccccc
Q 008495 152 -LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (563)
Q Consensus 152 -i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (563)
+..++..+++ .|++.+|.+.... +..+..|+.+....|++..+. -..++|+.|+.+.|.+.... ......
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~-~~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLD-VHPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeec-cccccc
Confidence 1122222333 3666666665221 556666777766666665442 13467777888877776332 222356
Q ss_pred ccceEEcCCCCCccCchhhcCCCCCcEEEccCCcccccccccccee-eeEEEcCCCCCCCCCccccCCCCCcEEEcCCCc
Q 008495 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (563)
Q Consensus 231 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 309 (563)
+|+.++++.+.+..+|+|+..+.+|+.++...|.++.++....... |+.+++..|.+..+|...+..++|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 7899999999999999999999999999999999988877766655 999999999999999888889999999999998
Q ss_pred cccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCC
Q 008495 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (563)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (563)
+...+...+... ...+..++.+.
T Consensus 322 L~~lp~~~l~v~---------------------------------------------------------~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 322 LPSLPDNFLAVL---------------------------------------------------------NASLNTLNVSS 344 (1081)
T ss_pred ccccchHHHhhh---------------------------------------------------------hHHHHHHhhhh
Confidence 865543211110 11234445555
Q ss_pred CCCCcCCcc-ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCC
Q 008495 390 NSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468 (563)
Q Consensus 390 ~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 468 (563)
+.+...|.. =...+.|+.|++.+|.+++.....+.++++|+.|+|++|++..+++..+.+++.|+.|+|++|.++.+.
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp- 423 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP- 423 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-
Confidence 555555422 124567889999999999988788899999999999999999999888999999999999999988765
Q ss_pred CCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCc--hhhhccCCCCCCEEECCCCCCCcCCCCcccCccc
Q 008495 469 PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 546 (563)
Q Consensus 469 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 546 (563)
.....++.|++|...+|++...| .+..++.|+.+|++.|+++. +|+.... ++|++|+++||.=......-+..+++
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhh
Confidence 56788999999999999999998 78889999999999999884 4655443 89999999999522222111222255
Q ss_pred CcEEEcCCC
Q 008495 547 LQALRLDGN 555 (563)
Q Consensus 547 L~~L~l~~~ 555 (563)
+..+++.-+
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 555555544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.8e-34 Score=267.61 Aligned_cols=366 Identities=26% Similarity=0.374 Sum_probs=238.2
Q ss_pred CccEEEcCCCcCC--CCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 92 MLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 92 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
-.+-+|+++|.++ .+|.+...+++++.|.+..+++..+|+.+..+.+|++|.+.+|.+..+...++.++.|+.+.+..
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 3344455555444 34555555555555555555555555555555555555555555444444444455555554444
Q ss_pred Cccc--ccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCc-ccccccceEEcCCCCCccCc
Q 008495 170 NKLT--VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP 246 (563)
Q Consensus 170 ~~i~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~ 246 (563)
|++. .++.+ +..+..|+.|+++.|++..+|..+..-+++-.|++++|.|..+|..+ .+++.|-.|++++|.+..+|
T Consensus 88 N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 88 NNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred cccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 4333 22222 44444444444444444444444444444444444444444444332 23444444444444444444
Q ss_pred hhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHH
Q 008495 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326 (563)
Q Consensus 247 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 326 (563)
+.+..+.+|++|++++|.+..+ -..-+..+++|+.|.+++.+-
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hf---------------------QLrQLPsmtsL~vLhms~TqR---------------- 209 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHF---------------------QLRQLPSMTSLSVLHMSNTQR---------------- 209 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHH---------------------HHhcCccchhhhhhhcccccc----------------
Confidence 4444444444444444433211 001123344444554444321
Q ss_pred HHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCc
Q 008495 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~ 406 (563)
....+|..+..+.+|..+++++|++..+|+++..+++|+
T Consensus 210 -----------------------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 210 -----------------------------------------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred -----------------------------------------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 123577778888999999999999999999999999999
Q ss_pred EEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCC-CCCCCCCCCCCCeEEcCCC
Q 008495 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQELYLRRM 485 (563)
Q Consensus 407 ~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~~ 485 (563)
.|++++|++++..... +...+|++|+++.|+++.+|.. +.++++|+.|.+.+|.++-. .++.++++.+|+.+...+|
T Consensus 249 rLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTE-GEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eeccCcCceeeeeccH-HHHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 9999999999866543 6678999999999999998865 88999999999999988744 4677899999999999999
Q ss_pred cccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCC
Q 008495 486 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538 (563)
Q Consensus 486 ~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~ 538 (563)
.+.-.|++++.|..|+.|.++.|.+.++|++++-++.|+.|++..|+--.+|+
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999999999999999999999999999999999999999996444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.2e-32 Score=255.96 Aligned_cols=360 Identities=29% Similarity=0.428 Sum_probs=249.2
Q ss_pred hhcceeeCCCCccc--ccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchh
Q 008495 9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~ 86 (563)
..++-+|++++.+. .+|.++-+ +++++-|.|...++.++|+-++.+.+|+.|.+++|++.++-..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence 34566677777665 66766643 6677777777777777777777777777777777777766666
Q ss_pred hhcCCCccEEEcCCCcCC--CCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccc-cccCCCcc
Q 008495 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS 163 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~ 163 (563)
++.++.|+.+.++.|++. .+|..+..+..|..|+++.|++.+.|..+.+-+++-.|++++|+|..||.. +.+++-|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 677777777777777665 667777777777777777777777777777777777777777777777654 66677777
Q ss_pred EEEecCCcccccchhhhccccccceEEcCCCcCCCCc-ccccCCCcccEEeccCCccc--ccCCCcccccccceEEcCCC
Q 008495 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN 240 (563)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~ 240 (563)
.||++.|++..+++. ...+..|++|.+++|.+..+. ..+..+.+|+.|.+++++-+ .+|..+..+.+|..++++.|
T Consensus 154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 777777777777666 667777777777777664321 12334566777777776433 66777777777777777777
Q ss_pred CCccCchhhcCCCCCcEEEccCCcccccccccccee-eeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccC
Q 008495 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (563)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (563)
.+..+|+.+..+.+|+.|++++|.++.+......-. +++|.++.|+++.+|..+..+++|++|...+|.++
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------- 304 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------- 304 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence 777777777777777777777777776655544433 77777777777777777777777777776666542
Q ss_pred CCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccc
Q 008495 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399 (563)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l 399 (563)
+..+|+.++.+.+|+.+...+|.+.-+|+.+
T Consensus 305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 2345666666666666666666666666666
Q ss_pred cCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCc
Q 008495 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (563)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~ 440 (563)
..|.+|+.|.++.|.+...+.. +.-++.|+.|++..|+-.
T Consensus 336 cRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCc
Confidence 6666777777766666665543 356666666776666533
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.8e-23 Score=224.41 Aligned_cols=173 Identities=23% Similarity=0.279 Sum_probs=118.9
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCC-------c-cccCCCCCcEEEcccCCCCCCChHHhhcCCCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-------P-ELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-------~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 429 (563)
+++++++.++.+..+|..+ .+++|++|.+.++....+. + ....+++|+.|++++|......+..+..+++|
T Consensus 726 nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 3455555555555555433 4567777777765432221 1 12235688899998886554444457888999
Q ss_pred CEEEcCCCC-CcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCC
Q 008495 430 SCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508 (563)
Q Consensus 430 ~~L~L~~~~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 508 (563)
+.|++++|. +..++.. . ++++|+.|++++|......+ ...++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 805 ~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 805 EHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 999998875 4555543 2 68889999998875432221 2346788899999988888888888889999999886
Q ss_pred -cCCchhhhccCCCCCCEEECCCC-CCCcC
Q 008495 509 -SLQSIPEGFKNLTSLTELDLSDN-NISAL 536 (563)
Q Consensus 509 -~l~~l~~~l~~l~~L~~L~l~~n-~l~~~ 536 (563)
.+..+|..+..+++|+.+++++| .++.+
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCcccccc
Confidence 57778777788888999999988 45543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3e-22 Score=219.88 Aligned_cols=337 Identities=20% Similarity=0.267 Sum_probs=209.0
Q ss_pred hhhcCCCccEEEcCCCcC------C-CCCchhcccC-CccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccc
Q 008495 86 AIGELHMLKSLDVSFNSI------M-KIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (563)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l------~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~ 157 (563)
+|.++++|+.|.+..+.. . .+|..+..++ +|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++.++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 566666777666654321 1 3455555543 4777777776666666555 35667777777766666666666
Q ss_pred cCCCccEEEecCCc-ccccchhhhccccccceEEcCCCc-CCCCcccccCCCcccEEeccCC-cccccCCCcccccccce
Q 008495 158 DCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQN-RILSIPSSISGCCSLAE 234 (563)
Q Consensus 158 ~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~ 234 (563)
.+++|+.|+++++. +..++. +..+++|+.|++++|. +..+|..+..+++|+.|++++| .+..+|..+ ++++|+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 66777777776543 333332 4455555556555543 3445555555555555555554 233443333 3444555
Q ss_pred EEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCcccccc
Q 008495 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314 (563)
Q Consensus 235 L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (563)
|++++|... ..++. ...+|++|+++++.+..+|..+ .+++|++|.+.++....+.
T Consensus 709 L~Lsgc~~L----------------------~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 709 LNLSGCSRL----------------------KSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EeCCCCCCc----------------------ccccc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhcc
Confidence 555544211 11111 1123555666666655555443 4566776666554321110
Q ss_pred ccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcC-ChhhhccCCccEEECCCCC-C
Q 008495 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNS-I 392 (563)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-l 392 (563)
.. ...+ +......++|+.|++++|. +
T Consensus 764 ~~----------------------------------------------------~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 764 ER----------------------------------------------------VQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred cc----------------------------------------------------ccccchhhhhccccchheeCCCCCCc
Confidence 00 0000 0111234689999999885 5
Q ss_pred CcCCccccCCCCCcEEEcccCC-CCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCC
Q 008495 393 QELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471 (563)
Q Consensus 393 ~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 471 (563)
..+|..+..+++|+.|++++|. +..++.. ..+++|++|++++|......+. ..++|+.|++++|.+... +..+
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si 865 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWI 865 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCccccccc---cccccCEeECCCCCCccC-hHHH
Confidence 5689889999999999999984 5555443 2689999999999864332111 246899999999988764 5568
Q ss_pred CCCCCCCeEEcCCC-cccccchhhhccCCccEEEcCCCc
Q 008495 472 SSLPHLQELYLRRM-QLREAPTDILRLQQLRILDLSQNS 509 (563)
Q Consensus 472 ~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~ 509 (563)
..+++|+.|++++| ++..++.....+++|+.+++++|.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 89999999999997 788888888899999999999994
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-24 Score=192.60 Aligned_cols=284 Identities=20% Similarity=0.243 Sum_probs=179.5
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCc-chhhhc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (563)
..+||++.++++||.++. .....|+|..|+|+.+|. +|+.+++||.|||++|.|+.| |++|.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP---------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP---------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccCC---------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 568999999999999995 568999999999999985 899999999999999999987 679999
Q ss_pred CCCccEEEcCC-CcCCCCCc-hhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccccCcc-ccccCCCccEE
Q 008495 90 LHMLKSLDVSF-NSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (563)
Q Consensus 90 ~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L 165 (563)
++.|..|-+-+ |+|+.+|+ .|+++..|+.|.+.-|.+..++ +.+..++++..|.++++.+..++. .|..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99988777665 89998876 4889999999999999998665 678889999999999999998877 68888888888
Q ss_pred EecCCccccc------------chhhhccccccceEEcCCCcCCCCcc-cccCC-Cccc-EEeccCCcccccC-CCcccc
Q 008495 166 DVEGNKLTVL------------SNNLIASWTMLTELIASKNLLNGMPE-TIGSL-SRLI-RLDLHQNRILSIP-SSISGC 229 (563)
Q Consensus 166 ~l~~~~i~~~------------~~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~-~~L~-~L~l~~~~~~~~~-~~~~~~ 229 (563)
.+..|.+... ...+++......-..+....+..+++ .+... ..+. .+.-.......-| ..|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 8876652210 00112222211111222222221111 00000 0000 0000000000111 114445
Q ss_pred cccceEEcCCCCCccC-chhhcCCCCCcEEEccCCccccccccccc--eeeeEEEcCCCCCCC-CCccccCCCCCcEEEc
Q 008495 230 CSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLL 305 (563)
Q Consensus 230 ~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 305 (563)
++|++|++++|.++.+ ..+|.....++.|.+..|++..+....+. ..|+.|++.+|+|+. .|..|....+|.++++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 5555555555555544 23455555555555555555543332222 125555555555555 3334666667777777
Q ss_pred CCCcc
Q 008495 306 TGNPL 310 (563)
Q Consensus 306 ~~~~~ 310 (563)
-.|++
T Consensus 354 ~~Np~ 358 (498)
T KOG4237|consen 354 LSNPF 358 (498)
T ss_pred ccCcc
Confidence 66654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8.7e-22 Score=200.29 Aligned_cols=257 Identities=30% Similarity=0.372 Sum_probs=217.0
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcC
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 90 (563)
-.+|++++++++.+|..+. ++++.|++.+|+++.+|.. .++|++|++++|+++.+|.. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---c
Confidence 4579999999999999774 4699999999999998753 58999999999999998753 4
Q ss_pred CCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCC
Q 008495 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (563)
Q Consensus 91 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~ 170 (563)
++|+.|++++|.+..+|..+ ++|+.|++++|+++.+|.. .++|+.|++++|.+..++.. ..+|+.|++++|
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC
Confidence 68999999999998877533 6788999999999988763 46899999999999988653 346888999999
Q ss_pred cccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhc
Q 008495 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (563)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~ 250 (563)
.++.++. ...+|+.|++++|.+..+|.. .++|+.|++++|++..+|.. ..+|+.|++++|.+..+|..
T Consensus 333 ~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 333 QLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred ccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence 9987764 125799999999999988853 36788999999999988754 35799999999999988754
Q ss_pred CCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCcccc
Q 008495 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (563)
Q Consensus 251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (563)
.++|+.|++++|.++.+|.. ...|+.|++++|+++.+|..+..+++++.+++++|++..
T Consensus 401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 36899999999999988753 345899999999999999999999999999999999863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6e-21 Score=194.19 Aligned_cols=156 Identities=31% Similarity=0.386 Sum_probs=68.9
Q ss_pred CcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCcc
Q 008495 70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149 (563)
Q Consensus 70 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 149 (563)
-..|+++++.++.+|..+. .+|+.|++.+|.++.+|.. .++|++|++++|+++.+|.. .++|++|++.+|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 4445555555555554443 2455555555555554431 34555555555555544432 23444555555544
Q ss_pred ccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccc
Q 008495 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229 (563)
Q Consensus 150 ~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 229 (563)
..++.. .++|+.|++++|+++.++. ..++|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p 341 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---P 341 (788)
T ss_pred hhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---c
Confidence 444321 1334445555544444332 123344444444444443321 12344444444444443321 1
Q ss_pred cccceEEcCCCCCccCc
Q 008495 230 CSLAEFYMGNNALSALP 246 (563)
Q Consensus 230 ~~L~~L~l~~~~~~~l~ 246 (563)
.+|+.|++++|.+..+|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 342 SGLQELSVSDNQLASLP 358 (788)
T ss_pred cccceEecCCCccCCCC
Confidence 23444444444444433
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=4.3e-22 Score=178.02 Aligned_cols=292 Identities=24% Similarity=0.334 Sum_probs=179.2
Q ss_pred EEEccCCCCCCCcccccccCCCCeEecCCCccccCcc-ccccCCCccEEEecCCcccccchhhhccccccceEEcCC-Cc
Q 008495 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK-NL 195 (563)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~ 195 (563)
.++.++-.++++|..+. +.-..+++..|.|+.+|+ .|+.+++|+.||++.|.|+.|.+.+|+++..+..|.+.+ |.
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34555555665554433 355666777777777764 377777777777777777777777777777776665554 77
Q ss_pred CCCCcc-cccCCCcccEEeccCCccccc-CCCcccccccceEEcCCCCCccCch-hhcCCCCCcEEEccCCccccccccc
Q 008495 196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEA 272 (563)
Q Consensus 196 l~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~ 272 (563)
++.+|+ .|..+..|+.|.+..|++..+ ...+..++++..|.+.+|.+..++. .+..+..++++++..+.+-
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i------ 201 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI------ 201 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc------
Confidence 777664 466677777777777776633 3456667777777777777776665 5667777777777666532
Q ss_pred cceeeeEEEcCCCCCCC-------CCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccch
Q 008495 273 CQLRLSVLDLSNNSLSG-------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (563)
Q Consensus 273 ~~~~L~~L~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (563)
.+|++.. .+..++..+...-..+.+..+..+.+..+... .+.+...
T Consensus 202 ----------cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~----~esl~s~------------- 254 (498)
T KOG4237|consen 202 ----------CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS----LESLPSR------------- 254 (498)
T ss_pred ----------cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh----HHhHHHh-------------
Confidence 1122111 11112222222222222333222221111110 0000000
Q ss_pred hhHHHhhhccccccceeecCCCCCC-cCC-hhhhccCCccEEECCCCCCCcCC-ccccCCCCCcEEEcccCCCCCCChHH
Q 008495 346 EDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAI 422 (563)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 422 (563)
+ .+.+... ..| ..+..+++|+++++++|.++.+. .+|.....++.|.+..|++..+...+
T Consensus 255 ----------------~-~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~ 317 (498)
T KOG4237|consen 255 ----------------L-SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM 317 (498)
T ss_pred ----------------h-ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh
Confidence 0 0111111 111 24667788888888888888764 35778888888888888888888888
Q ss_pred hhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 423 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
|.++..|++|+|.+|+++.+...+|....+|..|++-.|
T Consensus 318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 888888888888888888877777888888888888765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4.7e-20 Score=189.08 Aligned_cols=245 Identities=25% Similarity=0.384 Sum_probs=119.8
Q ss_pred ccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCC
Q 008495 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126 (563)
Q Consensus 47 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 126 (563)
.+.|++.+..++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 3444444444444443332 244444444444444443322 244444444444444443322 2344444444444
Q ss_pred CCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCC
Q 008495 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206 (563)
Q Consensus 127 ~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~ 206 (563)
..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|+++.++.. + ...|+.|++++|.+..+|..+ .
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l--~ 324 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETL--P 324 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCccc--c
Confidence 44443332 244455555444444443332 2455555555555444322 1 124555555555555544332 2
Q ss_pred CcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCC
Q 008495 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286 (563)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 286 (563)
++|+.|++++|.+..+|..+ .++|+.|++++|.+..+|..+. ++|+.|++++|.++.+|.... ..|+.|++++|+
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~-~sL~~LdLs~N~ 399 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP-AALQIMQASRNN 399 (754)
T ss_pred ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH-HHHHHHhhccCC
Confidence 45566666666555555433 2456666666666665554332 456666666666665554322 236666666666
Q ss_pred CCCCCccc----cCCCCCcEEEcCCCccc
Q 008495 287 LSGLPPEI----GKMTTLRKLLLTGNPLR 311 (563)
Q Consensus 287 ~~~~~~~~----~~~~~L~~L~l~~~~~~ 311 (563)
+..+|..+ +..+.+..+++.+|++.
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 66655433 23466667777777653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.7e-20 Score=187.97 Aligned_cols=246 Identities=26% Similarity=0.411 Sum_probs=199.6
Q ss_pred hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhc
Q 008495 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (563)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (563)
+...|++++.+++++|..+. ++++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP- 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence 45689999999999998763 469999999999999887664 589999999999998887654
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
.+|+.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.+..+|..+. ++|++|++++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 479999999999988887664 579999999999998887554 589999999999988876553 4789999999
Q ss_pred CcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhh
Q 008495 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (563)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 249 (563)
|.+..++... .++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+ .++|+.|++++|.+..+|..+
T Consensus 314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 314 NSLTALPETL---PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred CccccCCccc---cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence 9888776432 3679999999999988887653 68999999999998877655 368999999999999888766
Q ss_pred cCCCCCcEEEccCCccccccccccc-----eeeeEEEcCCCCCCC
Q 008495 250 GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG 289 (563)
Q Consensus 250 ~~~~~L~~L~l~~~~l~~~~~~~~~-----~~L~~L~l~~~~~~~ 289 (563)
. ..|+.|++++|++..+|..... ..+..+++.+|.+..
T Consensus 387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 4 3789999999999877654322 347889999988764
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.4e-19 Score=141.90 Aligned_cols=166 Identities=28% Similarity=0.428 Sum_probs=129.1
Q ss_pred CCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCcc
Q 008495 38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALV 117 (563)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 117 (563)
.+.++++.+++.|.++++.++.+|..+..+.+|++|+++++++..+|.+++.+++|+.|++.-|++..+|..|+.++-|+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 34455577788888888888888778888888888888888888888888888888888888888878888888888888
Q ss_pred EEEccCCCCC--CCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCc
Q 008495 118 KFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (563)
Q Consensus 118 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (563)
.|++..|.+. .+|..|..++.|+.|+++++++..+|..++.+++|+.|.+..|.+-.++.. ++.++.|++|.+.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccce
Confidence 8888888776 567777777888888888888888888888888888888877777666655 6677777777777777
Q ss_pred CCCCccccc
Q 008495 196 LNGMPETIG 204 (563)
Q Consensus 196 l~~~~~~l~ 204 (563)
++.+|..++
T Consensus 185 l~vlppel~ 193 (264)
T KOG0617|consen 185 LTVLPPELA 193 (264)
T ss_pred eeecChhhh
Confidence 776664443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.4e-19 Score=139.47 Aligned_cols=159 Identities=31% Similarity=0.519 Sum_probs=149.7
Q ss_pred HhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchh
Q 008495 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (563)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~ 86 (563)
....+..|.+|.++++.+|+.+.. +++|+.|++.+++|+++|..++++++|+.|++.-+++..+|..
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~-------------l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAE-------------LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHH-------------hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 345677899999999999998865 6899999999999999999999999999999999999999999
Q ss_pred hhcCCCccEEEcCCCcCC--CCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccE
Q 008495 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~ 164 (563)
|+.++.|++||++.|++. .+|..|..+..|+.|.+++|.+..+|..++++++|+.|.+.++++..+|..++.++.|++
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 999999999999999887 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccchh
Q 008495 165 LDVEGNKLTVLSNN 178 (563)
Q Consensus 165 L~l~~~~i~~~~~~ 178 (563)
|.+.+|.++.+++.
T Consensus 178 lhiqgnrl~vlppe 191 (264)
T KOG0617|consen 178 LHIQGNRLTVLPPE 191 (264)
T ss_pred HhcccceeeecChh
Confidence 99999999988765
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=1.7e-16 Score=152.12 Aligned_cols=223 Identities=24% Similarity=0.252 Sum_probs=138.3
Q ss_pred cccccEEEccCCCcc-----chhHhhcCCCCCcEEEcCCCCCCC-------cchhhhcCCCccEEEcCCCcCC-CCCchh
Q 008495 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIM-KIPDEI 110 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~~~L~~L~l~~~~l~-~~~~~~ 110 (563)
..+++.|++.++.++ .++..+...++++.++++++.+.. ++..+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 556888888888774 455667777888888888876652 2345667778888888888775 333344
Q ss_pred cccC---CccEEEccCCCCCC-----Cccccccc-CCCCeEecCCCccc-----cCccccccCCCccEEEecCCcccccc
Q 008495 111 GSAT---ALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS 176 (563)
Q Consensus 111 ~~~~---~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~ 176 (563)
..+. +|++|++++|.+.. +...+..+ ++|+.|++++|.+. .+...+..+++|++|++++|.+....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 4444 38888888887762 22334455 77788888887766 33445666777888888777766321
Q ss_pred h----hhhccccccceEEcCCCcCCC-----CcccccCCCcccEEeccCCccccc-CCCc-----ccccccceEEcCCCC
Q 008495 177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-PSSI-----SGCCSLAEFYMGNNA 241 (563)
Q Consensus 177 ~----~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~L~l~~~~ 241 (563)
. ..+...++|++|++++|.++. +...+..+++|++|++++|.+... ...+ ...+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1 123344577777777776642 233455566777777777765521 0111 123567777777766
Q ss_pred Cc-----cCchhhcCCCCCcEEEccCCccc
Q 008495 242 LS-----ALPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 242 ~~-----~l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
++ .+...+..+++|+++++++|.++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 64 22334455566666666666665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=4.5e-16 Score=149.18 Aligned_cols=253 Identities=22% Similarity=0.243 Sum_probs=184.4
Q ss_pred HHHHHhhhcceeeCCCCcccccch-HHhhccccccCCCcccccccccEEEccCCCccc-------hhHhhcCCCCCcEEE
Q 008495 3 RILKAARTSGSLNLSNRSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-------LKEDLRNLPLLTVLN 74 (563)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-------l~~~~~~~~~L~~L~ 74 (563)
..++....++.++++++.++.-+. .+.+.+. ..+++++++++++.+.. ++..+..+++|+.|+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALR---------PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHh---------hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence 356677779999999999863221 1221111 25679999999887662 345788899999999
Q ss_pred cCCCCCCC-cchhhhcCC---CccEEEcCCCcCCC-----CCchhccc-CCccEEEccCCCCC-----CCcccccccCCC
Q 008495 75 VSHNKLSE-LPAAIGELH---MLKSLDVSFNSIMK-----IPDEIGSA-TALVKFDCSSNQLK-----ELPSSLGRCLNL 139 (563)
Q Consensus 75 l~~~~~~~-l~~~~~~~~---~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~~~~~~~L 139 (563)
+++|.+.. .+..+..+. +|++|++++|.+.. +...+..+ ++|+.|++++|.++ .+...+..+++|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 99999873 334444444 49999999998872 23345666 89999999999988 334456778899
Q ss_pred CeEecCCCccc-----cCccccccCCCccEEEecCCcccccch----hhhccccccceEEcCCCcCCCC-----cccc-c
Q 008495 140 SDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNGM-----PETI-G 204 (563)
Q Consensus 140 ~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~l~~~-----~~~l-~ 204 (563)
++|++++|.+. .++..+..+++|++|++++|.+..... ..+..+++|++|++++|.++.. ...+ .
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 99999999887 234456677899999999998874432 2356678899999999988641 1111 1
Q ss_pred CCCcccEEeccCCccc-----ccCCCcccccccceEEcCCCCCccC-----chhhcCC-CCCcEEEccCCc
Q 008495 205 SLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-----PAELGKL-SKLGTLDLHSNQ 264 (563)
Q Consensus 205 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~l~~~-~~L~~L~l~~~~ 264 (563)
..+.|++|++++|.+. .+...+..+++|+++++++|.+..- ...+... +.|+.+++.++.
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2478999999999885 3344556678999999999998833 3345555 788888887764
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=3.1e-15 Score=140.83 Aligned_cols=209 Identities=30% Similarity=0.381 Sum_probs=162.8
Q ss_pred hHHHHHhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCC
Q 008495 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (563)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~ 81 (563)
+.+++-+..-..+.++++.+.++|-..++ +. ...-...|++.|.+.++|..+..|..|+.+.++.|.+.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~~---------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--YD---------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCcccc--cc---------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 46788888899999999999998887765 22 55667788888888888888888888888888888888
Q ss_pred CcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCC
Q 008495 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (563)
Q Consensus 82 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~ 161 (563)
.+|..+.++..|++++|+.|.++.+|..+..++ |+.|-+++|+++.+|..++..+.|..|+.+.|++..++..+..+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 888888888888888888888888887777776 8888888888888887777777788888888877777777777777
Q ss_pred ccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCC
Q 008495 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (563)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 224 (563)
|+.|.+..|.+.+++.. +. .-.|..|+++.|.+..+|-.|..++.|++|-+.+|.+..=|.
T Consensus 191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 77777777777766665 33 344666777777777777777777777777777776654333
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=5.2e-14 Score=125.03 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=65.2
Q ss_pred CCCCeEecCCCcccc-----CccccccCCCccEEEecCCcccc----cchhhhccccccceEEcCCCcCCC-----Cccc
Q 008495 137 LNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MPET 202 (563)
Q Consensus 137 ~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~ 202 (563)
+.|+++.+..|.+.. +...|...+.|+.+.++.|.|.. .....+..+++|+.|++.+|.++. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 444445444444431 12234444555555555544431 122334455555555555555432 2334
Q ss_pred ccCCCcccEEeccCCccc-----ccCCCc-ccccccceEEcCCCCCc-----cCchhhcCCCCCcEEEccCCccc
Q 008495 203 IGSLSRLIRLDLHQNRIL-----SIPSSI-SGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 203 l~~~~~L~~L~l~~~~~~-----~~~~~~-~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
+..++.|+.+++++|.+. .+..++ ...++|+.+.+.+|.++ .+...+...+.|+.|++++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 455556666666666554 111122 23566677777776666 22233445677777777777763
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=1.7e-13 Score=121.83 Aligned_cols=234 Identities=24% Similarity=0.255 Sum_probs=131.9
Q ss_pred cccccEEEccCCCcc-----chhHhhcCCCCCcEEEcCCCCCC----Ccch-------hhhcCCCccEEEcCCCcCC-CC
Q 008495 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELPA-------AIGELHMLKSLDVSFNSIM-KI 106 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~~~----~l~~-------~~~~~~~L~~L~l~~~~l~-~~ 106 (563)
...+++++|+||.+. .+...+.+.+.|+..++++--.. .+|. ++-.+++|++|+||+|-+. ..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 455677777777666 34455666667777776653211 2222 2334455555555555443 11
Q ss_pred Cc----hhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccch----
Q 008495 107 PD----EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN---- 177 (563)
Q Consensus 107 ~~----~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~---- 177 (563)
+. -+.+++.|++|.+.+|.+.... ..+.+ -|.+|. ...-...-++|+.+...+|.+.+.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 11 1233444444444444443111 00000 000000 11223455778888888887664433
Q ss_pred hhhccccccceEEcCCCcCCC-----CcccccCCCcccEEeccCCccc-----ccCCCcccccccceEEcCCCCCcc---
Q 008495 178 NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSA--- 244 (563)
Q Consensus 178 ~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--- 244 (563)
..++..+.|+.+.+..|.+.. +..++..+++|+.||+.+|.++ .+...+...++|++|++++|.+..
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 346666788888888887732 3456777888888888888766 344556667788888888887762
Q ss_pred --Cchhh-cCCCCCcEEEccCCcccc-----cccccc-ceeeeEEEcCCCCC
Q 008495 245 --LPAEL-GKLSKLGTLDLHSNQLKE-----YCVEAC-QLRLSVLDLSNNSL 287 (563)
Q Consensus 245 --l~~~l-~~~~~L~~L~l~~~~l~~-----~~~~~~-~~~L~~L~l~~~~~ 287 (563)
+...+ ...++|+.+.+.+|.++. +..... .+.|+.|.+++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22222 346788888888887762 111111 33488888888877
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=1.5e-13 Score=129.64 Aligned_cols=191 Identities=33% Similarity=0.473 Sum_probs=171.1
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCC
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 91 (563)
...|++++.+.++|.++.. +..|+.+.+..|.+..+|..+.++..|+.|+++.|++..+|..+..+
T Consensus 78 ~~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l- 143 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL- 143 (722)
T ss_pred hhhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-
Confidence 4578999999999999876 57799999999999999999999999999999999999999888766
Q ss_pred CccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCc
Q 008495 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171 (563)
Q Consensus 92 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~ 171 (563)
-|+.|-+++|+++.+|..++...+|..|+.+.|.+.++|..+.++.+|+.|.+..|.+..+|+.+. .-.|..||++.|+
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence 499999999999999999999999999999999999999999999999999999999999999888 5589999999999
Q ss_pred ccccchhhhccccccceEEcCCCcCCCCcccccC---CCcccEEeccCCc
Q 008495 172 LTVLSNNLIASWTMLTELIASKNLLNGMPETIGS---LSRLIRLDLHQNR 218 (563)
Q Consensus 172 i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~---~~~L~~L~l~~~~ 218 (563)
+..++.+ |.+|+.|++|.|.+|.+..=|..+.. ..=.|+|+...|+
T Consensus 223 is~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 ISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9999888 99999999999999999886665433 2335777777774
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.9e-13 Score=124.93 Aligned_cols=185 Identities=25% Similarity=0.287 Sum_probs=85.9
Q ss_pred hccCCccEEECCCCCCCcCC--ccccCCCCCcEEEcccCCCCCCCh--HHhhcCCCCCEEEcCCCCCccc-CCcccCCCC
Q 008495 377 WEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQV-PSDGFKDIP 451 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~ 451 (563)
.+..+|+++.+.++.+...+ .....|++++.||++.|-+..+.. .....+|+|+.|+++.|++... ....-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 33445555555555544433 244455555555555555544322 2234555555555555554431 111112345
Q ss_pred cccEEeCCCccCCCCCC-CCCCCCCCCCeEEcCCC-cccccchhhhccCCccEEEcCCCcCCchh--hhccCCCCCCEEE
Q 008495 452 MLQILDLSYNIASLPEN-PPFSSLPHLQELYLRRM-QLREAPTDILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTELD 527 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~ 527 (563)
+|+.|.++.|.++.... .....+|+|+.|++.+| .+..-......++.|++||+++|++...+ .....++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555542211 11234555555555555 22222222333455555555555555443 2244555555555
Q ss_pred CCCCCCCc--CCCC----cccCcccCcEEEcCCCCccccc
Q 008495 528 LSDNNISA--LPPE----LGLLEPSLQALRLDGNPLRRYG 561 (563)
Q Consensus 528 l~~n~l~~--~~~~----~~~~~~~L~~L~l~~~~~~~~~ 561 (563)
++.|.+.+ .|+. .-...++|+.|++..|++.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 55555542 2221 0011155555555555554443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-13 Score=122.89 Aligned_cols=203 Identities=21% Similarity=0.220 Sum_probs=107.6
Q ss_pred cCCCCCcEEEcCCCCCCCcch--hhhcCCCccEEEcCCCcCC---CCCchhcccCCccEEEccCCCCCCCccc--ccccC
Q 008495 65 RNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLKELPSS--LGRCL 137 (563)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 137 (563)
+++.+|+.+.|.++.+...+. ....|++++.||++.|-+. .+-.....+++|+.|+++.|.+....++ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345555555555555443332 4445555555555555433 2222344555555555555555422111 11344
Q ss_pred CCCeEecCCCccc--cCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCc--ccccCCCcccEEe
Q 008495 138 NLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLD 213 (563)
Q Consensus 138 ~L~~L~l~~~~~~--~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~l~~~~~L~~L~ 213 (563)
.|+.|.+++|.++ ++..-+..+++|+.|.+.+|...-+.......+..|+.|++++|.+-.++ ...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 5555555555554 33333455566666666665422222222444455666666666665444 3455666777777
Q ss_pred ccCCccccc--CCC-----cccccccceEEcCCCCCccCc--hhhcCCCCCcEEEccCCcccc
Q 008495 214 LHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE 267 (563)
Q Consensus 214 l~~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~ 267 (563)
++.+.+..+ |.. ....++|+.|++..|.+..++ ..+..+++|+.+.+..+.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777766633 222 345677777777777775443 245566777777777776653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=3.1e-12 Score=126.01 Aligned_cols=193 Identities=33% Similarity=0.486 Sum_probs=117.7
Q ss_pred EEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccC-CccEEEccCCCCCCCcccccccCCCCeEecCCCccc
Q 008495 72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150 (563)
Q Consensus 72 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 150 (563)
.+++..+.+..-...+.....++.+++.++.+..++....... +|+.|+++++.+..++..+..+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4555555553222333444566666666666666665555553 666666666666666555666666666666666666
Q ss_pred cCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCccccc
Q 008495 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (563)
Q Consensus 151 ~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (563)
.++......+.|+.|++++|++..++.. ......|+++.+++|.....+..+....++..+.+.++++..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 6655555666666666666666666553 233444666666666554555555666666666666666665556666666
Q ss_pred ccceEEcCCCCCccCchhhcCCCCCcEEEccCCccc
Q 008495 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 231 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
+++.|++++|.+..++. +....+++.++++++.+.
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 66677777766666655 666666777777666554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=7.7e-13 Score=115.06 Aligned_cols=226 Identities=24% Similarity=0.230 Sum_probs=147.9
Q ss_pred hhcCCCccEEEcCCCc--CC-------CCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccc
Q 008495 87 IGELHMLKSLDVSFNS--IM-------KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~--l~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~ 157 (563)
+..+.+|.+|..+... +. .+|..+.-..+|+.+.++.|.-..+......-|.|.++......+...+ .+-
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~-~l~ 256 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP-SLL 256 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc-ccc
Confidence 3445666666665431 11 2334444556666666666655544433334466666666655444332 111
Q ss_pred cCCCccEEEecCCccc-ccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEE
Q 008495 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236 (563)
Q Consensus 158 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 236 (563)
..+.+.....+.-... ..-......+..|++++++.|.++.+.+++.-.|.++.|+++.|.+..+.. ++.+++|+.|+
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LD 335 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLD 335 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEee
Confidence 1122222111110000 000011223456888888888888888888888889999999988887744 78888899999
Q ss_pred cCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCC--ccccCCCCCcEEEcCCCcccccc
Q 008495 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLR 314 (563)
Q Consensus 237 l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 314 (563)
+++|.+..+..|-..+-|+++|.+.+|.+..+.....-.+|..||+++|++..+. .+++++|.|+++.+.+|++..++
T Consensus 336 LS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 336 LSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999888777777778888999999988887766655566899999999888744 45899999999999999987654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2.9e-12 Score=107.13 Aligned_cols=123 Identities=26% Similarity=0.357 Sum_probs=41.4
Q ss_pred ccccccEEEccCCCccchhHhhc-CCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhc-ccCCccEEE
Q 008495 43 EAVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFD 120 (563)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~ 120 (563)
++.++++|+|.++.|..+. .++ .+.+|+.|++++|.++.+. .+..+++|+.|++++|.++.+...+. .+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3566788888888887764 344 5678888888888887773 56677888888888888877755443 577888888
Q ss_pred ccCCCCCCCc--ccccccCCCCeEecCCCccccCcc----ccccCCCccEEEe
Q 008495 121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV 167 (563)
Q Consensus 121 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~l~~~~~L~~L~l 167 (563)
+++|++..+. ..+..+++|+.|++.+|.+...+. .+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888776543 244556666666666665553322 2444555555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=1.1e-12 Score=114.18 Aligned_cols=131 Identities=27% Similarity=0.339 Sum_probs=97.6
Q ss_pred cccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEe
Q 008495 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLD 213 (563)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~ 213 (563)
..+..|+++++++|.++.+.++..-.++++.|+++.|.+..+.. ++.+++|+.|++++|.+..+..+-.++-+++.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 34566777888888887777777777888888888888777766 7777788888888887777766666777788888
Q ss_pred ccCCcccccCCCcccccccceEEcCCCCCccCc--hhhcCCCCCcEEEccCCcccc
Q 008495 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE 267 (563)
Q Consensus 214 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~ 267 (563)
+++|.+..+ +.+..+.+|..|++++|+|..+. ..+++++.|+++.+.+|.+..
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888877766 45667777888888888777543 246777888888777777654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=9e-12 Score=122.76 Aligned_cols=175 Identities=35% Similarity=0.485 Sum_probs=78.8
Q ss_pred cCCccEEEccCCCCCCCcccccccC-CCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEc
Q 008495 113 ATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191 (563)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 191 (563)
.+.++.+++.++.++.++....... +|+.|+++++.+..++..+..+++|+.|+++.|++.+++.. ....+.|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheec
Confidence 3444444444444444444443332 44445554444444444444444455555544444444432 114444444445
Q ss_pred CCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCcccccccc
Q 008495 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271 (563)
Q Consensus 192 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 271 (563)
++|.+..+|........|+++.+++|.+...+..+..+.++..+.+.++.+..++..+..+++++.|++++|.++.++..
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~ 273 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSL 273 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccc
Confidence 55444444443333333444444444433333444444444444444444444344444444444555544444444442
Q ss_pred ccceeeeEEEcCCCCCC
Q 008495 272 ACQLRLSVLDLSNNSLS 288 (563)
Q Consensus 272 ~~~~~L~~L~l~~~~~~ 288 (563)
.....++.++++++.+.
T Consensus 274 ~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 274 GSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccCccCEEeccCcccc
Confidence 22223444444444433
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=2.6e-12 Score=107.37 Aligned_cols=104 Identities=33% Similarity=0.463 Sum_probs=19.8
Q ss_pred CCcEEEcccCCCCCCChHHhh-cCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEc
Q 008495 404 SLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (563)
Q Consensus 404 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 482 (563)
++++|++.+++|+.+.. ++ .+.+|+.|++++|.+..+.. +..+++|+.|++++|.++.........+|+|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 34444444444444322 12 23444444444444444321 334444444444444443332110112344444444
Q ss_pred CCCcccccc--hhhhccCCccEEEcCCCcCC
Q 008495 483 RRMQLREAP--TDILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 483 ~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~ 511 (563)
++|++.++. ..+..+++|+.|++.+|++.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 444443221 12333444444444444443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.9e-10 Score=120.97 Aligned_cols=123 Identities=28% Similarity=0.380 Sum_probs=62.2
Q ss_pred cccEEEccCCCccchhHhhcCCCCCcEEEcCCCC--CCCcch-hhhcCCCccEEEcCCC-cCCCCCchhcccCCccEEEc
Q 008495 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDC 121 (563)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l 121 (563)
.++.+.+.++.+..++... .+++|++|-+.++. +..++. .|..++.|++||+++| .+..+|..++.+-+||+|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3555555555555443322 23355555555553 333332 3455555555555554 34455555555555555555
Q ss_pred cCCCCCCCcccccccCCCCeEecCCCccc-cCccccccCCCccEEEecC
Q 008495 122 SSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~ 169 (563)
+++.+..+|..+.++..|.+|++..+... .++.....+++|++|.+..
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 55555555555555555555555554332 2222333355555555543
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=3.9e-11 Score=118.21 Aligned_cols=241 Identities=27% Similarity=0.349 Sum_probs=117.3
Q ss_pred CCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCC
Q 008495 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (563)
Q Consensus 67 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 146 (563)
+..++.+.+..+.+..+-..+..+.+|++|++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 334444444444444322234444555555555555554433344455555555555555444 2333444455555555
Q ss_pred CccccCccccccCCCccEEEecCCcccccch-hhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCC
Q 008495 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (563)
Q Consensus 147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (563)
|.+..+ ..+..++.|+.+++++|.+..+.. . ...+..++.+.+.+|.+..+. .+.....+..+++.++.+..+. .
T Consensus 150 N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~ 225 (414)
T KOG0531|consen 150 NLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-G 225 (414)
T ss_pred Ccchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-C
Confidence 555444 234445555555555555554444 2 244455555555555554332 1122223333355555444331 1
Q ss_pred ccccc--ccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCC----CC-ccccCCC
Q 008495 226 ISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LP-PEIGKMT 298 (563)
Q Consensus 226 ~~~~~--~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~~-~~~~~~~ 298 (563)
+.... +|+.++++++.+...+..+..+.++..+++.++.+...........+..+...++.+.. .. ......+
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 11122 25666666666665544555666666666666666554444444444444445544432 11 1245566
Q ss_pred CCcEEEcCCCcccc
Q 008495 299 TLRKLLLTGNPLRT 312 (563)
Q Consensus 299 ~L~~L~l~~~~~~~ 312 (563)
.++.+.+..++...
T Consensus 306 ~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 306 TLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccCcccc
Confidence 77777777776654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=6.8e-10 Score=116.83 Aligned_cols=105 Identities=30% Similarity=0.475 Sum_probs=64.4
Q ss_pred cccccEEEccCCC--ccchhH-hhcCCCCCcEEEcCCC-CCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEE
Q 008495 44 AVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (563)
Q Consensus 44 ~~~l~~L~l~~~~--i~~l~~-~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 119 (563)
+++++.|-+.++. +..++. .|..++.|++||+++| .+..+|..++.+-+|++|+++++.+..+|..+.++..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4456666666664 444443 3566777777777654 34466666666777777777777666677777777777777
Q ss_pred EccCCCCC-CCcccccccCCCCeEecCCCc
Q 008495 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNC 148 (563)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 148 (563)
++..+... .++.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 76655433 233344446667776665554
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=7.7e-11 Score=116.09 Aligned_cols=195 Identities=34% Similarity=0.429 Sum_probs=137.7
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (563)
.++.+.+..+.+..+...+..+.++..+++.++.+..+...+..+++|++|++++|.|+++.. +..++.|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC
Confidence 344455555555554455677788999999999988887657889999999999999988776 567778999999999
Q ss_pred CCcccCCcccCCCCcccEEeCCCccCCCCCC-CCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhh
Q 008495 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (563)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 516 (563)
.+..+.. +..++.|+.+++++|.+..... . ...+.+++.+++++|.+..+ ..+..+..+..+++.+|.++.+ ++
T Consensus 151 ~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~-~~ 225 (414)
T KOG0531|consen 151 LISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKL-EG 225 (414)
T ss_pred cchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceec-cC
Confidence 9988765 6668999999999998887654 3 57788899999999988765 2333444455556666666655 22
Q ss_pred ccCCCC--CCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCcccc
Q 008495 517 FKNLTS--LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRRY 560 (563)
Q Consensus 517 l~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 560 (563)
+...+. |+.+++++|++..++..+..+ ..+..+++.++++...
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRISNL 270 (414)
T ss_pred cccchhHHHHHHhcccCcccccccccccc-ccccccchhhcccccc
Confidence 333343 677777777666554333333 5666666666665443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=4e-09 Score=72.36 Aligned_cols=59 Identities=39% Similarity=0.584 Sum_probs=31.2
Q ss_pred CCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCc
Q 008495 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486 (563)
Q Consensus 428 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 486 (563)
+|++|++++|++..++...|..+++|++|++++|.++...+..|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555445555555555555555555444455555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.7e-09 Score=72.53 Aligned_cols=61 Identities=39% Similarity=0.633 Sum_probs=47.1
Q ss_pred CCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccC
Q 008495 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (563)
Q Consensus 403 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l 463 (563)
|+|+.|++++|++..++...|..+++|++|++++|.+..++..+|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777877777777777777788888888888888777777788888888888877753
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.9e-10 Score=95.93 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=92.9
Q ss_pred CCcEEEcCCCCCC--CcchhhhcCCCccEEEcCCCcCC-CCCchhcccCCccEEEccCCC-CCCC--cccccccCCCCeE
Q 008495 69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKEL--PSSLGRCLNLSDF 142 (563)
Q Consensus 69 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~L 142 (563)
.|+.+||+...++ ++-..++.|.+|+.|++.++.+. .+...+....+|+.|++++|. +++. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666655 33335566666777777666665 334455566667777776653 3321 1234566677777
Q ss_pred ecCCCccc-cCcc-cc-ccCCCccEEEecCCcc--ccc-chhhhccccccceEEcCCCcC-C-CCcccccCCCcccEEec
Q 008495 143 KASNNCIT-SLPE-DL-ADCSKMSKLDVEGNKL--TVL-SNNLIASWTMLTELIASKNLL-N-GMPETIGSLSRLIRLDL 214 (563)
Q Consensus 143 ~l~~~~~~-~i~~-~l-~~~~~L~~L~l~~~~i--~~~-~~~~~~~~~~L~~L~l~~~~l-~-~~~~~l~~~~~L~~L~l 214 (563)
++++|... +... .+ .--++|+.|+++|+.- ..- ...-...++++.+|++++|.. + .....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77666443 1100 01 1124566666666521 111 111134566777777776543 2 23344566677777777
Q ss_pred cCCccc--ccCCCcccccccceEEcCCCC
Q 008495 215 HQNRIL--SIPSSISGCCSLAEFYMGNNA 241 (563)
Q Consensus 215 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 241 (563)
+.|..- ...-.+...+.|.+|++.++-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 766422 111234556677777776653
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=7.6e-08 Score=99.41 Aligned_cols=103 Identities=28% Similarity=0.391 Sum_probs=56.4
Q ss_pred CCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc-ccchhhhccCCccEEEcCC
Q 008495 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQ 507 (563)
Q Consensus 429 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~ 507 (563)
++.|+|++|.+....+..+..+++|+.|+|++|.+....+..++.+++|+.|++++|++. .+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455556665555433334555566666666666555544555555566666666666555 4555555556666666666
Q ss_pred CcCC-chhhhccCC-CCCCEEECCCC
Q 008495 508 NSLQ-SIPEGFKNL-TSLTELDLSDN 531 (563)
Q Consensus 508 ~~l~-~l~~~l~~l-~~L~~L~l~~n 531 (563)
|.++ .+|..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5555 445444332 34455555555
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.61 E-value=1.2e-09 Score=99.94 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=90.7
Q ss_pred cCCccEEECCCCC-CCc--CCccccCCCCCcEEEcccC-CCCCCChHHh-hcCCCCCEEEcCCCCC-cccCCcc-cCCCC
Q 008495 379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN-KIKDWPDAIL-TSLSSLSCLKLDNNPL-RQVPSDG-FKDIP 451 (563)
Q Consensus 379 ~~~L~~L~l~~~~-l~~--l~~~l~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~L~~~~l-~~~~~~~-~~~~~ 451 (563)
+..+.++++..|. +++ +...-..+..|+.++.+++ .+++.....+ .++++|+.+-+.+|+- +...-.. -.+++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3445555555553 333 1122245677777777776 3334333333 4567788888877762 2222111 24667
Q ss_pred cccEEeCCCccCCCCC--CCCCCCCCCCCeEEcCCCc-cccc-----chhhhccCCccEEEcCCCcCC--chhhhccCCC
Q 008495 452 MLQILDLSYNIASLPE--NPPFSSLPHLQELYLRRMQ-LREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLT 521 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~~~-l~~~-----~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~l~ 521 (563)
.|+.+++..+...... ...-.+++.|+.+.++.|. +++. ...-.++..|+.+.+++|... ..-+.+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 7888888777553322 1223467888888888773 3321 222235677888888888765 3335677888
Q ss_pred CCCEEECCCCC
Q 008495 522 SLTELDLSDNN 532 (563)
Q Consensus 522 ~L~~L~l~~n~ 532 (563)
+|+++++.+|+
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 88888888883
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.1e-09 Score=107.02 Aligned_cols=175 Identities=26% Similarity=0.282 Sum_probs=116.9
Q ss_pred cccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcch-------hhhc---CCCccEEEcCCCcCCCCCchhc
Q 008495 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-------AIGE---LHMLKSLDVSFNSIMKIPDEIG 111 (563)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~-------~~~~---~~~L~~L~l~~~~l~~~~~~~~ 111 (563)
+.++.||+|.+.+|.+........--..|+.|-..+ .+..+.. .|.+ --.|...+++.|.+..+..++.
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence 447789999999988875322222223444443332 1211111 1111 2357777888888887777888
Q ss_pred ccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEc
Q 008495 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191 (563)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 191 (563)
-++.|++|+++.|+++... .+..+++|++|++++|.+..+|..-..--+|..|.+.+|.++.+.. +.++++|+.|++
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhhccch
Confidence 8888888888888888664 7778888888888888888776543233348888888888877665 777888888888
Q ss_pred CCCcCCCCc--ccccCCCcccEEeccCCccc
Q 008495 192 SKNLLNGMP--ETIGSLSRLIRLDLHQNRIL 220 (563)
Q Consensus 192 ~~~~l~~~~--~~l~~~~~L~~L~l~~~~~~ 220 (563)
+.|-+.... ..++.+..|+.|.+.||.+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888775432 23455667788888888765
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.7e-09 Score=93.25 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=90.6
Q ss_pred cccceeecCCCCCC--cCChhhhccCCccEEECCCCCCCc-CCccccCCCCCcEEEcccC-CCCCCCh-HHhhcCCCCCE
Q 008495 357 VTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRN-KIKDWPD-AILTSLSSLSC 431 (563)
Q Consensus 357 ~~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~ 431 (563)
..++.+++++..++ .+...+..|.+|+.+.+.+..+.+ +...+.+..+|+.++++.| +++.... ..+..|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34666666665554 334445566677777777766655 4444566667777777766 3443222 23566677777
Q ss_pred EEcCCCCCcccCCcc--cCCCCcccEEeCCCcc--CCCCCCCC-CCCCCCCCeEEcCCC-ccc-ccchhhhccCCccEEE
Q 008495 432 LKLDNNPLRQVPSDG--FKDIPMLQILDLSYNI--ASLPENPP-FSSLPHLQELYLRRM-QLR-EAPTDILRLQQLRILD 504 (563)
Q Consensus 432 L~L~~~~l~~~~~~~--~~~~~~L~~L~l~~n~--l~~~~~~~-~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~ 504 (563)
|+|++|.+....... -.--++|+.|+++++. +.....+. -..+|+|..|++++| .++ .....+..++.|+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 777776654311110 1122456666666641 11111111 134566666666665 333 2222344556666666
Q ss_pred cCCCcCCchhh---hccCCCCCCEEECCCC
Q 008495 505 LSQNSLQSIPE---GFKNLTSLTELDLSDN 531 (563)
Q Consensus 505 l~~~~l~~l~~---~l~~l~~L~~L~l~~n 531 (563)
++.|... +|+ .+...|+|.+|++.||
T Consensus 345 lsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 6666432 111 1455566666666666
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3.9e-07 Score=94.22 Aligned_cols=105 Identities=31% Similarity=0.390 Sum_probs=65.5
Q ss_pred cccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc-ccchhhhccCCccEEEcCCCcCC-chhhhccCCCCCCEEECC
Q 008495 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 529 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~ 529 (563)
.++.|+|++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3566666666666555556666666666666666665 55656666666666666666665 456666666666666666
Q ss_pred CCCCC-cCCCCcccCcccCcEEEcCCCC
Q 008495 530 DNNIS-ALPPELGLLEPSLQALRLDGNP 556 (563)
Q Consensus 530 ~n~l~-~~~~~~~~~~~~L~~L~l~~~~ 556 (563)
+|+++ .+|..+.....++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 66665 5555444332345566666654
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=6.6e-09 Score=79.99 Aligned_cols=129 Identities=22% Similarity=0.227 Sum_probs=90.6
Q ss_pred CCCEEEcCCCCCcccCC--cccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEc
Q 008495 428 SLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505 (563)
Q Consensus 428 ~L~~L~L~~~~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 505 (563)
-+..++|+.|++.++.. ..+.....|+.+++++|.+.+..+..-..++..+.+++.+|.+.++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34555666666654332 1245556777788888887776555556677888888888888888888888889999999
Q ss_pred CCCcCCchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCc
Q 008495 506 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (563)
Q Consensus 506 ~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (563)
+.|.+...|..+..+.+|-.|+..+|.+..+|.+++.. ...-..++.++++
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl 158 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPL 158 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcc
Confidence 99988888777766888888888888877777665442 2222334444444
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=4.5e-07 Score=78.60 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=52.6
Q ss_pred hhcCCCCCcEEEcCCCCCC-Cc----chhhhcCCCccEEEcCCCcCCCC-----Cch---------hcccCCccEEEccC
Q 008495 63 DLRNLPLLTVLNVSHNKLS-EL----PAAIGELHMLKSLDVSFNSIMKI-----PDE---------IGSATALVKFDCSS 123 (563)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~~-~l----~~~~~~~~~L~~L~l~~~~l~~~-----~~~---------~~~~~~L~~L~l~~ 123 (563)
++-+||+|+.++||+|.+. .. .+.+++-..|++|.+++|.+..+ ..+ ...-|.|+++.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3455666666666666544 11 12445555666666666654411 111 12344555555555
Q ss_pred CCCCCCcc-----cccccCCCCeEecCCCcccc------CccccccCCCccEEEecCCccc
Q 008495 124 NQLKELPS-----SLGRCLNLSDFKASNNCITS------LPEDLADCSKMSKLDVEGNKLT 173 (563)
Q Consensus 124 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~------i~~~l~~~~~L~~L~l~~~~i~ 173 (563)
|++...+. .+.....|+++.+..|.|.. +..++..+.+|+.||+.+|.++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 55543321 12223455555555554441 1123444555555555555444
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=1.1e-07 Score=82.19 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=105.9
Q ss_pred hhcCCCCCcEEEcCCCCCCC-----cchhhhcCCCccEEEcCCCcCC----CCC-------chhcccCCccEEEccCCCC
Q 008495 63 DLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIP-------DEIGSATALVKFDCSSNQL 126 (563)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~----~~~-------~~~~~~~~L~~L~l~~~~~ 126 (563)
-+..+..++.++||+|.|.+ +...+.+-++|+..+++.-... .++ +.+-+||+|+.++++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457888888898888773 3334555677888877764322 222 2344566666666666655
Q ss_pred C-CCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhh-------------hccccccceEEcC
Q 008495 127 K-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL-------------IASWTMLTELIAS 192 (563)
Q Consensus 127 ~-~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~-------------~~~~~~L~~L~l~ 192 (563)
. +.|.. +.+.++.-+.|++|.+++|.+..+...- ...-+.|+++...
T Consensus 105 g~~~~e~-------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 105 GSEFPEE-------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred CcccchH-------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4 22211 1122344444555555544443222211 2233557777777
Q ss_pred CCcCCCCcc-----cccCCCcccEEeccCCcccc------cCCCcccccccceEEcCCCCCcc-----CchhhcCCCCCc
Q 008495 193 KNLLNGMPE-----TIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLG 256 (563)
Q Consensus 193 ~~~l~~~~~-----~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~ 256 (563)
.|++...+. .+.....|+.+.+..|.|.. +...+..+.+|+.|++++|.++. +...+...+.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 777655432 23333567788888777661 12345567788888888887772 234456667778
Q ss_pred EEEccCCccc
Q 008495 257 TLDLHSNQLK 266 (563)
Q Consensus 257 ~L~l~~~~l~ 266 (563)
.|.+.+|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 8888877655
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=2.4e-07 Score=81.39 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCcccEEeccCCccccc--CCCcccccccceEEcCCCCCccCc--hhhcCCCCCcEEEccCCccc
Q 008495 206 LSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 206 ~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~ 266 (563)
+|++..+-+..|.+... .......+.+-.|+++.+++.+.. ..+..++.|..|.++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 35555555555554422 233444555556666666666442 34566667777766666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=1.2e-08 Score=100.05 Aligned_cols=126 Identities=29% Similarity=0.376 Sum_probs=96.1
Q ss_pred cccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCC
Q 008495 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (563)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 125 (563)
.|...+++.|.++.+..+++-++.|+.|+|++|++... +.+..|++|++|||+.|.+..+|..-..-.+|+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 47777888888887777888888899999999888876 37778888999999988888776543322338888998888
Q ss_pred CCCCcccccccCCCCeEecCCCccccCc--cccccCCCccEEEecCCccc
Q 008495 126 LKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLT 173 (563)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~ 173 (563)
++++ ..+.++.+|+.|++++|-+.... ..+..+..|+.|.+.||.+.
T Consensus 244 l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8877 46778888888888888666332 24566677888888888765
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.4e-07 Score=82.77 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred ccccceEEcCCCCCccCc--hhhcCCCCCcEEEccCCccccccc---cccceeeeEEEcCCCCCCC
Q 008495 229 CCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCV---EACQLRLSVLDLSNNSLSG 289 (563)
Q Consensus 229 ~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~ 289 (563)
++++..+-+-.|.+.+.. .....++.+..|+++.+++..+.. ....+.+..|.++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 445555555555554332 223444555556666666554332 2223335555555554433
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=3.6e-06 Score=79.71 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=58.7
Q ss_pred cCCccEEECCCCCCCcCCccccCCCCCcEEEcccC-CCCCCChHHhhcCCCCCEEEcCCC-CCcccCCcccCCCCcccEE
Q 008495 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQIL 456 (563)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~L~~L 456 (563)
+.+++.|++++|.++.+|. -.++|+.|.+++| .++.++.. + .++|++|++++| .+..++ ++|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP-------ESVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc-------cccceE
Confidence 4555566666665555551 1234666666554 22222221 1 245666666655 332221 235555
Q ss_pred eCCCccCCCCCCCCCCCC-CCCCeEEcCCCccc---ccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCC
Q 008495 457 DLSYNIASLPENPPFSSL-PHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n 531 (563)
++.++..... ..+ ++|+.|.+.+++.. .++.. --++|++|++++|....+|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCccc-----ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 5544333221 111 34555555432211 11110 01456666666665544444333 35666666554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=6.9e-08 Score=74.48 Aligned_cols=111 Identities=20% Similarity=0.299 Sum_probs=71.8
Q ss_pred ccccEEEccCCCccchhHh---hcCCCCCcEEEcCCCCCCCcchhhhc-CCCccEEEcCCCcCCCCCchhcccCCccEEE
Q 008495 45 VDLQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (563)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 120 (563)
+.+-.++|++|++-.+++. +....+|+.+++++|.+..+|..|.. .+.++.+++.+|.++.+|..+..++.|+.++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4456666777766655543 44456666667777777777665543 4467777777777777777777777777777
Q ss_pred ccCCCCCCCcccccccCCCCeEecCCCccccCccc
Q 008495 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155 (563)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~ 155 (563)
++.|.+...|..+..+.++-.|+..++....++-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77777776666666666666666666666555433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6.8e-07 Score=55.74 Aligned_cols=39 Identities=41% Similarity=0.647 Sum_probs=21.8
Q ss_pred CccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCC
Q 008495 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537 (563)
Q Consensus 499 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~ 537 (563)
.|++|++++|.++.+|..+.++++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666554566666666666666655443
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=8.5e-08 Score=88.17 Aligned_cols=291 Identities=16% Similarity=0.119 Sum_probs=158.9
Q ss_pred HHHHhh-hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCC-cc--chhHhhcCCCCCcEEEcCCCC
Q 008495 4 ILKAAR-TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IE--KLKEDLRNLPLLTVLNVSHNK 79 (563)
Q Consensus 4 ~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-i~--~l~~~~~~~~~L~~L~l~~~~ 79 (563)
+.++|+ .++.+.++++. .++....+.+. .+|+++++|.+.+|. ++ .+...-..|++|+.|++..|.
T Consensus 132 ~~~Rcgg~lk~LSlrG~r--~v~~sslrt~~--------~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 132 MISRCGGFLKELSLRGCR--AVGDSSLRTFA--------SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred Hhhhhccccccccccccc--cCCcchhhHHh--------hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 445554 67778887775 22222222111 238899999999984 33 233445678999999998864
Q ss_pred -CCCc--chhhhcCCCccEEEcCCC-cCC--CCCchhcccCCccEEEccCCCCCCC---cccccccCCCCeEecCCCccc
Q 008495 80 -LSEL--PAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCIT 150 (563)
Q Consensus 80 -~~~l--~~~~~~~~~L~~L~l~~~-~l~--~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~ 150 (563)
++.. -.....|++|++++++.| .+. .+...+.++..++.+..+||.=... -..-..+..+.++++..|...
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 4422 224467999999999988 455 3444456777788887777632221 112234555666665555322
Q ss_pred ---cCccccccCCCccEEEecCC-cccccchhh-hccccccceEEcCCCcC-CC--CcccccCCCcccEEeccCCccc--
Q 008495 151 ---SLPEDLADCSKMSKLDVEGN-KLTVLSNNL-IASWTMLTELIASKNLL-NG--MPETIGSLSRLIRLDLHQNRIL-- 220 (563)
Q Consensus 151 ---~i~~~l~~~~~L~~L~l~~~-~i~~~~~~~-~~~~~~L~~L~l~~~~l-~~--~~~~l~~~~~L~~L~l~~~~~~-- 220 (563)
.+...-..+..|+.|..+++ .+++..... .+++.+|+.+.+++++- +. +..--.+++.|+.+++..+...
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 11122344667777777665 333222222 24456677777776652 21 1111234566777777776433
Q ss_pred -ccCCCcccccccceEEcCCCCCc------cCchhhcCCCCCcEEEccCCcccc---ccccccceeeeEEEcCCCCC-CC
Q 008495 221 -SIPSSISGCCSLAEFYMGNNALS------ALPAELGKLSKLGTLDLHSNQLKE---YCVEACQLRLSVLDLSNNSL-SG 289 (563)
Q Consensus 221 -~~~~~~~~~~~L~~L~l~~~~~~------~l~~~l~~~~~L~~L~l~~~~l~~---~~~~~~~~~L~~L~l~~~~~-~~ 289 (563)
.+...-.+++.|+++.++.|... .+...-.....++.+.++++.... +........|+.+++.+++- +.
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 23333446777777777765322 112223445667777777776542 11112222366676666532 22
Q ss_pred --CCccccCCCCCcEEE
Q 008495 290 --LPPEIGKMTTLRKLL 304 (563)
Q Consensus 290 --~~~~~~~~~~L~~L~ 304 (563)
+...-..+++++...
T Consensus 442 ~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhHHHHhhCccceehh
Confidence 323334566665543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=2.2e-06 Score=53.41 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=24.0
Q ss_pred cccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCc
Q 008495 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (563)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l 83 (563)
+|++|++++|+|+++|..++++++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 46666666666666665566666666666666666655
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.7e-06 Score=70.68 Aligned_cols=123 Identities=24% Similarity=0.271 Sum_probs=59.0
Q ss_pred cEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCC
Q 008495 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (563)
Q Consensus 406 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 485 (563)
+.+++++.++....... ....+...++|++|.+..++. |..++.|..|.+.+|.++.+.+.--..+++|..|.+.+|
T Consensus 22 ~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhcc-ccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 34455555443322210 223455555666665555443 555555555555555555555444444555555555555
Q ss_pred cccccch--hhhccCCccEEEcCCCcCCchh----hhccCCCCCCEEECCCC
Q 008495 486 QLREAPT--DILRLQQLRILDLSQNSLQSIP----EGFKNLTSLTELDLSDN 531 (563)
Q Consensus 486 ~l~~~~~--~~~~~~~L~~L~l~~~~l~~l~----~~l~~l~~L~~L~l~~n 531 (563)
.+..+.+ .+..|++|+.|.+-+|.+..-+ ..+..+|+|+.||..+-
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5543321 2334555555555555544221 12344555555555443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.20 E-value=3.8e-06 Score=68.19 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=49.2
Q ss_pred HhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccc-hhhhccCCc
Q 008495 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQL 500 (563)
Q Consensus 422 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L 500 (563)
+|.++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +...+...|..+++++.+.+.+ .+..++ ..+..++.|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555666666653 355555555666666666666553 5555555566665666666654 333222 233446666
Q ss_pred cEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCCcCCCCcccCcccC
Q 008495 501 RILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSL 547 (563)
Q Consensus 501 ~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 547 (563)
+.+++..+ +..++. .+.++ .|+.+.+.+ .+..++...+..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666553 444432 25555 666666665 4555555555544444
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=2e-06 Score=88.64 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=37.3
Q ss_pred cccccEEEccCCCcc--chhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCC--CchhcccCCccEE
Q 008495 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI--PDEIGSATALVKF 119 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L 119 (563)
+|.|+.|.+.+-.+. ++.....++|+|+.||+++++++.+ ..++.+++|++|.+.+-.+... -..+.++++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 344555555554333 3333444555555555555555544 3445555555555544433321 1233445555555
Q ss_pred EccCC
Q 008495 120 DCSSN 124 (563)
Q Consensus 120 ~l~~~ 124 (563)
|+|..
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 55544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.8e-06 Score=70.60 Aligned_cols=126 Identities=24% Similarity=0.283 Sum_probs=85.4
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCcc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (563)
+++++.+.++..+...-.-..+...+|+++|.+..... |..++.|.+|.+.+|+++.+.+..-..+|+|..|.+.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 44555554433322111112356778888887776655 6778888888888888888777655667888888888887
Q ss_pred CCCCC-CCCCCCCCCCCeEEcCCCcccccc----hhhhccCCccEEEcCCCcC
Q 008495 463 ASLPE-NPPFSSLPHLQELYLRRMQLREAP----TDILRLQQLRILDLSQNSL 510 (563)
Q Consensus 463 l~~~~-~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~L~~L~l~~~~l 510 (563)
+...+ ...+..||+|++|.+-+|.+..-. ..+..+++|+.||+.+-.-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 76553 344677888888888888777322 2456788888888877543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=1e-05 Score=76.75 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=89.8
Q ss_pred ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCC-cccCCcccCCCCcccEEeCCCc-cCCCCCCCCCCCCCC
Q 008495 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPH 476 (563)
Q Consensus 399 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~ 476 (563)
+..+.+++.|++++|.++.++. -.++|++|.+++|.- ..++. .+ .++|++|++++| .+.. -.++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~s-------LP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISG-------LPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccc-------cccc
Confidence 4557889999999998888762 235799999998653 33432 23 368999999988 4432 1356
Q ss_pred CCeEEcCCCcccccchhhhccCCccEEEcCCCc-C--CchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcC
Q 008495 477 LQELYLRRMQLREAPTDILRLQQLRILDLSQNS-L--QSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 553 (563)
Q Consensus 477 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l--~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 553 (563)
|+.|++..+....++. --++|++|.+.++. . ..+|..+ -++|+.|++++|....+|+. ++.+|+.|+++
T Consensus 114 Le~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~---LP~SLk~L~ls 185 (426)
T PRK15386 114 VRSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEK---LPESLQSITLH 185 (426)
T ss_pred cceEEeCCCCCccccc---CcchHhheecccccccccccccccc--CCcccEEEecCCCcccCccc---ccccCcEEEec
Confidence 8888887765443221 01357788876533 2 1233211 15899999999986666643 33689999987
Q ss_pred CCC
Q 008495 554 GNP 556 (563)
Q Consensus 554 ~~~ 556 (563)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.08 E-value=1.1e-05 Score=65.54 Aligned_cols=121 Identities=18% Similarity=0.362 Sum_probs=62.1
Q ss_pred cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCC
Q 008495 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (563)
Q Consensus 398 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 477 (563)
.+..+++|+.+.+.. .+..+....|..+++|+++.+.++ +..++..+|..+++|+.+.+.+ .+...+...|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356677777777764 466666666777777888888764 6777777777887788888865 4555555667778888
Q ss_pred CeEEcCCCcccccch-hhhccCCccEEEcCCCcCCchh-hhccCCCCCC
Q 008495 478 QELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLT 524 (563)
Q Consensus 478 ~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~ 524 (563)
+.+.+..+ +..++. .+.++ .|+.+.+.+ .+..++ ..|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88888664 444433 34454 788887776 555554 3467777664
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=1.1e-06 Score=90.58 Aligned_cols=130 Identities=31% Similarity=0.367 Sum_probs=74.7
Q ss_pred CCCcEEEcccCCCC--CCChHHhhcCCCCCEEEcCCCCCccc-CCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCe
Q 008495 403 ASLQTLILSRNKIK--DWPDAILTSLSSLSCLKLDNNPLRQV-PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479 (563)
Q Consensus 403 ~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 479 (563)
.+|+.|+++|.+.- +++...-..+|+|+.|.+.|-.+... ....+.++|+|.+||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35555566554322 23333334466777777766544321 122256677777777777766655 34667777777
Q ss_pred EEcCCCccccc--chhhhccCCccEEEcCCCcCCc---h----hhhccCCCCCCEEECCCCCCC
Q 008495 480 LYLRRMQLREA--PTDILRLQQLRILDLSQNSLQS---I----PEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 480 L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~l~~---l----~~~l~~l~~L~~L~l~~n~l~ 534 (563)
|.+.+-.+..- ...+.+++.|+.||+|...... + -++-..+|+|+.||.|+..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77777666532 2345567777777777654321 1 123345777777777777654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=9.5e-06 Score=70.89 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=43.5
Q ss_pred CCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCc--ccccccCCCCeEec
Q 008495 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKA 144 (563)
Q Consensus 67 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l 144 (563)
+.+.+.|++++|++++| ....+++.|++|.|+-|+|+.+ ..+..|++|+.|.++.|.|..+. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34455566666665554 2344556666666666665555 34555666666666666555443 23445556666655
Q ss_pred CCC
Q 008495 145 SNN 147 (563)
Q Consensus 145 ~~~ 147 (563)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.00011 Score=64.07 Aligned_cols=90 Identities=26% Similarity=0.260 Sum_probs=52.5
Q ss_pred hhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCC--cCC-CCCchhcccCCccEEEccCCCCCCCc--cccc
Q 008495 60 LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLG 134 (563)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~ 134 (563)
+......+..|+.+++.+++++++ ..|..+++|++|.++.| ++. .++.....+++|+++++++|++..+. ..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 333444556666666767666655 34566777788888777 333 44444556677777777777765321 2233
Q ss_pred ccCCCCeEecCCCccc
Q 008495 135 RCLNLSDFKASNNCIT 150 (563)
Q Consensus 135 ~~~~L~~L~l~~~~~~ 150 (563)
.+.+|..|++..|...
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 4444555555555433
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=8.7e-05 Score=75.70 Aligned_cols=124 Identities=23% Similarity=0.224 Sum_probs=67.8
Q ss_pred cccccEEEccCC-Cccc--hhHhhcCCCCCcEEEcCCC-CCC-Cc----chhhhcCCCccEEEcCCCc-CCC--CCchhc
Q 008495 44 AVDLQKLILAHN-NIEK--LKEDLRNLPLLTVLNVSHN-KLS-EL----PAAIGELHMLKSLDVSFNS-IMK--IPDEIG 111 (563)
Q Consensus 44 ~~~l~~L~l~~~-~i~~--l~~~~~~~~~L~~L~l~~~-~~~-~l----~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~ 111 (563)
++.++.+.+.++ .+.. +......+++|+.|+++++ ... .. ......+++|+.|+++.+. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 466777777666 3333 4455667777777777762 111 11 1233456777777777775 442 122223
Q ss_pred ccCCccEEEccCCC-CC--CCcccccccCCCCeEecCCCccc---cCccccccCCCccEEEe
Q 008495 112 SATALVKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCIT---SLPEDLADCSKMSKLDV 167 (563)
Q Consensus 112 ~~~~L~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~L~~L~l 167 (563)
.|++|++|.+.+|. ++ .+......++.|++|++++|... .+......+++|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 36777777766665 34 23334456777777777766442 12222344555555544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.3e-05 Score=70.00 Aligned_cols=98 Identities=26% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhh--hccCCCCCCEEE
Q 008495 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELD 527 (563)
Q Consensus 450 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~ 527 (563)
+.+.++|++-+|.++++.. ...++.|+.|.|+=|+|+++ ..+..|+.|++|+|..|.|..+.+ .+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4567888898888887643 56789999999999999887 578889999999999998887643 478899999999
Q ss_pred CCCCCCC-cCCCC-----cccCcccCcEEE
Q 008495 528 LSDNNIS-ALPPE-----LGLLEPSLQALR 551 (563)
Q Consensus 528 l~~n~l~-~~~~~-----~~~~~~~L~~L~ 551 (563)
|..|+=. ..+.+ +..+ |+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 9888532 33322 1233 7888876
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00031 Score=61.38 Aligned_cols=84 Identities=21% Similarity=0.206 Sum_probs=37.8
Q ss_pred CCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCC--CcccCCcccCCCCcccEEeCCCccCCCC-CCCCCCCCCCCC
Q 008495 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP--LRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQ 478 (563)
Q Consensus 402 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~ 478 (563)
...|+.+++.++.++.+.. +..+++|+.|.++.|. +..-...-...+|+|+++++++|.+... ....+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555555544333 3445566666666552 2221111123345555555555555422 122334444444
Q ss_pred eEEcCCCcc
Q 008495 479 ELYLRRMQL 487 (563)
Q Consensus 479 ~L~l~~~~l 487 (563)
.|++.+|..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555554433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=0.0002 Score=73.10 Aligned_cols=232 Identities=21% Similarity=0.200 Sum_probs=131.5
Q ss_pred HHHHhhhcceeeCCCCc-ccccc-hHHhhccccccCCCcccccccccEEEccCC--Cccc----hhHhhcCCCCCcEEEc
Q 008495 4 ILKAARTSGSLNLSNRS-LRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHN--NIEK----LKEDLRNLPLLTVLNV 75 (563)
Q Consensus 4 ~~~~~~~~~~l~~~~~~-l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~i~~----l~~~~~~~~~L~~L~l 75 (563)
+.+.+..++.+.+.++. ++... ..+. +.+++|+.|+++++ .+.. .......+++|+.|++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 250 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALA------------LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL 250 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHH------------hhCchhheecccCcccccccchhHhhhhhhhcCCcCccch
Confidence 45556778888888774 44322 1111 33789999999873 2221 2235567899999999
Q ss_pred CCCC-CCCc--chhhhcCCCccEEEcCCCc-CC--CCCchhcccCCccEEEccCCCCC---CCcccccccCCCCeEecCC
Q 008495 76 SHNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASN 146 (563)
Q Consensus 76 ~~~~-~~~l--~~~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~ 146 (563)
+++. ++.. ......|++|++|.+.+|. ++ .+......+++|++|++++|... .+.....++++++.+.+..
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 9988 5533 2233448999999988886 55 44555677999999999988664 1223345577777765444
Q ss_pred CccccCccccccCCCccEEEecCCcc---cccchhhhccccccceEEcCCCcCCCCc--ccccCCCcccEEeccCCcccc
Q 008495 147 NCITSLPEDLADCSKMSKLDVEGNKL---TVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILS 221 (563)
Q Consensus 147 ~~~~~i~~~l~~~~~L~~L~l~~~~i---~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~l~~~~~L~~L~l~~~~~~~ 221 (563)
..- +..++.+.+.+... ..........++.++.+.+..+...... ..+..++.|. ..+...
T Consensus 331 ~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---- 396 (482)
T KOG1947|consen 331 LNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---- 396 (482)
T ss_pred cCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----
Confidence 321 44444444443321 1233333566666776666665533221 2334444442 111111
Q ss_pred cCCCcccccccceEEcCCCCCccCc--hhhcC-CCCCcEEEccCCcc
Q 008495 222 IPSSISGCCSLAEFYMGNNALSALP--AELGK-LSKLGTLDLHSNQL 265 (563)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~-~~~L~~L~l~~~~l 265 (563)
......++.|+++.+...... ..... +.+++.+++.++..
T Consensus 397 ----~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 397 ----LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ----hccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 111222677777776544221 11111 56677777776653
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.10 E-value=0.00013 Score=62.20 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=49.3
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
++..+.||++.+.+..+...|+.++.|..|+++.+++..+|.++.+...+..+++.+|..+..|.++...+++++++..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 45566666666655555555555555666666666665556666655556666666666666666666666666666655
Q ss_pred CCC
Q 008495 124 NQL 126 (563)
Q Consensus 124 ~~~ 126 (563)
+.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0038 Score=32.09 Aligned_cols=16 Identities=63% Similarity=0.839 Sum_probs=6.8
Q ss_pred ccEEEcCCCcCCchhh
Q 008495 500 LRILDLSQNSLQSIPE 515 (563)
Q Consensus 500 L~~L~l~~~~l~~l~~ 515 (563)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.80 E-value=0.00018 Score=71.19 Aligned_cols=174 Identities=28% Similarity=0.329 Sum_probs=115.1
Q ss_pred ccEEEccCCCcc-----chhHhhcCCCCCcEEEcCCCCCCCc-----chhhhcC-CCccEEEcCCCcCC-----CCCchh
Q 008495 47 LQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSEL-----PAAIGEL-HMLKSLDVSFNSIM-----KIPDEI 110 (563)
Q Consensus 47 l~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~~~~l-----~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~ 110 (563)
+..+.+.+|.+. .+-..+...++|+.|+++++.+... ...+... +.|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677777777766 3446777888888888888877621 2233333 55677777777666 344456
Q ss_pred cccCCccEEEccCCCCC-----CCccccc----ccCCCCeEecCCCcccc-----CccccccCCC-ccEEEecCCccccc
Q 008495 111 GSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTVL 175 (563)
Q Consensus 111 ~~~~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~-----i~~~l~~~~~-L~~L~l~~~~i~~~ 175 (563)
....+++.++++.|.+. .++..+. ...++++|.+.+|.++. +...+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66778888888888774 1222233 46678888888887661 2223555555 77788888877754
Q ss_pred chh----hhccc-cccceEEcCCCcCCC-----CcccccCCCcccEEeccCCccc
Q 008495 176 SNN----LIASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (563)
Q Consensus 176 ~~~----~~~~~-~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~~~~~ 220 (563)
... .+..+ ..+++++++.|.++. +.+.+..++.++.+.++++.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 222 23334 567888888888854 3456677789999999998876
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.66 E-value=0.0055 Score=29.13 Aligned_cols=11 Identities=55% Similarity=0.839 Sum_probs=3.1
Q ss_pred CCEEECCCCCC
Q 008495 523 LTELDLSDNNI 533 (563)
Q Consensus 523 L~~L~l~~n~l 533 (563)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.27 E-value=0.0088 Score=30.73 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=6.2
Q ss_pred ccEEEccCCCccchh
Q 008495 47 LQKLILAHNNIEKLK 61 (563)
Q Consensus 47 l~~L~l~~~~i~~l~ 61 (563)
|++|++++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 344444444444443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.21 E-value=0.00021 Score=70.69 Aligned_cols=174 Identities=26% Similarity=0.338 Sum_probs=121.8
Q ss_pred CcEEEcCCCCCCC-----cchhhhcCCCccEEEcCCCcCCC-----CCchhccc-CCccEEEccCCCCCC-----Ccccc
Q 008495 70 LTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA-TALVKFDCSSNQLKE-----LPSSL 133 (563)
Q Consensus 70 L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~~-----~~~~~ 133 (563)
+..|.+.+|.+.. +...+..+..|+.|++++|.+.. +-..+... ..+++|++..|.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7888999998873 34467788999999999998871 11223333 567788888887762 33456
Q ss_pred cccCCCCeEecCCCccc-----cCccccc----cCCCccEEEecCCcccccch----hhhccccc-cceEEcCCCcCCCC
Q 008495 134 GRCLNLSDFKASNNCIT-----SLPEDLA----DCSKMSKLDVEGNKLTVLSN----NLIASWTM-LTELIASKNLLNGM 199 (563)
Q Consensus 134 ~~~~~L~~L~l~~~~~~-----~i~~~l~----~~~~L~~L~l~~~~i~~~~~----~~~~~~~~-L~~L~l~~~~l~~~ 199 (563)
.....++.+++..|.+. .++..+. ...++++|++++|.++.... ..+...+. ++.+++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66888999999888774 2233333 57889999999998773322 23444455 67788888887642
Q ss_pred -----cccccCC-CcccEEeccCCccc-----ccCCCcccccccceEEcCCCCCc
Q 008495 200 -----PETIGSL-SRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS 243 (563)
Q Consensus 200 -----~~~l~~~-~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 243 (563)
...+..+ ..++.++++.|.+. .+...+..+++++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2344445 67899999999887 33445667789999999999887
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.08 E-value=0.015 Score=27.64 Aligned_cols=16 Identities=63% Similarity=0.928 Sum_probs=7.1
Q ss_pred CccEEEcCCCcCCchh
Q 008495 499 QLRILDLSQNSLQSIP 514 (563)
Q Consensus 499 ~L~~L~l~~~~l~~l~ 514 (563)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.72 E-value=0.025 Score=30.44 Aligned_cols=23 Identities=52% Similarity=0.732 Sum_probs=16.6
Q ss_pred CCCCCEEECCCCCCCcCCCCccc
Q 008495 520 LTSLTELDLSDNNISALPPELGL 542 (563)
Q Consensus 520 l~~L~~L~l~~n~l~~~~~~~~~ 542 (563)
+++|+.|++++|+++.+|...+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 36778888888888877776553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.72 E-value=0.025 Score=30.44 Aligned_cols=23 Identities=52% Similarity=0.732 Sum_probs=16.6
Q ss_pred CCCCCEEECCCCCCCcCCCCccc
Q 008495 520 LTSLTELDLSDNNISALPPELGL 542 (563)
Q Consensus 520 l~~L~~L~l~~n~l~~~~~~~~~ 542 (563)
+++|+.|++++|+++.+|...+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 36778888888888877776553
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.45 E-value=0.00098 Score=57.06 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=56.4
Q ss_pred hhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeE
Q 008495 63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (563)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 142 (563)
.+..+...+.||++.+++..+...|+.+..|..++++.+.+..+|.++.....+++++.+.|..+..|.++...+.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 35556667777777776666655666666667777776666666666666666666666666666666666666666666
Q ss_pred ecCCCcc
Q 008495 143 KASNNCI 149 (563)
Q Consensus 143 ~l~~~~~ 149 (563)
+..++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6555543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.0066 Score=51.13 Aligned_cols=83 Identities=23% Similarity=0.091 Sum_probs=52.8
Q ss_pred CCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccC-Cccc-CCCCcccEEeCCCc-cCCCCCCCCCCCCCCCCe
Q 008495 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479 (563)
Q Consensus 403 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~ 479 (563)
..++.++-+++.|.......+.++++++.|.+.+|.-.+.. ...+ ...++|+.|++++| .|++.+...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45678888888888877777888888888888887632211 0001 13456666666655 555555555666666666
Q ss_pred EEcCCC
Q 008495 480 LYLRRM 485 (563)
Q Consensus 480 L~l~~~ 485 (563)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 655554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.01 Score=49.97 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=35.8
Q ss_pred ccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCc-cccc--chhhhccCCccEEEcCCC-cCCc-hhhhccCCCCCCEEE
Q 008495 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREA--PTDILRLQQLRILDLSQN-SLQS-IPEGFKNLTSLTELD 527 (563)
Q Consensus 453 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~--~~~~~~~~~L~~L~l~~~-~l~~-l~~~l~~l~~L~~L~ 527 (563)
++.+|.+++.+...+...+..++.++.|.+.+|. +.+. ...-...++|+.|++++| .|+. --.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4455555555555544445555555555555552 2211 000012355555555555 2441 113445555555555
Q ss_pred CCC
Q 008495 528 LSD 530 (563)
Q Consensus 528 l~~ 530 (563)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.16 E-value=0.33 Score=25.96 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCCCcccCCc
Q 008495 427 SSLSCLKLDNNPLRQVPSD 445 (563)
Q Consensus 427 ~~L~~L~L~~~~l~~~~~~ 445 (563)
++|++|+|.+|.+..++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.16 E-value=0.33 Score=25.96 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCCCcccCCc
Q 008495 427 SSLSCLKLDNNPLRQVPSD 445 (563)
Q Consensus 427 ~~L~~L~L~~~~l~~~~~~ 445 (563)
++|++|+|.+|.+..++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.22 E-value=0.56 Score=25.03 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=14.3
Q ss_pred CCCCEEECCCCCCCcCCC
Q 008495 521 TSLTELDLSDNNISALPP 538 (563)
Q Consensus 521 ~~L~~L~l~~n~l~~~~~ 538 (563)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888875
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.96 E-value=0.57 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=9.4
Q ss_pred CCccEEEecCCcccccc
Q 008495 160 SKMSKLDVEGNKLTVLS 176 (563)
Q Consensus 160 ~~L~~L~l~~~~i~~~~ 176 (563)
++|++|++++|.+++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 56677777777665443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.51 E-value=1.3 Score=23.79 Aligned_cols=16 Identities=56% Similarity=0.787 Sum_probs=9.2
Q ss_pred CCCCEEECCCCCCCcC
Q 008495 521 TSLTELDLSDNNISAL 536 (563)
Q Consensus 521 ~~L~~L~l~~n~l~~~ 536 (563)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666665544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.73 E-value=0.97 Score=24.73 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=10.0
Q ss_pred ccCcEEEcCCCCcccc
Q 008495 545 PSLQALRLDGNPLRRY 560 (563)
Q Consensus 545 ~~L~~L~l~~~~~~~~ 560 (563)
++|+.||+++|.+++.
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4566666666666543
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.51 E-value=1.9 Score=22.97 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=7.3
Q ss_pred CCCCCEEECCCC
Q 008495 520 LTSLTELDLSDN 531 (563)
Q Consensus 520 l~~L~~L~l~~n 531 (563)
+++|++|+|++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666666
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.28 E-value=4.5 Score=40.31 Aligned_cols=63 Identities=27% Similarity=0.259 Sum_probs=42.9
Q ss_pred CCCCCCCeEEcCCCccccc---chhhhccCCccEEEcCCC--cCCchhhh-ccCCCCCCEEECCCCCCC
Q 008495 472 SSLPHLQELYLRRMQLREA---PTDILRLQQLRILDLSQN--SLQSIPEG-FKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 472 ~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~--~l~~l~~~-l~~l~~L~~L~l~~n~l~ 534 (563)
.+.+.+..+++++|++..+ ....+..|.|+.|+|++| .+...++. =-...-|++|-+.||++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4568888888999977744 222345788999999998 55543321 122356888999999876
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.66 E-value=36 Score=33.55 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=30.3
Q ss_pred ccEEeccCCcccccCC----CcccccccceEEcCCCCCc-----cCchhhcCCCCCcEEEccCCccc
Q 008495 209 LIRLDLHQNRILSIPS----SISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 209 L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
+..+.++.+....-+. ....-+.+.+|++++|... -+|..+.....++.+..+.+..+
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 4455555555442221 2334556667777776555 23444555556666666655443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.94 E-value=11 Score=37.74 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=44.9
Q ss_pred cCCCCcccEEeCCCccCCCCCCC-C-CCCCCCCCeEEcCCC--cccccchhhh--ccCCccEEEcCCCcCC
Q 008495 447 FKDIPMLQILDLSYNIASLPENP-P-FSSLPHLQELYLRRM--QLREAPTDIL--RLQQLRILDLSQNSLQ 511 (563)
Q Consensus 447 ~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~~~L~~L~l~~~--~l~~~~~~~~--~~~~L~~L~l~~~~l~ 511 (563)
-.+.|.+..++|++|.+..+... . -...|+|..|+|++| .+... ..+. ...-|++|-+.+|.+.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 35778899999999987655321 1 235699999999999 44432 2232 3456899999999865
No 93
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=46.08 E-value=10 Score=20.75 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.3
Q ss_pred cceeeCCCCcccccchHH
Q 008495 11 SGSLNLSNRSLRDVPNEV 28 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~ 28 (563)
-.++++++++|+++|.++
T Consensus 10 ~~~V~C~~~~L~~vP~~l 27 (28)
T PF01462_consen 10 GLTVDCSGRGLTAVPSDL 27 (28)
T ss_dssp TTEEEETTSS-SSS-STS
T ss_pred CCEeECCCCCCCccCCCC
Confidence 467899999999999865
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.10 E-value=1.6e+02 Score=29.45 Aligned_cols=58 Identities=24% Similarity=0.161 Sum_probs=30.8
Q ss_pred CccEEECCCCCCCcCC----ccccCCCCCcEEEcccCCCCCCChH----HhhcCCCCCEEEcCCCC
Q 008495 381 EITKLDLSRNSIQELP----PELSSCASLQTLILSRNKIKDWPDA----ILTSLSSLSCLKLDNNP 438 (563)
Q Consensus 381 ~L~~L~l~~~~l~~l~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~L~~~~ 438 (563)
-+..+.++.|..+.-+ ..+..-+.+.+|+++++.+.+.... .+....+++....+.|.
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 3555666666554421 1234556777788888877664432 22333455555555443
No 95
>PRK09718 hypothetical protein; Validated
Probab=28.81 E-value=94 Score=31.00 Aligned_cols=14 Identities=0% Similarity=-0.007 Sum_probs=6.8
Q ss_pred CCccEEEcCCCcCC
Q 008495 498 QQLRILDLSQNSLQ 511 (563)
Q Consensus 498 ~~L~~L~l~~~~l~ 511 (563)
+.|+..|++.|.+.
T Consensus 228 T~LkgVDFSdC~Le 241 (512)
T PRK09718 228 VRISTGNFKDCITE 241 (512)
T ss_pred CcCCCccccccccc
Confidence 34555555555444
No 96
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=25.25 E-value=36 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.4
Q ss_pred cceeeCCCCcccccchHHhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYK 30 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~ 30 (563)
-.++++++++++++|.++..
T Consensus 10 ~~~V~C~~~~L~~vP~~iP~ 29 (33)
T smart00013 10 GTAVDCSGRGLTEVPLDLPP 29 (33)
T ss_pred CCEeEeCCCCcCccCCCCCc
Confidence 45789999999999987753
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.03 E-value=61 Score=39.88 Aligned_cols=30 Identities=47% Similarity=0.737 Sum_probs=0.0
Q ss_pred EcCCCcCCchhhh-ccCCCCCCEEECCCCCC
Q 008495 504 DLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533 (563)
Q Consensus 504 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l 533 (563)
||++|+|+.||.. |..+++|+.|+|++|++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Done!