Query 008495
Match_columns 563
No_of_seqs 244 out of 3003
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 04:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-51 1.2E-55 426.7 37.4 495 11-559 13-559 (606)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-51 1.6E-55 434.6 36.2 503 4-558 95-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.6E-50 8.9E-55 420.2 40.4 498 11-559 14-561 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.5E-50 5.1E-55 430.7 36.2 530 4-558 72-693 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 9.7E-49 3.3E-53 413.7 48.0 527 11-559 6-598 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-47 8.2E-52 403.1 48.8 501 47-561 6-576 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-48 2.9E-52 401.2 32.8 478 9-535 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.7E-46 9.3E-51 389.8 39.2 477 47-561 14-539 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 6.5E-47 2.2E-51 392.0 31.5 493 11-559 9-532 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-45 2.2E-49 375.0 35.9 484 8-559 4-511 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-45 1.6E-49 392.5 34.5 486 12-559 7-561 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 8.9E-44 3E-48 368.5 31.5 475 9-535 28-532 (570)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-43 1.3E-47 358.9 28.6 452 12-534 3-481 (520)
14 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-42 2.1E-46 359.9 37.4 494 12-559 34-581 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-42 4.9E-47 354.7 29.9 423 9-511 21-481 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-42 9.3E-47 371.0 29.8 469 8-534 23-560 (844)
17 4eco_A Uncharacterized protein 100.0 2.2E-42 7.4E-47 359.5 27.6 416 45-537 81-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-42 1.8E-46 353.3 30.1 450 9-534 26-510 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 1.2E-41 4.1E-46 358.8 32.0 415 45-539 323-845 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 2E-40 6.7E-45 349.6 34.3 430 68-561 323-843 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-40 6.9E-45 341.4 30.8 447 46-558 32-510 (562)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-40 1.5E-44 339.0 29.4 443 9-534 31-510 (562)
23 4eco_A Uncharacterized protein 100.0 4.5E-40 1.5E-44 342.0 27.1 413 9-490 81-602 (636)
24 1jl5_A Outer protein YOPM; leu 100.0 5E-39 1.7E-43 319.4 25.3 419 44-558 10-429 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-37 1.1E-41 324.0 34.6 477 9-534 52-580 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 2.5E-37 8.5E-42 307.2 24.9 404 8-534 10-429 (454)
27 1o6v_A Internalin A; bacterial 100.0 1.7E-35 5.9E-40 297.2 33.3 347 89-513 44-390 (466)
28 1o6v_A Internalin A; bacterial 100.0 3.7E-35 1.2E-39 294.8 33.1 348 44-492 45-392 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 5.7E-35 2E-39 293.5 28.9 379 10-488 11-408 (455)
30 3v47_A TOLL-like receptor 5B a 100.0 1.4E-34 4.8E-39 290.6 31.0 363 94-534 13-408 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-34 4.7E-39 287.7 27.1 363 44-529 41-407 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-33 1.2E-37 277.7 27.7 351 5-467 38-390 (457)
33 4fmz_A Internalin; leucine ric 100.0 1.4E-32 4.8E-37 265.6 30.8 307 156-559 40-347 (347)
34 4fmz_A Internalin; leucine ric 100.0 3.4E-32 1.2E-36 262.9 30.7 306 64-463 40-345 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 6.8E-32 2.3E-36 264.9 25.1 305 136-534 44-352 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 3.8E-31 1.3E-35 259.6 27.4 305 113-511 44-352 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 9.3E-31 3.2E-35 264.2 26.1 314 71-488 14-333 (477)
38 2id5_A Lingo-1, leucine rich r 100.0 5.2E-30 1.8E-34 258.6 29.3 313 117-511 14-333 (477)
39 3oja_B Anopheles plasmodium-re 100.0 7.9E-30 2.7E-34 263.7 27.3 305 136-534 50-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 2E-29 6.7E-34 260.7 24.7 129 45-173 51-184 (597)
41 1xku_A Decorin; proteoglycan, 100.0 3.1E-29 1.1E-33 240.0 23.6 282 8-309 30-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 9E-29 3.1E-33 236.9 24.2 287 184-556 33-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 4.5E-28 1.5E-32 231.9 28.5 288 184-556 31-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 7E-32 2.4E-36 271.6 1.3 371 92-534 4-440 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-29 1.9E-33 238.4 20.9 280 9-309 33-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-30 5.1E-35 261.8 9.0 290 9-310 3-353 (461)
47 3ogk_B Coronatine-insensitive 100.0 1.6E-29 5.5E-34 262.7 5.3 397 60-534 65-526 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-26 1.4E-30 233.1 26.5 258 10-312 41-298 (622)
49 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-25 7E-30 228.0 28.7 256 186-511 42-297 (622)
50 3ogk_B Coronatine-insensitive 99.9 2.3E-28 8E-33 254.0 6.3 409 44-531 72-548 (592)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-26 5.8E-31 218.5 14.7 241 45-286 50-302 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 3.9E-26 1.3E-30 220.6 17.0 266 9-311 31-314 (353)
53 4fcg_A Uncharacterized protein 99.9 9E-26 3.1E-30 214.7 19.1 223 44-267 80-315 (328)
54 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.8E-30 212.2 20.0 246 257-559 11-262 (306)
55 2z66_A Variable lymphocyte rec 99.9 8.2E-26 2.8E-30 213.8 18.1 242 10-266 8-261 (306)
56 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-26 1.2E-30 216.4 15.4 241 68-310 50-303 (313)
57 4fcg_A Uncharacterized protein 99.9 7E-26 2.4E-30 215.4 16.5 224 9-245 81-316 (328)
58 2z80_A TOLL-like receptor 2, v 99.9 7.6E-26 2.6E-30 218.5 16.2 271 228-559 29-315 (353)
59 2p1m_B Transport inhibitor res 99.9 5.2E-28 1.8E-32 251.6 0.3 153 378-531 370-541 (594)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.9E-30 209.2 14.5 218 12-266 14-238 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 4.4E-24 1.5E-28 213.3 25.4 243 256-559 57-304 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 4.7E-24 1.6E-28 212.3 25.2 241 257-558 47-292 (440)
63 2p1m_B Transport inhibitor res 99.9 3.3E-27 1.1E-31 245.5 2.0 424 12-509 46-542 (594)
64 3zyj_A Leucine-rich repeat-con 99.9 2.1E-24 7.2E-29 214.8 20.7 239 11-266 45-292 (440)
65 3zyi_A Leucine-rich repeat-con 99.9 3E-24 1E-28 214.5 20.9 239 11-266 56-303 (452)
66 1ozn_A Reticulon 4 receptor; N 99.9 8E-24 2.8E-28 197.9 22.2 158 377-534 77-238 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.9 9.2E-25 3.2E-29 207.2 16.0 236 11-266 12-250 (317)
68 1wwl_A Monocyte differentiatio 99.9 2.9E-25 9.8E-30 210.2 11.3 198 66-266 93-309 (312)
69 2o6q_A Variable lymphocyte rec 99.9 6.7E-23 2.3E-27 189.7 22.4 200 358-559 17-219 (270)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-24 4.3E-29 206.3 10.3 239 4-263 29-272 (317)
71 1wwl_A Monocyte differentiatio 99.9 6.6E-25 2.3E-29 207.7 6.2 245 41-311 39-309 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 5.5E-23 1.9E-27 191.2 19.1 217 12-243 10-237 (276)
73 3oja_A Leucine-rich immune mol 99.9 4.7E-23 1.6E-27 206.7 16.9 233 17-266 15-250 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 2.8E-22 9.7E-27 186.4 20.9 184 376-559 48-238 (276)
75 3oja_A Leucine-rich immune mol 99.9 2.1E-23 7.1E-28 209.2 11.8 234 228-552 32-269 (487)
76 1h6u_A Internalin H; cell adhe 99.9 6.1E-22 2.1E-26 186.6 18.5 195 44-270 40-234 (308)
77 1p9a_G Platelet glycoprotein I 99.9 5.4E-22 1.8E-26 184.9 17.1 197 9-243 10-208 (290)
78 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.4E-26 182.4 18.7 201 64-267 6-209 (290)
79 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.2E-26 184.5 18.2 197 90-294 40-236 (308)
80 2o6q_A Variable lymphocyte rec 99.9 9.6E-21 3.3E-25 175.2 23.7 158 377-534 58-218 (270)
81 3m19_A Variable lymphocyte rec 99.9 7.7E-21 2.6E-25 173.7 20.1 175 382-558 16-192 (251)
82 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.3E-26 177.1 13.2 192 69-263 32-236 (239)
83 3rfs_A Internalin B, repeat mo 99.9 3.1E-20 1.1E-24 171.8 20.5 180 376-558 37-218 (272)
84 2xwt_C Thyrotropin receptor; s 99.9 3.5E-21 1.2E-25 174.7 13.3 196 356-556 30-237 (239)
85 2ca6_A RAN GTPase-activating p 99.8 9.4E-22 3.2E-26 192.3 9.0 223 44-266 31-316 (386)
86 3rfs_A Internalin B, repeat mo 99.8 2.1E-20 7.3E-25 173.0 16.7 192 357-557 41-234 (272)
87 2ca6_A RAN GTPase-activating p 99.8 2.2E-21 7.4E-26 189.7 9.9 236 2-246 25-319 (386)
88 3m19_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 165.4 19.6 177 358-536 15-194 (251)
89 3goz_A Leucine-rich repeat-con 99.8 8.2E-21 2.8E-25 183.6 9.4 241 14-266 3-297 (362)
90 2ast_B S-phase kinase-associat 99.8 4.8E-21 1.7E-25 183.8 7.5 240 47-289 49-307 (336)
91 4glp_A Monocyte differentiatio 99.8 5.1E-20 1.8E-24 174.0 13.4 220 44-266 63-307 (310)
92 4glp_A Monocyte differentiatio 99.8 4E-20 1.4E-24 174.8 10.9 198 44-244 90-308 (310)
93 3goz_A Leucine-rich repeat-con 99.8 2.3E-20 7.7E-25 180.5 9.4 179 380-559 80-298 (362)
94 1h6t_A Internalin B; cell adhe 99.8 2.1E-19 7.3E-24 167.6 15.6 172 377-559 43-214 (291)
95 1h6t_A Internalin B; cell adhe 99.8 4E-19 1.4E-23 165.7 17.3 169 44-220 45-213 (291)
96 2ast_B S-phase kinase-associat 99.8 9.1E-20 3.1E-24 174.9 11.5 247 9-271 47-311 (336)
97 3cvr_A Invasion plasmid antige 99.8 1.5E-18 5.2E-23 175.1 18.5 179 357-559 59-244 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.3E-23 175.7 17.9 186 45-251 59-252 (571)
99 4ay9_X Follicle-stimulating ho 99.8 4.8E-19 1.7E-23 170.2 14.0 236 9-263 9-256 (350)
100 3e6j_A Variable lymphocyte rec 99.8 9.5E-18 3.2E-22 150.5 17.6 153 381-535 20-173 (229)
101 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.9E-23 167.0 12.9 174 383-558 21-202 (361)
102 4ezg_A Putative uncharacterize 99.8 3.1E-18 1E-22 150.0 12.9 153 400-559 41-195 (197)
103 1m9s_A Internalin B; cell inva 99.8 6.3E-18 2.1E-22 172.7 16.8 172 44-223 42-213 (605)
104 1m9s_A Internalin B; cell inva 99.8 6.3E-18 2.2E-22 172.6 16.8 169 358-536 44-212 (605)
105 2o6s_A Variable lymphocyte rec 99.8 5.7E-18 2E-22 149.9 14.3 176 360-543 10-188 (208)
106 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.9E-23 151.6 10.5 154 377-535 41-195 (197)
107 1xeu_A Internalin C; cellular 99.8 2.8E-18 9.5E-23 157.3 12.1 170 358-538 20-189 (263)
108 2o6s_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 149.4 14.3 168 382-558 9-178 (208)
109 3e6j_A Variable lymphocyte rec 99.8 2.4E-17 8.4E-22 147.8 17.5 152 405-559 21-173 (229)
110 2v9t_B SLIT homolog 2 protein 99.7 2.6E-17 8.9E-22 146.5 16.2 150 383-534 14-165 (220)
111 1xeu_A Internalin C; cellular 99.7 3.8E-18 1.3E-22 156.4 10.6 169 45-222 19-187 (263)
112 4ay9_X Follicle-stimulating ho 99.7 1.1E-17 3.7E-22 160.8 14.0 196 357-555 30-233 (350)
113 2v9t_B SLIT homolog 2 protein 99.7 2.8E-17 9.5E-22 146.4 15.5 150 360-511 14-165 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 3.5E-17 1.2E-21 145.7 14.5 148 361-510 15-165 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 5.8E-17 2E-21 144.3 15.7 150 383-534 14-166 (220)
116 2xot_A Amphoterin-induced prot 99.7 2.8E-17 9.6E-22 158.5 13.1 173 360-534 21-202 (361)
117 4fs7_A Uncharacterized protein 99.7 1.6E-15 5.6E-20 148.1 21.3 64 81-146 60-126 (394)
118 1dce_A Protein (RAB geranylger 99.7 9.2E-19 3.1E-23 177.8 -2.1 179 42-223 346-549 (567)
119 4fs7_A Uncharacterized protein 99.7 2.6E-15 8.8E-20 146.7 19.9 323 63-480 66-393 (394)
120 1dce_A Protein (RAB geranylger 99.7 8.1E-18 2.8E-22 170.9 0.6 192 8-214 348-567 (567)
121 3sb4_A Hypothetical leucine ri 99.7 1.8E-15 6.3E-20 143.9 16.0 101 379-481 225-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.6 9.2E-16 3.1E-20 130.6 10.3 130 427-559 24-161 (168)
123 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.9E-20 145.4 11.7 126 401-528 200-328 (329)
124 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.7E-20 124.9 11.0 126 426-554 16-149 (149)
125 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 127.8 10.8 131 68-199 24-162 (168)
126 4b8c_D Glucose-repressible alc 99.6 1.1E-15 3.8E-20 160.3 8.4 194 10-217 174-369 (727)
127 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 124.9 8.6 124 44-168 16-148 (149)
128 4fdw_A Leucine rich hypothetic 99.6 5.9E-14 2E-18 136.2 19.4 260 252-557 112-382 (401)
129 4fdw_A Leucine rich hypothetic 99.6 8.3E-14 2.8E-18 135.1 20.0 214 277-534 159-383 (401)
130 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 8.8E-20 128.7 8.1 132 399-533 15-152 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.6 2.9E-15 9.8E-20 128.4 8.2 136 38-174 12-154 (176)
132 2wfh_A SLIT homolog 2 protein 99.6 6.6E-14 2.2E-18 121.5 14.7 126 383-511 13-139 (193)
133 2wfh_A SLIT homolog 2 protein 99.5 6E-14 2E-18 121.8 13.7 127 360-488 13-139 (193)
134 4gt6_A Cell surface protein; l 99.5 7.5E-13 2.6E-17 129.2 23.0 128 398-531 260-388 (394)
135 1w8a_A SLIT protein; signaling 99.5 5E-14 1.7E-18 122.4 12.9 127 383-511 11-139 (192)
136 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.6E-18 118.1 15.0 128 405-535 9-138 (177)
137 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 117.9 14.9 128 382-511 9-137 (177)
138 1w8a_A SLIT protein; signaling 99.5 6.8E-14 2.3E-18 121.5 12.7 127 360-488 11-139 (192)
139 4gt6_A Cell surface protein; l 99.5 7E-13 2.4E-17 129.4 21.1 131 375-510 260-390 (394)
140 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4.1E-19 152.4 4.7 175 45-220 173-354 (727)
141 1ds9_A Outer arm dynein; leuci 99.5 4.6E-15 1.6E-19 129.9 -0.3 129 45-175 23-155 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 9.4E-15 3.2E-19 127.9 -1.1 116 79-196 36-152 (198)
143 4h09_A Hypothetical leucine ri 99.4 1.3E-10 4.4E-15 112.9 25.5 83 399-483 236-318 (379)
144 3g39_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 105.9 12.6 106 381-488 10-115 (170)
145 2r9u_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 105.6 12.9 108 382-491 14-121 (174)
146 4h09_A Hypothetical leucine ri 99.3 1.3E-10 4.6E-15 112.8 22.5 310 155-544 41-355 (379)
147 3un9_A NLR family member X1; l 99.3 7.9E-14 2.7E-18 133.9 -1.7 179 379-558 71-283 (372)
148 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 104.2 12.0 103 406-511 15-118 (174)
149 3g39_A Variable lymphocyte rec 99.3 2.3E-11 7.8E-16 103.0 11.9 104 405-511 11-115 (170)
150 3un9_A NLR family member X1; l 99.2 2.6E-12 8.8E-17 123.4 4.3 155 44-198 71-253 (372)
151 2ifg_A High affinity nerve gro 99.0 1.5E-09 5.1E-14 104.0 11.0 103 384-488 12-116 (347)
152 2ifg_A High affinity nerve gro 99.0 1.9E-09 6.4E-14 103.3 11.4 101 431-534 12-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.5E-14 102.0 5.4 156 376-534 135-320 (362)
154 2ra8_A Uncharacterized protein 98.8 1E-08 3.6E-13 97.3 8.7 39 205-243 277-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 6.4E-09 2.2E-13 89.1 6.0 114 60-173 28-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.8 1E-08 3.4E-13 87.9 6.9 107 44-150 35-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 2.2E-08 7.4E-13 83.1 -1.0 91 395-485 53-149 (176)
158 3e4g_A ATP synthase subunit S, 98.3 2E-07 7E-12 77.3 3.2 84 451-535 61-154 (176)
159 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.9E-11 77.2 5.2 60 66-126 168-232 (267)
160 1pgv_A TMD-1, tropomodulin TMD 98.0 9.7E-06 3.3E-10 68.6 6.0 106 44-149 40-169 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 2.2E-05 7.6E-10 66.4 6.8 115 59-173 32-170 (197)
162 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.4E-10 72.6 4.9 78 44-122 169-259 (267)
163 3rfe_A Platelet glycoprotein I 97.3 0.00038 1.3E-08 55.0 6.4 54 502-557 12-67 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00039 1.3E-08 54.9 4.2 56 11-81 10-68 (130)
165 2lz0_A Uncharacterized protein 91.3 0.39 1.3E-05 35.3 5.5 45 415-460 8-52 (100)
166 2lz0_A Uncharacterized protein 90.6 0.4 1.4E-05 35.2 5.0 49 436-485 5-53 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-51 Score=426.74 Aligned_cols=495 Identities=20% Similarity=0.211 Sum_probs=418.6
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCc-chhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (563)
..+++|++++++++|.++. +++++|+++++.+..++. .|.++++|++|++++|.++.+ +..|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence 3679999999999999874 579999999999998764 899999999999999999987 55899
Q ss_pred cCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccc--cCccccccCCCccE
Q 008495 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK 164 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~i~~~l~~~~~L~~ 164 (563)
++++|++|++++|.+..+ |..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..+..+++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999876 788999999999999999999776 67899999999999999998 47889999999999
Q ss_pred EEecCCcccccchhhhccccccc----eEEcCCCcCCCCcccccCCCcccEEeccCCccc--ccCCCcccccccceEEc-
Q 008495 165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM- 237 (563)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l- 237 (563)
|++++|.+..+....++.+..|+ .+++++|.++.++.......+|+.|++++|.+. ..+..+..+++++.+++
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 99999999988877788887765 799999999888776666669999999999764 33444455555555444
Q ss_pred --------------------------------CCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCC
Q 008495 238 --------------------------------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (563)
Q Consensus 238 --------------------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 285 (563)
..+.+......+..+++|+.++++++.+..++......+|++|++++|
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence 334444332337778899999999998888774444456999999999
Q ss_pred CCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecC
Q 008495 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (563)
Q Consensus 286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (563)
.+..+| .+ .+++|+++++++|...... .....+.+++++++
T Consensus 318 ~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-------------------------------------~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 318 QLKQFP-TL-DLPFLKSLTLTMNKGSISF-------------------------------------KKVALPSLSYLDLS 358 (606)
T ss_dssp CCSSCC-CC-CCSSCCEEEEESCSSCEEC-------------------------------------CCCCCTTCCEEECC
T ss_pred cCcccc-cC-CCCccceeeccCCcCccch-------------------------------------hhccCCCCCEEECc
Confidence 887777 45 8899999999888432110 01124678999999
Q ss_pred CCCCCcC---ChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCCh-HHhhcCCCCCEEEcCCCCCcc
Q 008495 366 GMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQ 441 (563)
Q Consensus 366 ~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~ 441 (563)
++.+... +..+..+++|++|++++|.++.++..+..+++|+.|++++|++.+... ..+..+++|++|++++|.+..
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 9988755 778889999999999999999988889999999999999999988765 567899999999999999998
Q ss_pred cCCcccCCCCcccEEeCCCccCCC-CCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCch-hhhcc
Q 008495 442 VPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFK 518 (563)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~ 518 (563)
.....+..+++|++|++++|.++. ..+..+..+++|+.|++++|+++.+ +..+..+++|++|++++|.++.+ |..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 777779999999999999999986 3577889999999999999999865 56688999999999999999976 78899
Q ss_pred CCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 519 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
.+++|+.|++++|+++.+|..+..++++|+.|++++|++..
T Consensus 519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 99999999999999999998877764579999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-51 Score=434.57 Aligned_cols=503 Identities=27% Similarity=0.354 Sum_probs=340.1
Q ss_pred HHHHhhhcceeeCCCCccc-ccch--HHhhccccccCCCcccccccccEEEccCCCcc-chhHhh-cCCCCCcEEEcCCC
Q 008495 4 ILKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHN 78 (563)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~l~~~~-~~~~~L~~L~l~~~ 78 (563)
.+...+++++||++++.+. .+|. .+ .. +++|++|++++|.+. .+|..+ .++++|++|++++|
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~------------l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSL-GS------------CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGG-GG------------CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHH-hC------------CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 3456788999999999987 4555 33 22 566777777777665 233332 56677777777777
Q ss_pred CCCCcc-hh---hhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccc-cCc
Q 008495 79 KLSELP-AA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLP 153 (563)
Q Consensus 79 ~~~~l~-~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~ 153 (563)
.+...+ .. +.++++|++|++++|.+..... +..+++|++|++++|.+......+.++++|++|++++|.+. .++
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence 666432 22 5566666666666666553322 25566666666666666643333666666666666666665 344
Q ss_pred cccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCC-CCcccccCC-CcccEEeccCCccc-ccCCCccccc
Q 008495 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCC 230 (563)
Q Consensus 154 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~~~~~~ 230 (563)
..+..+++|++|++++|.+...... ..+++|++|++++|.+. .+|..+... ++|++|++++|.+. .+|..+..++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 5566666666666666665533322 15556666666666654 455554443 56666666666655 4455556666
Q ss_pred ccceEEcCCCCCc-cCchh-hcCCCCCcEEEccCCccc-cccccccce--eeeEEEcCCCCCCC----------------
Q 008495 231 SLAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQL--RLSVLDLSNNSLSG---------------- 289 (563)
Q Consensus 231 ~L~~L~l~~~~~~-~l~~~-l~~~~~L~~L~l~~~~l~-~~~~~~~~~--~L~~L~l~~~~~~~---------------- 289 (563)
+|++|++++|.+. .+|.. +..+++|++|++++|.+. .++...... +|++|++++|.+.+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 6666666666555 45543 555666666666666554 233222221 34455555444443
Q ss_pred -----------CCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccc
Q 008495 290 -----------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (563)
Q Consensus 290 -----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (563)
+|..++.+++|++|++++|.+...... .....+.
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-----------------------------------~l~~l~~ 443 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-----------------------------------SLGSLSK 443 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-----------------------------------GGGGCTT
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-----------------------------------HHhcCCC
Confidence 344444455555555555444311100 1122357
Q ss_pred cceeecCCCCCC-cCChhhhccCCccEEECCCCCCCc-CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 359 SKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 359 l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
++++++.++.+. .++..+..+++|+.|++++|.++. +|..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 889999999887 677788889999999999998884 777888999999999999999877777788899999999999
Q ss_pred CCCcccCCcccCCCCcccEEeCCCccCCCCCC------------------------------------------------
Q 008495 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPEN------------------------------------------------ 468 (563)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------------------------------------ 468 (563)
|++.+..+..+..+++|+.|++++|.++...+
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 99987666668899999999999987652221
Q ss_pred ----------------------CCCCCCCCCCeEEcCCCccc-ccchhhhccCCccEEEcCCCcCC-chhhhccCCCCCC
Q 008495 469 ----------------------PPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLT 524 (563)
Q Consensus 469 ----------------------~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~l~~L~ 524 (563)
..++.+++|+.|++++|+++ .+|..++.++.|+.|++++|.++ .+|..+.++++|+
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 683 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCC
Confidence 23455788999999999988 78899999999999999999998 7899999999999
Q ss_pred EEECCCCCCC-cCCCCcccCcccCcEEEcCCCCcc
Q 008495 525 ELDLSDNNIS-ALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 525 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
.|++++|+++ .+|..+..+ ++|+.|++++|+++
T Consensus 684 ~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 684 ILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLS 717 (768)
T ss_dssp EEECCSSCCEECCCGGGGGC-CCCSEEECCSSEEE
T ss_pred EEECCCCcccCcCChHHhCC-CCCCEEECcCCccc
Confidence 9999999998 666666665 89999999999874
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-50 Score=420.16 Aligned_cols=498 Identities=22% Similarity=0.278 Sum_probs=420.0
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCc-chhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (563)
-+.++|++.+++++|.++. ..+++|++++|.++.+ +..|..+++|++|++++|.+..+ |..|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP---------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred CceEECCCCCcccCcCCCC---------------CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 4579999999999999884 4699999999999987 56899999999999999999976 66899
Q ss_pred cCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCC-cccccccCCCCeEecCCCccccCc-cccccCCCccEE
Q 008495 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL 165 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L 165 (563)
++++|++|++++|.+..+ |..+..+++|++|++++|.++.+ +..+.++++|++|++++|.+..++ +.+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 999999999999999855 77899999999999999999987 577899999999999999998763 445559999999
Q ss_pred EecCCcccccchhhhccccccc--eEEcCCCcCCCCcccccCCCcccEEeccCCccc-----------------------
Q 008495 166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----------------------- 220 (563)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~----------------------- 220 (563)
++++|.+..+....+..++.|+ .+++++|.+..++.......+|+.|+++++...
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 9999999999888899999999 899999999887666666678999999887511
Q ss_pred ---cc-CCCccccc--ccceEEcCCCCCccCch-hhcCCCCCcEEEccCCccccccccccce-eeeEEEcCCCCCCCC-C
Q 008495 221 ---SI-PSSISGCC--SLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGL-P 291 (563)
Q Consensus 221 ---~~-~~~~~~~~--~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~L~~L~l~~~~~~~~-~ 291 (563)
.+ +..+..+. +|+.|++++|.+..++. .+..+++|++|++++|.++.++...... +|++|++++|.+..+ +
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 00 01122222 78999999999997755 4889999999999999999887765554 499999999999885 5
Q ss_pred ccccCCCCCcEEEcCCCccc-cccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCC
Q 008495 292 PEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (563)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (563)
..++.+++|+++++++|.+. .++...+ ...+.+++++++++.+.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------------------~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCL-----------------------------------ENLENLRELDLSHDDIE 363 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTT-----------------------------------TTCTTCCEEECCSSCCC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhh-----------------------------------hccCcCCEEECCCCccc
Confidence 57889999999999999764 2222111 12357899999999887
Q ss_pred cC---ChhhhccCCccEEECCCCCCCcC-CccccCCCCCcEEEcccCCCCCCCh-HHhhcCCCCCEEEcCCCCCcccCCc
Q 008495 371 AI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSD 445 (563)
Q Consensus 371 ~~---~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~ 445 (563)
.. +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|++..... ..+..+++|++|++++|.+......
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 55 56788899999999999998874 5678899999999999999887543 4478899999999999999988877
Q ss_pred ccCCCCcccEEeCCCccCCCC---CCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCch-hhhccCC
Q 008495 446 GFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520 (563)
Q Consensus 446 ~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l 520 (563)
.+..+++|++|++++|.++.. ....+..+++|+.|++++|+++.+ +..+..+++|++|++++|.++.+ |+.+.++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 899999999999999998752 335688999999999999999976 57788999999999999999864 6789999
Q ss_pred CCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 521 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
++| .|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999 99999999998887765545899999999999864
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-50 Score=430.72 Aligned_cols=530 Identities=28% Similarity=0.299 Sum_probs=420.3
Q ss_pred HHHHhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCcc-chhH--hhcCCCCCcEEEcCCCCC
Q 008495 4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKE--DLRNLPLLTVLNVSHNKL 80 (563)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~l~~--~~~~~~~L~~L~l~~~~~ 80 (563)
.+...+.++.++++.+++..+|..+ ..+++|++|++++|.+. .+|. .++++++|++|++++|.+
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~-------------~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGF-------------KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCC-------------CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE
T ss_pred hHhccCcccccCCcCCCcCCCchhh-------------ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc
Confidence 3445566777777777765555443 33789999999999988 5777 899999999999999988
Q ss_pred CC-cchhh-hcCCCccEEEcCCCcCCCC-Cch---hcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCcc
Q 008495 81 SE-LPAAI-GELHMLKSLDVSFNSIMKI-PDE---IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154 (563)
Q Consensus 81 ~~-l~~~~-~~~~~L~~L~l~~~~l~~~-~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~ 154 (563)
.. ++..+ .++++|++|++++|.+... +.. +.++++|++|++++|.+.... .+.++++|++|++++|.+....+
T Consensus 139 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 217 (768)
T 3rgz_A 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIP 217 (768)
T ss_dssp ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCC
T ss_pred CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCCc
Confidence 73 44443 7899999999999999854 334 788999999999999987543 33789999999999999986555
Q ss_pred ccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCccc-ccCCCccc-cccc
Q 008495 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISG-CCSL 232 (563)
Q Consensus 155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~L 232 (563)
.+..+++|++|++++|.+.......+..+++|++|++++|.+....... .+++|++|++++|.+. .+|..+.. +++|
T Consensus 218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 6999999999999999999777777999999999999999986433333 7899999999999998 77877766 4999
Q ss_pred ceEEcCCCCCc-cCchhhcCCCCCcEEEccCCccc-ccccc-cc-ceeeeEEEcCCCCCCC-CCccccCCC-CCcEEEcC
Q 008495 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVE-AC-QLRLSVLDLSNNSLSG-LPPEIGKMT-TLRKLLLT 306 (563)
Q Consensus 233 ~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~-~~-~~~L~~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~ 306 (563)
++|++++|.+. .+|..++.+++|++|++++|.+. .++.. .. ..+|++|++++|.+.+ +|..+..++ +|++|+++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 99999999998 77889999999999999999997 56544 22 3459999999999984 788888877 99999999
Q ss_pred CCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCC-cCChhhhccCCccEE
Q 008495 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKL 385 (563)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L 385 (563)
+|.+.............. .+........... ..........+.+++++++++.+. .++..+..+++|+.|
T Consensus 377 ~N~l~~~~~~~~~~~~~~-------~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKN-------TLQELYLQNNGFT--GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp SSEEEEECCTTTTCSTTC-------CCCEEECCSSEEE--EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCcCCCcChhhhhcccC-------CccEEECCCCccc--cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 998763221111110000 0000000000000 001111223467889999998876 677788888999999
Q ss_pred ECCCCCCCc-CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCC
Q 008495 386 DLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (563)
Q Consensus 386 ~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (563)
++++|.+.. +|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.++
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 999998874 7788889999999999999998877777889999999999999998766667889999999999999998
Q ss_pred CCCCCCCCCCCCCCeEEcCCCccc-ccchh--------------------------------------------------
Q 008495 465 LPENPPFSSLPHLQELYLRRMQLR-EAPTD-------------------------------------------------- 493 (563)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~-------------------------------------------------- 493 (563)
...+..+..+++|+.|++++|++. .+|..
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 777888899999999999999776 44432
Q ss_pred --------------------hhccCCccEEEcCCCcCC-chhhhccCCCCCCEEECCCCCCC-cCCCCcccCcccCcEEE
Q 008495 494 --------------------ILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALR 551 (563)
Q Consensus 494 --------------------~~~~~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ 551 (563)
+..+++|+.|++++|.++ .+|..+.++++|+.|++++|+++ .+|..+..+ ++|+.||
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~Ld 686 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILD 686 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEE
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEE
Confidence 233577899999999998 67889999999999999999998 677777776 9999999
Q ss_pred cCCCCcc
Q 008495 552 LDGNPLR 558 (563)
Q Consensus 552 l~~~~~~ 558 (563)
+++|+++
T Consensus 687 Ls~N~l~ 693 (768)
T 3rgz_A 687 LSSNKLD 693 (768)
T ss_dssp CCSSCCE
T ss_pred CCCCccc
Confidence 9999986
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.7e-49 Score=413.73 Aligned_cols=527 Identities=24% Similarity=0.315 Sum_probs=275.5
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCc-chhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~ 88 (563)
.+.+||++++++++|.++. +++++|+++++.++.++. .|.++++|++|++++|.+..+ +..|.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred CCeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence 4568888888888887663 357777777776665543 466677777777777666654 44666
Q ss_pred cCCCccEEEcCCCcCCCCCc-hhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccccC-ccccccCCCccEE
Q 008495 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L 165 (563)
++++|++|++++|.+..+|. .|..+++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 67777777777776666654 4666777777777777666554 4566667777777777666643 3345666677777
Q ss_pred EecCCcccccchhhhc--cccccceEEcCCCcCCCCc-ccccCC---------------------------CcccEEecc
Q 008495 166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGSL---------------------------SRLIRLDLH 215 (563)
Q Consensus 166 ~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~l~~~~-~~l~~~---------------------------~~L~~L~l~ 215 (563)
++++|.++.+....+. .++.|+.|++++|.+..++ ..+..+ ++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 7777666655554443 3356666666666664432 222221 345555555
Q ss_pred CCccccc-CCCcccccc--cceEEcCCCCCccC-chhhcCCCCCcEEEccCCccccccccc-c-ceeeeEEEcCCCCCC-
Q 008495 216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA-C-QLRLSVLDLSNNSLS- 288 (563)
Q Consensus 216 ~~~~~~~-~~~~~~~~~--L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~-~-~~~L~~L~l~~~~~~- 288 (563)
+|.+... +..+..++. |++|++++|.+..+ +..+..+++|++|++++|.+....... . ..+|+.++++++...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 5555532 344444433 66666666666644 344666666666666666665443221 1 122555555544222
Q ss_pred -----CCCc----cccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhcccccc
Q 008495 289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (563)
Q Consensus 289 -----~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (563)
.+|. .++.+++|+++++++|.+..++...+.... .++.+ .+.............. ........+
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L--~Ls~n~~~~~~l~~~~---f~~~~~~~L 383 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI--NLKYL--SLSNSFTSLRTLTNET---FVSLAHSPL 383 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT--TCCEE--ECTTCBSCCCEECTTT---TGGGTTSCC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc--CCcEE--ECCCCchhhhhcchhh---hcccccCcC
Confidence 1121 344455555555555554443322221100 00000 0000000000000000 000011345
Q ss_pred ceeecCCCCCCcC-ChhhhccCCccEEECCCCCCCc-CC-ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 360 KELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 360 ~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
+.++++++.+..+ +..+..+++|+.|++++|.+.. ++ ..+..+++|+.|++++|++.......+..+++|++|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 5666666655543 3344455666666666666543 33 3455556666666666655555444455555555555555
Q ss_pred CCCcc--cCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccch---------hhhccCCccEEEc
Q 008495 437 NPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT---------DILRLQQLRILDL 505 (563)
Q Consensus 437 ~~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---------~~~~~~~L~~L~l 505 (563)
|.+.. ..+..+..+++|+.|++++|.++...+..+..+++|++|++++|+++.++. .+..+++|++|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 55442 122334555555555555555555444445555555555555555543311 1344555555555
Q ss_pred CCCcCCchhh-hccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 506 SQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 506 ~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
++|.++.+|. .|..+++|+.|++++|+++.+|+..+..+++|+.|++++|+++.
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 5555555543 24555555555555555555555444333555555555555443
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-47 Score=403.07 Aligned_cols=501 Identities=25% Similarity=0.301 Sum_probs=386.7
Q ss_pred ccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcch-hhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCC
Q 008495 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (563)
Q Consensus 47 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~ 124 (563)
-+.++.+++.++++|..+. +++++|++++|.+..++. .|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3678999999999987665 799999999999998865 699999999999999999865 677899999999999999
Q ss_pred CCCCCcc-cccccCCCCeEecCCCccccCc-cccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCccc
Q 008495 125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (563)
Q Consensus 125 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 202 (563)
.++.++. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+.......+..+++|++|++++|.++.++..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 9998886 6899999999999999999886 5699999999999999999988777789999999999999999876543
Q ss_pred ---ccCCCcccEEeccCCcccccC-CCcccc---------------------------cccceEEcCCCCCccC-chhhc
Q 008495 203 ---IGSLSRLIRLDLHQNRILSIP-SSISGC---------------------------CSLAEFYMGNNALSAL-PAELG 250 (563)
Q Consensus 203 ---l~~~~~L~~L~l~~~~~~~~~-~~~~~~---------------------------~~L~~L~l~~~~~~~l-~~~l~ 250 (563)
...+++|++|++++|.+..++ ..+..+ ++|+.|++++|.+... +..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 335689999999999888553 333332 5678888888887744 45666
Q ss_pred CCC--CCcEEEccCCcccccccccc--ceeeeEEEcCCCCCCC-CCccccCCCCCcEEEcCCCccc------ccc---cc
Q 008495 251 KLS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR------TLR---SS 316 (563)
Q Consensus 251 ~~~--~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~------~~~---~~ 316 (563)
.++ +|++|++++|.++.++...+ ..+|++|++++|.+.+ .+..++.+++|++++++++... .++ ..
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 664 49999999999987664332 2459999999999988 4557899999999999876432 111 00
Q ss_pred ccCCCChHHHHHhhc-cCCCCCCCccccchhhHHHhhhccccccceeecCCCCCC--cCChh-hh--ccCCccEEECCCC
Q 008495 317 LVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSE-IW--EAGEITKLDLSRN 390 (563)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~-~~--~~~~L~~L~l~~~ 390 (563)
.+.. ...+.. .+....... .........+.+++++++++.+. .++.. +. ..+.|+.+++++|
T Consensus 324 ~~~~-----l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 324 SFQW-----LKCLEHLNMEDNDIPG-------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp TTTT-----CTTCCEEECCSCCBCC-------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred hccc-----CCCCCEEECCCCccCC-------CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 1100 000000 000000000 00001122345667777666432 22221 11 1246778888888
Q ss_pred CCCcC-CccccCCCCCcEEEcccCCCCC-CChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCC--CC
Q 008495 391 SIQEL-PPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LP 466 (563)
Q Consensus 391 ~l~~l-~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~ 466 (563)
.++.+ +..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|++..+....|..+++|+.|++++|.+. ..
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 77764 4567888999999999998875 55567788999999999999988888888899999999999999876 34
Q ss_pred CCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhh---------hccCCCCCCEEECCCCCCCcC
Q 008495 467 ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 467 ~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~---------~l~~l~~L~~L~l~~n~l~~~ 536 (563)
.+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.++.++. .+..+++|+.|++++|+++.+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 567789999999999999999977654 7889999999999999986632 278899999999999999999
Q ss_pred CCCcccCcccCcEEEcCCCCccccc
Q 008495 537 PPELGLLEPSLQALRLDGNPLRRYG 561 (563)
Q Consensus 537 ~~~~~~~~~~L~~L~l~~~~~~~~~ 561 (563)
|...+..+++|+.|++++|.++.+.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCC
Confidence 9876665699999999999987654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.4e-48 Score=401.21 Aligned_cols=478 Identities=21% Similarity=0.222 Sum_probs=402.5
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCc-chh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (563)
+++++|+++++.++.++...+.. +++|++|++++|.++.+ |..|.++++|++|++++|.+..+ |..
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 67899999999999988877655 78899999999999977 56899999999999999999987 778
Q ss_pred hhcCCCccEEEcCCCcCCCCC-chhcccCCccEEEccCCCCC--CCcccccccCCCCeEecCCCccccCc-cccccCCCc
Q 008495 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L 162 (563)
|.++++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999999999998775 67999999999999999998 46889999999999999999988654 345555554
Q ss_pred ----cEEEecCCcccccchhhhccccccceEEcCCCcCC--CCcccccCCCcccEEec----------------------
Q 008495 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL---------------------- 214 (563)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~l~~~~~L~~L~l---------------------- 214 (563)
.+|++++|.+..++...+... +|+.|++++|.+. .++..+..++.|+.+++
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 489999999998888766655 8999999999774 34445555555555544
Q ss_pred -----------cCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcC
Q 008495 215 -----------HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (563)
Q Consensus 215 -----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 283 (563)
..+.+......+..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++.. ...+|++|+++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLT 336 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeecc
Confidence 33444433233788999999999999999888 788999999999999999888854 55569999999
Q ss_pred CCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceee
Q 008495 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (563)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (563)
+|..... ..++.+++|+++++++|.++..+.. .......+.+++++
T Consensus 337 ~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 337 MNKGSIS-FKKVALPSLSYLDLSRNALSFSGCC---------------------------------SYSDLGTNSLRHLD 382 (606)
T ss_dssp SCSSCEE-CCCCCCTTCCEEECCSSCEEEEEEC---------------------------------CHHHHCCSCCCEEE
T ss_pred CCcCccc-hhhccCCCCCEEECcCCccCCCcch---------------------------------hhhhccCCcccEeE
Confidence 9954442 2567899999999999987644200 00112246789999
Q ss_pred cCCCCCCcCChhhhccCCccEEECCCCCCCcCC--ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcc
Q 008495 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (563)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 441 (563)
++++.+..++..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 999999888888889999999999999988764 368899999999999999998888888999999999999999987
Q ss_pred -cCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchhhhccC
Q 008495 442 -VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKN 519 (563)
Q Consensus 442 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~~~l~~ 519 (563)
..+..+..+++|++|++++|.++...+..+..+++|++|++++|++..+ |..+..+++|++|++++|.++.+|..+..
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~ 542 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence 3456689999999999999999988888899999999999999999976 77889999999999999999999988888
Q ss_pred CC-CCCEEECCCCCCCc
Q 008495 520 LT-SLTELDLSDNNISA 535 (563)
Q Consensus 520 l~-~L~~L~l~~n~l~~ 535 (563)
++ +|+.|++++|++..
T Consensus 543 l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCTTCCEEECCSCCCCC
T ss_pred hcccCcEEEccCCCccc
Confidence 87 69999999998863
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-46 Score=389.84 Aligned_cols=477 Identities=22% Similarity=0.257 Sum_probs=394.6
Q ss_pred ccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCc-chhhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCC
Q 008495 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (563)
Q Consensus 47 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~ 124 (563)
-+.++.++..++++|..+.. ++++|++++|.++.+ +..|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 45788999999999987765 799999999999987 55899999999999999999855 778999999999999999
Q ss_pred CCCCC-cccccccCCCCeEecCCCccccC-ccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCC-cc
Q 008495 125 QLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PE 201 (563)
Q Consensus 125 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~ 201 (563)
.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99865 67899999999999999999987 46799999999999999999987655577799999999999999876 55
Q ss_pred cccCCCccc--EEeccCCcccccCCCcccccccceEEcCCCCCc--------------------------cC-chhhcCC
Q 008495 202 TIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGKL 252 (563)
Q Consensus 202 ~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------------~l-~~~l~~~ 252 (563)
.+..+++|+ .|++++|.+..++........|+.|+++++... .+ +..+..+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 688889999 899999999977666666678999999887511 00 0111111
Q ss_pred --CCCcEEEccCCccccccccccc--eeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHH
Q 008495 253 --SKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (563)
Q Consensus 253 --~~L~~L~l~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
.+|+.+++++|.++.++...+. .+|++|++++|.++.+|..++.+++|++|++++|.+..++...+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~---------- 321 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA---------- 321 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG----------
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh----------
Confidence 1678888888888876654322 34888888888888888888888888888888887765432211
Q ss_pred hhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCC-cCCh-hhhccCCccEEECCCCCCCcC---CccccCCC
Q 008495 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPS-EIWEAGEITKLDLSRNSIQEL---PPELSSCA 403 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~l~~l---~~~l~~~~ 403 (563)
...+.+++++++++.+. .++. .+..+++|++|++++|.++.+ +..+..++
T Consensus 322 -------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 322 -------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp -------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred -------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 22367899999999776 4444 477889999999999998875 56688999
Q ss_pred CCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccC-CcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEc
Q 008495 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (563)
Q Consensus 404 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 482 (563)
+|+.|++++|++.+..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 9999999999998887778899999999999999998754 344889999999999999999888888999999999999
Q ss_pred CCCccccc----chhhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCc
Q 008495 483 RRMQLREA----PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (563)
Q Consensus 483 ~~~~l~~~----~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (563)
++|++... +..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++..++..+...++| .|++++|++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 99998742 24688899999999999999976 6779999999999999999997665554444899 999999998
Q ss_pred cccc
Q 008495 558 RRYG 561 (563)
Q Consensus 558 ~~~~ 561 (563)
+...
T Consensus 536 ~~~~ 539 (606)
T 3t6q_A 536 SIIL 539 (606)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-47 Score=392.04 Aligned_cols=493 Identities=21% Similarity=0.243 Sum_probs=356.0
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcc-hhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (563)
...++|++.+++++|..+. ++++.|++++|.++.++ ..|..+++|++|++++|.+..++ ..|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 4579999999999998763 56999999999999775 47999999999999999999875 4789
Q ss_pred cCCCccEEEcCCCcCCCCC-chhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCCcccc--CccccccCCCccE
Q 008495 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~ 164 (563)
++++|++|++++|.+..++ ..|..+++|++|++++|.++.++. .+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998664 679999999999999999998764 68899999999999999885 6888999999999
Q ss_pred EEecCCcccccchhhhcccccc----ceEEcCCCcCCCCcccccCCCcccEEeccCCccc--ccCCCcccccccceEEcC
Q 008495 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMG 238 (563)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~ 238 (563)
|++++|.+..+....+..++.| +.+++++|.+..++.......+|+.|++++|... .++..+..+++++...+.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998887778888888 8999999999876554444458999999987432 223333344444433332
Q ss_pred CCCC------ccCc-hhhcCCC--CCcEEEccCC-ccccc-ccccc-ceeeeEEEcCCCCCCCCCccccCCCCCcEEEcC
Q 008495 239 NNAL------SALP-AELGKLS--KLGTLDLHSN-QLKEY-CVEAC-QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (563)
Q Consensus 239 ~~~~------~~l~-~~l~~~~--~L~~L~l~~~-~l~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 306 (563)
...+ ..++ ..+..+. .++.+++.++ .+... +.... ..+++++++++|.+..++..+..+ +|++++++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence 1111 1110 0111111 2333333333 22211 11111 122555555555555555555555 55555555
Q ss_pred CCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEE
Q 008495 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (563)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (563)
+|.+..++.. ..+.++.+++.++........ ..+++|++|+
T Consensus 313 ~n~~~~l~~~--------------------------------------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 313 NCKFGQFPTL--------------------------------------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp SCBCSSCCBC--------------------------------------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred cCcccccCcc--------------------------------------cccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 5554433211 113445555555544432222 5677888888
Q ss_pred CCCCCCCcC---CccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCC-cccCCCCcccEEeCCCcc
Q 008495 387 LSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462 (563)
Q Consensus 387 l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~~~~L~~L~l~~n~ 462 (563)
+++|.++.. +..+..+++|+.|++++|.+.+.+.. +..+++|++|++++|.+..... ..+..+++|++|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 888887764 45577788888888888887776655 6778888888888888777543 457788888888888888
Q ss_pred CCCCCCCCCCCCCCCCeEEcCCCccc--ccchhhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCCcCCCC
Q 008495 463 ASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE 539 (563)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~ 539 (563)
+....+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++.+++.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 87777777888888888888888876 4677788888888888888888866 66788888888888888888887776
Q ss_pred cccCcccCcEEEcCCCCccc
Q 008495 540 LGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 540 ~~~~~~~L~~L~l~~~~~~~ 559 (563)
.+..+++|+.|++++|+++.
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 55445888888888888753
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-45 Score=375.01 Aligned_cols=484 Identities=19% Similarity=0.243 Sum_probs=385.3
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCcc-h
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-A 85 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~ 85 (563)
|....+.|+++++++++|.+++ +++++|++++|.++.+ +..|..+++|++|++++|.+..++ .
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred CCCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3445668999999999999774 5699999999999977 468999999999999999999775 5
Q ss_pred hhhcCCCccEEEcCCCcCCCCCch-hcccCCccEEEccCCCCCC--CcccccccCCCCeEecCCCc-cccCc-cccccCC
Q 008495 86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCS 160 (563)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~i~-~~l~~~~ 160 (563)
.|.++++|++|++++|.+..++.. +..+++|++|++++|.++. .+..+.++++|++|++++|. +..++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 899999999999999999977665 8999999999999999985 45678899999999999997 55665 4689999
Q ss_pred CccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc-cCCCcccEEeccCCcccccC----CCcccccccceE
Q 008495 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEF 235 (563)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L 235 (563)
+|++|++++|.+.......+..+++|++|++++|.+..++..+ ..+++|++|++++|.+...+ .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999998877777888999999999999887766544 45788999999999887642 223457788888
Q ss_pred EcCCCCCc-----cCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCcc
Q 008495 236 YMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310 (563)
Q Consensus 236 ~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 310 (563)
+++++.+. .++..+..+++|+.+++++|.+..+..... .....+..+++++.+++.++.+
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------SESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------CTTTCCCCCTTCCEEEEESCBC
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------cchhhhhhhccccccccccccc
Confidence 88888766 223345667788888888877654321100 0112345677888888877765
Q ss_pred ccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhh-ccCCccEEECCC
Q 008495 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSR 389 (563)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~ 389 (563)
..... .... .........++.++++++.+..++..++ .+++|++|++++
T Consensus 294 ~~~~~---~~~l---------------------------~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 294 PQFYL---FYDL---------------------------STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp SCGGG---SCCC---------------------------CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred chhhh---cccc---------------------------hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 32210 0000 0011223577899999999988988874 699999999999
Q ss_pred CCCCc-C---CccccCCCCCcEEEcccCCCCCCCh--HHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccC
Q 008495 390 NSIQE-L---PPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (563)
Q Consensus 390 ~~l~~-l---~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l 463 (563)
|.+.+ + +..+..+++|+.|++++|++++++. ..+..+++|++|++++|++..++.. +..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCc
Confidence 99876 3 2346789999999999999988754 5678999999999999999988754 78899999999999998
Q ss_pred CCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCCCcccC
Q 008495 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL 543 (563)
Q Consensus 464 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 543 (563)
+..... ..++|+.|++++|+++.++ ..+++|++|++++|.++.+|. ...+++|+.|++++|+++.+++..+..
T Consensus 423 ~~l~~~---~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 423 RVVKTC---IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp SCCCTT---SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred ccccch---hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 765432 2378999999999998764 478999999999999999987 467899999999999999988875554
Q ss_pred cccCcEEEcCCCCccc
Q 008495 544 EPSLQALRLDGNPLRR 559 (563)
Q Consensus 544 ~~~L~~L~l~~~~~~~ 559 (563)
+++|+.|++++|+++.
T Consensus 496 l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CcccCEEEecCCCccC
Confidence 5999999999999854
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=392.47 Aligned_cols=486 Identities=23% Similarity=0.263 Sum_probs=391.1
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCC-CCc-chhhh
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKL-SEL-PAAIG 88 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~-~~l-~~~~~ 88 (563)
+..||++++++.+|. + .+++++|++++|.++.+ +..|.++++|++|++++|.. ..+ +..|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 578999999999998 4 46799999999999976 56899999999999999954 466 66899
Q ss_pred cCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCC-Cccc--ccccCCCCeEecCCCccccCc--cccccCCCc
Q 008495 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM 162 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L 162 (563)
++++|++|++++|.+..+ |..|.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..++ ..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999999865 7889999999999999999985 4443 889999999999999998653 569999999
Q ss_pred cEEEecCCcccccchhhhccc--cccceEEcCCCcCCC-CcccccCCCc------ccEEeccCCccc-ccCCCc------
Q 008495 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRIL-SIPSSI------ 226 (563)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~~-~~~~l~~~~~------L~~L~l~~~~~~-~~~~~~------ 226 (563)
++|++++|.+..+....+..+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+. ..+..+
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999999999988777667777 889999999998854 4444444444 999999998654 111111
Q ss_pred ------------------------------cc--ccccceEEcCCCCCccC-chhhcCCCCCcEEEccCCccccccccc-
Q 008495 227 ------------------------------SG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA- 272 (563)
Q Consensus 227 ------------------------------~~--~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~- 272 (563)
.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 11 26788899998888754 556788899999999999888765432
Q ss_pred c-ceeeeEEEcCCCCCCCC-CccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHH
Q 008495 273 C-QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (563)
Q Consensus 273 ~-~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (563)
. ..+|++|++++|.++.+ +..++.+++|++|++++|.+..++...+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------ 360 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------ 360 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence 2 23499999999988875 567888899999999998886665433322
Q ss_pred hhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCCh-HHhhcCCCC
Q 008495 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSL 429 (563)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 429 (563)
.+.+++++++++.+..++. +++|+.+++++|.++.+|.. ..+++.+++++|.+.+... ..+..+++|
T Consensus 361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 3578899999998876653 77899999999998887753 5678999999999988654 335689999
Q ss_pred CEEEcCCCCCcccCCc-ccCCCCcccEEeCCCccCCCC-----CCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccE
Q 008495 430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLP-----ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRI 502 (563)
Q Consensus 430 ~~L~L~~~~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~ 502 (563)
++|++++|.+...+.. .+..+++|+.|++++|.++.. .+..+..+++|+.|++++|+++.++.. +..+++|++
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999999875432 466789999999999988633 345678899999999999999876554 688999999
Q ss_pred EEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 503 L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
|++++|.++.+|...-. ++|+.|++++|+++.+++..+ .+|+.+++++|++..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 99999999988654322 899999999999998777553 579999999998754
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-44 Score=368.52 Aligned_cols=475 Identities=23% Similarity=0.281 Sum_probs=362.9
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcc-hh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~ 86 (563)
..+++|+++++.++.++...+.. +++|++|++++|.+..++ +.|.++++|++|++++|.+..++ ..
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 46899999999999888766554 788999999999999875 57999999999999999999875 58
Q ss_pred hhcCCCccEEEcCCCcCCCCCc-hhcccCCccEEEccCCCCCC--CcccccccCCCCeEecCCCccccCc-cccccCCCc
Q 008495 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L 162 (563)
|.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999999998765 68999999999999999985 6889999999999999999998664 567788888
Q ss_pred ----cEEEecCCcccccchhhhccccccceEEcCCCcCC--CCcccccCCCcccEEeccCCcc------cccC-CCcccc
Q 008495 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRI------LSIP-SSISGC 229 (563)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~l~~~~~L~~L~l~~~~~------~~~~-~~~~~~ 229 (563)
+.|++++|.+..+....+... .|+.+++++|... .++..+..++.++...+....+ ..++ ..+..+
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999999998888767665 7999999987542 2344445555555444332111 1111 112222
Q ss_pred c--ccceEEcCCC-CCc-cCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEc
Q 008495 230 C--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (563)
Q Consensus 230 ~--~L~~L~l~~~-~~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 305 (563)
+ .++.++++++ .+. ..+..+..+++|++|+++++.+..++......+|++|++++|.+..++. ..+++|+++++
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeC
Confidence 2 2334444443 222 3344555566666666666666555544444456666666666665544 35566666666
Q ss_pred CCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcC---ChhhhccCCc
Q 008495 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEI 382 (563)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L 382 (563)
++|.+...... ...+.+++++++++.+... +..+..+++|
T Consensus 333 ~~n~~~~~~~~-------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 333 TSNKGGNAFSE-------------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp ESCBSCCBCCC-------------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred cCCcccccccc-------------------------------------ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 66654221100 1224556666666665543 4667788999
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCCh-HHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
++|++++|.+..++..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+.......+..+++|++|++++|
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 99999999998887778999999999999999887654 45788999999999999999887777999999999999999
Q ss_pred cCC-CCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchh-hhccCCCCCCEEECCCCCCCc
Q 008495 462 IAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA 535 (563)
Q Consensus 462 ~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~n~l~~ 535 (563)
.++ ...+..+..+++|+.|++++|+++.+ +..+..+++|++|++++|.++.+| ..+..+++|+.|++++|++..
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 987 34567889999999999999999976 778889999999999999999875 458999999999999999884
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=358.86 Aligned_cols=452 Identities=20% Similarity=0.234 Sum_probs=244.0
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCc-chhhhc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (563)
+++|+++++++++|.++. +++++|++++|.+..++ +.|..+++|++|++++|.+..+ |..|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 578899999888887663 46889999999888665 6788889999999999888876 568888
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCC--CcccccccCCCCeEecCCCccccCccccccCCCc--cEE
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L--~~L 165 (563)
+++|++|++++|.++.+|.. .+++|++|++++|.++. +|..+.++++|++|++++|.+.. ..+..+++| ++|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 88888888888888877665 78888888888888875 45677778888888888877764 345666666 777
Q ss_pred EecCCcc--cccchhhhcccc-ccceEEcCCCcCCC-C-cccccCCCcccEEeccCCcccccCCCcccccccceEEcCCC
Q 008495 166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (563)
Q Consensus 166 ~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~l~~-~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (563)
++++|.+ .......+..+. ....+++++|.+.. + +..+..+++|+.+++++|.......
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------- 207 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---------------- 207 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----------------
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc----------------
Confidence 7777766 333333333332 12233444444421 1 1234445555555555543000000
Q ss_pred CCccCchhhcCCCCCcEEEccCCccccc-----cccccceeeeEEEcCCCCCCC-CCccc-----cCCCCCcEEEcCCCc
Q 008495 241 ALSALPAELGKLSKLGTLDLHSNQLKEY-----CVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNP 309 (563)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~-~~~~~-----~~~~~L~~L~l~~~~ 309 (563)
.+....+.+..+++|+.|++.++.+... .......+|++|++++|.+.+ +|..+ +.+++|+.++++++.
T Consensus 208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 0111112344455555555555444321 111111245555555555552 55554 666777777776665
Q ss_pred cccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCC
Q 008495 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (563)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (563)
+ .++...+ .. . .....++.++++++.+...+. ...+++|++|++++
T Consensus 288 ~-~~p~~~~--------~~----------------------~--~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 288 F-GFPQSYI--------YE----------------------I--FSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN 333 (520)
T ss_dssp C-CSCTHHH--------HH----------------------H--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred e-ecchhhh--------hc----------------------c--cccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence 4 2210000 00 0 000123333343333332210 12344555555555
Q ss_pred CCCCc-CCccccCCCCCcEEEcccCCCCCCCh--HHhhcCCCCCEEEcCCCCCcc-cCCcccCCCCcccEEeCCCccCCC
Q 008495 390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASL 465 (563)
Q Consensus 390 ~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~l~~n~l~~ 465 (563)
|.+++ +|..+..+++|+.|++++|++++++. ..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|.++.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 55544 34444555555555555555554222 234455555555555555554 443334444555555555554433
Q ss_pred CCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCCCCC
Q 008495 466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 466 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l~ 534 (563)
..+..+. ++|+.|++++|+++.+|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred chhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 2222211 344445554444444444444444444444444444444433 444444444444444443
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-42 Score=359.94 Aligned_cols=494 Identities=22% Similarity=0.245 Sum_probs=379.7
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcch-hhhc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (563)
.+.+|+++++++||.++. +++++|+|++|.|+.++ .+|.++++|++|+|++|.++.++. +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 467999999999999883 57999999999999987 479999999999999999998865 7999
Q ss_pred CCCccEEEcCCCcCCCCCc-hhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCCcccc--CccccccCCCccEE
Q 008495 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L 165 (563)
+++|++|+|++|+++.+|. .|.++++|++|++++|.++.++. .+.++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998864 58999999999999999998874 58999999999999999874 56788999999999
Q ss_pred EecCCcccccchhhhccccccc----eEEcCCCcCCCCcccccCCCcccEEeccCCccc--ccCCCcccccccceEEc--
Q 008495 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM-- 237 (563)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l-- 237 (563)
++++|.+..+....+..+..++ .++++.|.+..++........+..+++.++... ..+..+..+..++...+
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999999988777777666544 578888888777665555566777777776432 11122223333333222
Q ss_pred ----------------------------CCCCCc----cCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCC
Q 008495 238 ----------------------------GNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (563)
Q Consensus 238 ----------------------------~~~~~~----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 285 (563)
..+... .....+....+++.+.+.++.+..+........++.+++.++
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 211111 112233444566666666666555544444445666666666
Q ss_pred CCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecC
Q 008495 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (563)
Q Consensus 286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (563)
.+..++. ..+..++.+++..+........ ...+.++.++++
T Consensus 339 ~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~-------------------------------------~~l~~L~~L~ls 379 (635)
T 4g8a_A 339 KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDLS 379 (635)
T ss_dssp EESSCCC--CBCTTCCEEEEESCCSCCBCCC-------------------------------------CBCTTCCEEECC
T ss_pred cccCcCc--ccchhhhhcccccccCCCCccc-------------------------------------ccccccccchhh
Confidence 6555432 2345566666665544322110 112467788888
Q ss_pred CCCCC---cCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCC-CChHHhhcCCCCCEEEcCCCCCcc
Q 008495 366 GMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441 (563)
Q Consensus 366 ~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~l~~ 441 (563)
++.+. ..+.......+++.+++..+....++..+..+++|+.+++.++.... .....+..+++++.+++++|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 87765 34566777889999999999888777788899999999999886554 334557889999999999999999
Q ss_pred cCCcccCCCCcccEEeCCCccC-CCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchh-hhcc
Q 008495 442 VPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFK 518 (563)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~l~ 518 (563)
.....+..+++|+.|++++|.+ ....+..+..+++|++|++++|+++.+ +..+.++++|++|++++|+++.++ ..+.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 8888899999999999999874 445567789999999999999999976 566889999999999999999885 5689
Q ss_pred CCCCCCEEECCCCCCCcCCCCcc-cCcccCcEEEcCCCCccc
Q 008495 519 NLTSLTELDLSDNNISALPPELG-LLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 519 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~~~~~~ 559 (563)
.+++|+.|++++|+++.+++..+ .++++|+.|++++|++..
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999999999998877654 444789999999999864
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=354.71 Aligned_cols=423 Identities=22% Similarity=0.205 Sum_probs=338.7
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCcchhh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~ 87 (563)
.++++|+++++.++.++.+.+.. +++|++|++++|.++.+ |+.|..+++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 67899999999999998877665 78899999999999977 67999999999999999999998876
Q ss_pred hcCCCccEEEcCCCcCCC--CCchhcccCCccEEEccCCCCCCCcccccccCCC--CeEecCCCcc--c-cCccccccCC
Q 008495 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (563)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~i~~~l~~~~ 160 (563)
.+++|++|++++|.+.. +|..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..+..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 57899999999999999999875 457778888 9999999988 3 4455565554
Q ss_pred -CccEEEecCCccc-ccchhhhccccccceEEcCCCc-------CCCCcccccCCCcccEEeccCCcccc-----cCCCc
Q 008495 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (563)
Q Consensus 161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~ 226 (563)
+...+++++|.+. .+....+..++.|+.+++++|. +......+..+++|+.|+++++.+.. ++..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~- 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL- 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-
Confidence 2345667777655 4555567889999999999986 33333367888999999999887662 1111
Q ss_pred ccccccceEEcCCCCCc-cCchhh-----cCCCCCcEEEccCCccccccccc-----cceeeeEEEcCCCCCCCCCcccc
Q 008495 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSLSGLPPEIG 295 (563)
Q Consensus 227 ~~~~~L~~L~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~l~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~ 295 (563)
...++|++|++++|.+. .+|..+ ..+++|+.++++++.+ .++... ...+++.|++++|.+...+. ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 12458999999999888 778777 8888999999988887 444211 11348888888887766432 25
Q ss_pred CCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChh
Q 008495 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (563)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 375 (563)
.+++|++|++++|.+.. .++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~ 343 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN 343 (520)
T ss_dssp SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence 67788888888876632 13345
Q ss_pred hhccCCccEEECCCCCCCc---CCccccCCCCCcEEEcccCCCCC-CChHHhhcCCCCCEEEcCCCCCcccCCcccCCCC
Q 008495 376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (563)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 451 (563)
+..+++|++|++++|.++. +|..+..+++|+.|++++|.+++ ++...+..+++|++|++++|.+.+.....+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 5678899999999999986 44568899999999999999998 6666678899999999999998764433232 7
Q ss_pred cccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCC
Q 008495 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
+|++|++++|.++.. +..+..+++|++|++++|+++.+|.. +..+++|++|++++|.+.
T Consensus 422 ~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 999999999999854 44556899999999999999999887 888999999999999987
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=370.99 Aligned_cols=469 Identities=25% Similarity=0.279 Sum_probs=380.9
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCC-ccch-hHhhcCCCCCcEEEcCCCCCCCc-c
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSEL-P 84 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-i~~l-~~~~~~~~~L~~L~l~~~~~~~l-~ 84 (563)
..++++||++++.++.++...+.. +++|++|++++|. +..+ +..|+++++|++|++++|.+..+ |
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~------------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF------------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS------------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCcCEEECCCCcCCccChhHCcc------------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 367899999999999887666554 7889999999994 4566 67899999999999999999976 7
Q ss_pred hhhhcCCCccEEEcCCCcCCC-CCch--hcccCCccEEEccCCCCCCCc--ccccccCCCCeEecCCCccccC-cccccc
Q 008495 85 AAIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLAD 158 (563)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i-~~~l~~ 158 (563)
..|.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 789999999999999999874 4544 889999999999999998653 5788999999999999988754 455666
Q ss_pred C--CCccEEEecCCcccccchhhhccccc------cceEEcCCCcCCC-Cccc---------------------------
Q 008495 159 C--SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET--------------------------- 202 (563)
Q Consensus 159 ~--~~L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~l~~-~~~~--------------------------- 202 (563)
+ ++|+.|++++|.+.......+..+.. |+.|++++|.+.. ++..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6 88999999999887654443444444 8999999886532 1111
Q ss_pred ---------ccC--CCcccEEeccCCccccc-CCCcccccccceEEcCCCCCccC-chhhcCCCCCcEEEccCCcccccc
Q 008495 203 ---------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269 (563)
Q Consensus 203 ---------l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~ 269 (563)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 111 26899999999998855 56788999999999999999965 557899999999999999998764
Q ss_pred cc-ccc-eeeeEEEcCCCCCCCCCc-cccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchh
Q 008495 270 VE-ACQ-LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346 (563)
Q Consensus 270 ~~-~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (563)
.. ... .+|+.|++++|.+..++. .+..+++|++|++++|.++.++.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------------------------------- 379 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------------------------------- 379 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------------------------------
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------------------------------
Confidence 33 333 349999999999988655 58889999999999998865431
Q ss_pred hHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc--cccCCCCCcEEEcccCCCCCCChH-Hh
Q 008495 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-IL 423 (563)
Q Consensus 347 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~-~~ 423 (563)
.+.++.+.++++.+..++.. ...++.+++++|.++.++. .+..+++|+.|++++|+++..... .+
T Consensus 380 ---------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 380 ---------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp ---------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ---------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 35678999999999877653 5678999999999988654 255899999999999999875432 34
Q ss_pred hcCCCCCEEEcCCCCCccc-----CCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccC
Q 008495 424 TSLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ 498 (563)
Q Consensus 424 ~~~~~L~~L~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 498 (563)
..+++|++|++++|.+... ....|..+++|+.|++++|.++...+..+..+++|+.|++++|+++.++..... +
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~ 526 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-A 526 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-S
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-c
Confidence 6689999999999998743 334588899999999999999999888899999999999999999987765444 8
Q ss_pred CccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCC
Q 008495 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 499 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~ 534 (563)
+|+.|++++|.+++++.. .+.+|+.|++++|++.
T Consensus 527 ~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred cccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence 999999999999976432 2468999999998764
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-42 Score=359.47 Aligned_cols=416 Identities=19% Similarity=0.260 Sum_probs=273.2
Q ss_pred ccccEEEccCCCcc-chhHhhcCCCCCcEEEcCCCCCC-------------Ccchh---------------------hh-
Q 008495 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAA---------------------IG- 88 (563)
Q Consensus 45 ~~l~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~~~-------------~l~~~---------------------~~- 88 (563)
.+++.|+|+++.+. .+|..++++++|++|++++|.+. .+|.. +.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999988 78889999999999999998641 11110 00
Q ss_pred ------------------cCCCccEEEcC--CCcCCCCCchhcccCCccEEEccCCCCCC------------------Cc
Q 008495 89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (563)
Q Consensus 89 ------------------~~~~L~~L~l~--~~~l~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (563)
....++.+.+. .|.++.+|..+.++++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00111222221 34555677778888888888888888876 77
Q ss_pred cccc--ccCCCCeEecCCCccc-cCccccccCCCccEEEecCCc-ccc-cchhhhccc------cccceEEcCCCcCCCC
Q 008495 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------TMLTELIASKNLLNGM 199 (563)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~~~l~~~ 199 (563)
..+. ++++|++|++++|.+. .+|..+..+++|++|++++|. ++. ..+..+..+ ++|++|++++|.++.+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 7777 8888888888888755 567778888888888888887 664 222235444 7788888888887777
Q ss_pred cc--cccCCCcccEEeccCCccc-ccCCCcccccccceEEcCCCCCccCchhhcCCCC-CcEEEccCCccccccccccce
Q 008495 200 PE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (563)
Q Consensus 200 ~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~ 275 (563)
|. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.++.++
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp------ 393 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP------ 393 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC------
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc------
Confidence 77 7777788888888888777 676 777777777777777777777777777777 777777766655433
Q ss_pred eeeEEEcCCCCCCCCCccccCC--CCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhh
Q 008495 276 RLSVLDLSNNSLSGLPPEIGKM--TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353 (563)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (563)
..+... ++|+++++++|.+.......+.
T Consensus 394 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---------------------------------- 423 (636)
T 4eco_A 394 ----------------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFD---------------------------------- 423 (636)
T ss_dssp ----------------SCCCTTCSSCEEEEECCSSCTTTTTTCSSC----------------------------------
T ss_pred ----------------hhhhhcccCccCEEECcCCcCCCcchhhhc----------------------------------
Confidence 333332 2556666665554321100000
Q ss_pred ccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcc-ccCCCCCcEEEcccCCCCCCChHHhhcCC-----
Q 008495 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS----- 427 (563)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----- 427 (563)
..........+|+.|++++|.++.+|.. +..+++|+.|++++|+++.++...+....
T Consensus 424 -----------------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 424 -----------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp -----------------TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred -----------------ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 0000111344667777777777766654 34567777777777777766654444332
Q ss_pred --CCCEEEcCCCCCcccCCccc-CCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCC------Ccc-cccchhhhcc
Q 008495 428 --SLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR------MQL-REAPTDILRL 497 (563)
Q Consensus 428 --~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------~~l-~~~~~~~~~~ 497 (563)
+|++|++++|.+..++...+ ..+++|+.|++++|.++. .+..+..+++|+.|++++ |++ ..+|..+..+
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 77777777777776664422 367777777777777766 455666777777777743 332 3566667777
Q ss_pred CCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCC
Q 008495 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537 (563)
Q Consensus 498 ~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~ 537 (563)
++|++|++++|.++.+|..+. ++|+.|++++|++..+.
T Consensus 566 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 566 PSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 777777777777776766544 67777777777666443
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-42 Score=353.31 Aligned_cols=450 Identities=20% Similarity=0.242 Sum_probs=351.8
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcch-h
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~ 86 (563)
+.+++|+++++.++.++...+.. +++|++|++++|.+..++ +.|..+++|++|++++|.+..++. .
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA------------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCccEEECcCCccCccChhhhhc------------CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 57999999999999887655544 788999999999999775 689999999999999999998866 5
Q ss_pred hhcCCCccEEEcCCCcCCC--CCchhcccCCccEEEccCCC-CCCCc-ccccccCCCCeEecCCCcccc-CccccccCCC
Q 008495 87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~ 161 (563)
|.++++|++|++++|.+.. .+..+..+++|++|++++|. +..++ ..+.++++|++|++++|.+.. .+..+..+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999999999999999984 46789999999999999998 56665 578899999999999999984 6778999999
Q ss_pred ccEEEecCCcccccchhhhccccccceEEcCCCcCCCCc----ccccCCCcccEEeccCCccc-----ccCCCccccccc
Q 008495 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL 232 (563)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~----~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L 232 (563)
|++|+++++.+..++...+..+++|+.|++++|.+..++ .....+++|+.|+++++.+. .++..+..+++|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 999999999988887776778999999999999997652 22345788999999999876 344456778899
Q ss_pred ceEEcCCCCCccCc-------hhhcCCCCCcEEEccCCcccccccc-------ccceeeeEEEcCCCCCCCCCccc-cCC
Q 008495 233 AEFYMGNNALSALP-------AELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGLPPEI-GKM 297 (563)
Q Consensus 233 ~~L~l~~~~~~~l~-------~~l~~~~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~-~~~ 297 (563)
+.+++++|.+..++ ..+..+.+++.+++.++.+...... ....+++.+++++|.+..+|..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 99999999776432 2356778999999998877643211 11234889999999888888776 578
Q ss_pred CCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhh
Q 008495 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377 (563)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 377 (563)
++|++|++++|.+...... .+..+.
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~-------------------------------------------------------~~~~~~ 358 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLK-------------------------------------------------------NSACKG 358 (549)
T ss_dssp TTCCEEECCSSCCCHHHHH-------------------------------------------------------HHTCTT
T ss_pred ccccEEEccCCcccccccc-------------------------------------------------------chhhhh
Confidence 8999999998876421000 001134
Q ss_pred ccCCccEEECCCCCCCcCC---ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCccc
Q 008495 378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (563)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 454 (563)
.+++|+.|++++|.++.++ ..+..+++|+.|++++|+++.++.. +..+++|++|++++|.+..++... .++|+
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~ 434 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQTLE 434 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTTCS
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCCce
Confidence 4567777777777777654 2366777788888888877765543 466778888888888877665432 25788
Q ss_pred EEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchh-hhccCCCCCCEEECCCCCC
Q 008495 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNI 533 (563)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~n~l 533 (563)
+|++++|.++.. ...+++|++|++++|+++.+|. ...+++|+.|++++|.++.+| ..+..+++|+.|++++|++
T Consensus 435 ~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 435 VLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 888888877664 2567888888888888887775 456788888888888888764 4478888888888888876
Q ss_pred C
Q 008495 534 S 534 (563)
Q Consensus 534 ~ 534 (563)
.
T Consensus 510 ~ 510 (549)
T 2z81_A 510 D 510 (549)
T ss_dssp C
T ss_pred c
Confidence 5
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-41 Score=358.79 Aligned_cols=415 Identities=21% Similarity=0.258 Sum_probs=255.5
Q ss_pred ccccEEEccCCCcc-chhHhhcCCCCCcEEEc-CCCCCCCc-c-------------------------------------
Q 008495 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P------------------------------------- 84 (563)
Q Consensus 45 ~~l~~L~l~~~~i~-~l~~~~~~~~~L~~L~l-~~~~~~~l-~------------------------------------- 84 (563)
..++.|+|+++.+. .+|..++++++|+.|+| ++|.+... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46899999999988 78889999999999999 66643210 0
Q ss_pred ---hhh-----------hcCCCccEEEcCC--CcCCCCCchhcccCCccEEEccCCCCCC------------------Cc
Q 008495 85 ---AAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (563)
Q Consensus 85 ---~~~-----------~~~~~L~~L~l~~--~~l~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~ 130 (563)
..+ .....++.+.+.. |.++.+|..+.++++|++|++++|.++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 000 0111222222322 4555578888888888888888888887 77
Q ss_pred cccc--ccCCCCeEecCCCccc-cCccccccCCCccEEEecCCc-ccc-cchhhhcccc-------ccceEEcCCCcCCC
Q 008495 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASWT-------MLTELIASKNLLNG 198 (563)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~-------~L~~L~l~~~~l~~ 198 (563)
..+. ++++|++|++++|.+. .+|..+..+++|++|++++|+ ++. ..+..+..++ +|+.|++++|.+..
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ 562 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence 7766 8888888888888754 677778888888888888887 664 2222244444 78888888888777
Q ss_pred Ccc--cccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCC-CcEEEccCCccccccccccce
Q 008495 199 MPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (563)
Q Consensus 199 ~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~ 275 (563)
+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++......
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 777 7777788888888888777776 777777788888888777777777777777 777777777766554332221
Q ss_pred ---eeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhh
Q 008495 276 ---RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (563)
Q Consensus 276 ---~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (563)
+|+.|++++|.+.+..+.+..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~-------------------------------------------------------- 665 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISC-------------------------------------------------------- 665 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSS--------------------------------------------------------
T ss_pred ccCCCCEEECcCCcCCCccccchh--------------------------------------------------------
Confidence 145555555444432111110
Q ss_pred hccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcccc-CCCCCcEEEcccCCCCCCChHHhh-------
Q 008495 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELS-SCASLQTLILSRNKIKDWPDAILT------- 424 (563)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~------- 424 (563)
.......++|+.|++++|.++.+|..+. .+++|+.|++++|++..++...+.
T Consensus 666 --------------------~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 666 --------------------SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp --------------------CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred --------------------hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 0000011234444444444444443322 344444444444444433332222
Q ss_pred cCCCCCEEEcCCCCCcccCCccc-CCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCC------Cccc-ccchhhhc
Q 008495 425 SLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR------MQLR-EAPTDILR 496 (563)
Q Consensus 425 ~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------~~l~-~~~~~~~~ 496 (563)
++++|++|+|++|++..++.... ..+++|+.|++++|.++. .+..+..+++|+.|++++ |++. .+|..+..
T Consensus 726 nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred ccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 12255555555555554443311 255555555555555554 234445555555555544 4433 66777778
Q ss_pred cCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCCC
Q 008495 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539 (563)
Q Consensus 497 ~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~ 539 (563)
+++|++|++++|.++.+|..+. ++|+.|+|++|++..+...
T Consensus 805 L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 805 CPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp CSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred CCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChH
Confidence 8888888888888877877654 5888888888887765543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-40 Score=349.60 Aligned_cols=430 Identities=23% Similarity=0.327 Sum_probs=324.3
Q ss_pred CCCcEEEcCCCCCC-CcchhhhcCCCccEEEc-CCCcCCCC-Cchhccc----C-----CccE------EEc-cCCCCC-
Q 008495 68 PLLTVLNVSHNKLS-ELPAAIGELHMLKSLDV-SFNSIMKI-PDEIGSA----T-----ALVK------FDC-SSNQLK- 127 (563)
Q Consensus 68 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l-~~~~l~~~-~~~~~~~----~-----~L~~------L~l-~~~~~~- 127 (563)
.+++.|+|+++.+. .+|..+.++++|++|+| ++|.+... +...... . .++. +.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999998887 67888889999999999 66655421 1110000 0 0000 000 000000
Q ss_pred -----------CCcccccccCCCCeEecCC--CccccCccccccCCCccEEEecCCcccc------------------cc
Q 008495 128 -----------ELPSSLGRCLNLSDFKASN--NCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS 176 (563)
Q Consensus 128 -----------~~~~~~~~~~~L~~L~l~~--~~~~~i~~~l~~~~~L~~L~l~~~~i~~------------------~~ 176 (563)
..+........++.+.+.. |.+..+|..+..+++|++|++++|.++. ++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0000111223344444443 5666688888999999999999998887 55
Q ss_pred hhhhc--cccccceEEcCCCcC-CCCcccccCCCcccEEeccCCc-ccc--cCCCccccc-------ccceEEcCCCCCc
Q 008495 177 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSSISGCC-------SLAEFYMGNNALS 243 (563)
Q Consensus 177 ~~~~~--~~~~L~~L~l~~~~l-~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~~~~~~-------~L~~L~l~~~~~~ 243 (563)
.. +. ++++|+.|++++|.+ +.+|..+..+++|+.|++++|+ +.. +|..+..++ +|+.|++++|.+.
T Consensus 483 ~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 44 44 888899999988875 5678888888999999999987 664 665555444 8999999999998
Q ss_pred cCch--hhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCC-CcEEEcCCCccccccccccCC
Q 008495 244 ALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNG 320 (563)
Q Consensus 244 ~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~ 320 (563)
.+|. .+..+++|+.|++++|.++.++......+|+.|++++|.+..+|..+..+++ |++|++++|.+..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp------ 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP------ 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC------
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc------
Confidence 8888 8899999999999999888777333345589999999888888888888888 999999888775433
Q ss_pred CChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhcc--CCccEEECCCCCCCcCCcc
Q 008495 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE 398 (563)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~l~~~ 398 (563)
..+... ++|+.|++++|.+...++.
T Consensus 636 -----------------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 636 -----------------------------------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -----------------------------------------------------SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -----------------------------------------------------hhhhccccCCCCEEECcCCcCCCcccc
Confidence 222222 3588999999988653222
Q ss_pred c----c--CCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCC-------CcccEEeCCCccCCC
Q 008495 399 L----S--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASL 465 (563)
Q Consensus 399 l----~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~ 465 (563)
+ . .+++|+.|++++|.++.++...+..+++|+.|+|++|.+..++...+... ++|+.|++++|.++.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 2 2 45689999999999999998888899999999999999998887655543 399999999999985
Q ss_pred CCCCCCC--CCCCCCeEEcCCCcccccchhhhccCCccEEEcCC------CcCC-chhhhccCCCCCCEEECCCCCCCcC
Q 008495 466 PENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 466 ~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~------~~l~-~l~~~l~~l~~L~~L~l~~n~l~~~ 536 (563)
. +..+. .+++|+.|++++|++..+|..+..+++|+.|++++ |.+. .+|..+.++++|+.|+|++|+++.+
T Consensus 743 l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 743 L-SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp C-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred c-hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 4 45555 89999999999999999999999999999999987 5554 6788899999999999999999999
Q ss_pred CCCcccCcccCcEEEcCCCCccccc
Q 008495 537 PPELGLLEPSLQALRLDGNPLRRYG 561 (563)
Q Consensus 537 ~~~~~~~~~~L~~L~l~~~~~~~~~ 561 (563)
|..+. ++|+.|++++|++..++
T Consensus 822 p~~l~---~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 822 DEKLT---PQLYILDIADNPNISID 843 (876)
T ss_dssp CSCCC---SSSCEEECCSCTTCEEE
T ss_pred CHhhc---CCCCEEECCCCCCCccC
Confidence 98744 68999999999997764
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-40 Score=341.39 Aligned_cols=447 Identities=20% Similarity=0.223 Sum_probs=242.9
Q ss_pred cccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcc-hhhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccC
Q 008495 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (563)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~ 123 (563)
..+.++++++.++.+|..+. ++|++|++++|.+..++ ..|.++++|++|++++|.++.+ |..|..+++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 33555565555555554432 55566666665555553 3555555666666665555544 44455556666666666
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCc--cccccCCCccEEEecCCcccccchhhhcccccc--ceEEcCCCcC--C
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--N 197 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L--~~L~l~~~~l--~ 197 (563)
|.++.+|.. .+++|++|++++|.+..++ ..+..+++|++|++++|.+.... +..++.| +.|++++|.+ .
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccccc
Confidence 655555544 5556666666666555432 45666666666666666555422 3333444 6666666655 2
Q ss_pred C-CcccccCCC-cccEEeccCCccccc--CCCcccccccceEEcCCCCCc-----cCchhhcCCCCCcEEEccCCcccc-
Q 008495 198 G-MPETIGSLS-RLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE- 267 (563)
Q Consensus 198 ~-~~~~l~~~~-~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~- 267 (563)
. .+..+..+. ....+++++|.+... ...+..+++|+.+++++|... .....+...++|+.+++.++.+..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 2 233333322 111345555554421 112345667777777776421 223456677777777777665542
Q ss_pred ----ccccccceeeeEEEcCCCCCCC-CCccc-----cCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCC
Q 008495 268 ----YCVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337 (563)
Q Consensus 268 ----~~~~~~~~~L~~L~l~~~~~~~-~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (563)
++......+|++|++++|.+.+ +|..+ +.++.|+.+++..+.+ .++.. .
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--------~------------ 323 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--------A------------ 323 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--------H------------
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--------h------------
Confidence 2222223368888888887774 66554 4444444444444332 11100 0
Q ss_pred CCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCC
Q 008495 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417 (563)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~ 417 (563)
...+....+++.+++++|.+..++ ....+++|+.|++++|.+++
T Consensus 324 -----------------------------------~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 324 -----------------------------------LYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp -----------------------------------HHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCT
T ss_pred -----------------------------------hhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCcccc
Confidence 001111235566666666554432 12455666666666666666
Q ss_pred CChHHhhcCCCCCEEEcCCCCCcccCC--cccCCCCcccEEeCCCccCCC-CCCCCCCCCCCCCeEEcCCCcccc-cchh
Q 008495 418 WPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLRE-APTD 493 (563)
Q Consensus 418 ~~~~~~~~~~~L~~L~L~~~~l~~~~~--~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~l~~-~~~~ 493 (563)
..+..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.++. .....+..+++|+.|++++|+++. .+..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 444445666666666666666665432 235566666666666666655 333445666666666666666642 2221
Q ss_pred hhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCcc
Q 008495 494 ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 494 ~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
+. ++|++|++++|.++.+|..+..+++|+.|++++|+++.+|+..+..+++|+.|++++|+++
T Consensus 448 l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 11 4666677776666666665556666777777777666666653333366667777766664
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-40 Score=338.96 Aligned_cols=443 Identities=23% Similarity=0.260 Sum_probs=350.2
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCc-chh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (563)
...+++|+++++++++|.+++ +++++|++++|.+..++ ..|..+++|++|++++|.++.+ |..
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred CCCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 344789999999999998774 57999999999999886 6899999999999999999987 568
Q ss_pred hhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCc--ccccccCCCCeEecCCCccccCccccccCCCc--
Q 008495 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM-- 162 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L-- 162 (563)
|.++++|++|++++|.++.+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+... .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L 171 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHL 171 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCE
T ss_pred hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhcee
Confidence 99999999999999999988877 8999999999999999764 7899999999999999988753 45556666
Q ss_pred cEEEecCCcc--cccchhhhcccc-ccceEEcCCCcCCC-C-cccccCCCcccEEeccCCcc-----cccCCCccccccc
Q 008495 163 SKLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSL 232 (563)
Q Consensus 163 ~~L~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~l~~-~-~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L 232 (563)
++|++++|.+ .......+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|.. ......+..+++|
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9999999988 555444455543 11245777777643 2 23466788999999999852 2233456677888
Q ss_pred ceEEcCCCCCc-----cCchhhcCCCCCcEEEccCCccc-ccccccc-----c-eeeeEEEcCCCCCCCCCc-ccc---C
Q 008495 233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEAC-----Q-LRLSVLDLSNNSLSGLPP-EIG---K 296 (563)
Q Consensus 233 ~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~-----~-~~L~~L~l~~~~~~~~~~-~~~---~ 296 (563)
+.++++++.+. .++..+ ..++|++|++++|.+. .++...+ . ..|+.+++..+.+ .+|. .+. .
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence 88888877665 233322 3459999999999987 5555442 1 2255555655555 4442 222 2
Q ss_pred CCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhh
Q 008495 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376 (563)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 376 (563)
..+++++++++|.+..+. ..
T Consensus 330 ~~~L~~L~l~~n~~~~~~------------------------------------------------------------~~ 349 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV------------------------------------------------------------CP 349 (562)
T ss_dssp TCCCSEEEEESSCCCCCC------------------------------------------------------------CC
T ss_pred cCcceEEEccCCCccccc------------------------------------------------------------Cc
Confidence 367888988888653210 01
Q ss_pred hccCCccEEECCCCCCCc-CCccccCCCCCcEEEcccCCCCCCCh--HHhhcCCCCCEEEcCCCCCcc-cCCcccCCCCc
Q 008495 377 WEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPM 452 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~ 452 (563)
..+++|++|++++|.+++ +|..+..+++|+.|++++|++++++. ..+..+++|++|++++|.+.. ++...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 356789999999999887 67778999999999999999998764 447889999999999999998 77777899999
Q ss_pred ccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCC
Q 008495 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531 (563)
Q Consensus 453 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n 531 (563)
|++|++++|.++...+..+. ++|+.|++++|+++.+|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 99999999998765443333 799999999999999999888999999999999999999877 899999999999999
Q ss_pred CCC
Q 008495 532 NIS 534 (563)
Q Consensus 532 ~l~ 534 (563)
++.
T Consensus 508 ~~~ 510 (562)
T 3a79_B 508 PWD 510 (562)
T ss_dssp CBC
T ss_pred CcC
Confidence 876
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-40 Score=342.04 Aligned_cols=413 Identities=19% Similarity=0.256 Sum_probs=316.2
Q ss_pred hhcceeeCCCCccc-ccchHHhhccccccCCCcccccccccEEEccCCCccc-------------hh-------------
Q 008495 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-------------LK------------- 61 (563)
Q Consensus 9 ~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-------------l~------------- 61 (563)
..++.|+++++++. .+|..+.. +++|++|++++|.+.. +|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~ 147 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence 46889999999987 77765533 7899999999996510 00
Q ss_pred --------Hhh-------------------cCCCCCcEEEcC--CCCCCCcchhhhcCCCccEEEcCCCcCCC-------
Q 008495 62 --------EDL-------------------RNLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK------- 105 (563)
Q Consensus 62 --------~~~-------------------~~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~l~~------- 105 (563)
..+ .....++.+.+. +|.++.+|..+.++++|++|++++|.++.
T Consensus 148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence 000 011122222222 34566788889999999999999999987
Q ss_pred -----------CCchhc--ccCCccEEEccCCCCC-CCcccccccCCCCeEecCCCc-ccc--CccccccC------CCc
Q 008495 106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM 162 (563)
Q Consensus 106 -----------~~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--i~~~l~~~------~~L 162 (563)
+|..+. ++++|++|++++|.+. .+|..+.++++|++|++++|. +.. +|..+..+ ++|
T Consensus 228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 898888 9999999999999876 678889999999999999997 774 77777765 899
Q ss_pred cEEEecCCcccccch-hhhccccccceEEcCCCcCC-CCcccccCCCcccEEeccCCcccccCCCcccccc-cceEEcCC
Q 008495 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN 239 (563)
Q Consensus 163 ~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~ 239 (563)
++|++++|.++.++. ..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999999999997765 25889999999999999997 788 888899999999999999999999999999 99999999
Q ss_pred CCCccCchhhcCCC--CCcEEEccCCcccccccc-c--------cceeeeEEEcCCCCCCCCCcc-ccCCCCCcEEEcCC
Q 008495 240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVE-A--------CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTG 307 (563)
Q Consensus 240 ~~~~~l~~~l~~~~--~L~~L~l~~~~l~~~~~~-~--------~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 307 (563)
|.+..+|..+...+ +|++|++++|.+...... . ...+|++|++++|.++.++.. +..+++|++|++++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 99998888777655 899999999998754322 2 223599999999999998876 45689999999999
Q ss_pred CccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEEC
Q 008495 308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387 (563)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l 387 (563)
|.++.++...+.. .......+++|+.|++
T Consensus 467 N~l~~i~~~~~~~---------------------------------------------------~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 467 NMLTEIPKNSLKD---------------------------------------------------ENENFKNTYLLTSIDL 495 (636)
T ss_dssp SCCSBCCSSSSEE---------------------------------------------------TTEECTTGGGCCEEEC
T ss_pred CCCCCcCHHHhcc---------------------------------------------------ccccccccCCccEEEC
Confidence 9887554332211 0011123347788888
Q ss_pred CCCCCCcCCcccc--CCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcC------CCCCcccCCcccCCCCcccEEeCC
Q 008495 388 SRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD------NNPLRQVPSDGFKDIPMLQILDLS 459 (563)
Q Consensus 388 ~~~~l~~l~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~------~~~l~~~~~~~~~~~~~L~~L~l~ 459 (563)
++|.++.+|..+. .+++|+.|++++|+++.++. .+..+++|++|+++ +|.+.+..+..+..+++|++|+++
T Consensus 496 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 8888777777765 77888888888888877543 35678888888884 455555545557888888888888
Q ss_pred CccCCCCCCCCCCCCCCCCeEEcCCCccccc
Q 008495 460 YNIASLPENPPFSSLPHLQELYLRRMQLREA 490 (563)
Q Consensus 460 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 490 (563)
+|.++.+ +..+. ++|+.|++++|++..+
T Consensus 575 ~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDIRKV-NEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCCBC-CSCCC--TTCCEEECCSCTTCEE
T ss_pred CCcCCcc-CHhHh--CcCCEEECcCCCCccc
Confidence 8888544 33333 7889999999887754
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-39 Score=319.36 Aligned_cols=419 Identities=26% Similarity=0.299 Sum_probs=187.2
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCC-CcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEcc
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 122 (563)
.+.|++|+++++.++++|+.++++++|++|++++|.+. .+|..++++++|+.+++..|.. .++++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEECT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEec
Confidence 46788888888888888888888888888888888776 5677777776653333332211 234555555
Q ss_pred CCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCccc
Q 008495 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (563)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 202 (563)
+|.++.+|.. .++|++|++++|.+..++.. .++|++|++++|.+..++.. .++|++|++++|.++.+| .
T Consensus 80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence 5555544432 24555555555555554432 25566666666655544321 145666666666666655 3
Q ss_pred ccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEc
Q 008495 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (563)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 282 (563)
+..+++|++|++++|++..+|... .+|++|++++|.+..+| .++.+++|++|++++|.++.++... .+|++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence 666666666666666666555432 36777777777766665 4667777777777777766654332 35777788
Q ss_pred CCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhcccccccee
Q 008495 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (563)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (563)
++|.++.+| .++.+++|+++++++|.++.++. ....++++
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~---------------------------------------~~~~L~~L 262 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---------------------------------------LPPSLEAL 262 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS---------------------------------------CCTTCCEE
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc---------------------------------------cccccCEE
Confidence 887777776 37788888888888887654321 01233444
Q ss_pred ecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCccc
Q 008495 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (563)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 442 (563)
+++++.+..++.. .++|+.+++++|.++.++.. .++|+.|++++|+++++.. ..++|++|++++|++.++
T Consensus 263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~l 332 (454)
T 1jl5_A 263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIEL 332 (454)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCccccc
Confidence 4444444433321 24455555555555443321 1445555555555444221 113555555555555443
Q ss_pred CCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCC
Q 008495 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 522 (563)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~ 522 (563)
+.. +++|++|++++|.++.... .+++|++|++++|++..++..- .++..|.. ++....+|. .+++
T Consensus 333 p~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip---~~l~~L~~-n~~~~~i~~---~~~~ 397 (454)
T 1jl5_A 333 PAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIP---ESVEDLRM-NSHLAEVPE---LPQN 397 (454)
T ss_dssp CCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCC---TTCCEEEC-CC--------------
T ss_pred ccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCCh---HHHHhhhh-ccccccccc---ccCc
Confidence 321 3455555555555443221 2445555555555444321100 01111111 111112222 1277
Q ss_pred CCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCcc
Q 008495 523 LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 523 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
|+.|++++|+++.++. .+.+++.|.+.+|.+.
T Consensus 398 L~~L~ls~N~l~~~~~----iP~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 398 LKQLHVETNPLREFPD----IPESVEDLRMNSERVV 429 (454)
T ss_dssp ------------------------------------
T ss_pred CCEEECCCCcCCcccc----chhhHhheeCcCcccC
Confidence 8888888888775432 2356777777777654
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-37 Score=324.03 Aligned_cols=477 Identities=20% Similarity=0.238 Sum_probs=366.7
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcch-h
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~ 86 (563)
.++++||++++.++.+|+..+.. +++|++|+|++|.|+.++ ++|+++++|++|+|++|+++.++. .
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 47899999999999999887766 788999999999999886 479999999999999999999875 7
Q ss_pred hhcCCCccEEEcCCCcCCCCCc-hhcccCCccEEEccCCCCCC--CcccccccCCCCeEecCCCccccCc-cccccCCC-
Q 008495 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK- 161 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~- 161 (563)
|.++++|++|++++|.++.++. .|+++++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8999999999999999998865 58999999999999999984 4678889999999999999988653 33444333
Q ss_pred ---ccEEEecCCcccccchhhhccccccceEEcCCCcCC--CCc------------------------------ccccCC
Q 008495 162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMP------------------------------ETIGSL 206 (563)
Q Consensus 162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~--~~~------------------------------~~l~~~ 206 (563)
...++++.+.+..+....+.. ..++.+.+.++... ..+ ..+...
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 346778888777666553332 33445555544321 011 112222
Q ss_pred CcccEEeccCCc----ccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEc
Q 008495 207 SRLIRLDLHQNR----ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (563)
Q Consensus 207 ~~L~~L~l~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 282 (563)
..+...++..+. .......+....+++.+.+.++.+..++ .+.....++.|++.++.+..++... ...++.+++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~L~~l~l 356 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTF 356 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCB-CTTCCEEEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCccc-chhhhhccc
Confidence 333333333221 1133445666778899999888877664 3667789999999999887655432 234888888
Q ss_pred CCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhcccccccee
Q 008495 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (563)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (563)
..+...... ....+++++.++++.|.+....... ........++.+
T Consensus 357 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~---------------------------------~~~~~~~~L~~L 402 (635)
T 4g8a_A 357 TSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCS---------------------------------QSDFGTISLKYL 402 (635)
T ss_dssp ESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECC---------------------------------HHHHSCSCCCEE
T ss_pred ccccCCCCc-ccccccccccchhhccccccccccc---------------------------------cchhhhhhhhhh
Confidence 888766543 3456889999999998775332100 011123467888
Q ss_pred ecCCCCCCcCChhhhccCCccEEECCCCCCCcCC--ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCc
Q 008495 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (563)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~ 440 (563)
++..+.....+..+..++.++.+++..+...... ..+..+++++.+++++|.+.......+..+++|+.|++++|...
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 8888877777777888999999999988765532 34778899999999999999888888899999999999999754
Q ss_pred -ccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccc-hhhhccCCccEEEcCCCcCCch-hhhc
Q 008495 441 -QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSI-PEGF 517 (563)
Q Consensus 441 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~l-~~~l 517 (563)
.+.+..|..+++|++|++++|.++...+..|..+++|++|++++|+++.++ ..+..+++|++|++++|.++.+ |+.+
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 345566899999999999999999988889999999999999999999774 4578899999999999999977 5567
Q ss_pred cCC-CCCCEEECCCCCCC
Q 008495 518 KNL-TSLTELDLSDNNIS 534 (563)
Q Consensus 518 ~~l-~~L~~L~l~~n~l~ 534 (563)
..+ ++|+.|++++|++.
T Consensus 563 ~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCCTTCCEEECTTCCBC
T ss_pred HhhhCcCCEEEeeCCCCc
Confidence 777 68999999998765
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-37 Score=307.20 Aligned_cols=404 Identities=25% Similarity=0.291 Sum_probs=266.7
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCcc-chhHhhcCCCCC-------------cEE
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TVL 73 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~l~~~~~~~~~L-------------~~L 73 (563)
.+.+++++++++.++++|.++.+ +++|++|++++|.+. .+|..++.+.+| +.|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 57899999999999999987643 789999999999887 778888888765 999
Q ss_pred EcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCc
Q 008495 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (563)
Q Consensus 74 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~ 153 (563)
++++|+++.+|.. .++|++|++++|.++.+|.. .++|++|++++|.++.++... ++|++|++++|.+..+|
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC
T ss_pred EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc
Confidence 9999998888762 47899999999998888753 478999999999888776432 68999999999998887
Q ss_pred cccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccc
Q 008495 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (563)
Q Consensus 154 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 233 (563)
.+..+++|++|++++|.++.++.. ..+|++|++++|.++.+| .+..+++|++|++++|.+..+|... ++|+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 689999999999999988876542 358999999999998887 5888899999999999888776543 5899
Q ss_pred eEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccc
Q 008495 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (563)
Q Consensus 234 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 313 (563)
+|++++|.+..+|. +..+++|++|++++|.++.++.. ..+|++|++++|.+++++.. .++|+++++++|.++.+
T Consensus 219 ~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred EEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence 99999998888874 88889999999999988876643 24588888888888776653 36788888888766432
Q ss_pred cccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCC
Q 008495 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393 (563)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 393 (563)
+ .+ .++|+.|++++|.++
T Consensus 293 ~--------------------------------------------------------~~------~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 293 S--------------------------------------------------------EL------PPNLYYLNASSNEIR 310 (454)
T ss_dssp S--------------------------------------------------------CC------CTTCCEEECCSSCCS
T ss_pred c--------------------------------------------------------Cc------CCcCCEEECcCCcCC
Confidence 1 01 257889999999887
Q ss_pred cCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCC--CCCCC
Q 008495 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP--ENPPF 471 (563)
Q Consensus 394 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~ 471 (563)
.++.. .++|+.|++++|++++++. .+++|++|++++|.+..++. .+++|++|++++|.++.. .+.
T Consensus 311 ~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~-- 377 (454)
T 1jl5_A 311 SLCDL---PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPE-- 377 (454)
T ss_dssp EECCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCT--
T ss_pred cccCC---cCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChH--
Confidence 76531 2589999999999988654 36999999999999998775 478999999999999873 332
Q ss_pred CCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCC
Q 008495 472 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 472 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~ 534 (563)
.+..|.. ++....+|. .+++|+.|++++|.++.+|. +. ++++.|.+.+|.+.
T Consensus 378 ----~l~~L~~-n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~-iP--~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 378 ----SVEDLRM-NSHLAEVPE---LPQNLKQLHVETNPLREFPD-IP--ESVEDLRMNSERVV 429 (454)
T ss_dssp ----TCCEEEC-CC-------------------------------------------------
T ss_pred ----HHHhhhh-ccccccccc---ccCcCCEEECCCCcCCcccc-ch--hhHhheeCcCcccC
Confidence 2333432 123334443 25789999999999986532 11 35777888888765
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-35 Score=297.17 Aligned_cols=347 Identities=22% Similarity=0.336 Sum_probs=218.5
Q ss_pred cCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEec
Q 008495 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~ 168 (563)
.+++++.|+++++.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 4568899999999888876 47888999999999999888766 8888899999999998887765 8888999999998
Q ss_pred CCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchh
Q 008495 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (563)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 248 (563)
+|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++ .+..++ .+..+++|++|++++|.+..++ .
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~ 194 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS-V 194 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-G
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-h
Confidence 888887765 778888888888888887765 377778888888864 333332 3667777777777777777654 3
Q ss_pred hcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHH
Q 008495 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (563)
Q Consensus 249 l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
+..+++|++|++++|.+..........+|+.|++++|.+++++ .+..+++|++|++++|.+..
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~---------------- 257 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN---------------- 257 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC----------------
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc----------------
Confidence 6667777777777776665443322333555555555444432 24444444444444443321
Q ss_pred hhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEE
Q 008495 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L 408 (563)
++. +..+++|++|++++|.++.++. +..+++|+.|
T Consensus 258 -------------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 258 -------------------------------------------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNL 292 (466)
T ss_dssp -------------------------------------------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred -------------------------------------------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeE
Confidence 111 3334555555555555555443 4555555555
Q ss_pred EcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc
Q 008495 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
++++|++.+.+. +..+++|++|++++|.+.++.. +..+++|+.|++++|.++.. ..+..+++|+.|++++|++.
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 555555555443 4555555555555555554433 44555555555555555443 23455555555555555555
Q ss_pred ccchhhhccCCccEEEcCCCcCCch
Q 008495 489 EAPTDILRLQQLRILDLSQNSLQSI 513 (563)
Q Consensus 489 ~~~~~~~~~~~L~~L~l~~~~l~~l 513 (563)
..+. +..+++|+.|++++|.++.+
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEECC
T ss_pred ccch-hhcCCCCCEEeccCCcccCC
Confidence 4433 44555555555555554443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-35 Score=294.77 Aligned_cols=348 Identities=25% Similarity=0.360 Sum_probs=226.0
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
+++++.|++.++.+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 456888888888777776 37777888888888888777765 7778888888888887776655 77778888888888
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l 203 (563)
|.++.++. +.++++|++|++++|.+..++ .+..+++|++|++++ .+..... +..+++|+.|++++|.+..++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence 77776654 667777777777777776654 467777777777753 3333322 556666666666666655543 24
Q ss_pred cCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcC
Q 008495 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (563)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 283 (563)
..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~---------------------- 251 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA---------------------- 251 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC----------------------
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECC----------------------
Confidence 555556666666555554422 444555555555555555442 34444555555554
Q ss_pred CCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceee
Q 008495 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (563)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (563)
+|.+.+++. +..+++|++|++++|.+..++
T Consensus 252 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~------------------------------------------------- 281 (466)
T 1o6v_A 252 NNQISNLAP-LSGLTKLTELKLGANQISNIS------------------------------------------------- 281 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------------------------------
T ss_pred CCccccchh-hhcCCCCCEEECCCCccCccc-------------------------------------------------
Confidence 444444433 566677777777776653221
Q ss_pred cCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccC
Q 008495 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (563)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 443 (563)
. +..+++|+.|++++|.++.++. +..+++|+.|++++|++++..+ +..+++|++|++++|.+.+++
T Consensus 282 ----------~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 282 ----------P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp ----------G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred ----------c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence 1 3345566777777776666544 5667777777777777776654 567777777777777776653
Q ss_pred CcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccch
Q 008495 444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 492 (563)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 492 (563)
.+..+++|+.|++++|.++...+ +..+++|+.|++++|.++..|.
T Consensus 348 --~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 348 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp --GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred --hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 36677777777777777766544 6677777777777777766543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.7e-35 Score=293.47 Aligned_cols=379 Identities=18% Similarity=0.217 Sum_probs=247.5
Q ss_pred hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCC-Cc-chh
Q 008495 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAA 86 (563)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~-~l-~~~ 86 (563)
.-+.++|++++++++|. + .+++++|++++|.++.+ +..|..+++|++|++++|.+. .+ +..
T Consensus 11 ~~~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~ 74 (455)
T 3v47_A 11 IGYNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74 (455)
T ss_dssp ETTEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT
T ss_pred EccccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc
Confidence 34568999999999998 4 35799999999999876 678999999999999999886 45 447
Q ss_pred hhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCC-Ccc--cccccCCCCeEecCCCccccC-ccc-cccCC
Q 008495 87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPS--SLGRCLNLSDFKASNNCITSL-PED-LADCS 160 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~i-~~~-l~~~~ 160 (563)
|.++++|++|++++|.+..+ |..+..+++|++|++++|.++. ++. .+..+++|++|++++|.+..+ +.. +..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 88899999999999988855 7788889999999999998874 233 377888888888888888866 333 77888
Q ss_pred CccEEEecCCcccccchhhhccc--cccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcC
Q 008495 161 KMSKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238 (563)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 238 (563)
+|++|++++|.+..+....+..+ ..++.+++++|.+..++...... .....+..+++|++|+++
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECT
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecC
Confidence 88888888888877665555554 45666666666665443211000 000112234556666666
Q ss_pred CCCCc-cCchhhc---CCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCC-Cccc--cCCCCCcEEEcCCCccc
Q 008495 239 NNALS-ALPAELG---KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEI--GKMTTLRKLLLTGNPLR 311 (563)
Q Consensus 239 ~~~~~-~l~~~l~---~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~~~~~~ 311 (563)
+|.+. ..+..+. ..++|+.++++++....... ..+.+... ...+ ...++|+++++++|.+.
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred CCcccccchhhhhccccccceeeEeecccccccccc------------chhhhccCcccccccccccCceEEEecCcccc
Confidence 66555 2222222 22566666666665432111 11111110 0111 12457777777777653
Q ss_pred cccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCC
Q 008495 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391 (563)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 391 (563)
.+ .+..+..+++|++|++++|.
T Consensus 289 ~~----------------------------------------------------------~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 289 AL----------------------------------------------------------LKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp EE----------------------------------------------------------CTTTTTTCTTCCEEECTTSC
T ss_pred cc----------------------------------------------------------chhhcccCCCCCEEECCCCc
Confidence 22 12233445666667776666
Q ss_pred CCcC-CccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCC
Q 008495 392 IQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPP 470 (563)
Q Consensus 392 l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 470 (563)
++.+ +..+..+++|+.|++++|.+++.....+..+++|++|++++|.+..+.+..+..+++|++|++++|.++...+..
T Consensus 311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 6654 345666677777777777776666666666777777777777776665555666777777777777666665555
Q ss_pred CCCCCCCCeEEcCCCccc
Q 008495 471 FSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 471 ~~~~~~L~~L~l~~~~l~ 488 (563)
+..+++|+.|++++|++.
T Consensus 391 ~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hccCCcccEEEccCCCcc
Confidence 666666777777666655
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-34 Score=290.64 Aligned_cols=363 Identities=22% Similarity=0.264 Sum_probs=194.8
Q ss_pred cEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCC-cccccccCCCCeEecCCCccc-cC-ccccccCCCccEEEecCC
Q 008495 94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN 170 (563)
Q Consensus 94 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~i-~~~l~~~~~L~~L~l~~~ 170 (563)
+.++.+++.++.+|. + .++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 456666666666665 2 26677777777777654 456667777777777777664 33 334666777777777777
Q ss_pred cccccchhhhccccccceEEcCCCcCCC-Cccc--ccCCCcccEEeccCCccccc-CCC-cccccccceEEcCCCCCccC
Q 008495 171 KLTVLSNNLIASWTMLTELIASKNLLNG-MPET--IGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL 245 (563)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~--l~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~l 245 (563)
.+..+....+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+ +.. +..+++|++|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6666655556666666666666666543 2222 55555666666666655544 222 44555555555555555432
Q ss_pred -chhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCcc---------ccCCCCCcEEEcCCCccccccc
Q 008495 246 -PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE---------IGKMTTLRKLLLTGNPLRTLRS 315 (563)
Q Consensus 246 -~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~ 315 (563)
+..+..+ ...+++.+++++|.+.+++.. +..+++|++|++++|.+.....
T Consensus 170 ~~~~l~~l--------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 170 CEEDLLNF--------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp CTTTSGGG--------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred Chhhhhcc--------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 2222222 012344444544444442211 2234556666666665432110
Q ss_pred cccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcC
Q 008495 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395 (563)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 395 (563)
..+ .......+++.+++++|.....
T Consensus 230 ~~~-------------------------------------------------------~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 230 KRF-------------------------------------------------------FDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp HHH-------------------------------------------------------HHHTTTCCEEEEECTTCTTTSC
T ss_pred hhh-------------------------------------------------------hccccccceeeEeecccccccc
Confidence 000 0000113344444444332210
Q ss_pred C-----------cccc--CCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCcc
Q 008495 396 P-----------PELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (563)
Q Consensus 396 ~-----------~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (563)
. ..+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+++...+..+++|++|++++|.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 0 0011 23456666666666665555555666666666666666666555556666666666666666
Q ss_pred CCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCC
Q 008495 463 ASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~ 534 (563)
++...+..+..+++|++|++++|++..+ +..+..+++|++|++++|.++.+|. .+..+++|+.|++++|+++
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 6555555555666666666666666544 4455556666666666666665543 2455666666666666555
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-34 Score=287.73 Aligned_cols=363 Identities=20% Similarity=0.256 Sum_probs=191.3
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
+++|++|+++++.++.+| .+..+++|++|++++|.++.++ +..+++|++|++++|.++.++ +..+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 455555555555555554 4555555555555555555543 455555555555555555443 44555555555555
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l 203 (563)
|.++.++ +.++++|++|++++|.+..+ .+..+++|++|++++|. .++.+ .+
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~-----------------------~~~~~--~~ 166 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNK-----------------------KITKL--DV 166 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCS-----------------------CCCCC--CC
T ss_pred CcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCC-----------------------ccccc--cc
Confidence 5555443 44455555555555555444 24445555555555442 22222 23
Q ss_pred cCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcC
Q 008495 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (563)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 283 (563)
..+++|+.|++++|.+..++ +..+++|+.|++++|.+..+ .++.+++|++|++++|.++.++ .....+|+.|+++
T Consensus 167 ~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCS 241 (457)
T ss_dssp TTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC
T ss_pred ccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEee
Confidence 34444555555555444443 44445555555555555444 2444555555555555555443 1122235555555
Q ss_pred CCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceee
Q 008495 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (563)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (563)
+|.+++++ .+.+++|+.++++.+.+ +.++
T Consensus 242 ~N~l~~~~--~~~l~~L~~L~l~~n~L-------------------------------------------------~~L~ 270 (457)
T 3bz5_A 242 VNPLTELD--VSTLSKLTTLHCIQTDL-------------------------------------------------LEID 270 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTCCC-------------------------------------------------SCCC
T ss_pred CCcCCCcC--HHHCCCCCEEeccCCCC-------------------------------------------------CEEE
Confidence 55555543 44566777777766543 3334
Q ss_pred cCCCCCC-cCChhhhccCCccEEECCCCCCCc-CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcc
Q 008495 364 LEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (563)
Q Consensus 364 l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 441 (563)
++++... .++ ...+++|+.|++++|.... +|. ..++|+.++++ .+++|++|++++|++++
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSC
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCcccc
Confidence 4444322 222 2445667777777665322 321 23344444333 34677788888887777
Q ss_pred cCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCC-chhhhc-cC
Q 008495 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGF-KN 519 (563)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l-~~ 519 (563)
++ +..+++|+.|++++|.++. ++.|..|.+++|.+... ..+..|..+++++|.++ .+|..+ ..
T Consensus 333 l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 333 LD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp CC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred cc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHhcc
Confidence 53 6777778888887777654 24566666666666543 24556777788888776 566543 23
Q ss_pred CCCCCEEECC
Q 008495 520 LTSLTELDLS 529 (563)
Q Consensus 520 l~~L~~L~l~ 529 (563)
..++.....+
T Consensus 398 ~~~~~~~~~~ 407 (457)
T 3bz5_A 398 FGNPMNIEPG 407 (457)
T ss_dssp TSCCCEEEES
T ss_pred cCceeeccCC
Confidence 3344433333
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-33 Score=277.67 Aligned_cols=351 Identities=25% Similarity=0.318 Sum_probs=271.1
Q ss_pred HHHhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcc
Q 008495 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (563)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~ 84 (563)
+...+.+++|+++++.++.+| ++ .. +++|++|++++|.++.++ ++.+++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l-~~------------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GI-EK------------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccCh-hh-cc------------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 567889999999999999887 22 22 789999999999999885 899999999999999999885
Q ss_pred hhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCC-ccccCccccccCCCcc
Q 008495 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMS 163 (563)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~i~~~l~~~~~L~ 163 (563)
+.++++|++|++++|.++.++ +..+++|++|++++|.++.++ +.++++|++|++++| .+..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999999999875 889999999999999999874 788999999999999 44455 588899999
Q ss_pred EEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCc
Q 008495 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (563)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (563)
+|++++|.++.++ +..++.|+.|++++|.++.++ +..+++|+.|++++|++..+| +..+++|+.|++++|.+.
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9999999999875 788899999999999998874 788999999999999999986 788999999999999999
Q ss_pred cCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCC-CCccccCCCCCcEEEcCCCccccccccccCCCC
Q 008495 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (563)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (563)
.++ ...+++|+.++++++. ++.+++++|.+.+ +| ++.+++|+.|++++|....
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~---------- 300 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY---------- 300 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC----------
T ss_pred CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccc----------
Confidence 875 5678899999988765 4566777777555 43 5678999999999886321
Q ss_pred hHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCC
Q 008495 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402 (563)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~ 402 (563)
.+......+..+ .+..+++|++|++++|.++.++ +..+
T Consensus 301 --------------------------------------~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~--l~~l 338 (457)
T 3bz5_A 301 --------------------------------------LLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD--VSHN 338 (457)
T ss_dssp --------------------------------------EEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred --------------------------------------eeccCCCcceEe--chhhcccCCEEECCCCcccccc--cccC
Confidence 111111111111 1233456666777766666653 5666
Q ss_pred CCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCC
Q 008495 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467 (563)
Q Consensus 403 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 467 (563)
++|+.|++++|+++++ +.|..|.+.+|.+... ..+..|..+++++|.++...
T Consensus 339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEEC
T ss_pred CcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEc
Confidence 6666677666666542 3444455555554433 12344555566666665433
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-32 Score=265.60 Aligned_cols=307 Identities=25% Similarity=0.370 Sum_probs=224.1
Q ss_pred cccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceE
Q 008495 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235 (563)
Q Consensus 156 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 235 (563)
+..+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 4556677777777776666543 5666666666666666665554 556666666666666655543 35555556666
Q ss_pred EcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccc
Q 008495 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315 (563)
Q Consensus 236 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 315 (563)
++++|.+..++. +..+++|++|++++|. .......+..+++|++++++++.+..+
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~----------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 170 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANH----------------------NLSDLSPLSNMTGLNYLTVTESKVKDV-- 170 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCT----------------------TCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCC----------------------CcccccchhhCCCCcEEEecCCCcCCc--
Confidence 666655555543 5555555555555543 222233467778888888887765322
Q ss_pred cccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcC
Q 008495 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395 (563)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 395 (563)
+ .+..+++|+++++++|.+..+
T Consensus 171 ---------------------------------------------------------~-~~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 171 ---------------------------------------------------------T-PIANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ---------------------------------------------------------G-GGGGCTTCSEEECTTSCCCCC
T ss_pred ---------------------------------------------------------h-hhccCCCCCEEEccCCccccc
Confidence 1 145677888899988888877
Q ss_pred CccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCC
Q 008495 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (563)
Q Consensus 396 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 475 (563)
+. +..+++|+.+++++|.+.+... +..+++|++|++++|.+..++. +..+++|++|++++|.++.. ..+..++
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 65 7788999999999998888766 6889999999999999888765 88899999999999988775 4578899
Q ss_pred CCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCC
Q 008495 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 554 (563)
Q Consensus 476 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 554 (563)
+|+.|++++|++..+ ..+..+++|++|++++|.++.. |..+..+++|+.|++++|+++.+++ +..+ ++|+.|++++
T Consensus 266 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL-SKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC-TTCSEESSSC
T ss_pred CcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh-hccceeehhh
Confidence 999999999999987 4578899999999999999855 5668899999999999999998876 4444 8999999999
Q ss_pred CCccc
Q 008495 555 NPLRR 559 (563)
Q Consensus 555 ~~~~~ 559 (563)
|++++
T Consensus 343 N~i~~ 347 (347)
T 4fmz_A 343 QVIKK 347 (347)
T ss_dssp C----
T ss_pred hcccC
Confidence 99864
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-32 Score=262.91 Aligned_cols=306 Identities=20% Similarity=0.324 Sum_probs=176.5
Q ss_pred hcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEe
Q 008495 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (563)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (563)
+..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+.++++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 445677888888888877775 37778888888888887777655 777788888888887777664 466677777777
Q ss_pred cCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccC
Q 008495 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (563)
Q Consensus 144 l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~ 223 (563)
+++|.+..++. +..+++|++|++++|........ +..++.|++|++++|.+..++. +
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~-------------------- 173 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-I-------------------- 173 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G--------------------
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-h--------------------
Confidence 77776666644 66666666666666633222211 4445555555555554444332 3
Q ss_pred CCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEE
Q 008495 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303 (563)
Q Consensus 224 ~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 303 (563)
..+++|++|++++|.+..++. +..+++|+.+++++|.+..++......+|++|++++|.++.++. +..+++|++|
T Consensus 174 ---~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 174 ---ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL 248 (347)
T ss_dssp ---GGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ---ccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence 344444444444444444433 44444555555554444433322222224444444444444333 5556666666
Q ss_pred EcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCcc
Q 008495 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (563)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~ 383 (563)
++++|.++.+ ..+..+++|+
T Consensus 249 ~l~~n~l~~~------------------------------------------------------------~~~~~l~~L~ 268 (347)
T 4fmz_A 249 EIGTNQISDI------------------------------------------------------------NAVKDLTKLK 268 (347)
T ss_dssp ECCSSCCCCC------------------------------------------------------------GGGTTCTTCC
T ss_pred ECCCCccCCC------------------------------------------------------------hhHhcCCCcC
Confidence 6666654211 1233445666
Q ss_pred EEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccC
Q 008495 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (563)
Q Consensus 384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l 463 (563)
.|++++|.+++++ .+..+++|+.|++++|.+++.....+..+++|++|++++|++.++++ +..+++|++|++++|.+
T Consensus 269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 6666666665552 35566666666666666666665556666666666666666665544 55566666666666654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.8e-32 Score=264.87 Aligned_cols=305 Identities=22% Similarity=0.259 Sum_probs=205.8
Q ss_pred cCCCCeEecCCCccccCccc-cccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCc-ccccCCCcccEEe
Q 008495 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 213 (563)
Q Consensus 136 ~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~ 213 (563)
+++++.++++++.+..+|.. +..+++|++|++++|.+..++...+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666655543 455666666666666666555555556666666666666555443 2345555555555
Q ss_pred ccCCcccccCCC-cccccccceEEcCCCCCccCc-hhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCC
Q 008495 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (563)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (563)
+++|.+..++.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+ +.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~- 180 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL----------------------THV- 180 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC----------------------SBC-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC----------------------Ccc-
Confidence 555555555443 345555555555555555432 2344555555555554443 332
Q ss_pred ccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCc
Q 008495 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (563)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (563)
.++.+++|+++++++|.+..+
T Consensus 181 -~~~~l~~L~~L~l~~n~l~~~---------------------------------------------------------- 201 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLLSTL---------------------------------------------------------- 201 (390)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred -ccccccccceeeccccccccc----------------------------------------------------------
Confidence 244567777777777765322
Q ss_pred CChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCC
Q 008495 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (563)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 451 (563)
...+.++++++++|.+..++.. ..++|+.|++++|.+++.. .+..+++|++|++++|.+.++....+..++
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred -----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 1234688888888888776543 3578999999999888763 468889999999999988887667788888
Q ss_pred cccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCC
Q 008495 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n 531 (563)
+|++|++++|.++... ..+..+++|+.|++++|++..++..+..+++|++|++++|.++.++ +..+++|+.|++++|
T Consensus 273 ~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 273 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 9999999988887643 3456788888888888888888888888888888888888888775 677788888888888
Q ss_pred CCC
Q 008495 532 NIS 534 (563)
Q Consensus 532 ~l~ 534 (563)
++.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 776
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-31 Score=259.55 Aligned_cols=305 Identities=20% Similarity=0.251 Sum_probs=172.2
Q ss_pred cCCccEEEccCCCCCCCccc-ccccCCCCeEecCCCccccCcc-ccccCCCccEEEecCCcccccchhhhccccccceEE
Q 008495 113 ATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190 (563)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 190 (563)
+++++.++++++.++.+|.. +..+++|++|+++++.+..++. .+..+++|++|++++|.+..++...+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666655543 4556666666666666655443 456666666666666666666555566666666666
Q ss_pred cCCCcCCCCccc-ccCCCcccEEeccCCcccccC-CCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccc
Q 008495 191 ASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (563)
Q Consensus 191 l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 268 (563)
+++|.++.+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++ +..+++|+++++++|.++.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence 666666655544 355666666666666665442 33555666666666666665442 34455555555555544321
Q ss_pred cccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhH
Q 008495 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348 (563)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (563)
...++++++++++|.+..++.
T Consensus 202 --------------------------~~~~~L~~L~l~~n~l~~~~~--------------------------------- 222 (390)
T 3o6n_A 202 --------------------------AIPIAVEELDASHNSINVVRG--------------------------------- 222 (390)
T ss_dssp --------------------------ECCSSCSEEECCSSCCCEEEC---------------------------------
T ss_pred --------------------------CCCCcceEEECCCCeeeeccc---------------------------------
Confidence 122345555555554432210
Q ss_pred HHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCC
Q 008495 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428 (563)
Q Consensus 349 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 428 (563)
...++|+.|++++|.+++. +.+..+++|+.|++++|.+.+..+..+..+++
T Consensus 223 ----------------------------~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 223 ----------------------------PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp ----------------------------CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ----------------------------cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 0023556666666665554 34555666666666666666655555566666
Q ss_pred CCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCC
Q 008495 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508 (563)
Q Consensus 429 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 508 (563)
|++|++++|++..++.. +..+++|++|++++|.++.. +..+..+++|+.|++++|++..++ +..+++|+.|++++|
T Consensus 274 L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 66666666666655432 35556666666666665533 223445566666666666666553 445566666666666
Q ss_pred cCC
Q 008495 509 SLQ 511 (563)
Q Consensus 509 ~l~ 511 (563)
.+.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 655
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=9.3e-31 Score=264.15 Aligned_cols=314 Identities=22% Similarity=0.323 Sum_probs=166.0
Q ss_pred cEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCC-cccccccCCCCeEecCCCc
Q 008495 71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNC 148 (563)
Q Consensus 71 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 148 (563)
+.++.++..++.+|..+. +++++|++++|.+..+ +..|..+++|++|++++|.++.+ +..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 455666666666655332 4566666666666544 34555666666666666655543 3445555555555555555
Q ss_pred cccCccc-cccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCccccc-CCCc
Q 008495 149 ITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSI 226 (563)
Q Consensus 149 ~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~ 226 (563)
+..++.. |..+++|++|++++|.+..+... .+..+++|++|++++|.+..+ +..+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDY-----------------------MFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----------------------TTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChh-----------------------HccccccCCEEECCCCccceeChhhc
Confidence 5544432 44555555555555554444333 344445555555555554433 2345
Q ss_pred ccccccceEEcCCCCCccCch-hhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEc
Q 008495 227 SGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (563)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 305 (563)
..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++ +..+..+++|++|++
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~---------------------~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---------------------DYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC---------------------TTCSCSCTTCCEEEE
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC---------------------hhhcccCcccceeeC
Confidence 555566666666665555443 3566666666666665554321 123455566666666
Q ss_pred CCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEE
Q 008495 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385 (563)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L 385 (563)
++|.... .++.......+|+.|
T Consensus 208 ~~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 208 SHWPYLD----------------------------------------------------------TMTPNCLYGLNLTSL 229 (477)
T ss_dssp ECCTTCC----------------------------------------------------------EECTTTTTTCCCSEE
T ss_pred CCCcccc----------------------------------------------------------ccCcccccCccccEE
Confidence 6553210 111111222345555
Q ss_pred ECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCC
Q 008495 386 DLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (563)
Q Consensus 386 ~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (563)
++++|.++.++. .+..+++|+.|++++|.++..+...+..+++|++|++++|.+..+....|..+++|+.|++++|.++
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 555555555542 3455555555555555555555545555555666666665555555555555556666666665555
Q ss_pred CCCCCCCCCCCCCCeEEcCCCccc
Q 008495 465 LPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 465 ~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
...+..+..+++|+.|++++|.+.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred eeCHhHcCCCcccCEEEccCCCcc
Confidence 555545555555666666555544
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=258.65 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=235.0
Q ss_pred cEEEccCCCCCCCcccccccCCCCeEecCCCccccCc-cccccCCCccEEEecCCcccccchhhhccccccceEEcCCCc
Q 008495 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (563)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (563)
+.+++++..++.+|..+. ++++.|+++++.+..++ ..|..+++|++|++++|.+..+....+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 455555555655554432 45666666666666543 456667777777777777776666667777777777777777
Q ss_pred CCCCcc-cccCCCcccEEeccCCccccc-CCCcccccccceEEcCCCCCccC-chhhcCCCCCcEEEccCCccccccccc
Q 008495 196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA 272 (563)
Q Consensus 196 l~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~ 272 (563)
++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------- 164 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL------- 164 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-------
Confidence 766654 356677777777777777644 44566777777777777776644 33566666666666665554
Q ss_pred cceeeeEEEcCCCCCCCCCc-cccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHh
Q 008495 273 CQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (563)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (563)
+.++. .+..+++|+.|++++|.+..++.
T Consensus 165 ---------------~~~~~~~l~~l~~L~~L~l~~n~i~~~~~------------------------------------ 193 (477)
T 2id5_A 165 ---------------TSIPTEALSHLHGLIVLRLRHLNINAIRD------------------------------------ 193 (477)
T ss_dssp ---------------SSCCHHHHTTCTTCCEEEEESCCCCEECT------------------------------------
T ss_pred ---------------cccChhHhcccCCCcEEeCCCCcCcEeCh------------------------------------
Confidence 34333 47788999999999887754321
Q ss_pred hhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCC-cCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCC
Q 008495 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430 (563)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 430 (563)
..+..+++|+.|++++|... .++.......+|+.|++++|+++.++...+..+++|+
T Consensus 194 ----------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 194 ----------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp ----------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred ----------------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 23345678999999988644 4666666667999999999999999988899999999
Q ss_pred EEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCc
Q 008495 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNS 509 (563)
Q Consensus 431 ~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~ 509 (563)
+|++++|.+..++...+..+++|+.|++++|.++...+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 999999999999888899999999999999999998888999999999999999999987664 5788999999999998
Q ss_pred CC
Q 008495 510 LQ 511 (563)
Q Consensus 510 l~ 511 (563)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 76
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.9e-30 Score=263.70 Aligned_cols=305 Identities=23% Similarity=0.257 Sum_probs=199.9
Q ss_pred cCCCCeEecCCCccccCccc-cccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcc-cccCCCcccEEe
Q 008495 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD 213 (563)
Q Consensus 136 ~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~ 213 (563)
+.+++.++++++.+..+|.. +..+++|++|++++|.+..++...+..+++|+.|++++|.+..++. .++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666677777666666543 5666677777777776666665556666666666666666655543 345666666666
Q ss_pred ccCCcccccCCC-cccccccceEEcCCCCCccCch-hhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCC
Q 008495 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (563)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (563)
+++|.+..+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.++.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 666666655544 3556666666666666664432 4556666666666655544321
Q ss_pred ccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCc
Q 008495 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (563)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (563)
++.+++|+++++++|.+..+
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l---------------------------------------------------------- 207 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTL---------------------------------------------------------- 207 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred --hhhhhhhhhhhcccCccccc----------------------------------------------------------
Confidence 33455666666666654321
Q ss_pred CChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCC
Q 008495 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (563)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 451 (563)
.....|+.|++++|.+..++... .++|+.|++++|.+++. ..+..+++|++|++++|.+.++.+..+..++
T Consensus 208 -----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred -----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 11235666777776666554322 25777777777777765 3367777888888888877776666677778
Q ss_pred cccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCC
Q 008495 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n 531 (563)
+|+.|++++|.++.. +..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+| +..+++|+.|++++|
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 888888888777664 33446677888888888888877777777888888888888887774 566778888888888
Q ss_pred CCC
Q 008495 532 NIS 534 (563)
Q Consensus 532 ~l~ 534 (563)
++.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2e-29 Score=260.74 Aligned_cols=129 Identities=20% Similarity=0.354 Sum_probs=57.7
Q ss_pred ccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCcch-hhhcCCCccEEEcCCCcCCCCCc-hhcccCCccEEEc
Q 008495 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDC 121 (563)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l 121 (563)
.+++.++++++.+..+|. .+..+++|++|++++|.+..++. .|..+++|++|++++|.+..++. .|..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 344555555554444442 24444555555555554444432 44444555555555554443322 2344444455555
Q ss_pred cCCCCCCCccc-ccccCCCCeEecCCCccccCcc-ccccCCCccEEEecCCccc
Q 008495 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT 173 (563)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~ 173 (563)
++|.++.+|.. +.++++|++|++++|.+..+++ .+..+++|++|++++|.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 44444444332 2344444444444444443322 2444444444444444443
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-29 Score=239.97 Aligned_cols=282 Identities=22% Similarity=0.293 Sum_probs=234.0
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCc-ch
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PA 85 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~ 85 (563)
.+.++.+++++++++.+|..+. ++++.|++++|.++.++. .|..+++|++|++++|.+..+ |.
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred cCCCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH
Confidence 4578899999999999988663 569999999999998765 789999999999999999977 67
Q ss_pred hhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccc---cCccccccCCC
Q 008495 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT---SLPEDLADCSK 161 (563)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~ 161 (563)
.|..+++|++|++++|.++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+. ..+..+..+++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred HhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 89999999999999999988877654 78999999999998775 45788999999999999886 34567888999
Q ss_pred ccEEEecCCcccccchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCcccccCC-CcccccccceEEcCC
Q 008495 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN 239 (563)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 239 (563)
|++|++++|.++.++.... +.|++|++++|.++.+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++
T Consensus 173 L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 173 LSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 9999999999988765422 7899999999998765 5678889999999999999986654 788899999999999
Q ss_pred CCCccCchhhcCCCCCcEEEccCCccccccccccc--------eeeeEEEcCCCCCCC---CCccccCCCCCcEEEcCCC
Q 008495 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGN 308 (563)
Q Consensus 240 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~ 308 (563)
|.+..+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+.. .+..+..+++++.+++++|
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 99999998899999999999999999877655432 348889999988764 3456778888988888876
Q ss_pred c
Q 008495 309 P 309 (563)
Q Consensus 309 ~ 309 (563)
+
T Consensus 330 ~ 330 (330)
T 1xku_A 330 K 330 (330)
T ss_dssp -
T ss_pred C
Confidence 3
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9e-29 Score=236.88 Aligned_cols=287 Identities=23% Similarity=0.300 Sum_probs=193.7
Q ss_pred cccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccC-CCcccccccceEEcCCCCCccC-chhhcCCCCCcEEEcc
Q 008495 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (563)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~ 261 (563)
..++.++++++.++.+|..+. ++|+.|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 357777777777777776553 67888888888887663 4678888888888888888865 5678888888888888
Q ss_pred CCccccccccccceeeeEEEcCCCCCCCCCcc-ccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCc
Q 008495 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (563)
Q Consensus 262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (563)
+|.++.++.... .+|++|++++|.+..++.. +..+++|++|++++|.++..+
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 163 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-------------------------- 163 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------------
T ss_pred CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------------
Confidence 888776665544 4567777777766665443 566667777766666553110
Q ss_pred cccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCCh
Q 008495 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (563)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 420 (563)
..+..+..+ +|+.|++++|+++.++.
T Consensus 164 -----------------------------------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 164 -----------------------------------------------------FEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp -----------------------------------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred -----------------------------------------------------CCcccccCC-ccCEEECcCCCCCccCc
Confidence 011222223 45555555555544433
Q ss_pred HHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCc
Q 008495 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500 (563)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 500 (563)
.. .++|++|++++|.+..++...+..+++|++|++++|.++...+..+..+++|+.|++++|++..+|..+..+++|
T Consensus 190 ~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 190 DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 21 256666667777666666555777777777777777777766666777788888888888888777778888888
Q ss_pred cEEEcCCCcCCchhh-hccC------CCCCCEEECCCCCCC--cCCCCcccCcccCcEEEcCCCC
Q 008495 501 RILDLSQNSLQSIPE-GFKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 556 (563)
Q Consensus 501 ~~L~l~~~~l~~l~~-~l~~------l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~~~ 556 (563)
+.|++++|.++.++. .+.. .++|+.|++++|++. .+++..+..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888876643 2332 367888888888876 5666666555888888888874
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.5e-28 Score=231.93 Aligned_cols=288 Identities=24% Similarity=0.315 Sum_probs=175.9
Q ss_pred cccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCC-CcccccccceEEcCCCCCccC-chhhcCCCCCcEEEcc
Q 008495 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (563)
Q Consensus 184 ~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~ 261 (563)
..++.++++++.++.+|..+. ++++.|++++|.+..++. .+..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 456777777777777765443 577888888888776654 577788888888888888766 6677888888888888
Q ss_pred CCccccccccccceeeeEEEcCCCCCCCCCc-cccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCc
Q 008495 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (563)
Q Consensus 262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (563)
+|.++.++.... .+|++|++++|.+..++. .+..+++|+++++++|.+...+
T Consensus 109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 161 (330)
T 1xku_A 109 KNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------------- 161 (330)
T ss_dssp SSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--------------------------
T ss_pred CCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC--------------------------
Confidence 887776655443 346666666666666443 3566677777776666542110
Q ss_pred cccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCCh
Q 008495 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (563)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 420 (563)
..+..+..+++|++|++++|.++.+|..+
T Consensus 162 ------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--------------------- 190 (330)
T 1xku_A 162 ------------------------------IENGAFQGMKKLSYIRIADTNITTIPQGL--------------------- 190 (330)
T ss_dssp ------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSC---------------------
T ss_pred ------------------------------cChhhccCCCCcCEEECCCCccccCCccc---------------------
Confidence 11122333445555555555554444322
Q ss_pred HHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCc
Q 008495 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500 (563)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 500 (563)
.++|++|++++|.+.++....+..+++|++|++++|.++...+..+..+++|++|++++|++..+|..+..+++|
T Consensus 191 -----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 191 -----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp -----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred -----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 245555555555555554444555555666666655555554445556666666666666666666666666667
Q ss_pred cEEEcCCCcCCchhhh-cc------CCCCCCEEECCCCCCC--cCCCCcccCcccCcEEEcCCCC
Q 008495 501 RILDLSQNSLQSIPEG-FK------NLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 556 (563)
Q Consensus 501 ~~L~l~~~~l~~l~~~-l~------~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~~~ 556 (563)
++|++++|.++.++.. +. ..++|+.|++++|++. .+++..+..+++++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777766655432 22 2366777788877765 3555555555777777777764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7e-32 Score=271.56 Aligned_cols=371 Identities=20% Similarity=0.208 Sum_probs=183.4
Q ss_pred CccEEEcCCCcCCCC--CchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 92 MLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 92 ~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
+|++|+++++.++.. ...+..+++|++|++++|.++... ...++..+..+++|++|++++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~------------------~~~l~~~l~~~~~L~~L~Ls~ 65 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR------------------CKDISSALRVNPALAELNLRS 65 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH------------------HHHHHHHHHTCTTCCEEECTT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH------------------HHHHHHHHHhCCCcCEEeCCC
Confidence 455555555555422 122445555555555555554110 002233344445555555555
Q ss_pred Ccccccchhhh-cccc----ccceEEcCCCcCC-----CCcccccCCCcccEEeccCCccccc-CCC-----cccccccc
Q 008495 170 NKLTVLSNNLI-ASWT----MLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-PSS-----ISGCCSLA 233 (563)
Q Consensus 170 ~~i~~~~~~~~-~~~~----~L~~L~l~~~~l~-----~~~~~l~~~~~L~~L~l~~~~~~~~-~~~-----~~~~~~L~ 233 (563)
|.+.+.....+ ..++ +|++|++++|.++ .++..+..+++|++|++++|.+... +.. ....++|+
T Consensus 66 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 54443222111 1222 3555555555543 2344555666666666666665421 111 11244677
Q ss_pred eEEcCCCCCcc-----CchhhcCCCCCcEEEccCCcccccccccc-------ceeeeEEEcCCCCCCC-----CCccccC
Q 008495 234 EFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEIGK 296 (563)
Q Consensus 234 ~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~-------~~~L~~L~l~~~~~~~-----~~~~~~~ 296 (563)
+|++++|.+.. ++..+..+++|++|++++|.++....... ..+|++|++++|.++. ++..+..
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 77777776663 34456667778888887777664322211 1246666666666655 3445566
Q ss_pred CCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChh-
Q 008495 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE- 375 (563)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~- 375 (563)
+++|++|++++|.+...... .+...
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~------------------------------------------------------~l~~~~ 251 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMA------------------------------------------------------ELCPGL 251 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHH------------------------------------------------------HHHHHH
T ss_pred CCCccEEeccCCcCChHHHH------------------------------------------------------HHHHHH
Confidence 77777777777765321000 00011
Q ss_pred hhccCCccEEECCCCCCCc-----CCccccCCCCCcEEEcccCCCCCCChHHhhc-----CCCCCEEEcCCCCCcccC--
Q 008495 376 IWEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP-- 443 (563)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~l~~~~-- 443 (563)
...+++|++|++++|.++. ++..+..+++|+.|++++|.+++.....+.. .++|++|++++|.+....
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 1124556666666666554 4444555666666666666655433222221 246666666666655432
Q ss_pred --CcccCCCCcccEEeCCCccCCCCCCCCCC-----CCCCCCeEEcCCCccc-----ccchhhhccCCccEEEcCCCcCC
Q 008495 444 --SDGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 444 --~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~ 511 (563)
...+..+++|++|++++|.++..+...+. ..++|++|++++|.++ .++..+..+++|++|++++|.++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 12234445566666665555433222111 1455666666666555 34555555666666666666555
Q ss_pred ch-----hhhcc-CCCCCCEEECCCCCCC
Q 008495 512 SI-----PEGFK-NLTSLTELDLSDNNIS 534 (563)
Q Consensus 512 ~l-----~~~l~-~l~~L~~L~l~~n~l~ 534 (563)
.. .+.+. ...+|+.|.+.++.+.
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHHHHHhccCCcchhheeecccccC
Confidence 21 11121 2234555555555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.5e-29 Score=238.39 Aligned_cols=280 Identities=26% Similarity=0.363 Sum_probs=223.2
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCc-chh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~ 86 (563)
+.++.+++++++++++|..+. ++++.|++++|.+..++ ..|..+++|++|++++|.+..+ +..
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred ccCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 468889999999888887663 46899999999888774 5788999999999999988876 668
Q ss_pred hhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCCccc---cCccccccCCCc
Q 008495 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKM 162 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~L 162 (563)
|.++++|++|++++|.+..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.+. ..+..+..+ +|
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 8889999999999998888877665 789999999998887764 4788899999999998876 334456666 89
Q ss_pred cEEEecCCcccccchhhhccccccceEEcCCCcCCCCc-ccccCCCcccEEeccCCcccccCC-CcccccccceEEcCCC
Q 008495 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN 240 (563)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 240 (563)
++|++++|.++.++.... +.|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 175 ~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred CEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 999999998887765422 68889999999887765 568888899999999998886654 6788889999999999
Q ss_pred CCccCchhhcCCCCCcEEEccCCcccccccccc--------ceeeeEEEcCCCCCC--C-CCccccCCCCCcEEEcCCCc
Q 008495 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--------QLRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGNP 309 (563)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~--~-~~~~~~~~~~L~~L~l~~~~ 309 (563)
.+..+|..+..+++|++|++++|.++.++...+ ...++.+++.+|.+. . .+..+..+++|+.+++++|.
T Consensus 252 ~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999888888889999999999998887665433 234788899888876 3 34557788888888887763
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-30 Score=261.85 Aligned_cols=290 Identities=18% Similarity=0.213 Sum_probs=201.0
Q ss_pred hhcceeeCCCCcccccchH-HhhccccccCCCcccccccccEEEccCCCcc-----chhHhhcCCCCCcEEEcCCCCCCC
Q 008495 9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~~~~ 82 (563)
..+++||++++.++..+.. ++.. +++|++|++++|.++ .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 4678899999988754433 2443 678999999999888 456788889999999999998874
Q ss_pred c-ch-hhhcCC----CccEEEcCCCcCC-----CCCchhcccCCccEEEccCCCCCCC-ccc-----ccccCCCCeEecC
Q 008495 83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-PSS-----LGRCLNLSDFKAS 145 (563)
Q Consensus 83 l-~~-~~~~~~----~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-----~~~~~~L~~L~l~ 145 (563)
. +. .+..++ +|++|++++|.++ .++..+..+++|++|++++|.+... +.. ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 2 22 334455 6999999999887 3467788899999999999987632 111 1235679999999
Q ss_pred CCcccc-----CccccccCCCccEEEecCCcccccchhhhc-----cccccceEEcCCCcCCC-----CcccccCCCccc
Q 008495 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (563)
Q Consensus 146 ~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~ 210 (563)
+|.+.. ++..+..+++|++|++++|.+.......+. ..+.|++|++++|.++. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 998774 355677789999999999988755443333 24588899999888865 456677788888
Q ss_pred EEeccCCccccc------CCCcccccccceEEcCCCCCcc-----CchhhcCCCCCcEEEccCCcccccccccc------
Q 008495 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC------ 273 (563)
Q Consensus 211 ~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~------ 273 (563)
+|++++|.+... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++......
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 888888877632 1122347788888888888874 56667778888888888887764221111
Q ss_pred -ceeeeEEEcCCCCCCC-----CCccccCCCCCcEEEcCCCcc
Q 008495 274 -QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL 310 (563)
Q Consensus 274 -~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~ 310 (563)
..+|++|++++|.+++ ++..+..+++|++|++++|.+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 1245555555555544 223344455555555555544
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-29 Score=262.75 Aligned_cols=397 Identities=13% Similarity=0.079 Sum_probs=196.7
Q ss_pred hhHhhcCCCCCcEEEcCCCCCC----C------------cchhhhcCCCccEEEcCCCcCCC-CCchhcc-cCC-ccEEE
Q 008495 60 LKEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEIGS-ATA-LVKFD 120 (563)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~~~~----~------------l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~-~~~-L~~L~ 120 (563)
.+..+.++++|++|+++++... . ++.....+++|++|++++|.++. .+..+.. +++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3445667777888888765321 0 11122356777777777766552 2223333 333 77777
Q ss_pred ccCCCC-C--CCcccccccCCCCeEecCCCcccc-----CccccccCCCccEEEecCCcccccc----hhhhccccccce
Q 008495 121 CSSNQL-K--ELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTE 188 (563)
Q Consensus 121 l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~ 188 (563)
+++|.- . .++....++++|++|++++|.+.. ++.....+++|++|+++++.++.+. ...+..+++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 766641 1 122223456667777777665542 2223455666777777666655222 122345566666
Q ss_pred EEcCCCcCCCCcccccCCCcccEEeccCCccc----ccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCc
Q 008495 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (563)
Q Consensus 189 L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~ 264 (563)
|++++|.+..++..+..+++|++|+++++... ..+..+..+++|+.++++++....++..+..+++|++|++++|.
T Consensus 225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 66666666555555556666666666542211 22233444555555555554444444445555555555555544
Q ss_pred cccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccc
Q 008495 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (563)
Q Consensus 265 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (563)
++... +...+..+++|++|+++. .+...
T Consensus 305 l~~~~--------------------~~~~~~~~~~L~~L~L~~-~~~~~------------------------------- 332 (592)
T 3ogk_B 305 LETED--------------------HCTLIQKCPNLEVLETRN-VIGDR------------------------------- 332 (592)
T ss_dssp CCHHH--------------------HHHHHTTCTTCCEEEEEG-GGHHH-------------------------------
T ss_pred CCHHH--------------------HHHHHHhCcCCCEEeccC-ccCHH-------------------------------
Confidence 32111 112245666777776652 21100
Q ss_pred hhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCC----------C-CCCc--CCccccCCCCCcEEEcc
Q 008495 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR----------N-SIQE--LPPELSSCASLQTLILS 411 (563)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~l~~--l~~~l~~~~~L~~L~l~ 411 (563)
.++.....+++|++|++++ | .++. +......+++|+.|+++
T Consensus 333 --------------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 333 --------------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp --------------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred --------------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 0011122344455555552 2 2221 11122345566666665
Q ss_pred cCCCCCCChHHhhc-CCCCCEEEcC----CCCCcccCC-----cccCCCCcccEEeCCCcc--CCCCCCCCC-CCCCCCC
Q 008495 412 RNKIKDWPDAILTS-LSSLSCLKLD----NNPLRQVPS-----DGFKDIPMLQILDLSYNI--ASLPENPPF-SSLPHLQ 478 (563)
Q Consensus 412 ~~~~~~~~~~~~~~-~~~L~~L~L~----~~~l~~~~~-----~~~~~~~~L~~L~l~~n~--l~~~~~~~~-~~~~~L~ 478 (563)
.+.+++.....+.. +++|++|+++ .+.+++.+. ..+..+++|++|+++.|. ++......+ ..+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 55555433333333 5666666664 333433211 113345666666665432 222211111 2356666
Q ss_pred eEEcCCCcccc--cchhhhccCCccEEEcCCCcCC--chhhhccCCCCCCEEECCCCCCC
Q 008495 479 ELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 479 ~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~n~l~ 534 (563)
.|++++|+++. ++..+..+++|++|++++|.++ .++..+..+++|+.|++++|+++
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 66666666552 3333455666666666666655 23444455666666666666655
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.1e-26 Score=233.13 Aligned_cols=258 Identities=30% Similarity=0.370 Sum_probs=229.8
Q ss_pred hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhc
Q 008495 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (563)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (563)
.+++|++++++++.+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---L 99 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---C
T ss_pred CCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---C
Confidence 48899999999999998774 579999999999999876 67999999999999999886 7
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
+++|++|++++|.++.+|. .+++|+.|++++|.++.+|.. +++|++|++++|.+..++. ..++|+.|++++
T Consensus 100 l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN 170 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC
Confidence 8999999999999998876 678999999999999988864 4899999999999998864 357899999999
Q ss_pred CcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhh
Q 008495 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (563)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 249 (563)
|.++.++ ..+++|+.|++++|.+..+|.. .++|+.|++++|.+..++.. .++|+.|++++|.++.+|
T Consensus 171 N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 171 NQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp SCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---
T ss_pred CCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---
Confidence 9999877 4578999999999999988753 47899999999999988754 478999999999999887
Q ss_pred cCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCcccc
Q 008495 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (563)
Q Consensus 250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (563)
..+++|+.|++++|.++.++. ...+|+.|++++|.++.+|..+..+++|+.|++++|++..
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 566899999999999998877 4556999999999999999999999999999999998863
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.1e-25 Score=227.99 Aligned_cols=256 Identities=24% Similarity=0.261 Sum_probs=144.1
Q ss_pred cceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCcc
Q 008495 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (563)
Q Consensus 186 L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l 265 (563)
++.|+++++.++.+|..+. ++|+.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.+
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 4555555555555544333 455555555555555444 34555555555555555544 445555555555555
Q ss_pred ccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccch
Q 008495 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (563)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (563)
+.++. ...+|+.|++++|.++.+|.. +++|++|++++|.+..++.
T Consensus 114 ~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~------------------------------ 158 (622)
T 3g06_A 114 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA------------------------------ 158 (622)
T ss_dssp CCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC------------------------------
T ss_pred CCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC------------------------------
Confidence 55444 223355555555555555443 2556666666665543321
Q ss_pred hhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhc
Q 008495 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425 (563)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 425 (563)
....++.+++.++.+..++ ..+++|+.|++++|.++.+|.. .++|+.|++++|.++.++. .
T Consensus 159 ---------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~ 219 (622)
T 3g06_A 159 ---------LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----L 219 (622)
T ss_dssp ---------CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----C
T ss_pred ---------ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----C
Confidence 0122344444444444443 2345677777777776666542 3566777777776666543 2
Q ss_pred CCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEc
Q 008495 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505 (563)
Q Consensus 426 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 505 (563)
+++|++|++++|.++.++ ..+++|+.|++++|.++.+.. .+++|+.|++++|+++.+|..+..+++|+.|++
T Consensus 220 ~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 466777777777766655 244667777777776664432 456677777777777766666666777777777
Q ss_pred CCCcCC
Q 008495 506 SQNSLQ 511 (563)
Q Consensus 506 ~~~~l~ 511 (563)
++|.++
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 777666
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.3e-28 Score=253.98 Aligned_cols=409 Identities=14% Similarity=0.078 Sum_probs=262.0
Q ss_pred cccccEEEccCCCcc----------------chhHhhcCCCCCcEEEcCCCCCCCc-chhhhc-CCC-ccEEEcCCCc-C
Q 008495 44 AVDLQKLILAHNNIE----------------KLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGE-LHM-LKSLDVSFNS-I 103 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~----------------~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~-~~~-L~~L~l~~~~-l 103 (563)
+++|+.|+++++... .++.....+++|++|++++|.+... +..+.. +++ |++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 677999999875421 1233344789999999999987632 334443 344 9999999886 3
Q ss_pred C--CCCchhcccCCccEEEccCCCCCC-----CcccccccCCCCeEecCCCccc-----cCccccccCCCccEEEecCCc
Q 008495 104 M--KIPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNK 171 (563)
Q Consensus 104 ~--~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~ 171 (563)
. .++.....+++|++|++++|.++. ++.....+++|++|+++++.+. .++..+..+++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2 333445578999999999997753 2334567899999999999876 334456788999999999998
Q ss_pred ccccchhhhccccccceEEcCCCcC----CCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCc--cC
Q 008495 172 LTVLSNNLIASWTMLTELIASKNLL----NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--AL 245 (563)
Q Consensus 172 i~~~~~~~~~~~~~L~~L~l~~~~l----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l 245 (563)
+..+. ..+..+++|++|.++.... ......+..+++|+.++++++....++..+..+++|++|++++|.+. .+
T Consensus 232 ~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 232 ILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 88766 4488899999999985322 23345677889999999998776777788888999999999999876 33
Q ss_pred chhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCC-----------Ccccccc
Q 008495 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-----------NPLRTLR 314 (563)
Q Consensus 246 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~ 314 (563)
...+..+++|++|++.+ .+.+. +++.....+++|++|++++ +.++..
T Consensus 311 ~~~~~~~~~L~~L~L~~-~~~~~--------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~- 368 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRN-VIGDR--------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR- 368 (592)
T ss_dssp HHHHTTCTTCCEEEEEG-GGHHH--------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-
T ss_pred HHHHHhCcCCCEEeccC-ccCHH--------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHH-
Confidence 34468899999999983 33211 0122234456677776662 111000
Q ss_pred ccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCc
Q 008495 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394 (563)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 394 (563)
.+......+++|++|++..+.+++
T Consensus 369 --------------------------------------------------------~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 369 --------------------------------------------------------GLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp --------------------------------------------------------HHHHHHHHCTTCSEEEEEESCCCH
T ss_pred --------------------------------------------------------HHHHHHhhCccCeEEEeecCCccH
Confidence 011112335566666665555443
Q ss_pred -CCcccc-CCCCCcEEEcc----cCCCCCCC-----hHHhhcCCCCCEEEcCCCC--CcccCC-cccCCCCcccEEeCCC
Q 008495 395 -LPPELS-SCASLQTLILS----RNKIKDWP-----DAILTSLSSLSCLKLDNNP--LRQVPS-DGFKDIPMLQILDLSY 460 (563)
Q Consensus 395 -l~~~l~-~~~~L~~L~l~----~~~~~~~~-----~~~~~~~~~L~~L~L~~~~--l~~~~~-~~~~~~~~L~~L~l~~ 460 (563)
.+..+. .+++|+.|+++ .+.+++.+ ...+..+++|++|++++|. ++.... .....+++|+.|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 112222 25666777665 34555431 2234557777777776543 332111 1123466777777777
Q ss_pred ccCCCCCC-CCCCCCCCCCeEEcCCCcccc--cchhhhccCCccEEEcCCCcCCc--hhhhccCCCCCCEEECCCC
Q 008495 461 NIASLPEN-PPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 461 n~l~~~~~-~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~n 531 (563)
|.++..+. ..+..+++|+.|++++|.++. ++.....+++|+.|++++|.++. +......++.+....+..+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 76654321 123567788888888887652 33444567888888888888763 2222345676666655544
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.7e-26 Score=218.45 Aligned_cols=241 Identities=26% Similarity=0.339 Sum_probs=212.6
Q ss_pred ccccEEEccCCCcc---chhHhhcCCCCCcEEEcCC-CCCC-CcchhhhcCCCccEEEcCCCcCC-CCCchhcccCCccE
Q 008495 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (563)
Q Consensus 45 ~~l~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~ 118 (563)
.+++.|+++++.+. .+|..+..+++|++|++++ +.+. .+|..|.++++|++|++++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5888999999999999995 7776 67889999999999999999998 78889999999999
Q ss_pred EEccCCCCC-CCcccccccCCCCeEecCCCccc-cCccccccCC-CccEEEecCCcccccchhhhccccccceEEcCCCc
Q 008495 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (563)
Q Consensus 119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (563)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+.......+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 67888999999999999999998 7888899998 999999999999866666677777 9999999999
Q ss_pred CC-CCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCc-cCchhhcCCCCCcEEEccCCccc-cccccc
Q 008495 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272 (563)
Q Consensus 196 l~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~ 272 (563)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 86 4667788999999999999999866566888999999999999998 78889999999999999999998 455553
Q ss_pred cceeeeEEEcCCCC
Q 008495 273 CQLRLSVLDLSNNS 286 (563)
Q Consensus 273 ~~~~L~~L~l~~~~ 286 (563)
...+|+.+++++|.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 44458888898886
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=220.58 Aligned_cols=266 Identities=20% Similarity=0.286 Sum_probs=177.0
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCcc-hh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~ 86 (563)
....+.++++++++++|.++. ++|++|+++++.++.++. .+..+++|++|++++|.+..++ ..
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence 344557777777777777663 357888888887777654 6777888888888888777663 46
Q ss_pred hhcCCCccEEEcCCCcCCCCCch-hcccCCccEEEccCCCCCCCcc--cccccCCCCeEecCCC-ccccC-ccccccCCC
Q 008495 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSK 161 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~i-~~~l~~~~~ 161 (563)
|.++++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+.++++|++|++++| .+..+ +..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 77778888888888877777655 6777788888888877777665 5667777777777777 35544 345677777
Q ss_pred ccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc-cCCCcccEEeccCCcccccCCC----cccccccceEE
Q 008495 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFY 236 (563)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~ 236 (563)
|++|++++|.+..+....+..+++|++|++++|.++.++..+ ..+++|+.|++++|.+..++.. ......++.++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 777777777777665556777777777777777766655432 3356677777777766643211 12233444455
Q ss_pred cCCCCCc-----cCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCcc-ccCCCCCcEEEcCCCcc
Q 008495 237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL 310 (563)
Q Consensus 237 l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 310 (563)
++++.+. .+|..+..+++|++|+++ +|.++.++.. ++.+++|+++++++|++
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls----------------------~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFS----------------------RNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECC----------------------SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECC----------------------CCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 4444443 234445555555555554 4555555555 47888999999999987
Q ss_pred c
Q 008495 311 R 311 (563)
Q Consensus 311 ~ 311 (563)
.
T Consensus 314 ~ 314 (353)
T 2z80_A 314 D 314 (353)
T ss_dssp C
T ss_pred c
Confidence 5
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9e-26 Score=214.71 Aligned_cols=223 Identities=21% Similarity=0.270 Sum_probs=189.8
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
..+++.|+++++.++.+|..+..+++|++|++++|.+..+|..+.++++|++|++++|.+..+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 36789999999999988888888999999999999998888888899999999999999888888899999999999998
Q ss_pred CCCC-CCccccc---------ccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCC
Q 008495 124 NQLK-ELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (563)
Q Consensus 124 ~~~~-~~~~~~~---------~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 193 (563)
|.+. .+|..+. ++++|++|++++|.+..+|..+..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcC
Confidence 6554 5665554 48899999999999888888899999999999999998887665 88889999999999
Q ss_pred CcC-CCCcccccCCCcccEEeccCCccc-ccCCCcccccccceEEcCCCCCc-cCchhhcCCCCCcEEEccCCcccc
Q 008495 194 NLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE 267 (563)
Q Consensus 194 ~~l-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~ 267 (563)
|.+ +.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++++.+++..+.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 776 467778888999999999997655 77778888999999999997655 788889999999999888766543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=212.25 Aligned_cols=246 Identities=26% Similarity=0.311 Sum_probs=161.9
Q ss_pred EEEccCCccccccccccceeeeEEEcCCCCCCCCCcc-ccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCC
Q 008495 257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (563)
Q Consensus 257 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (563)
.++++++.++.+|.... .++++|++++|.++.++.. ++.+++|++|++++|.+..+.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------- 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------- 68 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence 34444444444443221 2355555666666665554 577788888888877664221
Q ss_pred CCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCC
Q 008495 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415 (563)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~ 415 (563)
..+..+..+++|++|++++|.+..++..+..+++|+.|++++|.+
T Consensus 69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence 112233455677777777777777766677777777777777777
Q ss_pred CCCCh-HHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCC-CCCCCCCCCCCCCeEEcCCCccccc-ch
Q 008495 416 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PT 492 (563)
Q Consensus 416 ~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~ 492 (563)
++.+. ..+..+++|++|++++|.+.......+..+++|++|++++|.++. ..+..+..+++|+.|++++|++..+ +.
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 66554 456677777777777777776666667777777777777777764 3455677777777777777777765 45
Q ss_pred hhhccCCccEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCCcCCC-CcccCcccCcEEEcCCCCccc
Q 008495 493 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP-ELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 493 ~~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~ 559 (563)
.+..+++|++|++++|.++.++. .+..+++|+.|++++|+++..++ .+..++++|+.|++++|+++.
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 66777777888887777776643 46777778888888887775444 333443477788888777753
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.2e-26 Score=213.83 Aligned_cols=242 Identities=23% Similarity=0.273 Sum_probs=167.4
Q ss_pred hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCc---ch
Q 008495 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PA 85 (563)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l---~~ 85 (563)
.-+.++|++++++++|.++. +++++|+++++.++.++. .|..+++|++|++++|.+..+ +.
T Consensus 8 ~~~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 8 SGTEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CCCEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 44678899999998888663 468899999998888875 478889999999999888755 56
Q ss_pred hhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcc--cccccCCCCeEecCCCccccC-ccccccCCCc
Q 008495 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKM 162 (563)
Q Consensus 86 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L 162 (563)
.+..+++|++|++++|.+..++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+ +..+..+++|
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 7777888888888888888787778888888888888888876653 566777777777777776643 3446677777
Q ss_pred cEEEecCCcccc-cchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCcccccCC-CcccccccceEEcCC
Q 008495 163 SKLDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN 239 (563)
Q Consensus 163 ~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 239 (563)
++|++++|.+.. .....+..+++|++|++++|.++.+ +..+..+++|++|++++|.+..++. .+..+++|++|++++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 777777777664 3333356666666666666666554 4455566666666666666655433 345556666666666
Q ss_pred CCCccC-chhhcCC-CCCcEEEccCCccc
Q 008495 240 NALSAL-PAELGKL-SKLGTLDLHSNQLK 266 (563)
Q Consensus 240 ~~~~~l-~~~l~~~-~~L~~L~l~~~~l~ 266 (563)
|.+... +..+..+ ++|++|++++|.+.
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 655532 3344444 25566665555544
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.4e-26 Score=216.37 Aligned_cols=241 Identities=22% Similarity=0.327 Sum_probs=208.3
Q ss_pred CCCcEEEcCCCCCC---CcchhhhcCCCccEEEcCC-CcCC-CCCchhcccCCccEEEccCCCCC-CCcccccccCCCCe
Q 008495 68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD 141 (563)
Q Consensus 68 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 141 (563)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 4788999999999999995 7776 77889999999999999999998 77888999999999
Q ss_pred EecCCCccc-cCccccccCCCccEEEecCCcccccchhhhcccc-ccceEEcCCCcCC-CCcccccCCCcccEEeccCCc
Q 008495 142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR 218 (563)
Q Consensus 142 L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~~~ 218 (563)
|++++|.+. .++..+..+++|++|++++|.+.......+..++ .|+.|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 6788899999999999999999854444578887 9999999999996 6777787776 9999999999
Q ss_pred cc-ccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccc-cccccccce-eeeEEEcCCCCCCC-CCccc
Q 008495 219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQL-RLSVLDLSNNSLSG-LPPEI 294 (563)
Q Consensus 219 ~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~-~L~~L~l~~~~~~~-~~~~~ 294 (563)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .++...... +|+.|++++|.+++ +|. .
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence 88 4566788899999999999999866666888999999999999998 455554444 49999999999987 555 4
Q ss_pred cCCCCCcEEEcCCCcc
Q 008495 295 GKMTTLRKLLLTGNPL 310 (563)
Q Consensus 295 ~~~~~L~~L~l~~~~~ 310 (563)
+.+++|+.+++++|+.
T Consensus 288 ~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTGGGSCGGGTCSSSE
T ss_pred ccccccChHHhcCCCC
Confidence 8889999999999973
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=7e-26 Score=215.43 Aligned_cols=224 Identities=21% Similarity=0.316 Sum_probs=202.6
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 88 (563)
..++.|++++++++.+|..+.+ +++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 6889999999999999988754 688999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEcCCCcC-CCCCchhcc---------cCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCcccccc
Q 008495 89 ELHMLKSLDVSFNSI-MKIPDEIGS---------ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l-~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~ 158 (563)
++++|++|++++|.+ ..+|..+.. +++|++|++++|.++.+|..+.++++|++|++++|.+..++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 999999999999754 467776654 9999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEecCCcccccchhhhccccccceEEcCCCcC-CCCcccccCCCcccEEeccCCccc-ccCCCcccccccceEE
Q 008495 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (563)
Q Consensus 159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~ 236 (563)
+++|++|++++|.+.......+..+++|+.|++++|.+ +.+|..+..+++|++|++++|.+. .+|..+..+++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999988766666699999999999999866 568888999999999999998765 8899999999999999
Q ss_pred cCCCCCccC
Q 008495 237 MGNNALSAL 245 (563)
Q Consensus 237 l~~~~~~~l 245 (563)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 998766544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=7.6e-26 Score=218.52 Aligned_cols=271 Identities=20% Similarity=0.211 Sum_probs=191.4
Q ss_pred cccccceEEcCCCCCccCchhhcCCCCCcEEEccCCcccccccc-cc-ceeeeEEEcCCCCCCCCC-ccccCCCCCcEEE
Q 008495 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE-AC-QLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLL 304 (563)
Q Consensus 228 ~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~~-~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 304 (563)
.|+.....+.+++.++.+|..+. ++|++|++++|.++.++.. .. ..+|++|++++|.+++++ ..++.+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 34555557777888887776543 4788888888877766542 22 223777777777666643 3466666777777
Q ss_pred cCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChh-hhccCCcc
Q 008495 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEIT 383 (563)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~ 383 (563)
+++|.++ .++.. +..+++|+
T Consensus 107 Ls~n~l~-----------------------------------------------------------~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 107 LSYNYLS-----------------------------------------------------------NLSSSWFKPLSSLT 127 (353)
T ss_dssp CCSSCCS-----------------------------------------------------------SCCHHHHTTCTTCS
T ss_pred CCCCcCC-----------------------------------------------------------cCCHhHhCCCccCC
Confidence 6666553 33333 45677888
Q ss_pred EEECCCCCCCcCCc--cccCCCCCcEEEcccC-CCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCC
Q 008495 384 KLDLSRNSIQELPP--ELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (563)
Q Consensus 384 ~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (563)
+|++++|.++.++. .+..+++|+.|++++| .+.......+..+++|++|++++|.+.+.....+..+++|++|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 88888888887765 5777888888888887 46666666677888888888888888877666688888888888888
Q ss_pred ccCCCCCCCCCCCCCCCCeEEcCCCcccccchh----hhccCCccEEEcCCCcCC-----chhhhccCCCCCCEEECCCC
Q 008495 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 461 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~n 531 (563)
|.++......+..+++|+.|++++|++...+.. ....+.++.++++++.+. .+|+.+..+++|+.|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 877554433344578888888888877754321 224566777777777665 46777888889999999999
Q ss_pred CCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 532 NISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 532 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
+++.+|..++..+++|+.|++++|+++.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 8888888765444889999999988754
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.2e-28 Score=251.58 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=80.5
Q ss_pred ccCCccEEECCCCCCCcC-Cccc-cCCCCCcEEEcc--c----CCCCCCCh-----HHhhcCCCCCEEEcCCCCCcccCC
Q 008495 378 EAGEITKLDLSRNSIQEL-PPEL-SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPS 444 (563)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l-~~~l-~~~~~L~~L~l~--~----~~~~~~~~-----~~~~~~~~L~~L~L~~~~l~~~~~ 444 (563)
.+++|+.|.+.++.++.. ...+ ..+++|+.|+++ + +.+++.+. ..+..+++|++|++++ .+.+...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 366777776666555541 1122 246677777776 3 34443221 1245567777777765 3433222
Q ss_pred cccCC-CCcccEEeCCCccCCCCCCCCC-CCCCCCCeEEcCCCccccc--chhhhccCCccEEEcCCCcCCch-hhhc-c
Q 008495 445 DGFKD-IPMLQILDLSYNIASLPENPPF-SSLPHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSI-PEGF-K 518 (563)
Q Consensus 445 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~l~~l-~~~l-~ 518 (563)
..+.. +++|+.|++++|.++..+...+ ..+++|+.|++++|.++.. ......+++|+.|++++|.++.- ...+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 22222 5667777777766644333222 4466777777777766421 12233466777777777766411 1112 4
Q ss_pred CCCCCCEEECCCC
Q 008495 519 NLTSLTELDLSDN 531 (563)
Q Consensus 519 ~l~~L~~L~l~~n 531 (563)
.++.|+...+.++
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 4566665555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.7e-25 Score=209.23 Aligned_cols=218 Identities=25% Similarity=0.367 Sum_probs=146.8
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCc-chhhhc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~ 89 (563)
.+++|++++++++|.++. +++++|+++++.++.++ ..|..+++|++|++++|.+..+ +..|..
T Consensus 14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCCC---------------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 568888888888887663 46888888888888776 4688888888888888888876 557788
Q ss_pred CCCccEEEcCCCc-CCCC-CchhcccCCccEEEccCCCCCCC-cccccccCCCCeEecCCCccccCccc-cccCCCccEE
Q 008495 90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (563)
Q Consensus 90 ~~~L~~L~l~~~~-l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L 165 (563)
+++|++|++++|. +..+ +..+..+++|++|++++|.++.+ +..+.++++|++|++++|.+..++.. +..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 8888888888886 7766 56677788888888888887765 35566677777777777777665543 6666777777
Q ss_pred EecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccC
Q 008495 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (563)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 245 (563)
++++|.++.++...+..+++|+.|++++|.+..+ .+..+..+++|+.|++++|.+..+
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV----------------------HPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCccccc----------------------CHhHccCcccccEeeCCCCcCCcC
Confidence 7777766666555455555555555555555433 133444444555555555555444
Q ss_pred ch-hhcCCCCCcEEEccCCccc
Q 008495 246 PA-ELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 246 ~~-~l~~~~~L~~L~l~~~~l~ 266 (563)
+. .+..+++|+.|++++|.+.
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHcccCcccCEEeccCCCcc
Confidence 32 3555555555555555544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.4e-24 Score=213.31 Aligned_cols=243 Identities=24% Similarity=0.306 Sum_probs=192.2
Q ss_pred cEEEccCCccccccccccceeeeEEEcCCCCCCCC-CccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCC
Q 008495 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334 (563)
Q Consensus 256 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (563)
..++..+..++.+|... +..++.|++++|.++.+ +..+..+++|++|++++|.+..++
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------------- 115 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-------------------- 115 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--------------------
Confidence 34444444444444322 23456666666666663 445788888999988888775432
Q ss_pred CCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcc-ccCCCCCcEEEcccC
Q 008495 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 413 (563)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~ 413 (563)
+..+..+++|++|++++|.++.++.. +..+++|+.|++++|
T Consensus 116 --------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 116 --------------------------------------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp --------------------------------------TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred --------------------------------------hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 12345677899999999998887654 778999999999999
Q ss_pred CCCCCChHHhhcCCCCCEEEcCC-CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-c
Q 008495 414 KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-P 491 (563)
Q Consensus 414 ~~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~ 491 (563)
.+..++...+..+++|++|++++ +.+..++...|..+++|++|++++|.++.. ..+..+++|+.|++++|++..+ +
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCc
Confidence 99988888889999999999998 556667777789999999999999998876 3578899999999999999866 6
Q ss_pred hhhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 492 TDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 6788999999999999999976 5668899999999999999999988776656899999999998753
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.7e-24 Score=212.33 Aligned_cols=241 Identities=24% Similarity=0.335 Sum_probs=180.2
Q ss_pred EEEccCCccccccccccceeeeEEEcCCCCCCCCC-ccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCC
Q 008495 257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (563)
Q Consensus 257 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (563)
.++..+..++.+|.... ..++.|++++|.+..++ ..+..+++|++|++++|.+..++.
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-------------------- 105 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-------------------- 105 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG--------------------
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh--------------------
Confidence 34444444444443221 23555555555555533 457778888888888887643321
Q ss_pred CCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCC
Q 008495 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK 414 (563)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~ 414 (563)
..+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 106 --------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 106 --------------------------------------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp --------------------------------------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred --------------------------------------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence 234556788888888888888765 47788889999999888
Q ss_pred CCCCChHHhhcCCCCCEEEcCC-CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-ch
Q 008495 415 IKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PT 492 (563)
Q Consensus 415 ~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~ 492 (563)
+..++...+..+++|++|++++ +.+..++...|..+++|++|++++|.++... .+..+++|+.|++++|++..+ +.
T Consensus 148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTT
T ss_pred ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChh
Confidence 8888777788888999999988 4556677767888899999999998887653 478888899999999988866 56
Q ss_pred hhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCcc
Q 008495 493 DILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 493 ~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
.+..+++|++|++++|.++.+ +..|..+++|+.|+|++|+++.+++..+..+++|+.|++++|++.
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 778888999999999988876 455888899999999999998888877665588999999998875
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.3e-27 Score=245.52 Aligned_cols=424 Identities=14% Similarity=0.140 Sum_probs=255.1
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCcc-c---------------hhHhhcCCCCCcEEEc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-K---------------LKEDLRNLPLLTVLNV 75 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~---------------l~~~~~~~~~L~~L~l 75 (563)
..++++++.. ..|..+++. +++|+.|++.++... . ++.....+++|++|++
T Consensus 46 ~~l~~~~~~~-~~~~~~~~~------------~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L 112 (594)
T 2p1m_B 46 RKVFIGNCYA-VSPATVIRR------------FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL 112 (594)
T ss_dssp CEEEESSTTS-SCHHHHHHH------------CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE
T ss_pred eEEeeccccc-cCHHHHHhh------------CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe
Confidence 3455544432 245555554 566888888776421 1 1233456788888888
Q ss_pred CCCCCCCc-chhhh-cCCCccEEEcCCC-cCCC--CCchhcccCCccEEEccCCCCCC-----CcccccccCCCCeEecC
Q 008495 76 SHNKLSEL-PAAIG-ELHMLKSLDVSFN-SIMK--IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKAS 145 (563)
Q Consensus 76 ~~~~~~~l-~~~~~-~~~~L~~L~l~~~-~l~~--~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~ 145 (563)
++|.+... +..+. .+++|++|++++| .++. ++..+.++++|++|++++|.++. ++.....+++|++|+++
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS 192 (594)
T ss_dssp ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECT
T ss_pred eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEec
Confidence 88876632 23443 5788888888887 4542 44455578888888888887653 22233466788888888
Q ss_pred CCc--cc--cCccccccCCCccEEEecCC-cccccchhhhccccccceEEcCCCc-------CCCCcccccCCCcccEE-
Q 008495 146 NNC--IT--SLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRL- 212 (563)
Q Consensus 146 ~~~--~~--~i~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~l~~~~~L~~L- 212 (563)
++. +. .+......+++|++|++++| .+.. ....+..+++|+.|.++.+. +..++..+..+++|+.+
T Consensus 193 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls 271 (594)
T 2p1m_B 193 CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271 (594)
T ss_dssp TCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred ccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc
Confidence 775 21 12222455788888888877 4444 33346777888888865443 33445567788888888
Q ss_pred eccCCcccccCCCcccccccceEEcCCCCCcc--CchhhcCCCCCcEEEccCCccccc--cccc-cceeeeEEEcCC---
Q 008495 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLHSNQLKEY--CVEA-CQLRLSVLDLSN--- 284 (563)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~l~~~--~~~~-~~~~L~~L~l~~--- 284 (563)
.+.+.....++..+..+++|++|++++|.+.. +...+..+++|++|++.+| +.+. .... ...+|++|++.+
T Consensus 272 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp CCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred CCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence 55554444555555678889999999888662 3344668889999999887 3321 1111 112355565522
Q ss_pred ------CCCCC--CCccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccc
Q 008495 285 ------NSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (563)
Q Consensus 285 ------~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (563)
+.+++ +......+++|++|.+..+.++.
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-------------------------------------------- 386 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-------------------------------------------- 386 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH--------------------------------------------
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH--------------------------------------------
Confidence 12222 11111235555555544443321
Q ss_pred cccceeecCCCCCCcCChhh-hccCCccEEECC--C----CCCCcCC------ccccCCCCCcEEEcccCCCCCCChHHh
Q 008495 357 VTSKELSLEGMNLSAIPSEI-WEAGEITKLDLS--R----NSIQELP------PELSSCASLQTLILSRNKIKDWPDAIL 423 (563)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~l~~l~------~~l~~~~~L~~L~l~~~~~~~~~~~~~ 423 (563)
.....+ ..+++|+.|+++ + +.++..| ..+..+++|+.|++++ .+++.....+
T Consensus 387 --------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 387 --------------AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp --------------HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred --------------HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 011112 246677777777 2 3454322 1245678888888877 5665444444
Q ss_pred hc-CCCCCEEEcCCCCCcccCCccc-CCCCcccEEeCCCccCCCCCCC-CCCCCCCCCeEEcCCCcccc-cchhh-hccC
Q 008495 424 TS-LSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRMQLRE-APTDI-LRLQ 498 (563)
Q Consensus 424 ~~-~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~-~~~~ 498 (563)
.. +++|++|++++|.+++.....+ ..+++|++|++++|.++..+.. ....+++|+.|++++|+++. ....+ ..++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 44 7888888888888765333223 5678888888888887543322 23457899999999998752 11223 4567
Q ss_pred CccEEEcCCCc
Q 008495 499 QLRILDLSQNS 509 (563)
Q Consensus 499 ~L~~L~l~~~~ 509 (563)
.|+...+..+.
T Consensus 532 ~l~i~~~~~~~ 542 (594)
T 2p1m_B 532 KLNVEVIDERG 542 (594)
T ss_dssp TEEEEEECSSS
T ss_pred CCEEEEecCCC
Confidence 77776666553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=214.82 Aligned_cols=239 Identities=24% Similarity=0.356 Sum_probs=183.5
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcc-hhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (563)
...++|++++++++|.++. ++++.|++++|.+..++ ..|..+++|++|++++|.+..++ ..|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 4578888888888888774 46888888888888765 57888888888888888888764 4788
Q ss_pred cCCCccEEEcCCCcCCCCCc-hhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCC-ccccCcc-ccccCCCccE
Q 008495 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~ 164 (563)
++++|++|++++|.++.++. .|..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 88888888888888887755 57788888888888888886653 6777888888888874 4444543 4777888888
Q ss_pred EEecCCcccccchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCccccc-CCCcccccccceEEcCCCCC
Q 008495 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (563)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 242 (563)
|++++|.++.++. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 8888888887764 77778888888888887665 55677788888888888887755 44667778888888888887
Q ss_pred ccCch-hhcCCCCCcEEEccCCccc
Q 008495 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~~~l~ 266 (563)
..++. .+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 76654 4567778888888877764
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3e-24 Score=214.49 Aligned_cols=239 Identities=24% Similarity=0.337 Sum_probs=186.8
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCcc-hhhh
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~ 88 (563)
...++|++++++++|.++. ++++.|++++|.+..+ +..|..+++|+.|++++|.+..++ ..|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 4578888888888887763 4688888988888866 467888888999999888888764 4788
Q ss_pred cCCCccEEEcCCCcCCCCCch-hcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCC-ccccCcc-ccccCCCccE
Q 008495 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (563)
Q Consensus 89 ~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~ 164 (563)
++++|++|++++|.+..++.. |..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|++
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 888888888888888877544 7778888888888888887653 6778888888888884 4445543 4778888888
Q ss_pred EEecCCcccccchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCccccc-CCCcccccccceEEcCCCCC
Q 008495 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (563)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 242 (563)
|++++|.+..++. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 201 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 201 LNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 8888888887754 77788888888888888765 56677888888888888888755 45677788888888888888
Q ss_pred ccCch-hhcCCCCCcEEEccCCccc
Q 008495 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~~~l~ 266 (563)
..++. .+..+++|+.|++++|.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 86654 4567788888888887765
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=8e-24 Score=197.85 Aligned_cols=158 Identities=29% Similarity=0.415 Sum_probs=93.1
Q ss_pred hccCCccEEECCCCC-CCcC-CccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCccc
Q 008495 377 WEAGEITKLDLSRNS-IQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~-l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 454 (563)
..+++|++|++++|. ++.+ +..+..+++|+.|++++|.++......+..+++|++|++++|.+..++...+..+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 345566666666664 5554 34455666666666666666665555555666666666666666655555556666666
Q ss_pred EEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchh-hhccCCCCCCEEECCCCC
Q 008495 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNN 532 (563)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~n~ 532 (563)
+|++++|.++......+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|+
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 666666666555544555666666666666665544 445555666666666666666554 235556666666666665
Q ss_pred CC
Q 008495 533 IS 534 (563)
Q Consensus 533 l~ 534 (563)
+.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.2e-25 Score=207.20 Aligned_cols=236 Identities=22% Similarity=0.283 Sum_probs=168.2
Q ss_pred cceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcchhhhc
Q 008495 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (563)
Q Consensus 11 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (563)
+...+++.+.+.+++..++.. +++|++|++++|.++.++ ..+..+++|++|++++|.+..++. +..
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 78 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence 455666666666666666554 567888888888888664 578888888888888888776544 777
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCcc-ccccCCCccEEEec
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVE 168 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~ 168 (563)
+++|++|++++|.++.++ ..++|++|++++|.++.++.. .+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 888888888888776554 347788888888877755432 35678888888887776643 56777788888888
Q ss_pred CCcccccchhhh-ccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCch
Q 008495 169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (563)
Q Consensus 169 ~~~i~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~ 247 (563)
+|.+..+....+ ..++.|++|++++|.++.++. ...+++|++|++++|.+..++..+..+++|++|++++|.+..+|.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 887776655444 356777777777777766643 234677777777777777776667777777777777777777776
Q ss_pred hhcCCCCCcEEEccCCccc
Q 008495 248 ELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 248 ~l~~~~~L~~L~l~~~~l~ 266 (563)
.+..+++|+.|++++|.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 6777777777777777665
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.9e-25 Score=210.19 Aligned_cols=198 Identities=18% Similarity=0.193 Sum_probs=94.6
Q ss_pred CCCCCcEEEcCCCCCC-Ccchhh--hcCCCccEEEcCCCcCCCCCchhccc-----CCccEEEccCCCCCCCc-cccccc
Q 008495 66 NLPLLTVLNVSHNKLS-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRC 136 (563)
Q Consensus 66 ~~~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~ 136 (563)
.+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..++ ..+.++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4555555555555554 334333 45555555555555555444444444 55555555555555443 444555
Q ss_pred CCCCeEecCCCcccc---Ccccc--ccCCCccEEEecCCccc---ccchhhhccccccceEEcCCCcCCCCc--ccccCC
Q 008495 137 LNLSDFKASNNCITS---LPEDL--ADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMP--ETIGSL 206 (563)
Q Consensus 137 ~~L~~L~l~~~~~~~---i~~~l--~~~~~L~~L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~l~~~ 206 (563)
++|++|++++|.+.. ++..+ ..+++|++|++++|.++ .+....+..+++|++|++++|.+...+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 555555555554331 12222 44555555555555554 222222334455555555555554322 223334
Q ss_pred CcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccc
Q 008495 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
++|++|++++|.+..+|..+. ++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 455555555555554444433 445555555555554433 444444555544444443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.7e-23 Score=189.67 Aligned_cols=200 Identities=30% Similarity=0.424 Sum_probs=180.3
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
..+.+++++..+..+|..+. +.+++|++++|.++.++. .+..+++|+.|++++|.++.++...+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45789999999988887553 689999999999999775 688999999999999999999988889999999999999
Q ss_pred CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhh
Q 008495 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (563)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~ 515 (563)
|.+..++...+..+++|++|++++|.++...+..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.+|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 999999888899999999999999999998888899999999999999999988765 6889999999999999998865
Q ss_pred -hccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 516 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
.+..+++|+.|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 48899999999999999999998766555999999999999854
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-24 Score=206.29 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=208.9
Q ss_pred HHHHhhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCc
Q 008495 4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (563)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l 83 (563)
+.+.+.++++|++++++++.++.+.+.. +++|++|++++|.+..++. +..+++|++|++++|.++.+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTT------------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhC------------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc
Confidence 4455678999999999999998877765 7889999999999987654 99999999999999998877
Q ss_pred chhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCccccCc-ccc-ccCC
Q 008495 84 PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDL-ADCS 160 (563)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~-~~l-~~~~ 160 (563)
+ ..++|++|++++|.+..++. ..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++ ..+ ..++
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred c----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 5 34899999999999987653 34788999999999999775 47888999999999999998653 344 4789
Q ss_pred CccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCC
Q 008495 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (563)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (563)
+|++|++++|.++.++. ...+++|++|++++|.++.++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 99999999999998854 4458999999999999999988899999999999999999999999999999999999999
Q ss_pred CCc--cCchhhcCCCCCcEEEccCC
Q 008495 241 ALS--ALPAELGKLSKLGTLDLHSN 263 (563)
Q Consensus 241 ~~~--~l~~~l~~~~~L~~L~l~~~ 263 (563)
.+. .++.++..+++|+.+++.++
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECCCc
Confidence 998 66788899999999888754
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.6e-25 Score=207.69 Aligned_cols=245 Identities=18% Similarity=0.197 Sum_probs=139.1
Q ss_pred ccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCC--Ccchhhh-------cCCCccEEEcCCCcCC-CCCchh
Q 008495 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPDEI 110 (563)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~l~-~~~~~~ 110 (563)
+...++|+.++++++.+ .+|..+... |+.|+++++.+. .++..+. ++++|++|++++|.+. .+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 33455566666666666 555544433 666666666554 2333333 4566666666666655 344443
Q ss_pred --cccCCccEEEccCCCCCCCccccccc-----CCCCeEecCCCccccCc-cccccCCCccEEEecCCcccccchhhhcc
Q 008495 111 --GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIAS 182 (563)
Q Consensus 111 --~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 182 (563)
..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++++|.+.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-----
Confidence 55666666666666665555444444 55555555555555443 345555555555555554332100
Q ss_pred ccccceEEcCCCcCCCCcccc--cCCCcccEEeccCCcccccC---C-CcccccccceEEcCCCCCccCc--hhhcCCCC
Q 008495 183 WTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIP---S-SISGCCSLAEFYMGNNALSALP--AELGKLSK 254 (563)
Q Consensus 183 ~~~L~~L~l~~~~l~~~~~~l--~~~~~L~~L~l~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~ 254 (563)
++..+ ..+++|++|++++|.+..++ . .+..+++|++|++++|.+...+ ..+..+++
T Consensus 191 ----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 191 ----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp ----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred ----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 11112 44455555555555554221 1 1234456666666666665432 23445567
Q ss_pred CcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcCCCccc
Q 008495 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311 (563)
Q Consensus 255 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (563)
|++|++++|.++.++.... .+|++|++++|+++++|. +..+++|+++++++|+++
T Consensus 255 L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 7777777777776665555 568888888888887755 778888888888888775
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.5e-23 Score=191.18 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=171.2
Q ss_pred ceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCCcch-hhhc
Q 008495 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (563)
Q Consensus 12 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~ 89 (563)
..++|++.+++++|..+. +++++|+++++.++.++. .|..+++|++|++++|.+..++. .|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 368899999999998773 469999999999998765 79999999999999999998765 7899
Q ss_pred CCCccEEEcCCCcCCCCC-chhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCCCcccc--CccccccCCCccEE
Q 008495 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L 165 (563)
+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++++|.+.. ++..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999998664 678899999999999999987764 68889999999999999886 67789999999999
Q ss_pred EecCCcccccchhhhccccccc----eEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCC-cccccccceEEcCCC
Q 008495 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (563)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 240 (563)
++++|.++.+....+..+..++ .+++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9999999888776677776666 66677776666554444444666666666666555432 344555555555555
Q ss_pred CCc
Q 008495 241 ALS 243 (563)
Q Consensus 241 ~~~ 243 (563)
.+.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-23 Score=206.68 Aligned_cols=233 Identities=21% Similarity=0.255 Sum_probs=178.8
Q ss_pred CCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-HhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccE
Q 008495 17 SNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKS 95 (563)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 95 (563)
+......+|..+..... .+++|+.|++++|.+..++ ..|..+++|++|++++|.+..++. +..+++|++
T Consensus 15 ~~~~~~~l~~~l~~l~~---------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~ 84 (487)
T 3oja_A 15 EKVTDSSLKQALASLRQ---------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRT 84 (487)
T ss_dssp ESCCTTTHHHHHHTTST---------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCE
T ss_pred ccCchhhhHHHHHHhcc---------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCE
Confidence 33334456666654322 2568899999998888664 678888999999999988876544 888888999
Q ss_pred EEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccC-ccccccCCCccEEEecCCcccc
Q 008495 96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTV 174 (563)
Q Consensus 96 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~ 174 (563)
|++++|.++.++. .++|++|++++|.++.++.. .+++|++|++++|.+..+ +..+..+++|++|++++|.++.
T Consensus 85 L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 85 LDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred EEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 9999888876543 37888999998888866532 457888888888888866 4467888888888888888887
Q ss_pred cchhhhc-cccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCC
Q 008495 175 LSNNLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLS 253 (563)
Q Consensus 175 ~~~~~~~-~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~ 253 (563)
.....+. .++.|+.|++++|.++.++. ...+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred cChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence 6555454 67888888888888877644 335788888888888888877778888888888888888888887788888
Q ss_pred CCcEEEccCCccc
Q 008495 254 KLGTLDLHSNQLK 266 (563)
Q Consensus 254 ~L~~L~l~~~~l~ 266 (563)
+|+.|++++|.+.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 8888888888776
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.8e-22 Score=186.36 Aligned_cols=184 Identities=29% Similarity=0.327 Sum_probs=138.5
Q ss_pred hhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCccc
Q 008495 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (563)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 454 (563)
+..+++|++|++++|.++.++. .+..+++|+.|++++|.++......+..+++|++|++++|.+..++...+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 4456677777777777776543 567778888888888888777766677888888888888888877766678888888
Q ss_pred EEeCCCccCCCCC-CCCCCCCCCCCeEEcCCCcccccc-hhhhccCCcc----EEEcCCCcCCchhhhccCCCCCCEEEC
Q 008495 455 ILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR----ILDLSQNSLQSIPEGFKNLTSLTELDL 528 (563)
Q Consensus 455 ~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~----~L~l~~~~l~~l~~~l~~l~~L~~L~l 528 (563)
+|++++|.++... +..+..+++|+.|++++|+++.++ ..+..++.|+ +|++++|.++.++.......+|++|++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence 8888888887653 566778888888888888887654 3455555555 788888888877665555568888888
Q ss_pred CCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 529 SDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 529 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
++|+++.+|+..+..+++|+.|++++|+++.
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCceeecCHhHhcccccccEEEccCCcccc
Confidence 8888888887765545888888888888753
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-23 Score=209.25 Aligned_cols=234 Identities=24% Similarity=0.253 Sum_probs=138.1
Q ss_pred cccccceEEcCCCCCccCc-hhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCCCCcEEEcC
Q 008495 228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (563)
Q Consensus 228 ~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 306 (563)
.+++|+.|++++|.+..++ ..+..+++|++|++++|.++..+. ++.+++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------l~~l~~L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----------------------LESLSTLRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----------------------CTTCTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----------------------cccCCCCCEEEec
Confidence 4457888888888777654 467777777777777777654322 4556666666666
Q ss_pred CCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEE
Q 008495 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (563)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (563)
+|.++.++ ..++|+.|+
T Consensus 89 ~N~l~~l~---------------------------------------------------------------~~~~L~~L~ 105 (487)
T 3oja_A 89 NNYVQELL---------------------------------------------------------------VGPSIETLH 105 (487)
T ss_dssp SSEEEEEE---------------------------------------------------------------ECTTCCEEE
T ss_pred CCcCCCCC---------------------------------------------------------------CCCCcCEEE
Confidence 66553221 113555555
Q ss_pred CCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccC-CCCcccEEeCCCccCCC
Q 008495 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASL 465 (563)
Q Consensus 387 l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~L~~L~l~~n~l~~ 465 (563)
+++|.++.++. ..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.....+. .+++|++|++++|.++.
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55555555432 2345566666666666665555555566666666666666654333343 55666666666666554
Q ss_pred CCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCC--cCCCCcccC
Q 008495 466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--ALPPELGLL 543 (563)
Q Consensus 466 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~ 543 (563)
.. ....+++|+.|++++|.++.++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++. .+|..+..+
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 42 23346666666666666666665666666666666666666666666666666666666666665 333323332
Q ss_pred cccCcEEEc
Q 008495 544 EPSLQALRL 552 (563)
Q Consensus 544 ~~~L~~L~l 552 (563)
+.|+.+++
T Consensus 262 -~~L~~l~~ 269 (487)
T 3oja_A 262 -QRVQTVAK 269 (487)
T ss_dssp -HHHHHHHH
T ss_pred -CCCcEEec
Confidence 45555544
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=6.1e-22 Score=186.60 Aligned_cols=195 Identities=22% Similarity=0.320 Sum_probs=107.6
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344555555555555554 35555555555555555555544 555555555555555555442 344555555555555
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l 203 (563)
|.++.++. +..+++|++|++++|.+..+.. +..+++|+.|++++|.+..++. +
T Consensus 117 n~l~~~~~------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l 169 (308)
T 1h6u_A 117 TQITDVTP------------------------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-L 169 (308)
T ss_dssp SCCCCCGG------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh------------------------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-h
Confidence 55544432 4444455555555554444433 4445555555555555544443 5
Q ss_pred cCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccc
Q 008495 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270 (563)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 270 (563)
..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.++..+.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 555666666666666655543 5566667777777776666553 6667777777777777665443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.4e-22 Score=184.95 Aligned_cols=197 Identities=27% Similarity=0.366 Sum_probs=100.3
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccch-hHhhcCCCCCcEEEcCCCCCCCcchhh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~ 87 (563)
..+++++|++++++++|.++. ++++.|++++|.+..+ +..|..+++|+.|++++|.++.++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred CCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 345555555555555555442 2355555555555544 23455555555555555555544332
Q ss_pred hcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEe
Q 008495 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (563)
Q Consensus 88 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l 167 (563)
..+++|++|++++|.+..+|..+..+++|++|++++|+++.++. ..|..+++|++|++
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----------------------~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----------------------GALRGLGELQELYL 131 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----------------------STTTTCTTCCEEEC
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH----------------------HHHcCCCCCCEEEC
Confidence 44555555555555555555555555555555555555554431 22444444555555
Q ss_pred cCCcccccchhhhccccccceEEcCCCcCCCCccc-ccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCc
Q 008495 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (563)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (563)
++|.++.++...+..+++|+.|++++|.++.++.. +..+++|+.|++++|++..+|..+...++|+.+++++|.+.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 44444444444444445555555555555444432 33455555555555555555555555555555555555444
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=182.41 Aligned_cols=201 Identities=22% Similarity=0.268 Sum_probs=162.7
Q ss_pred hcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCcccccccCCCCeE
Q 008495 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (563)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 142 (563)
++++++++.+++++++++.+|..+. +++++|++++|.+..+ +..+..+++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4556666677776666666665443 5667777777766644 34566677777777777777665433 567788888
Q ss_pred ecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCccc-ccCCCcccEEeccCCcccc
Q 008495 143 KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILS 221 (563)
Q Consensus 143 ~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~ 221 (563)
++++|.+..++..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|+.|++++|++..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888888888887888899999999999999999888899999999999999999887654 6789999999999999998
Q ss_pred cCCC-cccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCcccc
Q 008495 222 IPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (563)
Q Consensus 222 ~~~~-~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 267 (563)
++.. +..+++|+.|++++|.+..+|..+....+|+.+++++|.+..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 8764 578999999999999999999999999999999999998763
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=184.50 Aligned_cols=197 Identities=18% Similarity=0.306 Sum_probs=150.8
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344455555555444443 34445555555555555554443 555555666666666555553 577888999999999
Q ss_pred CcccccchhhhccccccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhh
Q 008495 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (563)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 249 (563)
|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +
T Consensus 117 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-h
Confidence 99888765 8999999999999999988876 8889999999999999998766 8899999999999999998875 8
Q ss_pred cCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccc
Q 008495 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI 294 (563)
Q Consensus 250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 294 (563)
..+++|++|++++|.++.++......+|+.|++++|.++..+..+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred cCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCeee
Confidence 899999999999999998876555556999999999988765543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.6e-21 Score=175.17 Aligned_cols=158 Identities=32% Similarity=0.508 Sum_probs=99.3
Q ss_pred hccCCccEEECCCCCCCcCCcc-ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccE
Q 008495 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 455 (563)
..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..++...|..+++|++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 3455566666666666555443 355666666666666666666555666666666666666666666555666666666
Q ss_pred EeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCCCC
Q 008495 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533 (563)
Q Consensus 456 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l 533 (563)
|++++|.++......+..+++|+.|++++|++..++.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 66666666665555566666666666666666655443 55666666666666666665443 56666677777766665
Q ss_pred C
Q 008495 534 S 534 (563)
Q Consensus 534 ~ 534 (563)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 4
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.7e-21 Score=173.74 Aligned_cols=175 Identities=31% Similarity=0.437 Sum_probs=100.2
Q ss_pred ccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
.++++++++.++.+|..+. ++++.|++++|++.......+..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4455555555555554433 45566666666665555555555666666666666665555555555666666666666
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCCcCCCC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPE 539 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~ 539 (563)
.++...+..+..+++|++|++++|+++.++.. +..+++|++|++++|.++.+|. .+..+++|+.|++++|+++.+++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 66555555555566666666666666555443 3455666666666666665543 355566666666666666655554
Q ss_pred cccCcccCcEEEcCCCCcc
Q 008495 540 LGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 540 ~~~~~~~L~~L~l~~~~~~ 558 (563)
.+..+++|+.|++++|++.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 3333356666666666554
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.6e-21 Score=177.10 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCcEEEcCCCCCCCcch-hhhcCCCccEEEcCCCc-CCCCCc-hhcccCCccEEEccC-CCCCCCc-ccccccCCCCeEe
Q 008495 69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK 143 (563)
Q Consensus 69 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~ 143 (563)
+|+.|+++++.++.++. .|.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.++ ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555554444433 34444555555555553 443332 344455555555554 4454443 2344555555555
Q ss_pred cCCCccccCccccccCCCcc---EEEecCC-cccccchhhhccccccc-eEEcCCCcCCCCcccccCCCcccEEeccCCc
Q 008495 144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (563)
Q Consensus 144 l~~~~~~~i~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~ 218 (563)
+++|.+..++. +..+++|+ +|++++| .+..++...+..+++|+ .|++++|.++.++......++|+.|++++|+
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 55555555443 45555555 6666666 66666665566666666 6666666666655443333667777777774
Q ss_pred -ccccC-CCcccc-cccceEEcCCCCCccCchhhcCCCCCcEEEccCC
Q 008495 219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (563)
Q Consensus 219 -~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 263 (563)
+..++ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|++.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 66553 345566 6777777777777766554 5667777776654
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=3.1e-20 Score=171.83 Aligned_cols=180 Identities=31% Similarity=0.407 Sum_probs=120.2
Q ss_pred hhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccE
Q 008495 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (563)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 455 (563)
...+++++.+++.++.++.++ .+..+++|+.|++++|.+++.. .+..+++|++|++++|.+.+++...+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345566777777777666654 3566777777777777766653 3566777777777777777666666667777777
Q ss_pred EeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCCCC
Q 008495 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533 (563)
Q Consensus 456 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l 533 (563)
|++++|.++...+..+..+++|++|++++|+++.++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 77777777666666666777777777777776655543 45667777777777777765433 56677777777777777
Q ss_pred CcCCCCcccCcccCcEEEcCCCCcc
Q 008495 534 SALPPELGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 534 ~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (563)
+.+++..+..+++|+.|++++|++.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc
Confidence 7666654443467777777777654
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.5e-21 Score=174.74 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=169.5
Q ss_pred ccccceeecCCCCCCcCCh-hhhccCCccEEECCCCC-CCcCCc-cccCCCCCcEEEccc-CCCCCCChHHhhcCCCCCE
Q 008495 356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNS-IQELPP-ELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSC 431 (563)
Q Consensus 356 ~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-l~~l~~-~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 431 (563)
+..+++++++++.+..++. .+..+++|++|++++|. ++.+++ .+..+++|+.|++++ |+++.++...+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3468899999999988776 56788999999999997 888765 688999999999998 8999888878889999999
Q ss_pred EEcCCCCCcccCCcccCCCCccc---EEeCCCc-cCCCCCCCCCCCCCCCC-eEEcCCCcccccchhhhccCCccEEEcC
Q 008495 432 LKLDNNPLRQVPSDGFKDIPMLQ---ILDLSYN-IASLPENPPFSSLPHLQ-ELYLRRMQLREAPTDILRLQQLRILDLS 506 (563)
Q Consensus 432 L~L~~~~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 506 (563)
|++++|.+..++. +..+++|+ +|++++| .++...+..+..+++|+ .|++++|+++.++......++|++|+++
T Consensus 110 L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999999998775 78888888 9999999 88888878899999999 9999999999888765555899999999
Q ss_pred CCc-CCchh-hhccCC-CCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCC
Q 008495 507 QNS-LQSIP-EGFKNL-TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556 (563)
Q Consensus 507 ~~~-l~~l~-~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 556 (563)
+|. ++.+| ..+..+ ++|+.|++++|+++.+|+. .+ ++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~-~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GL-EHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TC-TTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hh-ccCceeeccCcc
Confidence 995 99885 458888 9999999999999999876 33 789999998874
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=9.4e-22 Score=192.33 Aligned_cols=223 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred cccccEEEccCCCccc-----hhHhhcCCCCCcEEEcCCCCCCC----cchh-------hhcCCCccEEEcCCCcCCC--
Q 008495 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-- 105 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~~~~----l~~~-------~~~~~~L~~L~l~~~~l~~-- 105 (563)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6778888888887773 33446678888888888775542 2333 3567777888887777764
Q ss_pred ---CCchhcccCCccEEEccCCCCCC-----Cccccccc---------CCCCeEecCCCccc--cCc---cccccCCCcc
Q 008495 106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS 163 (563)
Q Consensus 106 ---~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~i~---~~l~~~~~L~ 163 (563)
++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 45566777777777777777652 22223333 67777777777665 222 3455666777
Q ss_pred EEEecCCccccc-----chhhhccccccceEEcCCCcC-----CCCcccccCCCcccEEeccCCcccc-----cCCCccc
Q 008495 164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSISG 228 (563)
Q Consensus 164 ~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~l-----~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~ 228 (563)
+|++++|.+... ....+..+++|+.|++++|.+ ..++..+..+++|++|++++|.+.. ++..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 777777766521 111355556666666666665 2344555556666666666665552 2333322
Q ss_pred --ccccceEEcCCCCCcc-----Cchhh-cCCCCCcEEEccCCccc
Q 008495 229 --CCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 229 --~~~L~~L~l~~~~~~~-----l~~~l-~~~~~L~~L~l~~~~l~ 266 (563)
+++|++|++++|.+.. ++..+ .++++|++|++++|.++
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 5556666666665554 44444 34556666666555554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.1e-20 Score=172.95 Aligned_cols=192 Identities=28% Similarity=0.370 Sum_probs=168.0
Q ss_pred cccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
..++.+.+.++.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++.+...+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57889999999888765 4788999999999999998874 688999999999999999999888889999999999999
Q ss_pred CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhh
Q 008495 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (563)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~ 515 (563)
|.+..++...+..+++|++|++++|.++...+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.++.++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999998888889999999999999999988887889999999999999999977655 5789999999999999998754
Q ss_pred -hccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCc
Q 008495 516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (563)
Q Consensus 516 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (563)
.+..+++|+.|++++|++... +++|+.+++++|.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 478999999999999987632 24566666665554
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.2e-21 Score=189.73 Aligned_cols=236 Identities=21% Similarity=0.222 Sum_probs=188.1
Q ss_pred hHHHHHhhhcceeeCCCCcccccchH-HhhccccccCCCcccccccccEEEccCCCcc----chhH-------hhcCCCC
Q 008495 2 DRILKAARTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLKE-------DLRNLPL 69 (563)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~----~l~~-------~~~~~~~ 69 (563)
.++++.++++++|+++++.++..... +...+ ..+++|++|++++|.+. .+|. .+..+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l---------~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENI---------ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTT---------TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHH---------HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 35788899999999999998854333 32222 23789999999997554 3333 3589999
Q ss_pred CcEEEcCCCCCCC-----cchhhhcCCCccEEEcCCCcCCC-----CCchhccc---------CCccEEEccCCCCC--C
Q 008495 70 LTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA---------TALVKFDCSSNQLK--E 128 (563)
Q Consensus 70 L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~ 128 (563)
|++|++++|.+.. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999986 67788999999999999999862 33334445 89999999999997 3
Q ss_pred Cc---ccccccCCCCeEecCCCcccc-----Ccc-ccccCCCccEEEecCCccc----ccchhhhccccccceEEcCCCc
Q 008495 129 LP---SSLGRCLNLSDFKASNNCITS-----LPE-DLADCSKMSKLDVEGNKLT----VLSNNLIASWTMLTELIASKNL 195 (563)
Q Consensus 129 ~~---~~~~~~~~L~~L~l~~~~~~~-----i~~-~l~~~~~L~~L~l~~~~i~----~~~~~~~~~~~~L~~L~l~~~~ 195 (563)
++ ..+..+++|++|++++|.+.. +.+ .+..+++|++|++++|.++ ......+..+++|++|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 44 467789999999999998872 333 7889999999999999985 2233457889999999999999
Q ss_pred CCC-----Ccccc--cCCCcccEEeccCCcccc-----cCCCc-ccccccceEEcCCCCCccCc
Q 008495 196 LNG-----MPETI--GSLSRLIRLDLHQNRILS-----IPSSI-SGCCSLAEFYMGNNALSALP 246 (563)
Q Consensus 196 l~~-----~~~~l--~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~~~~l~ 246 (563)
++. ++..+ +.+++|++|++++|.+.. ++..+ .++++|+.|++++|.+....
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 865 35566 348999999999999986 77777 56899999999999988543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.4e-19 Score=165.38 Aligned_cols=177 Identities=30% Similarity=0.424 Sum_probs=160.5
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
..+++++++..+..+|..+. +.++.|++++|.+..++. .+..+++|+.|++++|.+++.....+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45788999999998887664 689999999999998654 588999999999999999999888889999999999999
Q ss_pred CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccch-hhhccCCccEEEcCCCcCCchhh
Q 008495 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPE 515 (563)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~l~~ 515 (563)
|.+..++...|..+++|++|++++|.++...+..+..+++|+.|++++|++..++. .+..+++|++|++++|.++.+|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99999988889999999999999999998888888999999999999999998876 58889999999999999998865
Q ss_pred -hccCCCCCCEEECCCCCCCcC
Q 008495 516 -GFKNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 516 -~l~~l~~L~~L~l~~n~l~~~ 536 (563)
.+..+++|+.|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 588999999999999998754
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=8.2e-21 Score=183.61 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=135.3
Q ss_pred eeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchh-----HhhcCCC-CCcEEEcCCCCCCCc-chh
Q 008495 14 LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PAA 86 (563)
Q Consensus 14 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-----~~~~~~~-~L~~L~l~~~~~~~l-~~~ 86 (563)
.+++.+++....++.... .++|++|++++|.++..+ +.+..++ +|++|++++|.+... +..
T Consensus 3 ~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 70 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70 (362)
T ss_dssp EECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH
T ss_pred cccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH
Confidence 455666666444444433 445788888887777443 5677777 788888887777644 333
Q ss_pred hhcC-----CCccEEEcCCCcCCCCC-ch----hccc-CCccEEEccCCCCCCCcc-c----ccc-cCCCCeEecCCCcc
Q 008495 87 IGEL-----HMLKSLDVSFNSIMKIP-DE----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNCI 149 (563)
Q Consensus 87 ~~~~-----~~L~~L~l~~~~l~~~~-~~----~~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~~ 149 (563)
+..+ ++|++|++++|.++..+ .. +..+ ++|++|++++|.++..+. . +.. .++|++|++++|.+
T Consensus 71 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 71 LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 4332 77778888777776432 22 3344 677777777777764432 2 222 35777777777766
Q ss_pred c-----cCccccccCC-CccEEEecCCcccccchhhhc----cc-cccceEEcCCCcCCC-----CcccccC-CCcccEE
Q 008495 150 T-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIRL 212 (563)
Q Consensus 150 ~-----~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~l~~-----~~~~l~~-~~~L~~L 212 (563)
. .++..+...+ +|++|++++|.++......+. .+ ++|++|++++|.++. ++..+.. .++|++|
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 6 2333344444 777777777776655543232 23 466666666666654 3333333 2356666
Q ss_pred eccCCccccc-----CCCcccccccceEEcCCCCCcc--------CchhhcCCCCCcEEEccCCccc
Q 008495 213 DLHQNRILSI-----PSSISGCCSLAEFYMGNNALSA--------LPAELGKLSKLGTLDLHSNQLK 266 (563)
Q Consensus 213 ~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~--------l~~~l~~~~~L~~L~l~~~~l~ 266 (563)
++++|.+... ...+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 6666655432 1223444555555555555221 1223344455555555555544
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=4.8e-21 Score=183.82 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=157.6
Q ss_pred ccEEEccCCCccchhHhhcCC--CCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCC--CCchhcccCCccEEEcc
Q 008495 47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS 122 (563)
Q Consensus 47 l~~L~l~~~~i~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~ 122 (563)
++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 667777777665 3445555 67777777777776554555567777888887777652 56667777778888887
Q ss_pred CCCCC-CCcccccccCCCCeEecCCC-ccc--cCccccccCCCccEEEecCC-ccccc-chhhhcccc-ccceEEcCCCc
Q 008495 123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL 195 (563)
Q Consensus 123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~i~~~l~~~~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~~ 195 (563)
+|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 77766 34456666777888888777 455 25555677778888888777 76643 233466677 78888887774
Q ss_pred --C--CCCcccccCCCcccEEeccCCc-cc-ccCCCcccccccceEEcCCCC-Cc-cCchhhcCCCCCcEEEccCCcccc
Q 008495 196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE 267 (563)
Q Consensus 196 --l--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~-~l~~~l~~~~~L~~L~l~~~~l~~ 267 (563)
+ ..++..+..+++|++|++++|. +. ..+..+..+++|++|++++|. +. .....+..+++|++|++++| ++.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 3 3355556667788888888877 44 445566777888888888774 22 11124667788888888877 432
Q ss_pred ccccccceeeeEEEcCCCCCCC
Q 008495 268 YCVEACQLRLSVLDLSNNSLSG 289 (563)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~ 289 (563)
.........+..|++++|.+++
T Consensus 286 ~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 286 GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TCHHHHHHHSTTSEESCCCSCC
T ss_pred HHHHHHHhhCcceEEecccCcc
Confidence 2222222235666667777666
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=174.00 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=140.2
Q ss_pred cccccEEEccCCCccc--hhH--hhcCCCCCcEEEcCCCCCCC-cchhh--hcCCCccEEEcCCCcCCCC-C----chhc
Q 008495 44 AVDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIG 111 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~--l~~--~~~~~~~L~~L~l~~~~~~~-l~~~~--~~~~~L~~L~l~~~~l~~~-~----~~~~ 111 (563)
...++.+.+.++.+.. +.. .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.+... + ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3456777777766651 211 12234567778887777763 34444 6677777777777777632 2 2234
Q ss_pred ccCCccEEEccCCCCCCCc-ccccccCCCCeEecCCCcccc---Cc--cccccCCCccEEEecCCcccccchh---hhcc
Q 008495 112 SATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---LP--EDLADCSKMSKLDVEGNKLTVLSNN---LIAS 182 (563)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---i~--~~l~~~~~L~~L~l~~~~i~~~~~~---~~~~ 182 (563)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 5777777777777777554 566677777777777776542 21 2235677777777777777644332 2456
Q ss_pred ccccceEEcCCCcCCCC-cccccCC---CcccEEeccCCcccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEE
Q 008495 183 WTMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258 (563)
Q Consensus 183 ~~~L~~L~l~~~~l~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L 258 (563)
+++|++|++++|.++.. |..+..+ ++|++|++++|++..+|..+. ++|++|++++|.+..+|. +..+++|+.|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 67777777777777654 5444444 577777777777776666553 677777777777776644 5666777777
Q ss_pred EccCCccc
Q 008495 259 DLHSNQLK 266 (563)
Q Consensus 259 ~l~~~~l~ 266 (563)
++++|.++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777654
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=174.78 Aligned_cols=198 Identities=18% Similarity=0.126 Sum_probs=166.0
Q ss_pred cccccEEEccCCCcc-chhHhh--cCCCCCcEEEcCCCCCCCc-c----hhhhcCCCccEEEcCCCcCCCCC-chhcccC
Q 008495 44 AVDLQKLILAHNNIE-KLKEDL--RNLPLLTVLNVSHNKLSEL-P----AAIGELHMLKSLDVSFNSIMKIP-DEIGSAT 114 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~-~l~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~ 114 (563)
.++|++|++++|.+. ..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 567999999999988 455566 8999999999999998852 2 24567999999999999998664 6788999
Q ss_pred CccEEEccCCCCCC---Cc--ccccccCCCCeEecCCCccccCccc----cccCCCccEEEecCCcccccchhhhccc--
Q 008495 115 ALVKFDCSSNQLKE---LP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTVLSNNLIASW-- 183 (563)
Q Consensus 115 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~l~~~~i~~~~~~~~~~~-- 183 (563)
+|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+....+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998763 32 2346889999999999999866542 5788999999999999998744335555
Q ss_pred -cccceEEcCCCcCCCCcccccCCCcccEEeccCCcccccCCCcccccccceEEcCCCCCcc
Q 008495 184 -TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (563)
Q Consensus 184 -~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (563)
++|++|++++|.++.+|..+. ++|++|++++|++..+|. +..+++|+.|++++|.++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999999988764 799999999999998865 6788999999999998763
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=2.3e-20 Score=180.52 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=85.9
Q ss_pred CCccEEECCCCCCCcCCcc-----ccCC-CCCcEEEcccCCCCCCChHHhhc-----CCCCCEEEcCCCCCcccCCcc--
Q 008495 380 GEITKLDLSRNSIQELPPE-----LSSC-ASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVPSDG-- 446 (563)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~-----l~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~l~~~~~~~-- 446 (563)
++|++|++++|.++..... +..+ ++|+.|++++|++++.....+.. +++|++|++++|.+.+.....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 5555555555555543221 3333 55566666666555544433222 245666666665555322211
Q ss_pred --cCCCC-cccEEeCCCccCCCCCCCC----CCCC-CCCCeEEcCCCcccc-----cchhhhc-cCCccEEEcCCCcCCc
Q 008495 447 --FKDIP-MLQILDLSYNIASLPENPP----FSSL-PHLQELYLRRMQLRE-----APTDILR-LQQLRILDLSQNSLQS 512 (563)
Q Consensus 447 --~~~~~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~l~~ 512 (563)
+...+ +|++|++++|.++..+... +..+ ++|++|++++|.+.. ++..+.. .++|++|++++|.++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 22333 5666666665555443321 2223 356666666665554 3334433 2356666666665543
Q ss_pred h-----hhhccCCCCCCEEECCCCCCCcCC--------CCcccCcccCcEEEcCCCCccc
Q 008495 513 I-----PEGFKNLTSLTELDLSDNNISALP--------PELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 513 l-----~~~l~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
. ...+..+++|+.|++++|++..+. ..+... ++|+.||+++|++..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcCCC
Confidence 2 223345555666666666533222 112222 555566666665543
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.1e-19 Score=167.59 Aligned_cols=172 Identities=30% Similarity=0.392 Sum_probs=115.1
Q ss_pred hccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEE
Q 008495 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 456 (563)
..+++++.+++++|.+..++ .+..+++|+.|++++|++++... +..+++|++|++++|.+..++. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEE
Confidence 34566777777777766664 35666777777777777766655 5667777777777777666543 6667777777
Q ss_pred eCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcC
Q 008495 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~ 536 (563)
++++|.++.. ..+..+++|+.|++++|++..+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 7777766654 3466667777777777777665 456667777777777777776654 66677777777777777766
Q ss_pred CCCcccCcccCcEEEcCCCCccc
Q 008495 537 PPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 537 ~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
+. +..+ ++|+.|++++|+++.
T Consensus 194 ~~-l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 RA-LAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp GG-GTTC-TTCSEEEEEEEEEEC
T ss_pred hh-hccC-CCCCEEECcCCcccC
Confidence 53 3333 677777777776644
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4e-19 Score=165.70 Aligned_cols=169 Identities=22% Similarity=0.346 Sum_probs=100.3
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
+++|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence 455666666666666654 36666666666666666666544 666666666666666666543 356666666666666
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l 203 (563)
|.+..+ ..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+.. +..+++|+.|++++|.++.++. +
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence 666655 3455566666666666666555 455556666666666665555443 5555555555555555555432 4
Q ss_pred cCCCcccEEeccCCccc
Q 008495 204 GSLSRLIRLDLHQNRIL 220 (563)
Q Consensus 204 ~~~~~L~~L~l~~~~~~ 220 (563)
..+++|+.|++++|++.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 55555555555555444
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=9.1e-20 Score=174.91 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=181.9
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCC--cchh
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA 86 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~ 86 (563)
+..+.+|++++.+. | ..+..+. .++++.|+++++.+...+..+..+++|++|++++|.+.. ++..
T Consensus 47 ~~~~~l~l~~~~~~--~-~~~~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--P-DVTGRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTCBCC--H-HHHHHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hhheeeccccccCC--H-HHHHhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 44788999988876 2 2222210 167999999999888666567788999999999998773 6677
Q ss_pred hhcCCCccEEEcCCCcCC-CCCchhcccCCccEEEccCC-CCC--CCcccccccCCCCeEecCCC-cccc--CccccccC
Q 008495 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC 159 (563)
Q Consensus 87 ~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--i~~~l~~~ 159 (563)
+..+++|++|++++|.+. ..+..+..+++|++|++++| .++ .++..+.++++|++|++++| .+.. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 888999999999999877 55667888999999999998 576 35666788899999999999 7774 56668888
Q ss_pred C-CccEEEecCCc--cc-ccchhhhccccccceEEcCCCc-CC-CCcccccCCCcccEEeccCCc-cc-ccCCCcccccc
Q 008495 160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS 231 (563)
Q Consensus 160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-l~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~ 231 (563)
+ +|++|++++|. ++ ......+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 8 99999999984 44 2222346778899999999998 43 456677888999999999985 22 11235678899
Q ss_pred cceEEcCCCCCccCchhhcCC-CCCcEEEccCCcccccccc
Q 008495 232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCVE 271 (563)
Q Consensus 232 L~~L~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~ 271 (563)
|+.|++++| +..- .+..+ .+++.|++++|.++.....
T Consensus 274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCC
Confidence 999999998 4311 12222 2355666788888764433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.5e-18 Score=175.08 Aligned_cols=179 Identities=29% Similarity=0.410 Sum_probs=156.6
Q ss_pred cccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCC
Q 008495 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (563)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (563)
..++.++++++.+..++..+. ++|+.|++++|.++.+| ..+++|+.|++++|+++.++. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 478999999999998887663 78999999999999998 457999999999999999766 343 999999999
Q ss_pred CCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhh
Q 008495 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (563)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 516 (563)
|.++.++. .+++|+.|++++|.++.+.. .+++|+.|++++|+++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99999776 68999999999999987543 67899999999999999887 55 899999999999999987
Q ss_pred ccCCCCC-------CEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 517 FKNLTSL-------TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 517 l~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
+.. +| +.|++++|+++.+|..++.+ ++|+.|++++|+++.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSS 244 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCC
Confidence 654 77 99999999999999988886 999999999999864
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.3e-18 Score=175.67 Aligned_cols=186 Identities=31% Similarity=0.432 Sum_probs=152.7
Q ss_pred ccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCC
Q 008495 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (563)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 124 (563)
.+++.|+++++.++.+|..+ +++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 37899999999888887655 378999999999888887 557889999999998888877 554 8999999999
Q ss_pred CCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCccccc
Q 008495 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204 (563)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~ 204 (563)
.++.+|. .+++|+.|++++|.+..++. .+++|++|++++|.++.++. +. ++|+.|++++|.++.+|. +.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HH
Confidence 9888876 67889999999998888776 57889999999998888766 44 889999999999988887 54
Q ss_pred CCCcc-------cEEeccCCcccccCCCcccccccceEEcCCCCCc-cCchhhcC
Q 008495 205 SLSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGK 251 (563)
Q Consensus 205 ~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~ 251 (563)
. +| +.|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 4 77 9999999999999988888999999999999987 44555544
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.8e-19 Score=170.23 Aligned_cols=236 Identities=20% Similarity=0.237 Sum_probs=181.8
Q ss_pred hhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCCC-cch-
Q 008495 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LPA- 85 (563)
Q Consensus 9 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~-l~~- 85 (563)
+.-++++|+++++++||.++. +++++|+|++|.|+.+|. +|.++++|++|+|++|.+.. ++.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 345789999999999999874 469999999999999985 68999999999999999864 554
Q ss_pred hhhcCCCccE-EEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCcc-cccccCCCCeEecCC-CccccCcc-ccccC-
Q 008495 86 AIGELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC- 159 (563)
Q Consensus 86 ~~~~~~~L~~-L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~i~~-~l~~~- 159 (563)
.|.+++++++ +.+..|++..+ +..|..+++|++|++++|.+..++. .+....++..+++.+ +.+..++. .|..+
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 6788888776 55566788876 5668899999999999999987764 445666778888865 45665553 34554
Q ss_pred CCccEEEecCCcccccchhhhccccccceEEcCC-CcCCCCcc-cccCCCcccEEeccCCcccccCCCcccccccceEEc
Q 008495 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237 (563)
Q Consensus 160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 237 (563)
..++.|++++|+++.++..++ ....++.+.+.+ |.++.+|. ++..+++|+.|++++|++..+|... +.+|+.|.+
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~ 230 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRA 230 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEEC
T ss_pred hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhh
Confidence 468889999999998887745 456788888874 77788875 5688899999999999998887542 556666665
Q ss_pred CCC-CCccCchhhcCCCCCcEEEccCC
Q 008495 238 GNN-ALSALPAELGKLSKLGTLDLHSN 263 (563)
Q Consensus 238 ~~~-~~~~l~~~l~~~~~L~~L~l~~~ 263 (563)
.++ .++.+| .+..+++|+.+++.++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 554 556666 4778888888888653
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=9.5e-18 Score=150.50 Aligned_cols=153 Identities=33% Similarity=0.447 Sum_probs=136.4
Q ss_pred CccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCC
Q 008495 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (563)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (563)
.-+.++.+++.++.+|..+. ++|+.|++++|.++......+..+++|++|++++|.+..++...|..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45678888888888887554 8899999999999998888888999999999999999988888789999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCCc
Q 008495 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISA 535 (563)
Q Consensus 461 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~~ 535 (563)
|.++...+..+..+++|+.|++++|++..+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999888778899999999999999999999999999999999999999998864 48889999999999998874
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=167.01 Aligned_cols=174 Identities=30% Similarity=0.369 Sum_probs=121.0
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhh-cCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
+.++++++.++.+|..+. +.++.|++++|+++.++...+. .+++|++|+|++|.+..++...|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 566777777777765443 4567777777777776666555 7777777777777777777666777777777777777
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchhhhc----cCCCCCCEEECCCCCCCcC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~~~l----~~l~~L~~L~l~~n~l~~~ 536 (563)
.++...+..|..+++|+.|++++|++..+ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|+++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 77766666677777777777777777755 445677777777777777777776543 4577788888888877777
Q ss_pred CCCcccCccc--CcEEEcCCCCcc
Q 008495 537 PPELGLLEPS--LQALRLDGNPLR 558 (563)
Q Consensus 537 ~~~~~~~~~~--L~~L~l~~~~~~ 558 (563)
|...+...+. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 6543322233 467788877764
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.1e-18 Score=150.04 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=107.7
Q ss_pred cCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCe
Q 008495 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479 (563)
Q Consensus 400 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 479 (563)
..+++|+.|++++|.+++++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++...+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44566667777777666555 2566777777777777655443 3667777777777777776655666777788888
Q ss_pred EEcCCCcccc-cchhhhccCCccEEEcCCCc-CCchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCc
Q 008495 480 LYLRRMQLRE-APTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (563)
Q Consensus 480 L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (563)
|++++|++.. .+..+..+++|++|++++|. ++.+| .+..+++|+.|++++|+++.++ .+..+ ++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGC-SSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccC-CCCCEEEeeCccc
Confidence 8888887774 55667788888888888887 77776 5778888888888888888776 44444 7888888888887
Q ss_pred cc
Q 008495 558 RR 559 (563)
Q Consensus 558 ~~ 559 (563)
+.
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 65
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.3e-18 Score=172.66 Aligned_cols=172 Identities=23% Similarity=0.352 Sum_probs=132.8
Q ss_pred cccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccC
Q 008495 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 123 (563)
+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 567888888888888775 57788888888888888887765 778888888888888887765 677788888888888
Q ss_pred CCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCcccc
Q 008495 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (563)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l 203 (563)
|.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.. +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 888776 3577788888888888887776 567788888888888888776655 777778888888888777764 46
Q ss_pred cCCCcccEEeccCCcccccC
Q 008495 204 GSLSRLIRLDLHQNRILSIP 223 (563)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~ 223 (563)
..+++|+.|++++|.+...|
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEEccCCcCcCCc
Confidence 77778888888877776443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.3e-18 Score=172.64 Aligned_cols=169 Identities=26% Similarity=0.366 Sum_probs=82.6
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (563)
.++.|.+.++.+..++ .+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+.+.+ .+..+++|++|+|++|
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence 3444555555444443 34445555555555555544443 445555555555555554433 2444555555555555
Q ss_pred CCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhc
Q 008495 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517 (563)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l 517 (563)
.+..++ .+..+++|+.|+|++|.++.. ..+..+++|+.|++++|++..++. +..+++|+.|++++|.++.+| .+
T Consensus 120 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 120 GISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH
Confidence 554432 244455555555555554443 234445555555555555554433 444555555555555555443 24
Q ss_pred cCCCCCCEEECCCCCCCcC
Q 008495 518 KNLTSLTELDLSDNNISAL 536 (563)
Q Consensus 518 ~~l~~L~~L~l~~n~l~~~ 536 (563)
..+++|+.|+|++|++...
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 4455555555555544433
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=5.7e-18 Score=149.93 Aligned_cols=176 Identities=27% Similarity=0.389 Sum_probs=128.8
Q ss_pred ceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcc-ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCC
Q 008495 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (563)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (563)
..+++.+.++..++..+ .+++++|+++++.++.++.. +..+++|+.|++++|+++.++...+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666666666666443 35788888888887776543 5677888888888888887777667778888888888888
Q ss_pred CcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhhhc
Q 008495 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGF 517 (563)
Q Consensus 439 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~l 517 (563)
+..++...+..+++|++|++++|.++...+..+..+++|+.|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 8877766677888888888888888777666677788888888888877766654 567788888888888654
Q ss_pred cCCCCCCEEECCCCCCC-cCCCCcccC
Q 008495 518 KNLTSLTELDLSDNNIS-ALPPELGLL 543 (563)
Q Consensus 518 ~~l~~L~~L~l~~n~l~-~~~~~~~~~ 543 (563)
..+++|+.|+++.|+++ .+|..++.+
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 33567777777777766 566655544
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.7e-18 Score=151.63 Aligned_cols=154 Identities=14% Similarity=0.267 Sum_probs=135.4
Q ss_pred hccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEE
Q 008495 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (563)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 456 (563)
..+++++.+++++|.+++++ .+..+++|+.|++++|.++... .+..+++|++|++++|.+.......+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56788999999999999888 6889999999999999887765 47889999999999999998555568999999999
Q ss_pred eCCCccCCCCCCCCCCCCCCCCeEEcCCCc-ccccchhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCc
Q 008495 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535 (563)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~ 535 (563)
++++|.++...+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|+++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999988667778899999999999997 88886 7889999999999999999987 68899999999999998764
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.8e-18 Score=157.35 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=138.7
Q ss_pred ccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCC
Q 008495 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (563)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (563)
.+..+++.++.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++++.+. +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 3456667777777665 5677889999999999888887 67888999999999999888776 788899999999999
Q ss_pred CCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcCCchhhhc
Q 008495 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517 (563)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l 517 (563)
++.+++.. .. ++|+.|++++|.++.. ..+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus 96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 98887653 33 8899999999988775 34788889999999999888875 678888999999999988877 567
Q ss_pred cCCCCCCEEECCCCCCCcCCC
Q 008495 518 KNLTSLTELDLSDNNISALPP 538 (563)
Q Consensus 518 ~~l~~L~~L~l~~n~l~~~~~ 538 (563)
..+++|+.|++++|+++..|.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCCE
T ss_pred ccCCCCCEEeCCCCcccCCcc
Confidence 888899999999988876653
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=6.9e-18 Score=149.38 Aligned_cols=168 Identities=32% Similarity=0.403 Sum_probs=144.2
Q ss_pred ccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
-+.++.++++++.+|..+ .++|+.|++++|+++.++...+..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 367888888888888654 468999999999999988888899999999999999999988887899999999999999
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCCCCCcCCCC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~~ 539 (563)
.++...+..+..+++|+.|++++|++..++.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 99988777789999999999999999987665 67899999999999999988654 78899999999999976632
Q ss_pred cccCcccCcEEEcCCCCcc
Q 008495 540 LGLLEPSLQALRLDGNPLR 558 (563)
Q Consensus 540 ~~~~~~~L~~L~l~~~~~~ 558 (563)
+++|+.|++++|.++
T Consensus 164 ----~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 164 ----CPGIRYLSEWINKHS 178 (208)
T ss_dssp ----TTTTHHHHHHHHHCT
T ss_pred ----CCCHHHHHHHHHhCC
Confidence 256677776666554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.4e-17 Score=147.82 Aligned_cols=152 Identities=27% Similarity=0.276 Sum_probs=137.3
Q ss_pred CcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCC
Q 008495 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (563)
Q Consensus 405 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 484 (563)
-+.++.++++++.++.. -.++|++|++++|.+..+....|..+++|++|++++|.++......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 56789999999888863 358999999999999998888899999999999999999888878889999999999999
Q ss_pred Ccccccchh-hhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCccc
Q 008495 485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 485 ~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (563)
|+++.++.. +..+++|++|++++|.++.+|..+..+++|+.|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999988665 678999999999999999999999999999999999999999987766555999999999999863
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.6e-17 Score=146.53 Aligned_cols=150 Identities=25% Similarity=0.368 Sum_probs=109.8
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCcc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (563)
+.++++++.++.+|..+. ++++.|++++|+++.++...+..+++|++|+|++|.+..+....|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567778888887776544 678888888888877776667777888888888888777766667777778888888777
Q ss_pred CCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCchhh-hccCCCCCCEEECCCCCCC
Q 008495 463 ASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~n~l~ 534 (563)
++......|..+++|+.|++++|++..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776666677777777777777777755 3456667777777777777776653 3666777777777777654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.8e-18 Score=156.41 Aligned_cols=169 Identities=20% Similarity=0.251 Sum_probs=101.3
Q ss_pred ccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCC
Q 008495 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (563)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 124 (563)
.+++.+++.++.++.++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 34555556666666554 4555666666666666666654 45566666666666666665554 666666666666666
Q ss_pred CCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCccccc
Q 008495 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204 (563)
Q Consensus 125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~ 204 (563)
.++.++.... ++|++|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+..+ ..+.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~ 169 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLT 169 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhc
Confidence 6665543222 56666666666666553 4666666666666666666553 255566666666666666555 4455
Q ss_pred CCCcccEEeccCCccccc
Q 008495 205 SLSRLIRLDLHQNRILSI 222 (563)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~ 222 (563)
.+++|+.|++++|.+...
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 566666666666655533
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.1e-17 Score=160.80 Aligned_cols=196 Identities=22% Similarity=0.277 Sum_probs=101.3
Q ss_pred cccceeecCCCCCCcCChh-hhccCCccEEECCCCCCCc-CCc-cccCCCCCcE-EEcccCCCCCCChHHhhcCCCCCEE
Q 008495 357 VTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE-LPP-ELSSCASLQT-LILSRNKIKDWPDAILTSLSSLSCL 432 (563)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~-l~~-~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L 432 (563)
.++++|+++++.+..++.. +.++++|++|++++|.+.+ ++. .+..+++++. +.+.+++++.+++..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 3455555555555555432 3445555555555555432 332 2444444443 3333455555544445555555555
Q ss_pred EcCCCCCcccCCcccCCCCcccEEeCCC-ccCCCCCCCCCCCCC-CCCeEEcCCCcccccchhhhccCCccEEEcCC-Cc
Q 008495 433 KLDNNPLRQVPSDGFKDIPMLQILDLSY-NIASLPENPPFSSLP-HLQELYLRRMQLREAPTDILRLQQLRILDLSQ-NS 509 (563)
Q Consensus 433 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~-~~ 509 (563)
++++|.+..++...+....++..+++.+ +.+.......+..++ .++.|++++|+++.++......++|+++++++ |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 5555555555444444444555555533 334433333444433 45666666666666655555555666666653 45
Q ss_pred CCchhh-hccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCC
Q 008495 510 LQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 555 (563)
Q Consensus 510 l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 555 (563)
++.+|. .|..+++|+.|++++|+++.+|...+ .+|++|.+.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~ 233 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARST 233 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccC
Confidence 556653 35666666666666666666665432 34555554444
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.8e-17 Score=146.37 Aligned_cols=150 Identities=27% Similarity=0.395 Sum_probs=125.1
Q ss_pred ceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCC
Q 008495 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (563)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (563)
..+++.++++..+|..+. +.++.|++++|.++.++. .+..+++|+.|++++|+++.+.+..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888876553 678899999888888665 57888889999999998888877778888999999999999
Q ss_pred CcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCC
Q 008495 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 439 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
+..++...|..+++|++|++++|.++...+..+..+++|+.|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8888887788888999999999988888888888889999999999988877653 677888999999888765
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=145.68 Aligned_cols=148 Identities=25% Similarity=0.314 Sum_probs=72.9
Q ss_pred eeecCCCCCCcCChhhhccCCccEEECCCCCCCcCC--ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCC
Q 008495 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (563)
Q Consensus 361 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (563)
.++++++.+..+|..+ ...+++|++++|.++.++ ..+..+++|+.|++++|+++.++...+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4555555555444432 223445555555555432 124445555555555555555444444555555555555555
Q ss_pred CcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcC
Q 008495 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSL 510 (563)
Q Consensus 439 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l 510 (563)
+..++...|..+++|++|++++|.++...+..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5554444455555555555555555544444455555555555555555443 33444455555555555544
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.8e-17 Score=144.27 Aligned_cols=150 Identities=23% Similarity=0.380 Sum_probs=119.3
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCC-hHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
+.++++++.++.+|..+. +.++.|++++|+++... ...+..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578888888888886543 45688888888888763 345678888888888888888887777888888888888888
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCCch-hhhccCCCCCCEEECCCCCCC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~n~l~ 534 (563)
.++...+..+..+++|++|++++|++..+ +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88877777778888888888888888866 45677788888888888888876 566788888888888888765
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.8e-17 Score=158.53 Aligned_cols=173 Identities=28% Similarity=0.429 Sum_probs=152.7
Q ss_pred ceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcc-cc-CCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCC
Q 008495 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (563)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (563)
+.++++++.+..+|..+. ..++.|++++|.++.++.. +. .+++|+.|++++|+++.+....+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578899999988887553 4689999999999987654 55 8999999999999999998888899999999999999
Q ss_pred CCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhh----hccCCccEEEcCCCcCCch
Q 008495 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQSI 513 (563)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~L~~L~l~~~~l~~l 513 (563)
.+..++...|..+++|+.|++++|.++...+..|..+++|+.|++++|++..++... ..+++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 999998888999999999999999999888889999999999999999999888765 5789999999999999988
Q ss_pred h-hhccCCCC--CCEEECCCCCCC
Q 008495 514 P-EGFKNLTS--LTELDLSDNNIS 534 (563)
Q Consensus 514 ~-~~l~~l~~--L~~L~l~~n~l~ 534 (563)
| ..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 6 44777776 489999999765
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.6e-15 Score=148.13 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCcch-hhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCc-ccccccCCCCeEecCC
Q 008495 81 SELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASN 146 (563)
Q Consensus 81 ~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 146 (563)
++|+. +|.+|.+|+.+.+..+ ++.+ ..+|.+|++|+.+++..+ ++.++ ..|.+|++|+.+.+..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 34433 6667777777777543 4433 345666777777776543 44443 3455566666555443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=9.2e-19 Score=177.81 Aligned_cols=179 Identities=19% Similarity=0.186 Sum_probs=99.8
Q ss_pred cccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCC-------------CC-CcchhhhcCCCccEEE-cCCCcCCCC
Q 008495 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (563)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~l~~~ 106 (563)
|.+++|+.|+++++.++.+|..++++++|+.|+++++. .. .+|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45677777888888777777777777888877776553 11 2344555666666666 444333222
Q ss_pred Cc------hhcc--cCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchh
Q 008495 107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (563)
Q Consensus 107 ~~------~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~ 178 (563)
+. .+.. ...|+.|++++|.++.+|. +.++++|+.|++++|.+..+|..+..+++|+.|++++|.++.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence 11 0111 1235556666665555554 55555566666665555555555555555555555555555544
Q ss_pred hhccccccceEEcCCCcCCCC--cccccCCCcccEEeccCCcccccC
Q 008495 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIP 223 (563)
Q Consensus 179 ~~~~~~~L~~L~l~~~~l~~~--~~~l~~~~~L~~L~l~~~~~~~~~ 223 (563)
.+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+...+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 255555555555555555444 444555555555555555554443
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.6e-15 Score=146.74 Aligned_cols=323 Identities=13% Similarity=0.178 Sum_probs=166.1
Q ss_pred hhcCCCCCcEEEcCCCCCCCcch-hhhcCCCccEEEcCCCcCCCC-CchhcccCCccEEEccCCCCCCCc-ccccccCCC
Q 008495 63 DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNL 139 (563)
Q Consensus 63 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L 139 (563)
+|.+|.+|+.+.+.. .++.|+. +|.+|.+|+.+++.++ +..+ ...|.++++|+.+.+..+ +..+. ..|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 455555555555543 2444433 4555555555555433 2222 234555555555544432 22221 233333222
Q ss_pred CeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCC-cccccCCCcccEEeccCCc
Q 008495 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR 218 (563)
Q Consensus 140 ~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~ 218 (563)
+ ..........-...|..|++|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+ ..++..+..|+.+.+..+.
T Consensus 143 ~-~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 143 E-ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp E-EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred c-cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 2 21111111111124566666666666543 34455555666666666666554 2222 2345556666666655543
Q ss_pred ccccCCCcccccccceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCCCccccCCC
Q 008495 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT 298 (563)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (563)
.. +......+.+|+.+.+......--...+..+..++.+.+..+... + -...+..+.
T Consensus 220 ~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i---------------------~~~~F~~~~ 276 (394)
T 4fs7_A 220 YY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I---------------------GGSLFYNCS 276 (394)
T ss_dssp CE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E---------------------CSCTTTTCT
T ss_pred eE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e---------------------ecccccccc
Confidence 22 222333455666666654322211234566667777666543221 0 112344555
Q ss_pred CCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhc
Q 008495 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378 (563)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 378 (563)
.++.+......+ + ...+..
T Consensus 277 ~l~~~~~~~~~i---~----------------------------------------------------------~~~F~~ 295 (394)
T 4fs7_A 277 GLKKVIYGSVIV---P----------------------------------------------------------EKTFYG 295 (394)
T ss_dssp TCCEEEECSSEE---C----------------------------------------------------------TTTTTT
T ss_pred ccceeccCceee---c----------------------------------------------------------cccccc
Confidence 555554433211 0 012334
Q ss_pred cCCccEEECCCCCCCcCC-ccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEe
Q 008495 379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (563)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 457 (563)
+.+|+.+.+..+ ++.+. .++..|.+|+.+++.. .++.+...+|.+|.+|+.+.+..+ +..++..+|.+|++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 556666666543 33332 3466777788777754 366666677788888888888765 7777777788888888888
Q ss_pred CCCccCCCCCCCCCCCCCCCCeE
Q 008495 458 LSYNIASLPENPPFSSLPHLQEL 480 (563)
Q Consensus 458 l~~n~l~~~~~~~~~~~~~L~~L 480 (563)
+..+ +... ..+|.++++|+.+
T Consensus 373 lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GGGG-GGGBCTTCEEEEE
T ss_pred ECCC-CEEh-hheecCCCCCcEE
Confidence 8654 2222 2356777777654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=8.1e-18 Score=170.87 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=155.4
Q ss_pred hhhcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCC--------------ccchhHhhcCCCCCcEE
Q 008495 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL 73 (563)
Q Consensus 8 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--------------i~~l~~~~~~~~~L~~L 73 (563)
+..++.|+++++.++.+|..+.. +++|+.|++.++. ....|..++.+++|+.|
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence 55778899999999999998854 6788888886653 22456778888889988
Q ss_pred E-cCCCCCCCcch------hhhc--CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEec
Q 008495 74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (563)
Q Consensus 74 ~-l~~~~~~~l~~------~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 144 (563)
+ ++.+.+..++. .+.. ...|++|++++|.++.+|. +..+++|+.|++++|.++.+|..+.++++|+.|++
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 8 56554443322 1111 2369999999999999986 99999999999999999999999999999999999
Q ss_pred CCCccccCccccccCCCccEEEecCCcccccc-hhhhccccccceEEcCCCcCCCCcccc----cCCCcccEEec
Q 008495 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETI----GSLSRLIRLDL 214 (563)
Q Consensus 145 ~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~l----~~~~~L~~L~l 214 (563)
++|.++.+| .+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.+..+|... ..+++|+.|++
T Consensus 494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999987 8999999999999999999885 666999999999999999998776533 23677777753
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.8e-15 Score=143.94 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=59.4
Q ss_pred cCCccEEECCCCCCCcCCc-cccCCCCCcEEEcccCCCCCCChHHhhcCCCCC-EEEcCCCCCcccCCcccCCCCcccEE
Q 008495 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL 456 (563)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~l~~~~~~~~~~~~~L~~L 456 (563)
+++|+.+++++|.++.+++ +|..|++|+.+++.++ ++.++..+|.+|++|+ .+.+++ .+..++..+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 4566666666655555543 3555666666666555 5555555566666666 666655 5555555556666666666
Q ss_pred eCCCccCCCCCCCCCCCCCCCCeEE
Q 008495 457 DLSYNIASLPENPPFSSLPHLQELY 481 (563)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~ 481 (563)
+++++.+..++..+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6655555555555566666666554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.2e-16 Score=130.56 Aligned_cols=130 Identities=25% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCCCEEEcCCCCCc--ccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccc-cchhhhccCCccEE
Q 008495 427 SSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRIL 503 (563)
Q Consensus 427 ~~L~~L~L~~~~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L 503 (563)
++|++|++++|.+. .++.. +..+++|++|++++|.++.. ..+..+++|++|++++|++.. ++..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34444444444444 23222 34444555555555544443 344455555555555555554 44444445555555
Q ss_pred EcCCCcCCchh--hhccCCCCCCEEECCCCCCCcCCC---CcccCcccCcEEEcCCCCccc
Q 008495 504 DLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDGNPLRR 559 (563)
Q Consensus 504 ~l~~~~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~~~~~~ 559 (563)
++++|.++.+| ..+..+++|+.|++++|+++.+++ ..+..+++|+.|++++|++.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 55555555443 345555555555555555555544 122222555555555555544
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.1e-15 Score=145.40 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=87.7
Q ss_pred CCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCC-e
Q 008495 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-E 479 (563)
Q Consensus 401 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~ 479 (563)
...+++.+.+.+.-...........|++|+++++++|.+..++..+|.++++|+.+++.+| +..++..+|.++++|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 3456666776655221111112234888999999988888888888888888888888887 7777777888888888 8
Q ss_pred EEcCCCcccccc-hhhhccCCccEEEcCCCcCCchhh-hccCCCCCCEEEC
Q 008495 480 LYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDL 528 (563)
Q Consensus 480 L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l 528 (563)
+.+.+ .++.++ ..|.+|++|++++++++.++.++. .|.++++|+.|+.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88877 666553 456667777777777777776643 4677777776653
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.6e-15 Score=124.95 Aligned_cols=126 Identities=22% Similarity=0.209 Sum_probs=103.7
Q ss_pred CCCCCEEEcCCCCCc--ccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccc-cchhhhccCCccE
Q 008495 426 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 502 (563)
Q Consensus 426 ~~~L~~L~L~~~~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~ 502 (563)
.++|++|++++|.+. .++. .+..+++|++|++++|.++.. ..+..+++|+.|++++|++.. ++..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467888888888887 4543 478888999999999888776 668889999999999999887 7777778999999
Q ss_pred EEcCCCcCCchh--hhccCCCCCCEEECCCCCCCcCCC---CcccCcccCcEEEcCC
Q 008495 503 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDG 554 (563)
Q Consensus 503 L~l~~~~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~ 554 (563)
|++++|.++.+| ..+..+++|+.|++++|+++.+++ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999875 678899999999999999998876 3343348999998864
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.5e-15 Score=127.80 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCcEEEcCCCCCC--CcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCC-CcccccccCCCCeEec
Q 008495 68 PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKA 144 (563)
Q Consensus 68 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 144 (563)
++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44444444444444 4444444444444444444444443 344444455555555554443 3333334444444444
Q ss_pred CCCccccCc--cccccCCCccEEEecCCcccccch---hhhccccccceEEcCCCcCCCC
Q 008495 145 SNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGM 199 (563)
Q Consensus 145 ~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~l~~~ 199 (563)
++|.+..++ ..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 444444433 344555555555555555554433 2344444444444444444333
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.1e-15 Score=160.30 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=116.4
Q ss_pred hcceeeCCCCcccccchHHhhccccccCCCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhc
Q 008495 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (563)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 89 (563)
.+..+++..+.+..+|..+.+.+.- .--.+..+++..+.+...++.+..+++|+.|+|++|.+..++..+..
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGG
T ss_pred ccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcC
Confidence 3566777777777666555432100 00122333344444444567789999999999999999999887888
Q ss_pred CCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecC
Q 008495 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (563)
Q Consensus 90 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (563)
+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..+.++++|++|++++|.+..+|..|..+++|++|++++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred Ccccccchhhhccccc-cceEEcCCCcCCC-CcccccCCCcccEEeccCC
Q 008495 170 NKLTVLSNNLIASWTM-LTELIASKNLLNG-MPETIGSLSRLIRLDLHQN 217 (563)
Q Consensus 170 ~~i~~~~~~~~~~~~~-L~~L~l~~~~l~~-~~~~l~~~~~L~~L~l~~~ 217 (563)
|.+.......+..... ...+++++|.+.. +| ..|+.|+++.+
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 9998666555544422 2345677777643 33 34666666665
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.6e-15 Score=124.91 Aligned_cols=124 Identities=23% Similarity=0.286 Sum_probs=79.4
Q ss_pred cccccEEEccCCCcc--chhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCC-CCchhcccCCccEEE
Q 008495 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFD 120 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~ 120 (563)
.++++.|++++|.+. .+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777776 6666667777777777777777666 556667777777777777665 555555667777777
Q ss_pred ccCCCCCCCc--ccccccCCCCeEecCCCccccCcc----ccccCCCccEEEec
Q 008495 121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE 168 (563)
Q Consensus 121 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~l~~~~~L~~L~l~ 168 (563)
+++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777666543 455556666666666665555443 35555555555543
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=5.9e-14 Score=136.16 Aligned_cols=260 Identities=14% Similarity=0.214 Sum_probs=178.2
Q ss_pred CCCCcEEEccCCcccccccccc-ceeeeEEEcCCCCCCCCCc-cccCCCCCcEEEcCCCccccccccccCCCChHHHHHh
Q 008495 252 LSKLGTLDLHSNQLKEYCVEAC-QLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (563)
Q Consensus 252 ~~~L~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (563)
+..++.+.+.+. ++.+....+ ..+|+.+.+..+ ++.+.. .|.+ .+|+.+.+.. .+..++...|.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~--------- 178 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY--------- 178 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTT---------
T ss_pred cCCccEEEECCc-cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhC---------
Confidence 356777777653 343333222 234788887665 555443 3555 3688888875 566665554443
Q ss_pred hccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCC-ccccCCCCCcEE
Q 008495 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTL 408 (563)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L 408 (563)
+..++.+.+.++.+..++...+.+.+|+.+.+..+ ++.++ .+|..|++|+.+
T Consensus 179 --------------------------c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 179 --------------------------CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp --------------------------CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred --------------------------cccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 34677888888778777777777788888888743 55543 457788888888
Q ss_pred EcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCC-----CCCCCCCCCCCCCCeEEcC
Q 008495 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS-----LPENPPFSSLPHLQELYLR 483 (563)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~ 483 (563)
++..+ ++.+...+|.+ .+|+.+.+. +.+..++..+|.+|++|+.+++.++.+. .+...+|.+|++|+.+.+.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 88764 56666666666 678888884 4577787778888888888888876554 4566778888888888888
Q ss_pred CCcccccc-hhhhccCCccEEEcCCCcCCchh-hhccCCCCCCEEECCCCCCCcCCCCcccCc-ccCcEEEcCCCCc
Q 008495 484 RMQLREAP-TDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPL 557 (563)
Q Consensus 484 ~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~~~~ 557 (563)
+ .+..+. ..|.+|++|+.+.+..+ ++.++ .+|.++ +|+.+++.+|.+..++...+..+ .+++.|++..+.+
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 466553 34667888888888554 66664 457888 88888888888777776665433 4677888776543
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=8.3e-14 Score=135.12 Aligned_cols=214 Identities=11% Similarity=0.155 Sum_probs=156.3
Q ss_pred eeEEEcCCCCCCCCC-ccccCCCCCcEEEcCCCccccccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhcc
Q 008495 277 LSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (563)
Q Consensus 277 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (563)
|+.+.+.. .+..+. ..|.+|++|+.+++..+.++.++...+..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~----------------------------------- 202 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY----------------------------------- 202 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT-----------------------------------
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee-----------------------------------
Confidence 44444443 333322 34667777777777777776665544432
Q ss_pred ccccceeecCCCCCCcCCh-hhhccCCccEEECCCCCCCcCCcc-ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEE
Q 008495 356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (563)
Q Consensus 356 ~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 433 (563)
..++.+.+.+. +..+.. .+.++++|+.+.+..+ ++.+... |.. .+|+.+.+ .+.++.+...+|.+|++|+++.
T Consensus 203 -~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 -AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp -CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred -cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 23455555432 333333 4557889999999874 5555443 555 78999999 5668888888899999999999
Q ss_pred cCCCCCc-----ccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccc-hhhhccCCccEEEcCC
Q 008495 434 LDNNPLR-----QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQ 507 (563)
Q Consensus 434 L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 507 (563)
+.++.+. .++..+|.+|++|+.+++.+ .+..++..+|.+|++|+.+.+.++ ++.+. ..|.++ +|+++++.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 9988765 58888899999999999994 588888889999999999999765 55553 457778 999999999
Q ss_pred CcCCchhh-hccCCC-CCCEEECCCCCCC
Q 008495 508 NSLQSIPE-GFKNLT-SLTELDLSDNNIS 534 (563)
Q Consensus 508 ~~l~~l~~-~l~~l~-~L~~L~l~~n~l~ 534 (563)
|.+..++. .|..++ +++.|++..+.+.
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCcccccccccCCCCCccEEEeCHHHHH
Confidence 98887754 477775 7899999888654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.6e-15 Score=128.70 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=73.7
Q ss_pred ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCC
Q 008495 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (563)
Q Consensus 399 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 478 (563)
+..+++|+.|++++|+++.++. .....++|++|++++|.+.++ ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456667777777776665532 112233666666666666655 2355566666666666655544333335555555
Q ss_pred eEEcCCCcccccch--hhhccCCccEEEcCCCcCCchhhh----ccCCCCCCEEECCCCCC
Q 008495 479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNNI 533 (563)
Q Consensus 479 ~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~n~l 533 (563)
.|++++|++..++. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66665555555544 455555555555555555555442 45555555555555543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.9e-15 Score=128.42 Aligned_cols=136 Identities=22% Similarity=0.211 Sum_probs=102.0
Q ss_pred CCcccccccccEEEccCCCccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCch-hcccCCc
Q 008495 38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATAL 116 (563)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L 116 (563)
...+.++.+|+.|++++|.++.++......++|+.|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445667888888888888887754333344888888888888877 5677788888888888888877644 4778888
Q ss_pred cEEEccCCCCCCCcc--cccccCCCCeEecCCCccccCccc----cccCCCccEEEecCCcccc
Q 008495 117 VKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTV 174 (563)
Q Consensus 117 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~l~~~~i~~ 174 (563)
++|++++|.+..++. .+..+++|+.|++++|.+..++.. +..+++|+.|+++++...+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888877765 677778888888888877777654 7777777777777776553
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=6.6e-14 Score=121.50 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=77.2
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCcc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (563)
+.++++++.++.+|..+. ++|+.|++++|.++.++ ..+..+++|++|++++|.+..++...|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 455666666666654432 45666666666666555 345666666666666666666665556666666666666666
Q ss_pred CCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCC
Q 008495 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
++...+..|..+++|+.|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666555666666666666666666655543 455666666666666553
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=6e-14 Score=121.76 Aligned_cols=127 Identities=27% Similarity=0.378 Sum_probs=117.9
Q ss_pred ceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCC
Q 008495 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (563)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 439 (563)
..++++++.+..+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.+....|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57888999998888755 3689999999999999998999999999999999999999988899999999999999999
Q ss_pred cccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc
Q 008495 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
..++...|..+++|++|++++|.++......+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999888999999999999999999888888999999999999999876
No 134
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=7.5e-13 Score=129.24 Aligned_cols=128 Identities=13% Similarity=0.252 Sum_probs=68.5
Q ss_pred cccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCC
Q 008495 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (563)
Q Consensus 398 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 477 (563)
++..|.+|+.+.+... +..+...+|.+|++|+.+.+. +.+..++..+|.+|++|+.+++..+ ++.++..+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4556666666666433 233444556666667776665 3455666666666777777766643 555555666666666
Q ss_pred CeEEcCCCcccccc-hhhhccCCccEEEcCCCcCCchhhhccCCCCCCEEECCCC
Q 008495 478 QELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (563)
Q Consensus 478 ~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~n 531 (563)
+.+.+..+ ++.+. ..|.+|++|+++++.++... . ..+..+.+|+.+.+..+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 66666543 33332 34556666666666655322 1 23455556666655544
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=5e-14 Score=122.39 Aligned_cols=127 Identities=24% Similarity=0.366 Sum_probs=69.6
Q ss_pred cEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChH-HhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
+.++++++.++.+|..+. ++++.|++++|+++.++.. .+..+++|++|++++|.+.++....|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 445555555555554332 2555555555555554432 2455555666666655555554444555555666666655
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCccccc-chhhhccCCccEEEcCCCcCC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~ 511 (563)
.++...+..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555555555555666666666655533 344555556666666665554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.4e-13 Score=118.12 Aligned_cols=128 Identities=30% Similarity=0.427 Sum_probs=93.7
Q ss_pred CcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCC
Q 008495 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (563)
Q Consensus 405 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 484 (563)
.+.+++++++++.++.. ..++|++|++++|.+.+++...+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 46777778877776642 346788888888888777766677778888888888877776666677777888888888
Q ss_pred Ccccccchh-hhccCCccEEEcCCCcCCchhhh-ccCCCCCCEEECCCCCCCc
Q 008495 485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535 (563)
Q Consensus 485 ~~l~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~n~l~~ 535 (563)
|+++.++.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 877766554 46677777777777777776554 4667777777777777664
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.5e-13 Score=117.90 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=97.9
Q ss_pred ccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
.+.+++++++++.+|..+. ++|+.|++++|+++.++...+..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567777777777764433 67888888888887777766777888888888888888777766778888888888888
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCcccccchh-hhccCCccEEEcCCCcCC
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
.++...+..+..+++|+.|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88777666677788888888888888877665 466788888888888776
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=6.8e-14 Score=121.53 Aligned_cols=127 Identities=23% Similarity=0.306 Sum_probs=117.0
Q ss_pred ceeecCCCCCCcCChhhhccCCccEEECCCCCCCcCCcc--ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCC
Q 008495 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (563)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (563)
+.++++++.+..+|..+.. .+++|++++|.++.++.. +..+++|+.|++++|+++...+..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6789999999988876643 899999999999998753 889999999999999999998888999999999999999
Q ss_pred CCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCCccc
Q 008495 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
.+..++...|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998888999999999999999999888888999999999999999887
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=7e-13 Score=129.44 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=97.0
Q ss_pred hhhccCCccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCccc
Q 008495 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (563)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 454 (563)
.+..+..|+.+.+......--..++..+++|+.+.+. ..++.++..+|.+|.+|+++.|..+ +..+...+|.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4556788899988765433334567889999999995 5677788888999999999999864 7888888999999999
Q ss_pred EEeCCCccCCCCCCCCCCCCCCCCeEEcCCCcccccchhhhccCCccEEEcCCCcC
Q 008495 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL 510 (563)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l 510 (563)
.+.+..+ ++.++..+|.+|++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 9999754 778888899999999999999874332 3566778888888876543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.2e-14 Score=152.45 Aligned_cols=175 Identities=22% Similarity=0.216 Sum_probs=92.8
Q ss_pred ccccEEEccCCCccchhHhhcCCCCCcEEEcCC-----CCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEE
Q 008495 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSH-----NKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (563)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~-----~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 119 (563)
+.++.|++.++.+...+..+-....|+.+.+.. +.+...+..+..++.|++|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 457777787777776655444444444433322 333333456777777888888888777777777777888888
Q ss_pred EccCCCCCCCcccccccCCCCeEecCCCccccCccccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCC
Q 008495 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (563)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~ 199 (563)
++++|.++.+|..+.++++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+...
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 88888777777777777888888888887777777777777788888877777766655 77777777777777777543
Q ss_pred -cccccCCC-cccEEeccCCccc
Q 008495 200 -PETIGSLS-RLIRLDLHQNRIL 220 (563)
Q Consensus 200 -~~~l~~~~-~L~~L~l~~~~~~ 220 (563)
|..+.... .+..+++++|.+.
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ChHHHhhcchhhhHHhhccCccc
Confidence 33332221 1223556666554
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.6e-15 Score=129.87 Aligned_cols=129 Identities=29% Similarity=0.313 Sum_probs=97.3
Q ss_pred ccccEEEccCC--CccchhHhhcCCCCCcEEEcCCCCCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEcc
Q 008495 45 VDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (563)
Q Consensus 45 ~~l~~L~l~~~--~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 122 (563)
.+++...+.+. .++++|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 34555566554 45566677888888888888888888777 7777888888888888888777777777888888888
Q ss_pred CCCCCCCcccccccCCCCeEecCCCccccCcc--ccccCCCccEEEecCCccccc
Q 008495 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVL 175 (563)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~l~~~~~L~~L~l~~~~i~~~ 175 (563)
+|.++.++ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+...
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 88887765 57777888888888887776543 577778888888888776543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=9.4e-15 Score=127.86 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=75.7
Q ss_pred CCCCcchhhhcCCCccEEEcCCCcCCCCCchhcccCCccEEEccCCCCCCCcccccccCCCCeEecCCCccccCcccccc
Q 008495 79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (563)
Q Consensus 79 ~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~l~~ 158 (563)
.++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++ .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34455557777788888888877777776 777777777777777777777666666667777777777666654 4566
Q ss_pred CCCccEEEecCCcccccch-hhhccccccceEEcCCCcC
Q 008495 159 CSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLL 196 (563)
Q Consensus 159 ~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l 196 (563)
+++|++|++++|.+..++. ..+..+++|++|++++|.+
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 6666666666666655433 2344555555555555544
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.39 E-value=1.3e-10 Score=112.88 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred ccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCC
Q 008495 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (563)
Q Consensus 399 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 478 (563)
+..+..|+.+.+..+ ++.+...++..+.+|+.+.+..+ +..++..+|..+++|+.+.+.++.++.++..+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444332 33333333444444444444322 3334444444444444444444444444444444444444
Q ss_pred eEEcC
Q 008495 479 ELYLR 483 (563)
Q Consensus 479 ~L~l~ 483 (563)
.+.+.
T Consensus 314 ~i~lp 318 (379)
T 4h09_A 314 SVTLP 318 (379)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 44443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=7.8e-12 Score=105.93 Aligned_cols=106 Identities=26% Similarity=0.373 Sum_probs=85.6
Q ss_pred CccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCC
Q 008495 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (563)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (563)
..+.++++++.++.+|..+. ++|+.|++++|+++.+....+..+++|++|+|++|.+..++...|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34678888888888876553 7888888888888888777778888888888888888888777778888888888888
Q ss_pred ccCCCCCCCCCCCCCCCCeEEcCCCccc
Q 008495 461 NIASLPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 461 n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
|.++...+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888777777888888888888888766
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1e-11 Score=105.56 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=88.9
Q ss_pred ccEEECCCCCCCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
-+.++++++.++.+|..+. ++|+.|++++|+++.+++..+..+++|++|+|++|++..++...|..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678888888888887654 78888999999888887777888888999999988888888777788888888888888
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCcccccc
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLREAP 491 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 491 (563)
.++...+..+..+++|+.|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888777666888888888888888877443
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.34 E-value=1.3e-10 Score=112.77 Aligned_cols=310 Identities=12% Similarity=0.123 Sum_probs=192.5
Q ss_pred ccccCCCccEEEecCCcccccchhhhccccccceEEcCCCcCCCCc-ccccCCCcccEEeccCCcccccCC-Cccccccc
Q 008495 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSL 232 (563)
Q Consensus 155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L 232 (563)
++....+|+.+.+.. .++.|+..+|.++.+|+.+.+..+ ++.+. .+|..+ +|+.+.+..+ +..+.. +|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 566677888888864 477888888888888888888654 44443 334444 5666665543 222222 2322 245
Q ss_pred ceEEcCCCCCccCchhhcCCCCCcEEEccCCccccccccccceeeeEEEcCCCCCCCC-CccccCCCCCcEEEcCCCccc
Q 008495 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR 311 (563)
Q Consensus 233 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 311 (563)
+.+.+..+-...-...+..+ +++.+ .+..+ ++.+ ...+..+..++.+.+......
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~-~l~~~----------------------~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNS-SVKRI----------------------VIPKS-VTTIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp SEEECCTTCCEECTTTTTTC-CCCEE----------------------EECTT-CCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred ccccCCCccccccccccccc-eeeee----------------------eccce-eeccccchhcccccccccccccccce
Confidence 55555443111111112221 23332 22221 1221 223566677777766554322
Q ss_pred cccccccCCCChHHHHHhhccCCCCCCCccccchhhHHHhhhccccccceeecCCCCCCcCChhhhccCCccEEECCCCC
Q 008495 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391 (563)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 391 (563)
....... .. +........+..+..+..+.+....
T Consensus 172 ~~~~~~~--------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 172 YVAENYV--------------------------------------------LY--NKNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp EEEETTE--------------------------------------------EE--ETTSSEEEECCTTCCCSEEECCTTC
T ss_pred eecccce--------------------------------------------ec--ccccceeccccccccccccccccce
Confidence 1110000 00 0000111122334455566555433
Q ss_pred CCcCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCC
Q 008495 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471 (563)
Q Consensus 392 l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 471 (563)
.......+..+.+++.+.+... +..+....+..+.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +...+...|
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 2223345677888998888554 55666677889999999999876 77888888999999999999754 666777789
Q ss_pred CCCCCCCeEEcCCCcccccch-hhhccCCccEEEcCCCcCCchh-hhccCCCCCCEEECCCCCCCcCCCCcccCc
Q 008495 472 SSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE 544 (563)
Q Consensus 472 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 544 (563)
..|++|+.+.+.++.++.+++ .|.+|++|+++.+..+ ++.|. .+|.+|++|+++.+..+ ++.+....|..+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 999999999999988887654 5788999999999765 77774 45899999999999765 777777777664
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7.9e-14 Score=133.94 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=126.2
Q ss_pred cCCccEEECCCCCCCc-----CCcccc-CCCCCcEEEcccCCCCCCChHHh-hcCCCCCEEEcCCCCCcccCCccc----
Q 008495 379 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF---- 447 (563)
Q Consensus 379 ~~~L~~L~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~---- 447 (563)
.+.++.+++++|.++. +...+. .+++|+.|++++|.+++.....+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999875 222233 34799999999999876443332 346789999999999876443333
Q ss_pred -CCCCcccEEeCCCccCCCCCCCC----CCCCCCCCeEEcCCCcccc-----cchhhhccCCccEEEcCCCcCCc-----
Q 008495 448 -KDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 512 (563)
Q Consensus 448 -~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~----- 512 (563)
...++|++|++++|.++..+... +..+++|++|++++|.+.. +...+..+++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46789999999999887543322 3568899999999999873 34556778899999999999983
Q ss_pred hhhhccCCCCCCEEECCCCCCCcCCCC----cccCcc--cCcEEE--cCCCCcc
Q 008495 513 IPEGFKNLTSLTELDLSDNNISALPPE----LGLLEP--SLQALR--LDGNPLR 558 (563)
Q Consensus 513 l~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~--~L~~L~--l~~~~~~ 558 (563)
++..+...++|++|+|++|+++..... +... . .|+.+. +.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~-~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA-AEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcC-CCccchhhHhhhcCCccC
Confidence 455567789999999999998732211 1111 2 177777 6776654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.7e-11 Score=104.23 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=52.3
Q ss_pred cEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCC
Q 008495 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (563)
Q Consensus 406 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 485 (563)
+.+++++++++.++... .++|++|++++|.+.+++...|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555555544321 245555555555555554444555555555555555555444444445555555555555
Q ss_pred cccccchh-hhccCCccEEEcCCCcCC
Q 008495 486 QLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 486 ~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
++..++.. +..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55544433 444455555555555444
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=2.3e-11 Score=103.04 Aligned_cols=104 Identities=24% Similarity=0.284 Sum_probs=63.2
Q ss_pred CcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCC
Q 008495 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (563)
Q Consensus 405 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 484 (563)
.+.+++++++++.++... .++|++|++++|.+.+++...|..+++|++|++++|.++...+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666666655422 35666666666666666555566666666666666666655555556666666666666
Q ss_pred Ccccccchh-hhccCCccEEEcCCCcCC
Q 008495 485 MQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (563)
Q Consensus 485 ~~l~~~~~~-~~~~~~L~~L~l~~~~l~ 511 (563)
|++..++.. +..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666655443 555666666666666554
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.6e-12 Score=123.41 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=100.8
Q ss_pred cccccEEEccCCCccc-----hhHhhcC-CCCCcEEEcCCCCCCCc--chhhhcCCCccEEEcCCCcCCCC-----Cchh
Q 008495 44 AVDLQKLILAHNNIEK-----LKEDLRN-LPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKI-----PDEI 110 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~-----l~~~~~~-~~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~l~~~-----~~~~ 110 (563)
.+.++.|++++|.++. +...+.. .++|++|++++|.+... ......+++|++|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567888888887773 2233332 36788888888877632 22233455778888888877621 1122
Q ss_pred -cccCCccEEEccCCCCCC-----CcccccccCCCCeEecCCCcccc-----CccccccCCCccEEEecCCcccccchh-
Q 008495 111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNN- 178 (563)
Q Consensus 111 -~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~- 178 (563)
...++|++|++++|.++. ++..+..+++|++|++++|.+.. ++..+...++|++|++++|.++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245778888888887752 33445667788888888887762 345567777888888888887754332
Q ss_pred ---hhccccccceEEcCCCcCCC
Q 008495 179 ---LIASWTMLTELIASKNLLNG 198 (563)
Q Consensus 179 ---~~~~~~~L~~L~l~~~~l~~ 198 (563)
.+...+.|++|++++|.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 23455778888888887753
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.5e-09 Score=104.02 Aligned_cols=103 Identities=27% Similarity=0.339 Sum_probs=68.3
Q ss_pred EEECCCC-CCCcCCccccCCCCCcEEEccc-CCCCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCCc
Q 008495 384 KLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (563)
Q Consensus 384 ~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (563)
.++.+++ .++.+|. +..+++|+.|++++ |.+..++...|..+++|+.|+|++|.+..++...|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455655 5666666 66666777777764 6776666666666777777777777777666666667777777777777
Q ss_pred cCCCCCCCCCCCCCCCCeEEcCCCccc
Q 008495 462 IASLPENPPFSSLPHLQELYLRRMQLR 488 (563)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~l~ 488 (563)
.++...+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77665555555444 777777776665
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.9e-09 Score=103.32 Aligned_cols=101 Identities=24% Similarity=0.233 Sum_probs=48.2
Q ss_pred EEEcCCC-CCcccCCcccCCCCcccEEeCCC-ccCCCCCCCCCCCCCCCCeEEcCCCcccccch-hhhccCCccEEEcCC
Q 008495 431 CLKLDNN-PLRQVPSDGFKDIPMLQILDLSY-NIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQ 507 (563)
Q Consensus 431 ~L~L~~~-~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~ 507 (563)
.++.+++ .+..++. +..+++|+.|+|++ |.++...+..|..+++|+.|+|++|++..++. .|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455554 4555444 44555555555553 55544444445555555555555555544332 334455555555555
Q ss_pred CcCCchhhh-ccCCCCCCEEECCCCCCC
Q 008495 508 NSLQSIPEG-FKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 508 ~~l~~l~~~-l~~l~~L~~L~l~~n~l~ 534 (563)
|.++.+|.. +..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555544432 22222 555555555444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=2.2e-09 Score=102.04 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=94.3
Q ss_pred hhccCCccEEECCCCCCC----------cCCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCCCcccCCc
Q 008495 376 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445 (563)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~----------~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 445 (563)
+..+++|+.|.+...... .+...+..+|+|+.|+++++.-..+.. + .+++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence 445677888877544221 133345667888888887773222222 2 377888888887776542222
Q ss_pred cc--CCCCcccEEeCCC--ccC-CCCCC----CCC--CCCCCCCeEEcCCCcccc-cchhh---hccCCccEEEcCCCcC
Q 008495 446 GF--KDIPMLQILDLSY--NIA-SLPEN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL 510 (563)
Q Consensus 446 ~~--~~~~~L~~L~l~~--n~l-~~~~~----~~~--~~~~~L~~L~l~~~~l~~-~~~~~---~~~~~L~~L~l~~~~l 510 (563)
.+ ..+|+|++|+|+. +.. ..... ..+ ..+|+|+.|.+.+|.+.. ....+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 22 3678888888753 111 11100 011 357888888888887763 11222 2467888888888887
Q ss_pred Cc-----hhhhccCCCCCCEEECCCCCCC
Q 008495 511 QS-----IPEGFKNLTSLTELDLSDNNIS 534 (563)
Q Consensus 511 ~~-----l~~~l~~l~~L~~L~l~~n~l~ 534 (563)
+. ++..+..+++|+.|++++|.++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 73 4445566788888888888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1e-08 Score=97.35 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=25.4
Q ss_pred CCCcccEEeccCCcccc-----cCCCcccccccceEEcCCCCCc
Q 008495 205 SLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALS 243 (563)
Q Consensus 205 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 243 (563)
.+++|++|+++.|.+.. ++..+..+++|+.|++++|.++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35667777777766652 3444556677777777777666
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=6.4e-09 Score=89.09 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=67.0
Q ss_pred hhHhhcCCCCCcEEEcCCC-CCCC-----cchhhhcCCCccEEEcCCCcCC-----CCCchhcccCCccEEEccCCCCCC
Q 008495 60 LKEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE 128 (563)
Q Consensus 60 l~~~~~~~~~L~~L~l~~~-~~~~-----l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~ 128 (563)
+...+...++|++|++++| .+.. +...+...++|++|+|++|.+. .+...+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445566666666666666 5552 2334555666666666666665 223344455666666666666652
Q ss_pred -----CcccccccCCCCeEec--CCCcccc-----CccccccCCCccEEEecCCccc
Q 008495 129 -----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLT 173 (563)
Q Consensus 129 -----~~~~~~~~~~L~~L~l--~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~ 173 (563)
+...+...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555566666666 5565552 3445566677777777777665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1e-08 Score=87.87 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=85.6
Q ss_pred cccccEEEccCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCCC-----cchhhhcCCCccEEEcCCCcCC-----CCC
Q 008495 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIP 107 (563)
Q Consensus 44 ~~~l~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~-----~~~ 107 (563)
.+.|++|++++| .+. .+...+...++|++|+|++|.+.. +...+...+.|++|+|++|.+. .+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999998 877 355678888999999999998873 4456677788999999999887 245
Q ss_pred chhcccCCccEEEc--cCCCCCC-----CcccccccCCCCeEecCCCccc
Q 008495 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (563)
Q Consensus 108 ~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (563)
..+...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56777888999999 8888872 4456677789999999998775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=2.2e-08 Score=83.12 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=52.1
Q ss_pred CCccccCCCCCcEEEcccCCCCCCChHHhhcCCCCCEEEcCCCC-CcccCCcccCCC----CcccEEeCCCcc-CCCCCC
Q 008495 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDI----PMLQILDLSYNI-ASLPEN 468 (563)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~ 468 (563)
+|........|+.||+++|.+++.....+..|++|++|+|++|. +++.....+... ++|++|++++|. +++.+.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34333334567788888887777666666777777777777775 444222223332 345666665552 444444
Q ss_pred CCCCCCCCCCeEEcCCC
Q 008495 469 PPFSSLPHLQELYLRRM 485 (563)
Q Consensus 469 ~~~~~~~~L~~L~l~~~ 485 (563)
..+..+++|+.|++++|
T Consensus 133 ~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 44445555555555555
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2e-07 Score=77.26 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=58.9
Q ss_pred CcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCC-cccc-cchhhhc----cCCccEEEcCCCc-CC--chhhhccCCC
Q 008495 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLRE-APTDILR----LQQLRILDLSQNS-LQ--SIPEGFKNLT 521 (563)
Q Consensus 451 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-~l~~-~~~~~~~----~~~L~~L~l~~~~-l~--~l~~~l~~l~ 521 (563)
.+|++||+++|.+++.+...+..+++|+.|++++| .+++ ....+.. +++|++|++++|. ++ ++ ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 46788888888777777667778888888888888 4663 1223333 3478888888884 76 34 3466788
Q ss_pred CCCEEECCCC-CCCc
Q 008495 522 SLTELDLSDN-NISA 535 (563)
Q Consensus 522 ~L~~L~l~~n-~l~~ 535 (563)
+|+.|++++| .++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 8888888888 4553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=2e-06 Score=77.20 Aligned_cols=60 Identities=30% Similarity=0.354 Sum_probs=26.9
Q ss_pred CCCCCcEEEcCCCCCCCcc---hhhhcCCCccEEEcCCCcCCCCCchhcccC--CccEEEccCCCC
Q 008495 66 NLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQL 126 (563)
Q Consensus 66 ~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~~ 126 (563)
++++|+.|+|++|.+..++ ..+..+++|++|+|++|.+..+ ..+..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 3455555555555554332 2334455555555555554433 1222222 444444444444
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.96 E-value=9.7e-06 Score=68.58 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=74.3
Q ss_pred cccccEEEccCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCC-----CcchhhhcCCCccEEEcCCCcCC-----CCC
Q 008495 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (563)
Q Consensus 44 ~~~l~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~ 107 (563)
.+.|+.|+|+++ .|. .+.+++.....|+.|+|++|++. .+...+...+.|++|+|+.|.|. .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888888875 666 34567777888888888888877 34456667788888888888877 344
Q ss_pred chhcccCCccEEEccCC---CCC-----CCcccccccCCCCeEecCCCcc
Q 008495 108 DEIGSATALVKFDCSSN---QLK-----ELPSSLGRCLNLSDFKASNNCI 149 (563)
Q Consensus 108 ~~~~~~~~L~~L~l~~~---~~~-----~~~~~~~~~~~L~~L~l~~~~~ 149 (563)
..+...+.|++|+++++ .+. .+...+..-+.|++|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 45666677888888765 333 2334566677888888876644
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.88 E-value=2.2e-05 Score=66.40 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=89.3
Q ss_pred chhHhhcCCCCCcEEEcCCC-CCC-----CcchhhhcCCCccEEEcCCCcCC-----CCCchhcccCCccEEEccCCCCC
Q 008495 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (563)
Q Consensus 59 ~l~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~ 127 (563)
.+...+.+.+.|+.|+|+++ ++. .+...+.....|+.|+|++|.+. .+...+...+.|++|+++.|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34556778899999999985 776 34557778899999999999988 44556777899999999999998
Q ss_pred -----CCcccccccCCCCeEecCCC---ccc-----cCccccccCCCccEEEecCCccc
Q 008495 128 -----ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGNKLT 173 (563)
Q Consensus 128 -----~~~~~~~~~~~L~~L~l~~~---~~~-----~i~~~l~~~~~L~~L~l~~~~i~ 173 (563)
.+.+.+..-+.|++|+++++ .+. .+.+.+...++|+.|+++.+.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34456667778999999865 334 34556788899999999877544
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1e-05 Score=72.64 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=61.6
Q ss_pred cccccEEEccCCCccchh---HhhcCCCCCcEEEcCCCCCCCcchhhhcCC--CccEEEcCCCcCC-CCC-------chh
Q 008495 44 AVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPAAIGELH--MLKSLDVSFNSIM-KIP-------DEI 110 (563)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~---~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~l~~~~l~-~~~-------~~~ 110 (563)
+++|+.|+|++|.+..++ ..+..+++|+.|+|++|.+..+ ..+..+. +|++|++++|.+. .+| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 678999999999998654 5678999999999999999977 3344444 9999999999987 344 235
Q ss_pred cccCCccEEEcc
Q 008495 111 GSATALVKFDCS 122 (563)
Q Consensus 111 ~~~~~L~~L~l~ 122 (563)
..+++|+.||-.
T Consensus 248 ~~~P~L~~LDg~ 259 (267)
T 3rw6_A 248 ERFPKLLRLDGH 259 (267)
T ss_dssp HHCTTCCEESSC
T ss_pred HHCcccCeECCc
Confidence 677888887643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00038 Score=54.98 Aligned_cols=54 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred EEEcCCCcCC--chhhhccCCCCCCEEECCCCCCCcCCCCcccCcccCcEEEcCCCCc
Q 008495 502 ILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (563)
Q Consensus 502 ~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (563)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.++...+...++|+.|++++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 5554332 2455555655555555555544335555566655554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00039 Score=54.88 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=45.5
Q ss_pred cceeeCCCCccc--ccchHHhhccccccCCCcccccccccEEEccCCCccchhH-hhcCCCCCcEEEcCCCCCC
Q 008495 11 SGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS 81 (563)
Q Consensus 11 ~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~ 81 (563)
-..+++++++++ ++|.++. .+++.|+|++|.|+.++. .|..+++|+.|+|.+|++.
T Consensus 10 ~~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 10 GTLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 357899999998 8998763 468899999999888864 6788888888888888776
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.27 E-value=0.39 Score=35.33 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=21.0
Q ss_pred CCCCChHHhhcCCCCCEEEcCCCCCcccCCcccCCCCcccEEeCCC
Q 008495 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (563)
Q Consensus 415 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (563)
++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444444445555555555432 3444444455555555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.57 E-value=0.4 Score=35.24 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCCCcccCCcccCCCCcccEEeCCCccCCCCCCCCCCCCCCCCeEEcCCC
Q 008495 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (563)
Q Consensus 436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 485 (563)
+..++.+...+|.+|.+|+.+.+..+ ++.++..+|..|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45677888888999999999999864 78888889999999999998875
Done!