Query 008496
Match_columns 563
No_of_seqs 534 out of 3640
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 12:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0273 Beta-transducin family 100.0 3E-106 7E-111 749.8 43.0 520 2-563 1-524 (524)
2 KOG0271 Notchless-like WD40 re 100.0 1E-56 2.2E-61 408.4 29.6 325 209-559 109-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 5.6E-49 1.2E-53 357.9 27.0 287 207-519 149-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-46 1.3E-50 342.6 23.7 282 213-519 173-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 7E-45 1.5E-49 335.6 24.0 278 274-560 175-458 (459)
6 KOG0286 G-protein beta subunit 100.0 1.1E-42 2.4E-47 306.7 33.1 285 208-519 48-343 (343)
7 KOG0279 G protein beta subunit 100.0 1.3E-41 2.8E-46 298.2 32.5 291 209-562 9-313 (315)
8 KOG0318 WD40 repeat stress pro 100.0 1.7E-39 3.7E-44 307.5 40.3 354 207-562 51-560 (603)
9 KOG0286 G-protein beta subunit 100.0 1.1E-39 2.4E-44 287.7 33.3 279 273-560 54-343 (343)
10 KOG0295 WD40 repeat-containing 100.0 3.5E-40 7.6E-45 299.1 28.3 297 208-562 101-406 (406)
11 KOG0296 Angio-associated migra 100.0 1.1E-38 2.4E-43 289.6 35.1 333 205-562 54-398 (399)
12 KOG0263 Transcription initiati 100.0 3.4E-40 7.4E-45 327.6 26.3 305 209-550 372-703 (707)
13 KOG0291 WD40-repeat-containing 100.0 5.4E-38 1.2E-42 308.9 39.9 331 208-562 138-550 (893)
14 KOG0284 Polyadenylation factor 100.0 6.8E-40 1.5E-44 301.2 18.6 278 274-560 96-378 (464)
15 KOG0319 WD40-repeat-containing 100.0 5.4E-38 1.2E-42 308.7 31.8 337 200-562 88-577 (775)
16 KOG0645 WD40 repeat protein [G 100.0 4E-37 8.7E-42 268.9 33.4 289 208-562 7-311 (312)
17 KOG0291 WD40-repeat-containing 100.0 2.1E-36 4.5E-41 297.8 38.5 327 209-562 259-612 (893)
18 KOG0315 G-protein beta subunit 100.0 4.1E-37 8.9E-42 265.5 29.0 278 228-533 11-300 (311)
19 KOG0284 Polyadenylation factor 100.0 8.9E-39 1.9E-43 293.9 19.5 282 215-521 96-380 (464)
20 KOG0285 Pleiotropic regulator 100.0 1.3E-37 2.9E-42 281.4 25.3 290 202-560 138-437 (460)
21 KOG0319 WD40-repeat-containing 100.0 7.3E-37 1.6E-41 300.8 30.3 344 208-560 185-617 (775)
22 KOG0265 U5 snRNP-specific prot 100.0 3.5E-36 7.6E-41 266.7 30.5 278 271-558 44-334 (338)
23 KOG0279 G protein beta subunit 100.0 1.3E-36 2.8E-41 266.9 27.1 246 207-521 55-313 (315)
24 KOG0318 WD40 repeat stress pro 100.0 5.3E-35 1.2E-39 277.1 39.6 352 187-562 158-602 (603)
25 KOG0263 Transcription initiati 100.0 2.3E-37 4.9E-42 307.6 22.8 270 274-562 378-649 (707)
26 KOG0273 Beta-transducin family 100.0 8.7E-36 1.9E-40 279.0 31.7 277 216-521 236-523 (524)
27 PLN00181 protein SPA1-RELATED; 100.0 5.2E-35 1.1E-39 321.3 42.9 289 211-561 479-792 (793)
28 cd00200 WD40 WD40 domain, foun 100.0 6.1E-35 1.3E-39 282.4 37.4 285 209-519 3-289 (289)
29 KOG0265 U5 snRNP-specific prot 100.0 1.8E-35 4E-40 262.2 27.9 285 207-517 39-334 (338)
30 KOG0282 mRNA splicing factor [ 100.0 9.7E-37 2.1E-41 286.5 20.5 296 198-519 197-503 (503)
31 KOG0266 WD40 repeat-containing 100.0 5E-35 1.1E-39 299.3 34.5 289 208-561 151-453 (456)
32 cd00200 WD40 WD40 domain, foun 100.0 7.3E-34 1.6E-38 274.8 38.2 280 272-560 7-289 (289)
33 KOG0281 Beta-TrCP (transducin 100.0 1.1E-36 2.4E-41 274.4 16.6 268 273-562 196-477 (499)
34 KOG0293 WD40 repeat-containing 100.0 2E-35 4.3E-40 272.0 24.6 301 200-522 209-514 (519)
35 KOG0296 Angio-associated migra 100.0 1.1E-34 2.3E-39 263.7 29.0 286 208-521 99-398 (399)
36 KOG0276 Vesicle coat complex C 100.0 4.7E-34 1E-38 275.6 29.7 281 210-516 8-294 (794)
37 KOG0316 Conserved WD40 repeat- 100.0 9E-34 2E-38 242.9 22.9 242 307-561 9-256 (307)
38 KOG0276 Vesicle coat complex C 100.0 1.8E-33 3.9E-38 271.6 27.0 279 273-558 12-295 (794)
39 KOG0772 Uncharacterized conser 100.0 3.7E-33 8E-38 263.9 26.7 304 200-559 152-484 (641)
40 KOG1407 WD40 repeat protein [F 100.0 1E-32 2.2E-37 240.1 27.3 274 270-553 16-293 (313)
41 KOG0313 Microtubule binding pr 100.0 4.1E-33 8.9E-38 254.5 25.7 279 213-521 103-418 (423)
42 KOG0282 mRNA splicing factor [ 100.0 3.4E-34 7.4E-39 269.4 18.7 281 270-560 210-503 (503)
43 KOG0281 Beta-TrCP (transducin 100.0 2.1E-34 4.5E-39 259.8 16.4 273 214-525 196-481 (499)
44 KOG0316 Conserved WD40 repeat- 100.0 2.5E-32 5.4E-37 234.1 27.0 290 202-519 4-297 (307)
45 KOG0315 G-protein beta subunit 100.0 7.6E-32 1.6E-36 233.0 29.8 265 287-562 11-288 (311)
46 KOG0285 Pleiotropic regulator 100.0 3.4E-33 7.4E-38 252.9 22.2 246 306-562 142-389 (460)
47 KOG0973 Histone transcription 100.0 1.6E-32 3.4E-37 282.3 29.4 295 213-562 11-355 (942)
48 KOG0645 WD40 repeat protein [G 100.0 9.7E-32 2.1E-36 235.3 29.5 235 273-560 13-259 (312)
49 KOG0288 WD40 repeat protein Ti 100.0 1.5E-33 3.3E-38 260.0 18.5 290 202-518 162-458 (459)
50 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.5E-36 264.4 31.2 286 209-523 367-666 (888)
51 KOG1407 WD40 repeat protein [F 100.0 1.8E-31 3.8E-36 232.4 28.3 277 209-512 14-293 (313)
52 KOG0266 WD40 repeat-containing 100.0 9.2E-32 2E-36 275.2 31.3 240 274-562 159-409 (456)
53 KOG0295 WD40 repeat-containing 100.0 1.8E-32 3.9E-37 249.1 20.8 253 301-562 94-364 (406)
54 KOG0299 U3 snoRNP-associated p 100.0 6.8E-32 1.5E-36 252.6 25.0 290 208-552 135-445 (479)
55 KOG0313 Microtubule binding pr 100.0 2.5E-31 5.4E-36 242.9 26.5 273 274-560 105-416 (423)
56 KOG0306 WD40-repeat-containing 100.0 8.1E-31 1.8E-35 258.4 31.8 327 216-560 66-662 (888)
57 KOG0292 Vesicle coat complex C 100.0 1.1E-30 2.4E-35 261.3 32.4 284 212-522 6-322 (1202)
58 KOG0292 Vesicle coat complex C 100.0 3.1E-31 6.7E-36 265.3 28.0 278 274-561 9-320 (1202)
59 KOG0293 WD40 repeat-containing 100.0 2E-31 4.4E-36 245.7 24.7 279 272-561 222-512 (519)
60 KOG0275 Conserved WD40 repeat- 100.0 1.2E-31 2.6E-36 239.8 20.0 290 212-560 210-507 (508)
61 KOG0277 Peroxisomal targeting 100.0 5.6E-31 1.2E-35 228.4 22.9 279 219-520 12-308 (311)
62 KOG0274 Cdc4 and related F-box 100.0 1.4E-30 3E-35 265.4 29.7 271 274-563 208-483 (537)
63 KOG0643 Translation initiation 100.0 7.7E-30 1.7E-34 222.8 27.9 280 272-562 8-317 (327)
64 KOG0277 Peroxisomal targeting 100.0 8.6E-31 1.9E-35 227.2 21.6 275 278-560 12-307 (311)
65 KOG0288 WD40 repeat protein Ti 100.0 4.5E-31 9.7E-36 243.7 18.3 274 273-559 174-458 (459)
66 KOG0274 Cdc4 and related F-box 100.0 1.1E-29 2.3E-34 258.9 29.9 285 210-529 202-490 (537)
67 KOG0305 Anaphase promoting com 100.0 1.5E-29 3.4E-34 248.0 29.0 273 277-561 180-460 (484)
68 KOG0310 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 239.2 26.5 275 273-559 25-306 (487)
69 KOG0641 WD40 repeat protein [G 100.0 9E-28 1.9E-32 204.8 34.7 294 214-521 31-349 (350)
70 KOG1063 RNA polymerase II elon 100.0 4.4E-29 9.6E-34 244.3 30.2 335 209-562 261-699 (764)
71 PTZ00421 coronin; Provisional 100.0 7.4E-29 1.6E-33 252.6 33.1 275 215-543 20-314 (493)
72 PTZ00421 coronin; Provisional 100.0 8.9E-29 1.9E-33 252.0 33.5 244 276-562 22-290 (493)
73 KOG0283 WD40 repeat-containing 100.0 7.4E-30 1.6E-34 256.4 24.6 291 213-561 265-575 (712)
74 KOG0278 Serine/threonine kinas 100.0 5.9E-30 1.3E-34 221.3 18.5 287 209-525 8-301 (334)
75 KOG0640 mRNA cleavage stimulat 100.0 2.8E-29 6.2E-34 223.5 23.0 259 207-520 104-425 (430)
76 KOG0641 WD40 repeat protein [G 100.0 2.5E-27 5.3E-32 202.2 31.6 278 274-561 32-348 (350)
77 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-27 5.8E-32 212.6 33.2 278 211-559 10-300 (311)
78 KOG0643 Translation initiation 100.0 9.1E-29 2E-33 216.2 22.6 286 209-521 4-317 (327)
79 KOG1539 WD repeat protein [Gen 100.0 8.5E-27 1.8E-31 232.9 39.1 328 206-559 193-645 (910)
80 PLN00181 protein SPA1-RELATED; 100.0 8.8E-28 1.9E-32 264.2 35.5 256 295-562 457-738 (793)
81 KOG0647 mRNA export protein (c 100.0 6.4E-28 1.4E-32 214.5 27.1 267 214-509 26-311 (347)
82 KOG0268 Sof1-like rRNA process 100.0 1.3E-29 2.9E-34 230.2 16.6 275 271-561 63-344 (433)
83 KOG0305 Anaphase promoting com 100.0 6.7E-28 1.4E-32 236.6 28.7 276 219-523 181-463 (484)
84 KOG0300 WD40 repeat-containing 100.0 1.4E-28 3.1E-33 219.6 21.4 285 209-562 142-476 (481)
85 KOG0301 Phospholipase A2-activ 100.0 7.8E-28 1.7E-32 235.8 27.6 279 209-522 8-289 (745)
86 KOG2096 WD40 repeat protein [G 100.0 3E-27 6.6E-32 211.5 28.9 291 204-519 75-400 (420)
87 KOG0278 Serine/threonine kinas 100.0 1E-28 2.2E-33 213.8 17.8 277 271-560 11-295 (334)
88 KOG0268 Sof1-like rRNA process 100.0 5.1E-29 1.1E-33 226.5 16.8 285 208-524 59-348 (433)
89 KOG0289 mRNA splicing factor [ 100.0 2.2E-27 4.8E-32 220.6 28.0 282 215-561 219-505 (506)
90 PTZ00420 coronin; Provisional 100.0 5.7E-27 1.2E-31 239.7 33.8 227 292-562 50-293 (568)
91 PTZ00420 coronin; Provisional 100.0 1E-26 2.3E-31 237.8 34.9 245 232-544 49-318 (568)
92 KOG0973 Histone transcription 100.0 1.2E-27 2.7E-32 246.4 26.4 282 207-524 61-358 (942)
93 KOG1036 Mitotic spindle checkp 100.0 2.1E-26 4.6E-31 205.8 28.2 266 215-552 13-294 (323)
94 KOG0310 Conserved WD40 repeat- 100.0 2E-26 4.4E-31 217.6 27.9 275 216-520 27-308 (487)
95 KOG0301 Phospholipase A2-activ 100.0 1.4E-26 3E-31 227.1 27.4 272 271-562 11-288 (745)
96 KOG0294 WD40 repeat-containing 100.0 2.8E-26 6.1E-31 205.3 26.4 259 208-539 36-304 (362)
97 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 3E-31 215.3 24.5 235 275-561 220-459 (506)
98 KOG0308 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 230.4 20.2 287 220-559 29-324 (735)
99 KOG0640 mRNA cleavage stimulat 100.0 8E-27 1.7E-31 207.9 21.0 211 273-531 111-345 (430)
100 KOG1446 Histone H3 (Lys4) meth 100.0 2E-25 4.3E-30 200.6 29.7 242 310-562 9-262 (311)
101 KOG0264 Nucleosome remodeling 100.0 3.3E-26 7.1E-31 214.7 25.0 257 211-521 120-404 (422)
102 KOG0275 Conserved WD40 repeat- 100.0 4.8E-27 1E-31 210.5 17.9 238 274-561 213-466 (508)
103 KOG1332 Vesicle coat complex C 100.0 1.1E-26 2.5E-31 200.6 19.3 253 211-521 7-286 (299)
104 KOG0647 mRNA export protein (c 100.0 9.1E-26 2E-30 200.9 25.4 266 272-552 25-313 (347)
105 KOG0639 Transducin-like enhanc 100.0 1.7E-26 3.8E-31 218.0 22.0 284 213-561 417-703 (705)
106 KOG1063 RNA polymerase II elon 99.9 1.4E-25 3.1E-30 219.9 29.1 345 207-561 183-647 (764)
107 KOG1332 Vesicle coat complex C 99.9 8E-27 1.7E-31 201.5 17.9 245 275-560 12-284 (299)
108 KOG1408 WD40 repeat protein [F 99.9 2.1E-25 4.5E-30 218.9 28.4 329 218-562 327-713 (1080)
109 KOG0269 WD40 repeat-containing 99.9 1.2E-26 2.7E-31 230.0 19.4 288 217-524 41-343 (839)
110 KOG2106 Uncharacterized conser 99.9 1.3E-23 2.8E-28 199.1 37.2 311 215-559 200-518 (626)
111 KOG2445 Nuclear pore complex c 99.9 1.3E-24 2.8E-29 194.0 27.2 281 211-540 9-340 (361)
112 KOG4283 Transcription-coupled 99.9 5.2E-25 1.1E-29 195.2 24.2 298 209-520 37-364 (397)
113 KOG0300 WD40 repeat-containing 99.9 2E-25 4.4E-30 199.6 21.7 272 272-562 146-428 (481)
114 KOG0264 Nucleosome remodeling 99.9 1.3E-25 2.8E-30 210.8 21.4 248 272-561 122-403 (422)
115 KOG1274 WD40 repeat protein [G 99.9 1.4E-24 3E-29 219.6 30.1 269 273-555 12-293 (933)
116 KOG0283 WD40 repeat-containing 99.9 1.2E-25 2.7E-30 226.2 22.3 242 310-562 261-532 (712)
117 KOG2106 Uncharacterized conser 99.9 1.9E-23 4.2E-28 197.9 35.4 325 207-562 96-477 (626)
118 KOG0650 WD40 repeat nucleolar 99.9 1.9E-25 4.1E-30 215.5 22.2 290 202-518 387-732 (733)
119 KOG2096 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 194.6 25.4 276 272-560 84-400 (420)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-23 5.5E-28 203.6 37.3 286 227-542 1-300 (300)
121 KOG1408 WD40 repeat protein [F 99.9 2.4E-25 5.3E-30 218.4 22.2 285 229-522 394-714 (1080)
122 KOG0772 Uncharacterized conser 99.9 8.5E-26 1.9E-30 214.2 18.4 250 273-560 166-443 (641)
123 KOG0294 WD40 repeat-containing 99.9 2.5E-24 5.4E-29 192.8 26.3 260 289-563 4-282 (362)
124 KOG1274 WD40 repeat protein [G 99.9 1E-24 2.2E-29 220.5 26.7 241 312-562 10-262 (933)
125 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.2E-30 218.3 18.9 231 284-562 35-285 (735)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.8E-23 1.7E-27 200.1 36.1 265 286-562 1-279 (300)
127 KOG0267 Microtubule severing p 99.9 6E-26 1.3E-30 223.5 11.3 257 225-513 2-260 (825)
128 KOG1445 Tumor-specific antigen 99.9 5.6E-24 1.2E-28 206.3 22.5 152 401-561 630-797 (1012)
129 KOG2055 WD40 repeat protein [G 99.9 1.7E-23 3.8E-28 196.3 25.0 281 272-562 211-512 (514)
130 KOG1273 WD40 repeat protein [G 99.9 2.9E-23 6.3E-28 185.8 24.4 272 277-561 26-321 (405)
131 KOG0269 WD40 repeat-containing 99.9 3E-24 6.6E-29 213.2 17.8 238 317-563 41-297 (839)
132 KOG0267 Microtubule severing p 99.9 3.8E-25 8.3E-30 217.8 11.1 251 288-552 6-258 (825)
133 KOG1539 WD repeat protein [Gen 99.9 1.8E-21 3.9E-26 195.1 36.7 325 211-562 155-606 (910)
134 KOG2048 WD40 repeat protein [G 99.9 2.4E-21 5.1E-26 190.3 36.3 324 209-562 62-505 (691)
135 KOG0646 WD40 repeat protein [G 99.9 2.8E-23 6E-28 195.5 20.7 229 274-544 81-331 (476)
136 KOG0299 U3 snoRNP-associated p 99.9 7.6E-23 1.7E-27 192.1 23.0 237 273-561 141-409 (479)
137 KOG4378 Nuclear protein COP1 [ 99.9 3.1E-23 6.8E-28 195.9 20.4 239 276-563 36-281 (673)
138 KOG2055 WD40 repeat protein [G 99.9 2.6E-22 5.7E-27 188.5 25.4 284 215-521 213-512 (514)
139 KOG2445 Nuclear pore complex c 99.9 3.7E-22 8.1E-27 178.4 25.0 243 311-560 9-316 (361)
140 KOG0646 WD40 repeat protein [G 99.9 3.8E-22 8.2E-27 187.9 25.0 263 291-562 12-307 (476)
141 KOG4283 Transcription-coupled 99.9 2.9E-22 6.4E-27 177.8 22.4 204 312-524 40-279 (397)
142 KOG2048 WD40 repeat protein [G 99.9 6.1E-21 1.3E-25 187.4 31.7 279 215-560 25-317 (691)
143 KOG2919 Guanine nucleotide-bin 99.9 1.3E-21 2.8E-26 176.0 23.7 284 219-553 53-361 (406)
144 KOG0302 Ribosome Assembly prot 99.9 4.9E-22 1.1E-26 182.1 21.1 256 212-519 148-436 (440)
145 COG2319 FOG: WD40 repeat [Gene 99.9 3.1E-19 6.6E-24 182.8 44.5 327 210-562 60-400 (466)
146 KOG1009 Chromatin assembly com 99.9 2.2E-21 4.7E-26 179.7 24.3 313 216-561 14-371 (434)
147 KOG1034 Transcriptional repres 99.9 3.2E-21 6.8E-26 173.9 24.5 297 209-562 32-383 (385)
148 KOG0307 Vesicle coat complex C 99.9 8.6E-23 1.9E-27 211.8 16.5 242 275-524 65-330 (1049)
149 KOG0302 Ribosome Assembly prot 99.9 6.2E-22 1.3E-26 181.5 19.0 220 309-562 145-378 (440)
150 KOG0639 Transducin-like enhanc 99.9 3.4E-22 7.3E-27 189.2 17.0 237 216-520 466-703 (705)
151 KOG1036 Mitotic spindle checkp 99.9 8E-21 1.7E-25 170.3 24.3 234 274-562 13-262 (323)
152 KOG4328 WD40 protein [Function 99.9 4.5E-21 9.8E-26 180.1 23.5 277 273-559 185-492 (498)
153 KOG0270 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 183.7 18.7 234 285-526 191-454 (463)
154 KOG0642 Cell-cycle nuclear pro 99.9 8.5E-22 1.8E-26 189.7 17.4 265 208-491 287-573 (577)
155 KOG0270 WD40 repeat-containing 99.9 1.4E-20 3.1E-25 176.3 23.5 236 319-562 177-449 (463)
156 KOG1273 WD40 repeat protein [G 99.9 2.8E-20 6E-25 166.9 23.7 276 218-521 26-322 (405)
157 KOG1524 WD40 repeat-containing 99.9 6E-21 1.3E-25 182.3 20.5 272 214-519 13-284 (737)
158 KOG4328 WD40 protein [Function 99.9 3E-20 6.5E-25 174.6 24.8 290 209-521 180-495 (498)
159 COG2319 FOG: WD40 repeat [Gene 99.9 7.2E-18 1.6E-22 172.6 43.3 327 208-562 101-442 (466)
160 KOG0321 WD40 repeat-containing 99.9 2.8E-20 6.1E-25 181.4 22.0 285 219-523 53-393 (720)
161 KOG0321 WD40 repeat-containing 99.9 4E-20 8.7E-25 180.4 23.0 268 285-561 63-390 (720)
162 KOG0307 Vesicle coat complex C 99.9 3.6E-21 7.9E-26 199.8 15.1 275 279-562 11-327 (1049)
163 KOG1538 Uncharacterized conser 99.9 1.8E-19 3.8E-24 176.3 24.6 275 275-561 13-292 (1081)
164 KOG0650 WD40 repeat nucleolar 99.9 2.1E-19 4.5E-24 174.1 24.6 278 271-559 397-732 (733)
165 KOG1007 WD repeat protein TSSC 99.9 9.1E-20 2E-24 161.7 19.9 256 209-521 57-361 (370)
166 KOG1009 Chromatin assembly com 99.9 2.2E-19 4.7E-24 166.6 23.0 293 209-525 59-376 (434)
167 KOG4378 Nuclear protein COP1 [ 99.8 9.3E-20 2E-24 172.7 20.8 264 217-544 36-305 (673)
168 KOG0322 G-protein beta subunit 99.8 3.1E-20 6.7E-25 162.7 16.2 289 203-520 2-322 (323)
169 KOG1587 Cytoplasmic dynein int 99.8 3.5E-19 7.6E-24 180.5 25.9 241 274-522 242-517 (555)
170 KOG0644 Uncharacterized conser 99.8 1.7E-20 3.6E-25 187.8 13.1 281 208-560 183-466 (1113)
171 KOG1963 WD40 repeat protein [G 99.8 2E-17 4.4E-22 167.9 32.3 278 273-562 204-538 (792)
172 KOG0642 Cell-cycle nuclear pro 99.8 3E-19 6.5E-24 172.3 15.4 223 273-528 293-568 (577)
173 KOG4227 WD40 repeat protein [G 99.8 3.1E-18 6.7E-23 157.9 21.3 292 209-521 50-387 (609)
174 KOG0290 Conserved WD40 repeat- 99.8 1E-17 2.2E-22 149.0 23.3 275 275-559 45-362 (364)
175 KOG0303 Actin-binding protein 99.8 4E-18 8.7E-23 157.5 20.0 208 310-561 76-293 (472)
176 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.5E-22 150.7 22.2 235 318-562 52-327 (406)
177 KOG1523 Actin-related protein 99.8 7.1E-18 1.5E-22 152.1 20.1 232 275-554 11-271 (361)
178 KOG1963 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 166.6 26.9 293 213-527 203-545 (792)
179 KOG1007 WD repeat protein TSSC 99.8 1.2E-17 2.6E-22 148.3 20.8 244 309-561 57-360 (370)
180 KOG1538 Uncharacterized conser 99.8 3.8E-16 8.3E-21 153.3 32.8 219 207-427 45-292 (1081)
181 KOG1524 WD40 repeat-containing 99.8 1E-17 2.3E-22 160.3 20.8 262 273-559 13-283 (737)
182 KOG0649 WD40 repeat protein [G 99.8 1.8E-16 4E-21 137.6 26.3 268 276-562 12-317 (325)
183 KOG1517 Guanine nucleotide bin 99.8 2.6E-17 5.6E-22 169.2 23.4 288 212-524 1061-1384(1387)
184 KOG0303 Actin-binding protein 99.8 2.2E-18 4.7E-23 159.3 13.7 160 392-560 75-247 (472)
185 KOG1034 Transcriptional repres 99.8 6E-18 1.3E-22 152.9 16.0 267 214-521 88-383 (385)
186 KOG1587 Cytoplasmic dynein int 99.8 2E-16 4.4E-21 160.6 27.9 257 296-561 222-515 (555)
187 PRK11028 6-phosphogluconolacto 99.8 1.5E-15 3.2E-20 150.6 33.5 272 230-562 5-304 (330)
188 KOG1188 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 145.4 20.4 265 287-560 41-344 (376)
189 KOG0290 Conserved WD40 repeat- 99.8 5.3E-16 1.2E-20 138.1 23.9 271 217-512 46-357 (364)
190 KOG0322 G-protein beta subunit 99.8 4E-17 8.6E-22 143.4 15.9 276 272-561 12-322 (323)
191 KOG1272 WD40-repeat-containing 99.7 5.5E-18 1.2E-22 159.8 11.1 227 319-559 133-359 (545)
192 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.3E-19 134.3 32.1 233 275-522 6-249 (391)
193 PRK01742 tolB translocation pr 99.7 1.5E-16 3.3E-21 162.6 21.6 211 295-561 183-400 (429)
194 PRK01742 tolB translocation pr 99.7 2.6E-16 5.6E-21 160.9 23.0 214 274-544 203-427 (429)
195 KOG1517 Guanine nucleotide bin 99.7 4.4E-16 9.6E-21 160.3 23.4 276 276-561 1066-1380(1387)
196 KOG2139 WD40 repeat protein [G 99.7 4E-15 8.6E-20 136.5 26.8 275 217-561 100-430 (445)
197 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 131.4 22.6 213 317-543 12-257 (325)
198 KOG2110 Uncharacterized conser 99.7 6.4E-15 1.4E-19 135.7 27.4 235 316-562 6-248 (391)
199 KOG1334 WD40 repeat protein [G 99.7 1.3E-16 2.7E-21 151.6 14.5 290 209-523 136-468 (559)
200 KOG2139 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 137.9 21.2 242 275-555 99-368 (445)
201 KOG0771 Prolactin regulatory e 99.7 7.1E-16 1.5E-20 144.5 16.2 196 278-522 148-355 (398)
202 KOG0771 Prolactin regulatory e 99.7 7.9E-15 1.7E-19 137.6 22.7 194 362-561 149-353 (398)
203 PRK11028 6-phosphogluconolacto 99.7 7.1E-14 1.5E-18 138.5 31.0 247 216-521 35-304 (330)
204 KOG1523 Actin-related protein 99.7 5.5E-15 1.2E-19 133.6 20.5 237 215-512 10-269 (361)
205 KOG2111 Uncharacterized conser 99.7 2.6E-13 5.7E-18 122.8 31.2 235 276-523 7-258 (346)
206 KOG4497 Uncharacterized conser 99.7 1.2E-14 2.6E-19 131.7 22.3 303 216-555 49-425 (447)
207 KOG4497 Uncharacterized conser 99.7 1E-14 2.2E-19 132.2 21.1 301 220-559 13-388 (447)
208 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.2E-18 136.1 31.0 306 230-562 9-347 (369)
209 KOG1445 Tumor-specific antigen 99.7 2.3E-15 5E-20 147.1 16.2 234 285-561 590-843 (1012)
210 KOG2394 WD40 protein DMR-N9 [G 99.6 4.6E-15 1E-19 142.7 16.8 220 283-525 182-456 (636)
211 KOG2111 Uncharacterized conser 99.6 1E-13 2.3E-18 125.4 24.3 235 317-562 7-256 (346)
212 PF08662 eIF2A: Eukaryotic tra 99.6 2.7E-14 5.8E-19 128.5 20.6 149 403-562 10-179 (194)
213 PRK05137 tolB translocation pr 99.6 1.7E-13 3.6E-18 140.7 28.8 212 296-561 182-411 (435)
214 KOG4227 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 129.5 21.9 277 272-559 54-384 (609)
215 KOG1188 WD40 repeat protein [G 99.6 1.4E-14 3.1E-19 132.1 16.9 185 369-562 41-242 (376)
216 KOG1310 WD40 repeat protein [G 99.6 2.8E-15 6.1E-20 144.3 12.8 208 307-562 42-303 (758)
217 PRK04922 tolB translocation pr 99.6 1.3E-13 2.9E-18 141.3 25.7 213 296-561 184-410 (433)
218 PRK02889 tolB translocation pr 99.6 9.6E-14 2.1E-18 141.8 24.5 206 296-554 176-392 (427)
219 PRK03629 tolB translocation pr 99.6 5.1E-13 1.1E-17 136.3 29.5 215 275-543 199-428 (429)
220 PRK03629 tolB translocation pr 99.6 5.6E-13 1.2E-17 136.1 29.2 207 296-555 179-396 (429)
221 KOG1240 Protein kinase contain 99.6 2.4E-13 5.2E-18 142.7 26.5 263 206-522 1039-1335(1431)
222 KOG1334 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 139.4 14.2 281 271-560 139-464 (559)
223 PRK05137 tolB translocation pr 99.6 6E-13 1.3E-17 136.7 29.2 215 274-543 201-433 (435)
224 PRK04922 tolB translocation pr 99.6 4.2E-13 9.2E-18 137.6 26.7 213 275-542 204-432 (433)
225 KOG1354 Serine/threonine prote 99.6 7.3E-14 1.6E-18 127.5 18.0 269 274-561 25-358 (433)
226 KOG1272 WD40-repeat-containing 99.6 6.6E-15 1.4E-19 139.2 11.7 269 218-518 132-406 (545)
227 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 136.0 26.3 215 274-543 195-425 (427)
228 PF08662 eIF2A: Eukaryotic tra 99.6 4.8E-13 1E-17 120.4 22.3 118 397-529 58-186 (194)
229 KOG2321 WD40 repeat protein [G 99.6 5E-13 1.1E-17 129.8 23.1 271 274-558 51-339 (703)
230 KOG3881 Uncharacterized conser 99.6 7.5E-13 1.6E-17 123.1 22.7 272 216-542 56-341 (412)
231 KOG0644 Uncharacterized conser 99.6 7.4E-15 1.6E-19 147.9 9.4 234 309-561 184-425 (1113)
232 KOG1310 WD40 repeat protein [G 99.6 6.3E-14 1.4E-18 135.1 14.9 220 271-529 47-311 (758)
233 KOG2394 WD40 protein DMR-N9 [G 99.6 2.5E-13 5.4E-18 130.9 18.3 241 275-541 124-383 (636)
234 KOG2041 WD40 repeat protein [G 99.5 2.3E-12 4.9E-17 128.1 24.5 295 217-562 16-337 (1189)
235 KOG1409 Uncharacterized conser 99.5 1.2E-12 2.5E-17 119.8 19.3 323 209-562 18-394 (404)
236 TIGR02800 propeller_TolB tol-p 99.5 9.3E-12 2E-16 127.9 27.7 206 296-554 170-386 (417)
237 COG5354 Uncharacterized protei 99.5 3.6E-11 7.8E-16 115.7 28.2 312 216-561 33-394 (561)
238 KOG2315 Predicted translation 99.5 2.9E-11 6.3E-16 117.8 27.5 272 275-561 35-389 (566)
239 KOG1240 Protein kinase contain 99.5 3.7E-12 8E-17 134.0 22.7 252 301-561 1034-1333(1431)
240 KOG0974 WD-repeat protein WDR6 99.5 2.2E-12 4.8E-17 133.9 20.2 222 286-522 61-289 (967)
241 KOG1354 Serine/threonine prote 99.5 2E-12 4.4E-17 118.2 17.4 313 216-559 26-431 (433)
242 TIGR02800 propeller_TolB tol-p 99.5 3.7E-11 8.1E-16 123.4 28.4 212 275-541 190-417 (417)
243 PRK00178 tolB translocation pr 99.5 5.7E-11 1.2E-15 122.3 28.3 204 297-553 180-394 (430)
244 KOG2321 WD40 repeat protein [G 99.5 3.3E-11 7.2E-16 117.3 24.3 279 214-522 50-344 (703)
245 PRK04792 tolB translocation pr 99.4 1.2E-10 2.6E-15 119.5 26.9 204 297-553 199-413 (448)
246 KOG4547 WD40 repeat-containing 99.4 6.2E-11 1.3E-15 116.4 23.3 188 324-522 2-221 (541)
247 PRK01029 tolB translocation pr 99.4 2.6E-10 5.6E-15 116.1 28.9 240 296-545 165-427 (428)
248 PRK00178 tolB translocation pr 99.4 1.2E-10 2.7E-15 119.8 26.4 215 275-543 199-428 (430)
249 KOG2314 Translation initiation 99.4 1.9E-10 4E-15 111.8 25.2 314 219-562 214-573 (698)
250 KOG2315 Predicted translation 99.4 1.2E-10 2.6E-15 113.6 23.2 293 217-543 75-411 (566)
251 KOG3881 Uncharacterized conser 99.4 8.2E-11 1.8E-15 109.7 21.0 238 316-562 56-320 (412)
252 PF02239 Cytochrom_D1: Cytochr 99.4 9.2E-10 2E-14 109.2 30.0 267 287-562 6-302 (369)
253 PF10282 Lactonase: Lactonase, 99.3 3.5E-08 7.5E-13 98.1 38.7 265 289-562 2-322 (345)
254 KOG0280 Uncharacterized conser 99.3 1E-10 2.2E-15 105.2 17.9 181 371-560 88-282 (339)
255 KOG0974 WD-repeat protein WDR6 99.3 4.3E-11 9.3E-16 124.5 17.9 199 216-429 88-289 (967)
256 PF04762 IKI3: IKI3 family; I 99.3 2.4E-09 5.2E-14 117.7 32.2 274 274-562 75-379 (928)
257 KOG2041 WD40 repeat protein [G 99.3 9E-10 1.9E-14 110.1 25.8 223 209-451 65-319 (1189)
258 KOG2314 Translation initiation 99.3 4.7E-10 1E-14 109.1 23.2 274 277-562 213-525 (698)
259 KOG4547 WD40 repeat-containing 99.3 5.5E-10 1.2E-14 109.8 23.8 224 225-496 3-241 (541)
260 PRK04792 tolB translocation pr 99.3 3.5E-10 7.5E-15 116.1 23.7 215 275-543 218-447 (448)
261 PF04762 IKI3: IKI3 family; I 99.3 1.7E-08 3.7E-13 111.1 37.1 322 215-561 75-518 (928)
262 COG5354 Uncharacterized protei 99.3 2.7E-09 5.9E-14 103.0 26.7 300 216-554 72-421 (561)
263 KOG1064 RAVE (regulator of V-A 99.3 1.9E-11 4E-16 133.0 12.5 201 211-488 2204-2407(2439)
264 PF10282 Lactonase: Lactonase, 99.3 2.1E-07 4.5E-12 92.6 40.6 258 275-540 37-345 (345)
265 COG5170 CDC55 Serine/threonine 99.3 2.1E-10 4.5E-15 103.8 15.9 266 274-558 26-363 (460)
266 PRK01029 tolB translocation pr 99.3 3.4E-09 7.5E-14 107.9 26.3 214 338-561 166-402 (428)
267 TIGR03300 assembly_YfgL outer 99.2 5.8E-08 1.3E-12 98.2 35.0 293 226-559 64-376 (377)
268 PLN02919 haloacid dehalogenase 99.2 1.6E-08 3.6E-13 113.3 32.0 249 278-562 571-888 (1057)
269 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.8E-07 3.9E-12 90.9 34.9 239 282-531 53-340 (352)
270 PF08513 LisH: LisH; InterPro 99.2 2.6E-12 5.7E-17 73.3 0.4 27 7-33 1-27 (27)
271 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.7E-15 126.8 12.5 222 285-531 2179-2408(2439)
272 KOG0280 Uncharacterized conser 99.2 4.4E-09 9.5E-14 94.8 19.5 250 214-522 68-334 (339)
273 KOG4190 Uncharacterized conser 99.1 9E-11 2E-15 113.7 7.2 182 308-531 728-916 (1034)
274 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-06 2.3E-11 85.5 34.9 245 296-562 27-330 (352)
275 PLN02919 haloacid dehalogenase 99.1 6.4E-08 1.4E-12 108.7 29.6 265 220-525 572-892 (1057)
276 PRK04043 tolB translocation pr 99.1 1.7E-07 3.6E-12 95.0 28.9 201 297-553 170-388 (419)
277 COG2706 3-carboxymuconate cycl 99.1 1.6E-06 3.5E-11 81.2 32.2 258 295-561 15-320 (346)
278 KOG0882 Cyclophilin-related pe 99.0 1.1E-08 2.5E-13 97.3 16.6 267 282-559 16-369 (558)
279 KOG1920 IkappaB kinase complex 99.0 3.6E-07 7.7E-12 97.6 29.0 273 274-561 68-364 (1265)
280 KOG0309 Conserved WD40 repeat- 99.0 5.9E-09 1.3E-13 104.8 14.5 291 216-522 25-340 (1081)
281 PF15492 Nbas_N: Neuroblastoma 99.0 7.8E-07 1.7E-11 80.8 26.7 42 490-531 228-269 (282)
282 TIGR03300 assembly_YfgL outer 99.0 3.6E-07 7.8E-12 92.4 27.7 259 286-562 65-338 (377)
283 COG4946 Uncharacterized protei 99.0 3.5E-07 7.6E-12 87.9 23.9 214 323-551 274-507 (668)
284 PF08450 SGL: SMP-30/Gluconola 99.0 6.6E-06 1.4E-10 77.8 32.9 222 279-552 4-245 (246)
285 PRK04043 tolB translocation pr 99.0 5.8E-07 1.3E-11 91.1 26.7 192 276-522 189-401 (419)
286 COG2706 3-carboxymuconate cycl 98.9 1.2E-05 2.6E-10 75.5 32.7 253 214-527 38-329 (346)
287 KOG1409 Uncharacterized conser 98.9 5.7E-08 1.2E-12 89.6 15.6 237 274-523 24-272 (404)
288 KOG3914 WD repeat protein WDR4 98.9 3.6E-08 7.7E-13 92.9 13.9 165 220-437 67-232 (390)
289 PF13360 PQQ_2: PQQ-like domai 98.9 2.6E-06 5.7E-11 80.1 25.9 217 295-528 2-237 (238)
290 KOG4532 WD40-like repeat conta 98.8 8E-07 1.7E-11 79.4 20.2 215 327-552 84-322 (344)
291 KOG4190 Uncharacterized conser 98.8 1.6E-08 3.4E-13 98.5 10.3 272 273-558 734-1032(1034)
292 PRK11138 outer membrane biogen 98.8 1.4E-05 3E-10 81.3 32.3 251 286-561 120-393 (394)
293 KOG3914 WD repeat protein WDR4 98.8 9.3E-08 2E-12 90.2 14.5 86 392-487 145-231 (390)
294 COG4946 Uncharacterized protei 98.8 9.2E-06 2E-10 78.4 27.8 142 275-417 360-507 (668)
295 KOG0309 Conserved WD40 repeat- 98.8 7.8E-08 1.7E-12 96.9 13.8 276 275-561 25-338 (1081)
296 COG5170 CDC55 Serine/threonine 98.8 1.4E-07 3E-12 85.8 14.2 275 216-519 27-365 (460)
297 KOG1832 HIV-1 Vpr-binding prot 98.8 9.4E-09 2E-13 105.3 7.2 252 273-550 1100-1377(1516)
298 PF00400 WD40: WD domain, G-be 98.8 2.3E-08 5.1E-13 64.1 6.3 39 481-519 1-39 (39)
299 KOG1912 WD40 repeat protein [G 98.8 5.7E-07 1.2E-11 91.5 18.8 235 277-522 18-305 (1062)
300 KOG2695 WD40 repeat protein [G 98.8 5E-08 1.1E-12 90.0 9.8 147 375-532 231-387 (425)
301 KOG4532 WD40-like repeat conta 98.7 8.3E-06 1.8E-10 73.1 20.8 229 285-521 83-331 (344)
302 PF00400 WD40: WD domain, G-be 98.6 7.7E-08 1.7E-12 61.7 5.7 38 389-426 2-39 (39)
303 KOG1912 WD40 repeat protein [G 98.6 6E-07 1.3E-11 91.3 14.5 159 400-560 17-184 (1062)
304 KOG1275 PAB-dependent poly(A) 98.6 9E-07 1.9E-11 91.7 15.8 183 326-520 146-341 (1118)
305 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.3E-10 72.6 21.8 192 218-438 46-269 (282)
306 KOG0882 Cyclophilin-related pe 98.6 9E-07 2E-11 84.6 14.1 237 314-562 8-305 (558)
307 KOG2066 Vacuolar assembly/sort 98.6 2.8E-06 6.1E-11 87.1 17.9 176 368-562 49-233 (846)
308 PF13360 PQQ_2: PQQ-like domai 98.6 4.2E-05 9.1E-10 71.8 25.2 213 336-562 2-230 (238)
309 KOG2695 WD40 repeat protein [G 98.6 3.2E-07 6.8E-12 84.8 9.3 156 280-437 217-385 (425)
310 KOG2066 Vacuolar assembly/sort 98.6 1.2E-05 2.5E-10 82.8 21.2 180 277-523 42-235 (846)
311 PF07433 DUF1513: Protein of u 98.5 0.00044 9.4E-09 65.2 27.9 246 218-515 7-279 (305)
312 KOG4714 Nucleoporin [Nuclear s 98.5 7.1E-06 1.5E-10 73.2 15.0 160 310-480 84-255 (319)
313 KOG1645 RING-finger-containing 98.5 3.4E-05 7.4E-10 73.2 20.2 244 272-521 191-461 (463)
314 KOG3617 WD40 and TPR repeat-co 98.5 9.4E-06 2E-10 83.6 17.6 107 220-345 20-131 (1416)
315 KOG4714 Nucleoporin [Nuclear s 98.5 3.5E-06 7.7E-11 75.1 12.8 164 210-429 84-255 (319)
316 KOG1920 IkappaB kinase complex 98.4 0.00032 6.9E-09 75.8 28.6 234 216-480 69-323 (1265)
317 KOG1832 HIV-1 Vpr-binding prot 98.4 1.8E-07 4E-12 96.1 4.0 217 309-550 1095-1319(1516)
318 PRK02888 nitrous-oxide reducta 98.4 0.00024 5.3E-09 73.1 26.0 172 378-562 215-404 (635)
319 KOG1275 PAB-dependent poly(A) 98.3 1.4E-05 3E-10 83.3 15.4 178 369-560 148-340 (1118)
320 KOG3621 WD40 repeat-containing 98.3 8.8E-05 1.9E-09 75.5 20.8 147 214-376 32-189 (726)
321 KOG1645 RING-finger-containing 98.3 6.5E-05 1.4E-09 71.3 17.9 240 310-561 188-460 (463)
322 KOG2114 Vacuolar assembly/sort 98.3 0.00023 4.9E-09 74.1 23.3 212 281-530 30-252 (933)
323 PRK11138 outer membrane biogen 98.3 0.00041 8.9E-09 70.5 25.4 260 286-561 69-352 (394)
324 PF07433 DUF1513: Protein of u 98.3 0.0025 5.3E-08 60.2 27.1 245 279-556 9-279 (305)
325 PF08450 SGL: SMP-30/Gluconola 98.2 0.0026 5.6E-08 60.0 28.1 205 220-449 4-233 (246)
326 cd00216 PQQ_DH Dehydrogenases 98.2 0.0058 1.3E-07 63.8 32.3 249 287-548 111-453 (488)
327 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0026 5.6E-08 63.5 27.8 257 275-553 43-348 (353)
328 cd00216 PQQ_DH Dehydrogenases 98.2 0.0012 2.7E-08 68.8 25.9 271 287-562 62-424 (488)
329 COG0823 TolB Periplasmic compo 98.1 0.00043 9.3E-09 70.0 21.3 206 297-554 174-391 (425)
330 PF11768 DUF3312: Protein of u 98.0 9.5E-05 2.1E-09 74.2 13.7 114 438-562 257-400 (545)
331 KOG2114 Vacuolar assembly/sort 98.0 0.001 2.2E-08 69.5 21.2 187 211-402 60-260 (933)
332 PF04053 Coatomer_WDAD: Coatom 98.0 0.0045 9.8E-08 62.9 24.6 215 314-561 31-261 (443)
333 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.04 8.6E-07 57.9 33.5 75 471-546 441-517 (527)
334 PRK02888 nitrous-oxide reducta 97.9 0.0012 2.6E-08 68.2 20.1 212 323-550 200-449 (635)
335 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0084 1.8E-07 60.9 26.2 198 339-544 63-271 (410)
336 COG0823 TolB Periplasmic compo 97.9 0.00032 7E-09 70.8 15.7 144 399-552 193-345 (425)
337 PF04841 Vps16_N: Vps16, N-ter 97.9 0.023 5.1E-07 57.7 29.0 190 297-503 62-271 (410)
338 KOG1008 Uncharacterized conser 97.9 4.5E-06 9.8E-11 83.5 2.2 194 275-479 57-275 (783)
339 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.03 6.4E-07 56.1 28.3 88 399-488 308-407 (415)
340 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0055 1.2E-07 61.2 23.5 273 215-508 42-344 (353)
341 PF11768 DUF3312: Protein of u 97.9 8E-05 1.7E-09 74.7 9.9 73 489-562 257-329 (545)
342 PF04053 Coatomer_WDAD: Coatom 97.9 0.0005 1.1E-08 69.7 15.8 142 398-562 32-173 (443)
343 KOG3617 WD40 and TPR repeat-co 97.8 0.00073 1.6E-08 70.2 15.5 108 278-388 19-133 (1416)
344 smart00667 LisH Lissencephaly 97.8 7.2E-06 1.6E-10 50.5 0.7 31 6-36 3-33 (34)
345 KOG4640 Anaphase-promoting com 97.8 8.7E-05 1.9E-09 74.6 8.5 70 492-562 21-92 (665)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.047 1E-06 54.8 27.5 290 217-559 3-332 (395)
347 PF06433 Me-amine-dh_H: Methyl 97.7 0.021 4.6E-07 54.8 23.3 252 279-533 40-332 (342)
348 KOG4640 Anaphase-promoting com 97.7 0.00022 4.7E-09 71.9 9.6 93 440-542 20-115 (665)
349 KOG3621 WD40 repeat-containing 97.7 0.00096 2.1E-08 68.2 14.0 119 276-429 35-155 (726)
350 PF00780 CNH: CNH domain; Int 97.6 0.065 1.4E-06 51.4 26.4 225 285-532 6-266 (275)
351 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.044 9.5E-07 49.7 22.0 205 327-550 23-237 (354)
352 COG3391 Uncharacterized conser 97.6 0.098 2.1E-06 52.7 30.5 186 366-562 84-283 (381)
353 smart00320 WD40 WD40 repeats. 97.6 0.00021 4.6E-09 44.5 5.9 39 481-519 2-40 (40)
354 PF14583 Pectate_lyase22: Olig 97.6 0.092 2E-06 51.5 27.3 271 281-561 42-380 (386)
355 PRK13616 lipoprotein LpqB; Pro 97.5 0.0043 9.4E-08 65.6 17.5 179 377-561 328-524 (591)
356 smart00320 WD40 WD40 repeats. 97.5 0.00022 4.7E-09 44.4 5.0 36 208-243 5-40 (40)
357 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.6E-07 45.6 15.7 91 462-558 16-110 (111)
358 PF08596 Lgl_C: Lethal giant l 97.4 0.057 1.2E-06 54.3 23.0 235 317-561 3-289 (395)
359 PF03178 CPSF_A: CPSF A subuni 97.4 0.053 1.2E-06 53.4 22.8 208 338-559 3-262 (321)
360 KOG1008 Uncharacterized conser 97.4 3.9E-05 8.5E-10 77.0 0.3 182 369-562 71-275 (783)
361 PF06977 SdiA-regulated: SdiA- 97.4 0.11 2.5E-06 48.3 26.0 198 310-518 16-247 (248)
362 PF02897 Peptidase_S9_N: Proly 97.2 0.3 6.5E-06 50.0 29.7 240 217-483 125-408 (414)
363 COG3386 Gluconolactonase [Carb 97.2 0.22 4.7E-06 48.2 24.8 146 399-553 111-276 (307)
364 COG3386 Gluconolactonase [Carb 97.2 0.23 5E-06 48.0 24.5 218 282-510 32-274 (307)
365 COG3391 Uncharacterized conser 97.2 0.32 6.9E-06 49.1 30.5 217 319-544 77-310 (381)
366 PF08553 VID27: VID27 cytoplas 97.2 0.01 2.2E-07 63.8 15.4 135 375-520 501-646 (794)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.43 9.3E-06 50.3 27.5 158 327-484 120-338 (527)
368 PF08553 VID27: VID27 cytoplas 97.2 0.017 3.7E-07 62.2 16.8 144 411-561 494-646 (794)
369 KOG2395 Protein involved in va 97.1 0.013 2.8E-07 58.4 14.0 138 370-520 348-499 (644)
370 KOG2079 Vacuolar assembly/sort 97.1 0.018 3.9E-07 62.2 15.9 85 286-370 99-188 (1206)
371 KOG2444 WD40 repeat protein [G 97.1 0.0021 4.6E-08 57.1 7.6 106 410-522 70-178 (238)
372 PRK13616 lipoprotein LpqB; Pro 97.1 0.053 1.2E-06 57.5 19.4 182 216-420 350-560 (591)
373 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.066 1.4E-06 42.4 14.8 90 411-516 16-109 (111)
374 PF06977 SdiA-regulated: SdiA- 97.0 0.14 3.1E-06 47.6 19.1 194 210-422 16-244 (248)
375 KOG1897 Damage-specific DNA bi 97.0 0.8 1.7E-05 49.7 32.8 320 216-562 531-898 (1096)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.11 2.4E-06 52.1 18.9 46 486-531 302-347 (415)
377 PF06433 Me-amine-dh_H: Methyl 96.9 0.47 1E-05 45.8 25.0 255 296-562 17-320 (342)
378 PRK13684 Ycf48-like protein; P 96.8 0.59 1.3E-05 46.1 29.5 148 398-559 172-328 (334)
379 PF10647 Gmad1: Lipoprotein Lp 96.8 0.15 3.1E-06 48.2 18.2 144 400-555 25-188 (253)
380 KOG2395 Protein involved in va 96.7 0.043 9.3E-07 54.8 13.9 144 413-562 349-500 (644)
381 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.47 1E-05 43.3 26.7 257 287-561 24-299 (354)
382 PF02897 Peptidase_S9_N: Proly 96.7 0.95 2.1E-05 46.3 29.8 225 319-553 127-391 (414)
383 KOG2079 Vacuolar assembly/sort 96.7 0.0068 1.5E-07 65.2 8.5 93 463-555 101-198 (1206)
384 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.4E-07 38.9 5.5 34 491-525 11-44 (47)
385 PF14870 PSII_BNR: Photosynthe 96.4 1 2.2E-05 43.4 30.1 266 274-557 16-299 (302)
386 PF12894 Apc4_WD40: Anaphase-p 96.4 0.014 3E-07 38.5 5.6 34 274-307 11-44 (47)
387 KOG4441 Proteins containing BT 96.3 0.64 1.4E-05 49.4 20.9 222 285-522 284-547 (571)
388 KOG4499 Ca2+-binding protein R 96.3 0.18 4E-06 45.2 13.7 137 280-449 114-262 (310)
389 PHA02713 hypothetical protein; 96.1 0.49 1.1E-05 50.3 19.1 185 326-524 303-536 (557)
390 PF00780 CNH: CNH domain; Int 96.1 1.4 3E-05 42.2 26.8 225 226-490 6-266 (275)
391 PF12234 Rav1p_C: RAVE protein 96.1 0.27 6E-06 51.8 16.2 92 467-560 47-154 (631)
392 PF03178 CPSF_A: CPSF A subuni 96.0 1.8 3.8E-05 42.6 24.2 139 286-428 42-202 (321)
393 TIGR03074 PQQ_membr_DH membran 96.0 2.3 4.9E-05 46.8 23.2 159 369-529 261-485 (764)
394 KOG1916 Nuclear protein, conta 95.9 0.0061 1.3E-07 64.2 3.2 124 209-344 126-264 (1283)
395 TIGR02604 Piru_Ver_Nterm putat 95.8 0.61 1.3E-05 46.8 17.4 143 400-553 15-204 (367)
396 PF15390 DUF4613: Domain of un 95.6 0.41 8.8E-06 49.0 14.6 148 399-560 20-184 (671)
397 PHA02713 hypothetical protein; 95.4 1.5 3.2E-05 46.8 18.9 93 338-432 273-379 (557)
398 KOG2444 WD40 repeat protein [G 95.1 0.076 1.7E-06 47.4 6.8 103 327-429 70-178 (238)
399 PF15390 DUF4613: Domain of un 94.9 1.5 3.2E-05 45.1 16.1 147 359-522 21-187 (671)
400 KOG1916 Nuclear protein, conta 94.8 0.02 4.3E-07 60.5 2.9 113 406-521 243-374 (1283)
401 PF05096 Glu_cyclase_2: Glutam 94.7 3.7 8E-05 38.4 23.3 179 318-509 47-249 (264)
402 KOG4441 Proteins containing BT 94.6 2.5 5.4E-05 45.0 18.1 185 327-524 285-502 (571)
403 KOG3630 Nuclear pore complex, 94.3 0.43 9.4E-06 52.4 11.4 136 316-451 101-254 (1405)
404 PF14870 PSII_BNR: Photosynthe 94.2 5.6 0.00012 38.4 28.0 106 438-557 142-256 (302)
405 PF10168 Nup88: Nuclear pore c 94.0 1.2 2.5E-05 48.5 14.2 92 317-429 86-180 (717)
406 PF05096 Glu_cyclase_2: Glutam 94.0 5.4 0.00012 37.3 20.9 178 219-416 48-249 (264)
407 COG3490 Uncharacterized protei 93.9 5.7 0.00012 37.2 16.5 100 220-334 72-180 (366)
408 COG3490 Uncharacterized protei 93.9 2.3 4.9E-05 39.7 13.4 129 403-550 40-179 (366)
409 PHA03098 kelch-like protein; P 93.7 2.5 5.5E-05 44.9 16.3 93 338-432 312-418 (534)
410 PF10313 DUF2415: Uncharacteri 93.7 0.24 5.3E-06 31.6 5.0 31 492-522 1-34 (43)
411 KOG2377 Uncharacterized conser 93.7 1.6 3.4E-05 43.3 12.9 132 285-417 32-172 (657)
412 KOG3630 Nuclear pore complex, 93.6 0.36 7.9E-06 52.9 9.1 152 217-375 102-261 (1405)
413 PF07995 GSDH: Glucose / Sorbo 93.5 8.5 0.00018 37.9 27.4 49 277-326 4-59 (331)
414 PF07995 GSDH: Glucose / Sorbo 93.3 9.2 0.0002 37.7 26.4 54 463-516 273-330 (331)
415 PF10647 Gmad1: Lipoprotein Lp 93.3 7.4 0.00016 36.7 21.0 153 275-475 24-192 (253)
416 PF12234 Rav1p_C: RAVE protein 93.1 3.3 7.2E-05 43.9 15.2 110 402-520 33-155 (631)
417 COG3204 Uncharacterized protei 92.9 4 8.6E-05 38.4 13.6 115 438-562 83-210 (316)
418 COG5290 IkappaB kinase complex 92.9 1.7 3.7E-05 46.1 12.3 133 278-411 205-349 (1243)
419 TIGR03074 PQQ_membr_DH membran 92.8 18 0.0004 39.9 22.7 150 410-562 260-477 (764)
420 PF05694 SBP56: 56kDa selenium 92.8 6.4 0.00014 39.5 15.6 195 227-430 87-344 (461)
421 KOG4499 Ca2+-binding protein R 92.8 7.4 0.00016 35.3 19.5 136 399-543 109-264 (310)
422 COG3204 Uncharacterized protei 92.8 8.9 0.00019 36.2 21.0 160 312-479 82-263 (316)
423 TIGR02604 Piru_Ver_Nterm putat 92.5 7.4 0.00016 39.0 16.7 101 400-511 73-203 (367)
424 PF07569 Hira: TUP1-like enhan 92.2 0.87 1.9E-05 41.8 8.7 64 499-563 18-96 (219)
425 COG5167 VID27 Protein involved 91.6 11 0.00024 38.2 15.7 149 408-562 477-632 (776)
426 PRK10115 protease 2; Provision 91.5 25 0.00054 38.6 31.1 235 276-524 128-397 (686)
427 PHA02790 Kelch-like protein; P 91.5 12 0.00027 39.0 17.4 103 328-432 273-388 (480)
428 KOG2247 WD40 repeat-containing 91.5 0.033 7.1E-07 55.1 -1.5 133 318-452 37-171 (615)
429 PHA03098 kelch-like protein; P 90.9 11 0.00025 40.0 16.9 144 285-432 294-468 (534)
430 TIGR02276 beta_rpt_yvtn 40-res 90.8 1.4 3.1E-05 27.8 6.2 40 501-540 1-41 (42)
431 PF12657 TFIIIC_delta: Transcr 90.3 2.4 5.1E-05 37.3 9.3 36 442-480 87-122 (173)
432 KOG4460 Nuclear pore complex, 90.3 5.2 0.00011 40.6 12.2 94 317-431 105-201 (741)
433 COG3823 Glutamine cyclotransfe 90.1 11 0.00023 33.7 12.6 172 226-416 55-247 (262)
434 PRK10115 protease 2; Provision 90.1 33 0.00072 37.6 34.3 193 216-428 127-344 (686)
435 KOG2280 Vacuolar assembly/sort 90.0 17 0.00036 38.9 16.0 187 337-530 64-255 (829)
436 KOG2377 Uncharacterized conser 90.0 12 0.00027 37.4 14.2 119 395-524 63-188 (657)
437 PF10313 DUF2415: Uncharacteri 89.6 1.6 3.5E-05 27.9 5.3 31 399-429 1-34 (43)
438 PF14583 Pectate_lyase22: Olig 89.0 26 0.00056 34.9 30.4 49 472-520 321-380 (386)
439 COG5167 VID27 Protein involved 88.3 6.5 0.00014 39.8 11.2 142 370-521 482-632 (776)
440 PHA02790 Kelch-like protein; P 88.0 37 0.00081 35.5 17.6 142 285-432 271-427 (480)
441 KOG2280 Vacuolar assembly/sort 87.8 43 0.00093 36.0 19.0 51 295-346 63-113 (829)
442 PF07676 PD40: WD40-like Beta 87.7 2.8 6.1E-05 26.0 5.8 31 488-518 5-38 (39)
443 PF14727 PHTB1_N: PTHB1 N-term 87.3 36 0.00079 34.6 32.6 142 285-427 36-203 (418)
444 KOG1897 Damage-specific DNA bi 87.2 54 0.0012 36.4 32.9 274 218-521 586-898 (1096)
445 PF12657 TFIIIC_delta: Transcr 87.0 7.7 0.00017 34.1 10.2 31 275-305 86-122 (173)
446 KOG4460 Nuclear pore complex, 86.9 9.9 0.00021 38.7 11.5 70 493-562 105-198 (741)
447 TIGR03606 non_repeat_PQQ dehyd 86.7 41 0.00089 34.6 19.9 55 398-452 29-90 (454)
448 PF14781 BBS2_N: Ciliary BBSom 85.1 20 0.00044 29.6 13.4 120 403-529 3-133 (136)
449 PF10168 Nup88: Nuclear pore c 84.9 66 0.0014 35.4 24.1 73 275-347 85-181 (717)
450 KOG3616 Selective LIM binding 84.2 61 0.0013 34.8 16.0 72 218-309 17-88 (1636)
451 PF08728 CRT10: CRT10; InterP 83.9 11 0.00025 40.5 11.2 100 462-562 115-246 (717)
452 PRK13613 lipoprotein LpqB; Pro 83.7 68 0.0015 34.5 18.2 151 390-551 353-525 (599)
453 PF08728 CRT10: CRT10; InterP 83.6 18 0.0004 39.0 12.6 110 365-478 111-245 (717)
454 PF07250 Glyoxal_oxid_N: Glyox 83.5 17 0.00036 33.8 10.9 145 381-530 49-206 (243)
455 PLN00033 photosystem II stabil 83.2 55 0.0012 33.1 33.0 143 401-557 241-394 (398)
456 PF07569 Hira: TUP1-like enhan 83.1 12 0.00027 34.3 9.9 70 282-352 18-102 (219)
457 COG5290 IkappaB kinase complex 82.9 34 0.00073 37.0 13.7 217 313-550 110-355 (1243)
458 PF13449 Phytase-like: Esteras 82.5 52 0.0011 32.3 19.8 142 399-550 20-232 (326)
459 KOG1983 Tomosyn and related SN 82.4 61 0.0013 37.2 16.9 31 276-306 37-67 (993)
460 PF11715 Nup160: Nucleoporin N 82.1 7 0.00015 41.7 9.2 72 284-355 156-258 (547)
461 PRK13684 Ycf48-like protein; P 81.8 56 0.0012 32.2 29.1 150 357-519 172-329 (334)
462 PF14269 Arylsulfotran_2: Aryl 81.3 17 0.00036 35.2 10.6 91 470-560 95-218 (299)
463 PF05694 SBP56: 56kDa selenium 80.9 67 0.0015 32.5 24.7 220 326-551 86-392 (461)
464 PF12768 Rax2: Cortical protei 79.6 59 0.0013 31.1 13.8 131 337-468 16-169 (281)
465 TIGR02276 beta_rpt_yvtn 40-res 79.6 12 0.00027 23.3 6.5 38 461-499 4-41 (42)
466 COG1506 DAP2 Dipeptidyl aminop 79.1 52 0.0011 35.7 14.7 149 396-550 57-233 (620)
467 KOG2247 WD40 repeat-containing 78.7 0.34 7.4E-06 48.3 -1.9 143 279-424 39-184 (615)
468 COG1506 DAP2 Dipeptidyl aminop 78.2 1.1E+02 0.0023 33.3 24.2 161 274-453 59-228 (620)
469 PF03088 Str_synth: Strictosid 77.7 22 0.00048 27.1 8.1 44 509-552 33-76 (89)
470 PF11715 Nup160: Nucleoporin N 77.4 9.8 0.00021 40.6 8.5 37 493-529 216-256 (547)
471 PF14727 PHTB1_N: PTHB1 N-term 76.2 95 0.0021 31.6 32.1 59 462-522 301-361 (418)
472 PF05935 Arylsulfotrans: Aryls 75.3 1.1E+02 0.0023 32.1 15.2 151 285-438 114-311 (477)
473 KOG4659 Uncharacterized conser 75.1 1.7E+02 0.0037 34.0 20.1 23 534-556 663-685 (1899)
474 PF07676 PD40: WD40-like Beta 74.8 12 0.00026 23.1 5.1 29 397-425 7-38 (39)
475 KOG3616 Selective LIM binding 73.6 7.5 0.00016 41.2 5.9 77 275-354 15-91 (1636)
476 KOG1898 Splicing factor 3b, su 73.5 1.7E+02 0.0036 33.2 23.0 31 216-246 583-619 (1205)
477 smart00564 PQQ beta-propeller 73.3 8.4 0.00018 22.6 4.0 25 505-529 8-32 (33)
478 PF10214 Rrn6: RNA polymerase 72.1 1.7E+02 0.0037 32.7 20.6 28 400-427 147-175 (765)
479 COG3823 Glutamine cyclotransfe 71.8 77 0.0017 28.6 14.2 100 326-428 55-158 (262)
480 PLN00033 photosystem II stabil 71.6 1.2E+02 0.0026 30.7 26.7 107 398-518 280-396 (398)
481 KOG1900 Nuclear pore complex, 71.2 62 0.0013 37.2 12.5 143 415-561 94-271 (1311)
482 PF08801 Nucleoporin_N: Nup133 69.8 1E+02 0.0023 31.5 13.6 29 494-522 192-220 (422)
483 PF01011 PQQ: PQQ enzyme repea 69.3 12 0.00027 23.1 4.2 28 506-533 3-30 (38)
484 TIGR03118 PEPCTERM_chp_1 conse 68.4 1.2E+02 0.0025 29.3 27.0 226 219-450 26-307 (336)
485 PF14761 HPS3_N: Hermansky-Pud 67.8 22 0.00047 32.1 6.9 59 504-562 29-96 (215)
486 PF12768 Rax2: Cortical protei 65.0 82 0.0018 30.1 10.6 54 471-524 16-75 (281)
487 PF03022 MRJP: Major royal jel 64.7 1.4E+02 0.003 28.8 19.9 163 338-510 35-254 (287)
488 COG4590 ABC-type uncharacteriz 64.3 47 0.001 33.4 8.9 155 275-432 221-390 (733)
489 PF01731 Arylesterase: Arylest 62.8 44 0.00096 25.3 6.8 49 471-522 36-85 (86)
490 TIGR03118 PEPCTERM_chp_1 conse 62.8 1.5E+02 0.0032 28.6 25.5 223 275-501 23-307 (336)
491 PF12341 DUF3639: Protein of u 62.5 23 0.0005 20.1 3.8 25 493-519 3-27 (27)
492 PF09398 FOP_dimer: FOP N term 62.4 3.5 7.5E-05 30.7 0.7 30 9-38 21-50 (81)
493 smart00564 PQQ beta-propeller 62.0 21 0.00045 20.9 4.1 25 463-487 8-32 (33)
494 PF01436 NHL: NHL repeat; Int 61.9 22 0.00047 20.2 3.9 25 535-559 4-28 (28)
495 PRK13615 lipoprotein LpqB; Pro 61.2 2.3E+02 0.005 30.2 17.8 136 402-550 337-487 (557)
496 PRK13614 lipoprotein LpqB; Pro 60.9 2.4E+02 0.0051 30.2 18.4 164 377-551 320-504 (573)
497 PF08801 Nucleoporin_N: Nup133 59.7 2.1E+02 0.0045 29.2 15.0 29 534-562 191-219 (422)
498 KOG2659 LisH motif-containing 59.5 5 0.00011 36.4 1.3 55 3-57 23-78 (228)
499 COG4880 Secreted protein conta 58.9 2.1E+02 0.0045 28.9 14.7 111 409-527 482-598 (603)
500 KOG4772 Predicted tRNA-splicin 58.7 5.1 0.00011 37.8 1.3 15 10-24 155-169 (364)
No 1
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-106 Score=749.75 Aligned_cols=520 Identities=57% Similarity=0.945 Sum_probs=431.5
Q ss_pred CCcCccchhhhhHHHHHhcCCceehhccccccCCccCCCCCCCCCchhHHHHHHhhheeeeeeeccCCCCCCCccccccc
Q 008496 2 SSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFL 81 (563)
Q Consensus 2 ~~its~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~~~~~~~~ip~gaLv~~~qKgl~y~~~e~~~~~~~~~~~~~~~~~ 81 (563)
.|||||||||||||||||+||.||||+|++|++|++++++++.|||||||+||||||||+|+|.++.+++...+.++..+
T Consensus 1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~ 80 (524)
T KOG0273|consen 1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESL 80 (524)
T ss_pred CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCcccccccccc
Confidence 38999999999999999999999999999999999999998999999999999999999999999999988887888899
Q ss_pred cccccccccHHHHHHHHHHHhhccCCCCCCCCccccCccccccchhhHhHHHHHHhhhhhhhhcccCCcccccCCCCCcc
Q 008496 82 QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDK 161 (563)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
.+++++.+++++++++...++...++... + .+..+.++... ..++..+..+++ .+.
T Consensus 81 ~~~d~v~~~~~ql~~~~~~e~~s~~~~~~----------------~--~~~~~~~~~~s----~s~~ag~~~~~d--~a~ 136 (524)
T KOG0273|consen 81 SLEDLVMEDVVQLRQQAFREKLSEEQFCA----------------Q--LKIAQDKESGS----TSTPAGSISQRD--GAK 136 (524)
T ss_pred chhhhccccccccchhhhhhhccccchhh----------------h--hhhhhhhccCC----cCCCCCcccccc--chh
Confidence 99999999888876432222111110000 0 00000000000 000000000000 000
Q ss_pred chhhhhhccccCCCcccccccCCCCCCcccccccCCccceecCCCceeEecCCCCceEEEEECCCCC-EEEEeeCCCcEE
Q 008496 162 EMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTAR 240 (563)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~ 240 (563)
.+.. ....++.....-....+++++.. ...||+..+.+++ |+.+|++|+|+|-.. +|++|+.|.++|
T Consensus 137 ~~er------~~n~eed~a~~I~~~~e~~~i~~-----~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ar 204 (524)
T KOG0273|consen 137 TGER------TSNGEEDKAMSIDVHTEPMEIDG-----GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTAR 204 (524)
T ss_pred hcch------hcccccCccccccccccceeecc-----cccccccceeecc-CCCceEEEecCchhhhhhhccCCcccee
Confidence 0000 00000000000011223333332 3468888888888 999999999999755 999999999999
Q ss_pred EEecCCCCCcCCCCCCCceEEEEEeee---cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCC
Q 008496 241 IWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP 317 (563)
Q Consensus 241 iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~ 317 (563)
+|++....... .....++|.. +...+..++||+|+|+.+|.+||+|++||.+|+|+.+|.+..++..|++|
T Consensus 205 i~~l~e~~~~~------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgP 278 (524)
T KOG0273|consen 205 IWNLLENSNIG------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGP 278 (524)
T ss_pred eeeehhhcccc------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCc
Confidence 99987421110 1122344433 34445678999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCC
Q 008496 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h 397 (563)
|++|+|+..|+||++++.|+++.+||..++++.++|.+|..+.++++|.++..|++++.|+.|++|.++...|+.+|.||
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd 477 (563)
.++|+++.|+|.|.+|+|||+|++++||++.....++.|++|.+.|+++.|+|.+....+|+....+++++.|++|++||
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 557 (563)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~ 557 (563)
+..+.+++++..|..||++++|||+|+|+|+|+.||.|+||+.+++++++.+.++++|++|+|+.+|++|++|++++.++
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q 008496 558 VLDFRM 563 (563)
Q Consensus 558 v~~~~~ 563 (563)
|+|||+
T Consensus 519 vldlr~ 524 (524)
T KOG0273|consen 519 VLDLRK 524 (524)
T ss_pred EEEecC
Confidence 999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-56 Score=408.36 Aligned_cols=325 Identities=31% Similarity=0.538 Sum_probs=295.3
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..+.||...|.|++|+|+|..||||++|.++|+||+.+.+. +..++ .|...|.|++|+|||+.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~K----gH~~WVlcvawsPDgk~ 171 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCK----GHKNWVLCVAWSPDGKK 171 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------ceeec----CCccEEEEEEECCCcch
Confidence 35789999999999999999999999999999999976442 12222 35678999999999999
Q ss_pred EEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCC-----CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 289 LATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
||+|+.||.|++||.. +.....+.+|+..|++|+|.| ...+|++++.||+|+|||+..+.++..+..|..++.
T Consensus 172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 9999999999999954 455668999999999999976 457899999999999999999999999999999999
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-----------CCCC-------------------
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS------------------- 411 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-----------~~~~------------------- 411 (563)
++.|-.+..+.+++.|++|++|+...++.++.++||...|+.++.+ |.++
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876 3343
Q ss_pred ------EEEEEeCCCcEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496 412 ------LLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 484 (563)
Q Consensus 412 ------~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 484 (563)
.+++||+|+++.+|+... .+++..+.+|...|..+.|+|++. ++||+|+|.+||+||-++|+.+
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcchh
Confidence 399999999999999754 457888999999999999999986 8999999999999999999999
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 485 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 485 ~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
.+++||-.+|+.++||.|.++|++||.|.+++||++++.++...+.++ ..|+.+.|+|||.++|.|..|+.+.+|
T Consensus 403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999999999999999999999999999999999999998888864 569999999999999999999988887
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-49 Score=357.90 Aligned_cols=287 Identities=32% Similarity=0.581 Sum_probs=254.5
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-- 284 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-- 284 (563)
+..+.++|...|.|++|+|||+.||||+.||+|++||..++...+.+ ..+|.+.|++++|.|
T Consensus 149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~----------------l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA----------------LRGHKKWITALAWEPLH 212 (480)
T ss_pred cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc----------------ccCcccceeEEeecccc
Confidence 45788999999999999999999999999999999998876543321 234678999999976
Q ss_pred ---CCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 285 ---EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 285 ---~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
..++|++++.||.++|||+.. .....+.+|+.+|+|++|--+| ++++||.|++|++|+...|.+.+.+..|..-+
T Consensus 213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence 578999999999999999874 5677899999999999998665 89999999999999998888877777776544
Q ss_pred EEEecC-------------C------------------------CceEEEEeCCCeEEEEEcCC-CcceeeecCCCccee
Q 008496 361 LDVDWR-------------N------------------------NVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVN 402 (563)
Q Consensus 361 ~~~~~~-------------~------------------------~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i~ 402 (563)
..++.. . ...+++++.|+++++|+-.. .+|+..+.||...|+
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 433322 1 12589999999999998765 458999999999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 482 (563)
.+.|+||++++|++|.|..|++|+.++++.+.+|++|-..||.++|+.+.+ +|+|||.|.++++|++++.+
T Consensus 372 ~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 372 HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999999999999999999999999999999875 89999999999999999999
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
+...+.||...|+++.|+|||..+++|+.|+.+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-46 Score=342.57 Aligned_cols=282 Identities=28% Similarity=0.478 Sum_probs=258.5
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC--CCEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLA 290 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~l~ 290 (563)
|-+.+|..|.||+++..|||||-+|.+++|..++.. .+..+. +|...|.++.|+|. +..++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l~----gH~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTLR----GHTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEEe----ccccceeeEEEccCCCcccee
Confidence 566889999999999999999999999999976532 112233 35678999999996 67899
Q ss_pred EEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 291 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 291 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
||+.||++++|+.++ .....+.+|...|..++|+|+|++|+|++.|.+.++||++++......++|...+.++.|..+.
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 999999999999987 6777899999999999999999999999999999999999998888889999999999998776
Q ss_pred eE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496 370 SF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (563)
Q Consensus 370 ~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 448 (563)
.+ ++++.|..-++||+++++.+..+.||..+|.+|+|+|+|-.|||||.|++++|||++..+.+..+.+|...|+.++|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 55 67788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
+|... .+|+|+|.|++++||..++..++.++.||.+.|.++.++|||.+|+|++.|+++++|.
T Consensus 396 ~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99432 4899999999999999999999999999999999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-45 Score=335.56 Aligned_cols=278 Identities=25% Similarity=0.431 Sum_probs=262.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCcee
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
..+|..+.||.++..|+||+.+|.++||+.. ....++|.+|++.|.++.|+|. +..++||+.||++++|++.+...+
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 5789999999999999999999999999965 5778899999999999999997 568999999999999999999999
Q ss_pred EEeeecccCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
+.+..|...+..+.|.++.. +++++-|.+-++||+.+...+....||...|.+++|+|||.+++||+.|..-||||+++
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt 334 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT 334 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence 99999999999999987655 57889999999999999988888899999999999999999999999999999999999
Q ss_pred CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC-CCCEEEE
Q 008496 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLAS 508 (563)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-dg~~las 508 (563)
++++..+.+|.++|+++.|+|+|. .|||||.|++++|||++..+.++.+.+|..-|+.|.|+| .|++|+|
T Consensus 335 gr~im~L~gH~k~I~~V~fsPNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 335 GRCIMFLAGHIKEILSVAFSPNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred CcEEEEecccccceeeEeECCCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 999999999999999999999984 799999999999999999999999999999999999999 6899999
Q ss_pred EeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 509 GSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+|.|++++||...++.+++++.++. .|.++..++||..+++++-|.++.+|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999998864 699999999999999999999999984
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=306.74 Aligned_cols=285 Identities=26% Similarity=0.467 Sum_probs=255.8
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
.++|+||.+.|.++.|++|.++++++|.||.+.|||..+... .+.. .-.+..|-+++|+|.|+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--------~hai---------pl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--------VHAI---------PLPSSWVMTCAYSPSGN 110 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--------eeEE---------ecCceeEEEEEECCCCC
Confidence 378999999999999999999999999999999999765321 0111 12356799999999999
Q ss_pred EEEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 288 LLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
++|+|+.|+...||++.. .....+.+|++-+.++.|-+ ..+|+|+|.|.++.+||+++++....|..|.+.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 999999999999999752 24457899999999999988 5579999999999999999999999999999999
Q ss_pred EEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 361 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 361 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
+.++..+ ...|++++-|++.++||++.+..+++|.||...|++++|.|+|.-|+|||+|+++|+||++.++.+..+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9988765 57899999999999999999999999999999999999999999999999999999999999887766542
Q ss_pred --cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 439 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 439 --~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
-..+|++++|+..|+ +|.+|..|.++.+||.-.++.+..+.+|...|.++..+|||..++|||.|.+++
T Consensus 270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 345789999999886 788899999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 008496 517 IWS 519 (563)
Q Consensus 517 iw~ 519 (563)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-41 Score=298.22 Aligned_cols=291 Identities=27% Similarity=0.472 Sum_probs=246.8
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
-+|++|++.|..++-.+. ...|++++.|.++.+|++...... .+ ...+.+ .+|+..|..+..++||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----~G----~~~r~~----~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----YG----VPVRRL----TGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----cC----ceeeee----eccceEecceEEccCCc
Confidence 478999999999999997 579999999999999998753111 00 112222 33567799999999999
Q ss_pred EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+.++++.|+.+|+||+.+ +....|.+|+..|.+++|+++...+++|+.|+++++||........
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--------------- 141 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--------------- 141 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE---------------
Confidence 999999999999999875 6777899999999999999999999999999999999975432100
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
+ .-.+|.+.|+|+.|+|+ ..+|+++|.|+++++||+++.+..+.+.+|++.++
T Consensus 142 ------------------~-------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 142 ------------------I-------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred ------------------E-------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 0 00123678999999998 78999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
.+.++|+|. +.++|+.||.+.+||++.+++++.+. |..+|.+++|+|+..+|+.+...+ |+|||+.++.
T Consensus 197 t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~ 265 (315)
T KOG0279|consen 197 TVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA 265 (315)
T ss_pred EEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence 999999997 78999999999999999999998887 678999999999999998776554 9999999998
Q ss_pred eEEEEecC---------C-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 525 IVKTYTGN---------G-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 ~~~~~~~~---------~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++..+... . ...+++|++||..|.+|+.++.|+||-++
T Consensus 266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 87776421 1 23589999999999999999999999875
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-39 Score=307.49 Aligned_cols=354 Identities=24% Similarity=0.423 Sum_probs=275.2
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC----CCCCC-------------------------
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG----AQNGP------------------------- 257 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~----~~~~~------------------------- 257 (563)
.+..+.+|...++...|||.|.++|+|...|.+|||+.......-. ...++
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 3556789999999999999999999999999999999654111000 00000
Q ss_pred -------------------ceEEEE------------------------EeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 258 -------------------LNVLVL------------------------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 258 -------------------~~~~~~------------------------~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
++...+ .+++.....|++-|.|+.|+|||.++++++.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence 000000 0122233467788999999999999999999
Q ss_pred CCeEEEEE-cCCceeEeec---cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc---CeEEEecCC
Q 008496 295 DGQARIWS-TNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRN 367 (563)
Q Consensus 295 dg~i~vw~-~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 367 (563)
||.+.+|| ..|.....+. +|++.|++|.|+||+++|+|++.|++++|||+.+.++++++.+... ..+.+-|.
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq- 289 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ- 289 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-
Confidence 99999999 4577777776 8999999999999999999999999999999999999998876543 34566788
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee-----------eee
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDL 436 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~-----------~~~ 436 (563)
+..+++.+.+|+|..++.....+.+++.||...|+++..+|++++|.+|+.||.|.-|+..++..- ..+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM 369 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence 677888999999999999988899999999999999999999999999999999999998655322 222
Q ss_pred cccC-CCEEEEEEcc-------------------------------CCC------------------------------C
Q 008496 437 REHS-KEIYTIRWSP-------------------------------TGS------------------------------G 454 (563)
Q Consensus 437 ~~~~-~~i~~~~~~p-------------------------------~~~------------------------------~ 454 (563)
..+. +.+.++.|.. ++. .
T Consensus 370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 2222 2333332221 100 0
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EEEe-
Q 008496 455 TNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT- 530 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~~~- 530 (563)
..+|++ ..++.|+.||.|+||.+..+.. ...+..|..+|++++||||+.|||+|...+.|.+||+.+++.. ..+.
T Consensus 450 Av~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 450 AVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 001222 2578899999999999886553 2345679999999999999999999999999999999987752 2232
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 531 GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+...|.+++|+|+.+++|+|+-|-.|.||+++
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 45679999999999999999999999999986
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=287.71 Aligned_cols=279 Identities=20% Similarity=0.376 Sum_probs=254.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---- 347 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---- 347 (563)
|...|.++.|++|.++|++++.||.+.|||.- ......++--..-|..++|+|.|+++++|+.|+.+.||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 45679999999999999999999999999964 3444455556678999999999999999999999999999865
Q ss_pred --ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEE
Q 008496 348 --EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI 424 (563)
Q Consensus 348 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~i 424 (563)
...+.+..|.+-+.+..+.++..+++++.|.+..+||+.+++.+..|.||.+.|.+++++| +++.++||+-|+..+|
T Consensus 134 ~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 3456688899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCC
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 502 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spd 502 (563)
||++.+.+++.|.+|...|.+++|.|+|. -+++||.|++.|+||++..+.+..+.. -..+|++++||..
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 99999999999999999999999999986 589999999999999999888776652 3458999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 503 GEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 503 g~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|++|.+|..|..+.+||.-.++.+..+.++ ..|.+|.-+|||.-|++|+.|.+++||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999988888775 4699999999999999999999999984
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-40 Score=299.11 Aligned_cols=297 Identities=31% Similarity=0.507 Sum_probs=261.4
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.||..+|+.+-|+|+-.++|+++.|++|++||..++.... .++ +|.+.|..++|+..|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------~Lr----GHt~sv~di~~~a~Gk 163 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------SLR----GHTDSVFDISFDASGK 163 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh-------------hhh----ccccceeEEEEecCcc
Confidence 34577899999999999999999999999999999998876421 122 3445699999999999
Q ss_pred EEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 288 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
+|++++.|=.+.+||.+.. ....+.+|.-.|.+++|-|.|.+++|++.|.+|+.|++.++-+
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c---------------- 227 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC---------------- 227 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----------------
Confidence 9999999999999998753 4446789999999999999999999999999999999988754
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
+.+|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|-+
T Consensus 228 -------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 228 -------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred -------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 3456778888999999999999999999999999999999888899999999999
Q ss_pred EEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 446 IRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 446 ~~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
++|.|...... +.++..++.++|.|++||+||+.++.|++++.+|...|..++|+|-|+||+++.+|++++|||
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 99998754221 222345899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 520 LKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 520 ~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++++++++++..+. -+.++.|+.+-.++++|+-+-++.||..|
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 99999999987654 47899999999999999999999999765
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=289.60 Aligned_cols=333 Identities=23% Similarity=0.381 Sum_probs=284.4
Q ss_pred CCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 205 ~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
+..+.++.+|+.+|++|+.+|+.+++||||.|..+.||++.++... ....+|...|+++.||.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH 116 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc
Confidence 4456789999999999999999999999999999999999876421 12235678899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
+|.+||||+.+|.|+||... +.....+...-..|.=++|||.+..|++|+.||.+.+|.+..+...+.+..|..+..+-
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 99999999999999999976 45556666566678889999999999999999999999999988888899999888887
Q ss_pred ecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec----
Q 008496 364 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---- 437 (563)
Q Consensus 364 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~---- 437 (563)
.+.+ ..+++++..|++|++|+..++.|+..+.+.. .+..++.++..+..+.+|+.++.+.+-+..+++.+....
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 7754 4678899999999999999999988877543 357889999999999999999999999988888877666
Q ss_pred ----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 438 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 438 ----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
.+...+.++.+.|.... -.+.|+|+.||+|.|||+...+..+.+. |..+|..+.|-+ ..+|++++.+|
T Consensus 277 ~l~~~~e~~~esve~~~~ss~------lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSK------LPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred cccccchhhhhhhhhcccccc------cchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCc
Confidence 34455666666664432 1278999999999999998777665554 889999999998 78999999999
Q ss_pred cEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 514 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 514 ~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.|+.||.++|.++.+|.++ .+|++++.+|+++++++++.|++..||++.
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999986 479999999999999999999999999864
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-40 Score=327.61 Aligned_cols=305 Identities=27% Similarity=0.490 Sum_probs=255.1
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.++..-...++|+.|++++++||.|-.|..|++|.+...+. +.++ ..+| ...
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk-----------~~~~---l~~ 423 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLK-----------DASD---LSN 423 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------cccc-----------chhh---hcc
Confidence 33333345689999999999999999999999999864321 1111 0011 111
Q ss_pred EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+-+++.|-.+.+-|.+. ....++.+|.+||+++.|+|+.++|++||.|+++|+|.+.+..+.-.+..|..|+.++.+.+
T Consensus 424 ~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 424 IDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 22334444455555443 34456899999999999999999999999999999999999999999999999999999865
Q ss_pred -CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 368 -NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 -~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
...||+++.|++.++|......|.+.|.||.+.|.|++|+|++.++||||.|.++|+||..++..++.|.+|.++|.++
T Consensus 504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-- 524 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-- 524 (563)
+|+|.|. +|++|+.||.|+|||+.+++.+..+.+|.+.|+++.||.||..||+||.|++|++||+..-.
T Consensus 584 ~~Sp~Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 584 AFSPCGR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEcCCCc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999986 89999999999999999999999999999999999999999999999999999999986421
Q ss_pred ----------------------eEEEEec-CCCEEEEEEcCCCCEEEEE
Q 008496 525 ----------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 525 ----------------------~~~~~~~-~~~i~~l~w~~~g~~la~~ 550 (563)
++.+|.. +..|..|.|......|++|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 2333322 3457788887777555555
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-38 Score=308.93 Aligned_cols=331 Identities=24% Similarity=0.423 Sum_probs=278.9
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
..++.||...|.++.|+.|.++|++||.|.++|||.+...+.. .. .....|...|-..-|..+..
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------~~----~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------FT----YALNGHKDYVVACFFGANSL 202 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------ce----EeccCCCcceEEEEeccCcc
Confidence 3577899999999999999999999999999999998643210 01 11245677899999999999
Q ss_pred EEEEEeCCCeEEEEEcC------------------------Cce-----------eEeeccCCCCEEEEEeCCCCCEEEE
Q 008496 288 LLATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYLLT 332 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s 332 (563)
.+.+-+.||.+.+|..+ +.. +.-+......|++.+||+..+.|++
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 99999999999999754 111 1122333478999999999999999
Q ss_pred eeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC
Q 008496 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 410 (563)
Q Consensus 333 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 410 (563)
|-..|...+|.+....+++.+.....++..+.|. .+...+.|+.=|.+.||+.....-+....||...++|++++|||
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence 9999999999999999999998888888888886 33333444555789999999888888889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-----------
Q 008496 411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----------- 479 (563)
Q Consensus 411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----------- 479 (563)
+++|||++||.|+|||..++-|..+|..|+..++.++|+..+. .|+++|.||+||.||+.
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecCC
Confidence 9999999999999999999999999999999999999998875 57777777777777763
Q ss_pred ---------------------------------CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ee
Q 008496 480 ---------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KI 525 (563)
Q Consensus 480 ---------------------------------~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-~~ 525 (563)
+|+.+-.+.||.+||.+++|+|+|..||+||.|.+|++||+-.. ..
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 34444456699999999999999999999999999999998543 35
Q ss_pred EEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 526 VKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.++.....+..++|+|||+.||++..||.+.+||.+
T Consensus 514 vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 514 VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 6777777889999999999999999999999999975
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.8e-40 Score=301.23 Aligned_cols=278 Identities=25% Similarity=0.481 Sum_probs=246.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
...|..+.|.|+|+.|++|+..|...+|+...- ....+..|..+|.++.|+++|.+++||+.+|.|++|+..-...+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 456999999999999999999999999986432 2235678999999999999999999999999999999865544443
Q ss_pred eeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 353 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 353 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
...|...+.++.+. ++..|++|+.||+|.+|+....++-..++||.-.|.|++|+|...+||+||.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 44455788888885 67789999999999999999988888899999999999999999999999999999999999999
Q ss_pred eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-CCEEEEEe
Q 008496 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS 510 (563)
Q Consensus 432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~lasgs 510 (563)
++.++..|...|..+.|+|++. +|+++|.|..++++|+++.+.++++++|+..|+++.|+|- ..+|++|+
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999999999999874 8999999999999999988899999999999999999996 46888999
Q ss_pred CCCcEEEEecCCCeeEEEE--ecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 511 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 511 ~dg~v~iw~~~~~~~~~~~--~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
.||.|..|.+...+.+... ...+.|++|+|+|-|-.||+|+.|.++..|.
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999854544433 3456799999999999999999999999884
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-38 Score=308.68 Aligned_cols=337 Identities=29% Similarity=0.519 Sum_probs=272.9
Q ss_pred ceecCCCc-eeEecC-CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe
Q 008496 200 SFEIPNSD-VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (563)
Q Consensus 200 ~~~~~~~~-~~~l~~-h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 277 (563)
.+.+|... +..++. |+++|..++|+|.+.+||+||.|+.+++||+..+. ....+++ +.+.|
T Consensus 88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------~th~fkG----~gGvV 150 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------CTHSFKG----HGGVV 150 (775)
T ss_pred EEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------EEEEecC----CCceE
Confidence 44555433 345566 99999999999999999999999999999997542 2333333 45779
Q ss_pred EEEEECCCCC--EEEEEeCCCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE--
Q 008496 278 TTLDWNGEGT--LLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-- 351 (563)
Q Consensus 278 ~~l~~s~~g~--~l~sg~~dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-- 351 (563)
.++.|+|+-+ +|++|+.|+.+++|+..... ..++..|.+.|+++.|.+++..+++++.|+.+.+||+..-+...
T Consensus 151 ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 151 SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 9999999754 58999999999999987432 45678899999999999999999999999999999974311000
Q ss_pred ---------------------------------Eee--------------------------------------------
Q 008496 352 ---------------------------------QFE-------------------------------------------- 354 (563)
Q Consensus 352 ---------------------------------~~~-------------------------------------------- 354 (563)
.+.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 000
Q ss_pred ----------------------------------------------------ecccCeEEEe-cCCCceEEEEeCCCeEE
Q 008496 355 ----------------------------------------------------FHSGPTLDVD-WRNNVSFATSSTDNMIY 381 (563)
Q Consensus 355 ----------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~d~~i~ 381 (563)
.|...+++++ |..+..+++++.|++++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 0000011122 22333478899999999
Q ss_pred EEEcCCC----cceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCce-----e----eeecccCCCEEEEE
Q 008496 382 VCKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-----V----HDLREHSKEIYTIR 447 (563)
Q Consensus 382 ~~~~~~~----~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~~~ 447 (563)
+|.+.++ .++....||++.|.+++++..+ .+|+++|.|+++++|++...+. + ...+.|.+.|.+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988443 2566678999999999997654 5789999999999999876221 1 13457999999999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
.+|+.. ++||||.|.+.+||+++....+.++.||+..|+++.|+|..+.|||+|.|++|+||.+.+..+++
T Consensus 471 ia~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 471 IAPNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred ecCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 999865 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 528 TYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 528 ~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++.++ ..|.-.+|-.+|+.|++|.+||-+.|||++
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99975 468999999999999999999999999986
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-37 Score=268.93 Aligned_cols=289 Identities=27% Similarity=0.509 Sum_probs=235.5
Q ss_pred eeEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
+..+.+|++.|-.++|||- |.+|||+|.|..||||+...+. ....++.. ...|.+.|.+++|+|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vl--d~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----------SWTCKTVL--DDGHKRSVRSVAWSPHG 73 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----------cEEEEEec--cccchheeeeeeecCCC
Confidence 4678899999999999998 8999999999999999976421 12233222 12567889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 287 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
++|++|++|.++.||...+ ....++.+|...|.+++|+++|++|++|+.|++|.||.+..+.-
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------- 139 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------- 139 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence 9999999999999998653 35668899999999999999999999999999999998753321
Q ss_pred ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC---CCceeeeecccC
Q 008496 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS 440 (563)
Q Consensus 364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~---~~~~~~~~~~~~ 440 (563)
-..+..+.+|...|..+.|+|...+|+|||.|.+|++|+-. ...++.++.+|.
T Consensus 140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 11234678899999999999999999999999999999865 345788999999
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
..+.++.|.|.|. .|++++.|++|+||-....- -..|+.+++.++|. ...||+|+.|+.|++|.-
T Consensus 196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999885 68999999999999754211 12377899999998 458999999999999986
Q ss_pred CCCe------eEE--EEecCCCEEEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496 521 KEGK------IVK--TYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 521 ~~~~------~~~--~~~~~~~i~~l~w~~~-g~~la~~~~~~~v~v~~~~ 562 (563)
...- ++. ...+...|+++.|+|. .++|++|+.||.|.+|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6421 111 1112346899999995 6899999999999999874
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=297.81 Aligned_cols=327 Identities=24% Similarity=0.451 Sum_probs=276.2
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..|......|+|++|||...+||+|-..|...+|.+++-.. +..+. .....|.+++|+..|.+
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-------------ih~LS----is~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-------------IHSLS----ISDQKILTVSFNSTGDW 321 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-------------EEEee----cccceeeEEEecccCCE
Confidence 34444447799999999999999999999999999875321 11111 12356999999999999
Q ss_pred EEEEeCC-CeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 289 LATGSYD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 289 l~sg~~d-g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
||.|+.. |++-||+.... .+...++|-..+++++++|||+++++|+.||.|+|||...+-|..+|.-|...+..+.|.
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 9998765 89999997643 445678999999999999999999999999999999999999999999999999999996
Q ss_pred C-CceEEEEeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccCCCE
Q 008496 367 N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEI 443 (563)
Q Consensus 367 ~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i 443 (563)
. +..+++++.||+|+.||+..-+..++|..... ...|++.+|.|.++..|+.|. .|.+|++.+++.+..+.+|.++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 4 55678889999999999998888888875433 478999999999998888875 69999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
.+++|+|.+. .|+|+|.|.+||+||+-... .+-++. +...+++++|+|||+-||+++.||.|.+||.+.
T Consensus 482 s~l~f~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 482 SGLSFSPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeEEccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 9999999986 79999999999999986543 333443 566799999999999999999999999999988
Q ss_pred CeeEEEEec---------------------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 523 GKIVKTYTG---------------------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 523 ~~~~~~~~~---------------------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+..+.++.+ ....+.+++++||+.|.+|+....||+|+++
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 766544432 1346789999999999999899999999986
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-37 Score=265.50 Aligned_cols=278 Identities=26% Similarity=0.470 Sum_probs=238.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--
Q 008496 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-- 305 (563)
Q Consensus 228 ~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-- 305 (563)
-+|||+|.|.+||+|...+|.+... +.+ ....|..|...|++++||.|+. -.||+||++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT----------iqh-------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT----------IQH-------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE----------Eec-------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence 4799999999999999888764321 111 2467999999999999998875 6899999863
Q ss_pred -ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeCCCeEEEE
Q 008496 306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVC 383 (563)
Q Consensus 306 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~ 383 (563)
..+.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|... .++.++...+ ...++++..+|.|++|
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEE
Confidence 367899999999999999999999999999999999999997777766654 7888877754 5678999999999999
Q ss_pred EcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeecccCCCEEEEEEccCCCCCC
Q 008496 384 KIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 384 ~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~~ 456 (563)
|++.......+. .....|.++...|||++++.+.+-|...+|++-+. .+++.+++|.+-+..+.++|++.
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--- 228 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--- 228 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence 999876544433 33457999999999999999999999999998653 35677889999999999999986
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC
Q 008496 457 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 533 (563)
Q Consensus 457 ~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~ 533 (563)
+||++|.|.+++||++++. +.-..+.+|...+...+||.||.||+||+.|+.+++|++..++.++.|.++-
T Consensus 229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8999999999999999987 5566789999999999999999999999999999999999999999998753
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.9e-39 Score=293.90 Aligned_cols=282 Identities=26% Similarity=0.480 Sum_probs=250.8
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
...|+.+.|.|+|+.|++|+..|...+|+...- .+......|..+|.++.|+++|.++++|..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 467999999999999999999999999985321 111223456789999999999999999999
Q ss_pred CCeEEEEEcCCceeEeeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEE
Q 008496 295 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA 372 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 372 (563)
+|.|++|+.+-..+..+..|. ..|.+++|+|+...|++||.||+|+|||....+....+..|.-.+.+++|.+.. .++
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 999999998876666666665 899999999999999999999999999998887777889999999999998765 567
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 452 (563)
+++.|+.|.+||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|..
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 88999999999999999999999999999999999999999999999999999999888889999999999999999976
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 453 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
. .+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|..||+|+.|.++++|...
T Consensus 319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4 38999999999999999855555544 4699999999999999999999999999999753
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=281.42 Aligned_cols=290 Identities=26% Similarity=0.469 Sum_probs=252.2
Q ss_pred ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (563)
Q Consensus 202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 281 (563)
..|.....++.||.+.|.|+++.|...+|+||+.|++++|||+.+++... ...++-..|..++
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~va 200 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVA 200 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeee
Confidence 34445557889999999999999999999999999999999998865211 1123446689999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
+|+...|+++++.|+.|+.||+.. +.+....+|-+.|++|+.+|.-..|++|+.|.+++|||+++..
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------ 268 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------ 268 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------
Confidence 999999999999999999999864 5566788999999999999999999999999999999998753
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 440 (563)
.+..+.||...|..+.+.|....++|||.|++|++||++.++...++..|.
T Consensus 269 -----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 269 -----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred -----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence 345678999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
..+.+++.+|... .+||+|.| .|+-|++..|..+..+.+|...|++++...|| ++++|+..|.+.+||.
T Consensus 320 ksvral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 320 KSVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred ceeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 9999999998653 67888776 69999999999999999999999999998886 6778999999999999
Q ss_pred CCCeeEEEE---------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 521 KEGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 521 ~~~~~~~~~---------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++|...+.. ....+|+..||+..|.+|++|..|++|.+|.
T Consensus 389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 988543322 3356799999999999999999999999984
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-37 Score=300.76 Aligned_cols=344 Identities=22% Similarity=0.340 Sum_probs=283.9
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC--------------------------CC-C-----
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG--------------------------AQ-N----- 255 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~--------------------------~~-~----- 255 (563)
..++.+|.+.|++++|++++..++++|.|..+.|||+...+.... +. .
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 457789999999999999999999999999999999743211000 00 0
Q ss_pred -------------CC----c-eE-----------------EEEE-----eeecccccCCCCeEEEEE-CCCCCEEEEEeC
Q 008496 256 -------------GP----L-NV-----------------LVLK-----HVKGRTNEKSKDVTTLDW-NGEGTLLATGSY 294 (563)
Q Consensus 256 -------------~~----~-~~-----------------~~~~-----~~~~~~~~~~~~V~~l~~-s~~g~~l~sg~~ 294 (563)
.+ + .. +.+. .......+.+..|..|+| .|+.++|++++.
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 00 0 00 0000 001122234566788775 567899999999
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEeeecccCeEEEecC--CC
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--NN 368 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~~ 368 (563)
.+.+|+++..+.....+.+|+..|.++.-..+|.+|+|||.|+++++|.++.+ .+......|...+..+... ..
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 99999999888777789999999999996667789999999999999977433 2445566788777777663 34
Q ss_pred ceEEEEeCCCeEEEEEcCCCcc-----ee----eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 369 VSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
..|+++|.|.++.+|++...++ +. +...|...|+|++++|+.++|||||.|.+.+||++........+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 5789999999999999976321 11 23579999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
...+.++.|+|... +|||+|.|++|+||.+.+..|+.++.||+..|..+.|-.+|+.|++|+.||.|++|+
T Consensus 505 ~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999764 799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 520 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 520 ~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++++.++++++.+ ..|++++-++.++++++|++||.+.+|.
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999764 5799999999999999999999999983
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=266.72 Aligned_cols=278 Identities=24% Similarity=0.433 Sum_probs=245.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 348 (563)
..+.+.|.++.|+|+|.+|+||+.|..|.+|++.+.. ...+.+|.++|..+.|.++++.+++++.|++++.||+++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 3456789999999999999999999999999987754 34788999999999999999999999999999999999999
Q ss_pred eeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 349 WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
....+..|..-+..++.. +...+.+++.|+++++||++...+++++. ..-.++++.|..++..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999999998887777643 33456778899999999999988888775 345789999999999999999999999999
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEecCCCC----CEEEEE
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSLA 498 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~----~i~~l~ 498 (563)
++.....+.+.+|..+|+.+..+|.|. ++.+-++|.++++||++- .+++..+.+|.. .....+
T Consensus 203 ~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 203 LRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred cccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999999999999999999986 688999999999999873 456777766532 346679
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
|||+++++.+|+.|+.+++||.....++-.++++ +.|..+.|+|.-..|..|++|+++.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999999887887777775 56899999999999999999998865
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=266.88 Aligned_cols=246 Identities=29% Similarity=0.506 Sum_probs=209.7
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
.++.|.||...|..|+.+++|++.++|+.|+++|+||+.+++. ...+. +|.+.|++++|++|.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f~----GH~~dVlsva~s~dn 117 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRFV----GHTKDVLSVAFSTDN 117 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEEE----ecCCceEEEEecCCC
Confidence 3567899999999999999999999999999999999987642 12232 356889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEeeccC--CCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 287 TLLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
+.+++|+.|.+|++|++-|..+.++..+ ++-|.+++|+|+ ..+|++++.|++|++||+++.+..
T Consensus 118 ~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~------------ 185 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR------------ 185 (315)
T ss_pred ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh------------
Confidence 9999999999999999999888877665 788999999998 688999999999999999875432
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
..+.||++.++.++++|||.++++|+.||.+.+||++.++.+..+ .|...
T Consensus 186 -----------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 186 -----------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -----------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 346789999999999999999999999999999999999987765 57789
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---------CCCEEEEEEcCCCCEEEEEeCCC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------REPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---------~~~i~~l~~spdg~~lasgs~dg 513 (563)
|.+++|+|+- +.| .+..+..|+|||++++.++.+++.. .....+++||+||..|.+|-.|+
T Consensus 236 v~sl~fspnr---------ywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 236 VNSLCFSPNR---------YWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EeeEEecCCc---------eeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 9999999974 244 4445667999999999888766421 12256789999999999999999
Q ss_pred cEEEEecC
Q 008496 514 SMHIWSLK 521 (563)
Q Consensus 514 ~v~iw~~~ 521 (563)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-35 Score=277.12 Aligned_cols=352 Identities=23% Similarity=0.356 Sum_probs=265.3
Q ss_pred CCcccccccCCccc---eecCC-CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEE
Q 008496 187 PEPMDIATTSASES---FEIPN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (563)
Q Consensus 187 ~~~~~~~~~~~~~~---~~~~~-~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~ 262 (563)
..|+.+.+.+.... |+=|+ .....++.|..=|+|+.|||||+++||+|.||++.|||=.++...
T Consensus 158 sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v------------ 225 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV------------ 225 (603)
T ss_pred CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE------------
Confidence 34555555443322 22233 234567889999999999999999999999999999986554321
Q ss_pred EEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------------------------------------
Q 008496 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------------------------------ 306 (563)
Q Consensus 263 ~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------------------------------ 306 (563)
..+. ....|.+.|.+++|+||++.++|++.|.+++|||....
T Consensus 226 -g~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 226 -GELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred -EEec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 1111 13456788999999999999999999999999985321
Q ss_pred --------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-eecccCeEEEecCCCceEEEEeCC
Q 008496 307 --------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSSTD 377 (563)
Q Consensus 307 --------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 377 (563)
....+.+|..+|++|..+|++++|++|+.||.|.-||..++..-+.. ..|...+..+.-.....+.+++.|
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 01234579999999999999999999999999999999877644332 456666666666665667777777
Q ss_pred CeEEEEEcCCC------------cc-------------------eeeecCCC--------cceeEEEECCCCCEEEEEeC
Q 008496 378 NMIYVCKIGEN------------RP-------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCSD 418 (563)
Q Consensus 378 ~~i~~~~~~~~------------~~-------------------~~~~~~h~--------~~i~~~~~~~~~~~las~s~ 418 (563)
.++++.++..+ +| +..++.+. -...+++++|+++.+|.|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 77777755321 11 11122222 13568999999999999999
Q ss_pred CCcEEEEeCCCCcee--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EecCCCCCEE
Q 008496 419 DVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVY 495 (563)
Q Consensus 419 dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~ 495 (563)
|+.++||.+..+... ..+..|.++|+.++|+|++. +||+|...+.|.+||+.+.+... .+.-|...|.
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 999999999876543 24567999999999999986 89999999999999999877633 3344899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+++|||+..++||||.|..|.||++.+-. .+..- .+..+|+.|.|-.+. .|++++.|..|.+|++-
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence 99999999999999999999999997532 22211 234569999997654 56666689999999974
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-37 Score=307.57 Aligned_cols=270 Identities=28% Similarity=0.492 Sum_probs=239.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
...|+|..|++|+.+||.|-.|..|++|.........+.. ..+ ...+=+.+.|-.+.+-|.........+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-------~~~---l~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-------ASD---LSNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-------hhh---hccccccccchhhhhccccCCceeEEe
Confidence 4679999999999999999999999999987543222221 111 112334556666778888877777889
Q ss_pred eecccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 354 EFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
..|.+||+...+.++..| ++|+.|+++++|.+.+...+..++||..+|..+.|+|.|-+|||||.|++.++|......+
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 999999999999877655 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
.+.+.+|...+.|+.|+|+.. ++++||.|.+||+||+.+|..+..+.||.++|.+++|||+|++||+|+.|
T Consensus 528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 999999999999999999875 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 513 KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|.|+|||+.+|+++..+.++ +.|++|+|+.||..||+|+.|.+|.+||+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99999999999999888765 458999999999999999999999999985
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.7e-36 Score=278.97 Aligned_cols=277 Identities=29% Similarity=0.594 Sum_probs=249.3
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
..|++++||.+|..||||+.||.+|||+...... .....|.++|.++.|+..|++|++++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 5799999999999999999999999999754321 1123457899999999999999999999
Q ss_pred CeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEE
Q 008496 296 GQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFAT 373 (563)
Q Consensus 296 g~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 373 (563)
|++.|||. .|.....+..|..+-..+.|-.+ ..|++++.|+.|+|+-+.....+.++..|.+++..+.|.+. ..+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 99999996 46677788889998788899754 56899999999999999888889999999999999999764 56789
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC---------EEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---------LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~---------~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
|+.|+++.+|..+....+..+.+|..+|..+.|+|+|. .+++++.|+++++||...+.+++.|..|+.+|+
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 99999999999999999999999999999999999763 689999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
+++|+|+|. ++|+|+.||.|.||++++++.+++..+. +.|+.++|+.+|.+|..+-.|+.+++-|++
T Consensus 457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999986 8999999999999999999999998864 569999999999999999999999998875
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.2e-35 Score=321.28 Aligned_cols=289 Identities=21% Similarity=0.419 Sum_probs=232.7
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL 289 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l 289 (563)
+.+|...|++++|+|++++||||+.|++|+||++............+ .. .. .....|.+++|++ ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~--~~---~~-----~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP--VV---EL-----ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc--eE---Ee-----cccCceeeEEeccCCCCEE
Confidence 34589999999999999999999999999999975421110000000 00 01 1135689999987 57899
Q ss_pred EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
++++.||.|++||.. +.....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--------------- 613 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--------------- 613 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE---------------
Confidence 999999999999976 556677889999999999997 788999999999999999987643322
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYT 445 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~ 445 (563)
+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.+
T Consensus 614 --------------------------~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 614 --------------------------IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666 (793)
T ss_pred --------------------------EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence 1112 357788884 579999999999999999998765 46677899999999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
+.|.+ +. +|++++.|++|+|||++. ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+
T Consensus 667 v~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 667 VRFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99963 32 689999999999999974 357788999999999999999999999999999999999
Q ss_pred cCCCeeEEEEe--------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 520 LKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 520 ~~~~~~~~~~~--------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
......+..+. ....|.+++|+++|+.|++|..+|.|.||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 87665443332 1234889999999999999999999999986
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.1e-35 Score=282.40 Aligned_cols=285 Identities=36% Similarity=0.621 Sum_probs=250.7
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..+++|..+|++++|+|++++|++|+.|+.+++|++.++.. .... ..+...+..+.|++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY 65 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence 35678999999999999999999999999999999875431 0111 123456889999999999
Q ss_pred EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
|++++.+|.+++|+... .....+..|...|.++.|++++.++++++.|+.+.+||+.+++....+..|...+..+.|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999999875 56667888999999999999988888888899999999998888888887888899999987
Q ss_pred CceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 368 NVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 ~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
+..++.++ .++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.+++||++.++.+..+..|...+.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 65555444 49999999999888888899999999999999999999999999999999999988888888899999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.|+|++. ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|++++.||.|++|+
T Consensus 226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999743 677888899999999999999999999999999999999999999999999999996
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=262.17 Aligned_cols=285 Identities=27% Similarity=0.465 Sum_probs=241.9
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
++..+.||+++|+++.|+|+|..|||||.|..|.+|++..... +...+ ..|++.|..+.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---------N~~~l-------kgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---------NFWVL-------KGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---------ceeee-------ccccceeEeeeeccCC
Confidence 3457889999999999999999999999999999999764321 11122 2567889999999999
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+.+++++.|.+++.||.. |+....+.+|.+-|.++.-+.-|.. +.|++.|+++++||+++...++.+.. ..++.++.
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 999999999999999975 6777788999999999885555544 56888999999999998887776532 23567788
Q ss_pred cCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC----Cceeeeeccc
Q 008496 365 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----DKYVHDLREH 439 (563)
Q Consensus 365 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~----~~~~~~~~~~ 439 (563)
|.+. ....+++-|+.|.+|+++.+....++.||...|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 8654 5678899999999999999999999999999999999999999999999999999999874 3445555554
Q ss_pred C----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 440 S----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 440 ~----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
. .....++|+|++. .+.+|+.|..+++||......++.+.||.+.|++++|+|...+|.+++.|++|
T Consensus 262 ~hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred hhhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 3 3346778999886 57889999999999999889999999999999999999999999999999998
Q ss_pred EE
Q 008496 516 HI 517 (563)
Q Consensus 516 ~i 517 (563)
++
T Consensus 333 ~l 334 (338)
T KOG0265|consen 333 YL 334 (338)
T ss_pred Ee
Confidence 76
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.7e-37 Score=286.51 Aligned_cols=296 Identities=26% Similarity=0.451 Sum_probs=251.2
Q ss_pred ccceecCCCceeEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCC
Q 008496 198 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276 (563)
Q Consensus 198 ~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (563)
...+.+|...+.++.||+..|+++.|.| .+.+|++||.|+.|+||++.+... .++ ....|..+
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~------------~lr----tf~gH~k~ 260 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR------------CLR----TFKGHRKP 260 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc------------eeh----hhhcchhh
Confidence 4567789999999999999999999999 799999999999999999875210 122 23346788
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
|..++|+.+|..|+++++|+.+++||++. +....+ .....+++++|+|++ +.|++|+.|+.|+.||++++++++.+.
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 99999999999999999999999999874 444444 234567999999999 889999999999999999999999999
Q ss_pred ecccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 355 FHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 355 ~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
.|.+++.++.|.+ +..|++++.|+++++|+.+...+++... .+.....|+..+|++++++.-+.|+.|.|+.+...-.
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 9999999999864 5789999999999999999887776543 2344677899999999999999999999998653221
Q ss_pred ---eeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEE
Q 008496 433 ---VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYL 506 (563)
Q Consensus 433 ---~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~l 506 (563)
-..+.+|.. --..+.|||+|. +|++|+.||.+.+||.++.+.+..+.+|..++..+.|+|.. ..+
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCccee
Confidence 234556643 345678999997 89999999999999999999999999999999999999975 689
Q ss_pred EEEeCCCcEEEEe
Q 008496 507 ASGSLDKSMHIWS 519 (563)
Q Consensus 507 asgs~dg~v~iw~ 519 (563)
|||+.||.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5e-35 Score=299.25 Aligned_cols=289 Identities=29% Similarity=0.546 Sum_probs=248.0
Q ss_pred eeEecCC-CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h-~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
...+.+| ...|.++.|+|+|+.|++++.|+.+++|+....... .+. ....+...|..++|+|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~-----------~~~----~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSN-----------LLR----ELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccch-----------hhc----cccccccceeeeEECCCC
Confidence 3445444 789999999999999999999999999998543310 001 113456789999999999
Q ss_pred CEEEEEeCCCeEEEEEc-CC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 287 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+++++|+.|++++||+. .. ....++.+|...|++++|+|+|+.+++|+.|++|+|||++++++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---------------
Confidence 99999999999999998 43 56778999999999999999999999999999999999987653
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCC
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE 442 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~ 442 (563)
+..+.+|.+.|++++|++++++|++++.|+.|+|||+.++. ++..+..+...
T Consensus 281 --------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 281 --------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred --------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 34567899999999999999999999999999999999998 56777766555
Q ss_pred --EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC---EEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 443 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 443 --i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---i~~l~~spdg~~lasgs~dg~v~i 517 (563)
+++++|+|++. ++++++.|+.+++||+..+.++....+|... +.+..+++.|.++.+|+.|+.|.+
T Consensus 335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 99999999886 7899999999999999999999999988764 455567889999999999999999
Q ss_pred EecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEE--CCCeEEEEEe
Q 008496 518 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF 561 (563)
Q Consensus 518 w~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~--~~~~v~v~~~ 561 (563)
|++.++..+..+.++ ..+..++|++..+.++++. .|+.+.+|.-
T Consensus 406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999998888888776 6688999999999999987 6788888853
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.3e-34 Score=274.83 Aligned_cols=280 Identities=36% Similarity=0.627 Sum_probs=250.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
.|...|++++|+|++++|++++.||.+++|+... .....+..|..++..+.|+|++++|++++.|+.+++||+.+++..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 3467899999999999999999999999999864 455677889999999999999999999999999999999988778
Q ss_pred EEeeecccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
..+..+...+.++.|..+..+ ++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 888888888999999876544 4555599999999998888888889999999999999999999998899999999998
Q ss_pred CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg 509 (563)
++.+..+..|...+.++.|+|++. .+++++.|+.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 888888888988999999999874 57777889999999999999988888899999999999999999999
Q ss_pred eCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 510 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 510 s~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+.||.|++|++.+++.+..+..+ ..|.+++|+++|+.|++++.|+.+.||+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98999999999998888877653 4689999999999999999999999986
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=274.40 Aligned_cols=268 Identities=28% Similarity=0.521 Sum_probs=233.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
.++.|+|+.+. ...+++|..|.+|+|||.+. .....+.+|+++|.|+.|.. ..+++||+|.+|++||+++++.++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 46789999884 56899999999999999875 45567899999999998854 589999999999999999999999
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
++..|...++.+.+.++ .+++|+.|.++.+|++..... .+.+.||...|+.+.|+ .++++++|.|.+|++|++.
T Consensus 272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 99999999999888654 578999999999999977543 45678999999999995 5699999999999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
+..++.++.+|...|.|+.+.. .++++||.|.+||+||+..|.++..+.||..-|.++.| |.+.|++
T Consensus 349 t~efvRtl~gHkRGIAClQYr~-----------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRD-----------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ceeeehhhhcccccceehhccC-----------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 9999999999999999998743 37899999999999999999999999999999999999 5679999
Q ss_pred EeCCCcEEEEecCCCeeE---------EEE-ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 509 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~---------~~~-~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+.||+|+|||+..+.-. .+. ...+.|+.|.|+ --.+++++.+.+|-||||-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 999999999999876432 222 234579999985 4578888899999999983
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-35 Score=272.00 Aligned_cols=301 Identities=26% Similarity=0.391 Sum_probs=239.0
Q ss_pred ceecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (563)
Q Consensus 200 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 279 (563)
..++|.....+|..|+++|.-+.||++|++||||+.|.++.||.+..... ..+++ ...+|..+|..
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~---tlvgh~~~V~y 274 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKK---TLVGHSQPVSY 274 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeee---eeecccCceEE
Confidence 34677778889999999999999999999999999999999999754221 11111 22346788999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCc-eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 280 LDWNGEGTLLATGSYDGQARIWSTNGD-LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 280 l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
+.||||.++|++|+.+..+++||+... ....+ .+|...+.+++|.|||..+++|+.|+++..||+.... ...++...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr 353 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR 353 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc
Confidence 999999999999999999999998744 33322 2356889999999999999999999999999986543 33333322
Q ss_pred -cCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 358 -GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 358 -~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
..+.++.... +..+++...|..|++++......+.... -..+|++++.|.+++++.+.-.+..+++||+...+.+..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 3366666544 3455666788889988876544433222 345799999999999999999999999999998888888
Q ss_pred ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCc
Q 008496 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKS 514 (563)
Q Consensus 436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~ 514 (563)
+.+|...-+-|.-.-.|. +..+++|||.|+.|+||+..+|+++.++.||...|++++|+|.. .++|+||.||+
T Consensus 433 Y~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred hhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 889987665554333332 22489999999999999999999999999999999999999965 78899999999
Q ss_pred EEEEecCC
Q 008496 515 MHIWSLKE 522 (563)
Q Consensus 515 v~iw~~~~ 522 (563)
|+||....
T Consensus 507 IRIWg~~~ 514 (519)
T KOG0293|consen 507 IRIWGPSD 514 (519)
T ss_pred EEEecCCc
Confidence 99998753
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=263.72 Aligned_cols=286 Identities=22% Similarity=0.382 Sum_probs=232.7
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+.+|++.|+++.||.+|.+||||+.+|.++||+..++.... .+ ......+.-|.|+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~----------~~-------~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW----------KL-------DQEVEDIEWLKWHPRAH 161 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE----------Ee-------ecccCceEEEEeccccc
Confidence 45678999999999999999999999999999999987654211 11 11245688899999999
Q ss_pred EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEec
Q 008496 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW 365 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~ 365 (563)
.|+.|+.||.+.+|.... .....+.+|..++++-.|.|+|++++++..||+|++||+.++.....+.... .....+..
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 999999999999999876 6777899999999999999999999999999999999999997766554211 11122222
Q ss_pred C-CCceEEEEeCCCeEEEEEcCCCcceeeec--------CCCcceeEEE---ECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 366 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVK---WDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 366 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~i~~~~---~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
. ....+..|+.++.+++.....++.+..+. ++...+.|+. |+..-++.|+|+-||+|.|||+...++.
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 2 22345667777778877777776665555 3444555554 4555678899999999999999887765
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
+. -.|...|+.+.|.++. +|++++.||.|++||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus 322 ~~-c~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 322 HI-CEHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ee-ccCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 54 4588889999998832 788999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecC
Q 008496 514 SMHIWSLK 521 (563)
Q Consensus 514 ~v~iw~~~ 521 (563)
+.+||++.
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999874
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-34 Score=275.59 Aligned_cols=281 Identities=26% Similarity=0.388 Sum_probs=246.4
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
.+..|+..|-++.|||...+++++=..|.+.||+..+...... + ....-+|.+..|-+.-+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks-------------f----eV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS-------------F----EVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee-------------e----eecccchhhheeeeccceE
Confidence 4556889999999999999999999999999999887543211 1 1123568888888888999
Q ss_pred EEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecC-
Q 008496 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWR- 366 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~- 366 (563)
++|+.|..||||+.+ +..+..|..|..-|.+++.||.-.+++|+|.|.+|++||...+ .+.++|+.|.--++++.+.
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence 999999999999986 4677889999999999999999999999999999999998653 5678899999888888775
Q ss_pred -CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCE
Q 008496 367 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (563)
Q Consensus 367 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i 443 (563)
+...|++++.|++|.+|.+++..|..++.||...|+|+++-+- ..+|+||++|.+|+|||..+..|+.++.+|...|
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 5678999999999999999999999999999999999999764 4799999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
..+.|.|.-+ +++|||.||++|||+..+-++..++.-....|+||+-.+.+..++.|...|.|.
T Consensus 231 s~v~fhp~lp---------iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 231 SFVFFHPELP---------IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred eEEEecCCCc---------EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999764 899999999999999988777777776677899999999988899988887664
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-34 Score=242.90 Aligned_cols=242 Identities=24% Similarity=0.459 Sum_probs=219.5
Q ss_pred eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEc
Q 008496 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKI 385 (563)
Q Consensus 307 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~ 385 (563)
....+.+|+++|..++|+-+|+|.++|+.|++|++|++..+.+++++..|...++++... ++..|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 345678999999999999999999999999999999999999999999999999998764 6678999999999999999
Q ss_pred CCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 386 ~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
.+++.++.|+||.+.|+.++|+.+...+++||.|.++++||.++. ++++.+......|.++..... .
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------e 157 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------E 157 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------E
Confidence 999999999999999999999999999999999999999998754 567777777788888877542 5
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE---EEEEE
Q 008496 464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI---FEVCW 540 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i---~~l~w 540 (563)
+++||.||++|.||++.|+......+| ||++++||+||+....++.|++|++.|-.+|++++.|.++... .+.++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 889999999999999999987666655 8999999999999999999999999999999999999886432 47889
Q ss_pred cCCCCEEEEEECCCeEEEEEe
Q 008496 541 NKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 541 ~~~g~~la~~~~~~~v~v~~~ 561 (563)
+....+++.|+.||.|.+||+
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeEEeccCCceEEEEEe
Confidence 999999999999999999997
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=271.60 Aligned_cols=279 Identities=27% Similarity=0.390 Sum_probs=252.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
++..|.+++++|...+++++-++|.+.||+.+.+ ....+.-..-||.+.+|-+.-+++++|+.|..|+||+.++++.+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 4677999999999999999999999999998754 556677778899999999999999999999999999999999999
Q ss_pred EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCC
Q 008496 352 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~ 428 (563)
+|+.|..-+.++.-++. -.+++++.|.+|.+|+.... .+.++|.||...|.+++|+| |.+.+||||-|++|+||.+.
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence 99999999988887665 45678889999999998765 56789999999999999999 46789999999999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
+..+..++.+|...|.++.|-+.|. +.+|+||+.|.+|+|||..+..|+.++.||...|..+.|+|.-..++|
T Consensus 172 s~~~nfTl~gHekGVN~Vdyy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 172 SPHPNFTLEGHEKGVNCVDYYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred CCCCceeeeccccCcceEEeccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 9999999999999999999998764 348999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 509 GSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
||.||+|+||+..+.++.+++. +-+.+++++-.+.+.++|+|+.+|.+.|
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999988877764 3467899999999999999999987754
No 39
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=263.87 Aligned_cols=304 Identities=24% Similarity=0.331 Sum_probs=238.5
Q ss_pred ceecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE
Q 008496 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (563)
Q Consensus 200 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 279 (563)
...||...-..|.+|+..|.++++.|.|..|+|||.|.+|++||+..... .+++++.........|.+
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda------------s~~~fr~l~P~E~h~i~s 219 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA------------SMRSFRQLQPCETHQINS 219 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc------------cchhhhccCcccccccce
Confidence 45688888899999999999999999999999999999999999975321 112222222334567999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCceeEee-------------ccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008496 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------------SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------------~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 345 (563)
+.|++.|..|++.+....++|+|.+|.....+ .+|...+++.+|+|.. ..|+|++.||++++||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 99999999999999999999999988654432 5799999999999987 468999999999999987
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
..+-..+. +.. +...+..-.+++++|+|+|++||+|+.||.|.+|
T Consensus 300 ~~k~q~qV-----------------------------ik~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 300 NTKSQLQV-----------------------------IKT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CchhheeE-----------------------------Eee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 64321111 000 0011233357889999999999999999999999
Q ss_pred eCCCCc--eee-eecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCC--CCEEEE
Q 008496 426 NMKQDK--YVH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSL 497 (563)
Q Consensus 426 d~~~~~--~~~-~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~--~~i~~l 497 (563)
+..... +.. .-.+|.. .|++|.|+++|. +|+|-+.|+++++||++.. +++.+..+.. -+-+.+
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 975432 222 2246766 899999999986 7999999999999999864 4555554432 345789
Q ss_pred EEcCCCCEEEEEeC------CCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 498 AFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 498 ~~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
+||||.++|++|+. .|.+.+||..+...+..+.- ...|..+.|+|.=+.|.+|++||++.||
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99999999999864 47899999998887766543 4567889999999999999999999886
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=240.08 Aligned_cols=274 Identities=24% Similarity=0.368 Sum_probs=244.4
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC
Q 008496 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 270 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~ 345 (563)
...+...|.+++|+.+|..|++|+.|+++++|++++.. .....+|.+.|-.++|+|. ...|++++.|++|++||++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 34556789999999999999999999999999987642 2246789999999999875 4689999999999999999
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
.+++........+.+...-|.++..++.+..|..|...+.++.+++..+. ..-.++-+.|+.++.+++.....|+|.|-
T Consensus 96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 99999988887777777777788899999999999999998877665543 34467889999888888777778999999
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
....-+++.++++|...+.+|.|+|+|+ ++|+|+.|..+.+||+..--|+..+..+.-||..|+||.||++
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 9999999999999999999999999997 8999999999999999988888999999999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
||+||.|..|-|=++++|..+...+..++.+.++|+|.-..||.+..|
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999999999999999988765
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.1e-33 Score=254.54 Aligned_cols=279 Identities=27% Similarity=0.475 Sum_probs=232.8
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC---CEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL 289 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~l 289 (563)
.|.+.|.++.-. +.+++||+.||++|+|+..... .+.. .++.++|..++|-... ..|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------------~~~~----~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------------IKTI----VGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------------EEEE----ecCCcceeeeEEEecCCccceE
Confidence 377888888776 7899999999999999975321 1222 2456778888885433 459
Q ss_pred EEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC------------------
Q 008496 290 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------ 346 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~------------------ 346 (563)
++++.|.++++|..+.. ......+|+.+|-++.-.++|..+++||.|.+++||+..+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999986532 1223349999999999999999999999999999998321
Q ss_pred -------CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496 347 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (563)
Q Consensus 347 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d 419 (563)
+..+-.+..|..++.++.|.+...+.+++.|.+|+.||+..++.+..+.+ ...++|++++|..++||+||.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence 12334567899999999999999999999999999999999887777664 4568999999999999999999
Q ss_pred CcEEEEeCCCCc---eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEE
Q 008496 420 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY 495 (563)
Q Consensus 420 g~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~ 495 (563)
..||+||.+++. ..++|.+|...|.++.|+|... +.|++||.|+++++||+++.+ .++.+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 999999998653 4578889999999999999753 589999999999999999887 8999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
++.|+ ++.+|++||.|++|+|+.-.
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc-CCceEEeccCcceEEEeccc
Confidence 99997 56799999999999998643
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=269.42 Aligned_cols=281 Identities=22% Similarity=0.416 Sum_probs=238.3
Q ss_pred cccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 270 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 270 ~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
..+|.+.|+++.|.| .+.+|++|+.|+.|+||++- +.++.++.+|..+|..++|+++|..|+|+|-|+.+++||++|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 346778899999999 89999999999999999964 678889999999999999999999999999999999999999
Q ss_pred CceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
|++...|.... .+.++.+. +...|++++.|+.|+.||++.++.++.+..|-+.|+.+.|-++|+.+++.++|++++|
T Consensus 290 G~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 290 GQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred ceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 99988776533 34556654 3468999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEecCCCCC--EEEEE
Q 008496 425 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREP--VYSLA 498 (563)
Q Consensus 425 wd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~--i~~l~ 498 (563)
|+.+..-.+..+. .+...+.++..+|.+. +++.-+.|+.|.|+.+...- ....+.+|..+ -..+.
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9988776543322 2223455677778765 78888999999999865321 22346677644 45689
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD 560 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g-~~la~~~~~~~v~v~~ 560 (563)
|||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|-. +.+|+|+.+|.|.|||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999888876 678899999965 6999999999999996
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=259.77 Aligned_cols=273 Identities=25% Similarity=0.471 Sum_probs=232.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
..+.|+|+.+ |+..+++|..|.+|+|||..+-.+ ++. ..+|++.|.|+.|. .+.|++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------~~~----L~GHtGSVLCLqyd--~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------LKI----LTGHTGSVLCLQYD--ERVIVSGS 254 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH-------------HHh----hhcCCCcEEeeecc--ceEEEecC
Confidence 3478999988 567889999999999999764321 112 23467889999985 45999999
Q ss_pred CCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---eeEEeeecccCeEEEecCCCc
Q 008496 294 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 294 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 369 (563)
.|.+|+|||.+ |....++.+|...|..+.|+. .+++++|.|.++.+||+.... +...+.+|...+..+++.+.
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 99999999986 667788999999999999974 589999999999999986543 33455677788888888665
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
.++++++|.+|++|++.+...++++.||...|.|+.+ .++++++||.|.+||+||+..+.++..+.+|..-|.++.|.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 7899999999999999999999999999999999988 58999999999999999999999999999999999999996
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
.. -+++|..||+|++||+..+. |+.++..|.+.|..+.| |...|++++.|.+|.|||.
T Consensus 410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 43 58999999999999987653 44556679999999999 5668999999999999999
Q ss_pred CCCee
Q 008496 521 KEGKI 525 (563)
Q Consensus 521 ~~~~~ 525 (563)
.++-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87643
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=234.08 Aligned_cols=290 Identities=19% Similarity=0.322 Sum_probs=242.2
Q ss_pred ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (563)
Q Consensus 202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 281 (563)
+.|.....+|..|+++|.++.|+-+|++.+|+|.|.++|+|+.-.+.. ++.. ..|...|..++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-------------iktY----sghG~EVlD~~ 66 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-------------IKTY----SGHGHEVLDAA 66 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-------------eeee----cCCCceeeecc
Confidence 356667788999999999999999999999999999999999765432 2222 34567899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC--ceeEEeeeccc
Q 008496 282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 358 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~ 358 (563)
.+.|...|++|+.|..+.+||++ |+....+.+|.+.|..++|+.+...+++|+.|.++++||.++. +.++.+.....
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999999999999986 6778899999999999999999999999999999999998764 45566665556
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
.+.+++.. ...+++++.||+++.|+++.+.....+.|| +|+|++|+++++..+.++.|+++|+.|-.+++.+...++
T Consensus 147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred ceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 66666643 456888999999999999988776666554 799999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~lasgs~dg~v~i 517 (563)
|...-+.+..+-..+ ...+++||.||.|.+||+.....+..+..+..+ |.+++++|.-.-+.++...+ +..
T Consensus 224 hkn~eykldc~l~qs-------dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~ 295 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQS-------DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLF 295 (307)
T ss_pred cccceeeeeeeeccc-------ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eec
Confidence 988776665433322 136899999999999999999999999888877 89999999877676666443 556
Q ss_pred Ee
Q 008496 518 WS 519 (563)
Q Consensus 518 w~ 519 (563)
|-
T Consensus 296 ~~ 297 (307)
T KOG0316|consen 296 WY 297 (307)
T ss_pred ee
Confidence 64
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-32 Score=233.02 Aligned_cols=265 Identities=20% Similarity=0.369 Sum_probs=225.9
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEE
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV 363 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 363 (563)
-+|+++++|.+||+|... |....+++...+.|..|...|+++.|++++. ..||+||++++. .+.+|+.|...+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999965 6666777777788999999999998887764 689999998765 467889999999999
Q ss_pred ecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCC
Q 008496 364 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSK 441 (563)
Q Consensus 364 ~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~ 441 (563)
.|..+.+ ..+++.||++++|+++.....+.| .|..+|+++..+|+...|++|..+|.|++||+....+.+.+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9976654 578999999999999985555544 477999999999999999999999999999999887666554 3446
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
.|.++...|+|+ +|+.+..-|+.++|++-+. +++..+..|.+-|..+.||||+++||++|.|.++
T Consensus 169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv 239 (311)
T KOG0315|consen 169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV 239 (311)
T ss_pred ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence 789999999986 7888889999999998654 3456678899999999999999999999999999
Q ss_pred EEEecCCC-eeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 516 HIWSLKEG-KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 516 ~iw~~~~~-~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+||+..+. ++...++++ ..+.+.+||.||.+|++|++|+.+++|++.
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 99999887 555555554 458999999999999999999999999875
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=252.94 Aligned_cols=246 Identities=26% Similarity=0.475 Sum_probs=225.8
Q ss_pred ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCCeEEEEE
Q 008496 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCK 384 (563)
Q Consensus 306 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~ 384 (563)
++...+.+|.+-|.++++.|.+.+|++|+.|++++|||+.++++..++..|...+..+...+.. .+.+++.|+.|.-||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 4455788999999999999999999999999999999999999999999998888888776544 557889999999999
Q ss_pred cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEE
Q 008496 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464 (563)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l 464 (563)
+..++.|+.+-||-+.|.|++.+|.-..|+||+.|.++||||+++...++.+.+|..+|.++.+.|... .+
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp---------qv 292 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP---------QV 292 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC---------ce
Confidence 999999999999999999999999999999999999999999999999999999999999999988654 47
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC-EEEEEEcCC
Q 008496 465 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKE 543 (563)
Q Consensus 465 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~-i~~l~w~~~ 543 (563)
++||+|++|++||++.|+...++..|...|.+++.+|.-..+|++|.|. |+-|++..|..+..+.++.. |..|+-+.|
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccC
Confidence 8999999999999999999999999999999999999999999999986 99999999999888877554 678999888
Q ss_pred CCEEEEEECCCeEEEEEee
Q 008496 544 GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 544 g~~la~~~~~~~v~v~~~~ 562 (563)
| .+++|+.+|.+..||++
T Consensus 372 ~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred c-eEEEcCCceEEEEEecC
Confidence 7 67788899999999987
No 47
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-32 Score=282.30 Aligned_cols=295 Identities=27% Similarity=0.471 Sum_probs=232.9
Q ss_pred CCCCceEEEEECCCCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
.+...|++++.||+|..+|||| .|+.++||....-. ........+ +.........|...|+|+.|++||++||
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEe
Confidence 3457799999999999999999 99999999864311 000000000 1111112234678899999999999999
Q ss_pred EEeCCCeEEEEEcCC-------------------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 291 TGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 291 sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
+|+.|+.|.||.... +....+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-- 163 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-- 163 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--
Confidence 999999999998651 14567889999999999999999999999999999999876532
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
+.++.+|.+.|-.+.|+|-|++|||-++|++|+||+.....
T Consensus 164 ---------------------------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 164 ---------------------------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ---------------------------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence 35677899999999999999999999999999999988777
Q ss_pred eeeeecccC------CCEEEEEEccCCCCCCCCCCcEEEEEE-eC---CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496 432 YVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASA-SF---DSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 432 ~~~~~~~~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~-s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 501 (563)
..+.+..+- ...+.+.|+|+|. +|++. +. -.++.|.+-.+-+.-..+-||..|+.+++|+|
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 777665542 3467899999996 44443 22 34688888777777788999999999999998
Q ss_pred C--------C-----C----EEEEEeCCCcEEEEecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 502 T--------G-----E----YLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 502 d--------g-----~----~lasgs~dg~v~iw~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
- | . .+|+||.|++|.||.....+.+-... .+..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 1 1 1 57899999999999987666543322 25679999999999999999999999999874
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.7e-32 Score=235.28 Aligned_cols=235 Identities=32% Similarity=0.638 Sum_probs=197.9
Q ss_pred CCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCC-c---eeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 273 KSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 273 ~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
+...|..++|+|. |..|++|+.|..||+|+..+ . .+..+ .+|+..|.+++|+|.|++|+++|-|.++.||.-..
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 3456999999998 99999999999999999874 2 22222 47999999999999999999999999999996443
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
+++ ..+.++.||.++|.|++|+++|.+||+||.|..+-||.
T Consensus 93 ~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 93 GEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred Cce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 321 23567899999999999999999999999999999999
Q ss_pred CCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEecCCCCCEEEEEEc
Q 008496 427 MKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 427 ~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~l~~s 500 (563)
...+ .++..++.|.+.|..+.|+|... +|+|+|.|++|++|.-. .-.++.++.+|...|.+++|+
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 8744 45677899999999999999754 89999999999999765 346899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|.|..|++++.|++|+||...+.- +......++.++|. ...||++..|+.++||-
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred CCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 999999999999999999865211 11123568999999 44889988999998873
No 49
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=259.96 Aligned_cols=290 Identities=22% Similarity=0.372 Sum_probs=245.3
Q ss_pred ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (563)
Q Consensus 202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 281 (563)
.+|......+..|.++|..+.|-++...|+|||.|..|++|++...+.. ..+...+..+.|+.++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID 226 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence 4666667788999999999999999999999999999999998654311 1111223356799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe
Q 008496 282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 360 (563)
|.+++..++.++.|+.+++|+.+ .++..++.+|++.|++++|......+++|+.|.++++||+....+.+++.... ..
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~c 305 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QC 305 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cc
Confidence 99999999999999999999987 46778999999999999999888779999999999999999887776554322 22
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc-
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH- 439 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~- 439 (563)
.++... ...++++..|+.|++||++...+......+. .|+++..++++..|.+++.|.++.+.|+++....+.+.+.
T Consensus 306 nDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 306 NDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred cceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence 233322 5568899999999999999998888887765 9999999999999999999999999999999888877643
Q ss_pred ---CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCc
Q 008496 440 ---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE--PVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 440 ---~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~i~~l~~spdg~~lasgs~dg~ 514 (563)
....+.+.|+|++. |+|+||.||.|+||++.++++...+..... .|++++|+|.|.+|++++.++.
T Consensus 384 ~k~asDwtrvvfSpd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred cccccccceeEECCCCc---------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 23478899999986 899999999999999999999888866544 4999999999999999999999
Q ss_pred EEEE
Q 008496 515 MHIW 518 (563)
Q Consensus 515 v~iw 518 (563)
+.+|
T Consensus 455 v~lW 458 (459)
T KOG0288|consen 455 VTLW 458 (459)
T ss_pred eEec
Confidence 9999
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=264.38 Aligned_cols=286 Identities=25% Similarity=0.408 Sum_probs=246.2
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..+.||...|.++++|.+...++||++ +.++||+..+.++.. .+ ....+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciR-------------Ti------~~~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIR-------------TI------TCGYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeE-------------Ee------ccccEEEEEecCCCce
Confidence 456799999999999999999998865 679999987655422 11 1236889999999999
Q ss_pred EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----CceeEEeee-------
Q 008496 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEF------- 355 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~------- 355 (563)
+++|..+|.+.++|.. ..+..++..|.+.|++++.+|++..+++||.|++|++||..- +...+.+..
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 9999999999999975 456667889999999999999999999999999999998631 221111222
Q ss_pred cccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 356 HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
-...++++...++..| +.+-.|+++.+|-+++-+-...+.||.-+|.|++.+||+++++|||.|..|+||-++-|.|..
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 1345778888766555 666789999999999998888999999999999999999999999999999999999999999
Q ss_pred eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 435 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~ 514 (563)
.+.+|...|+++.|.|.. .++.+++.|+.|+-||-.+-+++..+.+|...|++++.+|+|.|++++|.|..
T Consensus 587 S~fAHdDSvm~V~F~P~~---------~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKT---------HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred hhhcccCceeEEEEcccc---------eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 999999999999999964 37889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 008496 515 MHIWSLKEG 523 (563)
Q Consensus 515 v~iw~~~~~ 523 (563)
|++|...+.
T Consensus 658 IRlwE~tde 666 (888)
T KOG0306|consen 658 IRLWERTDE 666 (888)
T ss_pred eEeeeccCc
Confidence 999997653
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=232.37 Aligned_cols=277 Identities=25% Similarity=0.454 Sum_probs=232.6
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 287 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~ 287 (563)
..+++|...|..++|+.+|..||+|+.|+++++|++....... .....++...|-.++|+| ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~---------------~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK---------------ELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh---------------hhcccCCCcchhhheeCCCCCc
Confidence 3467899999999999999999999999999999987542110 111234566788899987 568
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+|++++.|..|++||.. ++....... ++.-.-+.|+|+|.+++.++.|..|...|.++.+.....++... +..+.|.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~ 156 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN 156 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence 99999999999999975 444444443 33345588999999999999999999999998877665544332 3455554
Q ss_pred -CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496 367 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 367 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
++..|....+.|.|.+.....-+|+..+.+|.....||.|+|+|++||+|+.|-.+.+||+..--+++.+..+.-+|.+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 4556777777899999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
+.|+-+|. +||+||.|..|-|=++++|..++.+. +.++.+.++|+|...+||-+..|
T Consensus 237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999986 89999999999999999999999987 78899999999999999977765
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.2e-32 Score=275.19 Aligned_cols=240 Identities=40% Similarity=0.696 Sum_probs=214.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-c--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
...|+++.|+++|+.+++++.++.+++|+... . ....+.+|...|..++|+|++.++++++.|++++|||+...
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence 56799999999999999999999999999843 3 45566899999999999999999999999999999998322
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
...++++.||...|++++|+|+|+++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 1235678899999999999999999999999999999999999
Q ss_pred ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCC--EEEEEEcCCCCEE
Q 008496 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL 506 (563)
Q Consensus 431 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~l~~spdg~~l 506 (563)
+++..+.+|.+.|.+++|++++. +|++++.|+.|+|||+.++. ++..+.++..+ +++++|+|++.+|
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99999999999999999999986 78899999999999999999 56777776655 9999999999999
Q ss_pred EEEeCCCcEEEEecCCCeeEEEEecCC----CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 507 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 507 asgs~dg~v~iw~~~~~~~~~~~~~~~----~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++++.|+.+++|++..++.+..+.++. +++....++.|..+.+|+.|+.|.+||..
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999998887642 45566778899999999999999999974
No 53
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=249.08 Aligned_cols=253 Identities=28% Similarity=0.468 Sum_probs=232.1
Q ss_pred EEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCe
Q 008496 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM 379 (563)
Q Consensus 301 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ 379 (563)
|-....+...+.+|..+|+.+.|+|+-..+++++.|.+|++||..++++...+..|...+.++.+... ..+++|+.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 54455667778899999999999999999999999999999999999999999999999999998764 56788999999
Q ss_pred EEEEEcCC-CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCC
Q 008496 380 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 458 (563)
Q Consensus 380 i~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 458 (563)
+.+|+..+ -..++.+.||...|.+++|-|.|.+|+||+.|.+|++|++.++.++.+|.+|...+..++...+|.
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt----- 248 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT----- 248 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence 99999987 456788889999999999999999999999999999999999999999999999999999888875
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEecCCC
Q 008496 459 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 459 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd---------------g~~lasgs~dg~v~iw~~~~~ 523 (563)
++|++|.|.+|++|-+.++.+...++.|.-+|-+++|.|. |+++++||.|++|++||+.+|
T Consensus 249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 8999999999999999999999999999999999999873 258999999999999999999
Q ss_pred eeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 524 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 ~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.++-++.++. .|.+++|+|-|++|++|..|++++|||++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9999998754 68999999999999999999999999986
No 54
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-32 Score=252.56 Aligned_cols=290 Identities=23% Similarity=0.392 Sum_probs=235.2
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEE-e-eeccc--ccCCCCeEEEEEC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-H-VKGRT--NEKSKDVTTLDWN 283 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~V~~l~~s 283 (563)
+..+..|.-+|.+|+++|++++.++++.|++|.-|++.++......-..+ .+++ + ..... ..|.+.|.+++.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---EVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---hhhhhccCCCCcccccccceeEEEEEc
Confidence 46778899999999999999999999999999999998876432111110 0011 0 00001 2567889999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 284 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
+||++|++|+.|..|.||+... .....+.+|.++|.+++|-...+.|++++.|++|++|++.....
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------------- 278 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------------- 278 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-------------
Confidence 9999999999999999999764 55667899999999999999989999999999999999865432
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
+.++.||++.|.+|....-++.+-.|+.|+++++|++.... ...+++|.+.
T Consensus 279 ----------------------------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~s 329 (479)
T KOG0299|consen 279 ----------------------------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGS 329 (479)
T ss_pred ----------------------------HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCC
Confidence 34567888888888887778888778899999999994433 3457788889
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CC-----------CCCEEEEEEcCCCCEEEEEe
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH-----------REPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h-----------~~~i~~l~~spdg~~lasgs 510 (563)
+-|++|..+. -+++||.||.|.+|++.+.+++++.. +| ...|++++..|...++|+||
T Consensus 330 idcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 330 IDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 9999997654 47899999999999999888887653 22 12799999999999999999
Q ss_pred CCCcEEEEecCCC----eeEEEEecCCCEEEEEEcCCCCEEEEEEC
Q 008496 511 LDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 511 ~dg~v~iw~~~~~----~~~~~~~~~~~i~~l~w~~~g~~la~~~~ 552 (563)
.+|.|++|.+.+| .++..+.-.+-|++|+|+++|++|.+|.+
T Consensus 400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 9999999999887 45666777888999999999998887743
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-31 Score=242.91 Aligned_cols=273 Identities=30% Similarity=0.509 Sum_probs=227.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC---EEEEeeCCCcEEEEECCCCce-
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW- 349 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~v~iwd~~~~~~- 349 (563)
...|.++.-. +..|++|++||.+|+|+..|+...++.+|.++|.++.|.-... .|++++.|.++++|-.+.++.
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 3456665555 6899999999999999999999999999999999998864443 599999999999998776543
Q ss_pred ---eEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcC-------------------------CCcceeeecCCCcc
Q 008496 350 ---KQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIG-------------------------ENRPIKTFAGHQGE 400 (563)
Q Consensus 350 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~-------------------------~~~~~~~~~~h~~~ 400 (563)
.....+|..++-++.- .+...|++++-|.+|.+|+.. ...|+.++.||...
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence 2334588888888884 566789999999999999921 12377889999999
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
|.++.|++ ...+.++|.|.+|+.||+.++..+.++.. ...+.++.++|... +|++|+.|..||+||.++
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPRT 331 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCCC
Confidence 99999997 67788999999999999999988877654 46789999988654 899999999999999987
Q ss_pred Ce---EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCe-eEEEEec-CCCEEEEEEcCCCCEEEEEECCC
Q 008496 481 GK---LLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGK-IVKTYTG-NGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 481 ~~---~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~-~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
+. ..+++.+|...|.++.|+|.. ..|++|+.|+++++||++.-+ .+-.+.+ +..|+++.|+. |..|++|+.|.
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~ 410 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN 410 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence 53 457889999999999999976 457899999999999999876 5555544 56799999975 55889999999
Q ss_pred eEEEEE
Q 008496 555 TVCVLD 560 (563)
Q Consensus 555 ~v~v~~ 560 (563)
++.|+.
T Consensus 411 ~l~i~~ 416 (423)
T KOG0313|consen 411 KLRIFK 416 (423)
T ss_pred eEEEec
Confidence 998874
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.1e-31 Score=258.41 Aligned_cols=327 Identities=23% Similarity=0.351 Sum_probs=248.8
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
.+|+|++-+|+.-+||.|-.||.|+||++.+... + -..++|...|+++.|...|..|++||.|
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------------~----~tfngHK~AVt~l~fd~~G~rlaSGskD 128 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------------L----ITFNGHKAAVTTLKFDKIGTRLASGSKD 128 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCce-------------e----eeecccccceEEEEEcccCceEeecCCC
Confidence 5789998889999999999999999999865321 1 1124567889999999999999999999
Q ss_pred CeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe--------------
Q 008496 296 GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-------------- 360 (563)
Q Consensus 296 g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-------------- 360 (563)
+.|.+||.-+. -...+.+|+..|+...|..+.+++++++.|+.+++||+.+..+..+.-.|.+.+
T Consensus 129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~ 208 (888)
T KOG0306|consen 129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG 208 (888)
T ss_pred ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence 99999997554 456899999999999999888999999999999999998754433221111100
Q ss_pred --------------------------------------------------------------------------------
Q 008496 361 -------------------------------------------------------------------------------- 360 (563)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (563)
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------EEEecC---------------------------------------
Q 008496 361 -----------------------------------LDVDWR--------------------------------------- 366 (563)
Q Consensus 361 -----------------------------------~~~~~~--------------------------------------- 366 (563)
.+++|.
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 001110
Q ss_pred --------------CCceEEEEeCCCeEEEEEcCCCcceee---------------------------------------
Q 008496 367 --------------NNVSFATSSTDNMIYVCKIGENRPIKT--------------------------------------- 393 (563)
Q Consensus 367 --------------~~~~~~~~~~d~~i~~~~~~~~~~~~~--------------------------------------- 393 (563)
++..++.++..+.+.+|+..+.+++++
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 000023344556788888775544433
Q ss_pred -ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC-------Cceeeee-----cccCCCEEEEEEccCCCCC-----
Q 008496 394 -FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-------DKYVHDL-----REHSKEIYTIRWSPTGSGT----- 455 (563)
Q Consensus 394 -~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~i~~~~~~p~~~~~----- 455 (563)
..+|.+.|.+++.+||++.++|||.|.+|++||+.- .+.+-.+ -.-...|.++.+||++..-
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL 528 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence 246888999999999999999999999999998631 1000000 0122345555666555310
Q ss_pred -----------------------------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE
Q 008496 456 -----------------------------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 506 (563)
Q Consensus 456 -----------------------------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l 506 (563)
..|+. .+++|||.|.+|+||-++-|.|-.++-+|...|.++.|-|...++
T Consensus 529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F 607 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF 607 (888)
T ss_pred cCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeE
Confidence 01222 278999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 507 ASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 507 asgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
.++|.|+.|+-||-.+-+.++.+.++ ..|++++.+|+|.++++|+.|.++++|.
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999988888888764 5699999999999999999999999985
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-30 Score=261.30 Aligned_cols=284 Identities=20% Similarity=0.353 Sum_probs=244.9
Q ss_pred cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
..-+..|-.++|||...+++++=-.|.|.+||..=++. ..+..+|.++|..++|+|++.++++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------i~rFdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------IDRFDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------HhhhhccCCccceeeecCCCCeEEe
Confidence 34456788999999999999999999999999753321 2234567899999999999999999
Q ss_pred EeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-Cc
Q 008496 292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV 369 (563)
Q Consensus 292 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~ 369 (563)
||.|-.|+||+.. .++..++.+|-.-|..+.|++.-.+++|+|.|.||+||+..++.++..+.+|.--+++..|.+ ..
T Consensus 69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 9999999999975 456678999999999999999999999999999999999999999999999999999999987 67
Q ss_pred eEEEEeCCCeEEEEEcCCC-----c------------------------ceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496 370 SFATSSTDNMIYVCKIGEN-----R------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~-----~------------------------~~~~~~~h~~~i~~~~~~~~~~~las~s~dg 420 (563)
.++++|.|.+|++||+..- . .-..+.||...|+-++|+|.-.+|+||++|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 8899999999999998531 0 1134679999999999999999999999999
Q ss_pred cEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496 421 TAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498 (563)
Q Consensus 421 ~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~ 498 (563)
.|++|.++..+. +.+.++|...|.++-|+|.- .+++|.|.|++||+||+...+.+.+++...+..+.++
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la 299 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA 299 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCcc---------ceeEecCCCccEEEEecccccceeeeeccCCeEEEEE
Confidence 999999876543 56788999999999999854 2788999999999999999999999977677889999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
-+|..+++|+|-..| +.||.+..
T Consensus 300 ahP~lNLfAAgHDsG-m~VFkleR 322 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDSG-MIVFKLER 322 (1202)
T ss_pred ecCCcceeeeecCCc-eEEEEEcc
Confidence 999999888665444 66777763
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-31 Score=265.27 Aligned_cols=278 Identities=24% Similarity=0.392 Sum_probs=245.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
+..|..++|+|.-.+++++-.+|.|++||.. +.+...|..|.+||.++.|+|....|+||+.|..|++|+..+.++..+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 5668999999999999999999999999965 667788999999999999999999999999999999999999999999
Q ss_pred eeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 353 FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
+..|..-+..+.|.... -++++|.|.+|++|+..+.+.+..+.||...|.|.+|+|...+++|+|-|.+|||||+..-+
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 99999988888887654 56788999999999999999999999999999999999999999999999999999974210
Q ss_pred ----------------------------e-eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496 432 ----------------------------Y-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 482 (563)
Q Consensus 432 ----------------------------~-~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 482 (563)
. -+.+.+|...|.-++|+|.-. +++||+.|..|++|.....+
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEecccc
Confidence 0 123567888899999998764 89999999999999876433
Q ss_pred --EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 483 --LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 483 --~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
.+-++.+|..+|.++-|+|.-..|++.|.|++|+|||+...+.++++.. ++.-+.++-+|..+.+|+|..+| +.||
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 2456789999999999999999999999999999999999999999954 66788999999999999996655 5666
Q ss_pred Ee
Q 008496 560 DF 561 (563)
Q Consensus 560 ~~ 561 (563)
.+
T Consensus 319 kl 320 (1202)
T KOG0292|consen 319 KL 320 (1202)
T ss_pred EE
Confidence 54
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=245.66 Aligned_cols=279 Identities=23% Similarity=0.396 Sum_probs=232.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
.|...|..+.||++|++||+|+.|.+..+|.+.. +++.++.+|..+|.-+.|+||.++|++|+.|..+++||+.++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 4678899999999999999999999999998542 456789999999999999999999999999999999999999
Q ss_pred ceeEEeeec-ccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 348 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
.....+... ...+.+..|.+ ...|++++.|+.+..|+++.+. ...+.+-. ..|.+++..+||+++++...|..|++
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceee
Confidence 987766544 45677788864 5689999999999999997654 23333332 35889999999999999999999999
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC--EEEEEEcC-
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP- 501 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~l~~sp- 501 (563)
++..+...+..+ ....+|+++..+.++. ++++.-.+..|++||++..+.+..+.||+.. |-.-+|.-
T Consensus 381 ~~~e~~~dr~li-se~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 381 YNREARVDRGLI-SEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred echhhhhhhccc-cccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 998765444333 3456899999988875 5566677899999999988888888888765 33446643
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCC-CEEEEEECCCeEEEEEe
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG-DKIAACFANHTVCVLDF 561 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g-~~la~~~~~~~v~v~~~ 561 (563)
+..++|+||.|+.|+||+..+|+++..+.++. .|..++|+|.. .++|+++.||+|+||..
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 55899999999999999999999999999875 58999999976 58899999999999964
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=239.81 Aligned_cols=290 Identities=20% Similarity=0.352 Sum_probs=238.9
Q ss_pred cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
.|.++.+.|..|||||++|++|+.||.|-+|++.+|+.....+....... -.....|.|++||.|..++++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~f---------MMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNF---------MMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcce---------eecccceEEEeecccHHHhhc
Confidence 35667789999999999999999999999999988875443322211111 123567999999999999999
Q ss_pred EeCCCeEEEEEcC-CceeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 292 GSYDGQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 292 g~~dg~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
|+.||.|++|... |.....|. .|+..|+++.|+.++..+++++.|.++++.-+.+|+
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------------------- 339 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------------------- 339 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch---------------------
Confidence 9999999999965 55555565 799999999999999999999999999998776554
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CCCEEEEE
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR 447 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~ 447 (563)
.++.|+||.+.|+.+.|.++|..++++|.||+|++|+.++..++.+++.. .-+|.++.
T Consensus 340 --------------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~ 399 (508)
T KOG0275|consen 340 --------------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVI 399 (508)
T ss_pred --------------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEE
Confidence 45678899999999999999999999999999999999999999888754 34567777
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
.-|... ..++.|...++|.|.++. |+.+.++.. ..+..-+.+.||-|.|+...+.|+.++.|.+.+|+
T Consensus 400 ~~PKnp--------eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 400 LLPKNP--------EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EcCCCC--------ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 666542 146678888999999986 777777743 23456677899999999999999999999999999
Q ss_pred eEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 525 IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 525 ~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+.+++.-+ ..+..++-+|.-+.||+-+.||.+.+|.
T Consensus 471 LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 471 LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98887654 3577899999999999999999888873
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-31 Score=228.36 Aligned_cols=279 Identities=23% Similarity=0.411 Sum_probs=226.8
Q ss_pred EEEEECCC-CCEEEEe-------eCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCEE
Q 008496 219 CACAWSPA-GSLLASG-------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL 289 (563)
Q Consensus 219 ~~~~~sp~-~~~latg-------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l 289 (563)
.++.|||- .++||.+ .+.|.+.|-++.++.. +.....+ .-...+..++|++. .+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g----------i~e~~s~-----d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG----------IQECQSY-----DTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC----------eEEEEee-----ecccceeEeeecCCCcceE
Confidence 57889994 3443332 2467888888753221 1111221 12456889999985 5788
Q ss_pred EEEeCCCeEEEEEcC--CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 290 ATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
++++.||.++|||.. ...+..++.|+..|+++.|++.. ..++++|.|++|++|+.....-+++|..|...++...|.
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 899999999999954 34566788999999999999854 568888999999999999988899999999999999886
Q ss_pred C--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCC
Q 008496 367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE 442 (563)
Q Consensus 367 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~ 442 (563)
+ ...|+++++|+++++||++.......+..|..+|.|+.|+. +...|+||+.|+.||+||++.-+ ++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 5 46899999999999999987655555889999999999986 56788999999999999998654 57788999999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~ 520 (563)
|..++|+|... .+|||+|.|=++||||...+ .++.+...|+.-|..+.||+ ++.++|+++.|..++||+.
T Consensus 237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999764 38999999999999998844 45566777888899999998 4689999999999999984
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=265.39 Aligned_cols=271 Identities=30% Similarity=0.516 Sum_probs=241.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
...+++..|. +.++++++.+++|++|+.. +..... +.+|.+.|+++++...+..+++|+.|+++++||..++.+..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 4568888888 5689999999999999965 555555 99999999999998878999999999999999999999999
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
.+..|...+..++.. ...+++++.|.+|++|++.++..+.++.||.+.|+++..+ +.++++|+.|++|++||..+++
T Consensus 286 ~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 999999888777653 3356668899999999999999999999999999999997 8899999999999999999999
Q ss_pred eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 432 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs 510 (563)
+++++++|...|+++.+.+. ..+++|+.|++|++||+++. +++.++.+|..-+..+.+ .+++|++++
T Consensus 363 cl~sl~gH~~~V~sl~~~~~----------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE----------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred eeeeecCCcceEEEEEecCc----------ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence 99999999999999987653 16899999999999999999 999999999988866655 677999999
Q ss_pred CCCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496 511 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563 (563)
Q Consensus 511 ~dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~ 563 (563)
.|++|++||..++++++++.+. +.|..+++. -..+++++.++++.+||+++
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 9999999999999999999873 778888887 45777778999999999974
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=7.7e-30 Score=222.85 Aligned_cols=280 Identities=24% Similarity=0.391 Sum_probs=231.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
+|..+++.+.++.+|.+|++++.|..+.||-. +|....+..+|++.|+++..+-+.+++++|+.|.++++||+.+|+.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 45678999999999999999999999999975 89999999999999999999999999999999999999999999998
Q ss_pred EEeeecccCeEEEecCCCceEEEEeC------CCeEEEEEcC-------CCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSST------DNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~~~~~~-------~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
.++... .++..+++.....++..+. .+.|.++++. ...|+..+..+...++.+-|+|-+++|++|.
T Consensus 88 a~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 ATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 887653 3555666654443333333 3468888887 4567888888899999999999999999999
Q ss_pred CCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496 418 DDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 496 (563)
Q Consensus 418 ~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 496 (563)
+||.|.+||.+++. .+...+.|...|+.++++|+.. +++++|.|.+-++||+++-.++.++. ...||++
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~ 236 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT 236 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence 99999999999974 5566678999999999999875 78999999999999999999988887 4579999
Q ss_pred EEEcCCCCEEEEEeCCC--cEEEEecCCCee------------EEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 497 LAFSPTGEYLASGSLDK--SMHIWSLKEGKI------------VKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 497 l~~spdg~~lasgs~dg--~v~iw~~~~~~~------------~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+++|.-.+++.|+... .|.--+.+.|+. +..+++ -++|++++++|+|+..++|..||.|+|..|
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 99999888887776442 233333333432 222223 367999999999999999999999999876
Q ss_pred e
Q 008496 562 R 562 (563)
Q Consensus 562 ~ 562 (563)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 4
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.6e-31 Score=227.19 Aligned_cols=275 Identities=23% Similarity=0.393 Sum_probs=222.7
Q ss_pred EEEEECC-CCCEEEEE-------eCCCeEEEEEcC-CceeEee--ccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008496 278 TTLDWNG-EGTLLATG-------SYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 278 ~~l~~s~-~g~~l~sg-------~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 345 (563)
.++.||| -.++|+.+ ..+|.+.|-+.+ ++-+..+ -.-...++.++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4677888 22334333 235788888875 2222222 2346789999999875 678899999999999964
Q ss_pred C-CceeEEeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCc
Q 008496 346 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT 421 (563)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~ 421 (563)
. ...+..++-|...+.+++|. ....|++++-|++|++|+....+.+.+|.||..-|...+|+|. .++++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 34566788899999999996 4567899999999999999989999999999999999999995 689999999999
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEc
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s 500 (563)
+++||++.......+..|..+|.++.|+.-. ..+|++|+.|+.||+||+++- .++.++.+|.-.|..+.||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~--------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYN--------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccC--------CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 9999998654444588999999999998643 358999999999999999864 4688999999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEecCCC-eeEEEEecCCC-EEEEEEcC-CCCEEEEEECCCeEEEEE
Q 008496 501 PTG-EYLASGSLDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD 560 (563)
Q Consensus 501 pdg-~~lasgs~dg~v~iw~~~~~-~~~~~~~~~~~-i~~l~w~~-~g~~la~~~~~~~v~v~~ 560 (563)
|.. ..||+++.|-+++|||...+ .++.++..+.. +..+.||+ ++..+|.++.|+.+.||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 975 78899999999999999754 34555554433 67899998 567999999999999997
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=243.69 Aligned_cols=274 Identities=23% Similarity=0.359 Sum_probs=233.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
|...|..+.|-++...|++|+.|..|++|++.+. +..++.+..++|+.+.|.++++++++++.|+.+++|++.....
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~ 253 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL 253 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence 4567889999999889999999999999998764 4557888889999999999999999999999999999999999
Q ss_pred eEEeeecccCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 350 KQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
..++..|.+.+.++.+.-... .++++.|.+|..||+....+.+++.. ...++.|..+ ...+++|..|++||+||.+
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEecc
Confidence 999999999999998865444 89999999999999988766655432 2334555554 5678899999999999999
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC----CCCEEEEEEcCCCC
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTGE 504 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----~~~i~~l~~spdg~ 504 (563)
+..++..+..+. .|+++..++++. -|.+++.|.++.+.|+++......+.+. ....+.+.|||++.
T Consensus 331 s~~~~~sv~~gg-~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 331 SADKTRSVPLGG-RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred CCceeeEeecCc-ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999888877665 899999999875 5677899999999999988776665431 12378999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEEec---CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~~~---~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
|+|+||.||.|+||++.++++.+.... +.+|++++|+|.|+.|+++..++.+++|
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999999998877754 3469999999999999999999999987
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=258.89 Aligned_cols=285 Identities=29% Similarity=0.472 Sum_probs=247.3
Q ss_pred EecC-CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 210 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 210 ~l~~-h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.+.+ |...+.+..|+ +..+++|+.|+++++|+..++.. + .....+|.+.|.++++...+.+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-------------i---~~~l~GH~g~V~~l~~~~~~~~ 263 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-------------I---LTRLVGHFGGVWGLAFPSGGDK 263 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceE-------------E---EeeccCCCCCceeEEEecCCCE
Confidence 3444 56778888888 67889999999999999875431 1 1112456788999999988899
Q ss_pred EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
|++|+.|.++++||.. |....++.+|.+.|.++... ..++++|+.|.+|++|++.++.+++.+..|.++|.++...
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 9999999999999964 77888999999999998754 4578889999999999999999999999899999999887
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCEEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~ 446 (563)
...+++++.|++|.+|++...+++.++.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++..+..|..-+..+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 667888999999999999999999999999999999988765 88999999999999999999 9999999999888766
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
.+.. ..|++++.|++|++||...++++..+.+ |...|+.+++. ...+++++.||++++||++++++
T Consensus 420 ~~~~-----------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 420 LLRD-----------NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccc-----------ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 6533 2789999999999999999999999998 67889999887 56788899999999999999988
Q ss_pred EEEE
Q 008496 526 VKTY 529 (563)
Q Consensus 526 ~~~~ 529 (563)
.+.+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 7765
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-29 Score=248.03 Aligned_cols=273 Identities=25% Similarity=0.470 Sum_probs=233.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
..-++|+. .+.|++|. ...|++|+... ........+...|+++.|+++|.+|+.|..+|.|.|||..+.+....+..
T Consensus 180 ~nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 34578984 45666655 35899999754 43444444589999999999999999999999999999998888888888
Q ss_pred -cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 356 -HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
|...+.++.|. ...+.+++.++.|..++++....+.. +.+|..+|..++|++|+.++|+|+.|+.+.|||.....+.
T Consensus 258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 88899999998 66778899999999999987765544 8899999999999999999999999999999999888888
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE--E
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS--G 509 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las--g 509 (563)
..+..|...|.+++|+|--.+ +||+| +.|++|++||+.+|+.+..+.. ...|.+|.|++..+-|++ |
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred EEEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecC
Confidence 999999999999999997543 78885 5699999999999999888764 467999999999866665 3
Q ss_pred eCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 510 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 510 s~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
-.++.|.||+..+.+++..+.++ ..|..++|+|||..+++|.+|.++.+|++
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 45778999999998888888765 46999999999999999999999999986
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=239.24 Aligned_cols=275 Identities=22% Similarity=0.397 Sum_probs=233.1
Q ss_pred CCCCeEEEEECCCCCE-EEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 273 KSKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
....|++++|||...+ +|+++ .-.+.||+..+. ....+...+..|+++.|..||..|++|+..|.|+|+|..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3567999999995533 33333 357888886653 33456777889999999999999999999999999998777777
Q ss_pred EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeC
Q 008496 351 QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNM 427 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~ 427 (563)
..+..|..|+..+.| .++..|+++++|+.+.+|++.+...+..+.+|+..|.|.+|+|-. .+++|||.||+||+||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 888889998877766 456788999999999999999888766899999999999999964 57899999999999999
Q ss_pred CCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCE
Q 008496 428 KQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 428 ~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
+.. ..+.++ .|..+|-.+.+-|.|. ++++++. ..|++||+-+| +.+..+..|...|+|+++..++..
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 877 455554 5899999999999875 6777764 58999999865 455555669999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
|.+||.|+.|+|||+.+.+++..+.-.++|.+++.+|+++.+++|.+||.+.+-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 999999999999999999999999999999999999999999999999987654
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9e-28 Score=204.83 Aligned_cols=294 Identities=27% Similarity=0.402 Sum_probs=234.6
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCC---CCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN---GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
.+..|.+++|+|.|.+.|.|+...+.||-..+.-.....+.. .|..+.. + +...+.+.|.|.+|||+|++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~-k----r~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC-K----RNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe-e----eccccCccEEEEEecCccCeEE
Confidence 456799999999999999999999999986553221111111 1111111 1 1223467899999999999999
Q ss_pred EEeCCCeEEEEEcCCc------eeEeeccCCCCEEEEEeCCC----CCEEEEee-CCCcEEEEECCCCceeEEeeecccC
Q 008496 291 TGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
+|+.|.+|++.-.+.. ....+.-|.+.|..++|-.+ +..|++++ .|..|.+-|..+++-.+.+..|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 9999999999765432 23467779999999999643 34566544 4667777788899888899999999
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC--C-----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
++.+---++..|++++.|.+|++||++-+..+.++.. | ...|.+++..|.|++|++|..|....+||++.+++
T Consensus 186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 9888655677899999999999999998887776642 2 24689999999999999999999999999999999
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCEEEEEEcCCCCEEEE
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~i~~l~~spdg~~las 508 (563)
++.+..|+..|.++.|+|.. .+|++||.|..|++-|+.-. -.+..+..|...+..+.|+|..--+++
T Consensus 266 iq~f~phsadir~vrfsp~a---------~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGA---------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeeeCCCccceeEEEeCCCc---------eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 99999999999999999965 48999999999999998631 234455678888999999999988899
Q ss_pred EeCCCcEEEEecC
Q 008496 509 GSLDKSMHIWSLK 521 (563)
Q Consensus 509 gs~dg~v~iw~~~ 521 (563)
.|.|.++.+|-+.
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 9999999999753
No 70
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=4.4e-29 Score=244.33 Aligned_cols=335 Identities=23% Similarity=0.411 Sum_probs=262.9
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.++.||.+.|+++.|+|.+..|+++|.|.++.+|.-.+.+ .+....-..+...+........-|+|+++.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc----------ceEEEEEEeecccccccceeeEEEcCCCCE
Confidence 4567999999999999999999999999999999854321 112111122333334456888999999999
Q ss_pred EEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--Ccee--EEeeecccCe
Q 008496 289 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWK--QQFEFHSGPT 360 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~--~~~~~~~~~~ 360 (563)
+++-++.|..++|.... .....+.+|.+.|..+.|+|.|.+|++.|.|.|-|++-... .++. ...+.|.-..
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999999999998333 23345789999999999999999999999999999986541 1122 1234566667
Q ss_pred EEEecCC-CceEEEEeCCCeEEEEEcCC--------------------------------Ccc-----------------
Q 008496 361 LDVDWRN-NVSFATSSTDNMIYVCKIGE--------------------------------NRP----------------- 390 (563)
Q Consensus 361 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~--------------------------------~~~----------------- 390 (563)
.++.+.+ +..|+++.....+++++... +++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 7788877 78888888888777765311 000
Q ss_pred ---------------------------eeeecCCCcceeEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceeeeecc
Q 008496 391 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 391 ---------------------------~~~~~~h~~~i~~~~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~~ 438 (563)
+..+.||..+|.+++.+|+++++||++... .|++|+..+...+..+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 122458889999999999999999998754 589999999888889999
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~spdg~~lasgs~dg~ 514 (563)
|+-.|+.++|+|++. +|++.|.|.++.+|....... ....+.|+.-|.+..|+|++.++||+|.|++
T Consensus 571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 999999999999987 899999999999998754321 2236789999999999999999999999999
Q ss_pred EEEEecCCC--eeEE---EEecCCCEEEEEEcC-----CCCEEEEEECCCeEEEEEee
Q 008496 515 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNK-----EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 515 v~iw~~~~~--~~~~---~~~~~~~i~~l~w~~-----~g~~la~~~~~~~v~v~~~~ 562 (563)
|+||...+. +.+. ..+....++.++|.| .+..+|+|...|.+.||.++
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999877 3322 233456788888876 24488999999999999875
No 71
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.4e-29 Score=252.61 Aligned_cols=275 Identities=17% Similarity=0.220 Sum_probs=204.5
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC-CCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEE
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG 292 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg 292 (563)
-..|.....++++..+++++.+..+..|+...+..... ...+... .......+|...|++++|+| ++++|++|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 34566777788888888899999999998654321100 0000000 00001234678899999999 88999999
Q ss_pred eCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 293 SYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 293 ~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
+.||.|++|+.... ....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-------------- 160 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-------------- 160 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------
Confidence 99999999997532 345788999999999999986 6899999999999999976532
Q ss_pred ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC-
Q 008496 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE- 442 (563)
Q Consensus 364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~- 442 (563)
+..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+.
T Consensus 161 ---------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 161 ---------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred ---------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc
Confidence 2345678889999999999999999999999999999999998888888765
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCe-EEEEecCC-CCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGK-LLYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSMH 516 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~-~~~~~~~h-~~~i~~l~~spdg~~lasgs-~dg~v~ 516 (563)
+..+.|.+++. .++.+| +.|+.|++||+++.. .+.....+ ...+....|+|++++|++|+ .|+.|+
T Consensus 214 ~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 214 SQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred ceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 34677887643 244433 358999999998754 33333323 34566778999999999887 599999
Q ss_pred EEecCCCeeEEEEec--CCCEEEEEEcCC
Q 008496 517 IWSLKEGKIVKTYTG--NGGIFEVCWNKE 543 (563)
Q Consensus 517 iw~~~~~~~~~~~~~--~~~i~~l~w~~~ 543 (563)
+||+.+++++..+.. ...+..++|.|.
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999987765533 234556666663
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.9e-29 Score=252.02 Aligned_cols=244 Identities=20% Similarity=0.347 Sum_probs=197.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee--------------EeeccCCCCEEEEEeCC-CCCEEEEeeCCCcEE
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI 340 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~ 340 (563)
.|.....++++..+++++.+..+..|+..|... ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 344555566767778888888888887654321 13678999999999999 788999999999999
Q ss_pred EEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCC
Q 008496 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD 419 (563)
Q Consensus 341 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~d 419 (563)
+||+.++.... ....++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus 102 IWdi~~~~~~~----------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 102 GWGIPEEGLTQ----------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EEecCCCcccc----------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 99987542110 0123566788999999999999985 699999999
Q ss_pred CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-EEEEE
Q 008496 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA 498 (563)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~ 498 (563)
++|+|||+.++..+..+..|...|.+++|+|++. +|++++.|++|+|||+++++.+..+.+|... +..+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 9999999999998889999999999999999875 7999999999999999999999999989765 45678
Q ss_pred EcCCCCEEEEEe----CCCcEEEEecCCCe-eEEEEe--cCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEee
Q 008496 499 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYT--GNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 562 (563)
Q Consensus 499 ~spdg~~lasgs----~dg~v~iw~~~~~~-~~~~~~--~~~~i~~l~w~~~g~~la~~~-~~~~v~v~~~~ 562 (563)
|+|++..|++++ .|+.|++||+++.. .+.... ....+....|+++++.|++|+ .|+.|.+||++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 999988887654 47899999998754 333332 234566778999999999886 59999999986
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-30 Score=256.42 Aligned_cols=291 Identities=21% Similarity=0.374 Sum_probs=207.0
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE--ECCCCCEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA 290 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~g~~l~ 290 (563)
+|.+.|.++.||+||++||+||.|+.||||.+................... .. ......+++.-. -.......-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~--~~--~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFE--YN--ANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhh--hh--hccccCccccccccccccccccc
Confidence 899999999999999999999999999999986532111000000000000 00 000000111100 000011111
Q ss_pred EEeCCCeEEE----EEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 291 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 291 sg~~dg~i~v----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
.+.....+.+ +-...+..+.+.+|.+.|..|.|+.+ ++|+++|+|+||++|++...+++..|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F------------- 406 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF------------- 406 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence 2222222221 12234567789999999999999976 48999999999999999877665543
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
.|...|+||+|+| |.++|++||-||.+|||++...+.+.- .....-|++
T Consensus 407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA 456 (712)
T KOG0283|consen 407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA 456 (712)
T ss_pred -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence 2888999999999 678999999999999999987766543 334478999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---------CCCCCEEEEEEcCCC-CEEEEEeCCCcE
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTG-EYLASGSLDKSM 515 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~l~~spdg-~~lasgs~dg~v 515 (563)
++|.|+|. ..+.|+.+|.+++|++...+...... .|. .|+.+.|.|.. ..|.+.+.|.+|
T Consensus 457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCce
Confidence 99999986 57789999999999998766654432 133 79999998754 346667889999
Q ss_pred EEEecCCCeeEEEEecC---CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 516 HIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 516 ~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+|||.++..++..|++. ..-...+|+.||++|+.++.|..|.||+.
T Consensus 527 RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 527 RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 99999888888887753 22356789999999999999999999986
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.9e-30 Score=221.34 Aligned_cols=287 Identities=23% Similarity=0.373 Sum_probs=236.4
Q ss_pred eEecCCCCceEEEEECC---CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 209 TILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp---~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
.+..||+-+|-.++||| +|-+|.+++.|+.-.+=+=.+|.. +..+ .+|.+.|.....+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------------igtf----eghkgavw~~~l~~n 70 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------------IGTF----EGHKGAVWSATLNKN 70 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------------EEee----eccCcceeeeecCch
Confidence 35689999999999997 678999999999766544333321 1122 345678999999999
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEE
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDV 363 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~ 363 (563)
....++++.|-+.+|||. .|.....| .|+--|.+++|+.+.++|++|+.++.++|+|++..+. ...+..|.+.+..+
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 999999999999999994 56666666 4888999999999999999999999999999976543 44677888889888
Q ss_pred ecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC
Q 008496 364 DWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 364 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
-|. .+..|+++..|++|++||..++..++++. ....|+++.++++|.+|. -..-+.|++||.++-..+..+... ..
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P-~n 226 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMP-CN 226 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCc-cc
Confidence 884 56778888999999999999999888775 456899999999999874 456678999999988877765533 34
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
|.+...+|.. .++++|+.|..++.||..+|..+..+ ++|.+||.|+.|||||...|+||.||+|++|.+.
T Consensus 227 V~SASL~P~k---------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 227 VESASLHPKK---------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred cccccccCCC---------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 6666666654 26889999999999999999998885 8999999999999999999999999999999987
Q ss_pred CCee
Q 008496 522 EGKI 525 (563)
Q Consensus 522 ~~~~ 525 (563)
.++.
T Consensus 298 ~~~~ 301 (334)
T KOG0278|consen 298 PGKT 301 (334)
T ss_pred CCCc
Confidence 6553
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=223.51 Aligned_cols=259 Identities=27% Similarity=0.490 Sum_probs=201.4
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCC---------cCCCCCCCceEEEEEeeecccccCCCCe
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~V 277 (563)
....+..|+.++.+.+|||||.++||||.|..|+|.|++.... ....+.+| +++.+ ..|..+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRTl----YDH~dev 175 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRTL----YDHVDEV 175 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEeeh----hhccCcc
Confidence 4567889999999999999999999999999999999863210 01111111 22222 3456789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCce-eE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDL-KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
+++.|+|....|++|+.|++|+++|..... +. ..-.-..+|.++.|+|.|.+|+.|..-.++++||+++.++
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc----- 250 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC----- 250 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-----
Confidence 999999999999999999999999975421 11 1122456899999999999999999999999999987643
Q ss_pred ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
|+++-. -.+|.+.|+++.+++.+++.+|+|.||.|+|||--+.+++.
T Consensus 251 ----------------fvsanP-----------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 251 ----------------FVSANP-----------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred ----------------eeecCc-----------------ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 222111 13589999999999999999999999999999999999998
Q ss_pred eec-ccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec------------------------
Q 008496 435 DLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------------------------ 488 (563)
Q Consensus 435 ~~~-~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------ 488 (563)
++. +|. ..|.+..|..++. ++++.++|..+++|.+.+++++.+..
T Consensus 298 t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVL 368 (430)
T ss_pred HHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEE
Confidence 875 454 4688888988775 78899999999999999888776553
Q ss_pred -------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 489 -------------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 489 -------------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
+|.+++..+.-||.+..+.+||.|.++++|-.
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 46666677777777777777777777777753
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-27 Score=202.15 Aligned_cols=278 Identities=24% Similarity=0.461 Sum_probs=227.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------------c-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 337 (563)
+..|.+++|+|.|.+.++|+...+.||..... . +...-..|++.|+|.+|+|+|..+++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 46799999999999999999999999875211 0 1123356899999999999999999999999
Q ss_pred cEEEEECCCCcee-----EEeeecccCeEEEecCCC-----ceEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEE
Q 008496 338 TAIVWDVKTEEWK-----QQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (563)
Q Consensus 338 ~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~ 406 (563)
+|++.-.+...+. -.|..|.+.+.++.|.++ ..++++ ..|..|++-|.+.+++...+.||++.|.++ +
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence 9998765443322 257789999999988643 234443 467789999999999999999999999877 3
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--c-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496 407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 479 (563)
Q Consensus 407 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 479 (563)
+-++-++++||.|.+||+||++-..++.++.. | ...|.+++..|.|. +|++|-.|....+||++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR 261 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence 45688999999999999999998888776532 2 35688999999886 89999999999999999
Q ss_pred CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC---e--eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 480 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---K--IVKTYTGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 480 ~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~---~--~~~~~~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
-++.+..+-.|...|.++.|||...||.+||.|..|++-|+... + .+..-.....+..+.|+|..-.+...+.|+
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 99999999999999999999999999999999999999998632 1 122223445677889999988788888999
Q ss_pred eEEEEEe
Q 008496 555 TVCVLDF 561 (563)
Q Consensus 555 ~v~v~~~ 561 (563)
++.+|-+
T Consensus 342 t~tlwa~ 348 (350)
T KOG0641|consen 342 TATLWAL 348 (350)
T ss_pred eEEEecc
Confidence 9999854
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-27 Score=212.60 Aligned_cols=278 Identities=22% Similarity=0.339 Sum_probs=220.2
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
++.-.+.|+++.|+++|.+|++++.|.+++|||..+++... .. ..+...|..++|....+.++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-------------ti----~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-------------TI----NSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-------------Ee----ecccccccEEEEecCCceEE
Confidence 33345779999999999999999999999999988765321 11 11234577778877666676
Q ss_pred EEeC--CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 291 TGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 291 sg~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
.++. |.+||.-++. .+.+..|.+|+..|.+|+.+|-+..+++++.|++|++||++..++...+..
T Consensus 73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------ 140 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------ 140 (311)
T ss_pred EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------
Confidence 6666 8899999975 567778999999999999999999999999999999999987654332211
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeec---ccCCC
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKE 442 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~---~~~~~ 442 (563)
..-..++|+|.|-++|++.....|++||++.- .+..++. ....+
T Consensus 141 -------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 141 -------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred -------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 11225789999999999998889999999853 3444443 33567
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i---~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.+.+.|+|+|+ +|+.+...+.+++.|.-+|..+.++..+...- ...+|+|||+++.+|+.||+|++|+
T Consensus 190 w~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 190 WTDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred eeeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 89999999997 56667788999999999999988887765432 5789999999999999999999999
Q ss_pred cCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 520 LKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 520 ~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
+++|+.+..+.+ .+.+..+.|+|.-..+|+++.. +.+|
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw 300 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFW 300 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCCceeeeeecCce--EEEE
Confidence 999999999887 3557788999998888887554 4444
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.1e-29 Score=216.16 Aligned_cols=286 Identities=21% Similarity=0.341 Sum_probs=225.8
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..|.||.-+++.+.++.+|.+|+|++.|.++.+|---+|.. + +.+.+|.+.|.|++.+-+.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------------l----Gty~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------------L----GTYDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------------e----eeecCCCceEEEEEecCCcce
Confidence 46789999999999999999999999999999997655432 1 334456789999999999999
Q ss_pred EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECC-------CCceeEEeee
Q 008496 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVK-------TEEWKQQFEF 355 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~-------~~~~~~~~~~ 355 (563)
+++|+.|.++++||.. |+.+..+ ....+|..+.|+++|++++.+..+ +.|.++|++ ..+....+..
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 9999999999999976 5555444 467899999999999988876543 578999987 3344455556
Q ss_pred cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCc-ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
+...+..+-|... ..++++..||.|..|++.++. .+..-.-|...|+.++++||..+++|+|.|.+.++||..+-..+
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 6667777888654 566888999999999999864 45556779999999999999999999999999999999998887
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCC------------eEEEEecCCCCCEEEEEEc
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVELG------------KLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~------------~~~~~~~~h~~~i~~l~~s 500 (563)
.++. ...++.+.+++|... .+++.|+.+- .|.-=+.+.| +.+..+++|-+||++++|+
T Consensus 226 Kty~-te~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 226 KTYT-TERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred EEee-ecccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 7765 356788888888643 2444444332 1211122222 3455678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q 008496 501 PTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~ 521 (563)
|+|+..++|+.||.|++.-..
T Consensus 297 PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcccccCCCCceEEEEEec
Confidence 999999999999999987654
No 79
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8.5e-27 Score=232.88 Aligned_cols=328 Identities=20% Similarity=0.297 Sum_probs=249.5
Q ss_pred CceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 206 ~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
..+.+++++.+.|+++.=+|--.++|.|-.+|+|.|+++..++.. ..+++ ..+.|+.++|.-|
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~-------d~g~VtslSFrtD 255 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQ-------DWGRVTSLSFRTD 255 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEc-------cccceeEEEeccC
Confidence 346788999999999999999999999999999999999765421 12222 1367999999999
Q ss_pred CCE-EEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----eeEEeeeccc
Q 008496 286 GTL-LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSG 358 (563)
Q Consensus 286 g~~-l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~ 358 (563)
|+. +++|+..|.+.+||++++... ....|.+.|..+.|.|....+++++.|+++++|=..++. ..+.-.+|..
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 965 566777799999999876443 345799999999999999999999999999998444322 2222233444
Q ss_pred CeEEEecCC--Cce-----------------------------------------------------------------E
Q 008496 359 PTLDVDWRN--NVS-----------------------------------------------------------------F 371 (563)
Q Consensus 359 ~~~~~~~~~--~~~-----------------------------------------------------------------~ 371 (563)
|..++.+.. ... +
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 444443321 111 2
Q ss_pred EEEeCCCeEEEEEcCCCcc-eeeec-----CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee---cccCCC
Q 008496 372 ATSSTDNMIYVCKIGENRP-IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSKE 442 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~~-~~~~~-----~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~---~~~~~~ 442 (563)
++.-++...+.|+.++... -.++. .....+++++.++-|++.+.|+..|+|.+|++.++.....+ ..|.++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 2223334455555544322 11111 12256889999999999999999999999999999888887 589999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-------------------------------------
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY------------------------------------- 485 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------------------------- 485 (563)
|+.++....+. .+++++.+|.+++||......+.
T Consensus 496 V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 496 VTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred eeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 99999765443 68889999999999876543221
Q ss_pred ----EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC-CeEEEE
Q 008496 486 ----SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL 559 (563)
Q Consensus 486 ----~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~-~~v~v~ 559 (563)
.+.+|...|++++|||||+||++++.|++|++||+.++.++..+.-...+..++++|.|++||+...| ..|.+|
T Consensus 567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 23379999999999999999999999999999999999999998888889999999999999999887 456666
No 80
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.8e-28 Score=264.21 Aligned_cols=256 Identities=19% Similarity=0.316 Sum_probs=211.3
Q ss_pred CCeEEEEEcCCce-e-----EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--------eeEEeeecccCe
Q 008496 295 DGQARIWSTNGDL-K-----CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--------WKQQFEFHSGPT 360 (563)
Q Consensus 295 dg~i~vw~~~~~~-~-----~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~ 360 (563)
+|.+++|+..... . ..+..|.+.|.+++|+|+|++|++|+.|++|+|||+.... ....+ .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 6777888765321 1 1244589999999999999999999999999999975421 01111 123456
Q ss_pred EEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 361 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 361 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
.++.|.. ...+++++.|++|++|++.+.+.+..+.+|.+.|.+++|+| ++.+|+||+.|++|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 7788864 46789999999999999999888999999999999999997 78999999999999999999988888776
Q ss_pred ccCCCEEEEEEccC-CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 438 EHSKEIYTIRWSPT-GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 438 ~~~~~i~~~~~~p~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
.+ ..+.++.|.+. +. +|++|+.||.|++||+++++ .+..+.+|..+|.++.|. ++.+|++|+.|++|
T Consensus 616 ~~-~~v~~v~~~~~~g~---------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 616 TK-ANICCVQFPSESGR---------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred cC-CCeEEEEEeCCCCC---------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 54 57899999653 32 78999999999999998765 467788999999999997 78899999999999
Q ss_pred EEEecCCC------eeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 516 HIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 516 ~iw~~~~~------~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+|||+..+ +.+.++.++. .+..++|+++|.+||+|+.|+.|.||+..
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 99999743 5677776644 57889999999999999999999999853
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.4e-28 Score=214.49 Aligned_cols=267 Identities=22% Similarity=0.367 Sum_probs=208.5
Q ss_pred CCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCC-CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 214 h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
-.+.|.+++|||. ..+|+.||-|++||+|+++.. ...+. ....+.++|.+++|+.||..+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEEe
Confidence 3477999999995 667779999999999999863 22111 11235688999999999999999
Q ss_pred EeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 292 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 292 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
|+.|+.+++||+.......+..|.++|.+++|-+... .|+|||+|++|+.||.+....+.++.... .+++++....
T Consensus 90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~~p- 167 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVLYP- 167 (347)
T ss_pred eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhccCc-
Confidence 9999999999998888888999999999999988766 79999999999999999877666555422 2333333322
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCc----ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCC--
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSK-- 441 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~----~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~-- 441 (563)
.++.+..+..|.++.+.+.. ..++.+.+ .++||+..++....|.|+-.|.+-|..++...+ -..|+-|..
T Consensus 168 m~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred eeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence 35566778889999996543 22233332 478999999998889999999999998877532 234444432
Q ss_pred -------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496 442 -------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 442 -------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg 509 (563)
.|.+|+|+|... .|++++.||+..+||-.....+.+...|..||++.+|+.+|.++|-+
T Consensus 246 ~~~~~VYaVNsi~FhP~hg---------tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHG---------TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeecccc---------eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 355678988542 68999999999999998888888888899999999999999998854
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=230.24 Aligned_cols=275 Identities=23% Similarity=0.361 Sum_probs=223.2
Q ss_pred ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496 271 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 348 (563)
.+|...|.|++=+|.- ..+++|+.||.|+|||+.. .+..++..|.+.|.+|++.. ..+++++.|++|+.|-+...
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-
Confidence 4456779999999876 7899999999999999865 45668999999999999987 67999999999999986553
Q ss_pred eeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEe
Q 008496 349 WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWN 426 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd 426 (563)
...++.+ ...+++++-. .+..|++|+. .|-+||..-..|+..+.-....|.++.|+|... +|++|..|+.|.+||
T Consensus 140 p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 140 PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 3333332 2233444432 3456787775 477899999999999988888899999999764 678888999999999
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCE
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
+++..+++.+.. .-.-..|+|+|.+. .+++|+.|.+++.+|++.- ..+....+|...|.++.|||.|+-
T Consensus 217 ~R~~~Pl~KVi~-~mRTN~IswnPeaf---------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 217 LRQASPLKKVIL-TMRTNTICWNPEAF---------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred cccCCccceeee-eccccceecCcccc---------ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 999988766542 23346799999542 5789999999999999864 457778899999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+++||.|.+|+||.+..+.--..|-. ...|+++.||.|.+++.+|+.++.|++|..
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999999988764444322 346899999999999999999999999964
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-28 Score=236.57 Aligned_cols=276 Identities=26% Similarity=0.489 Sum_probs=230.0
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008496 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298 (563)
Q Consensus 219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i 298 (563)
+-+.|+ ..+.||.|. ...+.+|+-.++.. ..+..+ ....|+++.|+++|.+|++|..+|.|
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence 347898 556667664 46799999765431 111111 14679999999999999999999999
Q ss_pred EEEEcCC-ceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-eeecccCeEEEecCC-CceEEEE
Q 008496 299 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSFATS 374 (563)
Q Consensus 299 ~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 374 (563)
.|||... +....+.+ |..-|-+++|+ +..+.+|+.|+.|..+|++..+.... +..|...+..+.|.. ...+|++
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence 9999753 34455666 99999999998 66899999999999999987765444 778888999999975 5678999
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe--CCCcEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 451 (563)
+.|+.+++|+.....|...+..|.+.|.+++|+|- ..+||+|+ .|++|++||..++..+..+. -...|.++.|++.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK 398 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence 99999999999888999999999999999999994 67888865 59999999999999887765 3467999999997
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
.. +++...|..++.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus 399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 64 345555777889999999999999999999999999999999999999999999999998663
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=219.63 Aligned_cols=285 Identities=24% Similarity=0.420 Sum_probs=226.4
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..|.||.+.|..++-.....++.|++.|.+++||.+.++.+.. .+.+|.+.|.++.|++.+.+
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------eecccccceeeEEeccccce
Confidence 4678999999999988777899999999999999998876421 12345688999999999999
Q ss_pred EEEEeCCCeEEEEEc------CC-----------------------------------ceeEeeccCCCCEEEEEeCCCC
Q 008496 289 LATGSYDGQARIWST------NG-----------------------------------DLKCTLSKHKGPIFSLKWNKKG 327 (563)
Q Consensus 289 l~sg~~dg~i~vw~~------~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~~ 327 (563)
+++++.|++..||.. .. ...+.+.+|.+.|.+..|...|
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999951 00 0234566777888888888788
Q ss_pred CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEEC
Q 008496 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 407 (563)
Q Consensus 328 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~ 407 (563)
+.++++++|.+..+||+++++. +..+.||..+.+-++-+
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~-----------------------------------------v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEV-----------------------------------------VNILTGHDSELTHCSTH 323 (481)
T ss_pred ceeeeeeccccceeeeeccCce-----------------------------------------eccccCcchhccccccC
Confidence 8888888888888888777653 45567888899889999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE
Q 008496 408 PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLY 485 (563)
Q Consensus 408 ~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~ 485 (563)
|..+++++.|.|.+.|+||++..- .+..|++|...|+++.|.-+. -+++||.|.+|++||+++.+ .+.
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd----------~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD----------RVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC----------ceeecCCCceEEEeeeccccCcce
Confidence 999999999999999999998543 367789999999999998765 37899999999999999765 455
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE----ecCC-CEEEEEEcCCC--CEEEEEECCCeEEE
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNG-GIFEVCWNKEG--DKIAACFANHTVCV 558 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~----~~~~-~i~~l~w~~~g--~~la~~~~~~~v~v 558 (563)
++. ...+++.++.+..+..||.--.+..|++||+...++.+.. .++. -|++.+|..+- .-|.+|+-|..+.=
T Consensus 394 TIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 394 TIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred eee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence 555 4678999999999999999888899999999765443221 1222 37889997653 45666667778877
Q ss_pred EEee
Q 008496 559 LDFR 562 (563)
Q Consensus 559 ~~~~ 562 (563)
|++.
T Consensus 473 W~in 476 (481)
T KOG0300|consen 473 WKIN 476 (481)
T ss_pred eEec
Confidence 7763
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=7.8e-28 Score=235.79 Aligned_cols=279 Identities=22% Similarity=0.384 Sum_probs=225.6
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEE-EEEC-CCC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWN-GEG 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s-~~g 286 (563)
..+.||...|.+|++.+. ..++++|.||++++|+-......+. ..+. .+.+-|.+ +++- .++
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~--------~~~~-------~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET--------HAFE-------GPKGFIANSICYAESDK 71 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc--------eecc-------cCcceeeccceeccccC
Confidence 578999999999987654 4788999999999998543222110 0000 11122322 5555 355
Q ss_pred CEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 287 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
-.+++|+.|+.+.+|...+ ....++.+|+..|.++.-..++. ++|||+|.++++|- .+++...+..|..++..+..
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence 6799999999999999765 56778999999999999777776 99999999999994 45666678999999998888
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEE
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 445 (563)
.+...|++++.|.+|++|.- ++.+++|.||+.-|+.+++-+++. |+||+.||.|++|++ ++.++..+.+|+.-+++
T Consensus 149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 77779999999999999986 567889999999999999987655 579999999999999 77788899999999999
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
+...+++. .++|++.|++++||+.. .+...+.-....|+++.+-++|. |++|+.||.|+||....
T Consensus 225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99555443 78999999999999876 77777775555899999988887 56788899999998763
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3e-27 Score=211.45 Aligned_cols=291 Identities=23% Similarity=0.349 Sum_probs=212.4
Q ss_pred CCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (563)
Q Consensus 204 ~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 283 (563)
.+-.+.+|+||.+.|++++|+.||+.|||++.|++||||++.+-.... |...+.+.....-|.+.|+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence 334456899999999999999999999999999999999987532110 1111112223457899999
Q ss_pred CCCCEEEEEeCC-CeEEEEEcC----CceeE---------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 284 GEGTLLATGSYD-GQARIWSTN----GDLKC---------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 284 ~~g~~l~sg~~d-g~i~vw~~~----~~~~~---------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
||.+-++..... ..+++|... |.... .-..|.-+|..+-...++.+|++++.|..|.+|+++ |+.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 998877766554 478999743 32211 123467788888888889999999999999999998 777
Q ss_pred eEEeeecccCeEEEecCCCceE-EEEeCCCeEEEEEcC--------CCcceeeecCCCcceeEEEECCCCCEEEEEeCCC
Q 008496 350 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg 420 (563)
++.+.............++.+| ++++----|++|.+- +-+.+..+.||...|..++|++++..++|.|.||
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 7777665555555555555555 455555567788652 1234567899999999999999999999999999
Q ss_pred cEEEEeCCCC-------ceeeee----cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-c
Q 008496 421 TAKIWNMKQD-------KYVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N 488 (563)
Q Consensus 421 ~i~iwd~~~~-------~~~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~ 488 (563)
++||||.+-. +.+.+. .+..+.-..+..+|.|. .| ..+....++++..++|+..-++ .
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~l-A~s~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SL-AVSFGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EE-EeecCCceEEEEcccCccchhHHH
Confidence 9999997532 111111 11223334788888875 34 3455678999999998876665 4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.|...|.+|+|+|+|+++||++ |..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5889999999999999999988 66777765
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1e-28 Score=213.77 Aligned_cols=277 Identities=24% Similarity=0.407 Sum_probs=236.7
Q ss_pred ccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 271 NEKSKDVTTLDWNG---EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 271 ~~~~~~V~~l~~s~---~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
.+|+.+|..++||| +|-+|++++.||.-.+-+- .|..+.+|.+|++.|++...+.+....++++.|=+.++||.-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 35678899999985 8999999999998777664 3678889999999999999999999999999999999999999
Q ss_pred CceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
+..+..|+. .--+..+.|. +...+++++.+..++++++... .|...+.+|.+.|..+-|....+.|++.++|++||+
T Consensus 91 gdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 91 GDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred hhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 887766643 3345556665 4467789999999999998654 477889999999999999988899999999999999
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 504 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~ 504 (563)
||.+++..++++.. ..+++++..+++|. +++-..-+.|++||..+-.++...+. .-.|.+.+++|+..
T Consensus 170 WD~rTgt~v~sL~~-~s~VtSlEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 170 WDHRTGTEVQSLEF-NSPVTSLEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE 237 (334)
T ss_pred EEeccCcEEEEEec-CCCCcceeeccCCC----------EEEEecCceeEEeccccccceeeccC-ccccccccccCCCc
Confidence 99999999988763 45789999999885 44556678999999998887776653 34689999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEE-ec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~-~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++++|+.|..++.||..+|.-+..+ .+ .++|.++.|+|||...|+|+.||+|++|-
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999999888776 33 57899999999999999999999999994
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.1e-29 Score=226.48 Aligned_cols=285 Identities=20% Similarity=0.364 Sum_probs=228.4
Q ss_pred eeEecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 208 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
+.-|.||.++|.|++=+|.. ..+|||+.||.|+|||+..-.+. ..+ ..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------~~f----~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------RTF----KAHEGLVRGICVTQ-- 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-------------hee----ecccCceeeEEecc--
Confidence 44579999999999999986 89999999999999998753321 111 23456788888876
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
..+++++.|.+|+.|..++....++.+ .+.+.++.-+..+..++||+. .|-|||.+....++++......+.++.+.
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred cceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence 678999999999999999876666643 356777877777788888875 68999998888888888777777777765
Q ss_pred C--CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCCE
Q 008496 367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEI 443 (563)
Q Consensus 367 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i 443 (563)
+ ...+++|+.|+.|.+||+++..|++... -.-.-+.|+|+|.+--+++|++|..+..||++.- .++...++|...|
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 4 3567788899999999999999876553 2335678999998878899999999999999754 4567778999999
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
.++.|+|.|. -+++||.|.+||||.+..+...-.. +.--..|.++.||-|.+|+++||.|+.|++|....
T Consensus 276 ~dVdfsptG~---------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 276 MDVDFSPTGQ---------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEeccCCCcc---------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9999999997 4899999999999999866432211 01123599999999999999999999999998764
Q ss_pred Ce
Q 008496 523 GK 524 (563)
Q Consensus 523 ~~ 524 (563)
.+
T Consensus 347 se 348 (433)
T KOG0268|consen 347 SE 348 (433)
T ss_pred hh
Confidence 43
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=220.59 Aligned_cols=282 Identities=22% Similarity=0.326 Sum_probs=230.0
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
...+.++...|....++|||.|..+.++|...+... ..+ .++...|+.+.++++...+++++.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-------------~~~----~Gh~kki~~v~~~~~~~~v~~aSa 281 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-------------ATL----KGHTKKITSVKFHKDLDTVITASA 281 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-------------hhc----cCcceEEEEEEeccchhheeecCC
Confidence 356788888888789999999999999997654321 122 245678999999999999999999
Q ss_pred CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 295 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 295 dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
|..|+||.... ........|..+|+.+..+|.|.||++++.|+++.+.|++++........
T Consensus 282 d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------ 343 (506)
T KOG0289|consen 282 DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------ 343 (506)
T ss_pred cceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------
Confidence 99999999653 44556788999999999999999999999999999999988764332110
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 453 (563)
.+..-.+++++|+|||-+|++|+.|+.++|||+++...+..|.+|.++|.+++|+.+|
T Consensus 344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG- 401 (506)
T KOG0289|consen 344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG- 401 (506)
T ss_pred ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-
Confidence 0112257899999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC--CCeeEEEEe
Q 008496 454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYT 530 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~--~~~~~~~~~ 530 (563)
++|+++..|+.|++||++..+...++.- ...+|.++.|.+.|++|+.++.|=+|++++-. .+..+..+.
T Consensus 402 --------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 402 --------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred --------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 4899999999999999998776666543 23479999999999999999888666666632 455666665
Q ss_pred cCC-CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 531 GNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 531 ~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+. ..+.+.|.....+|+.|+.+..+.|+-+
T Consensus 474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeecccceEEeeccchhheEEeec
Confidence 554 4567889889999999999988777654
No 90
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.7e-27 Score=239.72 Aligned_cols=227 Identities=18% Similarity=0.346 Sum_probs=181.8
Q ss_pred EeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEEecCCC
Q 008496 292 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN 368 (563)
Q Consensus 292 g~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 368 (563)
|+.++.+++|+... .....+.+|.++|.+++|+|+ +++|++|+.|++|+|||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 66788999998653 345678899999999999997 78999999999999999975421 000
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. |...|.+++
T Consensus 114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 01234457789999999999999875 5799999999999999988776665 567899999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEE
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW 518 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-----l~~spdg~~lasgs~dg----~v~iw 518 (563)
|+|+|. +|++++.|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|++++.|+ +|+||
T Consensus 175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 999886 7888999999999999999999999999876543 34578999999988774 79999
Q ss_pred ecCC-CeeEEEEecCC--CEEEEEEcC-CCCEEEEEECCCeEEEEEee
Q 008496 519 SLKE-GKIVKTYTGNG--GIFEVCWNK-EGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 519 ~~~~-~~~~~~~~~~~--~i~~l~w~~-~g~~la~~~~~~~v~v~~~~ 562 (563)
|+++ ++.+....... ++.-..|++ +|..+++|..|++|++|+++
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 9985 55666554332 333335555 48899999999999999985
No 91
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=237.75 Aligned_cols=245 Identities=20% Similarity=0.325 Sum_probs=183.2
Q ss_pred EeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCc----
Q 008496 232 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD---- 306 (563)
Q Consensus 232 tgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~---- 306 (563)
.||.++.+++|+..... .+..+ ..|...|++++|+|+ +.+|++|+.||.|+||+....
T Consensus 49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 36678899999864311 11122 235678999999996 799999999999999997521
Q ss_pred -----eeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeE
Q 008496 307 -----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 380 (563)
Q Consensus 307 -----~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 380 (563)
....+.+|...|.+++|+|++..+ ++++.|++|++||++++.....
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~---------------------------- 163 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ---------------------------- 163 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE----------------------------
Confidence 234678899999999999998765 6899999999999987643211
Q ss_pred EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE-----ccCCCCC
Q 008496 381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGT 455 (563)
Q Consensus 381 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~-----~p~~~~~ 455 (563)
+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|.+.+.+..+ ++++.
T Consensus 164 -------------i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-- 227 (568)
T PTZ00420 164 -------------IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-- 227 (568)
T ss_pred -------------Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence 11 3346889999999999999999999999999999999999999877654432 34432
Q ss_pred CCCCCcEEEEEEeCCC----eEEEEeCCC-CeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee--E
Q 008496 456 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V 526 (563)
Q Consensus 456 ~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~--~ 526 (563)
+|++++.|+ .|+|||+++ ++++..+. .+.+.+.....+++|.++++|+.|+.|++|++..+.+ +
T Consensus 228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 567766664 799999995 55555443 3334444455566799999999999999999987753 3
Q ss_pred EEEecCCCEEEEEEcCCC
Q 008496 527 KTYTGNGGIFEVCWNKEG 544 (563)
Q Consensus 527 ~~~~~~~~i~~l~w~~~g 544 (563)
..+....+...++|.|+-
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 334444556788888863
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.2e-27 Score=246.44 Aligned_cols=282 Identities=26% Similarity=0.394 Sum_probs=212.4
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCC--CCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
.+..+..|.+.|+|+.|+|||++||+||.|+.|.||..... ....+.+.+..++...+. ......|..+|..++|+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCC
Confidence 45567889999999999999999999999999999998741 111111122222221111 112234678999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
++.+|++++.|+.|.||+.. .....++.+|.+.|-++.|.|-|+||++-+.|++|++|+.......+.+..+-
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf------ 213 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF------ 213 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch------
Confidence 99999999999999999964 46677899999999999999999999999999999999865433333221110
Q ss_pred ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC----CCcEEEEeCCCCceeeeeccc
Q 008496 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~ 439 (563)
.. ..-...+.-+.|+|||++|++... -.++.|.+-.+.+.-..|.+|
T Consensus 214 ----------------------------~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH 264 (942)
T KOG0973|consen 214 ----------------------------EE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH 264 (942)
T ss_pred ----------------------------hh-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence 00 001224667999999999998643 336788877777777889999
Q ss_pred CCCEEEEEEccCCCCCC-------CCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEe
Q 008496 440 SKEIYTIRWSPTGSGTN-------NPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~-------~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~spdg~~lasgs 510 (563)
.+++.+++|+|.--... .++ ..+++|+||.|++|.||.....+++..... ...+|..++|||||..|..+|
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS 344 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS 344 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence 99999999998421111 121 224899999999999999987787765432 345799999999999999999
Q ss_pred CCCcEEEEecCCCe
Q 008496 511 LDKSMHIWSLKEGK 524 (563)
Q Consensus 511 ~dg~v~iw~~~~~~ 524 (563)
.||+|.+..+....
T Consensus 345 ~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 345 LDGTVALIHFEEKE 358 (942)
T ss_pred cCCeEEEEEcchHH
Confidence 99999999987644
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.1e-26 Score=205.76 Aligned_cols=266 Identities=21% Similarity=0.356 Sum_probs=210.3
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
...|..+.|+|.+..|+.++.||++++|++...... .. -.+..++++++|.++ ..+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------~~--------~~~~~plL~c~F~d~-~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------LK--------FKHGAPLLDCAFADE-STIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------hh--------eecCCceeeeeccCC-ceEEEecc
Confidence 467899999999988888899999999998753210 01 123578999999874 67899999
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 374 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (563)
||.|+++|.+......+..|..+|.++.+++....+++||+|++|++||.+.......+.
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------------- 133 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------------------- 133 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence 999999999998888899999999999999988999999999999999998632211110
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec--ccCCCEEEEEEccCC
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTG 452 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~ 452 (563)
....|.|+.. .+..|+.|+.|..+.+||+++.......+ ...-.+.+++.-|++
T Consensus 134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 1124555554 46778899999999999998765443222 123357888888865
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 453 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~---------~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.+ .+.+|-||.|.+=.++.. +..+.++.|.. ||++|+|+|--..||||+.||.|.+||
T Consensus 190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 42 578899999888666554 45567777753 799999999999999999999999999
Q ss_pred cCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEEC
Q 008496 520 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 520 ~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~ 552 (563)
+.+.+.++.+... ..|..++|+.+|..||++++
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999888887664 56999999999999999864
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-26 Score=217.61 Aligned_cols=275 Identities=23% Similarity=0.342 Sum_probs=222.4
Q ss_pred CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
+.|.+++|||... -+|+.++ -.+.||+..+... .+.+ ..-.+.|.+++|-.||++|+.|..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~-------------~k~~----srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV-------------RKTF----SRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhh-------------hhhH----HhhccceeEEEeecCCeEEEccCC
Confidence 5799999999753 3444332 3577777543211 0100 111356999999999999999999
Q ss_pred CCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--Cce
Q 008496 295 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVS 370 (563)
Q Consensus 295 dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 370 (563)
.|.|+|+|...+ ....+..|+.||..+.|+|.++ .|++|+.|+.+++||+.+...+..+..|...+.+.+|.+ +..
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 999999995542 4557889999999999999765 567888889999999999887557888999999998865 456
Q ss_pred EEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeecccCCCEEEEEE
Q 008496 371 FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRW 448 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~ 448 (563)
+++++-||.|++||++.. .++..+ .|..+|..+.+-|.|.+||+++.. .++|||+.++.. +..+..|.+.|+|+++
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence 899999999999999877 555555 488899999999999999999865 799999986554 4445559999999999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
..++. .|+|||-|+.|++||+.+-+.++.+. -.+||.+++.|||++.++.|-.+|.+.+=+.
T Consensus 247 ~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 247 ASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 87664 68999999999999999889998887 5789999999999999999999998877643
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-26 Score=227.08 Aligned_cols=272 Identities=22% Similarity=0.353 Sum_probs=231.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEE-EEeCC-CCCEEEEeeCCCcEEEEECC
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNK-KGDYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~-l~~~~-~~~~l~s~s~D~~v~iwd~~ 345 (563)
.+|..+|..++..+. ..++++|.||++++|+..++.. ..+.+|.+-|.. +++-+ ++-.+++|+.|.++.+|.+.
T Consensus 11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 346678888886654 4789999999999999765432 346778887766 78776 33459999999999999999
Q ss_pred CCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
.......+..|...+.++.-..+..++++|-|.++++|..++ ....+.||+..|.+++.-|.+ .++|||.|.+||+|
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence 999999999999999999877777799999999999998865 345589999999999999988 67899999999999
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
.- ++.+.+|.+|...|..++.-|++. ++|++.||.|++|++ +|.++.++.+|..-|++++..+++..
T Consensus 167 k~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 167 KG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 75 677889999999999999988753 789999999999999 79999999999999999999899999
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+++++.|++++||+.. .+++.+...+ .|++++.=+.|+. ++|++||.|+||-.+
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 9999999999999976 7777776654 6888887777866 555589999999654
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-26 Score=205.25 Aligned_cols=259 Identities=21% Similarity=0.346 Sum_probs=203.7
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
...+..|.++|+++|. ++.++||||.|-+|+|||+......+ ..-.|.+.|+++.|.+.-.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPLS 96 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCcc
Confidence 3456789999999998 58999999999999999987543211 1112467899999999765
Q ss_pred --EEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 288 --LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 288 --~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
.|++|+.||.|.+|+... .+..++..|++.|+.++.+|.|+.-++.+.|+.++.||+-+++...
T Consensus 97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~------------- 163 (362)
T KOG0294|consen 97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF------------- 163 (362)
T ss_pred hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-------------
Confidence 899999999999999865 5667899999999999999999999999999999999997764221
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 444 (563)
++.+++ ..+.+.|+|.|.+++.++.+ .|-||.+.+......+.. ...+.
T Consensus 164 -----------------v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 164 -----------------VLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRIL 212 (362)
T ss_pred -----------------eeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccce
Confidence 122211 12238999999988888776 588998876655443332 24566
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCC
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~--spdg~~lasgs~dg~v~iw~~~~ 522 (563)
++.|...+ .|++|..|+.|++||...+.+...+.+|...|-++.+ .|++.||+|+|.||.|+|||++.
T Consensus 213 ~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 213 CATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 77665433 6899999999999999999999999999999999984 68899999999999999999986
Q ss_pred C-----eeEEEEecCCCEEEEE
Q 008496 523 G-----KIVKTYTGNGGIFEVC 539 (563)
Q Consensus 523 ~-----~~~~~~~~~~~i~~l~ 539 (563)
. +++..+..+..++++.
T Consensus 283 ~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 283 ETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred cccCCcceeEEeecCCccceee
Confidence 5 4555555555555543
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=215.28 Aligned_cols=235 Identities=25% Similarity=0.382 Sum_probs=203.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..++++...|....+++|+.|..+.++|.. ++...++.+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 458888888887899999999999999975 567778999999999999999999999999999999998654321
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
......|..+|+.+..+|.|.+|+++|+|++.-+.|++++..+
T Consensus 296 -------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 296 -------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred -------------------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 1234568899999999999999999999999999999999877
Q ss_pred eeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 434 HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 434 ~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
..... ..-.+++.+|+|+| +++.+|..||.|+|||+..+..+..+.+|.++|.+|+|+.+|.|||++..
T Consensus 339 t~vs~~~s~v~~ts~~fHpDg---------Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDG---------LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEEeeccccceeEEeeEcCCc---------eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 55443 22358999999998 48999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 512 DKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 512 dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
|+.|++||++.-+..+++.-. .++.+++|+..|++|++++.+ +.||-+
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~ 459 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYIC 459 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce--eEEEEE
Confidence 999999999988888887653 359999999999999999655 555543
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=230.35 Aligned_cols=287 Identities=21% Similarity=0.378 Sum_probs=223.7
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008496 220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298 (563)
Q Consensus 220 ~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i 298 (563)
++..++ .+++|+|||.||.|++|++....... ... .......|+..|..+....+|+.|++++.|-+|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~-----~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------STP-----YIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCc------ccc-----hhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 455555 46789999999999999975422100 000 011223456778888888899999999999999
Q ss_pred EEEEcCCc---eeEeeccCCCCEEEEEe-CCCCCEEEEeeCCCcEEEEECCCCce--eEEeeecccCeEEEecCCCceEE
Q 008496 299 RIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 299 ~vw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
++|+.... ...++..|+..|.+|+. -++...++||+-|+.|++||++++.. ...+.
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------------ 159 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN------------------ 159 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc------------------
Confidence 99997644 34578889999999999 78888999999999999999998732 11111
Q ss_pred EEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 451 (563)
.+.+ ..+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|...|..+..+++
T Consensus 160 ------~~t~---------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 160 ------NVTV---------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred ------cccc---------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence 1111 1122 78888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEEEEe
Q 008496 452 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYT 530 (563)
Q Consensus 452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~~~~ 530 (563)
|. .++|+|.||+|++||+...+|++++..|...|+++.-+|+=..+.+|+.||.|..=|+++ .+....++
T Consensus 225 Gt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 225 GT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred CC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence 86 688999999999999999999999999999999999999999999999999999999988 44555555
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 531 GNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
....|..+..+...+-+-++..|+.|.=|
T Consensus 296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CCCchhhhhhccccCCceeeeccccceec
Confidence 55555554444433333444445544444
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8e-27 Score=207.95 Aligned_cols=211 Identities=27% Similarity=0.512 Sum_probs=178.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-------------------ceeEeeccCCCCEEEEEeCCCCCEEEEe
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTG 333 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 333 (563)
|..++.+.+||+||.++++|+.|..|+|.|++. .++.++-.|..+|..+.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 456789999999999999999999999999641 2345677899999999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 334 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
+.|++|+++|.......+.+ +.|. ....|.++.|+|.|.+|
T Consensus 191 srD~tvKlFDfsK~saKrA~--------------------------------------K~~q-d~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAF--------------------------------------KVFQ-DTEPVRSISFHPSGEFL 231 (430)
T ss_pred cCCCeEEEEecccHHHHHHH--------------------------------------HHhh-ccceeeeEeecCCCceE
Confidence 99999999997643322211 1111 23468899999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeee---cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-C
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G 489 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~ 489 (563)
+.|.+-.++|+||+++-++...- ..|.+.|+++.+++.+. +.++||.||.|+|||--+++|+.++. .
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~---------lYvTaSkDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS---------LYVTASKDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc---------EEEEeccCCcEEeeccccHHHHHHHHhh
Confidence 99999999999999988765432 36889999999999886 77899999999999998899988874 4
Q ss_pred CC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496 490 HR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 490 h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~ 531 (563)
|. ..|.++.|+.+|+||.+.|.|..|++|.+.+|++++.|.+
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 54 4699999999999999999999999999999999999865
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-25 Score=200.58 Aligned_cols=242 Identities=20% Similarity=0.298 Sum_probs=198.8
Q ss_pred eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEe--CCCeEEEEEcC
Q 008496 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS--TDNMIYVCKIG 386 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~d~~i~~~~~~ 386 (563)
.+....+.|.++.|+++|.++++++.|.+++|||..+++.++++..+.-.+-.+.+.. ...++.++ .|.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 4445678899999999999999999999999999999999988877765555555543 23333344 38899999999
Q ss_pred CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 387 ~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s 466 (563)
.++-++.|.||...|++++.+|-+..++|+|.|++||+||++..++..-+..... ..++|.|.| +++|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~G---------LifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEG---------LIFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCC---------cEEEE
Confidence 9999999999999999999999999999999999999999998887766544333 346788887 37788
Q ss_pred EeCCCeEEEEeCCCC--eE--EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC----EEE
Q 008496 467 ASFDSTVKLWDVELG--KL--LYSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE 537 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~--~~--~~~~~-~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~----i~~ 537 (563)
+.....|+|||++.- .+ ...+. +.....+.|.|||||++|..++..+.+++.|.-+|.++.++..... ..+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 877779999999853 12 22333 3456689999999999999999999999999999999988875322 247
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEee
Q 008496 538 VCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 538 l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+|.|||+.+..|+.||++.||+++
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcC
Confidence 8999999999999999999999974
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.3e-26 Score=214.75 Aligned_cols=257 Identities=25% Similarity=0.515 Sum_probs=201.7
Q ss_pred ecCCCCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC-CCE
Q 008496 211 LEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTL 288 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~ 288 (563)
.-.|.++|+.+..-|+. .++||++..+.+.|||.................+. +.++ .+.=+.|+|++. .-.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~---L~gH----~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLR---LKGH----EKEGYGLSWNRQQEGT 192 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceE---EEee----ccccccccccccccee
Confidence 34699999999999975 68888999999999998764332221111000111 1222 233566999984 457
Q ss_pred EEEEeCCCeEEEEEcCCc--------eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 289 LATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
|++|+.|+.|++||.+.. .+..+.+|...|..++|++.. ..|.+++.|+.+.|||++++.
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------- 261 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------- 261 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------
Confidence 889999999999997632 345688999999999999966 457789999999999998631
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCc-eeeeec
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDK-YVHDLR 437 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~-~~~~~~ 437 (563)
.++.....+|.++|+|++|+|- +.+|||||.|++|.+||+++-+ +++++.
T Consensus 262 ----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 262 ----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred ----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 2233455689999999999995 5678999999999999998754 578999
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEecCCCCCEEEEEEcCCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+|...|.++.|+|... .+|||++.|+.+.+||+.. .++++.-.||...|..++|+|+.
T Consensus 314 ~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 9999999999999764 4899999999999999853 13467778999999999999998
Q ss_pred CE-EEEEeCCCcEEEEecC
Q 008496 504 EY-LASGSLDKSMHIWSLK 521 (563)
Q Consensus 504 ~~-lasgs~dg~v~iw~~~ 521 (563)
.+ |++.+.|+.+.||.+.
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 76 5789999999999975
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=210.45 Aligned_cols=238 Identities=22% Similarity=0.428 Sum_probs=202.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeE--------eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
.+.+-|..|||||++|++|+.||.|.+|+. .|++.. .+--|..+|.|+.|+.+...|++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 456889999999999999999999999995 454432 23347889999999999999999999999999999
Q ss_pred CCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
++|.+++.|. ++|...|+|+.|+.|+..+.++|.|.++||
T Consensus 293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence 9887665442 268889999999999999999999999999
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEEcCC
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 502 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~spd 502 (563)
--+++++++..|++|+.-|+...|.++|. .++++|.||+|++|+..+..|+.+++. ...+|+++-.-|-
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 99999999999999999999999999986 688999999999999999999887753 4567888877765
Q ss_pred -CCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 503 -GEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 503 -g~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
-..++.+...++|.|-++. |.+++++.. .+.....+.+|.|.++.+...|+.+.-+++
T Consensus 404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 4678889999999999974 788998864 344567789999999888888887655543
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=200.58 Aligned_cols=253 Identities=25% Similarity=0.407 Sum_probs=194.9
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL 288 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~ 288 (563)
-.+|.+.|..+...--|++|||++.|++|||+.+.+... . ..+.. ..+|.++|.-++|-. -|.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------s--~ll~~----L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------S--KLLAE----LTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------c--eeeeE----ecCCCCCeeEEeecccccCcE
Confidence 457889999988888899999999999999999865431 0 11122 235678999999977 7999
Q ss_pred EEEEeCCCeEEEEEcCCc---eeEeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEE
Q 008496 289 LATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLD 362 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~ 362 (563)
||++++||.|.||...+. .......|.+.|.+++|.|.+ -.|+++++||.|.|.+.+.. .+..
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t----------- 141 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT----------- 141 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-----------
Confidence 999999999999997654 234567899999999998864 56889999999999876543 1110
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC---C-----------CEEEEEeCCCcEEEEeCC
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~-----------~~las~s~dg~i~iwd~~ 428 (563)
-+....|.-.|++++|.|- | +.|+||+.|..|+||+..
T Consensus 142 ----------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 142 ----------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred ----------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 1123346666777777664 3 569999999999999998
Q ss_pred CCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCC
Q 008496 429 QDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 429 ~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg 503 (563)
.+.. -+.|.+|...+..++|.|.-.. ....|||+|.||+|.||..+.... ...+.....+++.++||+.|
T Consensus 194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 194 SDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred CcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc
Confidence 7643 3458899999999999997431 234799999999999998763211 12233345689999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q 008496 504 EYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~ 521 (563)
..|+.++.|+.|.+|.-.
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 999999999999999753
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.1e-26 Score=200.87 Aligned_cols=266 Identities=21% Similarity=0.384 Sum_probs=211.4
Q ss_pred cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCC--cee-EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496 272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 272 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
+....|.+|+||| ...+++.|+.||+||+|+++. ... .....|.+||.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3456799999999 667777999999999999764 222 345679999999999999999999999999999999999
Q ss_pred ceeEEeeecccCeEEEecCCC---ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
+ ..++..|.+++..+.|... ..+++++-|.+|+.||.+...|+.++.- ...+-+++. -..+++.+..+..|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEE
Confidence 5 5568899999999999754 3689999999999999999888877642 234444443 3567888888999999
Q ss_pred EeCCCCceeeeeccc----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEecCCCC------
Q 008496 425 WNMKQDKYVHDLREH----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE------ 492 (563)
Q Consensus 425 wd~~~~~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~------ 492 (563)
|++..+.. .++.+ .-.+.+|+..++.. ..|.||-.|.+-|..+..+ +.-++++.|+.
T Consensus 181 ynL~n~~t--e~k~~~SpLk~Q~R~va~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 181 YNLENPPT--EFKRIESPLKWQTRCVACFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEcCCCcc--hhhhhcCcccceeeEEEEEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 99976532 22222 23467777766654 2478999999999998876 55567777763
Q ss_pred ---CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496 493 ---PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 493 ---~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~ 552 (563)
+|++|+|+|.-..|+|+|.||+..+||-.....+++++. ...|...+|+.+|+++|.+.+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 477899999999999999999999999887777777654 567999999999999998743
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-26 Score=218.03 Aligned_cols=284 Identities=19% Similarity=0.376 Sum_probs=233.5
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
.|-.-|++++.|...++++||| .|.|+|||+...... .|+..+.. .....-|.++...|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-----~PvsqLdc-------l~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-----SPVSQLDC-------LNRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-----Cccccccc-------cCcccceeeeEecCCCceEEec
Confidence 5777789999999999999986 588999999653211 11111110 0123568899999999999999
Q ss_pred eCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc
Q 008496 293 SYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 293 ~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
++-.++.|||+.. .++..+....-..++|+.+||.+..++|..||.|.|||+.+..
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--------------------- 542 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------------------- 542 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---------------------
Confidence 9999999999754 3444555444567889999999999999999999999997653
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
.++.|.||...+.||.+++||..|-||+-|.++|.||+++++.+... .....|.++.++
T Consensus 543 --------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~c 601 (705)
T KOG0639|consen 543 --------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYC 601 (705)
T ss_pred --------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccC
Confidence 24567899999999999999999999999999999999988765432 235679999999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
|.+. +|+.|-.++.+.|-... +...+.+.-|...|.++.|++.|+|+++.+.|+.+..|...-|.-+...
T Consensus 602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 9886 78999999999888765 4456777789999999999999999999999999999999999887777
Q ss_pred ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 530 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 530 ~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+....|.+...+.|.+++++|++++...||.+
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 77888999999999999999999988888865
No 106
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.4e-25 Score=219.88 Aligned_cols=345 Identities=24% Similarity=0.383 Sum_probs=253.6
Q ss_pred ceeEecCCCCceEEEEECCCCC---EEEEeeCCCcEEEEecCCCCCcC---------CCCCCCceEEEEEee------ec
Q 008496 207 DVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKHV------KG 268 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~---~latgs~D~~i~iW~~~~~~~~~---------~~~~~~~~~~~~~~~------~~ 268 (563)
.+..|.||.+.|..++|+..+. +|||+|.|.+||||.+.-..... .....+.. ..+.+. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFEA 261 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehhh
Confidence 4567899999999999998643 89999999999999975432111 00011110 111111 12
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc---eeE-----eeccCCCCEEEEEeCCCCCEEEEeeCCCcEE
Q 008496 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (563)
Q Consensus 269 ~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~ 340 (563)
...+|...|.++.|+|.+..|++++.|.++.+|..+.. -.. ...+..+.-++..|+|+++.+++-+.-|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 23367889999999999999999999999999987643 222 2334455689999999999999999999999
Q ss_pred EEEC-CCCceeE--EeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcc----eeeecCCCcceeEEEECCCCCE
Q 008496 341 VWDV-KTEEWKQ--QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL 412 (563)
Q Consensus 341 iwd~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~ 412 (563)
+|-. ....|.+ .+..|...+.+++|.+.. .+++.+.|.+-+++-....+. +..-.-|...++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9972 2233333 456788899999998654 557889999988876542221 1112347778999999875566
Q ss_pred EEEEeCCCcEEEEeCCC-------------------------------------------Cc------------------
Q 008496 413 LASCSDDVTAKIWNMKQ-------------------------------------------DK------------------ 431 (563)
Q Consensus 413 las~s~dg~i~iwd~~~-------------------------------------------~~------------------ 431 (563)
+++|.+...+|+|+... +.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 78999999999997510 00
Q ss_pred ---------------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEEecCCC
Q 008496 432 ---------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 432 ---------------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~h~ 491 (563)
.++.+.+|.-.|++++.+|++. ++||+... ..|++|+..+-..+..+.+|.
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 0112345667788888888775 77777653 359999999988888999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE-EE---EecCCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KT---YTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~-~~---~~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
-.|+.++|||||+||++.|.|+++.+|........ .. .+.+.. |.+.+|+|++.++|+|+.|++|.||-.
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 99999999999999999999999999998543211 11 223333 689999999999999999999999964
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8e-27 Score=201.54 Aligned_cols=245 Identities=26% Similarity=0.515 Sum_probs=192.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC--C--ceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN--G--DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~--~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~ 348 (563)
.-|..+...--|+.|+|++.|++|+|+... + .+..+|.+|.+||+.+.|.. -|..|++++.||.|.||.-.++.
T Consensus 12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence 345555555568999999999999999864 2 46678999999999999965 78999999999999999877665
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEe
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWN 426 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd 426 (563)
+.+. ..+..|...|++++|-|. |-+||+++.||.|.|.+
T Consensus 92 w~k~---------------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 92 WTKA---------------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred hhhh---------------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 4332 234568999999999885 56789999999999998
Q ss_pred CCCC-ce--eeeecccCCCEEEEEEccCCCC---CC-CC-CCcEEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCEEE
Q 008496 427 MKQD-KY--VHDLREHSKEIYTIRWSPTGSG---TN-NP-NQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYS 496 (563)
Q Consensus 427 ~~~~-~~--~~~~~~~~~~i~~~~~~p~~~~---~~-~~-~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~ 496 (563)
.+.. .. ......|.-.+.+++|.|.... .. .+ .....|+||+.|..|+||+..+++ .-.++.+|.+.|..
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 8765 21 2234579999999999997321 11 11 112358999999999999988763 23458899999999
Q ss_pred EEEcCCC----CEEEEEeCCCcEEEEecCCC------eeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 497 LAFSPTG----EYLASGSLDKSMHIWSLKEG------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 497 l~~spdg----~~lasgs~dg~v~iw~~~~~------~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++|.|.- .+||++|.||+|.||..... ++++.| ...++.++||..|+.||+++.|..|.+|.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999974 57999999999999987621 234432 45689999999999999999999999884
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=218.90 Aligned_cols=329 Identities=21% Similarity=0.356 Sum_probs=248.1
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCC---CCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ---NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
.-+|.|+|....|...-.|..++|||+.+-...+... .+...++...... .+.+...--| -|.+ .|+|++.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--~nv~~~~~ac---lp~~-cF~TCSs 400 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--CNVHSPTAAC---LPRG-CFTTCSS 400 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--ccccCccccc---CCcc-ceeEecC
Confidence 4578999999999888899999999997643221110 0000111111000 0111111111 1223 4889999
Q ss_pred CCeEEEEEcCC----ceeE--ee--------------------------------ccCCCCEEEEEeCCCCCEEEEeeCC
Q 008496 295 DGQARIWSTNG----DLKC--TL--------------------------------SKHKGPIFSLKWNKKGDYLLTGSCD 336 (563)
Q Consensus 295 dg~i~vw~~~~----~~~~--~~--------------------------------~~h~~~V~~l~~~~~~~~l~s~s~D 336 (563)
|++||+|++.+ .... .+ ......+.+++.+|+|++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 99999999765 2100 00 0123468899999999999999999
Q ss_pred CcEEEEECCCCceeEEeeecccCeEEEecCC----CceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCC-
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG- 410 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~- 410 (563)
|+++||++...+....++.|...++++.+.. ...+++++.|..|+++|+..+ .+++++.+|...|+++.|--.|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 9999999999888888999999999998864 356789999999999999765 4788999999999999998777
Q ss_pred -CEEEEEeCCCcEEEEeCCCC-ceeeeecc-----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496 411 -SLLASCSDDVTAKIWNMKQD-KYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483 (563)
Q Consensus 411 -~~las~s~dg~i~iwd~~~~-~~~~~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 483 (563)
...++|+.|..|. |+.... .....+.. ....++.++..|... ++++++.|..|+|||+.+|+.
T Consensus 561 n~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 561 NRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred ceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceEEEeccccce
Confidence 5678999998765 343321 11111111 234678888877654 789999999999999999999
Q ss_pred EEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCC-CEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 484 LYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 484 ~~~~~~---h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~-~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
...+++ |.+..-.+...|.|-|||+...|+++.++|.-+|+++.+..+++ .|+.+.|.+|=++|...++||.|.||
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 999875 55667789999999999999999999999999999998888765 47899999999999999999999999
Q ss_pred Eee
Q 008496 560 DFR 562 (563)
Q Consensus 560 ~~~ 562 (563)
-+-
T Consensus 711 ~lp 713 (1080)
T KOG1408|consen 711 KLP 713 (1080)
T ss_pred ECc
Confidence 763
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=230.04 Aligned_cols=288 Identities=23% Similarity=0.392 Sum_probs=221.6
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-CCCEEEEEeCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~d 295 (563)
...+++.+++-.-++.+| -..++|+.++...... +. .+..+...........+.|+. +.++|||++.+
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~-----~~-----~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE-----KC-----NHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCc-----ce-----eeecccccceeeehhhcccccchhhhheeecCC
Confidence 355677778866666554 4678888876432211 01 111011111223355677875 56899999999
Q ss_pred CeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC--CC
Q 008496 296 GQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN 368 (563)
Q Consensus 296 g~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 368 (563)
|.|.+||++. ++...|..|+..|.++.|++.. ++|++||.||+|++||++..+-..++......+.++.|. ..
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 9999999875 3445788999999999999865 678999999999999999998888888888889999885 46
Q ss_pred ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCCCEEE
Q 008496 369 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYT 445 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~ 445 (563)
..|++....|.+..||++.. ++...+.+|.++|.|+.|+|++.+||||+.|++|+|||+.+.+. .+++. -..++.+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r 268 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR 268 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence 78999999999999999864 56788899999999999999999999999999999999986543 23322 2467899
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 008496 446 IRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKL-LYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~~~ 521 (563)
++|.|... ..||++++ |-.|+|||++..-. ..++..|+..++.++|.. |...|-+++.||+|..-.++
T Consensus 269 VkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 269 VKWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 99999754 36787765 77899999986543 456788999999999954 56678899999988766666
Q ss_pred CCe
Q 008496 522 EGK 524 (563)
Q Consensus 522 ~~~ 524 (563)
++.
T Consensus 341 nat 343 (839)
T KOG0269|consen 341 NAT 343 (839)
T ss_pred ccc
Confidence 543
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-23 Score=199.05 Aligned_cols=311 Identities=22% Similarity=0.352 Sum_probs=228.5
Q ss_pred CCceEEEEECCCC-CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 215 TSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 215 ~~~V~~~~~sp~~-~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
...|..+.|+|.+ +++.|. +.|.+..|++..+.... +.-.-.... .+-|+|++|.++|. +++|.
T Consensus 200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k------------~~~~fek~e-kk~Vl~v~F~engd-viTgD 264 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVK------------RQGIFEKRE-KKFVLCVTFLENGD-VITGD 264 (626)
T ss_pred cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEE------------Eeecccccc-ceEEEEEEEcCCCC-EEeec
Confidence 3567899999976 556665 56889999987654211 111011112 27799999999997 56999
Q ss_pred CCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe--eecccCeEEEecCCCce
Q 008496 294 YDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRNNVS 370 (563)
Q Consensus 294 ~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 370 (563)
.+|.|.||+..+. .......|.+.|++|+.-.+|. |+||+.|+.|..||-. -+..+.. ....+++..+.-....
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d- 341 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGD- 341 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCc-
Confidence 9999999998764 3333448999999999999986 5569999999999932 2222222 2223445444433333
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p 450 (563)
+..+.+.+.|..-.+...-. .+..+|......++.+|+..+++||+.|+.+++|+ ..++..+. .-..++.++.|.|
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhp 417 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHP 417 (626)
T ss_pred EEEeeccceEEEeeecCCce-EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccC
Confidence 66666666666555544433 33458999999999999999999999999999999 33443332 2346788999999
Q ss_pred CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-e---E
Q 008496 451 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-I---V 526 (563)
Q Consensus 451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~---~ 526 (563)
.| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.||.|+.|+||.+.... . +
T Consensus 418 sg----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 418 SG----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred cc----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 77 589999999999999998666555454 7899999999999999999999999999986543 2 2
Q ss_pred EEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 527 KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 527 ~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
....+ ..|+.|.|++|+++|..-+.|-.+-.|
T Consensus 487 ~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 487 GKCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 23334 679999999999999998888777666
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-24 Score=194.01 Aligned_cols=281 Identities=22% Similarity=0.379 Sum_probs=203.3
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL 288 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~ 288 (563)
-.+|.+-|+++.|.+-|+.+||++.|++++|||+...... -. ...+-..+.+.|..+.|-+ -|+.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------W~----~Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------WS----CTSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------eE----EeeeEEecCCcEEEEEecCccccce
Confidence 3579999999999999999999999999999997543221 01 1111223567899999976 4899
Q ss_pred EEEEeCCCeEEEEEcCC----------ceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 289 LATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+|++++|+++.||.... ....++....+.|+.++|.|. |-.|++++.||++|||+.-..--...
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~---- 151 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ---- 151 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc----
Confidence 99999999999998521 134567778899999999985 56789999999999998643211111
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCC---CCEEEEEeCC-----CcEEEEe
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIWN 426 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~---~~~las~s~d-----g~i~iwd 426 (563)
|.+...- .+.....+.....|+.|+|. ..+||.|+++ +.++||.
T Consensus 152 --------------------------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 152 --------------------------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred --------------------------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 1111100 01112234556779999974 4678888887 4788887
Q ss_pred CCCC----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------e
Q 008496 427 MKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------K 482 (563)
Q Consensus 427 ~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------------~ 482 (563)
.... ..+.++..|..+|+.|+|.|+-.. ...+||+++.|| |+||++... +
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 6433 235677899999999999997431 235899999999 999998631 2
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC---CeeEEEEecCCCEEEEEE
Q 008496 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTGNGGIFEVCW 540 (563)
Q Consensus 483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~---~~~~~~~~~~~~i~~l~w 540 (563)
.+..+.+|.+.|..+.|+-.|..|++.|.||.|++|...- .+++..+...+.+....+
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~ 340 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDF 340 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccc
Confidence 3455778999999999999999999999999999998642 345555554444443333
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.2e-25 Score=195.16 Aligned_cols=298 Identities=20% Similarity=0.373 Sum_probs=227.6
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEe----eecccccCCCCeEEEEEC
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH----VKGRTNEKSKDVTTLDWN 283 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~V~~l~~s 283 (563)
.+.+.|.+.|+++...|. |+++++|+.||.|.+||+.+....... -+..++ .+.+.+.|...|.++.|-
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s------~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS------GLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc------cceeheeeeccccCCccceeeeeeeEEe
Confidence 345679999999999995 899999999999999999875421111 011122 234556677889999999
Q ss_pred C-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCCceeEEeeecccC
Q 008496 284 G-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 284 ~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
| |.-++.+++.|.+++|||.+......--...+.|++-+|+|-. ..+++|..|-.|++-|+.+|.+...+..|.+.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 9 6678899999999999999876555444577889999999854 35667778889999999999999999999999
Q ss_pred eEEEecCCCc--eEEEEeCCCeEEEEEcCCC-cce--------------eeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496 360 TLDVDWRNNV--SFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (563)
Q Consensus 360 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i 422 (563)
++.++|.+.. .+++++.|+.|++||++.. .+. ++-..|.+.|+.++|..++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999997654 5678999999999998643 111 2234688899999999999999999999999
Q ss_pred EEEeCCCCceee-ee--cccCCCEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496 423 KIWNMKQDKYVH-DL--REHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498 (563)
Q Consensus 423 ~iwd~~~~~~~~-~~--~~~~~~i~~~~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~ 498 (563)
++|+..+++... .+ .-|.+. ..+++.- .+. .. .++---.++.+.++++-.+..+..+..|...|.+.+
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~-----s~--vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMD-----SD--VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred EEeecccCccccccccccccccc-ccceEEEeecc-----cc--eEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 999988765321 11 011111 1111110 000 01 223333458899999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEec
Q 008496 499 FSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~ 520 (563)
|-|+=+-+.+|+.|+.|..|..
T Consensus 343 ~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCchhhhhccccCCccccccc
Confidence 9999999999999999999986
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=199.58 Aligned_cols=272 Identities=26% Similarity=0.404 Sum_probs=213.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC----C
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK----T 346 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~----~ 346 (563)
+|...|..++-...-..+.+++.|.+.+||.++ |.......+|.+.|.+++|++.+..+++++.|++..||... .
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 345667777766666689999999999999976 67778899999999999999999999999999999999621 1
Q ss_pred CceeEEeeecccCeEEEec-CCCceEEEE--eCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496 347 EEWKQQFEFHSGPTLDVDW-RNNVSFATS--STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i 422 (563)
.+... -..|.+. -.... .....+..+ ..| .+|+ .|+..|.||.+.|.+..|-..|+.++++|.|.+.
T Consensus 226 P~~~a-~~~hSsE-eE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 226 PSNNA-PSDHSSE-EEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred CCCCC-CCCCCch-hhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 10000 0000000 00000 011111111 112 2333 3778899999999999999999999999999999
Q ss_pred EEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcC
Q 008496 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~sp 501 (563)
.+||..++..++.+.+|....+.++-.|.- .+++++|.|-+.|+||.+.. ..+..+.||...|+++.|.-
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQ---------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQ---------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcc---------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 999999999999999999998887766653 37889999999999999843 44678899999999999987
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe-eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~-~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|. .+++||.|.+|+|||+++.+ .+.++.....++-++.+..+..+|.-..|..|++||+.
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 64 58899999999999998754 67788888889999999999999999999999999973
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.3e-25 Score=210.76 Aligned_cols=248 Identities=27% Similarity=0.509 Sum_probs=197.9
Q ss_pred cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCC-----------ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCc
Q 008496 272 EKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT 338 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~ 338 (563)
.+.+.|..+..-|+. .++++++..+.+.|||... ....++.+|+..-++|.|++... +|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 356778888888854 6777888899999999542 11237889999889999998654 6899999999
Q ss_pred EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEe
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS 417 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s 417 (563)
|++||+...... . ....+...|.+|...|..++|++. ..+|++++
T Consensus 202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence 999998754211 0 012356678899999999999985 46789999
Q ss_pred CCCcEEEEeCC--CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCE
Q 008496 418 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV 494 (563)
Q Consensus 418 ~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i 494 (563)
+|+.+.|||++ +.++.+...+|.+++.|++|+|-+. .+||+||.|++|++||+|+- ++++++.+|...|
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 99999999999 5667778889999999999999763 58999999999999999974 4688999999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEecCCCee--------------EEEEec-CCCEEEEEEcCCCC-EEEEEECCCeEE
Q 008496 495 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGKI--------------VKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVC 557 (563)
Q Consensus 495 ~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~--------------~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v~ 557 (563)
++|.|||.. ..||+++.|+++.|||+..-.- +-...+ ...|.+++|+|.-- .|++...|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999975 7889999999999999965321 222222 24589999999886 455567788899
Q ss_pred EEEe
Q 008496 558 VLDF 561 (563)
Q Consensus 558 v~~~ 561 (563)
||..
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 9964
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=219.64 Aligned_cols=269 Identities=23% Similarity=0.384 Sum_probs=217.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
|...-+.++|.|+|.+|.+++.||.|++|+.... ...++..+...|++++-. +++|++|+.+++|.+|....++..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc
Confidence 3455899999999999999999999999986543 223444488888888754 459999999999999998877655
Q ss_pred EEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
..+....-|+.++.+..+ ..++.++.|-.|.+.+.......+.+++|.++|.++.|+|.+++||+.+-||.++||++.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 445444556777777654 4667888899999999998888999999999999999999999999999999999999998
Q ss_pred Cceeeeeccc--------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCEEEEEE
Q 008496 430 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF 499 (563)
Q Consensus 430 ~~~~~~~~~~--------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~ 499 (563)
+.+.+.+..- ...+..++|+|.+. .++..+.|+.|++|+.......+.+.. +...+..++|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 8776655421 44567899999864 467778899999999999888887753 4445899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
||+|+|||+++.||.|.|||+++... ......|+.++|.|+++.|-.-...|.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccc
Confidence 99999999999999999999987222 223456999999999987665554443
No 116
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=226.20 Aligned_cols=242 Identities=21% Similarity=0.371 Sum_probs=178.6
Q ss_pred eec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-------------CeEEEe-c-C-CCceEE
Q 008496 310 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-------------PTLDVD-W-R-NNVSFA 372 (563)
Q Consensus 310 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~-~-~-~~~~~~ 372 (563)
.+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-..... |+..-. - . .....-
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 8999999999999999999999999999998765322110000000 000000 0 0 000000
Q ss_pred EEeCCCeEEEEE---cCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
.+.....+.+-. .-..+|+..|.||.+.|..|.|+.+ .+|+|+|.|.++|+|++....++..|. |..-|+|++|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000111111100 0135788999999999999999964 578899999999999999999988774 99999999999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
|... .+++|||-||.||||++...+.+.-.. ...-|++++|+|||++.+.|+.+|.+++|++...++...+
T Consensus 419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 9753 489999999999999998776665444 3478999999999999999999999999999988876665
Q ss_pred ec---------CCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496 530 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 530 ~~---------~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~ 562 (563)
.- +..|+.+.+.|.. +.|.+.+.|..|+|||.|
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 31 2369999999744 568888899999999984
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.9e-23 Score=197.88 Aligned_cols=325 Identities=19% Similarity=0.293 Sum_probs=245.7
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCC--------cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 278 (563)
..+.+-||+..|.|++.||+.-.+++|-.-| .+||||-.+-. ...++. .-...|+
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------TL~V~g-------~f~~GV~ 158 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------TLHVIG-------FFDRGVT 158 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------eeeeec-------cccccce
Confidence 3456679999999999999999999887655 48999843211 111221 2246799
Q ss_pred EEEECC--CCCEEEEE--eCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 279 TLDWNG--EGTLLATG--SYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 279 ~l~~s~--~g~~l~sg--~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
|++||+ .|.+|..- +.+..+.+|+-..+ ...........|....|+|.+..|+.....+.+.+|+++++.+.+..
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~ 238 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ 238 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence 999998 35555544 33457889986533 22234445667899999998877776667789999999988766543
Q ss_pred ---eec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 354 ---EFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 354 ---~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
+.+ ..-++++.|..+...+++..+|.|.+|+.+..+..+....|.+.|-+++.-.+|.+| ||+.|..|..||-+-
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY 317 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc
Confidence 222 235789999999999999999999999998887776666999999999999999876 499999999998321
Q ss_pred Cc-----------eeee-----------------------------ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 430 DK-----------YVHD-----------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 430 ~~-----------~~~~-----------------------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
.+ .+++ ..+|......++-.|.. ..+++++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~---------~q~~T~gq 388 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK---------NQLLTCGQ 388 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh---------hheeeccC
Confidence 10 0111 11233334444444432 25889999
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE
Q 008496 470 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 549 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~ 549 (563)
|+.++||+ ..++.++.. -..++.++.|+|.| .+|.|+..|...+.|.++..++..-..+..+..+.++|+|..||+
T Consensus 389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence 99999999 556666654 35689999999999 999999999999999999888777777888999999999999999
Q ss_pred EECCCeEEEEEee
Q 008496 550 CFANHTVCVLDFR 562 (563)
Q Consensus 550 ~~~~~~v~v~~~~ 562 (563)
|+.|+.|.||-+.
T Consensus 465 gs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 465 GSHDNHIYIYRVS 477 (626)
T ss_pred ecCCCeEEEEEEC
Confidence 9999999998653
No 118
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.9e-25 Score=215.49 Aligned_cols=290 Identities=24% Similarity=0.392 Sum_probs=230.6
Q ss_pred ecCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEE
Q 008496 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (563)
Q Consensus 202 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 281 (563)
.+|.....+++||++.|.+++..|.|.+||+|+.||++|||.+.++.+. +++. -...|.|++
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-------------r~~~-----~d~~I~~va 448 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-------------RTVQ-----FDSEIRSVA 448 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-------------EEEe-----ecceeEEEE
Confidence 4566667889999999999999999999999999999999999887642 2221 134699999
Q ss_pred ECCCCC--EEEEEeCCC--------------------------------eEEEEEcCC-----ceeEeeccCCCCEEEEE
Q 008496 282 WNGEGT--LLATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGPIFSLK 322 (563)
Q Consensus 282 ~s~~g~--~l~sg~~dg--------------------------------~i~vw~~~~-----~~~~~~~~h~~~V~~l~ 322 (563)
|+|.+. .||++.... .+..|.... .-++....|..+|..+.
T Consensus 449 w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt 528 (733)
T KOG0650|consen 449 WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT 528 (733)
T ss_pred ecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee
Confidence 999764 344433322 223343210 01234456889999999
Q ss_pred eCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc
Q 008496 323 WNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG 399 (563)
Q Consensus 323 ~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~ 399 (563)
||..|.||++...+ ..|.|+++.....+..|....+.+..+.|.+...+....+...|++|++.....++.+.....
T Consensus 529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred eecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe
Confidence 99999999987765 578999998777777777778888999998887777777888999999988777777776677
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
.|..++.+|.|.-|+.|+.|+.+..+|+.- .++...++.|...+++++|++.-. ++++|+.||++.|+.-
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcEEEEee
Confidence 899999999999999999999999999874 456788899999999999988653 8999999999999852
Q ss_pred C------CC---eEEEEecCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 479 E------LG---KLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 479 ~------~~---~~~~~~~~h~~~----i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
. .. -.+..+.+|... |..+.|+|.-.||++++.||+|++|
T Consensus 680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 2 11 235667888655 8999999999999999999999998
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=194.63 Aligned_cols=276 Identities=18% Similarity=0.287 Sum_probs=199.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-----eeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK 345 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~ 345 (563)
+|.+.|++++|++||++|+|++.|+.||||++..-... ...-.-+--+.+.|.||..-++ ++-...++++|-+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 45788999999999999999999999999997642110 0011112347789999987654 55556689999653
Q ss_pred C---CceeE---------EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE
Q 008496 346 T---EEWKQ---------QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 412 (563)
Q Consensus 346 ~---~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 412 (563)
. |.... .-..|..+++++...++ ..+++++.|..|.+|++. ++.+..+......-...+.+|+|++
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence 2 11111 11123445666655554 456788999999999998 6666666655555566889999999
Q ss_pred EEEEeCCCcEEEEeCC---CC-----ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---
Q 008496 413 LASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--- 481 (563)
Q Consensus 413 las~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--- 481 (563)
||+++..--+++|..- .+ ..+..+++|...|..++|+|+.. .+++.|.||++||||+.-.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEec
Confidence 9999998899999752 22 23567889999999999999864 6899999999999997531
Q ss_pred -eEEEEec-------C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEE
Q 008496 482 -KLLYSLN-------G-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 482 -~~~~~~~-------~-h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~ 550 (563)
+-.+.++ . -..|+ .++.||+|+.||... ...+++|..++|+....+.. .+.|.+++|+++|+++|+|
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred CCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 1111111 1 12344 899999999998654 44699999999987666543 4679999999999999999
Q ss_pred ECCCeEEEEE
Q 008496 551 FANHTVCVLD 560 (563)
Q Consensus 551 ~~~~~v~v~~ 560 (563)
+|..+.|+.
T Consensus 392 -Gdr~vrv~~ 400 (420)
T KOG2096|consen 392 -GDRYVRVIR 400 (420)
T ss_pred -cceeeeeec
Confidence 466777763
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.6e-23 Score=203.59 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=205.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 008496 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG 305 (563)
Q Consensus 227 ~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~ 305 (563)
+.+++|++.|+.+++||+.++.. ...+.. ...+.+++|+|+|..+ ++++.++.|++|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-------------EEEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 35788999999999999875431 111111 1235679999999876 5677889999999764
Q ss_pred -ceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCc-eEEEEeCCC-eEE
Q 008496 306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN-MIY 381 (563)
Q Consensus 306 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~-~i~ 381 (563)
.....+..+.. +..+.|+|+++.++++ +.|+.+++||+.+...+..+... ..+..+.|.++. .++++..++ .++
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence 44444554444 4678999999977654 56899999999988766665432 234556675544 455555443 567
Q ss_pred EEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeecccCC-------CEEEEEEccCCC
Q 008496 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSK-------EIYTIRWSPTGS 453 (563)
Q Consensus 382 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~~p~~~ 453 (563)
.|+......+..+.. ...+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+.. ....++|+|++.
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 778876655444332 23457899999999875 455699999999998877665542211 224577888764
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCeeEEEEecC
Q 008496 454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg-s~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
.++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|.|||+.+++++..+...
T Consensus 220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 344555567789999999888776553 34578999999999999876 46899999999999999998877
Q ss_pred CCEEEEEEcC
Q 008496 533 GGIFEVCWNK 542 (563)
Q Consensus 533 ~~i~~l~w~~ 542 (563)
...++++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 7788888765
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=218.42 Aligned_cols=285 Identities=23% Similarity=0.358 Sum_probs=222.9
Q ss_pred EEEEeeCCCcEEEEecCCCCCcCCCCCCCceE------E------EEE--------eeecccccCCCCeEEEEECCCCCE
Q 008496 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNV------L------VLK--------HVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 229 ~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~------~------~~~--------~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
-+.|++.|++||+|++..+..+......++.. + .+. ......-.....|.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 48899999999999997633221111110000 0 000 000001122346999999999999
Q ss_pred EEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECC-CCceeEEeeecccCeEEE
Q 008496 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~ 363 (563)
||+|..-|++|||++.. ...+.+..|.+.|.+|.|+. ..+.|++++.|+-|.|+|+. .-.+++++..|...+..+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999864 45667889999999999985 23678999999999999985 456777888999999998
Q ss_pred ecCC---CceEEEEeCCCeEEEEEcCCCcceeeecCCC-----cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 364 DWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 364 ~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
.|.. +...++|+.|..|++-..........|..|. ..+..++..|..+++++++.|..|+||++.+++.+..
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 8853 3577899999887654333222233343332 3577899999999999999999999999999999998
Q ss_pred ecc---cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 436 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 436 ~~~---~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
|++ |.+....+...|.|. +||+...|.++.++|..+|+|+..+.||...|+.+.|++|.+.|++.+.|
T Consensus 634 FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 874 667788888888774 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCC
Q 008496 513 KSMHIWSLKE 522 (563)
Q Consensus 513 g~v~iw~~~~ 522 (563)
|.|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999864
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=8.5e-26 Score=214.22 Aligned_cols=250 Identities=23% Similarity=0.412 Sum_probs=187.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
+++.|+++++.|.|-.|++|+.|-.|++||..|-- ..........|.+++|++.|..|++.+.....+|+|-..
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 46789999999999999999999999999987631 122334556899999999999999999999999999655
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW 425 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iw 425 (563)
.++..... +|.+| -++ ..-+||...++|.+|+|+.+ .|+||+.||++|||
T Consensus 246 ~~~~e~~K---------------------GDQYI--~Dm------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 246 FEIVEFSK---------------------GDQYI--RDM------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred ceeeeeec---------------------cchhh--hhh------hccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 44333211 12222 121 23468999999999999764 68899999999999
Q ss_pred eCCCCce-eeeec-----ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCC--CE
Q 008496 426 NMKQDKY-VHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--PV 494 (563)
Q Consensus 426 d~~~~~~-~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~--~i 494 (563)
|++..+. ...++ +..-++++++|+|++. ++|+|..||+|.+|+...... .+.-.+|.. .|
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 9875442 22222 1223578999999986 689999999999999754322 233456766 89
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEEec---CCCEEEEEEcCCCCEEEEEEC------CCeEEEEE
Q 008496 495 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLD 560 (563)
Q Consensus 495 ~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~~~---~~~i~~l~w~~~g~~la~~~~------~~~v~v~~ 560 (563)
+||+||+||++|++-|.|+++++||++.-+ .+..+.+ .-.-++++|||+.+.|.+|.+ -|.+++||
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 999999999999999999999999998754 4444433 123468899999999998854 24566665
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-24 Score=192.81 Aligned_cols=260 Identities=17% Similarity=0.350 Sum_probs=207.1
Q ss_pred EEEEeCCCeEEEEEcCCc-------------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 289 LATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
|++|++...|.-+++.-. ....+..|.++|++++.+ +.++++||.|-+|+|||+++......+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 567777776666654211 123467899999999874 78999999999999999999888888888
Q ss_pred cccCeEEEecCCCc---eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 356 HSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 356 ~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
|.+.+.++.+.... .+++++.||.|.+|+.+.-..+.++++|.+.|+.++++|.+++-++.+.|+.+++||+-+++.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 99999998887655 799999999999999999999999999999999999999999999999999999999988775
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
...+.- ...-+.+.|+|.|. .++.++. ..|-||.+.+......+... ..+.++-|- ++.+|++|+.|
T Consensus 162 a~v~~L-~~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 162 AFVLNL-KNKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ceeecc-CCcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence 443332 12234499999875 3444443 46889988876655444322 346677764 56789999999
Q ss_pred CcEEEEecCCCeeEEEEecC-CCEEEEE--EcCCCCEEEEEECCCeEEEEEeeC
Q 008496 513 KSMHIWSLKEGKIVKTYTGN-GGIFEVC--WNKEGDKIAACFANHTVCVLDFRM 563 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~-~~i~~l~--w~~~g~~la~~~~~~~v~v~~~~~ 563 (563)
+.|.+||..+..++..+.++ ..|-++. =+|++.+|+++++||.|+|||++|
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 99999999988888777664 3465555 367899999999999999999986
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=220.51 Aligned_cols=241 Identities=21% Similarity=0.359 Sum_probs=204.6
Q ss_pred ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC-ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcc
Q 008496 312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390 (563)
Q Consensus 312 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 390 (563)
..|+..-+.|+|.|+|.+|++|+.||.|++|+.... +-...+..+...+..+.... ..|++++.+++|.+|.......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCc
Confidence 368888999999999999999999999999987554 33333333455555554433 3899999999999999988776
Q ss_pred eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 391 ~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
-..+...+-++++++++-+|+++|.||+|-.|++-++........+++|.++|.++.|.|.+. +||+.+.|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence 555555667899999999999999999999999999999888899999999999999999875 89999999
Q ss_pred CeEEEEeCCCCeEEEEecCC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC---CCEEEEE
Q 008496 471 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC 539 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h--------~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~---~~i~~l~ 539 (563)
|.|+|||+.++.+..++.+- ...+..++|+|+|..+|..+.|+.|++|+..++.....+..+ ..+..++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999999887776532 345778999999888888888999999999999888777543 3488999
Q ss_pred EcCCCCEEEEEECCCeEEEEEee
Q 008496 540 WNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 540 w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+|.|++||+++.||.|.|||++
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999986
No 125
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=218.35 Aligned_cols=231 Identities=24% Similarity=0.441 Sum_probs=198.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCc-------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 284 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
|.+++|+|||.||.|++|+.... ....+..|..-|..+....+++.|+++|.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 46788999999999999986421 244677899999999888899999999999999999976431
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEE-CCCCCEEEEEeCCCcEEEEeCCCCc--ee
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDK--YV 433 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~las~s~dg~i~iwd~~~~~--~~ 433 (563)
..++.++..|...|.|+++ -++..++|||+-|+.|.+||++++. .+
T Consensus 107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 0123456779999999999 8889999999999999999998762 22
Q ss_pred --------eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496 434 --------HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 504 (563)
Q Consensus 434 --------~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~ 504 (563)
..+. ++...||+++-.+.|. ++++|+..+.|++||.++++.+..+.||...|.++..++||+
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence 2233 6778899999888774 899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+++||.||+|++||+...+++.++..+ .+++++.-+|+=+++.+|..++.|..=|+|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999999999999999998753 568999999999999999999988776665
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=7.8e-23 Score=200.14 Aligned_cols=265 Identities=14% Similarity=0.156 Sum_probs=199.2
Q ss_pred CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
+.++++++.|+.+++|+.. +.....+..+.. +.++.|+|++..+ ++++.++.|++||+.+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999975 455566665544 5789999999876 5677889999999999887766654433 3345
Q ss_pred ecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccC
Q 008496 364 DWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 364 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~ 440 (563)
.|.++. .+++++.++.+++|++...+.+..+.. ...+.+++|+|+++++++++.++ .+.+||..++.....+.. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 565443 345556789999999988777766653 23467899999999999988875 467789888776554432 2
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----C--CEEEEEEcCCCCEEEE-EeCC
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----E--PVYSLAFSPTGEYLAS-GSLD 512 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~--~i~~l~~spdg~~las-gs~d 512 (563)
.....+.|+|++. .+++++..++.|++||+.+++.+..+..+. . ....++|+|+|+++++ .+.+
T Consensus 157 ~~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 157 QRPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred CCccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 3456788988875 345666679999999999988776654221 1 2346899999998654 4556
Q ss_pred CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEee
Q 008496 513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 562 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~-~~~~~v~v~~~~ 562 (563)
+.|.+||+.+++++........+.+++|+|+|++|+++ ..++.|.|||++
T Consensus 229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 78999999999888766555678999999999999876 458899999986
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6e-26 Score=223.48 Aligned_cols=257 Identities=26% Similarity=0.441 Sum_probs=221.4
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 008496 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN 304 (563)
Q Consensus 225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~ 304 (563)
|.+..++.+..+..+++|+.... ..|+..|.++..-..++.+++|+.|..+-+|...
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~ 58 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG 58 (825)
T ss_pred Ccccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeecccccc
Confidence 33445566666777888886421 1234456666665677899999999999999865
Q ss_pred C-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-EEEEeCCCeEEE
Q 008496 305 G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYV 382 (563)
Q Consensus 305 ~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~ 382 (563)
. .....+.+|.++|-+|.|++....|++|+.+|+|++||+...+.++.+.+|..++..++|.+... ++.++.|..+.+
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 3 23446899999999999999999999999999999999999999999999999999999987654 477889999999
Q ss_pred EEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 462 (563)
Q Consensus 383 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 462 (563)
||++...++..+.+|...+.++.|+|+|+++++|++|.+++|||...++...+|..|.+.+.++.|+|.. .
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---------~ 209 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---------V 209 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh---------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008496 463 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 513 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg 513 (563)
++++||.|++|++||+++-..+-........|.+++|+|+|..+++|-...
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 899999999999999998888888877788999999999999998876654
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=5.6e-24 Score=206.32 Aligned_cols=152 Identities=28% Similarity=0.551 Sum_probs=122.5
Q ss_pred eeEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496 401 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472 (563)
Q Consensus 401 i~~~~~~~-~~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~ 472 (563)
|+.+.|+| |...||.+++||.|++|.+..+ .+...+..|...|+++.|+|-.. .+|++++.|-+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~asyd~T 701 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVASYDST 701 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh--------hHhhhhhccce
Confidence 56778888 5567999999999999998643 23456788999999999999754 27999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE----EEEEEcCCCCEEE
Q 008496 473 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI----FEVCWNKEGDKIA 548 (563)
Q Consensus 473 i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i----~~l~w~~~g~~la 548 (563)
|+|||+++++....+.+|.+.|..++|||||+.+|+.+.||+|++|+.+.+.. ..+.+++.+ --+.|--||.+++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence 99999999999999999999999999999999999999999999999987642 223343332 3588999999777
Q ss_pred EEECCC----eEEEEEe
Q 008496 549 ACFANH----TVCVLDF 561 (563)
Q Consensus 549 ~~~~~~----~v~v~~~ 561 (563)
+.+.|+ .|.+||.
T Consensus 781 v~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDA 797 (1012)
T ss_pred Eecccccchhhhhhhhh
Confidence 655443 3445543
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=196.32 Aligned_cols=281 Identities=16% Similarity=0.246 Sum_probs=221.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce---eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCC
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~ 347 (563)
+....|+++.|+|...+|++|+.||.++||.++|+. +..+.--..||.+.+|.|+|. .+++++.......||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 345789999999999999999999999999998864 344555678999999999999 8899999999999999887
Q ss_pred ceeEEee--ecccC-eEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 348 EWKQQFE--FHSGP-TLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 348 ~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+..+.-. .+... +-.+.. .....++..+..|.|++....+...+.+++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 6543211 11111 111111 233466788899999998887777776665 467899999999999999999999999
Q ss_pred EEeCCCCceeeeecccCC-CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEecCCCCCEEE
Q 008496 424 IWNMKQDKYVHDLREHSK-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYS 496 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~ 496 (563)
+||++...+++.+....+ .-++++.++++. +||+||..|.|.|||..+ .+++..+......|++
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999998888764322 235566667765 899999999999999653 4567777777788999
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 497 LAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 497 l~~spdg~~lasgs~--dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++|+||++.||.+|. +..+++-.+..-.+...|+. -+-+.+|+|+|.|-+||+|-..|.|.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999998874 56788888877666555543 2458899999999999999999999999763
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=185.83 Aligned_cols=272 Identities=21% Similarity=0.358 Sum_probs=210.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
-.|+.|++-|.+||+|..||.|.|||... .....+.+|..||++++|+++|+.|+|+|.|..|++||+..+.+.+.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 68999999999999999999999999764 34557889999999999999999999999999999999999998887776
Q ss_pred cccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeecC--CC----cceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496 356 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG--HQ----GEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 356 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~----~~i~~~~~~~~~~~las~s~dg~i~iwd~ 427 (563)
. .|+....|.+ ...++++-.+..-.+.++... +..+-. .. ....+..|++.|+++.+|...|.+.++|.
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 4 4677777753 445555555555555555442 222211 11 11234568999999999999999999999
Q ss_pred CCCceeeeecccC-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C---eE--EEEecC--CCCCEE
Q 008496 428 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G---KL--LYSLNG--HREPVY 495 (563)
Q Consensus 428 ~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~---~~--~~~~~~--h~~~i~ 495 (563)
.+.+++..++--. ..|..+.++..|. .|+.-+.|..||.|+++. | .. .+.+.. .+.+-.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999998887665 7788899988775 678888999999998762 1 11 111111 123457
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecCCCeeEEEEecCC--CEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 496 SLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 496 ~l~~spdg~~lasgs~-dg~v~iw~~~~~~~~~~~~~~~--~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+++||.||.|++.|+. ...++||....|.+++.+.+.. ...++.|+|---.++.- ..|.|.||..
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 8899999999987774 4579999999999999998754 46799999998777766 6788999975
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=213.16 Aligned_cols=238 Identities=24% Similarity=0.420 Sum_probs=188.4
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--cc-----cCeEEEecC--CCceEEEEeCCCeEEEEEcCC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE 387 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~ 387 (563)
+..+|..+++-+.++.++. ..++||-+........... .. ....++.|. ....+++++..|.|.+|++..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3445556677777776653 4667776543322211111 11 123466775 346789999999999999987
Q ss_pred ---CcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 388 ---NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 388 ---~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
++.+..|..|...+++++|++.. .+|+|||.||+|++||++......+++.....|..++|+|... ..
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~ 191 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NK 191 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ce
Confidence 66777899999999999999865 5789999999999999999998888998889999999999653 47
Q ss_pred EEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEEEecCCCEEEEEE
Q 008496 464 LASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCW 540 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~~~~~~~i~~l~w 540 (563)
++++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||++.+.+ .+.+.....++..|.|
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence 899999999999999854 5567789999999999999999999999999999999998654 4555666677899999
Q ss_pred cCCCC-EEEEEEC--CCeEEEEEeeC
Q 008496 541 NKEGD-KIAACFA--NHTVCVLDFRM 563 (563)
Q Consensus 541 ~~~g~-~la~~~~--~~~v~v~~~~~ 563 (563)
.|+-. +||+|+. +-.|.|||+|+
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ccCccchhhhhhccccceEEEEeecc
Confidence 99874 7887744 66899999984
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.8e-25 Score=217.84 Aligned_cols=251 Identities=26% Similarity=0.479 Sum_probs=220.8
Q ss_pred EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
+++.+...-.+++|+.. .+..|...|.+++.-..+..+++|+.|..+-+|.+.....+-.+.+|..++-++.+..
T Consensus 6 ~~m~~~~~t~Lr~~~~~-----~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR-----EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred ccceeeeeeccccccch-----hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence 34444445567788753 3456888899998877888999999999999998876666667889999999999876
Q ss_pred C-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 368 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 368 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
. ..+++++.+|+|++||+...+.++++.||...+.+++|+|-+.++|+|+.|+-+++||.+...+.+.+.+|...+..+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 5 456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
+|+|+|. ++++|+.|.+++|||...|+.+..+..|...|.++.|+|..-++++||.|++|++||+++-.++
T Consensus 161 ~lsP~Gr---------~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 161 RLSPDGR---------WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred eecCCCc---------eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence 9999996 8999999999999999999999999999999999999999999999999999999999988777
Q ss_pred EEEec-CCCEEEEEEcCCCCEEEEEEC
Q 008496 527 KTYTG-NGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 527 ~~~~~-~~~i~~l~w~~~g~~la~~~~ 552 (563)
..... ..+|-+++|+|+|+.++.|..
T Consensus 232 ~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eccCCccCCceeeeecCCceeeecCch
Confidence 66543 356889999999998887744
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-21 Score=195.11 Aligned_cols=325 Identities=18% Similarity=0.326 Sum_probs=241.2
Q ss_pred ecCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 211 LEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
++.-.+.|+++ +||.. +.++.|+.+|.+.||++.+++. ++.++ + ....||++.-+|-=..
T Consensus 155 ~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----------v~~f~---~----~~s~IT~ieqsPaLDV 216 (910)
T KOG1539|consen 155 LKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV----------VYTFQ---E----FFSRITAIEQSPALDV 216 (910)
T ss_pred eeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE----------EEEec---c----cccceeEeccCCcceE
Confidence 33333347766 67864 6788999999999999987652 12222 1 2366999999998889
Q ss_pred EEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEee-ecccCeEEEec
Q 008496 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW 365 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~ 365 (563)
++.|..+|+|.|+++. ++...++..-.+.|+++.|..||+.+ ++|+..|.+.+||+...+.+.... .|.+.+....+
T Consensus 217 VaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 217 VAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 9999999999999976 56666776556999999999999765 566667999999999888877665 56566655555
Q ss_pred CC-CceEEEEeCCCeEEEEEcC--CC--cceeeecCCCcceeEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-------
Q 008496 366 RN-NVSFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY------- 432 (563)
Q Consensus 366 ~~-~~~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~i~~~~~~-~~~~~las~s~dg~i~iwd~~~~~~------- 432 (563)
.+ ...+++.+.|+.+++|-.+ .+ +.++.-.||..+..|+.|. .+|.++.+++.|++++.+++.....
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 44 4566788889887766544 33 3345556899999999987 6788899999999888886521100
Q ss_pred ---------------------eee--------------ecccCCC-----------------------------EEEEEE
Q 008496 433 ---------------------VHD--------------LREHSKE-----------------------------IYTIRW 448 (563)
Q Consensus 433 ---------------------~~~--------------~~~~~~~-----------------------------i~~~~~ 448 (563)
+.. +..|.+. +++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 000 0112221 222222
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
++.| .+.+.|+..|+|-+|++.+|....++ ..|..+|+.++...-++.+++++.+|.+++||..+..+
T Consensus 457 s~CG---------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 457 SFCG---------NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred eccC---------ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 2222 14566888999999999999998888 47999999999998899999999999999999987664
Q ss_pred EEEEe-----------------------------------------c-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 526 VKTYT-----------------------------------------G-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 526 ~~~~~-----------------------------------------~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+..+. + ...|++++|||||++|++++.|++|++||+-
T Consensus 528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 43331 1 2458999999999999999999999999973
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-21 Score=190.28 Aligned_cols=324 Identities=20% Similarity=0.289 Sum_probs=230.8
Q ss_pred eEecCCC-CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 209 TILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 209 ~~l~~h~-~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
.++.||. ..|.+++|. ++..|++.+.+|.|.-||+.+.... + ......+.|++++.+|.+.
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT 123 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence 4555654 679999999 5566788889999999999765421 0 1123357899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec-----c-c
Q 008496 288 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-----S-G 358 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~-~ 358 (563)
.++.|+.||.+...+...+.. ..|...++.|.+++|+|++..+++|+.||.|++||+..+......... . .
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 999999999877777664432 356677899999999999999999999999999999888765522221 1 1
Q ss_pred --CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--e-
Q 008496 359 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V- 433 (563)
Q Consensus 359 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~- 433 (563)
-+..+-+..+..++++..-|+|.+||-..+..++.+..|.+.|.|++..+++..+++++-|+.|..|...+.+. +
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 23445556778899999999999999999999999999999999999999999999999999998888765532 1
Q ss_pred -eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE--------------------------------------
Q 008496 434 -HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK-------------------------------------- 474 (563)
Q Consensus 434 -~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~-------------------------------------- 474 (563)
.....|...+.+++..++ .|.+|+.|.++.
T Consensus 284 ~~~r~~h~hdvrs~av~~~-----------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIEN-----------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred eccccCCcccceeeeeecc-----------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 222356666666665543 233333333333
Q ss_pred ----EEeCCCC--------eEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC------------------
Q 008496 475 ----LWDVELG--------KLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG------------------ 523 (563)
Q Consensus 475 ----iwd~~~~--------~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~------------------ 523 (563)
+|.+.+. ..+.. .......|.+.+.||||++||.+.-. +++||.+..-
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a 431 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDA 431 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccc
Confidence 3322221 00111 11123468999999999999987622 2444444320
Q ss_pred -eeEEE------------------Ee----------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 524 -KIVKT------------------YT----------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 -~~~~~------------------~~----------------~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.++.+ +. ....|+.+.-+++|++||+.+..|.|.|||+.
T Consensus 432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~ 505 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE 505 (691)
T ss_pred eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence 00000 00 12457889999999999999999999999975
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=195.47 Aligned_cols=229 Identities=21% Similarity=0.377 Sum_probs=192.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
.++|.+++-+|+|.+|+.|+..|.+++|.+. |.+...+.+|=.+|++++|+.||.+|+|||.||.|.+|++..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 4679999999999999999999999999975 677788899999999999999999999999999999998632
Q ss_pred eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC
Q 008496 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~ 430 (563)
++....++ ..+|...|..|.-.|+.+...+- ...|+|+|.|.++++||+..+
T Consensus 155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 11111121 35678889999999999887654 467899999999999999999
Q ss_pred ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------------CeEEEEecCCCC--
Q 008496 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------------GKLLYSLNGHRE-- 492 (563)
Q Consensus 431 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~-- 492 (563)
..+.++. ....+.+++..|... .+..|+.+|.|.+.++.. +..+..+.||..
T Consensus 209 ~LLlti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 209 VLLLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred eeeEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 8877664 456789999988764 678899999999987642 234556788988
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-cCCCEEEEEEcCCC
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEG 544 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~~g 544 (563)
+|+|++.|-||..|++|+.||.|+|||+...+++++.. ..+.|+.+.++|=-
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999999999999999998887 67888888887643
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.6e-23 Score=192.12 Aligned_cols=237 Identities=26% Similarity=0.347 Sum_probs=197.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE-----------------ee--ccCCCCEEEEEeCCCCCEEEEe
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----------------TL--SKHKGPIFSLKWNKKGDYLLTG 333 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----------------~~--~~h~~~V~~l~~~~~~~~l~s~ 333 (563)
|.-+|++|+++|++.+.++++.+|+|.=|+....... .. .+|...|.+++.+++|+||++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4567999999999999999999999999985421100 11 2688899999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 334 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
+.|..|.||+.++.+ +++.|.+|.+.|.+++|-....-+
T Consensus 221 g~d~~v~Iw~~~t~e-----------------------------------------hv~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE-----------------------------------------HVKVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred CCCceEEEecCcccc-----------------------------------------hhhcccccccceeeeeeecCccce
Confidence 999999999987754 445678999999999998777788
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 493 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 493 (563)
.++|.|+++++|++....++.++.+|+..|..|.-..-.. .+..|+.|+++++|++.. .....+.+|.+.
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR---------~vtVGgrDrT~rlwKi~e-esqlifrg~~~s 329 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRER---------CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS 329 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccc---------eEEeccccceeEEEeccc-cceeeeeCCCCC
Confidence 9999999999999999999999999999999887554432 566777999999999953 334456788889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec------C-------CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------N-------GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~------~-------~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
+-|++|=.+ ..+++||.+|.|.+|++.+.+++.+..- . ..|++|+--|..+.+|+|+.+|.|++|-
T Consensus 330 idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 330 IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 999999644 5789999999999999998888777642 1 1578999999999999999999999996
Q ss_pred e
Q 008496 561 F 561 (563)
Q Consensus 561 ~ 561 (563)
+
T Consensus 409 i 409 (479)
T KOG0299|consen 409 I 409 (479)
T ss_pred e
Confidence 4
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.1e-23 Score=195.93 Aligned_cols=239 Identities=21% Similarity=0.334 Sum_probs=192.4
Q ss_pred CeEEEEECCCCC-EEEEEeCCCeEEEEEcCCcee---EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 276 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 276 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
.+.++.|+.... .+++.+.|..+++|..+|+.. ..-......-+|+.......|+++|+..++|+|||++...
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl--- 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL--- 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH---
Confidence 388999998764 333445678999999887621 1111111233555555566899999999999999987432
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
..+.+.+|+..|+++.++....+||+++..|.|.|-.+.++.
T Consensus 113 --------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 113 --------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred --------------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 234567899999999999999999999999999999999888
Q ss_pred eeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCC-CEEEE
Q 008496 432 YVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG-EYLAS 508 (563)
Q Consensus 432 ~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg-~~las 508 (563)
....|... ...+.-+.|+|..+ .+|.+++.+|.|.+||+.....++.+ ..|..|...|+|+|.. .+||+
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr--------~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKR--------FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cccceecCCCCeEEEeecccccc--------eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 77777654 34455788888654 58899999999999999877776654 6799999999999975 67789
Q ss_pred EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496 509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~ 563 (563)
.+.|+.|.+||....+....+....+...++|.++|.+|++|..+|.|..||+|+
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 9999999999999888888887778889999999999999999999999999996
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=188.46 Aligned_cols=284 Identities=17% Similarity=0.256 Sum_probs=217.7
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 293 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~ 293 (563)
.+.|+++.|||.-.+|++||.|++++||.+... .+. .+....+ ...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~-----~lqS~~l---------~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNP-----KLQSIHL---------EKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cCh-----hheeeee---------ccCccceeeecCCCceEEEecc
Confidence 378999999999999999999999999998632 211 1111111 235799999999999 899999
Q ss_pred CCCeEEEEEcCCceeE---eeccCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-C
Q 008496 294 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 368 (563)
.-..++.||+...... .+.++. ..+.....+|++++|+..+..|.|.+--..+++++..+... +.+.++.|.. .
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSds 356 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDS 356 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCC
Confidence 9999999998653332 233343 34566677999999999999999999999999988877653 4566777754 4
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCC------CceeeeecccCC
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSK 441 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~------~~~~~~~~~~~~ 441 (563)
..+++++.+|.|++|+++....+..|....+ .-++++.++++.+||+||+.|.|.|||.++ .+++..+..-..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 5678888899999999999988888763222 235788889999999999999999999653 345666666677
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
.|+++.|+|++.- +.++|-..+..+|+-.+.+......+. ..-+.|+|++|||.|.+||.|..+|+|.+|
T Consensus 437 ~Itsl~Fn~d~qi-------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 437 AITSLQFNHDAQI-------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eeeeeeeCcchhh-------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 8999999998751 234555567889998877654433332 223458999999999999999999999999
Q ss_pred ecC
Q 008496 519 SLK 521 (563)
Q Consensus 519 ~~~ 521 (563)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 875
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.7e-22 Score=178.36 Aligned_cols=243 Identities=23% Similarity=0.415 Sum_probs=189.8
Q ss_pred eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--Cc--eeEEeeecccCeEEEecCC---CceEEEEeCCCeEEEE
Q 008496 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC 383 (563)
Q Consensus 311 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~ 383 (563)
-.+|..-|.++.|.+.|+++++|+.|++++|||.+. +. +...+..|.+.+..+.|.. ...+|+|+.|+++.+|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357889999999999999999999999999999643 33 4557889999999999964 3578999999999999
Q ss_pred EcCCC---------cceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCC------CCceeeeec-------cc
Q 008496 384 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH 439 (563)
Q Consensus 384 ~~~~~---------~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~------~~~~~~~~~-------~~ 439 (563)
.-... ....++....+.|+.++|.|. |-.+|+++.||.+|||+.- .....++++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 86321 123455666788999999985 5678999999999999753 333444444 46
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC----eEEEEecCCCCCEEEEEEcCC-C---CEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPT-G---EYL 506 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~h~~~i~~l~~spd-g---~~l 506 (563)
..+..|+.|+|.-. ++.+||.|+.+ +.++||....+ ..+.++.+|..||++|+|.|+ | ..|
T Consensus 169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 77889999996432 23468888766 47889975432 345677899999999999997 3 468
Q ss_pred EEEeCCCcEEEEecCCC--------------------eeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 507 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 507 asgs~dg~v~iw~~~~~--------------------~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|+|+.|| |+||.++.. +.+..+.. ++.|..++|+-.|..|++.+.||.|++|.
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999999 999999731 12333433 45799999999999999999999999984
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=187.86 Aligned_cols=263 Identities=21% Similarity=0.351 Sum_probs=204.1
Q ss_pred EEeCC-CeEEEEEcC-CceeEeeccC-CCCEEEEEeCCCCCEEEEeeCC-CcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 291 TGSYD-GQARIWSTN-GDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 291 sg~~d-g~i~vw~~~-~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+++.| ..+.+||+. |....++.+- ...-.++..- .+.|++++... ..+.+|.+.......+...-.+++.++.-.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 458888875 3333344332 1111111111 23577776554 468899887665555555566788888888
Q ss_pred CCceEEEEe-CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC---------CCceeeee
Q 008496 367 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL 436 (563)
Q Consensus 367 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~---------~~~~~~~~ 436 (563)
+...|+.++ -.+.||+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++. +-++.+.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 888887776 88999999999999999999999999999999999999999999999999762 34577889
Q ss_pred cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
..|.-+|+.+...+.|.. ..|+|+|.|.++|+||+..|.++.++. ...+|.+++.+|-++.+..|+.+|.|.
T Consensus 171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 999999999998776532 278999999999999999999988876 456899999999999999999999999
Q ss_pred EEecCCCe----------------eEEEEecC---CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 517 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~~----------------~~~~~~~~---~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.++.+.. ....+.++ ..|++|+.+.||+.|++|..||.|+|||+.
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 98875432 12223332 369999999999999999999999999975
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.9e-22 Score=177.81 Aligned_cols=204 Identities=25% Similarity=0.495 Sum_probs=167.2
Q ss_pred ccCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCc------ee---------EEeeecccCeEEEecC--CCceEEE
Q 008496 312 SKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEE------WK---------QQFEFHSGPTLDVDWR--NNVSFAT 373 (563)
Q Consensus 312 ~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~------~~---------~~~~~~~~~~~~~~~~--~~~~~~~ 373 (563)
..|.+.|.+|...+ .|+|+++|++||.+.+||++... ++ +.-..|.-.+.++-|. +...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999998876 57899999999999999997543 11 0112344456777774 5678999
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC---CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~---~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p 450 (563)
++-|.++.+||..+.+....|. -.+.|.+-+|+|- .-++|+|..|-.|++-|+.++.+.+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999998877766664 4566777778874 34789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEec--------------CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 451 TGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLN--------------GHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 451 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~--------------~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
... .+|++||.||.||+||++.. .|...+. .|.+.|+.++|+.||.++++++.|.++
T Consensus 199 ~~e--------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 199 SSE--------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred Cce--------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 753 68999999999999999854 3443333 466779999999999999999999999
Q ss_pred EEEecCCCe
Q 008496 516 HIWSLKEGK 524 (563)
Q Consensus 516 ~iw~~~~~~ 524 (563)
++|+..+|+
T Consensus 271 r~wn~~~G~ 279 (397)
T KOG4283|consen 271 RVWNMESGR 279 (397)
T ss_pred EEeecccCc
Confidence 999998875
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-21 Score=187.44 Aligned_cols=279 Identities=20% Similarity=0.361 Sum_probs=212.5
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
..+|.++||+.+.+.||.+-.||.|-||++..+= +....+.+ +....|..++|+ +|..|++.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------------~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g~ 88 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------------FLEPVIHG---PEDRSIESLAWA-EGGRLFSSGL 88 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc------------eeeEEEec---CCCCceeeEEEc-cCCeEEeecC
Confidence 4679999999999999999999999999986531 11111222 446789999999 4556788899
Q ss_pred CCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 295 DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 295 dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
+|.|.-||+. ++.+..+....++|++++.+|.+..++.|+.||.+...+...+.....
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~--------------------- 147 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK--------------------- 147 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE---------------------
Confidence 9999999975 566777888889999999999999999999999776666655432110
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-----c---cCCCEEE
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-----E---HSKEIYT 445 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~ 445 (563)
..|...++.|.+++|+|++..||+|+.||.|++||..++..++-.. . ...-|.+
T Consensus 148 ------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 148 ------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred ------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 1122235789999999999999999999999999999887665211 1 1223556
Q ss_pred EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 446 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 446 ~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
+.+-.++ .|++|..-|+|++||...+.++.....|...|.+++-++++.+++++|.|++|.-|...+++-
T Consensus 210 v~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 210 VLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 6655444 589999999999999999999999999999999999999999999999999999998876543
Q ss_pred E--EE--Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 526 V--KT--YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 526 ~--~~--~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
- .. ... ...+-+++--++ .|.+|+.|..++|--
T Consensus 280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 1 11 111 223555555444 777777777776643
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=175.96 Aligned_cols=284 Identities=26% Similarity=0.439 Sum_probs=207.6
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCce---EEEEEeeecccccCCCCeEEEEEC-------CCCCE
Q 008496 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLN---VLVLKHVKGRTNEKSKDVTTLDWN-------GEGTL 288 (563)
Q Consensus 219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~V~~l~~s-------~~g~~ 288 (563)
..|.|||||..|++-+.|..+++|+++.......+ ..+.. ...++. .....|...+|- |+..+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~~~~~~~r~------~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNFSKHLSYRY------QEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCccccccceeEEe------ccCCEEEEEEeeeccccCCCccce
Confidence 36899999999999999999999998753322211 11111 111111 123457888885 67889
Q ss_pred EEEEeCCCeEEEEEc-CCceeEeecc--CCC---CEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCCceeEEeeecccCeE
Q 008496 289 LATGSYDGQARIWST-NGDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 289 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~~~ 361 (563)
+++.+.+.-|.+||. .|++.+.+.. |.. ...+|+|+|+|.+|++|. .++|+++|+ +.|..-..+..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------ 198 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------ 198 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh------
Confidence 999999999999995 5777766543 433 346899999999999875 579999998 54431111100
Q ss_pred EEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccC
Q 008496 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 362 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 440 (563)
. .+--.+..+-|.|++|+|.. +.+|.|+.-.++-||.-...+++..+.+|.
T Consensus 199 --~--------------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~ 250 (406)
T KOG2919|consen 199 --V--------------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG 250 (406)
T ss_pred --h--------------------------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence 0 00012345678899999965 589999999999999988899999999999
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-CeEEEEecCCCC-CEEEEEE--cCCCCEEEEEeCCCcE
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSM 515 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~h~~-~i~~l~~--spdg~~lasgs~dg~v 515 (563)
+.|+.++|.++|. -|.+|+ .|..|..||++. +..++.+..|.. .-..|-| .|+|++||+|+.||.|
T Consensus 251 gGvThL~~~edGn---------~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 251 GGVTHLQWCEDGN---------KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred CCeeeEEeccCcC---------eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence 9999999999985 355554 478999999985 456778877765 3334555 6899999999999999
Q ss_pred EEEecCC-CeeEEEEe-cCCCEEEEEEcCCCCEEEEEECC
Q 008496 516 HIWSLKE-GKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 516 ~iw~~~~-~~~~~~~~-~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
++||+++ |..+..+. ....+..++++|--.++|++++.
T Consensus 322 ~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 322 RVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999987 55343332 34567899999998889988765
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=4.9e-22 Score=182.12 Aligned_cols=256 Identities=26% Similarity=0.486 Sum_probs=194.5
Q ss_pred cCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 212 EGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
.+|.+.|+.+.-++-+ .+.|+-+..|.+.||++.... .+ ++..+ +.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-----------------------------~~--l~~~~-~~ 195 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-----------------------------NA--LSEPG-LE 195 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhh-----------------------------hh--hcCcc-cc
Confidence 4677778877777754 567777789999999975311 00 00000 00
Q ss_pred EEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeE---EeeecccCeEEEec
Q 008496 290 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDVDW 365 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~ 365 (563)
+ =+.....+.++.+|.+.=++|+|||--. .|+||..-+.|++|...++.|.- .|..|...|-++.|
T Consensus 196 ~----------~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW 265 (440)
T KOG0302|consen 196 V----------KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW 265 (440)
T ss_pred c----------cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc
Confidence 0 0123455667889999999999999443 48899989999999999988764 46678888999999
Q ss_pred CC--CceEEEEeCCCeEEEEEcCCC--cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Cceeeeecc
Q 008496 366 RN--NVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLRE 438 (563)
Q Consensus 366 ~~--~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~~ 438 (563)
.+ +..|++|+.|++|++||++.. ++....+.|.+.|+.|.|+....+||+|++||+++|||+++ +.++..|+.
T Consensus 266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence 64 568999999999999999876 34455589999999999999999999999999999999874 567889999
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-------------------eEEEEecCCCCCEEEEEE
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------------KLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~ 499 (563)
|..+|++|.|+|.... .|++++.|..|.|||+..- ++++.-.+ ...|..+.|
T Consensus 346 Hk~pItsieW~p~e~s--------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhW 416 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDS--------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHW 416 (440)
T ss_pred ccCCeeEEEeccccCc--------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhhee
Confidence 9999999999997643 6888999999999997531 12233222 234778899
Q ss_pred cCCC-CEEEEEeCCCcEEEEe
Q 008496 500 SPTG-EYLASGSLDKSMHIWS 519 (563)
Q Consensus 500 spdg-~~lasgs~dg~v~iw~ 519 (563)
++.- .+|++.+.|| +.||.
T Consensus 417 H~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccCCCCeEEEecccc-eeEEE
Confidence 9874 5778888888 55664
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=3.1e-19 Score=182.79 Aligned_cols=327 Identities=34% Similarity=0.639 Sum_probs=253.9
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE-CCCCC-
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT- 287 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~- 287 (563)
.+.+|...|.++.|++.+..++.++.|+.+.+|+...+.. ......... ...+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence 4567899999999999999999999999999999875430 011111100 034666666 78887
Q ss_pred EEEEEeC-CCeEEEEEcCC--ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 288 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 288 ~l~sg~~-dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
+++..+. |+.+++|+... .....+..|...|..++|+|++.++++++. |+.+++|++..+.....+..|...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 5555444 99999999885 677788999999999999999998888885 9999999999888888888888899999
Q ss_pred ecCCCce-E-EEEeCCCeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeccc
Q 008496 364 DWRNNVS-F-ATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 439 (563)
Q Consensus 364 ~~~~~~~-~-~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~ 439 (563)
.|..+.. + ++++.|+.|.+|+......+. .+.+|.... ...|+|++.++++++.|+.+++|+...... +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 9986553 4 444899999999887666666 688888875 448999999999999999999999986664 4444678
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH 516 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasg-s~dg~v~ 516 (563)
...+.++.|.|.+. .+++++.|+.+++||........... .|...+..+.|++++..++.+ ..|+.+.
T Consensus 284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 89999999998543 45568888999999998887766665 788889999994443566655 6889999
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE-EECCCeEEEEEee
Q 008496 517 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~-~~~~~~v~v~~~~ 562 (563)
+|++..............+..+.|.+ ...+.. +..++.+.+|+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 99998877333333333378999999 544443 6788899999875
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.2e-21 Score=179.74 Aligned_cols=313 Identities=19% Similarity=0.356 Sum_probs=191.2
Q ss_pred CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
.+|..+.|.+... .|||||.|..||||.+..+...+.. ..+.. ......|...|+++.|+|+|.+|++|+.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~y----~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVEY----LSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEEE----eecccCCcceeEEEEEcCCcCeeeecCC
Confidence 5789999999865 9999999999999998765432211 11111 1223456788999999999999999999
Q ss_pred CCeEEEEEcC--------C---------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 295 DGQARIWSTN--------G---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 295 dg~i~vw~~~--------~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
+|.+.+|... . ..+..+.+|...|+.++|+|++.++++++.|+++++||+..+.....+..|.
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 9999999754 2 1234678899999999999999999999999999999999998777666666
Q ss_pred cCeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCC---cEEEEeCCCCcee
Q 008496 358 GPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKYV 433 (563)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg---~i~iwd~~~~~~~ 433 (563)
.-+..+.|..-.. +++-+.|...+.+.+...+. +.++.. ...++-....+ ..|++.-++.+
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----------~~~~~~---~~m~~~~~~~~e~~s~rLfhDeTlk-- 230 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----------IKRHGL---DIMPAKAFNEREGKSTRLFHDETLK-- 230 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeee----------eeeeee---eEeeecccCCCCcceeeeeecCchh--
Confidence 5555566654332 23333333222222211111 111110 00111111111 12222211111
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcC---------
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSP--------- 501 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~sp--------- 501 (563)
.-...++|+|+|.-...|.+. +-++. .-++.++++-. ..++...+.+-..++..+.|+|
T Consensus 231 -------sFFrRlsfTPdG~llvtPag~--~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~ 301 (434)
T KOG1009|consen 231 -------SFFRRLSFTPDGSLLVTPAGL--FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLS 301 (434)
T ss_pred -------hhhhhcccCCCCcEEEcccce--eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccc
Confidence 112456777877521111110 00000 01223334322 1234445555555666666665
Q ss_pred ---------CCCEEEEEeCCCcEEEEecCCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 502 ---------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 502 ---------dg~~lasgs~dg~v~iw~~~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
-+-.+|.++.+ .|+|||.++-..+.... .-..|++++|++||..|++++.||.+.++-|
T Consensus 302 ~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 302 SEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred ccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 22345666655 59999988765443332 2457899999999999999999998877655
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.2e-21 Score=173.93 Aligned_cols=297 Identities=21% Similarity=0.404 Sum_probs=206.9
Q ss_pred eEecCCCCceEEEEECC----C-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC
Q 008496 209 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp----~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 283 (563)
.+...|+.+|+.++|++ + ...+||.|+ ..+.||....... ...+..... ..+......++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~----------ir~lq~y~D--~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG----------IRLLQSYAD--EDHDESFYTCSWS 98 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc----------eeeeeeccC--CCCCcceEEEEEE
Confidence 45678999999999996 2 246777655 5688888653210 011111111 1234456778887
Q ss_pred CC----CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 284 GE----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 284 ~~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
-+ ..++|.||.-|.|||.|.. ++....+.+|..+|..++++|.. ++++++|.|.+|++||+++..++..|.
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--- 175 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--- 175 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence 54 4578999999999999975 56667889999999999999976 678999999999999999987665442
Q ss_pred cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
-+.||.+.|.+++|+++|.+|+||+.|.+|++|+++..+.-..+.
T Consensus 176 -----------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 176 -----------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred -----------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 246899999999999999999999999999999997543211110
Q ss_pred ccCCCEEEEEEccCCCC-------CCCCC------C----------cEEEEEEeCCCeEEEEeC-CCCeE----------
Q 008496 438 EHSKEIYTIRWSPTGSG-------TNNPN------Q----------QLILASASFDSTVKLWDV-ELGKL---------- 483 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~-------~~~~~------~----------~~~l~s~s~dg~i~iwd~-~~~~~---------- 483 (563)
.++.|+|++.. ...|. + -.+++|-|.++.|..|.. +-++.
T Consensus 221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 01122222211 00000 0 015788889999999976 21111
Q ss_pred ---EEEecCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEecCCCeeEE--EE---ecCCCEEEEEEcCCCCEEEEEECC
Q 008496 484 ---LYSLNGHREPVYSLA--FSPTGEYLASGSLDKSMHIWSLKEGKIVK--TY---TGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 484 ---~~~~~~h~~~i~~l~--~spdg~~lasgs~dg~v~iw~~~~~~~~~--~~---~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
+.++.-....|+-+. |.|-+++||.|...|.|.+||++...... ++ .....|-..+|+.||..|++...+
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 222322233455554 55668999999999999999998765421 11 234457889999999999999999
Q ss_pred CeEEEEEee
Q 008496 554 HTVCVLDFR 562 (563)
Q Consensus 554 ~~v~v~~~~ 562 (563)
++|.-||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999999864
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.6e-23 Score=211.81 Aligned_cols=242 Identities=21% Similarity=0.455 Sum_probs=198.1
Q ss_pred CCeEEEEECCCCCE----EEEEeCCCeEEEEEcCC-------ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEE
Q 008496 275 KDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVW 342 (563)
Q Consensus 275 ~~V~~l~~s~~g~~----l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iw 342 (563)
.....|+|.+.|.. |+.|..||.|.+|+... ....+...|+++|.+|.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999987765 89999999999999653 23446788999999999999765 89999999999999
Q ss_pred ECCCCceeEEee--ecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ceeEEEECCCC-CEEEE
Q 008496 343 DVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTG-SLLAS 415 (563)
Q Consensus 343 d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~-~~las 415 (563)
|+...+..-.+. .....|.++.|... ..|++++.+|.+.+||++..+++..+.-|.+ .+..++|+|+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998643322221 12345788899754 4678889999999999999999988876655 47789999986 45666
Q ss_pred EeCCC---cEEEEeCCC-CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496 416 CSDDV---TAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 416 ~s~dg---~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 491 (563)
+++|. .|.+||++. ..+++.++.|...|.++.|++.+. .+|+|++.|+.|.+|+..+++.+..+....
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 66654 589999875 345677889999999999998763 388999999999999999999999998878
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCe
Q 008496 492 EPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 492 ~~i~~l~~spdg~-~lasgs~dg~v~iw~~~~~~ 524 (563)
..++.+.|.|-.. .++.++.||.|-||.+..+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8999999999765 78899999999999997654
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=6.2e-22 Score=181.50 Aligned_cols=220 Identities=25% Similarity=0.454 Sum_probs=169.3
Q ss_pred EeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496 309 CTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 386 (563)
.....|.+.+.-++-.+-+ .+.++-+..|.|.|||+...- +.+. ..+... ...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~---------------------~~~~~~--~~s 199 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS---------------------EPGLEV--KDS 199 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc---------------------Cccccc--ccc
Confidence 3455677777777776655 345556678999999975421 0000 000000 013
Q ss_pred CCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee---eeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496 387 ENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYV---HDLREHSKEIYTIRWSPTGSGTNNPNQQL 462 (563)
Q Consensus 387 ~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 462 (563)
..+|+.++.+|.+.=..++|||-. ..|+||.--+.|++|...++... ..|.+|...|-.++|+|... .
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--------~ 271 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--------G 271 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--------c
Confidence 567899999999999999999932 23678888889999998877653 34567999999999999765 3
Q ss_pred EEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC---CeeEEEEec-CCCE
Q 008496 463 ILASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTG-NGGI 535 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~---~~~~~~~~~-~~~i 535 (563)
+++|||.||+|+|||++.+ .++.+ +.|.+-|+.|+|+..-.+||+|+.||+++|||++. ++.+.+|+- ...|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 8999999999999999987 34444 78999999999999988999999999999999986 456777764 5689
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEEee
Q 008496 536 FEVCWNKE-GDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 536 ~~l~w~~~-g~~la~~~~~~~v~v~~~~ 562 (563)
+++.|+|. ...||+++.|.+|++||+.
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEee
Confidence 99999995 4688888899999999985
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.4e-22 Score=189.25 Aligned_cols=237 Identities=21% Similarity=0.372 Sum_probs=195.8
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
.-|.+|..+|||+.|++||.-.++.|||+...+..- +.......-...+++.|||.++.+++..|
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpri---------------kaeltssapaCyALa~spDakvcFsccsd 530 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI---------------KAELTSSAPACYALAISPDAKVCFSCCSD 530 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcch---------------hhhcCCcchhhhhhhcCCccceeeeeccC
Confidence 347889999999999999999999999997643211 11111112345678999999999999999
Q ss_pred CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 374 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (563)
|.|+|||+.. .++..|.+|+..+.||..+++|..|-||+.|++||.||++++...++..+
T Consensus 531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF------------------- 591 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF------------------- 591 (705)
T ss_pred CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-------------------
Confidence 9999999865 46678999999999999999999999999999999999998754433221
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCC
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 454 (563)
...|.++.++|++.+||.|-.++.+.|-..... ..+.+..|...|.++.|.+.|.
T Consensus 592 -----------------------~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGk- 646 (705)
T KOG0639|consen 592 -----------------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGK- 646 (705)
T ss_pred -----------------------hhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCc-
Confidence 235667888999999999999998888765433 2345667899999999999986
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 455 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
++++.+.|+.+..|..--|..++..+. ..+|++...|-|.+||+|||.|+...||.+
T Consensus 647 --------wfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 --------WFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --------eeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 789999999999999988998888874 578999999999999999999998888875
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8e-21 Score=170.25 Aligned_cols=234 Identities=16% Similarity=0.251 Sum_probs=185.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
...|+.|.|+|.+..|+.++.||.+++|+.........-.|..|+.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence 4679999999999999999999999999987765445557999999999987 46799999999999999987641
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
..+..|...|.|+.+.+-...+++||.|++|++||.+....+
T Consensus 88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 123458889999999998889999999999999999876555
Q ss_pred eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeC
Q 008496 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 434 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~ 511 (563)
..+.. ...|+++...-+ .|+.|..|..|.+||+++........ ...-.+.+|++-|++.-+|.+|-
T Consensus 130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 54433 347888765432 57888899999999999766544222 23456899999999999999999
Q ss_pred CCcEEEEecCCC----eeEEEEec----------CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 512 DKSMHIWSLKEG----KIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 512 dg~v~iw~~~~~----~~~~~~~~----------~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
||+|.+=.+... +.--.|.- --+|.+++|+|--..+|+|++||-|.+||..
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 999987666544 11122221 1257899999999999999999999999974
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=4.5e-21 Score=180.09 Aligned_cols=277 Identities=19% Similarity=0.313 Sum_probs=203.6
Q ss_pred CCCCeEEEEECCCC--CEEEEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEEC
Q 008496 273 KSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 273 ~~~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~ 344 (563)
....|++++|+|.. +++++|..-|+|-+|+..++ -...+..|..+|.+|.|+|.+ ..+++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 45779999999964 58889999999999998532 345678899999999999966 67999999999999999
Q ss_pred CCCceeEEeeec--ccCeEEEecCC-CceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCC-EEEEEeCC
Q 008496 345 KTEEWKQQFEFH--SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGS-LLASCSDD 419 (563)
Q Consensus 345 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~-~las~s~d 419 (563)
++......+... ..-..++++.. +...+.+..=|...+||.+..+. ...+.-|...|++++++|... +|||||.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 876433322221 11122333332 23344444445778898887654 555667888999999999765 58999999
Q ss_pred CcEEEEeCCCCc----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeEEEEecCCC
Q 008496 420 VTAKIWNMKQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGHR 491 (563)
Q Consensus 420 g~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~ 491 (563)
++++|||++.-. ++.....|...|.+..|+|.+. -|++-+.|..|||||.. .......+. |.
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn 414 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HN 414 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-cc
Confidence 999999987532 2334457999999999999875 37888999999999983 222222222 21
Q ss_pred ------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC--CCEEE-EEEcCCCCEEEE-EECCCeEEEE
Q 008496 492 ------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFE-VCWNKEGDKIAA-CFANHTVCVL 559 (563)
Q Consensus 492 ------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~--~~i~~-l~w~~~g~~la~-~~~~~~v~v~ 559 (563)
-......|.|+..+|++|-.-..|-|+|-..++++..+-.. ..|.+ ..|+|-+..+|+ +...|.|.||
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 13456789999999999999999999999999888775332 13444 579999985555 4556777776
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=183.70 Aligned_cols=234 Identities=24% Similarity=0.383 Sum_probs=181.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCc----e------------------eEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEE
Q 008496 285 EGTLLATGSYDGQARIWSTNGD----L------------------KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIV 341 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~----~------------------~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~i 341 (563)
-|+++|.|+.|..|.|||++=. . .....+|+..|..|.|+..- +.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999996410 0 01124699999999999865 56789999999999
Q ss_pred EECCCCceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeC
Q 008496 342 WDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSD 418 (563)
Q Consensus 342 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~ 418 (563)
||+.++++..++..|...+..+.|.+. ..+++++.|+++.+.|.+........-.-.+.|-.++|+|.... ++++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999999764 56789999999999998842221111123567889999997654 667788
Q ss_pred CCcEEEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEE
Q 008496 419 DVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVY 495 (563)
Q Consensus 419 dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~ 495 (563)
||+++-+|++.. +++.++++|.++|.+|++++... .+|+++|.|+.|++|++..... +..-.-.-+...
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------cceeeccccceEEEEeecCCCCccccccccccccee
Confidence 999999999875 88999999999999999987654 3799999999999999864332 222111122356
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecCCCeeE
Q 008496 496 SLAFSPTG-EYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 496 ~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
|.++.|+- -+||.|+..+.++|||+.+...+
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 77778875 46788888889999999876543
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.5e-22 Score=189.70 Aligned_cols=265 Identities=22% Similarity=0.343 Sum_probs=193.9
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
..+++.|.+.|.+++|+|....|++++.||++++|.+..... .. ...+..+..+. .|..+|.|++.++.+.
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--s~---~~~~epi~tfr----aH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--SA---EKDVEPILTFR----AHEGPVLCVVVPSNGE 357 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--cc---ccceeeeEEEe----cccCceEEEEecCCce
Confidence 348899999999999999999999999999999999954111 11 11122233333 3568899999999999
Q ss_pred EEEEEeCCCeEEEEEcCC-----------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 288 LLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
.+.+|+-||+|+.|++.. .+...+.||++.|+.+++|+...+|++|+.||++++|+...... ..|...
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999999999996421 23457889999999999999999999999999999999765544 222211
Q ss_pred --ccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcceeeecC-------CCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 357 --SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 357 --~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
.+..+.+++.... ..+++..-+.--+.+......+..+.. ....++-+.++|.+.+.+++..|+.|+++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 1122233322211 111111111111222222222222221 12357889999999999999999999999
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 491 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 491 (563)
|..++.+++...+|...++++++.|+|. +|++++.||.|++|.+....++.....|+
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999885 89999999999999998888877776664
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=176.28 Aligned_cols=236 Identities=20% Similarity=0.353 Sum_probs=181.3
Q ss_pred EEEEeCC-------CCCEEEEeeCCCcEEEEECCCCcee---------------------EEeeecccCeEEEecCC--C
Q 008496 319 FSLKWNK-------KGDYLLTGSCDKTAIVWDVKTEEWK---------------------QQFEFHSGPTLDVDWRN--N 368 (563)
Q Consensus 319 ~~l~~~~-------~~~~l~s~s~D~~v~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~--~ 368 (563)
.|+.|.. .|++++.|..|..|.|||+.-...+ ..-..|...++.+.|.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5667743 3689999999999999997421100 01124566667777754 3
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
..+++++.|.+|.+||+.+++|..++..|.+.|.+++|+|. ...|++||.|+++++.|.+........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 56899999999999999999999999999999999999996 56789999999999999984322211112356788999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC--
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG-- 523 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~-- 523 (563)
|.|... +.++++..||+|+-+|+|+. +++++++.|..+|.+|++++.- .+|+|+|.|+.|++|++..-
T Consensus 337 w~~~se--------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 337 WDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ecCCCc--------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 988653 46788899999999999964 8999999999999999998864 57899999999999998643
Q ss_pred eeEEEEecC-CCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496 524 KIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 ~~~~~~~~~-~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~ 562 (563)
+.++..... +...+.+..|+- -.||+|+.++.++|||+-
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 333332222 234566777765 388889888889999963
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=166.87 Aligned_cols=276 Identities=16% Similarity=0.310 Sum_probs=196.1
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
..||.||+-|.+||.|..||.+.|||+.+.... .....|..+|++++||++|+.|+|++.|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-----------------RMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------hhhhccccceeEEEecCCCCEeeeecCCce
Confidence 679999999999999999999999998763311 112345678999999999999999999999
Q ss_pred EEEEEcC-CceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccC----e-EEEec-CCCc
Q 008496 298 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----T-LDVDW-RNNV 369 (563)
Q Consensus 298 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~-~~~~~-~~~~ 369 (563)
|.+||+. |.+...+ ...+||+...|+|... .++++-.+..-.+-++.... ...+...... + ....+ +...
T Consensus 89 i~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCC
Confidence 9999964 5555444 3578999999999654 34444445444444443311 1111111100 0 00112 2345
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCC------cee---eeecc-
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYV---HDLRE- 438 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~------~~~---~~~~~- 438 (563)
.+.++...|.+.+++..+.+.+..++-.. ..|..+.++..|+.|+.-+.|..||.|++..- ..+ +.++.
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 67888899999999998888877776544 67889999999999999999999999987521 111 11110
Q ss_pred -cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 439 -HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 439 -~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
....-.+++|+.+| .++.|+......++||....|.++..+.|.. .....+.|+|-...|++- ..|.|+
T Consensus 247 VNk~~Wk~ccfs~dg--------eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~ 317 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDG--------EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY 317 (405)
T ss_pred HhhhhhhheeecCCc--------cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence 01122445565554 3455656667889999999999999998876 567889999999988887 678999
Q ss_pred EEecC
Q 008496 517 IWSLK 521 (563)
Q Consensus 517 iw~~~ 521 (563)
||...
T Consensus 318 iw~~~ 322 (405)
T KOG1273|consen 318 IWAVV 322 (405)
T ss_pred EEEee
Confidence 99875
No 157
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=6e-21 Score=182.29 Aligned_cols=272 Identities=18% Similarity=0.288 Sum_probs=197.3
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
|..-|+||.|+.....+.+++.+..++-|++.+... ......+..+....|..+..... -.....|+.++
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s 82 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS 82 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence 555678999998887777766555566666644221 10100000111111111111110 01235688899
Q ss_pred CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
.||.+.+.+..++....+..|.++|.+-+|+|+|.-|++++.||.|++|. ++|-+..++.....++.++.|.++..-+.
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 99999999999998889999999999999999999999999999999998 45544444445566899999987655444
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 453 (563)
-...+.+++-.+..+..+..+++|.+-|.|++|++.+.++++|++|-..+|||.. +..+..-..|.-+|++++|.|+.
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~- 239 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK- 239 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence 4556677777777777777889999999999999999999999999999999965 44555667899999999999973
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.++.+|.+ ++|+= ....+.|..++|||||.-++.|...|.|.+=.
T Consensus 240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 45666643 34311 12356799999999999999999999876543
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3e-20 Score=174.63 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=211.3
Q ss_pred eEecCCCCceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC-C
Q 008496 209 TILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 285 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~ 285 (563)
.+.+-|...|++++|+|.. +++|+|..-|.|-+|++....... ..++ + ..+|+.+|.+|.|+| +
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~------d~v~-~------f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK------DGVY-L------FTPHSGPVSGLKFSPAN 246 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc------CceE-E------eccCCccccceEecCCC
Confidence 3456688999999999974 589999999999999995211100 0011 1 135678999999999 4
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeE---eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeecccCeE
Q 008496 286 GTLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTL 361 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~ 361 (563)
-..+++.++||+||+-|.++.... .+..-...+.++.|+.+...++.+..=|...+||+++..- ...+..|...+.
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 578999999999999998865433 2222344567788888888888888778999999987653 445566666665
Q ss_pred EEec--CCCceEEEEeCCCeEEEEEcCCCc----ceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC----CCc
Q 008496 362 DVDW--RNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----QDK 431 (563)
Q Consensus 362 ~~~~--~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~----~~~ 431 (563)
.++. .....+++++.|++.++||++.-. |+.....|...|+++.|||++-.|+|.+.|..|||||.. ...
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 5555 456789999999999999987532 445556799999999999998889999999999999973 222
Q ss_pred eeeeecccCC------CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEE-EEEcCCC
Q 008496 432 YVHDLREHSK------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYS-LAFSPTG 503 (563)
Q Consensus 432 ~~~~~~~~~~------~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~-l~~spdg 503 (563)
+...+. |.. ......|.|+. .++++|-.-..|-|+|-..++.+..+..-. ..|.+ ..|+|-+
T Consensus 407 p~~~I~-Hn~~t~RwlT~fKA~W~P~~---------~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 407 PLGTIP-HNNRTGRWLTPFKAAWDPDY---------NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred ccceee-ccCcccccccchhheeCCCc---------cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 222222 221 23445777754 378899998999999999999888764432 35555 4899998
Q ss_pred CEE-EEEeCCCcEEEEecC
Q 008496 504 EYL-ASGSLDKSMHIWSLK 521 (563)
Q Consensus 504 ~~l-asgs~dg~v~iw~~~ 521 (563)
..+ |.|+..|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 844 455567888888654
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=7.2e-18 Score=172.62 Aligned_cols=327 Identities=29% Similarity=0.577 Sum_probs=249.6
Q ss_pred eeEecCCC-CceEEEEE-CCCCC-EEEEeeC-CCcEEEEecCC-CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496 208 VTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (563)
Q Consensus 208 ~~~l~~h~-~~V~~~~~-sp~~~-~latgs~-D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 282 (563)
...+.++. ..+..+.+ ++++. .++..+. |+.+++|++.. .. .... ...+...|..++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~~----~~~~~~~v~~~~~ 163 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LIRT----LEGHSESVTSLAF 163 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EEEE----EecCcccEEEEEE
Confidence 34445533 36666666 88887 5555454 99999999864 11 0111 1234567889999
Q ss_pred CCCCCEEEEEeC-CCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeE-Eeeeccc
Q 008496 283 NGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSG 358 (563)
Q Consensus 283 s~~g~~l~sg~~-dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~ 358 (563)
+|++..+++++. |+.+++|+... .....+.+|...|.+++|+|++. .+++++.|+++++||...+.... .+..|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 999999999885 99999999874 66777888999999999999998 55666999999999988777777 5666665
Q ss_pred CeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 008496 359 PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (563)
Q Consensus 359 ~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~ 436 (563)
.. ...|..+ ..+++++.|+.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+.......
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 53 2245444 4677899999999999986664 5555688899999999998888888999999999999888766665
Q ss_pred c--ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCC
Q 008496 437 R--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLDK 513 (563)
Q Consensus 437 ~--~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las-gs~dg 513 (563)
. .|...+..+.| +.. ...+..++..|+.+++|++............ ..+..+.+++ ...+.. ++.++
T Consensus 323 ~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 323 TLKGHEGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred eecccCCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence 5 77778999998 522 0124444478899999999877733333322 2388999999 544444 78899
Q ss_pred cEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 514 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 514 ~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+.+|+............. ..+....+++++..++.+..+..+.+|+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 9999999988877776666 788999999999999998899999999864
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=181.41 Aligned_cols=285 Identities=22% Similarity=0.300 Sum_probs=199.6
Q ss_pred EEEEECCC---CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 219 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 219 ~~~~~sp~---~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
+++.|++. ..+||.+-.||.|.++|....... .....++.. ..|...|-.+.|-|....|++++.|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~lk~~----~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQLKKP----LAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhhccc----ccccceeEeeccCCCceeEEEccCC
Confidence 45677663 358999999999999997542211 000011111 2345679999999977889999999
Q ss_pred CeEEEEEcCCc-eeE--eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCce-------eEEeeec--------
Q 008496 296 GQARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-------KQQFEFH-------- 356 (563)
Q Consensus 296 g~i~vw~~~~~-~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~-------- 356 (563)
.++++||+.+. +.. .+.+|++.|.+++|.|.. ..|++|+.||.+.|||++-... ...+..|
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 99999998753 333 478999999999999976 4688999999999999864320 0011111
Q ss_pred ------------cc----CeEEEecCCCceEEEEeC-CCeEEEEEcCCCcc--------eeeecCC---CcceeEEEECC
Q 008496 357 ------------SG----PTLDVDWRNNVSFATSST-DNMIYVCKIGENRP--------IKTFAGH---QGEVNCVKWDP 408 (563)
Q Consensus 357 ------------~~----~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~--------~~~~~~h---~~~i~~~~~~~ 408 (563)
.. .|..+-+.++..+|+++. |+.|+|||++.... +..+.-| .-.+.++..+.
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 11 133456678888888887 99999999986532 2223333 22477888888
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc--eeeeecccCCCEEE--EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-
Q 008496 409 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYT--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL- 483 (563)
Q Consensus 409 ~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~--~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 483 (563)
.|.+|...+.|+.|.+|++.+.. ++..+.++...-.. -..+|++. +|++|+.|...++|.+.+.+.
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence 88877666669999999987543 23333333221111 12345543 799999999999999987554
Q ss_pred EEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 008496 484 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 484 ~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~ 523 (563)
...+.+|...|++++|.|.- .-+|+++.|.+++||++.++
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 55678999999999998753 45777799999999999764
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4e-20 Score=180.35 Aligned_cols=268 Identities=23% Similarity=0.349 Sum_probs=193.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCce-------eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE--eee
Q 008496 285 EGTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEF 355 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~ 355 (563)
...+|+.+..||.|.+++..... ......|.+.|+.+.|-|....|++++.|.++++||+.+..+... +..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 34689999999999999975321 234567999999999999777899999999999999999888766 788
Q ss_pred cccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCc--------------------c-------eeeecCCCcceeE---
Q 008496 356 HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------P-------IKTFAGHQGEVNC--- 403 (563)
Q Consensus 356 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~-------~~~~~~h~~~i~~--- 403 (563)
|.+.+-.+++. +...|++++.||.|.+||++... | +.....|.+.|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 88888777774 56789999999999999986432 1 1111234444544
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEeCCCCceeee--------eccc---CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008496 404 VKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDS 471 (563)
Q Consensus 404 ~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg 471 (563)
+-+..|...||+++. |+.|+|||++....... +..| .-.+.++.....|. .++|+|. |+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~ 293 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DN 293 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CC
Confidence 556678889999998 99999999986543221 1122 11234444433332 4566665 99
Q ss_pred eEEEEeCCCC--eEEEEecCCCCCEE--EEEEcCCCCEEEEEeCCCcEEEEecCCCee-EEEEecC-CCEEEEEEcCCC-
Q 008496 472 TVKLWDVELG--KLLYSLNGHREPVY--SLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGN-GGIFEVCWNKEG- 544 (563)
Q Consensus 472 ~i~iwd~~~~--~~~~~~~~h~~~i~--~l~~spdg~~lasgs~dg~v~iw~~~~~~~-~~~~~~~-~~i~~l~w~~~g- 544 (563)
+|++||+..- ..+..+.++...-. .-..|||+.+|++|+.|...+||.+.+-.. +..+.++ -.|+.++|.|.-
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 9999998753 33445555432211 224699999999999999999999986543 2223332 248899999854
Q ss_pred CEEEEEECCCeEEEEEe
Q 008496 545 DKIAACFANHTVCVLDF 561 (563)
Q Consensus 545 ~~la~~~~~~~v~v~~~ 561 (563)
..+|+|+.|-++.||++
T Consensus 374 t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRL 390 (720)
T ss_pred CCceeeccCcceEEEec
Confidence 57788899999999986
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.6e-21 Score=199.84 Aligned_cols=275 Identities=24% Similarity=0.447 Sum_probs=209.6
Q ss_pred EEEECCCCC-EEEEE----------eCCCeEEEEEcC---Cc--ee--EeeccCCCCEEEEEeCCCCCE----EEEeeCC
Q 008496 279 TLDWNGEGT-LLATG----------SYDGQARIWSTN---GD--LK--CTLSKHKGPIFSLKWNKKGDY----LLTGSCD 336 (563)
Q Consensus 279 ~l~~s~~g~-~l~sg----------~~dg~i~vw~~~---~~--~~--~~~~~h~~~V~~l~~~~~~~~----l~s~s~D 336 (563)
.++|+|.+. ++++| +.+.++-||..+ .. ++ ..+ .....-+.|+|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 468999886 55544 224455666543 11 11 111 12345678999988876 7788889
Q ss_pred CcEEEEECCCC------ceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeec--CCCcceeEEEE
Q 008496 337 KTAIVWDVKTE------EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKW 406 (563)
Q Consensus 337 ~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~~~~ 406 (563)
|.|.+||.... ..+.++..|.++|..+++.. ...+|+|+.||.|++||+.....-.++. .-.+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997542 34556778999999998864 4578999999999999997643222221 13467999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEeCCCCceeeeecccCC--CEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCC
Q 008496 407 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVEL 480 (563)
Q Consensus 407 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 480 (563)
+.. ...||+++.+|.+.|||++..+.+..+..+.. .+..+.|+|+... .|++++.| -.|.+||+|.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeecccc
Confidence 875 45689999999999999999988887776655 4678999998752 34444444 3699999985
Q ss_pred C-eEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCC-EEEEEECCCeE
Q 008496 481 G-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTV 556 (563)
Q Consensus 481 ~-~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v 556 (563)
. ..+..+.+|...|.++.|++.+ .+|+|++.|++|.+|+.++|+++..+.. ...++++.|.|..- .+|+++-+|.|
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 4 4567788999999999999976 8999999999999999999999998865 34689999999875 88889999999
Q ss_pred EEEEee
Q 008496 557 CVLDFR 562 (563)
Q Consensus 557 ~v~~~~ 562 (563)
.|+.+.
T Consensus 322 ~I~sl~ 327 (1049)
T KOG0307|consen 322 SIYSLQ 327 (1049)
T ss_pred eeeeee
Confidence 999874
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=176.30 Aligned_cols=275 Identities=19% Similarity=0.345 Sum_probs=203.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..|..++|-|||..|+.+.. ..+.+||++ |.+..++.+|+..|++++|+.+|+.++||++|+.|.+|+..-....+
T Consensus 13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-- 89 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-- 89 (1081)
T ss_pred cchheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--
Confidence 36899999999999888765 468899975 77889999999999999999999999999999999999865433322
Q ss_pred eecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 354 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
-.|...+.++.+.+- ..+++|+... .-+|...... +...+ ....+.+++|..||++|+.|-.||+|.|-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 235667777777654 3445554321 2234433222 11111 234688999999999999999999999876433222
Q ss_pred e--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496 433 V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 433 ~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs 510 (563)
+ ..--+...+|.+++|+|... +...-+++......++.++.+. |+.+..-+...-.-.|+++-|+|.|+..|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 2 22224678999999999753 1222378888999999998875 666553333333447899999999999999
Q ss_pred CCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 511 LDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 511 ~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.|+.+++|. +.|-.+.+... ...|+.++-.|.|+.+++|..||+++-||+
T Consensus 242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999996 45666666533 557999999999999999999999998875
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-19 Score=174.07 Aligned_cols=278 Identities=22% Similarity=0.341 Sum_probs=209.7
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCc
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~ 348 (563)
.+|.+.|.++...|.|.+|++|+.||++|||.+.+. .+.++ ...+.|.+++|+|.+.. +++++...++.|-+..-|.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 356788999999999999999999999999997644 33333 34568999999998754 4444445555555432221
Q ss_pred e-------------------------------------eEEeeecccCeEEEecCCC-ceEEEEe---CCCeEEEEEcCC
Q 008496 349 W-------------------------------------KQQFEFHSGPTLDVDWRNN-VSFATSS---TDNMIYVCKIGE 387 (563)
Q Consensus 349 ~-------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~i~~~~~~~ 387 (563)
. +...-.|..++..+.|+.. ..|++.. ....|.+.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 0111223445677888654 3444443 335688888877
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 467 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~ 467 (563)
.+....|+-..+.|.++.|+|...+|+.++. ..|||||+.....+..+......|.+++.+|.|. -|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g 625 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG 625 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence 6666666666778999999999999888876 4799999998888887777788899999999875 36779
Q ss_pred eCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC------Ce---eEEEEec-----C
Q 008496 468 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE------GK---IVKTYTG-----N 532 (563)
Q Consensus 468 s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~------~~---~~~~~~~-----~ 532 (563)
+.|+.+..+|+..+ +...++.-|...+++++|++--.++|+|+.||++.||.-.- .- .++.+.+ .
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999865 45567888999999999999999999999999999986321 11 2333433 3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 533 GGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 533 ~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
.+|.+..|+|.--+|.+++.||++++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 568999999999999999999999987
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=9.1e-20 Score=161.71 Aligned_cols=256 Identities=26% Similarity=0.427 Sum_probs=185.5
Q ss_pred eEecCCCCceEEEEECCC-CCEEEEeeC---C----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEE
Q 008496 209 TILEGHTSEVCACAWSPA-GSLLASGSG---D----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~-~~~latgs~---D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 280 (563)
.+|..|.++|..++-+|. .++|+|.-. | ..+.||.++..... .+...+..+......+.+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-------S~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-------SNSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-------cccchhhHhhcCCHHHhCceeeE
Confidence 356778899999999996 467777644 2 24789998753211 11111111111122334579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCcee--Eee-----ccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 281 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
.|.|++..+++-. |..|.+|+.+.... ..+ ..|+...++-+|+| +|+.+++. .|+++..||+++.....
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 9999999988765 88999999764322 211 23666788999998 67777664 58999999999764322
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCC-
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ- 429 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~- 429 (563)
.+ -.+|...|..+.|+|+.+ +||||++||.|||||.+.
T Consensus 208 sI----------------------------------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 208 SI----------------------------------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred ch----------------------------------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 11 135777788999999876 579999999999999975
Q ss_pred CceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----------------------------
Q 008496 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------------------------- 480 (563)
Q Consensus 430 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------------------------- 480 (563)
..++.++.+|...+.+++|.|... -++++|+.|..|.+|....
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 457889999999999999988643 3788999999999996431
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecC
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLK 521 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~ 521 (563)
...+.++..|...|++++||.-..++ |+-|.||+|.|=.+.
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01234566799999999998876664 788999999887765
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.2e-19 Score=166.59 Aligned_cols=293 Identities=21% Similarity=0.329 Sum_probs=195.3
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCc---CCCCCCCceEEEEEeeecccccCCCCeEEEEECCC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 285 (563)
..|..|...|++|.|+|+|.+||||+.+|.+.+|...+.... ..+...+....+.+... .+..+|..++|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr----~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR----GHRDDIYDLAWSPD 134 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec----ccccchhhhhccCC
Confidence 467889999999999999999999999999999987642110 00111111122233332 35688999999999
Q ss_pred CCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+.++++|+.|..+++||+. |.+...+..|...|..++|.|.++++++-+.|...+.+.+........... .++
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---~~m--- 208 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---DIM--- 208 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---eEe---
Confidence 9999999999999999986 678888999999999999999999999999999777776655443332221 000
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC----CCcE-----EEEeCC-CCceee
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTA-----KIWNMK-QDKYVH 434 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~----dg~i-----~iwd~~-~~~~~~ 434 (563)
.+-.+..+.-..+.+-..... ......++|+|+|.+|++.+. .+.+ .+++-+ ..+++.
T Consensus 209 ------~~~~~~~~e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~ 276 (434)
T KOG1009|consen 209 ------PAKAFNEREGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA 276 (434)
T ss_pred ------eecccCCCCcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence 000011110011111001111 112456889999999987542 2222 333322 223445
Q ss_pred eecccCCCEEEEEEccCCCC----C------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCC
Q 008496 435 DLREHSKEIYTIRWSPTGSG----T------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG 503 (563)
Q Consensus 435 ~~~~~~~~i~~~~~~p~~~~----~------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg 503 (563)
.+.....+...++++|--.. . ..| -.+++|.+.. ..|.|||.++..+++.+ +-|-.+|+.++||+||
T Consensus 277 ~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg 354 (434)
T KOG1009|consen 277 RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG 354 (434)
T ss_pred ecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCC
Confidence 55556667777777763210 0 011 1234555554 57999999987777665 4588899999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCee
Q 008496 504 EYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~ 525 (563)
.+|+..|.||...+-.++.+++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 9999999999888877766554
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.3e-20 Score=172.66 Aligned_cols=264 Identities=19% Similarity=0.363 Sum_probs=197.4
Q ss_pred ceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 217 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
.++.+.|+.... .+|+-++|..+++|.-.. +.. .+..+....+ ..-.|++......++++|+..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~~~--------~Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~ 100 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-KTP--------EVPRVRKLTG------DNAFCVACASQSLYEISGGQS 100 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccC-CCC--------ccceeecccc------chHHHHhhhhcceeeeccCcC
Confidence 488999987764 445556899999997432 110 0111111111 123444444455899999999
Q ss_pred CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496 296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 374 (563)
Q Consensus 296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (563)
+.|+|||...++.. .+..|++.|+++.++-...||++++..|.|.|..+.++.....|...
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------------------ 162 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------------------ 162 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------------------
Confidence 99999999866544 57889999999999999999999999999999988776533322211
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee-cccCCCEEEEEEccCC
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTG 452 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~ 452 (563)
....|.-+.|+|..++ |.+++++|.|.+||.....+++.+ ..|..+...|+|+|..
T Consensus 163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 0122446788887664 678999999999999888776544 5799999999999864
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEEec
Q 008496 453 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG 531 (563)
Q Consensus 453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~~~ 531 (563)
+.+|++.+.|..|.+||++..+....+. ...|..+++|+++|.+|+.|+..|.|..||++..+ .+.+...
T Consensus 221 --------e~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 221 --------EALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred --------cceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 3589999999999999999766665554 35689999999999999999999999999998654 4444433
Q ss_pred -CCCEEEEEEcCCC
Q 008496 532 -NGGIFEVCWNKEG 544 (563)
Q Consensus 532 -~~~i~~l~w~~~g 544 (563)
...|..++|.+.-
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 4569999998864
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=162.70 Aligned_cols=289 Identities=18% Similarity=0.231 Sum_probs=196.1
Q ss_pred cCCCceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEE
Q 008496 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (563)
Q Consensus 203 ~~~~~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 282 (563)
+|+.+..+|++|.+.|+++.|-.+++ |.+|..-|.+++|.+.+..... ++. ..+...|+.+.-
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------------~~r---~~g~~~it~lq~ 64 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------------LIR---LFGRLFITNLQS 64 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------------hhh---hhccceeeceee
Confidence 46667789999999999999987766 8899999999999997643211 111 012456777777
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC-----C---EEEEeeCCCc--EEEEECCCCceeEE
Q 008496 283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-----D---YLLTGSCDKT--AIVWDVKTEEWKQQ 352 (563)
Q Consensus 283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~-----~---~l~s~s~D~~--v~iwd~~~~~~~~~ 352 (563)
-|+ ..+.+-+.|+.+.+|+...... ...|.-.+.++.|.+.. + .++.--..+. +.+-|......++.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI 141 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence 776 5677889999999999876322 22244444555554321 1 1111111110 11111111101110
Q ss_pred e----eecccCeEEEecCCC----ceEEEEeCCCeEEEEEcCCC----------cceeeecCCCcceeEEEECCCCCEEE
Q 008496 353 F----EFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSLLA 414 (563)
Q Consensus 353 ~----~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~i~~~~~~~~~~~la 414 (563)
. ....+.+++.+|.-. ..++++-.+|.+.+|++..+ +.+.....|..+|.++.+.+.-..=+
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence 0 112345666665422 23467778999999999886 33344557899999999987655556
Q ss_pred EEeCCCcEEEEeCCCCc--e-e-eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496 415 SCSDDVTAKIWNMKQDK--Y-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~--~-~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 490 (563)
+|+.+..+..|+++... + + ..+.-....+..+...|+++ ++|+++.|+.||+|+.++.+.+..++-|
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhhhh
Confidence 78888889999886442 1 1 11111233466677778775 8999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 491 ~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
+..|++++|+||...+|+||.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.5e-19 Score=180.52 Aligned_cols=241 Identities=21% Similarity=0.353 Sum_probs=182.4
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCcee-------EeeccCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEE
Q 008496 274 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWD 343 (563)
Q Consensus 274 ~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~-------~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd 343 (563)
...|+|++|+| +..+++.|.++|+|.+||..+... .....|..+|+.+.|..+-. -|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999 678899999999999999764321 23456999999999976544 499999999999998
Q ss_pred CCCCcee-E-----Eee------ecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCc--------ceeeecCCCcce
Q 008496 344 VKTEEWK-Q-----QFE------FHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV 401 (563)
Q Consensus 344 ~~~~~~~-~-----~~~------~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~i 401 (563)
++..... . ... .....+..+.+ .+...|+.|+..|.|+.+...... ++..+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7643221 0 000 01112344444 466789999999999985543322 234566788999
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 402 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||.-. .+++++..||.|.|||+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence 999999987655444449999999988 6677777777888899999999754 4899999999999999874
Q ss_pred C--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 481 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 481 ~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
. ..+.+..-+....+.+.|+++|+.|+.|...|.+++|++..
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3 34445544556677888999999999999999999999864
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=187.84 Aligned_cols=281 Identities=26% Similarity=0.454 Sum_probs=212.5
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~ 287 (563)
++.|.||...|+|+.|...|.++.||+.|..++||...++.+. . ...+|+..|+.++.+.+..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------------A----s~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------------A----SCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------------c----cCCCCccccchhccchhhh
Confidence 4567899999999999999999999999999999997654322 1 1234678899999999999
Q ss_pred EEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC
Q 008496 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (563)
Q Consensus 288 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 366 (563)
+++++++|..|++|.+. +..+..+.+|+++|++++|+|-. +.+.||++++||.+-... ...
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~----~y~---------- 307 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR----IYV---------- 307 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccccc----ccC----------
Confidence 99999999999999965 66777899999999999999954 778999999999861100 000
Q ss_pred CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEE
Q 008496 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (563)
Q Consensus 367 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 446 (563)
..|.. +. ....+.++.|..++.-++|++.|+..+.|.+....+ +...+.-+
T Consensus 308 ---------------------prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~ 358 (1113)
T KOG0644|consen 308 ---------------------PRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV 358 (1113)
T ss_pred ---------------------CCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence 00100 00 113355666777788889999999998887542211 11111111
Q ss_pred EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCee
Q 008496 447 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 447 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~l-asgs~dg~v~iw~~~~~~~ 525 (563)
..+.+.. .+.+++-.+..+.+|++.+|..++.+.+|...++.+.++|-...+ .+++.||...|||+-.|..
T Consensus 359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 1111111 245666678889999999999999999999999999999976655 4899999999999999987
Q ss_pred EEEEe-cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 526 VKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 526 ~~~~~-~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
++.|. +++.+.+-.||+||..++..-.=|.+.|+.
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 77664 567788999999999998887667777664
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-17 Score=167.89 Aligned_cols=278 Identities=22% Similarity=0.387 Sum_probs=197.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-----ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
|...++|.++||.++++++|..||.|.+|.--+ .....+.-|..+|.++.|+++|.+|+||+..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 444589999999999999999999999997544 233467789999999999999999999999999999999998
Q ss_pred ceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc---eeeec--------CCCcceeEEEECCCCCEEEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFA--------GHQGEVNCVKWDPTGSLLAS 415 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~--------~h~~~i~~~~~~~~~~~las 415 (563)
+ .+-+..-.+++..+.+.++ ..++.+..|+.|.+........ +..+. +..+-.+.++++|..+.++-
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 4444555667888877654 5567778899988876633211 11111 12445678899997778888
Q ss_pred EeCCCcEEEEeCCCCceeeeecc-----cC------CCEEEEEEccCCCCCCCCCCcEEEEEEe--------CC--CeEE
Q 008496 416 CSDDVTAKIWNMKQDKYVHDLRE-----HS------KEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STVK 474 (563)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~-----~~------~~i~~~~~~p~~~~~~~~~~~~~l~s~s--------~d--g~i~ 474 (563)
++..|.|.+||+-+...+..+.. +. -.++++..+-.|. +++|.- .| -.+|
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEEE
Confidence 99999999999988776655431 11 2344444444332 344432 23 3578
Q ss_pred EEeCCCCeEEEE-----ecCCCCCEEEEEEc-CCCC-EEEEEeCCCcEEEEecCC------Ce------eEEEEecCCCE
Q 008496 475 LWDVELGKLLYS-----LNGHREPVYSLAFS-PTGE-YLASGSLDKSMHIWSLKE------GK------IVKTYTGNGGI 535 (563)
Q Consensus 475 iwd~~~~~~~~~-----~~~h~~~i~~l~~s-pdg~-~lasgs~dg~v~iw~~~~------~~------~~~~~~~~~~i 535 (563)
+|-......-+. ...|...+...+|. |... .++++|.||.++||-+.+ +. .+..| .+..+
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i 512 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPI 512 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcc
Confidence 886543332222 24687776666664 4444 899999999999999832 21 12223 35678
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 536 FEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 536 ~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..++|+.||+.||+++.| +|.|||.+
T Consensus 513 ~a~~fs~dGslla~s~~~-~Itiwd~~ 538 (792)
T KOG1963|consen 513 TALCFSQDGSLLAVSFDD-TITIWDYD 538 (792)
T ss_pred cchhhcCCCcEEEEecCC-EEEEecCC
Confidence 899999999999888765 89999975
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3e-19 Score=172.27 Aligned_cols=223 Identities=25% Similarity=0.425 Sum_probs=166.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 343 (563)
+...|..++|.|....|++|+.||.+.+|+++. ....+|.+|.+||.|++..+++.++++|+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 456788999999999999999999999999721 24568999999999999999999999999999999998
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+.... ..+..+. .......+.||.+.|+.+++|+....|++||.||++|
T Consensus 373 ~p~n~--dp~ds~d-----------------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 373 LPPNQ--DPDDSYD-----------------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred cCCCC--CcccccC-----------------------------cchhccceeccccceeeeeecccccceeeecCCceEE
Confidence 75210 0000000 0112346789999999999999999999999999999
Q ss_pred EEeCCCCceeeeec---ccCCC-----------------------------EEEEEEccCCC------------CCCCCC
Q 008496 424 IWNMKQDKYVHDLR---EHSKE-----------------------------IYTIRWSPTGS------------GTNNPN 459 (563)
Q Consensus 424 iwd~~~~~~~~~~~---~~~~~-----------------------------i~~~~~~p~~~------------~~~~~~ 459 (563)
+|......+ .+|. .|.-+ +..+.+-+... ...+|+
T Consensus 422 ~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 422 LWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT 500 (577)
T ss_pred eeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence 998765443 1111 01000 00011111000 001122
Q ss_pred CcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE
Q 008496 460 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 528 (563)
Q Consensus 460 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~ 528 (563)
. -+..++..|+.|+++|..+++.++....|...++++++.|+|.+|++|+.||.|++|.+....++..
T Consensus 501 ~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 501 A-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred C-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 2 2577889999999999999999999999999999999999999999999999999999875554433
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.1e-18 Score=157.86 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=207.3
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
+-+.+|++.|+++.||.++++||+||.|..+++|.+...-... ...|+.+ .+ ..|...|.||+|....++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~------~~--~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--TPKPIGV------ME--HPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--CCCCcee------cc--CccccceEEEEEccCCee
Confidence 4567999999999999999999999999999999975421111 0111111 11 134477999999999999
Q ss_pred EEEEeCCCeEEEEEcCCceeEeeccCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce-eEEeeec--ccCeEE
Q 008496 289 LATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFH--SGPTLD 362 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~--~~~~~~ 362 (563)
+.+|+.+|+|.+-|+..+...-...|. +.|+.+.-+|..+.|++.+.++.|.+||.+.... ...+... ......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 999999999999998876555444554 4999999999999999999999999999876541 1111111 112233
Q ss_pred EecC--CCceEEEEeCCCeEEEEEcCCC-cceeeecCC---Cc---ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Q 008496 363 VDWR--NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGH---QG---EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (563)
Q Consensus 363 ~~~~--~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h---~~---~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~ 433 (563)
+.|. ....+++.+..+.+-+|+++.. .++..+.+. .. .-.++.|+|+|+.|.+--.-..-.+||+.+.++.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 3333 3356677777788889998754 233332222 11 2357889999999887766555667887765442
Q ss_pred -eeecccC-------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------C-------------e
Q 008496 434 -HDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------K 482 (563)
Q Consensus 434 -~~~~~~~-------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~-------------~ 482 (563)
..+ .|. ..+.+++|.-+ .-+++||.+-.|++|.+.. | +
T Consensus 280 V~k~-D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 280 VLKS-DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eEec-cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 222 222 23455565443 2489999999999998642 1 2
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
.+..+++|..-++.+.|+|...+|++.+-.+.++||.-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 345688999999999999999999999999999999754
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1e-17 Score=149.01 Aligned_cols=275 Identities=20% Similarity=0.366 Sum_probs=197.2
Q ss_pred CCeEEEEECC---CCCEEEEEeCC----CeEEEEEcC---CceeEe-eccCCCCEEEEEeCCCCC----EEEEeeCCCcE
Q 008496 275 KDVTTLDWNG---EGTLLATGSYD----GQARIWSTN---GDLKCT-LSKHKGPIFSLKWNKKGD----YLLTGSCDKTA 339 (563)
Q Consensus 275 ~~V~~l~~s~---~g~~l~sg~~d----g~i~vw~~~---~~~~~~-~~~h~~~V~~l~~~~~~~----~l~s~s~D~~v 339 (563)
-++.++.|+. ...+|+.|+.. +.|.|-..+ +..+.. -..|.-|++.+-|.|+.. .|++.+ +..+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCeE
Confidence 4577888883 34578888753 556665443 222221 136899999999999863 233333 3489
Q ss_pred EEEECCCC--ceeE--Ee-----eecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEE
Q 008496 340 IVWDVKTE--EWKQ--QF-----EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVK 405 (563)
Q Consensus 340 ~iwd~~~~--~~~~--~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~ 405 (563)
|+|.+... .... .+ ..+..|..+++|. +...+.+++-|.+-.+|++..+.. -..+-+|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99987632 2111 11 1234577889996 456788999999999999987633 345678999999999
Q ss_pred ECCCC-CEEEEEeCCCcEEEEeCCCCceeeeec---ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCC
Q 008496 406 WDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL 480 (563)
Q Consensus 406 ~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~ 480 (563)
|...+ ..||+++.||.+|+||++......-+. ....+...++|++... .++|+-.+| ..|.|.|++.
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecC
Confidence 99855 578999999999999998654322221 2244667778876542 477776666 4689999986
Q ss_pred C-eEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCe------eEEEEecCCCEEEEEEcC-CCCEEEEEE
Q 008496 481 G-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACF 551 (563)
Q Consensus 481 ~-~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw~~~~~~------~~~~~~~~~~i~~l~w~~-~g~~la~~~ 551 (563)
. ..+..+.+|...|+.|+|.|. +..|+|||.|.++.|||+..-- .+-.|...+.|..+.|++ .++.+|.|+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 4 568899999999999999997 5789999999999999997421 234455667899999996 678999998
Q ss_pred CCCeEEEE
Q 008496 552 ANHTVCVL 559 (563)
Q Consensus 552 ~~~~v~v~ 559 (563)
.+ .+.|+
T Consensus 356 ~k-kleiL 362 (364)
T KOG0290|consen 356 GK-KLEIL 362 (364)
T ss_pred cC-eeeEE
Confidence 76 44443
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=4e-18 Score=157.52 Aligned_cols=208 Identities=20% Similarity=0.457 Sum_probs=169.2
Q ss_pred eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCC
Q 008496 310 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 388 (563)
.+.+|+++|..++|+|-+ +.|+|||.|.+|.||.+..+.+... ..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence 567999999999999955 5688999999999999865432111 12
Q ss_pred cceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496 389 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 467 (563)
Q Consensus 389 ~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~ 467 (563)
.|+..+.||...|--++|+|.- +.|+|++.|.+|.||+..++..+.++. |...|+++.|+.+|. +|++.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt 191 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT 191 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence 5778899999999999999974 678999999999999999999888877 999999999999986 79999
Q ss_pred eCCCeEEEEeCCCCeEEEEecCCCCC-EEEEEEcCCCCEEEEEe---CCCcEEEEecCCCe---eEEEEecCCCEEEEEE
Q 008496 468 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGS---LDKSMHIWSLKEGK---IVKTYTGNGGIFEVCW 540 (563)
Q Consensus 468 s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~spdg~~lasgs---~dg~v~iw~~~~~~---~~~~~~~~~~i~~l~w 540 (563)
+.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||- .+.++-+||..+-. ...++....+|.--=|
T Consensus 192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 99999999999999999988888653 34567888888444442 46789999986543 4556666777877789
Q ss_pred cCCCCEEEEE-ECCCeEEEEEe
Q 008496 541 NKEGDKIAAC-FANHTVCVLDF 561 (563)
Q Consensus 541 ~~~g~~la~~-~~~~~v~v~~~ 561 (563)
++|.+.|..| -+|+.|+-|.+
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEe
Confidence 9999988765 45788887765
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=150.74 Aligned_cols=235 Identities=21% Similarity=0.334 Sum_probs=177.2
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCCc------------eeEEeeec-ccCeEEEecC--------CCceEEEEeC
Q 008496 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE------------WKQQFEFH-SGPTLDVDWR--------NNVSFATSST 376 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~ 376 (563)
..+++|+|+|..|++-+.|..+.+|++.... ....+... ...+++.+|- ....|++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3568999999999999999999999874321 11122222 2346777774 2356889999
Q ss_pred CCeEEEEEcCCCcceeeecC--CCcc---eeEEEECCCCCEEEEEeCCCcEEEEeC-CCCce--eeeeccc-----CCCE
Q 008496 377 DNMIYVCKIGENRPIKTFAG--HQGE---VNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--VHDLREH-----SKEI 443 (563)
Q Consensus 377 d~~i~~~~~~~~~~~~~~~~--h~~~---i~~~~~~~~~~~las~s~dg~i~iwd~-~~~~~--~~~~~~~-----~~~i 443 (563)
+.-|++|+.-+++....+.+ |..+ ..+++|+|||..|..| ...+||++|+ +.++. +.....+ .+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999988876666554 4333 3589999999998655 6679999998 54442 2222223 5668
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCC
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKE 522 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg~v~iw~~~~ 522 (563)
.+++|+|... ..++.|+.-..+-|+.-..+.+++.+.+|.+.|+.+.|.+||+.|.+|+. |-.|..||++.
T Consensus 211 sc~a~sP~~~--------~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 211 SCFAFSPMDS--------KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeccCCCC--------cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 8899998754 26899999999999998889999999999999999999999999999874 67899999986
Q ss_pred Ce-eEEEEe-----cCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 523 GK-IVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 523 ~~-~~~~~~-----~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
-+ ++..+. .+..| -+...|+|++||.|..+|.|.|||++
T Consensus 283 ~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecC
Confidence 43 222222 22333 23457899999999999999999986
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=7.1e-18 Score=152.07 Aligned_cols=232 Identities=24% Similarity=0.402 Sum_probs=182.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCCce
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEW 349 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~ 349 (563)
.+|+|.+|++|++.+|.+-.+..+.||...+. ...++..|...|+++.|+|..+.|++|+.|+.-.+|.. ..+++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 57999999999999999999999999987653 45688999999999999999999999999999999987 44444
Q ss_pred eEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 350 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
.. ...+..++..++++.|+|.++.||+||.-..|.||-+..
T Consensus 91 kp---------------------------------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 91 KP---------------------------------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred cc---------------------------------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 33 333445778899999999999999999999999998765
Q ss_pred Cce--e--eeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEe
Q 008496 430 DKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSL 487 (563)
Q Consensus 430 ~~~--~--~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~ 487 (563)
..- + +.-+.+...|+++.|.|++. +|+.||.|+..|+|..-- |+++.++
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 431 1 11234567899999999864 899999999999996421 2333344
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe-eEEEE-ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~-~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
....+.|..+.|+|+|..||-.+.|..|.+=|..... .+.+. ...-+..++.|-.+...+++|++-+
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~ 271 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG 271 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence 3455789999999999999999999999998876543 22222 2234567889988888888887633
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.1e-17 Score=166.57 Aligned_cols=293 Identities=19% Similarity=0.285 Sum_probs=203.2
Q ss_pred CCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 213 ~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
.|+-.++|.++||.++++|+|..||.|.+|.=.... .. . ....+-| -|...|++++|+++|.+|++|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~-----~-~t~t~lH------WH~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DD-----S-ETCTLLH------WHHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc-cc-----c-ccceEEE------ecccccceeEEecCCceEeec
Confidence 477778999999999999999999999999632200 00 0 0011111 245779999999999999999
Q ss_pred eCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC-------------
Q 008496 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP------------- 359 (563)
Q Consensus 293 ~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------------- 359 (563)
|..|.+-+|......+..++.-.++|..+.++|++.+.+....|+.|.+-...+......+.....+
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 9999999999887667788899999999999999999999999999999877655544333322211
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec-----CC------CcceeEEEECCCCCEEEEEe--------CCC
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GH------QGEVNCVKWDPTGSLLASCS--------DDV 420 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h------~~~i~~~~~~~~~~~las~s--------~dg 420 (563)
...++. .....+..+..+.|..|++-+...+..+. -+ .-.+++++.+..|.+++|.- .||
T Consensus 350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 122222 23456667778889899887765544332 11 22467788888899988862 343
Q ss_pred --cEEEEeCCCCceee----e-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------C----eE
Q 008496 421 --TAKIWNMKQDKYVH----D-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------G----KL 483 (563)
Q Consensus 421 --~i~iwd~~~~~~~~----~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~----~~ 483 (563)
.+|+|-.+....-. . ...|...+...++.+..+. ...++++.||.++||-+.. . .|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-------~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-------VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-------ceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 46788765433211 1 1346666666666554321 2678999999999997732 2 22
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CeeEE
Q 008496 484 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVK 527 (563)
Q Consensus 484 ~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-~~~~~ 527 (563)
...-.-|..++++++||.||..|| .|.|++|.|||..+ ..+..
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred eeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc
Confidence 222123788999999999997666 56788999999987 44433
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.2e-17 Score=148.35 Aligned_cols=244 Identities=21% Similarity=0.390 Sum_probs=181.2
Q ss_pred EeeccCCCCEEEEEeCCCCCEEE-EeeCC-------CcEEEEECCCC---------ceeEEee-ecccCeEEEecCCCce
Q 008496 309 CTLSKHKGPIFSLKWNKKGDYLL-TGSCD-------KTAIVWDVKTE---------EWKQQFE-FHSGPTLDVDWRNNVS 370 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~~~~l~-s~s~D-------~~v~iwd~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~ 370 (563)
..|..|.+.|+.|+-+|-...++ |+..+ ..+.||.+... +++..+. .+.+.+.++.|.++..
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35677889999999999776554 44442 24679987432 1222222 2334678899988766
Q ss_pred EEEEeCCCeEEEEEcCCCcc-eeee-----cCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCC
Q 008496 371 FATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSK 441 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~ 441 (563)
-+++-.|+.|.+|++.+... +..+ .+|....++-+|+| +|+.+++. .|++++.||+++.+....+. +|..
T Consensus 137 klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 137 KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence 66666799999999987654 2222 24566788999998 67787765 47899999999888776664 6888
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWS 519 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw~ 519 (563)
.+..+.|.|+ .+.+|++|+.||.|||||.+.- ..+.++.+|.-.|+++.|+|. .++|.+||.|..|.+|.
T Consensus 216 ~vrdlDfNpn--------kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 216 RVRDLDFNPN--------KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred eeeeccCCCC--------ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 8999988775 4579999999999999999864 568899999999999999996 57889999999999997
Q ss_pred cCCCe-----------------------------eEEEEec-CCCEEEEEEcCCCCEEEEE-ECCCeEEEEEe
Q 008496 520 LKEGK-----------------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVLDF 561 (563)
Q Consensus 520 ~~~~~-----------------------------~~~~~~~-~~~i~~l~w~~~g~~la~~-~~~~~v~v~~~ 561 (563)
...-. ++.+|.. ...|++++|+.-.-.+.++ +-||++.|=++
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 64211 1223333 3579999999987766555 66999887655
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=3.8e-16 Score=153.26 Aligned_cols=219 Identities=19% Similarity=0.300 Sum_probs=152.9
Q ss_pred ceeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEE------------Eeee-------
Q 008496 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL------------KHVK------- 267 (563)
Q Consensus 207 ~~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~------------~~~~------- 267 (563)
...+|+||++.|+|++|+.+|+++|+|+.|..+.+|.-.-...........+.-..+ ..+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 356899999999999999999999999999999999753211111111111111000 0000
Q ss_pred -cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec---cCCCCEEEEEeCCCC-----CEEEEeeCCCc
Q 008496 268 -GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDKT 338 (563)
Q Consensus 268 -~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~~ 338 (563)
-.....+..|.+++|..||++|+.|-.||+|.+-+..|..+..+. +..++|++++|+|.. ..++...+..+
T Consensus 125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 000122456889999999999999999999999998887665554 477899999999964 46778888888
Q ss_pred EEEEECCCCceeEEeeecccCeEEEec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
+.++.+... .+..-..-.-...++.+ .+...+..++.|+.+.++... +..+.++......|..++..|+++.++.|+
T Consensus 205 LSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 205 LSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred eEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 888876432 22211111112334444 455566788889988888653 334455555667899999999999999999
Q ss_pred CCCcEEEEeC
Q 008496 418 DDVTAKIWNM 427 (563)
Q Consensus 418 ~dg~i~iwd~ 427 (563)
.||+|-.|++
T Consensus 283 qDGTiACyNl 292 (1081)
T KOG1538|consen 283 QDGTIACYNL 292 (1081)
T ss_pred ccCeeehhhh
Confidence 9999999986
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1e-17 Score=160.32 Aligned_cols=262 Identities=18% Similarity=0.328 Sum_probs=186.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEE-EEEe-------CCCCCEEEEeeCCCcEEEEEC
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF-SLKW-------NKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~-~l~~-------~~~~~~l~s~s~D~~v~iwd~ 344 (563)
+..-|.|+.|+.....+.+++.+-.+.-|+........+.-...-|. .+.. -.....|+.++.||.+.+-+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~- 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN- 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence 34557799999887776665555444445543322211111111111 0000 11235688899999998886
Q ss_pred CCCceeEEeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 345 KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+.+++.+....|.+.+.+..|..+ ..+++++.||.|.+|.... ....++......|.|++|.|+++-++-|-. +.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecC-CeEE
Confidence 566777788889999999999765 5688999999999998643 222233345568999999999877665543 3455
Q ss_pred EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
|=.+.....+-..++|.+-|.++.|+|... ++++|+.|-..+|||.. |..++.-..|.-||++++|+||
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-
Confidence 555555555567789999999999999764 89999999999999976 7888888889999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
+.++.||.. ++++=. ...+.|+.++||+||..++.|.+.|.+.+-
T Consensus 239 ~~~~v~S~n-t~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TARFSS----------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eeeecC----------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 666766654 333111 124679999999999999999999987653
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=137.56 Aligned_cols=268 Identities=20% Similarity=0.302 Sum_probs=181.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcC----------Cce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN----------GDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----------~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
.|..-+|+|.+++|+.|..+|.|.+..++ |+. ....++|.+||+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 35566899999999999999999999753 222 23458999999999998 34667665 699998865
Q ss_pred CCCc----eeE----Eeeeccc--C---eEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC
Q 008496 345 KTEE----WKQ----QFEFHSG--P---TLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 410 (563)
Q Consensus 345 ~~~~----~~~----~~~~~~~--~---~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 410 (563)
+... ++. +...+.+ + +..+-.. ....++.++.|+.++-||+..++..++|+||+..|.++.-....
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 4321 111 1122221 1 2222111 23455556699999999999999999999999999999985555
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeccc----------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 411 SLLASCSDDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
..+.||++||++||||.++.+.+..+... ...|.+++-+. -.|++| ....+.+|+++.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------dWlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------DWLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------ceEEec-CCCceeEEeccC
Confidence 66789999999999999999988765422 12344444322 155544 456799999998
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCC-EEEEEECCCeEEE
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVCV 558 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~-~la~~~~~~~v~v 558 (563)
.++...+. -..++..+.|-.| .+++++..+.|.-|.+. |.+-...+. ....++.+|+..-- .|.+++....+.|
T Consensus 237 se~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 237 SESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred CCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 87766554 2356788888554 67778877889888874 333333222 34567888887664 4433333335655
Q ss_pred E-Eee
Q 008496 559 L-DFR 562 (563)
Q Consensus 559 ~-~~~ 562 (563)
+ |||
T Consensus 313 ~~~~~ 317 (325)
T KOG0649|consen 313 LKDFR 317 (325)
T ss_pred eeccc
Confidence 5 554
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.6e-17 Score=169.24 Aligned_cols=288 Identities=21% Similarity=0.326 Sum_probs=205.0
Q ss_pred cCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CCCEE
Q 008496 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLL 289 (563)
Q Consensus 212 ~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~l 289 (563)
.+....-..+.|+|-...++++...-.|++||...++...+...+ ......|+.+.+-. |..++
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~--------------~~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG--------------AFPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC--------------CCCCCccceeeeecccchhhe
Confidence 333344567889999888999887889999999877643322221 12245688887754 56789
Q ss_pred EEEeCCCeEEEEEcCC------ceeEee---cc----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 290 ATGSYDGQARIWSTNG------DLKCTL---SK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 290 ~sg~~dg~i~vw~~~~------~~~~~~---~~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
++|+.||.||||+-.. +++... .+ -.+.-.-+.|.....+|++++.-+.|+|||+....+...+...
T Consensus 1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 9999999999997421 122211 11 1222244678887778887777889999999988777665544
Q ss_pred ccC-eE--EEecCCCceEEEEeCCCeEEEEEcCCC---cceeeecCCCcc--eeEEEECCCCCE-EEEEeCCCcEEEEeC
Q 008496 357 SGP-TL--DVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGE--VNCVKWDPTGSL-LASCSDDVTAKIWNM 427 (563)
Q Consensus 357 ~~~-~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~--i~~~~~~~~~~~-las~s~dg~i~iwd~ 427 (563)
... +. ..+......++++..||.|++||.+.. .++..++.|+.. |..+.+.+.|-- |++||.||.|++||+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 332 22 223345678899999999999998754 357888899887 999999886644 899999999999999
Q ss_pred CCCce--eeeecccC--C-CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCEE
Q 008496 428 KQDKY--VHDLREHS--K-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPVY 495 (563)
Q Consensus 428 ~~~~~--~~~~~~~~--~-~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~i~ 495 (563)
+.... ..++..|- + ..+++..++... ++|+|+. +.|+||++. |+.+..++. ..+.+.
T Consensus 1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred ccCcccccceeeeccccCccceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcc
Confidence 87422 12222332 2 477777766543 7899988 999999986 444433322 235689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 496 SLAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 496 ~l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
|++|+|-.-.||+|+.|.+|.||...+..
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999999999999887543
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.2e-18 Score=159.27 Aligned_cols=160 Identities=26% Similarity=0.524 Sum_probs=136.9
Q ss_pred eeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------ceeeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 392 KTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 392 ~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
-.+.||++.|..++|+|- ...|||||+|.+|.||.+-.+ .++..+.+|...|-.++|+|... .+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NV 146 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NV 146 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hh
Confidence 356799999999999995 467899999999999997543 45678889999999999999754 37
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC--EEEEEEc
Q 008496 464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWN 541 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~--i~~l~w~ 541 (563)
|+|++.|.+|.|||+.+|+.+.++. |..-|++++|+.||.+|+|.+.|+.|+|||.++++++..-..+.+ ..-+-|-
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 9999999999999999999999988 999999999999999999999999999999999999877644433 3456788
Q ss_pred CCCCEEEEEEC---CCeEEEEE
Q 008496 542 KEGDKIAACFA---NHTVCVLD 560 (563)
Q Consensus 542 ~~g~~la~~~~---~~~v~v~~ 560 (563)
.+|+.+.+|++ +.++++||
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred ccCceeeeccccccccceeccC
Confidence 89997777765 45677776
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=6e-18 Score=152.93 Aligned_cols=267 Identities=20% Similarity=0.364 Sum_probs=188.0
Q ss_pred CCCceEEEEECCCC----CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CE
Q 008496 214 HTSEVCACAWSPAG----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL 288 (563)
Q Consensus 214 h~~~V~~~~~sp~~----~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~ 288 (563)
|.-..+.|+|+-+. .+||.||.-|.|||.|+..+... +....|...|..+.+.|+. ++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence 66678899998753 48999999999999998765421 2233456789999999964 79
Q ss_pred EEEEeCCCeEEEEEcCCc-eeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 289 LATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+++|+.|..||+|+.... .+..+ .+|.+.|.++.|+++|.+|++|+.|.++++|++...+....++.. +.
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~ 224 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT 224 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence 999999999999998754 34443 579999999999999999999999999999999876654443321 11
Q ss_pred cCCCceEEEEeCCCeEEEE-EcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---------
Q 008496 365 WRNNVSFATSSTDNMIYVC-KIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY--------- 432 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~-~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~--------- 432 (563)
|.++. +-+-+ .....-|.. +-.-|...|.|+.|- |.+++|=|-++.|..|... -...
T Consensus 225 ~~~~~---------t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 225 YSPNK---------TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred cCCCC---------ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 21111 00000 000000111 223488899999996 6889999999999999862 1111
Q ss_pred ----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEecC--CCCCEEEEEEcCCCC
Q 008496 433 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE 504 (563)
Q Consensus 433 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~--h~~~i~~l~~spdg~ 504 (563)
+..+.-....|.-+.|+-+.. +.+||.|...|.|.+||+++.... .++.. ....|...+||.||.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 223334455666666654432 126889999999999999876542 12221 235689999999999
Q ss_pred EEEEEeCCCcEEEEecC
Q 008496 505 YLASGSLDKSMHIWSLK 521 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~ 521 (563)
+|+....|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999864
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=2e-16 Score=160.58 Aligned_cols=257 Identities=21% Similarity=0.306 Sum_probs=185.4
Q ss_pred CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcee--E----EeeecccCeEEEecCC
Q 008496 296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN 367 (563)
Q Consensus 296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~ 367 (563)
+.+.+|+....... ..-.-..+|++++|+|.. +.++.|..+|.|.+||++.+... . ....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899997654222 122346789999999965 56677788999999999876542 1 2235677899999963
Q ss_pred C---ceEEEEeCCCeEEEEEcCCCc-ceeee-----c------CCCcceeEEEECCCC-CEEEEEeCCCcEEEEe---CC
Q 008496 368 N---VSFATSSTDNMIYVCKIGENR-PIKTF-----A------GHQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK 428 (563)
Q Consensus 368 ~---~~~~~~~~d~~i~~~~~~~~~-~~~~~-----~------~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd---~~ 428 (563)
+ ..|++++.||.|..|+++.-. |+... . .-...+++++|.+.. ..++.|+++|.|.--+ ..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 2 459999999999999876432 11111 1 112357889998754 4688999999886522 22
Q ss_pred CCc-----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCEEEEEEcCC
Q 008496 429 QDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 429 ~~~-----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~spd 502 (563)
... .+..+..|.++|+++.++|-+. .++++++ |.+|+||.-. ...++..+..+...|++++|||.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 221 1335567889999999998764 2455555 9999999987 66777888878888999999998
Q ss_pred C-CEEEEEeCCCcEEEEecCCCe--eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 503 G-EYLASGSLDKSMHIWSLKEGK--IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 503 g-~~lasgs~dg~v~iw~~~~~~--~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
. ..+|++..||.|.|||+.... .+.+..- ....+.+.|++.|+.||+|..+|++.++++
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 7 466788889999999996532 2222221 334567899999999999999999999987
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.5e-15 Score=150.60 Aligned_cols=272 Identities=14% Similarity=0.228 Sum_probs=171.1
Q ss_pred EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEcCC--c
Q 008496 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNG--D 306 (563)
Q Consensus 230 latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~--~ 306 (563)
+++...|+.|++|++.+... + ..++... .......++++|++++|++++ .++.|.+|+.+. .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~--------l--~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~ 69 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGA--------L--TLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA 69 (330)
T ss_pred EEEcCCCCCEEEEEECCCCc--------e--eeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence 34446789999999853211 0 1111111 123466789999999987765 478899998753 2
Q ss_pred eeEe-eccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEE
Q 008496 307 LKCT-LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384 (563)
Q Consensus 307 ~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 384 (563)
+... .....+....+.|+|++++|++++. ++.|.+|++.+.....
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~--------------------------------- 116 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV--------------------------------- 116 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC---------------------------------
Confidence 2211 1112335578999999999887764 7889999875321100
Q ss_pred cCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeee-----ec-ccCCCEEEEEEccCCCCCCC
Q 008496 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNN 457 (563)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~~p~~~~~~~ 457 (563)
..+..+.+ .....+++++|++++++ +...++.|.+||+++...+.. .. ........+.|+|++.
T Consensus 117 ----~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~---- 187 (330)
T PRK11028 117 ----APIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ---- 187 (330)
T ss_pred ----CceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC----
Confidence 00011111 12345688999998875 455679999999976432211 11 1123346788888875
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC--C--eEEEEecCC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC---
Q 008496 458 PNQQLILASASFDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG--- 523 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~~--~--~~~~~~~~h------~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~--- 523 (563)
.++++...+++|.+|++.. + +.+..+..+ ......+.|+|||++|+++. .++.|.+|++...
T Consensus 188 ----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 188 ----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred ----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 3334444589999999973 3 233333221 11234689999999998875 4789999998543
Q ss_pred -eeEEEEecCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 524 -KIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 524 -~~~~~~~~~~~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
+++...........++++|||++|+++.. +++|.||++.
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 23333333334568899999999998765 7899999763
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=145.36 Aligned_cols=265 Identities=16% Similarity=0.265 Sum_probs=185.8
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeeecc---cCe
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPT 360 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~ 360 (563)
+.+|++..+|.|++||.. ++....+.+|...+..++|.. ..+.+++|+.||+|++||+++...+..+.... .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 578899999999999975 567778999999999999977 56789999999999999999876554443332 234
Q ss_pred EEEecC-CCceEEEE----eCCCeEEEEEcCCCcc-eeee-cCCCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCc-
Q 008496 361 LDVDWR-NNVSFATS----STDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK- 431 (563)
Q Consensus 361 ~~~~~~-~~~~~~~~----~~d~~i~~~~~~~~~~-~~~~-~~h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~- 431 (563)
.+++-. +...++++ ..+..+.+||++..+. +..+ ..|...|++++|+|.. ++|+|||-||-+.|||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 455544 23334443 2456789999987764 5544 5799999999999964 689999999999999987653
Q ss_pred --eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------CCEEEE
Q 008496 432 --YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPVYSL 497 (563)
Q Consensus 432 --~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i~~l 497 (563)
.+.....|...|.++.|...+.. -|.+-+...+..+|+++.+.+...+.... .-+-.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~- 271 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN- 271 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence 22233457778999999876631 36677889999999998877554432210 00111
Q ss_pred EEcC-CCCEEEEEeC-CCcEEEEecC---CCe---eEEEEecC--CCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 498 AFSP-TGEYLASGSL-DKSMHIWSLK---EGK---IVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 498 ~~sp-dg~~lasgs~-dg~v~iw~~~---~~~---~~~~~~~~--~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
..+| ++..++.++. -+...++-+. ++. .+..+.+. .-|.++.|+..++.|.+|+.||.+.+|-
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 1223 4455665554 4555555443 232 22333331 2356889999999999999999999996
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=5.3e-16 Score=138.13 Aligned_cols=271 Identities=21% Similarity=0.357 Sum_probs=191.0
Q ss_pred ceEEEEECC--C-CCEEEEeeC----CCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC---
Q 008496 217 EVCACAWSP--A-GSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--- 286 (563)
Q Consensus 217 ~V~~~~~sp--~-~~~latgs~----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--- 286 (563)
.++++.||. + +.+||.|+- ...|.|-.+..... .........+..+++.+-|.|+.
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------ELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------ceeccCCCCCCCCccceEecCCcccc
Confidence 478899984 3 458888872 34454444331100 00011112456789999999975
Q ss_pred --CEEEEEeCCCeEEEEEcCC---ce--eEee-----ccCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCCc---ee
Q 008496 287 --TLLATGSYDGQARIWSTNG---DL--KCTL-----SKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE---WK 350 (563)
Q Consensus 287 --~~l~sg~~dg~i~vw~~~~---~~--~~~~-----~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~---~~ 350 (563)
.+|||.+ -.+|+|.... .. ...+ ..+.+|+++..|+.- -+++.++|-|.++.|||++++. +.
T Consensus 112 ~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 112 YPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred Ccchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 4566544 5899998752 11 1122 345679999999974 4678899999999999998863 46
Q ss_pred EEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCccee-eecCC--CcceeEEEECCC-CCEEEEEeC-CCcEE
Q 008496 351 QQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIK-TFAGH--QGEVNCVKWDPT-GSLLASCSD-DVTAK 423 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~h--~~~i~~~~~~~~-~~~las~s~-dg~i~ 423 (563)
.++-.|...+.++.|.. ...|++++.||.++++|++....-. .+... ..+...++|++. -+++||-.. ...|.
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 78888999999999976 5689999999999999998644322 22222 345677889875 456777554 45688
Q ss_pred EEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------EEEEecCCCCCEEE
Q 008496 424 IWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------LLYSLNGHREPVYS 496 (563)
Q Consensus 424 iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~i~~ 496 (563)
|-|++.. .++..++.|.+.|..|+|.|... ..|++|+.|..+.|||+...- .+.... -...|+.
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~--------~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNq 340 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSS--------SHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ 340 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCC--------ceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeee
Confidence 9999854 46788999999999999999765 368999999999999986421 112222 3457999
Q ss_pred EEEcCC-CCEEEEEeCC
Q 008496 497 LAFSPT-GEYLASGSLD 512 (563)
Q Consensus 497 l~~spd-g~~lasgs~d 512 (563)
+.|+|. +.+|+.+...
T Consensus 341 i~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeecccCCCEEEEEecC
Confidence 999964 6788877643
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=4e-17 Score=143.36 Aligned_cols=276 Identities=15% Similarity=0.227 Sum_probs=187.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeec-cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
+++..|+++.|..+++ |.+|..-|.+.+|...+. ....+. .|...|+.+.--|+ ..+.+-+.|..+.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 4567899999998876 889999999999998764 334455 57788999998887 5789999999999999876554
Q ss_pred eEEeeecccCeEEEecC-------CCc--eEEEEeCCC--eEEEEEcCCCcceeee----cCCCcceeEEEECCC-CC--
Q 008496 350 KQQFEFHSGPTLDVDWR-------NNV--SFATSSTDN--MIYVCKIGENRPIKTF----AGHQGEVNCVKWDPT-GS-- 411 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~d~--~i~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~-~~-- 411 (563)
+..-. -++..+.|- ... ........+ .+.+-|.+....+... .+..+.+.|..|..+ ++
T Consensus 90 i~i~S---i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 90 ISIHS---IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred EEEee---eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 43211 111111110 000 011000000 0111121111111111 133456777775432 32
Q ss_pred EEEEEeCCCcEEEEeCCCCc----------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008496 412 LLASCSDDVTAKIWNMKQDK----------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL- 480 (563)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~----------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~- 480 (563)
+++.|-++|.+.+||+.++. .+.....|.+++.++.+.+... .=++|+.+..+..|++..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~---------rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD---------RGISGGADDKLVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc---------CCcCCCccccceeeeeccc
Confidence 46778889999999998873 3334456889999999986432 124677777888888753
Q ss_pred -CeEE--EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 481 -GKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 481 -~~~~--~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
+.+. .++.-..-.|..+..-||++.+||++.|++|+||+.++...+..++- .++|++++|+|+...+|+++.|++|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 2221 12222234588899999999999999999999999999988776653 4679999999999999999999999
Q ss_pred EEEEe
Q 008496 557 CVLDF 561 (563)
Q Consensus 557 ~v~~~ 561 (563)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=5.5e-18 Score=159.76 Aligned_cols=227 Identities=21% Similarity=0.343 Sum_probs=191.0
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC
Q 008496 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 398 (563)
Q Consensus 319 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~ 398 (563)
+.+.++.+|.+|+.|+..|.|..+|..++.+...+.. ...+.++.|..+..|.+....+.+++||-... .+.-++. .
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~-~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKR-H 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhh-c
Confidence 6789999999999999999999999999987765543 34577888887777777778889999986432 2333332 2
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
..|..+.|-|..-+|+++++.|.++--|+.+++.+..++.-.+.+..++-.|-.. ++-.|...|+|.+|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP 280 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence 4688899999999999999999999999999999999988888888888777654 7889999999999999
Q ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 479 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 479 ~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
...+.+..+..|.++|.+|++.++|+|+||.|.|..|+|||++.-..+.++....+...+++|..| .||++.++ .|.|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD-HVQI 358 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC-eeee
Confidence 998888888899999999999999999999999999999999988877777666667889998887 66777655 5777
Q ss_pred E
Q 008496 559 L 559 (563)
Q Consensus 559 ~ 559 (563)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 7
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.1e-14 Score=134.32 Aligned_cols=233 Identities=22% Similarity=0.348 Sum_probs=171.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQ 351 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~ 351 (563)
..+..+.|+.+...|..|+.||. +++..+...++. .......|..+-|+.. .++..+.+ +.+++.+.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 45777789999999999999985 566654322211 1111223444556543 44444443 458999888777666
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC---CCcceeEEEECCCCCEEEE--EeCCCcEEEEe
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLAS--CSDDVTAKIWN 426 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~las--~s~dg~i~iwd 426 (563)
.+.+ ..+++++....+..++.- . ..|++||+..-+++.++.. +...+.++.+++.+.++|- ....|.|.|||
T Consensus 83 e~~f-pt~IL~VrmNr~RLvV~L-e-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFF-PTSILAVRMNRKRLVVCL-E-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEec-CCceEEEEEccceEEEEE-c-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 5544 335777776555444433 2 2399999998888776643 4445667777777778875 33478999999
Q ss_pred CCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecCCC--CCEEEEEEcCCC
Q 008496 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHR--EPVYSLAFSPTG 503 (563)
Q Consensus 427 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~--~~i~~l~~spdg 503 (563)
..+-+++..+.+|.+++-+++|+|+|. +||++|..|+ ||++.+.+|+.+++++.-. ..|++++||||+
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~~G~---------llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSPDGT---------LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred cccceeeeEEEecCCceeEEEECCCCC---------EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 999999999999999999999999996 8999999997 7999999999999986432 358999999999
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 008496 504 EYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~ 522 (563)
++|++.|..++|+||.+.+
T Consensus 231 ~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CeEEEecCCCeEEEEEecc
Confidence 9999999999999999864
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.5e-16 Score=162.59 Aligned_cols=211 Identities=20% Similarity=0.236 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 371 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (563)
+..|++||.+|.....+..|...+.+.+|+|+|++|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------- 242 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence 468999999887667778888999999999999999887654 368889887654211
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEE--eCCCCceeeeecccCCCEEEEEE
Q 008496 372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW 448 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~ 448 (563)
+..+.+|. ..++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|
T Consensus 243 -------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 243 -------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW 299 (429)
T ss_pred -------------------EecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence 11122332 3579999999887764 68876666 555554 3455666677888999
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
+|+|. .+++++..+|..+||++... .....+ .+.. ++++|||||++|+.++.++ +.+||+.+++...
T Consensus 300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 99985 24455556788888876532 222223 3433 5678999999999888765 6669999887543
Q ss_pred EEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 528 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 528 ~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.... .....++|+|+|+.|++++.++.+.+|.+
T Consensus 368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3222 23356889999999999988888877764
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.6e-16 Score=160.90 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=144.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEE--ECCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE 347 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iw--d~~~~ 347 (563)
...+...+|||||+.|+.++.+ ..|++|+..+.....+....+....++|+|+|++|+.++ .+|.+.|| |+.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 3468899999999999988764 369999987543323332333345689999999888764 57766555 43332
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEe
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN 426 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd 426 (563)
. ...+..+...+.++.|+|||+.|+.++ .++..+||+
T Consensus 283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 2 122333455677899999999877655 578889998
Q ss_pred CCCCc-eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCE
Q 008496 427 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 427 ~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~ 505 (563)
+.... ....+ .+.. +...|+|+|. .|+..+.++ +.+||+.+++.......+ ...+++|+|||++
T Consensus 321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM 385 (429)
T ss_pred EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence 65322 22222 3333 4577888875 455555555 556999888754322222 2456889999999
Q ss_pred EEEEeCCCcEEEEec--CCCeeEEEEec-CCCEEEEEEcCCC
Q 008496 506 LASGSLDKSMHIWSL--KEGKIVKTYTG-NGGIFEVCWNKEG 544 (563)
Q Consensus 506 lasgs~dg~v~iw~~--~~~~~~~~~~~-~~~i~~l~w~~~g 544 (563)
|+.++.++.+.+|.+ .+|+.++.+.. .+.+.+++|+|--
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 999999998888876 35777777765 3457889999853
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.4e-16 Score=160.32 Aligned_cols=276 Identities=20% Similarity=0.287 Sum_probs=200.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCC---CCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC---
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHK---GPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT--- 346 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~--- 346 (563)
+-..+.|+|=...++++...-.|+|||-+ +.....|..+. ..|+.+.+-. +...+++|+.||.|+||+-..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34567788877889998888899999965 44444454332 4578887753 446789999999999997432
Q ss_pred --CceeEEeee-------cccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcceeeec-CCCcceeEEEECC-CCCEEE
Q 008496 347 --EEWKQQFEF-------HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP-TGSLLA 414 (563)
Q Consensus 347 --~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~~~~~~-~~~~la 414 (563)
.+.+..+.. ..+...-++|... ..+.+++.-..|++||......+..+. +...-|+++.-+. .|+.|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 223332221 1122356788644 456666667889999998877666554 3344567765543 469999
Q ss_pred EEeCCCcEEEEeCCCC---ceeeeecccCCC--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEe
Q 008496 415 SCSDDVTAKIWNMKQD---KYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSL 487 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~---~~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 487 (563)
.|-.||.+|+||.+.. ..+...+.|+.. |..+.+.+.|-. -|++|+.||.|++||++..... .++
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCccccccee
Confidence 9999999999998743 346677888887 999999887753 4899999999999999974222 233
Q ss_pred cCCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec--------CCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 488 NGHR--E-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 488 ~~h~--~-~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~--------~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
..|. + ..+++..+++...+|+|+. +.|+||++.. +.+..+.. .+.+.+|+|+|---.||+|+.|.+|
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 3343 3 4899999999999999999 8999999864 33333322 3457899999999999999999999
Q ss_pred EEEEe
Q 008496 557 CVLDF 561 (563)
Q Consensus 557 ~v~~~ 561 (563)
.||..
T Consensus 1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred EEeec
Confidence 99964
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4e-15 Score=136.50 Aligned_cols=275 Identities=24% Similarity=0.406 Sum_probs=179.7
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CEEEEEeCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~~d 295 (563)
.+..++||+.-.-+|.+..|-+||+|+-... . ...+++ .....|+||+|-|.+ .-|+.|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~----------pt~Lks------~sQrnvtclawRPlsaselavgCr- 161 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C----------PTKLKS------VSQRNVTCLAWRPLSASELAVGCR- 161 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-C----------Cceecc------hhhcceeEEEeccCCcceeeeeec-
Confidence 4678899997778899999999999985431 1 111222 224679999999964 55666665
Q ss_pred CeEEEEEcCCceeE---------------eeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeecccC
Q 008496 296 GQARIWSTNGDLKC---------------TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGP 359 (563)
Q Consensus 296 g~i~vw~~~~~~~~---------------~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~ 359 (563)
+-|.+|..+..... .-.+| .+|++++|+++|..+++++- |..|+|||+.++..+.
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-------- 232 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-------- 232 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------
Confidence 56899986432111 12344 68999999999999999876 5679999998875332
Q ss_pred eEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 360 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
+.. -.-+.++-+.||||+.+|..++-|+..++|+...........-.
T Consensus 233 -------------------------------L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg 279 (445)
T KOG2139|consen 233 -------------------------------LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG 279 (445)
T ss_pred -------------------------------ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence 111 12345778999999999999999999999965433222222234
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C--------e---EEEEe------cC---CCCCEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPVY 495 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~i~ 495 (563)
.+.|.+.+|+|.|+ .+|.+++.. -++|.+.. + + .+..+ .+ ..+++.
T Consensus 280 sgrvqtacWspcGs--------fLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 280 SGRVQTACWSPCGS--------FLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred CCceeeeeecCCCC--------EEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence 45899999999986 355555533 33343211 0 0 11111 11 135789
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEecCCCeeEEEE----ecCCCEEEEEEcC---CCCEEEEEECCCeEEEEE
Q 008496 496 SLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVLD 560 (563)
Q Consensus 496 ~l~~spdg~~lasgs~d--------g~v~iw~~~~~~~~~~~----~~~~~i~~l~w~~---~g~~la~~~~~~~v~v~~ 560 (563)
+++|.|.|.+||+--.. ..|.+||.+.--.+... .+....--++|+| +|..|.+|-+.|.+.-|+
T Consensus 350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 99999999999975432 34677777654332221 1122233455555 678999998888887776
Q ss_pred e
Q 008496 561 F 561 (563)
Q Consensus 561 ~ 561 (563)
+
T Consensus 430 l 430 (445)
T KOG2139|consen 430 L 430 (445)
T ss_pred e
Confidence 5
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=131.35 Aligned_cols=213 Identities=16% Similarity=0.271 Sum_probs=161.2
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----------ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 386 (563)
.|++-+|+|.+++|++|+.+|+|.+..+... ..+-.++.|.+|++.+.+.+. |..++.||.|+-|...
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeeh
Confidence 4666789999999999999999999987531 223345778899999988743 4455667999888764
Q ss_pred CCc------ceee--ecCC-----CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496 387 ENR------PIKT--FAGH-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (563)
Q Consensus 387 ~~~------~~~~--~~~h-----~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 453 (563)
+.. +.-. ..-| --+|+++-..|..+-++.++.|+.+..||+.+++...++++|+.-+.++.-.....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 321 1100 0112 23689999999888888888999999999999999999999999999998632221
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC---------C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 454 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---------H-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------h-~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
-++||+.||++||||+++++++..+.. | ...|-+++-+. .+|+.|+.- .+.+|+++..
T Consensus 170 ---------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgGp-~lslwhLrss 237 (325)
T KOG0649|consen 170 ---------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGGP-KLSLWHLRSS 237 (325)
T ss_pred ---------ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecCCC-ceeEEeccCC
Confidence 478999999999999999998876642 2 23466666544 488877754 5999999999
Q ss_pred eeEEEEecCCCEEEEEEcCC
Q 008496 524 KIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 524 ~~~~~~~~~~~i~~l~w~~~ 543 (563)
+...++.-...+-.+.|..|
T Consensus 238 e~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 238 ESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred CceEEEecccceeEeeeecc
Confidence 99999887777878877544
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=6.4e-15 Score=135.74 Aligned_cols=235 Identities=19% Similarity=0.281 Sum_probs=159.0
Q ss_pred CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC-CeEEEEEcCCCcceeee
Q 008496 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTF 394 (563)
Q Consensus 316 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~ 394 (563)
..+..+.|+.+...|..|+.||. +++.................+...-|......+.+-.+ ..++++..+....+-.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence 34566678988888888888874 66655432210000111112333333333222222222 34666666554444332
Q ss_pred cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEE-Ee-CCC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDS 471 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s-~s-~dg 471 (563)
. ....|.++.++. +.|+.+=.+. |.|||++..+.++++..- ..+---++++|+.. ..+||- ++ ..|
T Consensus 85 ~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-------n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 85 F-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-------NCYLAYPGSTTSG 153 (391)
T ss_pred e-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-------CceEEecCCCCCc
Confidence 2 245688888864 4455565554 999999999999887643 22222334444322 124443 22 358
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCeeEEEEecC---CCEEEEEEcCCCCEE
Q 008496 472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKI 547 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-v~iw~~~~~~~~~~~~~~---~~i~~l~w~~~g~~l 547 (563)
.|.|||+.+-+.+..+..|++++-+++|||+|.+|||||..|+ |+||.+.+|+.+..|.-. ..|++|+|+||+++|
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999999999999999999999999999999999999999997 699999999999888643 358899999999999
Q ss_pred EEEECCCeEEEEEee
Q 008496 548 AACFANHTVCVLDFR 562 (563)
Q Consensus 548 a~~~~~~~v~v~~~~ 562 (563)
++.+..++|+||.+.
T Consensus 234 ~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 234 AASSNTETVHIFKLE 248 (391)
T ss_pred EEecCCCeEEEEEec
Confidence 999999999999774
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=151.57 Aligned_cols=290 Identities=22% Similarity=0.355 Sum_probs=209.1
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC--CC
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 286 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g 286 (563)
..|.+|.+.|+.+.|+..|.+|+|||.|..+.+||+..+....... .+|...|-...|-| +.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------------SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------------SGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------------cccccchhhhhccCCCCC
Confidence 4578999999999999999999999999999999997654321111 11223333334444 34
Q ss_pred CEEEEEeCCCeEEEEEcC--Cce--eEeeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeec--ccC
Q 008496 287 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP 359 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~ 359 (563)
+.+++++.||.+|+=... +.. ...+..|.++|..++.-|... -|++++.|+.+.-.|++.......+... ..+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 678999999999987643 322 345678999999999998774 5899999999999999876544433221 111
Q ss_pred ------eEEEecCCCceEEEEeCCCeEEEEEcCCC------cceeeecCCC------cceeEEEECCCCCEEEEEeCCCc
Q 008496 360 ------TLDVDWRNNVSFATSSTDNMIYVCKIGEN------RPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT 421 (563)
Q Consensus 360 ------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------~~~~~~~~h~------~~i~~~~~~~~~~~las~s~dg~ 421 (563)
.+.++..+...|++++.|..+++|+.+.- .++..|..|. -.|+|++|+.++.-|.+.-.|--
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 23344556678999999999999987532 2344443332 35899999988776666777778
Q ss_pred EEEEeCC--CC----------ceeee-ecccCC--CEEEEEE-ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008496 422 AKIWNMK--QD----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 485 (563)
Q Consensus 422 i~iwd~~--~~----------~~~~~-~~~~~~--~i~~~~~-~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 485 (563)
|.++.-. .+ .++.. +++|.. .|..+-| -|.. .+++|||.-|.|.||+-.+++.+.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence 8888432 12 12222 556643 3444443 2222 378999999999999999999988
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
.+.+...-|+||-=+|--..||+.|-|..|+||...+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88887778999999999999999999999999987543
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.4e-15 Score=137.93 Aligned_cols=242 Identities=19% Similarity=0.368 Sum_probs=163.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeecc-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
.++..++|++.-..++++..|-.||+|+.+......+.. ....|++++|.|.+..-++.+.-+-|.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~-- 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-- 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc--
Confidence 457889999988889999999999999987765555532 35679999999987655555556779999764221000
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCce
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKY 432 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~ 432 (563)
. .++... .....+....|| ..|++++|++||..+++++. |..|.|||..++..
T Consensus 177 -----r-------------------~~~~~s-~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 177 -----R-------------------NIRMMS-THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred -----c-------------------cccccc-ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 0 000000 000122334556 68999999999999999886 67899999998877
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
+.-.....+.+.-+.|+|++. +|..+..|+..++|+... ..+..-.. -.+.|...+|+|+|++|.-+..
T Consensus 231 ~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc
Confidence 654434556788999999986 788899999999995432 22222222 2348999999999988754332
Q ss_pred CCcEEEEecC----CCe-----------eEEEE------ec----CCCEEEEEEcCCCCEEEEEECCCe
Q 008496 512 DKSMHIWSLK----EGK-----------IVKTY------TG----NGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 512 dg~v~iw~~~----~~~-----------~~~~~------~~----~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
. .=.+|.+. ... ++..+ .+ .+++-.++|+|.|.+||+.+..+.
T Consensus 301 g-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 301 G-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred C-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 2 22344432 110 11111 11 245678999999999999987654
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=7.1e-16 Score=144.51 Aligned_cols=196 Identities=24% Similarity=0.320 Sum_probs=141.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEE-cCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 278 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~dg~i~vw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
.+++|+++|..+++|+.||.+|||+ ++-........|.+.|.+|.|+|+|+.|++.+.| ..+||+.+++..++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 7899999999999999999999999 5555556678899999999999999999999999 9999999988433322100
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-----CEEEEEeCCCcEEEEeCCCCc
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-----~~las~s~dg~i~iwd~~~~~ 431 (563)
+ .+. .+..+.|+.|+ .+++....-+.|+.|++....
T Consensus 227 -----~----k~~------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 227 -----S----KDE------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred -----c----cch------------------------------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 0 000 11122333332 122222233344444332111
Q ss_pred -----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCEEEEEEcCCCCE
Q 008496 432 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY 505 (563)
Q Consensus 432 -----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~spdg~~ 505 (563)
...........|.+++.+++|. ++|.|+.||.|-|++..+-++++.. ..|...|+.+.|+||.++
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 1111222335789999999986 8999999999999999888776654 579999999999999999
Q ss_pred EEEEeCCCcEEEEecCC
Q 008496 506 LASGSLDKSMHIWSLKE 522 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~ 522 (563)
+++-+.|.+..|..+.-
T Consensus 339 ~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 339 LASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccccCCceeEEEEee
Confidence 99999999888887653
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=7.9e-15 Score=137.56 Aligned_cols=194 Identities=22% Similarity=0.298 Sum_probs=143.1
Q ss_pred EEecCC-CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--
Q 008496 362 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-- 438 (563)
Q Consensus 362 ~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-- 438 (563)
.+.+.. +..+++++.||++++|+.....++.....|.++|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 344544 4778999999999999988888888888999999999999999999999999 999999999866554432
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEE-EeCCCeEEEEeCCCCeE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILAS-ASFDSTVKLWDVELGKL-----LYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-----~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
.......++|+.++.. ..+++++ ...-+.|+.||+....- ......-...|++++.|+||+++|.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 2223445666655432 1123333 33345666666532111 11111123469999999999999999999
Q ss_pred CcEEEEecCCCeeEEEEec--CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 513 KSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~--~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
|.|.|+++.+-++++-.+. .+-|++|.|+||.+.++.-+++.+.+|.-+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999999998777666543 345899999999999998888888887755
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=7.1e-14 Score=138.54 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=154.1
Q ss_pred CceEEEEECCCCCEEEEee-CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 216 SEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
+....++++|++++|+.++ .++.|.+|++..... +. ..... ........++|+|+|++|+++++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--------l~--~~~~~-----~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--------LT--FAAES-----PLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--------eE--Eeeee-----cCCCCceEEEECCCCCEEEEEEc
Confidence 4466789999999887664 588899999862110 00 01111 01124568999999999888775
Q ss_pred -CCeEEEEEcC--Cce---eEeeccCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 295 -DGQARIWSTN--GDL---KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 295 -dg~i~vw~~~--~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
++.+.+|+.+ +.. ...+. +.....+++++|++++++++ ..++.|.+||+.+........
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~------------- 165 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE------------- 165 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------------
Confidence 7899999875 222 22222 22345778899999988654 456899999987532111000
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCC--Cc--eeeeecccC--
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--DK--YVHDLREHS-- 440 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~--~~--~~~~~~~~~-- 440 (563)
...+.... ......++|+|+|++++++.. +++|.+|+++. +. .+..+..+.
T Consensus 166 --------------------~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 166 --------------------PAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred --------------------CCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 00000001 122457899999999877766 99999999873 22 233332211
Q ss_pred ----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC---CCCEEEEEEcCCCCEEEEEeC-C
Q 008496 441 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSL-D 512 (563)
Q Consensus 441 ----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~l~~spdg~~lasgs~-d 512 (563)
.....+.++|++. .++++...++.|.+|++........+.++ ......++|+|||++|++++. +
T Consensus 224 ~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 224 FSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred CCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 1123477778764 34444455789999998643221122222 123457899999999988775 8
Q ss_pred CcEEEEecC
Q 008496 513 KSMHIWSLK 521 (563)
Q Consensus 513 g~v~iw~~~ 521 (563)
++|.+|++.
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 999999874
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5.5e-15 Score=133.63 Aligned_cols=237 Identities=20% Similarity=0.323 Sum_probs=171.3
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
..+|+|.+|++|++.+|.+-....+.||.......- . .......|...|+.++|+|..+.|++|+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----------~---~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----------E---PAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----------e---eceehhhhCcceeEEeecCCCCceeEccC
Confidence 367999999999999999999999999986543311 0 01122346788999999999999999999
Q ss_pred CCeEEEEEc-CCc---eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496 295 DGQARIWST-NGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (563)
Q Consensus 295 dg~i~vw~~-~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (563)
|...+||.. .+. ....+..|...++++.|+|.++.|++||.-+.|.||=.+... +
T Consensus 76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------d------ 134 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------D------ 134 (361)
T ss_pred CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------------c------
Confidence 999999997 432 334567899999999999999999999999988888543221 0
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-----C-------------Cce
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-----Q-------------DKY 432 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-----~-------------~~~ 432 (563)
|-+. +.+ -+.+.+.|++++|+|++-+||.||.|+..||+..- . +..
T Consensus 135 ------------WWVs--Khi--kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 135 ------------WWVS--KHI--KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred ------------eehh--hhh--CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 1010 001 12245689999999999999999999999999741 0 112
Q ss_pred eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 433 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
..++....+.+..+.|+|.|. .|+-.+.|.++.+-|..... .+..+..-.-|..++.|-.+.. ++.++.
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~ 268 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY 268 (361)
T ss_pred HHhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence 223334457799999999886 68899999999999987654 3333333336777777754433 333444
Q ss_pred C
Q 008496 512 D 512 (563)
Q Consensus 512 d 512 (563)
|
T Consensus 269 ~ 269 (361)
T KOG1523|consen 269 D 269 (361)
T ss_pred C
Confidence 4
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.6e-13 Score=122.84 Aligned_cols=235 Identities=23% Similarity=0.348 Sum_probs=160.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCcee-EeeccCCCCEEEEEeCCCCCEE-EEeeCC------CcEEEEECCCC
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTE 347 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~v~iwd~~~~ 347 (563)
...+++|+.|...+++|..+| .|||+.+.-.. .....+.+.+.-+..--..++| +.|+.+ +.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 356699999999988887665 68998764111 1111222222111111123343 344443 57999996666
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCC--cceeEEEECCCCCEEEE-EeCCCcEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAK 423 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~i~~~~~~~~~~~las-~s~dg~i~ 423 (563)
.++..+.+ ..++.++..+.+...+. ..+.|++|... ..+.+..+..-. ....+++-+.+..+||. |-.-|.|+
T Consensus 86 ~~i~el~f-~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSF-NSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEe-ccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 66665554 34677777766654443 56789999887 334444443222 12334433333445554 44578999
Q ss_pred EEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecC--CCCCEEEEE
Q 008496 424 IWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNG--HREPVYSLA 498 (563)
Q Consensus 424 iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~i~~l~ 498 (563)
|-|+...+. ...+.+|...|.+++.+-+|. ++||+|..|+ |||||..+|..+.+++. ....|++++
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 999876655 467789999999999998886 8999999998 89999999999999853 235699999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~~ 523 (563)
|||++.+||++|..|+|+||.++..
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999998763
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.2e-14 Score=131.74 Aligned_cols=303 Identities=16% Similarity=0.299 Sum_probs=194.9
Q ss_pred CceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-EEEEEe
Q 008496 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 293 (563)
Q Consensus 216 ~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~ 293 (563)
+.|.-+.|..+.- .|.....|+.|.+|++....- +. .......++..++|||||+ +|.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------~c--kIdeg~agls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------YC--KIDEGQAGLSSISWSPDGRHILLTSE 111 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------EE--EeccCCCcceeeeECCCcceEeeeec
Confidence 3466688998865 455567899999999863221 11 1123356789999999994 566677
Q ss_pred CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCc---EEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT---AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (563)
.+-.|.+|++..+....+.-.+..+.+++|+|+|++.+.++.-.. +.|..-..-.....|........++.|.++..
T Consensus 112 F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 899999999987766666655667789999999999887765321 11111111122333433334455667765532
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecCCC-cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-------------
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL------------- 436 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~------------- 436 (563)
.+.+|+.--.-.+..+ |. -.+..++|+|.+++|+.|+.|+.+||-+--+.++...+
T Consensus 192 --------~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 192 --------WLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred --------EEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 3445553222222222 22 25778999999999999999999988543222211110
Q ss_pred -----------------------ccc------------------------------CCCEEEEEEccCCCCCCCCCCcEE
Q 008496 437 -----------------------REH------------------------------SKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 437 -----------------------~~~------------------------------~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
.+| ...+..++|+++. .+
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds---------~y 332 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS---------TY 332 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc---------eE
Confidence 000 0011223333332 25
Q ss_pred EEEEe--CCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEc
Q 008496 464 LASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 541 (563)
Q Consensus 464 l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~ 541 (563)
+++-. .-+.+-+||+++.+....+. ...+|....|.|....|+.+....++++|....-..+..-...-.|.+++|+
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~ 411 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWL 411 (447)
T ss_pred EeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEec
Confidence 55542 33578999998766544443 4568999999999999998888888999998765555554434468899999
Q ss_pred CCCCEEEEEECCCe
Q 008496 542 KEGDKIAACFANHT 555 (563)
Q Consensus 542 ~~g~~la~~~~~~~ 555 (563)
-+|..++.++.|.-
T Consensus 412 ~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 412 QPGEFIVLCGKDAF 425 (447)
T ss_pred CCCcEEEEEcCCce
Confidence 99999999988863
No 207
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1e-14 Score=132.17 Aligned_cols=301 Identities=18% Similarity=0.311 Sum_probs=190.9
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE-eCCCeE
Q 008496 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDGQA 298 (563)
Q Consensus 220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg-~~dg~i 298 (563)
-|+|||+|+++|+.+.- .+.|=|..+-.. .++-.. -..|.-+.|..|..+++.+ +.++.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~c----ldki~yieW~ads~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLC----LDKIVYIEWKADSCHILCVAYKDPKV 73 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHH----HHHhhheeeeccceeeeeeeeccceE
Confidence 47899999999998643 555555432110 000000 1346778899988777765 567899
Q ss_pred EEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeC
Q 008496 299 RIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 376 (563)
Q Consensus 299 ~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (563)
.+|+... .-.+.+..-..++.+++|+|+|+.+ .+..-|-.|.+|.+.+...... ......+..+.+..+..|++-..
T Consensus 74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeee
Confidence 9999754 5566778888899999999999665 4666788999999987654321 11122234455555655543221
Q ss_pred CC--e--EEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496 377 DN--M--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (563)
Q Consensus 377 d~--~--i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 452 (563)
.. . +.+..-..-..++.|.-.+-..+.+.|+|||..||. ||.--...+. .....-.+..+.|+|.+
T Consensus 153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~-aYe~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVY-AYERGLGLKFVEWSPCN 222 (447)
T ss_pred cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheee-eeeeccceeEEEecccc
Confidence 11 0 000000000122334444556778999999998874 4421111110 01122457889999977
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE------------------------------------------------
Q 008496 453 SGTNNPNQQLILASASFDSTVKLWDVELGKLL------------------------------------------------ 484 (563)
Q Consensus 453 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------------------------------------ 484 (563)
. +|+.|+.|+.+|+-+--+-+..
T Consensus 223 q---------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 223 Q---------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred c---------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 5 8999999999998642111000
Q ss_pred ------------EEec------CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCC
Q 008496 485 ------------YSLN------GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 544 (563)
Q Consensus 485 ------------~~~~------~h~~~i~~l~~spdg~~lasgs~--dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g 544 (563)
..++ ...-.+.-++||+|..|+||-.. -+.+.+||++.-++-..+.....|....|+|.-
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~ 373 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence 0000 00113566899999999998654 468999999988776666667789999999999
Q ss_pred CEEEEEECCCeEEEE
Q 008496 545 DKIAACFANHTVCVL 559 (563)
Q Consensus 545 ~~la~~~~~~~v~v~ 559 (563)
..|++|.+...+..|
T Consensus 374 prL~vctg~srLY~W 388 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFW 388 (447)
T ss_pred ceEEEEcCCceEEEE
Confidence 999999877776666
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.5e-13 Score=136.09 Aligned_cols=306 Identities=16% Similarity=0.193 Sum_probs=188.6
Q ss_pred EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCe-EEEEECCCCCEEEEEeCCCeEEEEEcCC-ce
Q 008496 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTNG-DL 307 (563)
Q Consensus 230 latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~ 307 (563)
+++-..++.+.+.|..+.+. +..+.. ...+ ..+.++|||+++.+++.||.|.++|+.. +.
T Consensus 9 ~V~~~~~~~v~viD~~t~~~-------------~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV-------------VARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE-------------EEEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEecCCCEEEEEECCCCeE-------------EEEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 34556789999999765432 111111 1223 3467999999999999999999999864 45
Q ss_pred eEeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCCceeEEeeeccc-------CeEEE-ecCCCceEEEEeC-C
Q 008496 308 KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-------PTLDV-DWRNNVSFATSST-D 377 (563)
Q Consensus 308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-d 377 (563)
..++..- ....+++++++|++++++. .++.+.++|.++.+.++.+..... .+..+ .-.....|+..-. .
T Consensus 71 v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 5555443 3457899999999988665 689999999999988887654321 22233 2234444665544 4
Q ss_pred CeEEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeeeec----ccCCCEEEE-----
Q 008496 378 NMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI----- 446 (563)
Q Consensus 378 ~~i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~----- 446 (563)
+.|.+.+....++.. .............|+|++++++.+ ..+..|-++|..+++.+..+. .|..+...+
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence 788888876654432 222223345678999999987654 456789999999888765442 233333322
Q ss_pred --EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEec
Q 008496 447 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSL 520 (563)
Q Consensus 447 --~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasg----s~dg~v~iw~~ 520 (563)
.|...+.. ...+ +.-..+.+.+||..+.+.+.++.....+ .-+.-||+++++.+. ...++|.++|.
T Consensus 230 g~vw~~~~~~------~~~~-~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 230 GPVWATSGLG------YFAI-PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEEEBSS------SSEE-EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred ceEEeecccc------ceec-ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 13222111 1122 2222346778999999999999877777 778889999999887 44589999999
Q ss_pred CCCeeEEEEecCCC--EEEEEEcCCCCEEEEEE--CCCeEEEEEee
Q 008496 521 KEGKIVKTYTGNGG--IFEVCWNKEGDKIAACF--ANHTVCVLDFR 562 (563)
Q Consensus 521 ~~~~~~~~~~~~~~--i~~l~w~~~g~~la~~~--~~~~v~v~~~~ 562 (563)
++.+.+.++....+ +..+.|++||+.+-++. .++.|.|||-+
T Consensus 302 ~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 302 KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 99988888765444 99999999999766653 34479999853
No 209
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=2.3e-15 Score=147.08 Aligned_cols=234 Identities=17% Similarity=0.328 Sum_probs=167.8
Q ss_pred CCCEEEE--EeCCCeEEEEEcC--CceeE-eec--cCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 285 EGTLLAT--GSYDGQARIWSTN--GDLKC-TLS--KHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 285 ~g~~l~s--g~~dg~i~vw~~~--~~~~~-~~~--~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+...+++ ++.-|.|-||+++ |++.. .+. .....|+.+.|.| +..+|+.++.||.|++|.+..+.....
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---- 665 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---- 665 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----
Confidence 4445554 3556899999875 33221 111 2356799999999 567899999999999998876532211
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
...|-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+....
T Consensus 666 ------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~ 715 (1012)
T KOG1445|consen 666 ------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR 715 (1012)
T ss_pred ------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence 12455677889999999999995 56889999999999999999998889
Q ss_pred ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCC-CCEEEEEEcCCCCEEEEEeCC-
Q 008496 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHR-EPVYSLAFSPTGEYLASGSLD- 512 (563)
Q Consensus 436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~-~~i~~l~~spdg~~lasgs~d- 512 (563)
+.+|++.|..++|+|+|. .+|+.+.||+|++|+.+++.. ++.-++-. ..--.|.|.-||++++..+.|
T Consensus 716 l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred eccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999997 789999999999999887653 44332211 122457888999999988877
Q ss_pred ---CcEEEEecCCCe--eEEE--EecCCCEEEEEEcCCCCEE-EEEECCCeEEEEEe
Q 008496 513 ---KSMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDF 561 (563)
Q Consensus 513 ---g~v~iw~~~~~~--~~~~--~~~~~~i~~l~w~~~g~~l-a~~~~~~~v~v~~~ 561 (563)
.+|.+||..+-. .+.+ +.....+.--.+++|.+.| .+|-+|..|..|.+
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 468999987533 2222 1212223333466776644 45666777776654
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=4.6e-15 Score=142.66 Aligned_cols=220 Identities=20% Similarity=0.352 Sum_probs=158.2
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeEe-----eccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 283 NGEGTLLATGSYDGQARIWSTNGDLKCT-----LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 283 s~~g~~l~sg~~dg~i~vw~~~~~~~~~-----~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
.+.|--++.|-..|.+.+.+........ ..-.+..|++++|-|.+ ..++.+-.+|.+.++|..... ..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC
Confidence 3567778888888999988864321111 11234789999999866 456777889999999862110 00
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
..+.. ........|+ |..|.-. ...|+..+.--.+.|+..+|+|||++||+.|.||.+||||+.+...+..
T Consensus 256 t~p~~-~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 256 TAPSY-QALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred CCCcc-cccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 00000 0011112222 1112111 1244444444456899999999999999999999999999999888777
Q ss_pred ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcC--------------
Q 008496 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-------------- 501 (563)
Q Consensus 436 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-------------- 501 (563)
++..-+...|++|+|+|+ +|++|+.|.-|.||.+..++.+..-.+|+.+|..|+|.|
T Consensus 328 mkSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM 398 (636)
T ss_pred HHhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccc
Confidence 777778899999999997 899999999999999999999999999999999999983
Q ss_pred -----------------C-----------------CCEEEEEeCCCcEEEEecCCCee
Q 008496 502 -----------------T-----------------GEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 502 -----------------d-----------------g~~lasgs~dg~v~iw~~~~~~~ 525 (563)
+ ...|.+.+.|.++.+||+..-.+
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 12477888999999999865433
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1e-13 Score=125.41 Aligned_cols=235 Identities=15% Similarity=0.242 Sum_probs=161.2
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc--CeEEEecCCCceEEEEeCC------CeEEEEEcCCC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN 388 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~ 388 (563)
...+++|+.|...++.|. |.-.+||+.+.-+....-..+.+ .+..+-++.+.....++.+ +.+.+||--..
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 455699999988777765 44579998765322111111111 2223334444444444443 47899997777
Q ss_pred cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 467 (563)
Q Consensus 389 ~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~ 467 (563)
+++..+. ...+|.++.+.++ .|+.. ..+.|.||.+. .-+.++.+.....+---.+..|.. +...+..-|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~------~k~~LafPg 155 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS------NKSLLAFPG 155 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC------CceEEEcCC
Confidence 8887765 4678999999865 34333 35689999876 344444433221111111222321 122233345
Q ss_pred eCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCeeEEEEec---CCCEEEEEEc
Q 008496 468 SFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVCWN 541 (563)
Q Consensus 468 s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-v~iw~~~~~~~~~~~~~---~~~i~~l~w~ 541 (563)
-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|..+||+|..|+ |+|||..+|+++..+.. ...|++++||
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 5679999999876554 4678899999999999999999999999996 79999999999988853 4569999999
Q ss_pred CCCCEEEEEECCCeEEEEEee
Q 008496 542 KEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 542 ~~g~~la~~~~~~~v~v~~~~ 562 (563)
|++.+||+++..|++.|+.++
T Consensus 236 p~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCccEEEEEcCCCeEEEEEee
Confidence 999999999999999999876
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=2.7e-14 Score=128.51 Aligned_cols=149 Identities=21% Similarity=0.518 Sum_probs=110.7
Q ss_pred EEEECCCCCEEEEEeC----------CCcEEEEeCCC-Cceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 403 CVKWDPTGSLLASCSD----------DVTAKIWNMKQ-DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 403 ~~~~~~~~~~las~s~----------dg~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
.+.|+|+|..|+.-.. -+...||.++. +..+..+.- ..++|..++|+|++. ...+++|..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccCC
Confidence 5789999987654332 12355665532 223333332 345799999999875 2445667788
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEE
Q 008496 471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI 547 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~l 547 (563)
+.|.|||++ ++.+..+. ..+++.|.|||+|++||+|+.+ |.|.+||+++.+.+.++... .+..++|+|||++|
T Consensus 83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYL 158 (194)
T ss_pred cccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEE
Confidence 999999997 77777764 4578999999999999998754 67999999999988887644 57899999999999
Q ss_pred EEEEC------CCeEEEEEee
Q 008496 548 AACFA------NHTVCVLDFR 562 (563)
Q Consensus 548 a~~~~------~~~v~v~~~~ 562 (563)
+++.. |..+.||++.
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEeccceeccccEEEEEec
Confidence 98864 5667888863
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.7e-13 Score=140.73 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=146.1
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
..|.+||.+|.....+..|..++.+.+|+|+|+.|+..+. +..|.+||+.++....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------- 240 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------- 240 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------------------
Confidence 3788889888877778888999999999999999887653 3578888887654211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+
T Consensus 241 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 241 ---------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS 298 (435)
T ss_pred ---------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence 112334456789999998765 5566665 66678877654 3455566666778999
Q ss_pred cCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 008496 450 PTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEG 523 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~ 523 (563)
|+|. .|+..+ .+| .|.+||+..+.. ..+..+...+....|||||++|+..+.+ ..|.+|++..+
T Consensus 299 pDG~---------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 299 PDGS---------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCC---------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 9885 333333 333 688888876544 3343344556778999999999876643 36888887654
Q ss_pred eeEEEEecCCCEEEEEEcCCCCEEEEEECC------CeEEEEEe
Q 008496 524 KIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF 561 (563)
Q Consensus 524 ~~~~~~~~~~~i~~l~w~~~g~~la~~~~~------~~v~v~~~ 561 (563)
. .+.+.....+..++|+|||+.|++...+ ..+.++|+
T Consensus 369 ~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 369 G-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred c-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 4 3344333356788999999999876543 24566664
No 214
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.8e-14 Score=129.49 Aligned_cols=277 Identities=17% Similarity=0.290 Sum_probs=191.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-------eeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008496 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 343 (563)
+|.+.|.++.||.++++|++|+.|..+++|.++.. .+.. -..|.+.|++|+|+..+..+++|..+++|.+.|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 45678999999999999999999999999997532 1111 134678999999999999999999999999999
Q ss_pred CCCCceeEEeeecc--cCeEEEecC-CCceEEEEeCCCeEEEEEcCCCc-ceeee--cCCCcceeEEEECCCC-CEEEEE
Q 008496 344 VKTEEWKQQFEFHS--GPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTF--AGHQGEVNCVKWDPTG-SLLASC 416 (563)
Q Consensus 344 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~--~~h~~~i~~~~~~~~~-~~las~ 416 (563)
+.+.+.+-.+.... +.++.++-. .+..|++.+.++.|.+|+.+... ++..+ ........++.|+|.. .+|++.
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 99987766554322 456665543 36788999999999999998755 33322 2223456678899975 577899
Q ss_pred eCCCcEEEEeCCCCce-ee------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEec
Q 008496 417 SDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLN 488 (563)
Q Consensus 417 s~dg~i~iwd~~~~~~-~~------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~ 488 (563)
+..+-+.+||.+.... +. .+......-.++.|+|.|.. +.+--.-..-.+||+-+.+| +..+.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEecc
Confidence 9999999999875431 11 11122223467889998752 22222222334556655333 22222
Q ss_pred CCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC----e-------------------eEEEEecCC-CEEE
Q 008496 489 GHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----K-------------------IVKTYTGNG-GIFE 537 (563)
Q Consensus 489 ~h~-------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~----~-------------------~~~~~~~~~-~i~~ 537 (563)
|. ..|.+++|--|-. +++||.+=.|+||.+... . .+..+.++- .+.-
T Consensus 285 -~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 285 -HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred -CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 22 2466778876544 999999999999997531 1 112223333 3467
Q ss_pred EEEcCCCCEEEEEECCCeEEEE
Q 008496 538 VCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 538 l~w~~~g~~la~~~~~~~v~v~ 559 (563)
+.|+|-...|+.++.-..+.+|
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred eeecCCcceEeccchhhheecc
Confidence 9999999999888777788887
No 215
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=132.05 Aligned_cols=185 Identities=21% Similarity=0.392 Sum_probs=142.0
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCCceee--eecccC-CCE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVH--DLREHS-KEI 443 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~-~~i 443 (563)
..++++-..|.|++|+..+.+.+..|+++...++.++|.. ....+.+|+.||+||+||++...... ....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3467778899999999999999999999999999999976 45678999999999999998765433 333444 233
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeE-EEEe-cCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYSL-NGHREPVYSLAFSPTG-EYLASGSLDKSMH 516 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~h~~~i~~l~~spdg-~~lasgs~dg~v~ 516 (563)
.++.-...+ .++++|. .|-.|.+||++..+. +..+ ..|...|+++.|+|.. .+|+|||.||.|.
T Consensus 121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 444332221 2566654 367899999998766 4444 5689999999999965 7899999999999
Q ss_pred EEecCCC----eeEEEEecCCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496 517 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~----~~~~~~~~~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~ 562 (563)
+||++.- .++.++.....|-.+.|..++ ++|.+-+..++.++|++.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999643 255566666678999999988 566666788899999874
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.8e-15 Score=144.27 Aligned_cols=208 Identities=24% Similarity=0.392 Sum_probs=153.4
Q ss_pred eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcC
Q 008496 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386 (563)
Q Consensus 307 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 386 (563)
+...+.+|++-|.+|.|+.+|.+|++||.|-.+.|||.-..+....
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs---------------------------------- 87 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS---------------------------------- 87 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence 3456889999999999999999999999999999999764433221
Q ss_pred CCcceeeecCCCcceeEEEECC--CCCEEEEEeCCCcEEEEeCCCC----------ceeeeecccCCCEEEEEEccCCCC
Q 008496 387 ENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 387 ~~~~~~~~~~h~~~i~~~~~~~--~~~~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~~p~~~~ 454 (563)
.-.||..-|-|+.|-| +.++++||..|..|+++|+... ...+.+.-|...|..|+-.|.+.
T Consensus 88 ------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P- 160 (758)
T KOG1310|consen 88 ------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP- 160 (758)
T ss_pred ------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-
Confidence 1247888899999988 4578999999999999998742 22334456777777787777654
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE---------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCC-
Q 008496 455 TNNPNQQLILASASFDSTVKLWDVELGK-LLY---------SLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE- 522 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~---------~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~- 522 (563)
..+-+++.||+|+-+|++... |.. .+....-...++..||.. .+||+|+.|-.+++||.+.
T Consensus 161 -------htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 161 -------HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred -------ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence 378899999999999998521 111 111222346789999976 6789999999999999532
Q ss_pred -------Ce----------eEEEEecC-------------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 523 -------GK----------IVKTYTGN-------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 523 -------~~----------~~~~~~~~-------------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|+ ++.-|... .+++-++|+|.|..|.+..+...|.++|+.
T Consensus 234 lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 234 LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 11 12222110 124678999999999999888889988873
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.3e-13 Score=141.25 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=143.0
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
..|.+||.++.....+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------- 242 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------- 242 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence 36889998887666777788899999999999999887643 357888876654211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.++.. ..+..+........|+
T Consensus 243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s 300 (433)
T PRK04922 243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA 300 (433)
T ss_pred ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC
Confidence 111122334689999998765 555555 589999987764 3455555556778999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~ 524 (563)
|+|. .++.+...+|. |.++|+..++.. .+..+......++|||||++|+..+.++ .|.+|++.+++
T Consensus 301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 9885 23334334554 666677666542 2222333445789999999998765443 69999998887
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 561 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~ 561 (563)
.. .+........++|+|||+.|++...+ ..+.+++.
T Consensus 372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 54 33333344568999999998877553 24555554
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.6e-14 Score=141.82 Aligned_cols=206 Identities=20% Similarity=0.224 Sum_probs=137.6
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------- 234 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------- 234 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence 46777788777666677788899999999999998876643 348888887664221
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCCcEEEEeC--CCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+....+.+.+.+|+|||+.|+ +.+.++...||.+ .++. ...+..+........|+
T Consensus 235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 111122345789999998876 5677888777754 3333 44455555556778899
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~ 524 (563)
|+|. .++.++..+|...||.+ ..++. ..+..+.......+|||||++|+..+.++ .|.+||+.+++
T Consensus 293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 9886 23444444566666654 44432 22222223345678999999999777654 69999998887
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
.... ........++|+|||+.|+++..++
T Consensus 364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 364 VTAL-TDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence 5433 3333446789999999998876543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.1e-13 Score=136.35 Aligned_cols=215 Identities=14% Similarity=0.189 Sum_probs=140.0
Q ss_pred CCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~ 348 (563)
..+.+.+|||||+.|+..+. +..+.+|+..+.....+....+.+..+.|+|+|+.|+.. +.++ .|.+||+.++.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999987653 357889998765444444444445678999999988754 3344 46667766543
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC-CcEEEE--
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW-- 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d-g~i~iw-- 425 (563)
..+ +..+...+....|+|||+.|+..+++ +...||
T Consensus 279 ~~~------------------------------------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 279 IRQ------------------------------------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred EEE------------------------------------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 221 11122345678999999988877764 455555
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
|+.++.. ..+..+........|+|+|. .+++++..+ ..|.+||+.+++.. .+... .......|||||
T Consensus 317 d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 317 NINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG 385 (429)
T ss_pred ECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence 5555543 33433444556788999885 233333333 35888999887643 33321 224567899999
Q ss_pred CEEEEEeCCCc---EEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496 504 EYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 543 (563)
Q Consensus 504 ~~lasgs~dg~---v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~ 543 (563)
++|+.++.++. +.++++ +|+....+.. .+.+.+.+|+|-
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 99999887764 677777 4555555544 456788999973
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.6e-13 Score=136.08 Aligned_cols=207 Identities=13% Similarity=0.174 Sum_probs=138.8
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+. +..+.+||+.+++...
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------- 237 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence 3788999888766666677789999999999999886542 3457777776553211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+..+.++ +..++|+|||+.|+.. +.+| .|.+||+.++... .+..+...+....|+
T Consensus 238 ------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS 295 (429)
T PRK03629 238 ------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF 295 (429)
T ss_pred ------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC
Confidence 1112222 3357899999988754 4455 4888999887654 344444567889999
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~ 524 (563)
|+|. .++.+...++...|| |+..+.. ..+..+...+...+|||||++|+..+.+ ..|.+||+.+++
T Consensus 296 PDG~--------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 296 PDSQ--------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCC--------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 9985 233333334444444 6665543 3333344456678999999999876543 358899998886
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCCe
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 555 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~ 555 (563)
.. .+.........+|+|||+.|++++.++.
T Consensus 367 ~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 367 VQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred eE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 43 3333223456899999999999887764
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=2.4e-13 Score=142.68 Aligned_cols=263 Identities=19% Similarity=0.287 Sum_probs=170.6
Q ss_pred CceeEecCCCCceEEEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 206 SDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 206 ~~~~~l~~h~~~V~~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
..+..|..|...|..++.++. +.+++|||.||+||+|++..-.... +...... ........+.++..-+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~l------tys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSEL------TYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeE------EEeccCCceEEEEecc
Confidence 346778889999988888876 5999999999999999976422110 0000000 1112356788999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCc--eeE------eeccC-CCCEEEEE-eCC-CC-CEEEEeeCCCcEEEEECCCCceeEE
Q 008496 285 EGTLLATGSYDGQARIWSTNGD--LKC------TLSKH-KGPIFSLK-WNK-KG-DYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~--~~~------~~~~h-~~~V~~l~-~~~-~~-~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
.|..+|.|+.||.|++.+.+-. ... ....+ .+.+.++. |.. .+ ..++.+..-+.+..||+++....
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence 9999999999999999987641 110 11111 23333332 221 11 24555556666777776543211
Q ss_pred eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 008496 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~ 432 (563)
|.+ ...-..|.|++++.+|.+.++++|+..|.+-+||++-+.+
T Consensus 1187 ------------------------------w~l-------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1187 ------------------------------WRL-------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred ------------------------------Hhh-------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence 111 1122356799999999999999999999999999998877
Q ss_pred eeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEecCC--------CCC---------
Q 008496 433 VHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH--------REP--------- 493 (563)
Q Consensus 433 ~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h--------~~~--------- 493 (563)
+.... .+..+|..+..+|.... ....+.+++ ..+.|.+|++.+|.+.+.+-.. ..|
T Consensus 1230 i~sw~~P~~~~i~~v~~~~~~~~-----~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1230 ILSWEHPARAPIRHVWLCPTYPQ-----ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDS 1304 (1431)
T ss_pred eecccCcccCCcceEEeeccCCC-----CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCc
Confidence 76554 34467888877775431 122444555 6889999999998776655322 111
Q ss_pred --EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 494 --VYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 494 --i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
....++..-+.++.+|+.|..|+.||...
T Consensus 1305 ~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1305 LAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ccceeeecccCCceeeecCCccceeeccCCC
Confidence 11223333346888999999999999764
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.3e-15 Score=139.37 Aligned_cols=281 Identities=22% Similarity=0.341 Sum_probs=209.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-Cce-eEeeccCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECC-
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDL-KCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVK- 345 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~-~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~- 345 (563)
..|.+.|..+.|+..|..|++|+.|..|.+|+.. +.. .....+|...|...+|-|.. ..+++++.||.|++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4567889999999999999999999999999964 333 33457899999999998854 568999999999987653
Q ss_pred CCcee--EEeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeec---CCCc---ceeEEEECCCCC-EEE
Q 008496 346 TEEWK--QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-LLA 414 (563)
Q Consensus 346 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~i~~~~~~~~~~-~la 414 (563)
++.+. ..+..|.+++..+.. .....|.+++.|+.+.-+|++...|...+. .+.. ....++.+|... .+|
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 33332 234456677655543 455789999999999999998887655443 2333 457888999765 789
Q ss_pred EEeCCCcEEEEeCCCCc------eeeeecc------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--
Q 008496 415 SCSDDVTAKIWNMKQDK------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-- 480 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~------~~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-- 480 (563)
+|+.|-.+|+||.+.-. .+..+.. ..-.|++++|+.++. -|+++..|-.|+++.-.-
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---------ElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---------ELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---------ceeeeecccceEEecccccc
Confidence 99999999999975321 1222222 234589999987664 244555677899985332
Q ss_pred C----------eEE-EEecCCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCC
Q 008496 481 G----------KLL-YSLNGHRE--PVYSLAF-SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD 545 (563)
Q Consensus 481 ~----------~~~-~~~~~h~~--~i~~l~~-spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~ 545 (563)
| ..+ ..++||.. .|..+-| -|...|+++||.-|.|.||+-.++++++.+.+. ..|.+|.=+|---
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP 449 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc
Confidence 2 122 23678864 3666654 789999999999999999999999988877663 4678899899889
Q ss_pred EEEEEECCCeEEEEE
Q 008496 546 KIAACFANHTVCVLD 560 (563)
Q Consensus 546 ~la~~~~~~~v~v~~ 560 (563)
.||+++-+..|.||-
T Consensus 450 vLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 450 VLASSGIDHDVKIWT 464 (559)
T ss_pred hhhccCCccceeeec
Confidence 999999999999994
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6e-13 Score=136.66 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=144.4
Q ss_pred CCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCc--EEEEECCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE 347 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--v~iwd~~~~ 347 (563)
...+.+.+|+|||+.|+..+. +..|.+|+..+.....+..+.+.+...+|+|+|+.|+ +.+.++. |.+||+.++
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 456899999999999988764 3689999987766666667778888999999999875 5555554 555565544
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 424 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~i 424 (563)
.. ..+..+.+......|+|||+.|+..++ +| .|.+
T Consensus 281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 32 112223344556899999998887764 33 5777
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 501 (563)
||+.++.. ..+..+...+....|+|+|. .|+..+.+ ..|.+||+..+.. ..+. ....+..++|+|
T Consensus 319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP 386 (435)
T ss_pred EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence 78766543 33433445566788999885 34443332 3688888765443 3333 223467889999
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496 502 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 502 dg~~lasgs~d------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~ 543 (563)
||++|+..+.+ ..|.++++..+.. ..+...+.+...+|+|-
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 99998765543 2578888866554 44444555778899873
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.2e-13 Score=137.59 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=140.0
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 348 (563)
..+.+.+|+|||+.|+..+.+ ..|++|+..+.....+..+.+...+.+|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 458889999999999988754 469999987665555555566666889999999875 445554 46777766543
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCc--EEEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~--i~iw 425 (563)
.. .+..+......++|+|||+.|+.+++ +|. |.++
T Consensus 284 ~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 284 LT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 21 12223333456899999998887765 455 5556
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd 502 (563)
++.++... .+..+.......+|+|+|. .|+..+ .++ .|.+||+.+++.. .+. +........|+||
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd 389 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN 389 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC
Confidence 66665432 2322333455789999885 343333 222 6999999877654 443 2224556799999
Q ss_pred CCEEEEEeCC---CcEEEEecCCCeeEEEEe-cCCCEEEEEEcC
Q 008496 503 GEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK 542 (563)
Q Consensus 503 g~~lasgs~d---g~v~iw~~~~~~~~~~~~-~~~~i~~l~w~~ 542 (563)
|++|+..+.+ +.|.++++.. .....+. ..+.+..++|+|
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 9998876653 4688888854 4444443 345677889987
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=7.3e-14 Score=127.48 Aligned_cols=269 Identities=21% Similarity=0.434 Sum_probs=176.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------eeEeeccCC------------CCEEEEEeCCCCC--EEEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG 333 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~ 333 (563)
..-|.++.|...|.+|++|..+|.|-++..+.. ....++.|. .+|..++|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 345889999999999999999999999975432 233455554 3688899998764 57777
Q ss_pred eCCCcEEEEECCCCceeE-Eeeec-ccCeEEEecCCCceE-EEEeCCCeEEEEEcCCCcceeee-cCCCcceeEEEECCC
Q 008496 334 SCDKTAIVWDVKTEEWKQ-QFEFH-SGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPT 409 (563)
Q Consensus 334 s~D~~v~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~ 409 (563)
..|++|++|-+....... .+... ..+...+ ...++ +....+-.+ ...|.+.+ .+|.-.|+++.++.|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~---~~lr~p~~~~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI---TSLRLPVEGRHDLEV------EASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCcc---ceeeceeecccccee------eeeeeeeccccceeEeeeeeecCc
Confidence 889999999876433221 00000 0000000 00000 001111111 11234444 368888999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc---eeeeeccc-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008496 410 GSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 481 (563)
Q Consensus 410 ~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 481 (563)
+..++++ +|=.|.+|++.-.. .+..++.+ +.-|++..|+|... .+++-.|.-|+|||-|++..
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--------n~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--------NVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--------cEEEEecCCCcEEEeechhh
Confidence 9988765 67789999975322 12233332 34567777777543 47788888999999999843
Q ss_pred eE------EEEec----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec-CCCeeEEEEec-------------
Q 008496 482 KL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTG------------- 531 (563)
Q Consensus 482 ~~------~~~~~----------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~-~~~~~~~~~~~------------- 531 (563)
.+ ++... .--..|..+.||++|+||++-+. -+|++||+ ...+.+.+++.
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 21 11111 11235788999999999998654 47999999 56677777753
Q ss_pred CCCE---EEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 532 NGGI---FEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 532 ~~~i---~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+..| +.++|+.++.++++|+-+....|++.
T Consensus 326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 2345 46999999999999988888899874
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=6.6e-15 Score=139.24 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=201.3
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
-+.+.++.+|++|+.|+.-|.+-.+|+.++.... -.. -...|..+.|-.+.+++|++- ...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~y 192 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------EIN-------VMETVRDVTFLHNEQFFAVAQ-KKY 192 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeee-----------eee-------hhhhhhhhhhhcchHHHHhhh-hce
Confidence 4568899999999999999999999987643210 000 023477788888888887764 568
Q ss_pred EEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC-CceEEEEeC
Q 008496 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSST 376 (563)
Q Consensus 298 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 376 (563)
+.|||-.|.....+..| ..|..+.|-|..-.|++++..|.++--|+.+|+.+..+....+.+..+.-.+ +..+-++..
T Consensus 193 ~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 193 VYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred EEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 99999999888777766 4688999999988888999999999999999999888877666655444433 344567889
Q ss_pred CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCC
Q 008496 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 377 d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 456 (563)
+|+|.+|.-....|+..+-.|.++|++|+++++|.++||.+.|..++|||++....++++.. ..+...+++|..|
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---- 346 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---- 346 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc----
Confidence 99999999999899888889999999999999999999999999999999998876666554 2344555665544
Q ss_pred CCCCcEEEEEEeCCCeEEEEe-CCC--CeEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 457 NPNQQLILASASFDSTVKLWD-VEL--GKLLYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 457 ~~~~~~~l~s~s~dg~i~iwd-~~~--~~~~~~~~~h--~~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
+| ++|....|.||. .-. +..-.....| .++|..+.|.|-...|-.|-.-|.-.|-
T Consensus 347 ------lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 347 ------LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ------ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 34 455667899994 222 1111111222 3589999999977777776666643343
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.1e-13 Score=135.95 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=139.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEEC--CCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDV--KTE 347 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~--~~~ 347 (563)
...+.+.+|+|||+.|+..+.+ ..|.+|+..+.....+....+.+.+..|+|+|+.|+ +.+.++...||.+ .++
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3568889999999999887753 359999987655555554556677899999999886 5566776666643 221
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEe
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWN 426 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd 426 (563)
. ...+..+.+......|+|||+.|+..++ +|...||.
T Consensus 275 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 275 G------------------------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred C------------------------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 1 1122223334456789999998876665 56677776
Q ss_pred C--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEEEcC
Q 008496 427 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 427 ~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 501 (563)
+ .++.. ..+...........|+|+|. .|+..+.++ .|.+||+.+++.. .+... ......+|+|
T Consensus 313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~sp 380 (427)
T PRK02889 313 MPASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAP 380 (427)
T ss_pred EECCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECC
Confidence 5 33332 22222233345678999886 455444443 6999999887654 33322 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496 502 TGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 543 (563)
Q Consensus 502 dg~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~ 543 (563)
||++|+.++.++ .+.+.++ +|+..+.+.. .+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999998776543 3555555 4555555543 355778899874
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=4.8e-13 Score=120.37 Aligned_cols=118 Identities=29% Similarity=0.640 Sum_probs=91.6
Q ss_pred CCcceeEEEECCCCCEEEEE--eCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CC
Q 008496 397 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS 471 (563)
Q Consensus 397 h~~~i~~~~~~~~~~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg 471 (563)
..++|.+++|+|+|+.||.+ ..+..|.+||.+ .+.+..+ +...+.++.|+|.|. +|+.|+. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~---------~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGR---------FLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCC---------EEEEEEccCCCc
Confidence 34579999999999987654 357799999997 5555555 356778999999986 5666654 46
Q ss_pred eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCeeEEEE
Q 008496 472 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~ 529 (563)
.|.+||+++.+.+.... |. .++.++|||||++|++++. |+.++||+.. |+++...
T Consensus 126 ~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 79999999888887765 33 4789999999999998864 6789999984 6665543
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5e-13 Score=129.80 Aligned_cols=271 Identities=16% Similarity=0.267 Sum_probs=188.5
Q ss_pred CCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCceeEeeccCCC--CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCcee
Q 008496 274 SKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 350 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 350 (563)
...-+.+..+|||+|+ ++|.+--.|++||+..-. ..|..|.. .|.-.-.+.+-..++.--.|.+|-+........
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy- 128 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY- 128 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee-
Confidence 4456788999999975 567788999999986432 23444433 333333333333344444566655543211100
Q ss_pred EEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 351 QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
.... .....++.+. ....+.+++....||-+++..++-+..|....+.++++..++-..+|++|+.+|.+..||.+.
T Consensus 129 -~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 -RTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred -eeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 0000 0112233332 233455566667789999999888888887788999999999999999999999999999987
Q ss_pred Cceeeeec------ccCC-----CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEE
Q 008496 430 DKYVHDLR------EHSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL 497 (563)
Q Consensus 430 ~~~~~~~~------~~~~-----~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l 497 (563)
...+..+. .|.+ .|+++.|+.+| +-++.|..+|.|.|||+++.+++..-. +...||..+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 76655443 2333 38999998766 468999999999999999988776543 335689999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 498 AFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 498 ~~spdg--~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
.|-+.+ ..++|.. ...++|||-.+|+..........+.++|+=|++-.+.++-.++.+..
T Consensus 278 ~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 997763 4555433 35689999999999888887788999999999988888866665543
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.5e-13 Score=123.11 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=182.7
Q ss_pred CceEEEEECCCC--CEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 216 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 216 ~~V~~~~~sp~~--~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
..|..++|.-++ .+|...+.|..+.+..+......... ..++.. ....+.|..++.. + ..|++|-
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~-d-g~Litc~ 122 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLA-D-GTLITCV 122 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhc-C-CEEEEEe
Confidence 446677777654 45666657777777666543321110 000111 1112345444433 2 3677889
Q ss_pred CCCeEEEEEcC-----CceeEeeccCCCCEEEEEeCCCCCEEE-EeeCC--CcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 294 YDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 294 ~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
.+|.+.+|... ......+..+ ..+..+.-++...+++ +|+.. ..+++||+... .+.|....-+.
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpn----- 194 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPN----- 194 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCC-----
Confidence 99999999865 2333334333 4567777777776665 48888 78999999876 44444322111
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC--CCEEEEEeCCCcEEEEeCCCC-ceeeeecccCCC
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKE 442 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 442 (563)
+. .+-.|-+| ++.+.|-+. ...||+|+.-+.+|+||.+.+ +++..|..-..+
T Consensus 195 --D~------L~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 195 --DR------LGLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred --cc------ccceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 00 01122333 345666655 678999999999999999865 467777766778
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~ 521 (563)
++++...|.+. ++.+|..-|.+..||++.++.+.. +.+..+.|.+|..+|.+++||++|.|..|+|+|++
T Consensus 250 is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 250 ISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 89998888775 688899999999999999998877 88899999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCEEEEEEcC
Q 008496 522 EGKIVKTYTGNGGIFEVCWNK 542 (563)
Q Consensus 522 ~~~~~~~~~~~~~i~~l~w~~ 542 (563)
+.+++...--...++.+-+.+
T Consensus 321 trkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 321 TRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred cchhhhhhhhhccccEEEecC
Confidence 977654432333344444433
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=7.4e-15 Score=147.91 Aligned_cols=234 Identities=21% Similarity=0.384 Sum_probs=174.9
Q ss_pred EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCC
Q 008496 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE 387 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~ 387 (563)
..+.+|.++|+|+.|...|.++++|+.|..++||...++.+.....+|.+.+.++.-. ++..+++++.|..|++|.+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 3567899999999999999999999999999999999999999999999998888765 455668889999999999999
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee---ecc-cCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
+.|+..+.||++.|++++|+|- ++.+.||++++||.+-.-.+.. +.. ....+-++.|...+. -
T Consensus 264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~ 330 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------R 330 (1113)
T ss_pred CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------c
Confidence 9999999999999999999995 4889999999999871111110 000 112334444444332 4
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496 464 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN 541 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg-~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~ 541 (563)
++|++.|+.-+.|....- ..+...+.-+.++.|- .+.+++-.+-.+++|++.+|.+++...++ ..++-|.++
T Consensus 331 f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cccccCCcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 678999988888865421 1122112222222232 46667777889999999999887766554 357889999
Q ss_pred CCCCEEEE-EECCCeEEEEEe
Q 008496 542 KEGDKIAA-CFANHTVCVLDF 561 (563)
Q Consensus 542 ~~g~~la~-~~~~~~v~v~~~ 561 (563)
|-..++|. +.-||...|||+
T Consensus 405 pfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCCcHhhhhccCCCceEeeec
Confidence 98876663 456889999986
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.3e-14 Score=135.12 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=153.0
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-ceeE-eeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008496 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC-TLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 271 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 346 (563)
.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-. ++.. .-.+|+..|++++|-|. ...+++|+.|+.|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 45678899999999999999999999999999753 3333 45789999999999984 46789999999999999864
Q ss_pred CceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC-CEEEEEeCCCcEEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIW 425 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~las~s~dg~i~iw 425 (563)
.+-. +. |-+...+...+..|...|..++--|++ ..+.++++||+|+-+
T Consensus 127 ~~~~------------------------~~-------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 127 SKEG------------------------GM-------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred cccc------------------------cc-------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence 2100 00 111122344566788889899999998 678899999999999
Q ss_pred eCCCCcee-ee------ec---ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------Ce-----
Q 008496 426 NMKQDKYV-HD------LR---EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------GK----- 482 (563)
Q Consensus 426 d~~~~~~~-~~------~~---~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------~~----- 482 (563)
|++..... .. +. ..--...++..+|.. ..+||.|+.|-..++||.+. +.
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r--------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR--------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCC--------CceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 99863211 11 00 111234666776654 35899999999999999431 11
Q ss_pred -----EEEEe-cCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 483 -----LLYSL-NGHR-----------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 483 -----~~~~~-~~h~-----------~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
|+..+ .+|. ..++-+.|+|+|.-|...=..-.|+++|+..++....|
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 12111 2222 12566899999965544322336999999887755444
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2.5e-13 Score=130.91 Aligned_cols=241 Identities=20% Similarity=0.278 Sum_probs=158.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc--e----eEeeccCCCCEEEEEe-----CCCCCEEEEeeCCCcEEEEE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVWD 343 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~v~iwd 343 (563)
..++...++..|.+|+-.- ...+.+|+..|. + ...+-.-++| ++-.| .|.+--++.|-.-|.|.+.|
T Consensus 124 g~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred cceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEec
Confidence 3456666677777766533 246778876542 1 1111111222 22333 35666788888888999888
Q ss_pred CCCCceeEEee----ecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 344 VKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 344 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
....+..+.|. .....+.++.|. ++..|+.+..+|.+++++...... -+ -.+-...+++..++..
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t--~p~~~~~k~~~~f~i~- 272 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------AT--APSYQALKDGDQFAIL- 272 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CC--CCcccccCCCCeeEEe-
Confidence 76543332221 223567889996 456788889999999987621110 00 0111223345444332
Q ss_pred CCCcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE
Q 008496 418 DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 496 (563)
Q Consensus 418 ~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 496 (563)
.|-.. +..++..+.--.+.|..++|+|+|. +||+.|.||.+||||..+.+++..++.--+...|
T Consensus 273 ------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 273 ------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC 337 (636)
T ss_pred ------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence 22211 2234444444456889999999986 8999999999999999988887777766678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEEc
Q 008496 497 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN 541 (563)
Q Consensus 497 l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w~ 541 (563)
++|||||+||++|+.|..|.||.+..++++..-.++ ..|..++|+
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999998876654 456677776
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.3e-12 Score=128.14 Aligned_cols=295 Identities=17% Similarity=0.275 Sum_probs=201.4
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCC--CCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
...|++|+....++|.||.||.+++-.+.+.+....... .+.+...- ....+|+..|.-+.|+.+.+.|.|...
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmN----QtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMN----QTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchh----hhhccCcceEEEEEeccccccccccCC
Confidence 367999999999999999999999999876543322111 12222111 223456788999999999999999999
Q ss_pred CCeEEEEEcC-Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceE
Q 008496 295 DGQARIWSTN-GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 371 (563)
Q Consensus 295 dg~i~vw~~~-~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (563)
+|.|.+|-+- |... .+-...++-|.+++|+.+|..+.....||.|.+=.+...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------ 147 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------ 147 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence 9999999864 3221 123456678999999999999999999998877544322
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-------e-ee---eecccC
Q 008496 372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-VH---DLREHS 440 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-------~-~~---~~~~~~ 440 (563)
++|.- .++|. ....+.|++|.+.+..+-..|.+.+||....- + +. .+....
T Consensus 148 ---------RIwgK-------eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 148 ---------RIWGK-------ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred ---------eecch-------hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 12211 01110 12257789998888778888999999865321 1 11 112223
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCC-------
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLD------- 512 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~d------- 512 (563)
..|..+.|.........|+. ..|+.+..+|.+.|..-.+.. ++..-.+ -.|..+.|+|+|.+||.+|.|
T Consensus 210 ~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~ 286 (1189)
T KOG2041|consen 210 TKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPT 286 (1189)
T ss_pred ccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCcc
Confidence 34677788644333333443 468889999998887554432 2222222 457889999999999998865
Q ss_pred --CcEEEEecCCCeeEEEEecC-CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 513 --KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 513 --g~v~iw~~~~~~~~~~~~~~-~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.|++|.. -|+++.+++.. ..|++++|-..|-++|.+ .|+.+.+-++|
T Consensus 287 d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 287 DSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred ccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 35777764 47788888764 469999999999999988 56677777776
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=1.2e-12 Score=119.80 Aligned_cols=323 Identities=19% Similarity=0.303 Sum_probs=214.5
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
..++||.+.|++...-|...-+.+.+.|.++|||--.+.... .| .+++ ...++++++.+.++...
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----wp----sI~~------~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----WP----SIYH------YMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----Cc----hhhh------hCCCCceEeeeeccceE
Confidence 456899999999988898888999999999999963321110 00 1111 12467899999999999
Q ss_pred EEEEeCCCeEEEEEcCCc-----eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc---Ce
Q 008496 289 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PT 360 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~ 360 (563)
|+.|-.+|++.-+..... .......|.+.|+.+-|+-...++++.+.|+.+.---.+.+..+..+.+... ..
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999999999988875432 2223457999999999999999999999998765444444444433332221 11
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEc--CCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeec
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLR 437 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~~~ 437 (563)
.++. ....+...+.|....+ ..-.++.++.+|.+.+.+++|.+...+|.+|..|..+.+||+...+ ....+.
T Consensus 163 ~d~~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 163 FDAL-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred eeeE-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence 1111 1122333444544444 3446788999999999999999999999999999999999986544 346778
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---E--------------------------ec
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---S--------------------------LN 488 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~--------------------------~~ 488 (563)
+|...+..+...+... .|.+++.||.|-+|+....+... . +.
T Consensus 238 gh~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr 308 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLR 308 (404)
T ss_pred cchhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhh
Confidence 8988888887766543 68899999999999986433210 0 00
Q ss_pred CCC-----CCEEEEEEcCCCCEEEEEeCCCcEE--------EEecCCCeeEEEE-ecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 489 GHR-----EPVYSLAFSPTGEYLASGSLDKSMH--------IWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 489 ~h~-----~~i~~l~~spdg~~lasgs~dg~v~--------iw~~~~~~~~~~~-~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
.|. ..|...+ +.......+-+..-.++ |+|... ..+.++ +.+.+|+.+....+-..|++++.|.
T Consensus 309 ~h~crkcg~avc~~c-~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~R 386 (404)
T KOG1409|consen 309 QHHCRKCGKAVCGKC-SSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDR 386 (404)
T ss_pred hhhhhhhhhhcCccc-ccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCce
Confidence 010 1111111 11111222222222333 333332 122222 3356799999988888999999999
Q ss_pred eEEEEEee
Q 008496 555 TVCVLDFR 562 (563)
Q Consensus 555 ~v~v~~~~ 562 (563)
.+.|||+|
T Consensus 387 vi~iwd~~ 394 (404)
T KOG1409|consen 387 VIKIWDVR 394 (404)
T ss_pred EEEEEech
Confidence 99999987
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=9.3e-12 Score=127.86 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=139.6
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
..|.+++.++.....+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.++....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------- 228 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------- 228 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence 36778888776666677777889999999999999877644 368888876653211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.++.. ..+..+........|+
T Consensus 229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS 286 (417)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC
Confidence 111223345688999998765 444444 588889887654 3344444445567888
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg---~v~iw~~~~~~ 524 (563)
|++. .++.+...++ .|.++|+..++. ..+..+...+..++|+|||++|+.++.++ .|.+||+.++.
T Consensus 287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 8775 2334443333 578888876654 33443455677889999999999888776 79999998765
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
.. .+.........+|+|||+.|++++.++
T Consensus 358 ~~-~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 358 ER-VLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence 43 233233345678999999998876654
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=3.6e-11 Score=115.72 Aligned_cols=312 Identities=16% Similarity=0.276 Sum_probs=202.3
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
-++..++|||.|.+|++...- -|.+|.-.... ....+ ....|..+.|||.+++|.+=+..
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------~l~~~---------~~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------KLVRF---------RHPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccchh----------heeee---------ecCCceecccCcccceeeeeccC
Confidence 356788999999999986554 47788643221 01111 13569999999999999987654
Q ss_pred C---------------eEEEEEcC-CceeEeeccCCCC--EE-EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-ee-
Q 008496 296 G---------------QARIWSTN-GDLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE- 354 (563)
Q Consensus 296 g---------------~i~vw~~~-~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~- 354 (563)
+ .+.+||.. |.++..+..-..+ .+ -++|+-+.++++-. ....+.|+++ +...... +.
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 4 48999965 5566666665555 55 68899988887644 3347899986 4332211 10
Q ss_pred ecccCeEEEecCCC---ceEEE-----EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC--------
Q 008496 355 FHSGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-------- 418 (563)
Q Consensus 355 ~~~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-------- 418 (563)
.....+.++.|.+. ..++. ....+++++|.+..+.++.+-.-..-.=..+.|++.|++|..--.
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 11123455555433 12222 245678888888866655432222222346889999987653211
Q ss_pred ---CCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE
Q 008496 419 ---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 495 (563)
Q Consensus 419 ---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 495 (563)
...+.|+++....+... ....++|...+|.|.+. +..+++|-++..+.++|++.. ..+.+. ...=+
T Consensus 251 yfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN 319 (561)
T COG5354 251 YFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN 319 (561)
T ss_pred eeccceEEEEeeccccccee-ccccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence 23467777764333222 25578999999999875 356778889999999999854 544443 33447
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEE-EEecCCCEEEEEEcCCCCEEEEEEC------CCeEEEEEe
Q 008496 496 SLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 561 (563)
Q Consensus 496 ~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~-~~~~~~~i~~l~w~~~g~~la~~~~------~~~v~v~~~ 561 (563)
.+.|||.+++++.++.| |.|.||+.....++. .+.+.. ..-+.|+|||..+-+.+. |..+.|||+
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 78999999999998876 689999987665444 444322 233469999998887754 345778876
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.9e-11 Score=117.77 Aligned_cols=272 Identities=17% Similarity=0.370 Sum_probs=167.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCCCEEEEEeCCCCCEEEEe-----eCCC-----cEEEEE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCDK-----TAIVWD 343 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D~-----~v~iwd 343 (563)
.+....++|++|++++.+. +..++|++.... ...+. ....++.|.|+|.|++|.+- ..++ .+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~--~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV--ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe--ccceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467788999999888754 568888886543 22222 22278999999999998762 2233 467999
Q ss_pred CCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc----------------------------------
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---------------------------------- 389 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---------------------------------- 389 (563)
+.++.....+...........|..+..+++=-..+.+++++....+
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 9885433333322222122333333222211112222233222110
Q ss_pred ---ceeeec----C-C---------CcceeEEEECCCCCE-EE--EEeCCC---------cEEEEeCCCCceeeeecccC
Q 008496 390 ---PIKTFA----G-H---------QGEVNCVKWDPTGSL-LA--SCSDDV---------TAKIWNMKQDKYVHDLREHS 440 (563)
Q Consensus 390 ---~~~~~~----~-h---------~~~i~~~~~~~~~~~-la--s~s~dg---------~i~iwd~~~~~~~~~~~~~~ 440 (563)
.++.+. + | ...=..+.|++-|.- |+ +..-|. ++.+.++....++..+. ..
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~ 270 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE 270 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence 011110 0 0 011124667766552 22 222233 45566655334333332 36
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEE
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHI 517 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~i 517 (563)
++|+++.|+|.+. +..++.|-+-..+.|+|++ +..++.+. .+|-+++-|+|.|++|+.+|.+ |.|-|
T Consensus 271 GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 271 GPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 8999999999885 3567788899999999987 67777764 4677899999999999998875 78999
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC------CeEEEEEe
Q 008496 518 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF 561 (563)
Q Consensus 518 w~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~------~~v~v~~~ 561 (563)
||+.+.+++..+.... -+-+.|+|||.++.++... ..+.||+.
T Consensus 341 wDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999988887776533 2446899999999887543 45677764
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=3.7e-12 Score=134.00 Aligned_cols=252 Identities=17% Similarity=0.257 Sum_probs=174.6
Q ss_pred EEcCCceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc-----e--eEEeeecccCeEEEec-CCCceE
Q 008496 301 WSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-----W--KQQFEFHSGPTLDVDW-RNNVSF 371 (563)
Q Consensus 301 w~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~-----~--~~~~~~~~~~~~~~~~-~~~~~~ 371 (563)
|...|.++..+..|...|..++.++.. .+|+|||.||+|++||.+... . ..++......+..+.. .+...|
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888899999999999999999887655 899999999999999986421 1 2233333445555544 456678
Q ss_pred EEEeCCCeEEEEEcCCCc-------ceeeecCCC-c-ceeEEEECC-CCC-EEEEEeCCCcEEEEeCCCCceeeeec--c
Q 008496 372 ATSSTDNMIYVCKIGENR-------PIKTFAGHQ-G-EVNCVKWDP-TGS-LLASCSDDVTAKIWNMKQDKYVHDLR--E 438 (563)
Q Consensus 372 ~~~~~d~~i~~~~~~~~~-------~~~~~~~h~-~-~i~~~~~~~-~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~ 438 (563)
|.++.||.|.+.+++... ..+....+. + .+.+-+|.. .+. .|+.+..-+.|..||.+.......++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 999999999999987621 111111121 2 233334432 233 67888889999999998765544333 3
Q ss_pred cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEEcCCC---CEEEEEe--CC
Q 008496 439 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG---EYLASGS--LD 512 (563)
Q Consensus 439 ~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~spdg---~~lasgs--~d 512 (563)
..+.|++++.+|.+. +++.|..-|.+-+||++-+..+.+.. ++..+|..+..+|-. .+.++++ ..
T Consensus 1194 ~hG~vTSi~idp~~~---------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cccceeEEEecCCce---------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 457899999999764 89999999999999999888877653 355788888777643 4555544 46
Q ss_pred CcEEEEecCCCeeEEEEecCCC--------------------EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 513 KSMHIWSLKEGKIVKTYTGNGG--------------------IFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~~~--------------------i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+.|.+|++.+|..-.++-...+ ....+..-.+..+.+|++|..|+-||.
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 7899999999865544422101 112233334457778888989998885
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=2.2e-12 Score=133.93 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=163.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe-----
Q 008496 286 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----- 360 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----- 360 (563)
+.+++++..-+.+..-..+......+.. -|+...+.-....++.+..++.+.+||...+.............
T Consensus 61 ~~~~v~~~~~~~v~~~~~~~~~~~~~s~---wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~ 137 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEASNQIIERFSD---WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL 137 (967)
T ss_pred cceEEEEEeecceeecchhhhhhhhccc---cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence 3455565555555444333322222322 33334555567788889999999999987765444332222111
Q ss_pred EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-eeccc
Q 008496 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREH 439 (563)
Q Consensus 361 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~ 439 (563)
....-.....+++++.-+.|.+|+.....+-..+.||.+.|-.+.|+-||++++++|+|.++|+|++.+.+... ..-+|
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 11122344567788888899999986544333688999999999999999999999999999999999887665 56689
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
+..+..+++.|. .+++++.|.+.++|+.. ++.+..+.+|. ..|..++.+++...++|++.|+.+++|
T Consensus 218 saRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 218 SARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 999999999885 58999999999999765 55555777775 469999999999999999999999999
Q ss_pred ecCC
Q 008496 519 SLKE 522 (563)
Q Consensus 519 ~~~~ 522 (563)
++..
T Consensus 286 ~l~~ 289 (967)
T KOG0974|consen 286 DLNG 289 (967)
T ss_pred hhhc
Confidence 9864
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=2e-12 Score=118.19 Aligned_cols=313 Identities=17% Similarity=0.291 Sum_probs=175.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccc--------cCCCCeEEEEECCCC-
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG- 286 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~g- 286 (563)
+-|.++.|...|.+||||..+|.+.++.-..... +..... ..+..+.. .....|..+.|.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~--t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQ--TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccc------cceeee--eeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 4478999999999999999999999997433211 100110 11111111 112347788998865
Q ss_pred -CEEEEEeCCCeEEEEEcCCceeEe------eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-eeccc
Q 008496 287 -TLLATGSYDGQARIWSTNGDLKCT------LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSG 358 (563)
Q Consensus 287 -~~l~sg~~dg~i~vw~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~ 358 (563)
..++..+.|.+|++|....+.... -.+..+.|++|+. .+.+..|-.+..- +.+.+ ..|..
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~vea~------prRv~aNaHty 165 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVEAS------PRRVYANAHTY 165 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceeeee------eeeecccccee
Confidence 467778899999999754221100 0001111222211 0111111110000 00000 11222
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCc---ceeeecCC-----CcceeEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGH-----QGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h-----~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~ 429 (563)
.+.++....+..+..+..|-.|.+|.+.-.. .+...+.+ +.-|++..|+|. .++++-.|..|+||+-|++.
T Consensus 166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 2333333344444444444444444442211 11122222 234788999996 46788888899999999985
Q ss_pred Cceee----------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEEecCCC-
Q 008496 430 DKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYSLNGHR- 491 (563)
Q Consensus 430 ~~~~~----------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~h~- 491 (563)
....- -|..--..|..+.|++.|. ++++-+. -+|++||+ ...+++.+..-|.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---------yilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---------YILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---------EEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 43211 0111224577889999886 6666543 68999998 3455555554442
Q ss_pred -----------CCE---EEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE-E-------------------EecC-----
Q 008496 492 -----------EPV---YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-T-------------------YTGN----- 532 (563)
Q Consensus 492 -----------~~i---~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~-~-------------------~~~~----- 532 (563)
..| ..++||-++.+++|||....+++|++..|.... + ..++
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence 233 458999999999999999999999976553110 0 0000
Q ss_pred ----------CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 533 ----------GGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 533 ----------~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
..|+..+|+|..+.+|++..|. +.|+
T Consensus 396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 396 EISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 1245689999999999987763 4444
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=3.7e-11 Score=123.36 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=136.0
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCC--cEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~--~v~iwd~~~~~ 348 (563)
..+...+|+|||++|+.+... ..|++|+..+.....+..+.+.+.+++|+|+|+.|+. .+.++ .|.+||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 357788999999999988754 4799999876544455556677788999999987764 44443 46666665543
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw 425 (563)
.. .+..+........|+|+|+.|+.++. ++ .|.+|
T Consensus 270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 21 11122223345689999998877665 33 57777
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCEEEEEEcCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd 502 (563)
++.+++. ..+..+...+....|+|++. +++.++.++ .|.+||+.++... .+... ......+|+||
T Consensus 308 d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 308 DADGGEV-RRLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN 375 (417)
T ss_pred ECCCCCE-EEeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence 8776653 33444555667889999875 455555554 7889998876542 23222 22355689999
Q ss_pred CCEEEEEeCCC---cEEEEecCCCeeEEEEec-CCCEEEEEEc
Q 008496 503 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN 541 (563)
Q Consensus 503 g~~lasgs~dg---~v~iw~~~~~~~~~~~~~-~~~i~~l~w~ 541 (563)
|++|+.++.++ .+.+.+. +|+....+.. .+.+..++|+
T Consensus 376 g~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 376 GRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 99998777654 4555554 3444444432 3445566664
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5.7e-11 Score=122.25 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=133.2
Q ss_pred eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
.|.++|.+|.....+..+..++...+|+|+|++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------------------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------------------- 237 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence 4777788777666666778889999999999998876543 247777776654221
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCCC--cEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p 450 (563)
+....+.+...+|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|
T Consensus 238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK 296 (430)
T ss_pred --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence 111112234688999999876 455555 5778898877643 3555555566788999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEecCCCee
Q 008496 451 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI 525 (563)
Q Consensus 451 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d-g--~v~iw~~~~~~~ 525 (563)
++. .++.+...+| .|.++|+.+++... +..........+|||||++|+..+.+ + .|.+||+.+++.
T Consensus 297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 875 2444443443 57777887776432 22112233457899999999876643 3 588899988764
Q ss_pred EEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 526 VKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
.. +.........+|+|||+.|+.+...
T Consensus 368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 368 RI-LTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence 33 3222223356899999999887543
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.3e-11 Score=117.35 Aligned_cols=279 Identities=17% Similarity=0.232 Sum_probs=194.4
Q ss_pred CCCceEEEEECCCCCE-EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEE
Q 008496 214 HTSEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~-latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg 292 (563)
|....+.+..+|||++ ||||..--.|++||+.+-. ++. ..+.. ...|...-.+-|-..++.-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LKF-ERhlD--ae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LKF-ERHLD--AEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccce--------------eee-eeccc--ccceeEEEeccchhhheEe
Confidence 4445677889999985 6778788999999986521 111 11111 2334444455555555555
Q ss_pred eCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-
Q 008496 293 SYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS- 370 (563)
Q Consensus 293 ~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 370 (563)
-.|..|-+-...|.-.. .++ ..-..++++.-.--|+.++....|.-.++..|.+++.|....+.+..+....-..
T Consensus 113 ~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred ecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 66777766654443221 111 2224455554343455566666788889999999999988888877777665544
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeec------CCCc-----ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
+++++.+|.|-.||.+....+.++. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++.. +.|
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh 268 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDH 268 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-ccc
Confidence 4555669999999988766555443 2333 499999999999999999999999999999887643 334
Q ss_pred --CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 440 --SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 440 --~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i 517 (563)
.-+|..+.|.+.+. +..++|. ....++|||-.+|+....+.. ...++.+++-|++.++++|-.++.+..
T Consensus 269 ~~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred CCccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 45788999987632 2245544 346799999999998877764 445999999999999999999988877
Q ss_pred EecCC
Q 008496 518 WSLKE 522 (563)
Q Consensus 518 w~~~~ 522 (563)
|=+..
T Consensus 340 yyiP~ 344 (703)
T KOG2321|consen 340 YYIPS 344 (703)
T ss_pred EEccc
Confidence 76653
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.2e-10 Score=119.54 Aligned_cols=204 Identities=17% Similarity=0.210 Sum_probs=129.8
Q ss_pred eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-C--cEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
.+.++|.+|.....+..+..++.+..|+|+|++|+..+.+ + .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---------------------- 256 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---------------------- 256 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence 6677788776556666778889999999999998876543 2 46677776553211
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEE-EeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las-~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~p 450 (563)
+..+.+ .....+|+|||+.|+. .+.++. |.+||+.++.. ..+..+........|+|
T Consensus 257 -----------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 257 -----------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP 315 (448)
T ss_pred -----------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence 111111 2235789999997764 566665 66778877654 34444555567789999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCee
Q 008496 451 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI 525 (563)
Q Consensus 451 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg--~v~iw~~~~~~~ 525 (563)
++. .++.+...++ .|.++|+.+++... +..........+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 316 DGK--------SLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 875 2444444444 46666777666432 2212222345799999999887654 34 456678877764
Q ss_pred EEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 526 VKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 526 ~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
.. +.........+|+|+|+.|+....+
T Consensus 387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 387 QV-LTSTRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence 33 2222222356899999999876554
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=6.2e-11 Score=116.35 Aligned_cols=188 Identities=20% Similarity=0.382 Sum_probs=152.6
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc---cCeEEEecC---------------------CCceEEEEeCCCe
Q 008496 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWR---------------------NNVSFATSSTDNM 379 (563)
Q Consensus 324 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~d~~ 379 (563)
.|...|++....||.+++||..+++..+.|.... +.-.+..|. +...++.+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999998888777664322 122223331 2235677888999
Q ss_pred EEEEEcCCCcceeeec--CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC
Q 008496 380 IYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 457 (563)
Q Consensus 380 i~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 457 (563)
|.++++..+.....+. +|.+.|+++.++.+-..|.|++.|+.+..|+....+.++.+......+.+++.+|++.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~---- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK---- 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC----
Confidence 9999998887666665 6889999999999999999999999999999999998888888888899999999975
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-----CCEE-EEEeCCCcEEEEecCC
Q 008496 458 PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE 522 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l-asgs~dg~v~iw~~~~ 522 (563)
+|++|| +.|++||+++++.+..+.||.++|.+++|--+ |.++ .++..+.-+.+|-+..
T Consensus 158 -----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 -----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 677776 68999999999999999999999999999876 5554 5556677788898754
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.6e-10 Score=116.08 Aligned_cols=240 Identities=16% Similarity=0.178 Sum_probs=149.7
Q ss_pred CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCE--E-EEeeCCC--cEEEEECCCCceeEEeeecccCeEEEecCCCc-
Q 008496 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY--L-LTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV- 369 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~--l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (563)
..|.+.|.+|.....+......+.+-+|+|+|+. + ++...++ .|.+.++.+++..+... ..+......|.++.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence 4677777777666666666667788899999975 2 2444444 57777888776444322 23334456776654
Q ss_pred eEEEEe-CCC--eEE--EEEcCC---CcceeeecCCCcceeEEEECCCCCEEEEEe-CCCcEEEEeC--CC-Cceeeeec
Q 008496 370 SFATSS-TDN--MIY--VCKIGE---NRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNM--KQ-DKYVHDLR 437 (563)
Q Consensus 370 ~~~~~~-~d~--~i~--~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~las~s-~dg~i~iwd~--~~-~~~~~~~~ 437 (563)
.++..+ .++ .++ .|++.. +.+.....++.+.....+|+|||+.|+..+ .+|...||.+ .. +.....+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 444332 122 233 355543 233333333334456789999999887666 4676666653 32 22234444
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC---C
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---D 512 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~---d 512 (563)
.+...+....|+|+|. .++.++..+ ..|.+||+.+++.. .+......+....|+|||++|+..+. .
T Consensus 324 ~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 324 KKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred cCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCC
Confidence 4555677889999986 233333332 46999999888764 33333345678999999998875432 3
Q ss_pred CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC
Q 008496 513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 545 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~ 545 (563)
..|.+|++..++........+.+...+|+|-..
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~~ 427 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGSGEKRFPSWGAFPS 427 (428)
T ss_pred ceEEEEECCCCCEEEeecCCCcccCceecCCCC
Confidence 568899998887666655666677899998653
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.2e-10 Score=119.76 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=132.8
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 348 (563)
..+....|+|||+.|+..+.+ ..|.+|+..+.....+....+.+....|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 457889999999999877654 368888987655445554555566789999999886 444444 45566665543
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw 425 (563)
.. .+..+........|+|||+.|+..++ ++ .|.++
T Consensus 279 ~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 279 LS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred eE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 21 11222333456789999998776664 33 46667
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
++.+++.. .+...........|+|++. .++.+...++ .|.+||+.+++.. .+.. ........|||||
T Consensus 317 d~~~g~~~-~lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg 385 (430)
T PRK00178 317 NVNGGRAE-RVTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNG 385 (430)
T ss_pred ECCCCCEE-EeecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCC
Confidence 77666532 2222222334568888875 2333333333 5888999877643 2321 1222356899999
Q ss_pred CEEEEEeCC---CcEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496 504 EYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 543 (563)
Q Consensus 504 ~~lasgs~d---g~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~ 543 (563)
++|+..+.+ ..|.++++. |.....+.. .+.+...+|+|-
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 999876643 346777774 333333333 345678889874
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.9e-10 Score=111.82 Aligned_cols=314 Identities=16% Similarity=0.305 Sum_probs=188.3
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC---
Q 008496 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--- 295 (563)
Q Consensus 219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d--- 295 (563)
+-+.|||-|++|+|--.-| |.+|-=.+ -.. +. .-....|..++|||..+||+|=+..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r----------~~------RF~Hp~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES---FDR----------IQ------RFYHPGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc---HHH----------HH------hccCCCceeeecCCccceEEEecCCccc
Confidence 4588999999999986655 66784211 000 00 0113458899999999999987652
Q ss_pred --------CeEEEEEcC-CceeEeecc--CCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 296 --------GQARIWSTN-GDLKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 296 --------g~i~vw~~~-~~~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
..++|||.. |.++..+.. ...+++. .+||.+++|++.-.. .+|.||+.....+...-...-..+.++
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 478999965 666666655 2333433 589999999987665 578888865543332222222345556
Q ss_pred ecCCCceEEE---EeCCC---eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe----------CCCcEEEEeC
Q 008496 364 DWRNNVSFAT---SSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS----------DDVTAKIWNM 427 (563)
Q Consensus 364 ~~~~~~~~~~---~~~d~---~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s----------~dg~i~iwd~ 427 (563)
.|.+...+++ ...++ .+.+..+...+.+++-.-|+-.=..+-|-.+|.+|+.-- .-..+.|+.+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 6655432221 11111 234444444444443333322223456666777765321 1123556666
Q ss_pred CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCC-C---eEEEEecCCCCCEEEEEEcCC
Q 008496 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT 502 (563)
Q Consensus 428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~-~---~~~~~~~~h~~~i~~l~~spd 502 (563)
+..........-...|...+|-|.|. ...+++|-. -.++.+|-+++ + +++..+. ....+.+.|||-
T Consensus 433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk 503 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK 503 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence 55443222333456788999999885 233444432 35788887763 2 2233333 245688999999
Q ss_pred CCEEEEE---eCCCcEEEEecCCCeeEEE-EecCCCEEEEEEcCCCCEEEEEECCCe------EEEEEee
Q 008496 503 GEYLASG---SLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHT------VCVLDFR 562 (563)
Q Consensus 503 g~~lasg---s~dg~v~iw~~~~~~~~~~-~~~~~~i~~l~w~~~g~~la~~~~~~~------v~v~~~~ 562 (563)
|++++.+ |..|.+.++|+....+..+ ...+...+.+.|+|.|+++.+|++... -.+|+|+
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999875 4578899999874332222 123445678999999999999977543 3556654
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-10 Score=113.55 Aligned_cols=293 Identities=17% Similarity=0.327 Sum_probs=183.4
Q ss_pred ceEEEEECCCCCEEEEe-----eCCCc-----EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC
Q 008496 217 EVCACAWSPAGSLLASG-----SGDST-----ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (563)
Q Consensus 217 ~V~~~~~sp~~~~latg-----s~D~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g 286 (563)
.++++-|||-|.+|.|- ..|++ +++|++.++.... ........-++..|+.|.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s-----------------~~q~k~Q~~W~~qfs~dE 137 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS-----------------QIQKKMQNGWVPQFSIDE 137 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh-----------------heehhhhcCcccccccch
Confidence 67889999999998762 12332 4467665421100 000001111577888886
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCC--CEEEE-----eeCCCcEEEEECCCCceeEE---eeec
Q 008496 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG--DYLLT-----GSCDKTAIVWDVKTEEWKQQ---FEFH 356 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~D~~v~iwd~~~~~~~~~---~~~~ 356 (563)
.+. .--..+.+.+|+..+.....-.-|...|+.+.++|.+ ..+++ .+.-..|+||-..-....+. -.+.
T Consensus 138 sl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 138 SLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 543 3334578999998774444444567788899999874 23332 45566899997652221111 1111
Q ss_pred ccCeEEEecCCC--ceEE--EEeC---------CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe--CCCc
Q 008496 357 SGPTLDVDWRNN--VSFA--TSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVT 421 (563)
Q Consensus 357 ~~~~~~~~~~~~--~~~~--~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s--~dg~ 421 (563)
...-..+.|... ..++ +..- ..++++..+........+. ..++|.++.|+|+++-++.+. .--+
T Consensus 217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccce
Confidence 222344556422 2222 2222 2356777766444333332 478999999999998876654 4567
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA 498 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~l~ 498 (563)
+.|+|++- .++..+ ..++-.++-|+|.|. +|+.+++ -|.|-|||+.+.+++..+..-. -+-..
T Consensus 296 vtifnlr~-~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e 361 (566)
T KOG2315|consen 296 VTIFNLRG-KPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE 361 (566)
T ss_pred EEEEcCCC-CEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence 88999763 455544 456778899999885 4555554 3789999999988888776543 35678
Q ss_pred EcCCCCEEEEEeC------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 008496 499 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 499 ~spdg~~lasgs~------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~ 543 (563)
|+|||.+++|++. |+.++||+. +|+++....-....+.++|-|-
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence 9999999998875 678999998 4666654433335778888864
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=8.2e-11 Score=109.72 Aligned_cols=238 Identities=17% Similarity=0.271 Sum_probs=164.7
Q ss_pred CCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCCceeEEe------eecccCeEEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496 316 GPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387 (563)
Q Consensus 316 ~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 387 (563)
..|.++.|..++ ..|+.++.|..+.........+.... .+...++..+.. .+..+++|-.+|.+.+|....
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence 345666665444 33555556666666655544433322 122223333322 345677888899999998862
Q ss_pred C----cceeeecCCCcceeEEEECCCCC-EEEEEeCC--CcEEEEeCCCCceeeeecccC---------CCEEEEEEccC
Q 008496 388 N----RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT 451 (563)
Q Consensus 388 ~----~~~~~~~~h~~~i~~~~~~~~~~-~las~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~p~ 451 (563)
+ .+...+..+ ..+..+.-++..+ ++|+|+.. ..++|||+.+.+.+.+-+.-. -.++.+.|-|.
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 2 223333333 2344455555444 56679998 889999998886554332211 23566677664
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-E
Q 008496 452 GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y 529 (563)
Q Consensus 452 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~ 529 (563)
.. +..+|++..-+.||+||.+.++ ++..+.--..+|+++...|+|++|.+|..-|.+..||.+.++++.. +
T Consensus 214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 22 2468999999999999999764 5666766678999999999999999999999999999999998766 5
Q ss_pred ec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 530 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 530 ~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.+ .++|.++--+|.+..||.|+-|..|+|+|++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 54 5678999999999999999999999999986
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=9.2e-10 Score=109.21 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=169.7
Q ss_pred CEE-EEEeCCCeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 287 TLL-ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 287 ~~l-~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+++ ++-..+|.|.+.|... +....+......-..+.|+|+|+++++++.|+.|.++|+.+.+.+.++.....+ ..+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEE
Confidence 344 4555679999999764 455666654444456789999999999999999999999999988887664443 3444
Q ss_pred cCC--CceEEEEeCCCeEEEEEcCCCcceeeecCC-------CcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCCceee
Q 008496 365 WRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVH 434 (563)
Q Consensus 365 ~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~~~~~ 434 (563)
... ...++++...+.+.++|..+.++++.+... ...+.++..+|....++..-. .+.|.+-|......+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 433 344556678899999999998888876532 345778888888885555544 5777777876554332
Q ss_pred -eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec----CCCCCEEEE-------EEc--
Q 008496 435 -DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSL-------AFS-- 500 (563)
Q Consensus 435 -~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~l-------~~s-- 500 (563)
.............|.|+++ +++++....+.|-++|..+++.+..+. .|..++..+ .|.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgr--------y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGR--------YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSS--------EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred eeeecccccccccccCcccc--------eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 2222344567788988875 466667778899999999998876653 243444332 232
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE----ECCCeEEEEEee
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC----FANHTVCVLDFR 562 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~----~~~~~v~v~~~~ 562 (563)
..+.+.++.-....+.+|+..+++.++++...++-.-+.-+|++++|.+. -...+|+|+|.+
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22334323222345778999999999999876655888899999999998 334789999865
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=3.5e-08 Score=98.07 Aligned_cols=265 Identities=15% Similarity=0.249 Sum_probs=163.6
Q ss_pred EEEEeCC----CeEEEEEcC---Ccee--EeeccCCCCEEEEEeCCCCCEEEEeeC----CCcEEEEECCCC--ce--eE
Q 008496 289 LATGSYD----GQARIWSTN---GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EW--KQ 351 (563)
Q Consensus 289 l~sg~~d----g~i~vw~~~---~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~--~~ 351 (563)
+++|+++ +.|.+|..+ +.+. .... -......|+++|++++|++... ++.|..|.+... .+ +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556665 678888762 2221 1222 2234456889999999998876 468888887653 33 22
Q ss_pred EeeecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCccee----eec----------CCCcceeEEEECCCCCEEEE
Q 008496 352 QFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIK----TFA----------GHQGEVNCVKWDPTGSLLAS 415 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~----------~h~~~i~~~~~~~~~~~las 415 (563)
...........+... ....+++.-.++.+.++++.....+. .+. .-.....++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 333223333344443 33345555678999999998743221 111 11234678999999998877
Q ss_pred EeC-CCcEEEEeCCCCc--ee--eeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EE
Q 008496 416 CSD-DVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LY 485 (563)
Q Consensus 416 ~s~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~ 485 (563)
+.. ...|.+|++.... .. ..+. .....-..+.|+|++. .+.+..-.+++|.++++. .+.. +.
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEE
Confidence 643 4479999887654 21 2222 2234457788988764 456677889999999987 4533 22
Q ss_pred EecC----C--CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecC--CCe--eEEEEec-CCCEEEEEEcCCCCEEEEEE-C
Q 008496 486 SLNG----H--REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGK--IVKTYTG-NGGIFEVCWNKEGDKIAACF-A 552 (563)
Q Consensus 486 ~~~~----h--~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~--~~~--~~~~~~~-~~~i~~l~w~~~g~~la~~~-~ 552 (563)
.+.. . ......|++||||++|.++. ..+.|.+|++. +|+ .+..+.. .....+++++|+|++|+++. .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 2221 1 12578899999999987655 56789999993 344 3444443 33478999999999998875 5
Q ss_pred CCeEEEEEee
Q 008496 553 NHTVCVLDFR 562 (563)
Q Consensus 553 ~~~v~v~~~~ 562 (563)
++.|.||++.
T Consensus 313 s~~v~vf~~d 322 (345)
T PF10282_consen 313 SNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 6689999874
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1e-10 Score=105.19 Aligned_cols=181 Identities=19% Similarity=0.299 Sum_probs=134.1
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecCCCc------ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeecccCCC
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFAGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE 442 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~------~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 442 (563)
++.....|.|.++..........+++-.. ...++.|++.+.-++++-.+|.+.+-+...... ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 34556677787777665544444443221 245789999999999999999998666554443 3377889999
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE-ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-dg~~lasgs~dg~v~iw~ 519 (563)
+....|+.... .++.+|+.|+.+..||++ .++.++. .+-|...|.+|.-|| .+.+|+||+.|-.|++||
T Consensus 168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 99988865432 388999999999999999 4556665 566888999998886 478999999999999999
Q ss_pred cCC-CeeEEEEecCCCEEEEEEcCCC--CEEEEEECCCeEEEEE
Q 008496 520 LKE-GKIVKTYTGNGGIFEVCWNKEG--DKIAACFANHTVCVLD 560 (563)
Q Consensus 520 ~~~-~~~~~~~~~~~~i~~l~w~~~g--~~la~~~~~~~v~v~~ 560 (563)
.++ ++.+..-.-.++|+-+.|+|.- ..||+|..+| ..|.+
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 984 5666655556899999999964 4667776665 34444
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=4.3e-11 Score=124.53 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=155.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
+.|+.+.+.-....++.+..+..+-||+...+......+...... ......+-.+++.-++++|+.-
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence 345556667778888999999999999987654322211111100 0112333456777899999999
Q ss_pred CeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEecCCCceEEE
Q 008496 296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 296 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
+.|.+|......+. .+.+|.+.|+.+.|+-+|.+++++|.|+++++|++.+.+... ....|...+..+.+.++ .+++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t 233 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT 233 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence 99999997654433 489999999999999999999999999999999999887665 55678888888888777 8999
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
.+.|-+.++|+... .....+.+|.+ .|..++..++...++|+++|+.+++|++..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999996543 33447888876 489999999999999999999999999754
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=2.4e-09 Score=117.66 Aligned_cols=274 Identities=14% Similarity=0.246 Sum_probs=173.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEE----EcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCce
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 349 (563)
...|.++.+-++...++.+..+|.|.+. +.+.........-...|.+++||||+..|+....++++.+-+ ++.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 4679999999999999999999999999 554444444444567899999999999999999899988764 34444
Q ss_pred eEEeeecc-----cCeEEEecCCC-ceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcceeEEEECCCCCEEEEEeC--
Q 008496 350 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD-- 418 (563)
Q Consensus 350 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~~~~~~~~~~las~s~-- 418 (563)
+.....+. ...+.+.|-.. ..|=...+...-+- ......| ...+. +...-..++|..||.++|+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~-~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ-LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh-ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 43333222 23345555332 12211110000000 0000001 11222 3445568999999999998774
Q ss_pred -C---CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEe----
Q 008496 419 -D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL---- 487 (563)
Q Consensus 419 -d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~---- 487 (563)
. ..+|||+-. +.....-..-.+--.+++|.|.|. ++|+... ...|.+|. ++|-....+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence 3 478999844 443332222233345789999885 6666543 34566665 334333222
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEE--EecCCCEEEEEEcCCC-CEEEEEECCCeEEEEEee
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~--~~~~~~i~~l~w~~~g-~~la~~~~~~~v~v~~~~ 562 (563)
......|..+.|++|+..||..-.|. |.+|-..+.. +.+. +.....+..+.|+|.. ..|.+...++.+.+++|.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 23456799999999999999977665 9999998865 2222 2334445569999964 578888887888777663
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=9e-10 Score=110.06 Aligned_cols=223 Identities=18% Similarity=0.359 Sum_probs=153.5
Q ss_pred eEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.+|.||...|..+.|+...+.|-|...+|.|.+|-+..+...... ..+...+.|.+++|+.||+.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------iNnRnKSvV~SmsWn~dG~k 129 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------INNRNKSVVVSMSWNLDGTK 129 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------hhCcCccEEEEEEEcCCCcE
Confidence 578999999999999999999999999999999998766422110 01123456899999999999
Q ss_pred EEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-------e-eE---Eeee
Q 008496 289 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-------W-KQ---QFEF 355 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~-~~---~~~~ 355 (563)
+.....||.|.+=.++|.... .+.+. -...+.|+++...++.+-..|.+.++|.+..- + +. .+..
T Consensus 130 IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 999999999988877765332 12221 12468899999999999999999999965321 1 10 0110
Q ss_pred cccCeEEEecC---------CCceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCC-----
Q 008496 356 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----- 420 (563)
Q Consensus 356 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg----- 420 (563)
....+-.+.|. +.-.++.|-.+|.+.+..-.+. .|+..-.| -.+..+.|+++|..||.|+.+.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 11123445563 2346888888888877655433 34332222 4678899999999999998753
Q ss_pred ----cEEEEeCCCCceeeeecccCCCEEEEEEccC
Q 008496 421 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (563)
Q Consensus 421 ----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 451 (563)
.|.+|. .-+..+.+++.....|++++|-..
T Consensus 286 ~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 286 TDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred cccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence 344443 234456677777788888888543
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.7e-10 Score=109.08 Aligned_cols=274 Identities=18% Similarity=0.291 Sum_probs=170.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCC-----------CcEEEEECC
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK 345 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~v~iwd~~ 345 (563)
-+-+.|||.|.||+|--.-| |.+|--..-....--.|.+ |.-+.|||+.+||+|-+.. ..++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 46789999999999876644 7788543221112223554 6778999999999986631 479999999
Q ss_pred CCceeEEeeecccCe---EEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---C
Q 008496 346 TEEWKQQFEFHSGPT---LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---D 419 (563)
Q Consensus 346 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---d 419 (563)
+|...+.|....++. .-+.|..+..+.+.-..+.|.++....-.++..-.-.-..|....|+|.+.+||-=+. +
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 999998887743332 2357887777777766688888876542221110111235777899999998874322 1
Q ss_pred --CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE----------EeCCCeEEEEeCCCCeEEEEe
Q 008496 420 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL 487 (563)
Q Consensus 420 --g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s----------~s~dg~i~iwd~~~~~~~~~~ 487 (563)
..+.+-.+-+++.+++-.-|.-.=..+.|...|. +|+. .+.-..+-|+.++........
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 1344455555554444333332333466766554 3321 111223455555433221112
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCC-C---eeEEEEecCCCEEEEEEcCCCCEEEEE---ECCCeEE
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE-G---KIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC 557 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~---dg~v~iw~~~~-~---~~~~~~~~~~~i~~l~w~~~g~~la~~---~~~~~v~ 557 (563)
-....+|...+|-|.|..+++-+. ..++.+|.+++ . ++++.+.. ...+.+.|+|.|..++++ +..|.+.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence 224567889999999987775443 35788998873 2 34555544 345789999999988866 4467888
Q ss_pred EEEee
Q 008496 558 VLDFR 562 (563)
Q Consensus 558 v~~~~ 562 (563)
.+|..
T Consensus 521 F~D~~ 525 (698)
T KOG2314|consen 521 FYDTD 525 (698)
T ss_pred EEecc
Confidence 88753
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=5.5e-10 Score=109.80 Aligned_cols=224 Identities=19% Similarity=0.260 Sum_probs=149.8
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCcCCCCC----CCceEEEEEeeecccccCCCCeEEEEE----CCCCCEEEEEeCCC
Q 008496 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQN----GPLNVLVLKHVKGRTNEKSKDVTTLDW----NGEGTLLATGSYDG 296 (563)
Q Consensus 225 p~~~~latgs~D~~i~iW~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~V~~l~~----s~~g~~l~sg~~dg 296 (563)
|...++|....||.+|||+...++....... ...+......+.... .....+++.| +.+-..++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999876543211110 000000000000000 0001111111 33456788899999
Q ss_pred eEEEEEcCC-ceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEE
Q 008496 297 QARIWSTNG-DLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373 (563)
Q Consensus 297 ~i~vw~~~~-~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (563)
.|.+|+..+ ++...+ .+|.++|.++.|+.+-..|.|++.|+.+..|+......++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---------------------- 138 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---------------------- 138 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee----------------------
Confidence 999999764 454444 4799999999999999999999999999999987654332
Q ss_pred EeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (563)
Q Consensus 374 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 453 (563)
+| .+....+.+++++|||+.++++| +.|++||+++++.+..|.+|.++|.++.|...-.
T Consensus 139 --------~~-----------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 139 --------IW-----------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred --------ee-----------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 22 22334567899999999999886 5899999999999999999999999999976511
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEecCCCCCEEE
Q 008496 454 GTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHREPVYS 496 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~i~~ 496 (563)
+ ..+.++|.+...+.-|.+|-++. +...+.+.....||+.
T Consensus 198 g---~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ 241 (541)
T KOG4547|consen 198 G---IIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTS 241 (541)
T ss_pred c---cccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEe
Confidence 1 12345788888888889997653 2233444444445443
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.5e-10 Score=116.13 Aligned_cols=215 Identities=16% Similarity=0.216 Sum_probs=129.7
Q ss_pred CCeEEEEECCCCCEEEEEeCC-C--eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEE-eeCCCc--EEEEECCCCc
Q 008496 275 KDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTEE 348 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~d-g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--v~iwd~~~~~ 348 (563)
..+.+..|||||+.|+..+.+ + .|.+|+..+.....+....+......|+|+|+.|+. .+.++. |.+||+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 457788999999999876543 3 578888765443334333344457899999998864 455554 4555554443
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCc--EEEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~--i~iw 425 (563)
. ..+..+.......+|+|||+.|+..+. ++. |.++
T Consensus 298 ~------------------------------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 298 L------------------------------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred e------------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 2 112223334456889999998876654 444 5556
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
|+.+++.. .+...........|+|+|. .++++...++ .|.++|+.+++.. .+... ......+|+|||
T Consensus 336 dl~~g~~~-~Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG 404 (448)
T PRK04792 336 NLASGKVS-RLTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG 404 (448)
T ss_pred ECCCCCEE-EEecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence 77666543 2222222334568888875 2444444455 4555687777643 23322 122345899999
Q ss_pred CEEEEEeCC-C--cEEEEecCCCeeEEEEec-CCCEEEEEEcCC
Q 008496 504 EYLASGSLD-K--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 543 (563)
Q Consensus 504 ~~lasgs~d-g--~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~ 543 (563)
++|+..+.+ + .+.+++. +|+....+.. .+.+...+|+|-
T Consensus 405 ~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 405 TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 988765543 3 3677776 5555555543 345678899873
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=1.7e-08 Score=111.10 Aligned_cols=322 Identities=14% Similarity=0.281 Sum_probs=196.1
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeC
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~ 294 (563)
.+.|.++.|-++...|+.+..+|-|.+........ ........ .-...|.+++||||+.+|+..+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-------~~~~E~VG-------~vd~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-------EDEIEIVG-------SVDSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-------CceeEEEE-------EEcCcEEEEEECCCcCEEEEEeC
Confidence 36788999999988888888889888883221000 00111111 12457999999999999999999
Q ss_pred CCeEEEEEcCC------------------------ceeEeecc------------------------CCCCEEEEEeCCC
Q 008496 295 DGQARIWSTNG------------------------DLKCTLSK------------------------HKGPIFSLKWNKK 326 (563)
Q Consensus 295 dg~i~vw~~~~------------------------~~~~~~~~------------------------h~~~V~~l~~~~~ 326 (563)
+|++.+-+.+- +....|.| +...-..++|..|
T Consensus 141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD 220 (928)
T PF04762_consen 141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD 220 (928)
T ss_pred CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC
Confidence 99887764211 01111111 1123356889999
Q ss_pred CCEEEEeeC---C---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCC----CeEEEEEcCCCcceeee--
Q 008496 327 GDYLLTGSC---D---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD----NMIYVCKIGENRPIKTF-- 394 (563)
Q Consensus 327 ~~~l~s~s~---D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~~~~~-- 394 (563)
|.+|++.+. . +.++||+-+ |.+...-+...+--..++|++...++++... ..|.+|.. ++-.-..|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l 298 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTL 298 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEec
Confidence 999988764 2 579999854 6655544433344456789887776555432 23444433 22222222
Q ss_pred --cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeeccc-CCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 395 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 395 --~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
......|..+.|++|+..||..-.|. |.+|-..+.... +.+... ...+..+.|+|... ..|.....
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L~v~t~ 369 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRLHVLTS 369 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEEEEEec
Confidence 23455789999999999999977665 999987765432 223221 23344588988643 23344444
Q ss_pred CCeEEEEeC----CCC--------eEEEEec-----------------------CCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008496 470 DSTVKLWDV----ELG--------KLLYSLN-----------------------GHREPVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 470 dg~i~iwd~----~~~--------~~~~~~~-----------------------~h~~~i~~l~~spdg~~lasgs~dg~ 514 (563)
+|.+..++. ..+ ..+..+. ....+|.+++|++++..+|+-..||.
T Consensus 370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~ 449 (928)
T PF04762_consen 370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGS 449 (928)
T ss_pred CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCC
Confidence 455544332 111 0111111 12467999999999988999999999
Q ss_pred EEEEecCCCe--------eEEEEe-----------cCCCEEEEEEcCCCCEEEEEECC---CeEEEEEe
Q 008496 515 MHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 561 (563)
Q Consensus 515 v~iw~~~~~~--------~~~~~~-----------~~~~i~~l~w~~~g~~la~~~~~---~~v~v~~~ 561 (563)
|.+|...... +...+. ....+..++|-.+...++....+ ..+.++++
T Consensus 450 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 450 LSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred EEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 9999854321 111111 12346789999888777766554 45555554
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.31 E-value=2.7e-09 Score=103.03 Aligned_cols=300 Identities=16% Similarity=0.258 Sum_probs=190.0
Q ss_pred CceEEEEECCCCCEEEEeeCCCc---------------EEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeE-E
Q 008496 216 SEVCACAWSPAGSLLASGSGDST---------------ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-T 279 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~---------------i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ 279 (563)
..|.-+.|||.+++|.|-+..+. +.+||+.++..... +... ....... -
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s-------------f~~~--~q~~~~Wp~ 136 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS-------------FNGI--SQPYLGWPV 136 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-------------cccc--CCcccccce
Confidence 45788899999999999765444 78888776543211 1111 0111133 5
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCE--EEE-----eeCCCcEEEEECCCCce
Q 008496 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDY--LLT-----GSCDKTAIVWDVKTEEW 349 (563)
Q Consensus 280 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~--l~s-----~s~D~~v~iwd~~~~~~ 349 (563)
+.|+-+..++|-- ....+.|++..+... ....| ...|....|+|.++. |+. .+.++++++|.+..+..
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 6788887776644 345788888633221 11111 245777788887543 332 56778999999887666
Q ss_pred eEEeeecccCeEEEecCCCceEEEE-------e-----CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 350 KQQFEFHSGPTLDVDWRNNVSFATS-------S-----TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
+.+-.+....-..+.|.....+.++ + +...++++++.... +.....-.++|...+|.|.++.+++++
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence 6555444445556677654433221 1 23467888886432 333335578999999999999887766
Q ss_pred --CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEE-EecCCC
Q 008496 418 --DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLY-SLNGHR 491 (563)
Q Consensus 418 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~h~ 491 (563)
.+-++.++|++.. .+. ....+.-.++.|+|.+. +++.++.| |.|-+||......+. .+.+.
T Consensus 294 g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r---------~il~agF~nl~gni~i~~~~~rf~~~~~~~~~- 360 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHER---------YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL- 360 (561)
T ss_pred cccccceeecccccc-eEE--ecCCcccccccccCccc---------EEEEecCCccccceEEeccCCceEEEEEeecC-
Confidence 5788899998766 332 23444556777888764 45555554 789999987554443 55543
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 492 EPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs------~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
...-+.|||||+++-+.. -|..|+||++....+- ..+.+.|.|.|...-+.+...
T Consensus 361 -n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 361 -NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence 235567999999987654 3678999998643322 456778888887666555443
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=133.02 Aligned_cols=201 Identities=17% Similarity=0.334 Sum_probs=154.5
Q ss_pred ecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
++.|-..|.++.=||...+.+||+.||.+++|....+. .+.+.+. .+ ...|+.+.|+.+|+.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCcee
Confidence 34455678888889999999999999999999986543 2222222 12 26699999999999999
Q ss_pred EEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee---CCCcEEEEECCCCceeEEeeecccCeEEEecCC
Q 008496 291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 291 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 367 (563)
.+..||.+.+|..+.+.....+.|.......+|-. ..+++++ .++.+.+||..-..
T Consensus 2268 i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------------------- 2326 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------------------- 2326 (2439)
T ss_pred eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc-------------------
Confidence 99999999999999888888889998888888865 4556554 35678888842110
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
....+. ..|.+.++++++-|..++|+||+.+|.|.+||++..+.++.++.
T Consensus 2327 -------------------~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------- 2376 (2439)
T KOG1064|consen 2327 -------------------MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------- 2376 (2439)
T ss_pred -------------------ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------
Confidence 000111 56889999999999999999999999999999998888777654
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 488 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 488 (563)
+. .+.++++|+..|.|+||++..-..++++.
T Consensus 2377 ~~----------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD----------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh----------hhheeeccCcccceEEEEccccchhhcCc
Confidence 11 12378999999999999998776666653
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=2.1e-07 Score=92.55 Aligned_cols=258 Identities=13% Similarity=0.231 Sum_probs=158.7
Q ss_pred CCeEEEEECCCCCEEEEEeC----CCeEEEEEcCC---cee--EeeccCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008496 275 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 344 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~----dg~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~ 344 (563)
.....|+++|++++|.+... +|.|..|..+. .+. ............++.+|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567889999999999877 46888887653 332 22322334456789999999998876 5899999999
Q ss_pred CC-CceeEEe--eec-----------ccCeEEEecCCCc--eEEEEeCCCeEEEEEcCCCcc-e---eeec-CCCcceeE
Q 008496 345 KT-EEWKQQF--EFH-----------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP-I---KTFA-GHQGEVNC 403 (563)
Q Consensus 345 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~-~---~~~~-~h~~~i~~ 403 (563)
.. +...... ..+ ......+.+.++. .+++.-....|++|++..... + ..+. ......+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 4433321 111 1124455565443 344444556788888876541 1 2222 22334678
Q ss_pred EEECCCCCEEEEE-eCCCcEEEEeCC--CCce--eeeecc----c--CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496 404 VKWDPTGSLLASC-SDDVTAKIWNMK--QDKY--VHDLRE----H--SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472 (563)
Q Consensus 404 ~~~~~~~~~las~-s~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~ 472 (563)
+.|+|+++++... -.+++|.++++. .+.. +..+.. . ......|+++|+|. .+.++.-..++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s 268 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS 268 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence 9999999987554 458889999887 3322 111111 1 12467788888875 46667777889
Q ss_pred EEEEeCC--CCeE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec--CCCeeEEEEe--cCCCEEEEEE
Q 008496 473 VKLWDVE--LGKL--LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTYT--GNGGIFEVCW 540 (563)
Q Consensus 473 i~iwd~~--~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~--~~~~~~~~~~--~~~~i~~l~w 540 (563)
|.+|++. ++++ +..+......-..++++|+|++|+++. .++.|.+|++ .+|.+...-. .-....++.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999983 3433 333332233468999999999998877 5678999976 5776544321 2334455554
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=2.1e-10 Score=103.79 Aligned_cols=266 Identities=20% Similarity=0.414 Sum_probs=167.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc------eeEeeccCC------------CCEEEEEeCCCC--CEEEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKG--DYLLTG 333 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~--~~l~s~ 333 (563)
..-|+++.|...|.+|++|...|.|.++..+.. ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 356999999999999999999999999975432 223456664 357888887655 457777
Q ss_pred eCCCcEEEEECCCCceeEE--------eeec-ccCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcceeee-cCCCccee
Q 008496 334 SCDKTAIVWDVKTEEWKQQ--------FEFH-SGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 402 (563)
Q Consensus 334 s~D~~v~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~ 402 (563)
+.|++|++|.+......-. +... .+++....- ..+- .+.-|..|. .+|.+.+ ..|.-.|+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iia------a~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIA------AKPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEE------eccceeccccceeEee
Confidence 8899999998865432110 1000 111111000 0000 000011111 1233444 56888899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCc---eeeeeccc-----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
++.++.|...++++ +|-.|.+|++.-.. .+..++.| ..-|++..|+|... .++.-.+..|.|+
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik 247 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK 247 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence 99999998887655 67789999875321 23334443 23467777877643 3566677789999
Q ss_pred EEeCCCCe------EEEEe--c--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-eeEEEEec------
Q 008496 475 LWDVELGK------LLYSL--N--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIVKTYTG------ 531 (563)
Q Consensus 475 iwd~~~~~------~~~~~--~--------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-~~~~~~~~------ 531 (563)
+-|++... .+... . +-...|..+.|+|+|+||++-+.- +|+|||+... .++++...
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHH
Confidence 99998321 12211 1 122468889999999999986654 7999999764 35666532
Q ss_pred -------CCCEE---EEEEcCCCCEEEEEECCCeEEE
Q 008496 532 -------NGGIF---EVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 532 -------~~~i~---~l~w~~~g~~la~~~~~~~v~v 558 (563)
+..|+ .+.|+.|.+.+.+|+-+...-+
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 34454 6899999888888755444433
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.4e-09 Score=107.92 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=125.3
Q ss_pred cEEEEECCCCceeEEeeecccCeEEEecCCCce---EE-EEeCC--CeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS---FA-TSSTD--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~d--~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 411 (563)
.|.+.|...+... .+.........-.|.++.. |+ ++..+ ..|++.++..+...+ +....+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 4555555443322 2333333445557776632 32 33333 358888887654322 222333445689999999
Q ss_pred EEEEEeC-CC----cEEEEeCCCC---ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCC-
Q 008496 412 LLASCSD-DV----TAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--DVEL- 480 (563)
Q Consensus 412 ~las~s~-dg----~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~- 480 (563)
.||..++ +| .+.+|++..+ ........+........|+|+|. .++.+...+|...|| ++..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC--------EEEEEECCCCCceEEEEECccc
Confidence 8876653 23 3444676542 22222222223346789999986 234444456765555 4432
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC---C
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---H 554 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~---~ 554 (563)
+.....+..+...+...+|||||++|+..+.+ ..|.+||+.+++..........+..+.|+|||+.|++...+ .
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 23344455455567789999999999876543 46999999988765444343456789999999998865432 3
Q ss_pred eEEEEEe
Q 008496 555 TVCVLDF 561 (563)
Q Consensus 555 ~v~v~~~ 561 (563)
.+.++|+
T Consensus 396 ~L~~vdl 402 (428)
T PRK01029 396 ELYLISL 402 (428)
T ss_pred eEEEEEC
Confidence 4666665
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=5.8e-08 Score=98.19 Aligned_cols=293 Identities=14% Similarity=0.136 Sum_probs=174.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc-C
Q 008496 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-N 304 (563)
Q Consensus 226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~ 304 (563)
.+..++.++.++.+.-+|..+|+..-... .... . ... .. .++..++.++.+|.+..+|. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----------~~~~--~-~~~---p~--v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-----------LDER--L-SGG---VG--ADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-----------CCCC--c-ccc---eE--EcCCEEEEEcCCCEEEEEECCC
Confidence 36678888889999999987765321100 0000 0 011 11 24667888889999999997 4
Q ss_pred CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE-----EEecCCCceEEEEeCCCe
Q 008496 305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM 379 (563)
Q Consensus 305 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ 379 (563)
|++....... +.+.+.-.. .+..++.++.++.+..||.++++.+-.+........ .....+ ..++.+..++.
T Consensus 125 G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~ 201 (377)
T TIGR03300 125 GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK 201 (377)
T ss_pred CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence 6665443321 222211001 245777788899999999999887655543221110 000112 34556667788
Q ss_pred EEEEEcCCCcceeeecCC-----Cc--c---e-eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496 380 IYVCKIGENRPIKTFAGH-----QG--E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (563)
Q Consensus 380 i~~~~~~~~~~~~~~~~h-----~~--~---i-~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 448 (563)
++.++..+++.+-..... .. . + .+..+ .+..+..++.+|.+..||..+++.+...... .......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~ 277 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV 277 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE
Confidence 888888776544332110 00 0 0 11111 2456777888999999999988766543311 0011111
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
. ++ .+..++.||.|..+|..+|+.++....... ...+... .+..|++++.+|.|.++|..+|+++.
T Consensus 278 --~-------~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 278 --D-------DN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --e-------CC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 0 11 355677899999999999998876632211 1222222 46688899999999999999999998
Q ss_pred EEecCC-CEE-EEEEcCCCCEEEEEECCCeEEEE
Q 008496 528 TYTGNG-GIF-EVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 528 ~~~~~~-~i~-~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
.+...+ .+. ..... ++.|.++..||.|..|
T Consensus 345 ~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence 887544 222 22222 3468888889887544
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=1.6e-08 Score=113.32 Aligned_cols=249 Identities=12% Similarity=0.117 Sum_probs=159.0
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCCceeEeecc--C------------CCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008496 278 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGSC-DKTAIV 341 (563)
Q Consensus 278 ~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s~-D~~v~i 341 (563)
..+++++. |.++++-+.++.|++|+.+|.....+.. . -....+++++++++.|+.+.. .+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45788874 6677777888999999998876554432 1 112477888888887666554 467888
Q ss_pred EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECC-CCCEEEEEeC
Q 008496 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD 418 (563)
Q Consensus 342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~-~~~~las~s~ 418 (563)
+|+.++.. .++... +..+. +...+. ....+ .....++++| ++.++++.+.
T Consensus 651 id~~~~~V-~tlag~------------------G~~g~----~~~gg~~~~~~~l----n~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 651 IDFVNETV-RTLAGN------------------GTKGS----DYQGGKKGTSQVL----NSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred EecCCCEE-EEEecc------------------CcccC----CCCCChhhhHhhc----CCCeEEEEecCCCeEEEEECC
Confidence 88766532 222110 00000 000000 00001 1234789999 5677788888
Q ss_pred CCcEEEEeCCCCceeeeeccc---------------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008496 419 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 483 (563)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 483 (563)
++.|++||..++... .+.+. -.....++++|++. .++++-+.++.|++||+.++..
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence 999999998766432 11110 01234567777653 3566777789999999987653
Q ss_pred EEEecC-------------C--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC----------
Q 008496 484 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---------- 532 (563)
Q Consensus 484 ~~~~~~-------------h--------~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~---------- 532 (563)
.....+ + -..-..++|+|+|..+++-+.+++|++||..++.+.......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 211100 0 012358999999999999899999999999887765332110
Q ss_pred ----CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 533 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 533 ----~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.....++++++|+.+++...|++|++||++
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 135689999999988888899999999974
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.8e-07 Score=90.89 Aligned_cols=239 Identities=13% Similarity=0.107 Sum_probs=144.9
Q ss_pred ECCCCCEEEEEeC----------CCeEEEEEcCC-ceeEeeccC-------CCCEEEEEeCCCCCEEEEee-C-CCcEEE
Q 008496 282 WNGEGTLLATGSY----------DGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV 341 (563)
Q Consensus 282 ~s~~g~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~v~i 341 (563)
+||||+.|.++.. +..|.+||... +....+.-- ......++++|+|++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998888766 68999999764 344334321 11234678999999998766 3 689999
Q ss_pred EECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcce-----eeecCCCcce-eEEEECC-CCCEEE
Q 008496 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI-----KTFAGHQGEV-NCVKWDP-TGSLLA 414 (563)
Q Consensus 342 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-----~~~~~h~~~i-~~~~~~~-~~~~la 414 (563)
.|+.+++.+..+.... ...-+.+.+.. |..-+.|+......++..... ..|.+-...+ ..-.|.+ +|+++.
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999999888776533 22222222222 223334444433333221111 1111100000 0013345 788776
Q ss_pred EEeCCCcEEEEeCCCCce-----eeeecc-------cCCCEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEE
Q 008496 415 SCSDDVTAKIWNMKQDKY-----VHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK 474 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~~-----~~~~~~-------~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~ 474 (563)
.... |+|.+.|+..... ...+.. ..+.+.-++++|++. .++++.-.. .+.|.
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence 6665 9999999644322 211111 111122255555543 233322111 25799
Q ss_pred EEeCCCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCeeEEEEec
Q 008496 475 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 475 iwd~~~~~~~~~~~~h~~~i~~l~~spdg~-~lasgs-~dg~v~iw~~~~~~~~~~~~~ 531 (563)
++|..+++.+..+.- ...+..++|||||+ +|.+.. .++.|.++|+.+++.+++...
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 999999999988763 34789999999999 777665 578899999999999998743
No 270
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=99.21 E-value=2.6e-12 Score=73.32 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=24.7
Q ss_pred cchhhhhHHHHHhcCCceehhcccccc
Q 008496 7 EELNYLVFRYLQESGLLHSAFVLGYEA 33 (563)
Q Consensus 7 ~evN~Li~rYlqE~g~~~sA~~~~~E~ 33 (563)
++||+|||+||+++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999986
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=126.75 Aligned_cols=222 Identities=17% Similarity=0.291 Sum_probs=164.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-CeEEE
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDV 363 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~ 363 (563)
.++.+.....++...-|...+.-. .+..+-..|.++.-+|...+-+||+.||.|++|....+..+-.+..... .+...
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 344555555566666665544322 2344556788888899999999999999999998777666555543322 22222
Q ss_pred ec-CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeCCC---Cceeeee
Q 008496 364 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDL 436 (563)
Q Consensus 364 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~ 436 (563)
.+ .....|..+..||.+.+|.+. .+|......|....+...|-. .++++++ +++.+.+||..- ..+++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence 23 345678889999999999987 678888888988888887764 6677654 478899999642 22344
Q ss_pred cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 437 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 437 ~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
..|.+..+++++.|... +|+||+.+|.|++||++..++++.+.. +. ...++++|+..|.|+
T Consensus 2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 68999999999999754 789999999999999998777665543 34 567899999999999
Q ss_pred EEecCCCeeEEEEec
Q 008496 517 IWSLKEGKIVKTYTG 531 (563)
Q Consensus 517 iw~~~~~~~~~~~~~ 531 (563)
||++..-.+++++..
T Consensus 2394 Iw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEccccchhhcCch
Confidence 999998888887764
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=4.4e-09 Score=94.80 Aligned_cols=250 Identities=19% Similarity=0.271 Sum_probs=159.9
Q ss_pred CCCceEEEEECC---CCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 214 HTSEVCACAWSP---AGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 214 h~~~V~~~~~sp---~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
-++.++.+.|.- +|. .|+-+-.+|.|.++....... ...++.+..... ....-.++.|++.+..+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~L~~ls~~ki-~~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVHLRGLSSKKI-SVVEALSLDISTSGTKI 136 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eeeecccchhhh-hheeeeEEEeeccCceE
Confidence 345577777764 344 566667788888887543211 001111111000 01124678999999999
Q ss_pred EEEeCCCeEEEEE-cCCceeE--eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEec
Q 008496 290 ATGSYDGQARIWS-TNGDLKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (563)
Q Consensus 290 ~sg~~dg~i~vw~-~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
+++..+|.+.+-+ ....+.. ....|.-+.+..+|+... +.+++|+.|+.+..||++... .+
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~------------ 201 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TF------------ 201 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ce------------
Confidence 9999999998544 3344433 678999999999998654 578899999999999998221 11
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceeeeecccCCCE
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEI 443 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i 443 (563)
+|. .-+-|...|.++.-+| ...+|+||+.|-.|++||.++ ++++..- .-.+.|
T Consensus 202 ----------------i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGV 256 (339)
T KOG0280|consen 202 ----------------IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGV 256 (339)
T ss_pred ----------------eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccce
Confidence 110 0122666788887776 477899999999999999984 4554432 234789
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--e---EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEE-
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--K---LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMH- 516 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~---~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~- 516 (563)
..+.++|... ..+|+++-..| .+|-+...+ + .....+.|.+-++...|..-..+|||++ .|+.++
T Consensus 257 WRi~~~p~~~-------~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 257 WRIKHHPEIF-------HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQ 328 (339)
T ss_pred EEEEecchhh-------hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceee
Confidence 9999998653 12344444443 666666543 2 3445566777677777754456789876 466644
Q ss_pred EEecCC
Q 008496 517 IWSLKE 522 (563)
Q Consensus 517 iw~~~~ 522 (563)
+|-.-+
T Consensus 329 ~Wl~~t 334 (339)
T KOG0280|consen 329 LWLHIT 334 (339)
T ss_pred eeeecc
Confidence 665433
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=9e-11 Score=113.72 Aligned_cols=182 Identities=21% Similarity=0.369 Sum_probs=130.5
Q ss_pred eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387 (563)
Q Consensus 308 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 387 (563)
.+.+.+|+..|..+.--.+.+.+++++.|++|++|.++... | .+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg----------------------------D------~~~t 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG----------------------------D------EIGT 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc----------------------------C------cccc
Confidence 35677898888887766777889999999999999876431 0 0112
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEE
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA 465 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~ 465 (563)
..+..++..|..+|..+.|-.+.+++++| ||.|.+||.--++++..+.. ..+.+..+..-|+ -+...+++
T Consensus 774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n------v~~~iliA 845 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN------VDRHILIA 845 (1034)
T ss_pred ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc------Ccchheee
Confidence 23445778899999999998888888766 88999999776665443221 1112222222222 12234566
Q ss_pred EEeCCCeEEEEeCCCCeEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496 466 SASFDSTVKLWDVELGKLLYSLN-----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 466 s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~ 531 (563)
.++...+|+++|.+.+.-...++ +....+.+++..|.|+++|.|-..|.|.+.|.++|+++..|..
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 66899999999999876554443 2234588999999999999999999999999999999887754
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=1.1e-06 Score=85.54 Aligned_cols=245 Identities=11% Similarity=0.065 Sum_probs=141.5
Q ss_pred CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeC----------CCcEEEEECCCCceeEEeeecccCe----
Q 008496 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGPT---- 360 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~---- 360 (563)
+.|.+.|... +.+..+..-..|-. + ++|+|+.|+.+.. +..|.+||+.+.+....+.....|-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7888888764 44444543334432 4 8999999887766 6799999999999888776533211
Q ss_pred ---EEEecCCCc--eEEEE-eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE--------eCCCcEEEEe
Q 008496 361 ---LDVDWRNNV--SFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--------SDDVTAKIWN 426 (563)
Q Consensus 361 ---~~~~~~~~~--~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~--------s~dg~i~iwd 426 (563)
..+....+. .++.- ..++.+.+.|+...+.+..+.- |++.++... +.||......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence 122233332 23333 2367777777777766655432 333333322 2233332222
Q ss_pred CCCCceee--eec-ccC--CCEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-----eEEEEecC------
Q 008496 427 MKQDKYVH--DLR-EHS--KEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG------ 489 (563)
Q Consensus 427 ~~~~~~~~--~~~-~~~--~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~------ 489 (563)
+....... ... .+. .++.. -.+.+ .++..+.+|. .|+|.+-|+... +....+..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-------~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSN-------KSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEc-------CCCcEEEEec--CCeEEEEecCCCcceecceeeeccccccccc
Confidence 21111110 000 000 00000 01122 1223344433 399999995432 22222211
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEEEEE-CCCeE
Q 008496 490 -HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHTV 556 (563)
Q Consensus 490 -h~~~i~~l~~spdg~~lasgs~----------dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la~~~-~~~~v 556 (563)
..+.+.-++++|+|+.+..+.. .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.|
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 1223445999999988876431 2579999999999999998878899999999999 777664 57789
Q ss_pred EEEEee
Q 008496 557 CVLDFR 562 (563)
Q Consensus 557 ~v~~~~ 562 (563)
.|+|..
T Consensus 325 sViD~~ 330 (352)
T TIGR02658 325 YIFDAE 330 (352)
T ss_pred EEEECc
Confidence 999974
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=6.4e-08 Score=108.65 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=157.7
Q ss_pred EEEECCC-CCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecc-cccCCCCeEEEEECCCCCEEEEEe-CCC
Q 008496 220 ACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YDG 296 (563)
Q Consensus 220 ~~~~sp~-~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~-~dg 296 (563)
.+++++. +.++++-+..+.|++||............+.... ..+. ....-.....++++++++.|+++. .++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 5788875 6677787888999999975321100000000000 0000 000112357789999888665554 457
Q ss_pred eEEEEEcCCceeEeeccC-----------------CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCCceeEEeeeccc
Q 008496 297 QARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 358 (563)
.|++++..+....++.+- -..-+.++++| ++..+++.+.++.|++||..++... .+.
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~---- 721 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS---- 721 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe----
Confidence 899999766555444221 01236789999 5556677777899999998765421 111
Q ss_pred CeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
.++..... ..... ....-.....++++|+++ ++++-+.++.|++||+.++.......
T Consensus 722 -----------------G~G~~~~~--~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 722 -----------------GDGYERNL--NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred -----------------cCCccccC--CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 01100000 00000 000112356799999988 55667778999999988764321100
Q ss_pred c-------------c--------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--------
Q 008496 438 E-------------H--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------- 488 (563)
Q Consensus 438 ~-------------~--------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------- 488 (563)
+ . -..-..++++++|. ++++-+.++.|++||..++.......
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d 850 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD 850 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence 0 0 00123555555543 56777889999999998776543221
Q ss_pred -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 489 -----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 489 -----~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
+.-.....|+++++|+.+++-+.+++|++||+.+++.
T Consensus 851 G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 851 GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112457899999999999989999999999998865
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.7e-07 Score=94.98 Aligned_cols=201 Identities=13% Similarity=0.070 Sum_probs=120.7
Q ss_pred eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCE-EEEeeCC---CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
.|.+-|.+|.....+.... .+...+|+|+|+. ++..+.+ ..|.++|+.+++....
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-------------------- 228 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-------------------- 228 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------
Confidence 4555556665444444443 7888999999985 5543333 3466667666542211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEE-EEeCC--CcEEEEeCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~la-s~s~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
....+......|+|||+.|+ +.+.+ ..|.++|+.++.. ..+..+........|+
T Consensus 229 ----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 229 ----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV 285 (419)
T ss_pred ----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC
Confidence 11223344577999998665 44434 4567778777653 3344343333456799
Q ss_pred cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 008496 450 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHIW 518 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d---------g~v~iw 518 (563)
|+|. .++.+....+ .|.+.|+..++...... ... ....|||||++|+..+.. ..|.+.
T Consensus 286 PDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 286 EDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 9885 2344443333 57778888776532221 111 234899999998866543 368888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 519 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 519 ~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
|+.++... .+...+.....+|+|||+.|+.....
T Consensus 355 d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 355 STNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEcc
Confidence 88887643 33333333468999999998877543
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.6e-06 Score=81.16 Aligned_cols=258 Identities=15% Similarity=0.212 Sum_probs=161.7
Q ss_pred CCeEEEEEcCC---ce-eEeeccCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECC--CCce--eEEeeecccCeEEE
Q 008496 295 DGQARIWSTNG---DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVK--TEEW--KQQFEFHSGPTLDV 363 (563)
Q Consensus 295 dg~i~vw~~~~---~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~--~~~~--~~~~~~~~~~~~~~ 363 (563)
+..|++|+++. .+ ...+..+.+.++-|+|+|++++|.++..+ |.|..|.+. .|.+ +........+..-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799998763 22 12344566778889999999999988765 566665544 3543 22222223333334
Q ss_pred ecCCC--ceEEEEeCCCeEEEEEcCCCcc---eeeecCCCcc----------eeEEEECCCCCEEEEEeC-CCcEEEEeC
Q 008496 364 DWRNN--VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM 427 (563)
Q Consensus 364 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~----------i~~~~~~~~~~~las~s~-dg~i~iwd~ 427 (563)
+...+ ..|.+.-..+.|.++.+..... ......|.+. +-+..+.|++++|+++.- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 44444 3445555668899998865322 2122234443 778999999999988764 336889999
Q ss_pred CCCceee----eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecC---------CCCC
Q 008496 428 KQDKYVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREP 493 (563)
Q Consensus 428 ~~~~~~~----~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~---------h~~~ 493 (563)
..++... .+ .....-..|.|+|+++ ...+..-.+++|-+|..... ..+..+.. -...
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 8665422 12 2233346788888775 34556677899999998763 22222211 1234
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEecCC--Cee--EEEEecCCC-EEEEEEcCCCCEEEEEECCC-eEEEEEe
Q 008496 494 VYSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFANH-TVCVLDF 561 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~-dg~v~iw~~~~--~~~--~~~~~~~~~-i~~l~w~~~g~~la~~~~~~-~v~v~~~ 561 (563)
..+|..+|||+||.++.. ...|.+|.+.. |++ +......+. .-++.+++.|++|+++..++ .+.||-.
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 678899999999987643 34788888754 332 222233333 56899999999999886644 5677654
No 278
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-08 Score=97.27 Aligned_cols=267 Identities=16% Similarity=0.274 Sum_probs=184.7
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCC----ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCCceeEEeeec
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+-...+++.+++.||.++.|.... .....+..|.+.|.+++.+.++-.+.|.+. |..++++|+.+-..+.-+...
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence 334567999999999999998655 233345678889999999999998999766 999999998776544332221
Q ss_pred ccCeEEEecCCC-----ceE-EEEeCCCeEEEEEcCCCc-ceeee-cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 357 SGPTLDVDWRNN-----VSF-ATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 357 ~~~~~~~~~~~~-----~~~-~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
.-| -.++|... ..+ ++.-.++.+.++|-.... +...+ .-|..+|.++.+++.+..+++....|.|..|...
T Consensus 96 ~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 96 DLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 111 12334321 123 333456788888865443 33333 3488999999999999999999999999999876
Q ss_pred C------Cceee---------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-----
Q 008496 429 Q------DKYVH---------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----- 488 (563)
Q Consensus 429 ~------~~~~~---------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----- 488 (563)
. .+... .+........++.|+|++. .+++-+.|..|++++..+|+++..+.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccchh
Confidence 3 11111 1122334567899999886 46677789999999998887654332
Q ss_pred ---------------------------CCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCE-----
Q 008496 489 ---------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI----- 535 (563)
Q Consensus 489 ---------------------------~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i----- 535 (563)
.|. ..-+.+.|...|++|.-|+.=| |++.++.++.+++.+-....|
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~ 324 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRL 324 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhH
Confidence 111 2335688999999999999887 999999999988877321110
Q ss_pred ---------------------EEEEEcCCCCEEEEEECCCeEEEE
Q 008496 536 ---------------------FEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 536 ---------------------~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
..+.+.+|-..+++++...+..++
T Consensus 325 sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 325 SLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 124467777788887776665544
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.02 E-value=3.6e-07 Score=97.58 Aligned_cols=273 Identities=12% Similarity=0.214 Sum_probs=154.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
...|.++.|-.++..++.+...|.|.+-|...........-.+.|.+++|+|++..++..+.++++.+-+- +...+...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 35799999999999999999999999998776655555556788999999999999998888888766431 11111100
Q ss_pred e-----ecccCeEEEecCCCc-eEEEEeCCCeEEEEE-cCCCcceeeecCCCcceeEEEECCCCCEEEEE-----eCCCc
Q 008496 354 E-----FHSGPTLDVDWRNNV-SFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVT 421 (563)
Q Consensus 354 ~-----~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-----s~dg~ 421 (563)
. ...+....+.|.... .|- ++. |....-+ +...+......-|. .=++|.|--||.++|+. .....
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceeee-cch-hhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCcee
Confidence 0 011122334442211 111 000 0000000 00000000001122 22479999999999883 33378
Q ss_pred EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCC---CCeEEEEecCCCCCEE
Q 008496 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVY 495 (563)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~---~~~~~~~~~~h~~~i~ 495 (563)
|+|||-. +..-..-..-.+.-.+++|-|.|. ++++- ..|+.|.+|.-. -|.....+.....+|.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchh
Confidence 9999966 322111111223346789999875 44442 345678888632 2222222233344589
Q ss_pred EEEEcCCCCEEEE---EeCCCcEEEEecCCCe--eEEEEecCCCEEEEEEcCCCC-EEEEEECCCeEEEEEe
Q 008496 496 SLAFSPTGEYLAS---GSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF 561 (563)
Q Consensus 496 ~l~~spdg~~las---gs~dg~v~iw~~~~~~--~~~~~~~~~~i~~l~w~~~g~-~la~~~~~~~v~v~~~ 561 (563)
.++|+.++..||+ ......|.+|-+.+.. +.+.+.-.... -+.|+|.-. .|.+-..+|...|+||
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence 9999999999997 4445569999988754 22222221111 167777432 2332224556656555
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=5.9e-09 Score=104.75 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=182.1
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC--CEEEEEe
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATGS 293 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~l~sg~ 293 (563)
.++.++..+|.|+-+|.++.-|.. +-|+.+.-. | ...+.+.. .-.|-.+.|++.. .+-++..
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~-------p--pr~l~h~t------pw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT-------P--PRWLHHIT------PWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCC-------C--ceeeeccC------cchhcceecccCCCCceeEEec
Confidence 567889999999988888776644 345543210 0 01122211 1235666777643 3444444
Q ss_pred CCCeEEEEEcC----CceeEeeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCce-eEEeeecccCeEEEecCC
Q 008496 294 YDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRN 367 (563)
Q Consensus 294 ~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 367 (563)
......+|+.. ..+...+.+|...|+.+.|+|+. ..+++++.|-.+..||+++... ...+.........+.|..
T Consensus 89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 55566788753 23445678999999999999976 4678999999999999987542 222322223334455643
Q ss_pred C-ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCCCcee-eeecccCCCE
Q 008496 368 N-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKEI 443 (563)
Q Consensus 368 ~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~i 443 (563)
. ....+++-.+.|++|+.+.+ .|...+++|...|+.++|+.- ...+.+++.|++++.||....... .....-..+|
T Consensus 169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence 2 23344555677999999765 578889999999999998753 356789999999999997643211 1111233456
Q ss_pred EEEEEccCCCCCCC-CC-CcEEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCEEEEEEcCCC----------CEEEEEe
Q 008496 444 YTIRWSPTGSGTNN-PN-QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASGS 510 (563)
Q Consensus 444 ~~~~~~p~~~~~~~-~~-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~l~~spdg----------~~lasgs 510 (563)
..-++-|-|.+... |. +..++.---.+.....|++.+ .+.++++.||...|...-|-..+ --|+|=|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 66666666543210 00 000111111123334455443 46789999999888766664322 2489999
Q ss_pred CCCcEEEEecCC
Q 008496 511 LDKSMHIWSLKE 522 (563)
Q Consensus 511 ~dg~v~iw~~~~ 522 (563)
.|..+++|-+.+
T Consensus 329 kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 329 KDQTLRLWPIDS 340 (1081)
T ss_pred cCCceEeeeccH
Confidence 999999998764
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=7.8e-07 Score=80.80 Aligned_cols=42 Identities=17% Similarity=0.544 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496 490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~ 531 (563)
....|..|+.||||+.||+...+|.|.+|++..-++.+.+..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 456799999999999999999999999999998777776643
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=3.6e-07 Score=92.40 Aligned_cols=259 Identities=10% Similarity=0.053 Sum_probs=157.1
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+..+++++.+|.+..+|. +|+......-......+.. .++..++.++.++.+..+|..+++.+-....... +....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 567888888999999995 5666544332221111111 2467888889999999999999887655443221 11110
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~ 439 (563)
-..+..++....++.++.++..+++.+-.+......+ .+.... +..++.++.++.+..+|..+++.+......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1123455666778999999988777655543322111 111111 246677888899999999888765432211
Q ss_pred CC----CEE---EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 008496 440 SK----EIY---TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 512 (563)
Q Consensus 440 ~~----~i~---~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~d 512 (563)
.. .+. .+.-+|. ..++ .+..++.+|.++.||..+|+.++..... . ..... .++..+..++.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~-----~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPV-----VDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred cCCCCCchhhhhccCCccE-----EECC--EEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCC
Confidence 00 000 0000010 0011 4556778999999999999988876521 1 11222 246678888899
Q ss_pred CcEEEEecCCCeeEEEEec-CCC-EEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 513 KSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~-~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
|.|..+|..+|+.+..+.. ... ...... .|.+|.++..+|.+.++|.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 9999999999998876532 111 122222 46788888889999888753
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=3.5e-07 Score=87.87 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=150.0
Q ss_pred eCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec-------ccCe--------EEEecCCCceEEEEeCCCeEEEEEcCC
Q 008496 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-------SGPT--------LDVDWRNNVSFATSSTDNMIYVCKIGE 387 (563)
Q Consensus 323 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~d~~i~~~~~~~ 387 (563)
.+.+|+.++. +.-|.|.++|+.+..+.. +... ..+. -+....+...++..| .|..++.+...
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 3567888775 345789999988765433 1111 0000 011122233333333 34445555444
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s 466 (563)
+-.++ .+|.+.|.-..+.-+++-++.|..|| .+-|+|..++.. ..+...-+.|.++..+|+|. .++.
T Consensus 351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vv 418 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVV 418 (668)
T ss_pred CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEE
Confidence 33332 36777788888888888889999999 899999888763 34555667899999999986 5777
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 008496 467 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----SMHIWSLKEGKIVKTYTGNGGIFEVCWNK 542 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----~v~iw~~~~~~~~~~~~~~~~i~~l~w~~ 542 (563)
+.....|-+.|+.+|.....-+...+-|+...|||++++||-+--+| .|+++|+.++++....+..+-=++.+|+|
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 77778888889999987655454556799999999999999776554 69999999999887766666567889999
Q ss_pred CCCEEEEEE
Q 008496 543 EGDKIAACF 551 (563)
Q Consensus 543 ~g~~la~~~ 551 (563)
||++|-.-+
T Consensus 499 d~ryLYfLs 507 (668)
T COG4946 499 DGRYLYFLS 507 (668)
T ss_pred CCcEEEEEe
Confidence 999877653
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.96 E-value=6.6e-06 Score=77.76 Aligned_cols=222 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 279 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 279 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+..|.+ ++.++++-...+.|..|+..+.....+.... ..++.+. ++ ..|+.+..++ +.++|+.+++....+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 467887 7778888778899999998877665443333 5677777 55 4555555544 455588877543322110
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC-CCcceeEEEECCCCCEEEEEeCC--------CcEEEEeC
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNM 427 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~las~s~d--------g~i~iwd~ 427 (563)
. .. .....+.++++|+|++.++.... |.+..++.
T Consensus 80 ~-------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 80 D-------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp T-------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred C-------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 0 01 12356788999999988776654 44555665
Q ss_pred CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--C-----eEEEEecCCCCCEEEEEEc
Q 008496 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFS 500 (563)
Q Consensus 428 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~h~~~i~~l~~s 500 (563)
. ++ +..+...-.....|+|+|++. .++++-+..+.|..+++.. + +....+....+..-.+++.
T Consensus 123 ~-~~-~~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 123 D-GK-VTVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp T-SE-EEEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred C-Ce-EEEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 5 33 222333344567899999875 3566778889999998853 2 1122233222336789999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEEEEE-cCCCCEEEEEEC
Q 008496 501 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACFA 552 (563)
Q Consensus 501 pdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~l~w-~~~g~~la~~~~ 552 (563)
.+|++.++.-..+.|.+++.. |+++..+... ..++.++| -++.+.|.+.+.
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 999998888888999999987 8888877655 57899999 467777776543
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.8e-07 Score=91.09 Aligned_cols=192 Identities=14% Similarity=0.058 Sum_probs=113.8
Q ss_pred CeEEEEECCCCCE-EEEEeCC---CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCCc
Q 008496 276 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE 348 (563)
Q Consensus 276 ~V~~l~~s~~g~~-l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~ 348 (563)
......|+|||+. ++..+.+ ..|.+++..+.....+....+.+....|+|+|+.++.. +.++ .|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4667899999984 6655544 46788887766555555566667778899999877643 3232 34444544332
Q ss_pred eeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CC--cEEEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 425 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg--~i~iw 425 (563)
.. .+..+.+......|+|||+.|+-.++ .+ .|.+.
T Consensus 269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 11 11112222234579999987766654 33 46667
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL 497 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~l 497 (563)
|+.++.... +..... ....|+|+|. .++.+.... ..|.+.|+..+.. ..+... ......
T Consensus 307 dl~~g~~~r-lt~~g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p 373 (419)
T PRK04043 307 KLNSGSVEQ-VVFHGK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP 373 (419)
T ss_pred ECCCCCeEe-CccCCC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence 777665532 221111 2248999886 233333332 3688888887754 344432 233458
Q ss_pred EEcCCCCEEEEEeCC-C--cEEEEecCC
Q 008496 498 AFSPTGEYLASGSLD-K--SMHIWSLKE 522 (563)
Q Consensus 498 ~~spdg~~lasgs~d-g--~v~iw~~~~ 522 (563)
.|||||++|+-.+.+ + .+.+.++..
T Consensus 374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999999988765543 2 356666644
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.2e-05 Score=75.45 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=156.3
Q ss_pred CCCceEEEEECCCCCEEEEeeCC---CcEEEEecCC--CCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 214 HTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D---~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
+...++=++|+|+.+.|.++-.+ |.|--|.+.. |.. . .+ .+......+-+.++.+++|++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---------t--~l----n~~~~~g~~p~yvsvd~~g~~ 102 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---------T--FL----NRQTLPGSPPCYVSVDEDGRF 102 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE---------E--Ee----eccccCCCCCeEEEECCCCCE
Confidence 34456678999999998887654 6677776653 211 0 01 111111233378899999999
Q ss_pred EEEEeCC-CeEEEEEcC--CceeE--eeccCCCC----------EEEEEeCCCCCEEEEeeCC-CcEEEEECCCCceeEE
Q 008496 289 LATGSYD-GQARIWSTN--GDLKC--TLSKHKGP----------IFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 289 l~sg~~d-g~i~vw~~~--~~~~~--~~~~h~~~----------V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~ 352 (563)
++++.+. |.|.++-++ |.+.. ....|.++ +....+.|++++|++++.. -.|.+|++..+.+...
T Consensus 103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 9999876 788888753 43322 23445555 8889999999999987642 3577888775543221
Q ss_pred eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEEEEeCCCC-
Q 008496 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD- 430 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~iwd~~~~- 430 (563)
-.. .+ .-...-+-|.|+|++++.....+ +++|.+|..+..
T Consensus 183 ~~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 183 DPA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred ccc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 100 00 01123456899999999876665 999999998763
Q ss_pred ceeeeeccc---------CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeEEE--EecCCCCCEEEE
Q 008496 431 KYVHDLREH---------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKLLY--SLNGHREPVYSL 497 (563)
Q Consensus 431 ~~~~~~~~~---------~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~--~~~~h~~~i~~l 497 (563)
..+..++.+ ....-.|..+|+|+ .+.+|-=....|-+|.+.. +++.. ....+...-...
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCC--------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence 222333221 23456677778775 3334433344777777653 33321 122233334678
Q ss_pred EEcCCCCEEEEEeCC-CcEEEEecC--CCeeEE
Q 008496 498 AFSPTGEYLASGSLD-KSMHIWSLK--EGKIVK 527 (563)
Q Consensus 498 ~~spdg~~lasgs~d-g~v~iw~~~--~~~~~~ 527 (563)
.|+|+|++|+++..+ ..|.+|.+. +|++..
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 899999999988765 468888764 455433
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=5.7e-08 Score=89.60 Aligned_cols=237 Identities=15% Similarity=0.285 Sum_probs=155.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--ceeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC----CC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----KT 346 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~----~~ 346 (563)
...|+....-|...-+++.+.|.++|||-... +... .......+++++.+++....|+.|-..|++.-+.+ +.
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 34455555666667789999999999996422 2111 22234578899999999999999999999887754 44
Q ss_pred CceeEEeeecccCeEEEecCCCc-eEEEEeCCCeE-EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 347 EEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMI-YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i-~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
....+.+..|...+..+-+.-.. .+++.+.|..+ +.+.- .+..+..+. -....+++.+.-. +...|...|.|.+
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e-~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE-SGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQITM 179 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec-cCCcccceE-eeccCCCCceeeE--EEEecccccceEE
Confidence 45555666677766665554332 33444444332 22221 111111110 0001111222111 3334444555544
Q ss_pred EeC--CCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcC
Q 008496 425 WNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP 501 (563)
Q Consensus 425 wd~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp 501 (563)
-.+ ..-.++.++.+|...+++++|.|... +|.+|+.|..|.+||+.-.+ ..+.+.+|...|..++.-+
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 333 34456778899999999999988653 79999999999999987544 3567889999999999988
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 008496 502 TGEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~ 523 (563)
--+.|.+++.||.|.+|++...
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hheeeeeccCCCeEEEEeccce
Confidence 8899999999999999998753
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=3.6e-08 Score=92.92 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=103.2
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 008496 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299 (563)
Q Consensus 220 ~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~ 299 (563)
.+..+|.+++||.+..+....++++..... ........... .....++.+..+........++....+.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~-------~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVP-------KRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecc-------cCcceeeeeeccceEEEEeecCCceeee
Confidence 345566667777666666655555543211 00000111110 1122344444444444444445556677
Q ss_pred EEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCe
Q 008496 300 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNM 379 (563)
Q Consensus 300 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 379 (563)
+|.........+-+|-+.++.++|+||+++++++..|..|++-.....-
T Consensus 136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------------------------------- 184 (390)
T KOG3914|consen 136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------------------------------- 184 (390)
T ss_pred eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-------------------------------
Confidence 7776533333456899999999999999999999999999875432110
Q ss_pred EEEEEcCCCccee-eecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 380 IYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 380 i~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
.+. -+-||+..|..++.-+ +..|+|+|.|+++++||+.+++.++++.
T Consensus 185 ----------~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 185 ----------VIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ----------chhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 011 2347999999998875 4558999999999999999999886653
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.6e-06 Score=80.06 Aligned_cols=217 Identities=18% Similarity=0.137 Sum_probs=135.5
Q ss_pred CCeEEEEEc-CCceeEeecc---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce
Q 008496 295 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (563)
Q Consensus 295 dg~i~vw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (563)
+|.|..||. +|+......- ....+ .. ..+++.++++++.++.+..||..+++.+-.+.......... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 578888887 5666555432 22222 11 22356788888999999999999998877666522211111 223344
Q ss_pred EEEEeCCCeEEEEEcCCCcceeee-cCCC---cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCC----
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---- 442 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~---- 442 (563)
++....++.++.++..+++.+... .... ..........++..++.+..++.|..+|.++++.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 455557779999998888877663 3221 11112222223778888888999999999999987666543322
Q ss_pred E------EEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 443 I------YTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 443 i------~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
+ ..-..... . .+..++.++. +.+ |+.+++.++... . ..+.. ...+++..|+.++.++.|
T Consensus 159 ~~~~~~~~~~~~~~~--------~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~-~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 159 ISSFSDINGSPVISD--------G--RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYS-LPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp EEEETTEEEEEECCT--------T--EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECE-CEECCCTEEEEEETTTEE
T ss_pred eeeecccccceEEEC--------C--EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccC-CceeeCCEEEEEeCCCEE
Confidence 1 11111111 1 3455666775 555 999999777544 2 22222 245778888888899999
Q ss_pred EEEecCCCeeEEE
Q 008496 516 HIWSLKEGKIVKT 528 (563)
Q Consensus 516 ~iw~~~~~~~~~~ 528 (563)
.+||+++|+.+.+
T Consensus 225 ~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 225 YALDLKTGKVVWQ 237 (238)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCCEEeE
Confidence 9999999998765
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=8e-07 Score=79.44 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=137.5
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEe--cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCc--ce
Q 008496 327 GDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EV 401 (563)
Q Consensus 327 ~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i 401 (563)
..+|+.|+.-|...+|.+.+.+..- +...+...+.-+. ......+..++.|.++.++++.....-. .-|.. .+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeeccccce
Confidence 3578899999999999988665432 2222221111000 0112345567788887777665432211 11322 37
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eee--ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
+++++++|++++++.++...|..|.+..... +.. ...-...-.+..|+... ..+|+++.||++.|||+
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---------~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---------LQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---------ceEEEEecCCcEEEEEe
Confidence 8999999999999999999999998765432 211 11222333555665543 37899999999999999
Q ss_pred CCCeEEEE-----ecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCeeEEEE---ec-----C-CCEEEEEEcC
Q 008496 479 ELGKLLYS-----LNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTY---TG-----N-GGIFEVCWNK 542 (563)
Q Consensus 479 ~~~~~~~~-----~~~h~~~i~~l~~spdg~--~lasgs~dg~v~iw~~~~~~~~~~~---~~-----~-~~i~~l~w~~ 542 (563)
+....... -..|.+.|..+.|+|-|. +|...-.-+.+++-|+++++-.+.. +. . ..|+.-+|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 86543221 234788999999998663 4555555678999999998644332 11 1 2377888888
Q ss_pred CCCEEEEEEC
Q 008496 543 EGDKIAACFA 552 (563)
Q Consensus 543 ~g~~la~~~~ 552 (563)
++..+-+...
T Consensus 313 ~n~s~~v~~e 322 (344)
T KOG4532|consen 313 ENESNDVKNE 322 (344)
T ss_pred CCcccccccc
Confidence 8876665543
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.6e-08 Score=98.46 Aligned_cols=272 Identities=15% Similarity=0.201 Sum_probs=174.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC--Cc------eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--GD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
|...|..++--.+.+-+++++.|.+|++|... |. ...+...|+.+|.++.|-.+.++++++ |+-+.+||.
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 34445555444566789999999999999853 21 334678899999999999888887765 789999998
Q ss_pred CCCceeEEeee---c--ccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeee-----cCCCcceeEEEECCCCCEE
Q 008496 345 KTEEWKQQFEF---H--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 345 ~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~~~~~l 413 (563)
--+....+... + .+.+.++.-. ....++.|+...+|.++|.+...-+..+ .+.++.+.+++.-+.|+.+
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 76665543321 1 1223333322 2334566688888998887765433222 3455678999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE-EeCCCCeEEEEecCCCC
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHRE 492 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~ 492 (563)
|.+-.+|+|-+.|.++++.+...+.-......++- |. ++ .|+....|.++.+ |....|...+..+....
T Consensus 892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-ps--------dq-~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PS--------DQ-ALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred hHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-ch--------hH-HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 99999999999999999988766543333333321 21 11 4677777888988 98877777766654333
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-------eeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 558 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~~~~-------~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v 558 (563)
|..-+ -.-|.-|+++.....+.+|--... ..++.-.-.+..+.++--|-..-..+|...|.+++
T Consensus 962 pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 32111 123556666666666667642110 01111112344567777776666666666666665
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.4e-05 Score=81.27 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=150.3
Q ss_pred CCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc------
Q 008496 286 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------ 357 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------ 357 (563)
+..++.++.+|.+..+|. +|+........ +++.+ ... .+..++.++.++.+..+|..+++.+-.+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777888999999996 46655444322 12211 011 24567778889999999999998765554321
Q ss_pred ---cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCC----c---ceeEEEECC--CCCEEEEEeCCCcEEEE
Q 008496 358 ---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIW 425 (563)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~----~---~i~~~~~~~--~~~~las~s~dg~i~iw 425 (563)
.|+. .+..++.+..++.++.++..+++.+-.+.... . ....+..+| .+..+..++.+|.+..+
T Consensus 197 ~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 197 GESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred CCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 1111 12235556678888888877665543322100 0 011111122 24556677788999999
Q ss_pred eCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CEEEEEEcCCCC
Q 008496 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGE 504 (563)
Q Consensus 426 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~spdg~ 504 (563)
|..+++.+-.... .....+.. .+ + .+..++.+|.+..+|..+|+.++....-.. ...+... .+.
T Consensus 272 d~~tG~~~W~~~~--~~~~~~~~--~~-------~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g 336 (394)
T PRK11138 272 DLRSGQIVWKREY--GSVNDFAV--DG-------G--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG 336 (394)
T ss_pred ECCCCCEEEeecC--CCccCcEE--EC-------C--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence 9988876543221 11111111 01 1 355677899999999999988875432111 1122222 245
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEEecC-CCEEE-EEEcCCCCEEEEEECCCeEEEEEe
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~~~~-~~i~~-l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+|..++.||.|.+.|..+|+++..+... ..+.. ... .+.+|.++..+|.+..++.
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 7778899999999999999998877543 22322 122 3568888889998877653
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=9.3e-08 Score=90.17 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=71.1
Q ss_pred eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
....||-..+..++|+||+++|+++..|..|||-....-..+..+ -+|..-|.+++..++- .|+|||.|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sGD 214 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSGD 214 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCCC
Confidence 445689999999999999999999999999999776554444444 3688888888876643 58999999
Q ss_pred CeEEEEeCCCCeEEEEe
Q 008496 471 STVKLWDVELGKLLYSL 487 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~ 487 (563)
++|++||+.+|+++.++
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999999988655
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=9.2e-06 Score=78.39 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCC-eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 275 KDVTTLDWNGEGTLLATGSYDG-QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg-~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
..|.-..+..+++-++.|..|| .+-|++..+.....+...-+.|.+++.+|+|++++.+.....+.+.|+.++.....-
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 4477778888888999999999 899999999888888888899999999999999999988889999999999876555
Q ss_pred eecccCeEEEecCCCceEEEE-eCCC----eEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 354 EFHSGPTLDVDWRNNVSFATS-STDN----MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~-~~d~----~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
....+-+.++.|.++..|++- -.+| .|+++++..++....-. ..+.=-+-+|.|++++|.--|
T Consensus 440 kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 440 KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 555567899999988776543 3333 57888888766543322 122223578999999876544
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=7.8e-08 Score=96.95 Aligned_cols=276 Identities=17% Similarity=0.291 Sum_probs=178.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCc-eeEeeccCCC--CEEEEEeCCCC--C-EEEEeeCCCcEEEEECCCC-
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKG--PIFSLKWNKKG--D-YLLTGSCDKTAIVWDVKTE- 347 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~--~V~~l~~~~~~--~-~l~s~s~D~~v~iwd~~~~- 347 (563)
..+..+..+|.|+-++.++.-|... -|++.. .....-.|-. .|-.+.|+|.. . ++++.+ .....+|++...
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCC
Confidence 5577888899999999988776443 343321 1111122332 35667787754 2 345444 445678887432
Q ss_pred --ceeEEeeecccCeEEEecCCC--ceEEEEeCCCeEEEEEcCCC-cceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496 348 --EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (563)
Q Consensus 348 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i 422 (563)
...-.+..|...+.++.|... ..+++|+.|..+..|+++.. .|+..+..-......++|+.....+...+...-|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 222234567778899999654 57899999999999999764 5666665555667789998766555566667789
Q ss_pred EEEeCCCC-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCEEEEEE
Q 008496 423 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAF 499 (563)
Q Consensus 423 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~ 499 (563)
++||.+.+ .+++.+++|...|+.+.|..-.. -.+.+++.||+|++||..+... -+.+. -..||....|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~ 253 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRY 253 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceecc-ccCcceeccc
Confidence 99999865 46788888988888888754321 1477899999999999875432 22222 3467888888
Q ss_pred cCCCCEEEEE--eCCCcEEEE---------ecCCC-eeEEEEecCC-CEEEEEEcCCCC----------EEEEEECCCeE
Q 008496 500 SPTGEYLASG--SLDKSMHIW---------SLKEG-KIVKTYTGNG-GIFEVCWNKEGD----------KIAACFANHTV 556 (563)
Q Consensus 500 spdg~~lasg--s~dg~v~iw---------~~~~~-~~~~~~~~~~-~i~~l~w~~~g~----------~la~~~~~~~v 556 (563)
-|-|.-..+- -.+..|.++ ++.++ +.+.+|.++. .|.++.|...+. .|++=+.|-.+
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 8865432221 112234444 33332 4678887764 355666655432 67777788888
Q ss_pred EEEEe
Q 008496 557 CVLDF 561 (563)
Q Consensus 557 ~v~~~ 561 (563)
++|-+
T Consensus 334 rlWpI 338 (1081)
T KOG0309|consen 334 RLWPI 338 (1081)
T ss_pred Eeeec
Confidence 88854
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=1.4e-07 Score=85.81 Aligned_cols=275 Identities=17% Similarity=0.294 Sum_probs=159.2
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCC-----CCCCCceEEEEEeeecccccCCCCeEEEEECCCC--CE
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-----AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TL 288 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~ 288 (563)
.-|+++.|...|.+|++|...|.+.++.-.....-.. .+......-.++.+ .....|..+.|-.++ ..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcce
Confidence 4588999999999999999889999997543220000 11100000000000 111347778887654 45
Q ss_pred EEEEeCCCeEEEEEcCCceeEee----------ccCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008496 289 LATGSYDGQARIWSTNGDLKCTL----------SKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~~~~~~~----------~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 352 (563)
++..+.|.+|++|....+-.... ....+|+++.+ .+... .++++ . -.+++
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa-~--p~rvy---------- 167 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAA-K--PCRVY---------- 167 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEe-c--cceec----------
Confidence 77778899999998643311111 01123333221 01110 11111 1 11222
Q ss_pred eeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc---ceeeecCCC-----cceeEEEECCCC-CEEEEEeCCCcEE
Q 008496 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAK 423 (563)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~-----~~i~~~~~~~~~-~~las~s~dg~i~ 423 (563)
-..|...+.++.+..+..+..+..|-.|.+|.+.... .+..++.|. .-|++..|+|.. .++.-.+..|.|+
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 0223333455666666667777777777777764321 233334443 347889999964 5667778899999
Q ss_pred EEeCCCCceee----------------eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEE
Q 008496 424 IWNMKQDKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYS 486 (563)
Q Consensus 424 iwd~~~~~~~~----------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~ 486 (563)
+-|++...... -+.+-...|..+.|+++|+ ++++-+. -+|+|||++.. .++.+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCcee
Confidence 99998432210 1122335678889999886 6666544 68999999854 45666
Q ss_pred ecCCC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 487 LNGHR------------EPV---YSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 487 ~~~h~------------~~i---~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
+.-|. ..| ..+.||-|.+.+.+||..+..-||-
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 54332 234 3588999988888888877666665
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=9.4e-09 Score=105.29 Aligned_cols=252 Identities=17% Similarity=0.349 Sum_probs=169.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCC-Cc
Q 008496 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKT-EE 348 (563)
Q Consensus 273 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~-~~ 348 (563)
+....||++|+.+.+.|+.|+..|.|+++++. |.......+|.++|+-+.=+.+|..+++.+.-. -..+|++.. +.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 45678999999999999999999999999976 555667889999999999999998877655433 467898753 33
Q ss_pred eeEEeeecccCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcceeeec-C---CCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 349 WKQQFEFHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~-~---h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
....|.. -..+.|.+...+. .+.......+||+.++.++.++- + .+..-+++.|+|+.++++ +||.
T Consensus 1180 ~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv-- 1250 (1516)
T KOG1832|consen 1180 PRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV-- 1250 (1516)
T ss_pred ccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce--
Confidence 3333322 1234444443332 22223456789999988877742 2 222347899999999876 4554
Q ss_pred EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+||.+....++.|...+.. ..-.|+|.|. -+++ - --|||+++-++++.+.... -..+.|+..|
T Consensus 1251 LWDvR~~~aIh~FD~ft~~-~~G~FHP~g~--------eVII-N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFTDY-GGGGFHPSGN--------EVII-N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred eeeeccHHHHhhhhhheec-ccccccCCCc--------eEEe-e-----chhhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence 7999887777666543311 1223455543 3333 2 2589999988776654322 2568888888
Q ss_pred CEEEEEe-----C-C-----------CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEE
Q 008496 504 EYLASGS-----L-D-----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 504 ~~lasgs-----~-d-----------g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~ 550 (563)
..+...= . | ...+-|+..+.+.+.++...-.++++|=+|...+|++-
T Consensus 1314 ~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1314 DVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 7654321 0 0 23456666667778888888889999999988888764
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2.3e-08 Score=64.14 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=37.0
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
++++.++.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=5.7e-07 Score=91.45 Aligned_cols=235 Identities=14% Similarity=0.204 Sum_probs=156.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEc-CCceeEeeccCCCCEEEEEeCCCC------------CEEEEeeCCCcEEEEE
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG------------DYLLTGSCDKTAIVWD 343 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~------------~~l~s~s~D~~v~iwd 343 (563)
-.+++|+|.| +||-|+.+ .|.+-|. .-+....+..|...|+.++|.|-. -.|+++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4578899987 56666654 5556564 456677888999999999998632 2356667779999999
Q ss_pred CCCCceeEEeeecccCeEEEecCC---C--ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEe
Q 008496 344 VKTEEWKQQFEFHSGPTLDVDWRN---N--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCS 417 (563)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s 417 (563)
...+..+..+..+..++.+++|.. + ..+++-+...++.+|+..++..+-.+........|+.++| |.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999988888888999999999842 2 3456667778999999888877666655555677788888 445554445
Q ss_pred CCCcEEEEeCCC-Cc---eeeee---cccCC----------------C-------EE--EEEEccCCCCCCCCCCcEEEE
Q 008496 418 DDVTAKIWNMKQ-DK---YVHDL---REHSK----------------E-------IY--TIRWSPTGSGTNNPNQQLILA 465 (563)
Q Consensus 418 ~dg~i~iwd~~~-~~---~~~~~---~~~~~----------------~-------i~--~~~~~p~~~~~~~~~~~~~l~ 465 (563)
..|.+.+-+.-. .. +.+.+ ..|.. . .+ .++|+|.-+ ..+++
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-------n~lfi 248 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-------NILFI 248 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-------ceEEE
Confidence 555555544321 10 11111 11111 0 00 122333221 12333
Q ss_pred EEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCC
Q 008496 466 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 466 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg--~~lasgs~dg~v~iw~~~~ 522 (563)
.....+.++|++-..++....-.++.+.=+.+-|++ ..|..+-.||.+.||-.+.
T Consensus 249 --~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 --TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred --EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 356789999999888888776666666667777776 5788899999999997654
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=5e-08 Score=89.98 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=104.3
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----ceeeeecccCCCEEEEEEc
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----KYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~ 449 (563)
+.+..+.+.++.++. .+.|. ..+.|.++.|...++++..|..+|.|..+|++.. .+.+.+ -|...|+++..-
T Consensus 231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~L 307 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQIL 307 (425)
T ss_pred cccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhh
Confidence 344444455554332 12222 4567889999998999999999999999999865 223333 477777777643
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~--l~~spdg~~lasgs~dg~v~iw~~~~~~ 524 (563)
... ++ .|.+.+++|+|++||.+.-++ +....||...-.- +-..+....+++++.|...+||.++.|.
T Consensus 308 q~s-------~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 308 QFS-------QQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred ccc-------cc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 311 22 567788999999999997666 8888888543222 2335667789999999999999999999
Q ss_pred eEEEEecC
Q 008496 525 IVKTYTGN 532 (563)
Q Consensus 525 ~~~~~~~~ 532 (563)
++.+.+..
T Consensus 380 Ll~tipf~ 387 (425)
T KOG2695|consen 380 LLCTIPFP 387 (425)
T ss_pred eeeccCCC
Confidence 99987653
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=8.3e-06 Score=73.10 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=144.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCc--eeEeeccCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeE
Q 008496 285 EGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 361 (563)
..-+|+.||..|...+|..... .......|...|+-++=. ...-.+..++.|.++++.++..+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3457999999999999987632 223334454444332211 1123467788999999998866544333222212245
Q ss_pred EEecCCCceEEE-EeCCCeEEEEEcCCCc--ceeeec-CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee--
Q 008496 362 DVDWRNNVSFAT-SSTDNMIYVCKIGENR--PIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-- 435 (563)
Q Consensus 362 ~~~~~~~~~~~~-~~~d~~i~~~~~~~~~--~~~~~~-~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-- 435 (563)
.+...++..+.+ .+....|+.|.++... ...+.. .....--+..|+.....+|+++.||++.|||++.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 566666666654 4555678888776542 233222 2233345788999999999999999999999986554322
Q ss_pred ---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec-------CCC-CCEEEEEEcCCCC
Q 008496 436 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHR-EPVYSLAFSPTGE 504 (563)
Q Consensus 436 ---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~-~~i~~l~~spdg~ 504 (563)
-..|.+.+..+.|+|.|.- . +|.-.-.-+.+.+.|+++++....+. .|. ..|+...|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~l------D-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLL------D-LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcc------e-EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 1247889999999986642 2 34444455789999999887554432 122 2377788888876
Q ss_pred EEEEEeCCCcEEEEecC
Q 008496 505 YLASGSLDKSMHIWSLK 521 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~ 521 (563)
-+.+.+.+. +.-|++.
T Consensus 316 s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 316 SNDVKNELQ-GAEYNIL 331 (344)
T ss_pred ccccccchh-hheeecc
Confidence 666655543 4455554
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=7.7e-08 Score=61.69 Aligned_cols=38 Identities=39% Similarity=0.910 Sum_probs=35.9
Q ss_pred cceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEe
Q 008496 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 389 ~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd 426 (563)
+++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=6e-07 Score=91.29 Aligned_cols=159 Identities=19% Similarity=0.326 Sum_probs=126.0
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCC--CC-CCCcEEEEEEeCCCeEEEE
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT--NN-PNQQLILASASFDSTVKLW 476 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~--~~-~~~~~~l~s~s~dg~i~iw 476 (563)
.-++++|+|.| +||-|+.. .|.+-|..+-+.+..+..|...|+.++|.|....- .. +..+++||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36689999866 66666654 68888999999999999999999999999865322 12 2356789999999999999
Q ss_pred eCCCCeEEEEecCCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEecCCCeeEEEEecCCCE-EEEEEcC-CCCEEEEE
Q 008496 477 DVELGKLLYSLNGHREPVYSLAFSP---TG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-FEVCWNK-EGDKIAAC 550 (563)
Q Consensus 477 d~~~~~~~~~~~~h~~~i~~l~~sp---dg-~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i-~~l~w~~-~g~~la~~ 550 (563)
|...+..+..+..|..+|..++|-| +. .+|++-....+|.+|+..+|+.+..+.....| .++.++| |.+++.+-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988888998999999998865 34 46666677789999999999998887765544 4588998 66788877
Q ss_pred ECCCeEEEEE
Q 008496 551 FANHTVCVLD 560 (563)
Q Consensus 551 ~~~~~v~v~~ 560 (563)
+..|.|.+.+
T Consensus 175 ~s~g~vl~~~ 184 (1062)
T KOG1912|consen 175 GSKGFVLSCK 184 (1062)
T ss_pred ccCceEEEEe
Confidence 7777766554
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=9e-07 Score=91.70 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=135.5
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEE
Q 008496 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 405 (563)
Q Consensus 326 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~ 405 (563)
++..++-|+....+..+|+++.+..+......+.+.-+. .++..+.++...|+|.+-|..+.+++.++..|++.|..++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 345678888888889999998887776665554443333 3455677788999999999999999999999999997655
Q ss_pred ECCCCCEEEEEeCCC---------cEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496 406 WDPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476 (563)
Q Consensus 406 ~~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 476 (563)
. .|++|+||+..+ -|+|||++..+.+.-+..+.++ .-++|.|.-. ..++.+|..|...+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV 293 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence 4 689999998644 4789999887766555544443 4456666543 257778888999998
Q ss_pred e---CCCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 477 D---VELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 477 d---~~~~~-~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
| +.+.. .++.+......|.++.+|++|..||.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 8 33321 12333334455999999999999999999999999973
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=1.5e-05 Score=72.55 Aligned_cols=192 Identities=21% Similarity=0.299 Sum_probs=107.4
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCC------CCEEEE
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLAT 291 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~s 291 (563)
=+.++||||+.+||.+...|+|+++|+..... ..+.........-...|-.|.|-.- ...|++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 35789999999999999999999999864321 0110000001112234555544321 124556
Q ss_pred EeCCCeEEEEEcC-----C-ceeEee--c-cCCCCEEEEEeCCCCCEEEEeeCCCc-----------EEEEECCCCceeE
Q 008496 292 GSYDGQARIWSTN-----G-DLKCTL--S-KHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQ 351 (563)
Q Consensus 292 g~~dg~i~vw~~~-----~-~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~s~D~~-----------v~iwd~~~~~~~~ 351 (563)
-.+.|.++=|-+. + ....++ . .+...|.++.|+|..+.|+.|+.... +..|.+-.+.
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~--- 191 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS--- 191 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC---
Confidence 6778877766531 1 122232 2 24778999999999888887765322 2233222111
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeE------EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMI------YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i------~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iw 425 (563)
+....+....+... .++.+...+...........|-.+..||||++||+.+.+|.|.+|
T Consensus 192 ---------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 192 ---------------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred ---------------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 01111111111111 112221111100011234568899999999999999999999999
Q ss_pred eCCCCceeeeecc
Q 008496 426 NMKQDKYVHDLRE 438 (563)
Q Consensus 426 d~~~~~~~~~~~~ 438 (563)
++-+-++......
T Consensus 257 ~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 257 EIPSLRLQRSWKQ 269 (282)
T ss_pred ecCcchhhcccch
Confidence 9877665554443
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9e-07 Score=84.64 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=155.1
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---CceeEEeeecccCeEEEecCC-CceEEEEeC-CCeEEEEEcCCC
Q 008496 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQFEFHSGPTLDVDWRN-NVSFATSST-DNMIYVCKIGEN 388 (563)
Q Consensus 314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-d~~i~~~~~~~~ 388 (563)
|...|+.+. ....+++++++.||.++.|-... -+.+..+..|.+.+..+.... ...+.+.+. |..++++++..-
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 666666654 33457899999999999997533 234445566666665555433 345566555 889999887653
Q ss_pred ccee--eecCCCcceeEEEECCCC--CEE-EEEeCCCcEEEEeCCCCce--eeeecccCCCEEEEEEccCCCCCCCCCCc
Q 008496 389 RPIK--TFAGHQGEVNCVKWDPTG--SLL-ASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (563)
Q Consensus 389 ~~~~--~~~~h~~~i~~~~~~~~~--~~l-as~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 461 (563)
..+. .+.--.+.+.++ .++.. .+| ++.-+++.+.|+|-..+.+ ...-.-|..+|..+.+.|.+.
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-------- 157 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-------- 157 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--------
Confidence 3221 111111222211 12211 133 3444588999999765543 223346899999999999875
Q ss_pred EEEEEEeCCCeEEEEeCCC------CeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeE
Q 008496 462 LILASASFDSTVKLWDVEL------GKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 526 (563)
Q Consensus 462 ~~l~s~s~dg~i~iwd~~~------~~~~~~~~---------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~ 526 (563)
.+.|....|.|.-|.... .+..+.++ .......++.|+|+|..+++-+.|..|+++..++|+++
T Consensus 158 -s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 -SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 466777789999998762 22222222 23445689999999999999999999999999999887
Q ss_pred EEEecC--------------------------------C--CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 527 KTYTGN--------------------------------G--GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 527 ~~~~~~--------------------------------~--~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.+... + .-...+|+..|+.|..+.-=| |.|+|+.
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 665311 1 124678999999999986543 7777763
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.8e-06 Score=87.14 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=122.3
Q ss_pred CceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEE
Q 008496 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (563)
Q Consensus 368 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 447 (563)
+..|+.+.-+|.+++.+..... .+...|... +.+|.+++|||+||++.|-.+.+.+..+.+. ...++.+++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 4457777788888888765442 222233332 5689999999999999999888777655443 456899999
Q ss_pred EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-C-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 448 WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-G-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
++|+-.. .+...+++|+.-| +.++.-.= | +.-..+..-.++|.+++|. |.+||-++.+| |+|||+.+++.
T Consensus 120 l~Pd~~~----~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 120 LHPDFSR----QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred eccchhh----hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 9998321 1123578898888 77764220 1 1111344557899999994 77999999998 99999999887
Q ss_pred EEEEecCC-------CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 526 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 526 ~~~~~~~~-------~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+...+... -...+.|.++. .|+.|-++ +|.|..+|
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 76654321 13579998764 67788665 78887776
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.59 E-value=4.2e-05 Score=71.83 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=132.4
Q ss_pred CCcEEEEECCCCceeEEeeecc--cCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEE
Q 008496 336 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 336 D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
+++|..||+++++.+-...... ..........+..+.+++.++.++.++..+++.+..+.. .+.+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 6889999999998777665422 222221232445566668999999999988887666554 22211111 1234556
Q ss_pred EEEeCCCcEEEEeCCCCceeeee-cccC---CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDL-REHS---KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 489 (563)
+.++.++.+..+|..+++.+..+ .... ...........+. .++.+..++.|..+|+++|+.+.....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 66778889999999999887663 2221 0011111111121 466677799999999999999988765
Q ss_pred CCCC----------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 490 HREP----------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 490 h~~~----------i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
...+ +..-....++ .+..++.++.+.-+|+.+++.+.... ...+.. ....++..|+++..++.+..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 4322 1222222344 67777777764444999999765433 333333 245778888888789999999
Q ss_pred Eee
Q 008496 560 DFR 562 (563)
Q Consensus 560 ~~~ 562 (563)
|++
T Consensus 228 d~~ 230 (238)
T PF13360_consen 228 DLK 230 (238)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=3.2e-07 Score=84.83 Aligned_cols=156 Identities=13% Similarity=0.267 Sum_probs=120.2
Q ss_pred EEECC--CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC----ceeEEe
Q 008496 280 LDWNG--EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQF 353 (563)
Q Consensus 280 l~~s~--~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~ 353 (563)
++|+- .|-. ++.+.+-.|-+-+..+.....|. .++.|+++.|...++.+..|...|.|...|++.+ .+..+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 36664 2334 45566777888888777766666 6788999999999999999999999999999876 455555
Q ss_pred eecccCeEEEecC--CCceEEEEeCCCeEEEEEcCCCcc---eeeecCCCccee--EEEECCCCCEEEEEeCCCcEEEEe
Q 008496 354 EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVN--CVKWDPTGSLLASCSDDVTAKIWN 426 (563)
Q Consensus 354 ~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~--~~~~~~~~~~las~s~dg~i~iwd 426 (563)
..|...+.++.-. .+..+++++.+|.|.+||.+-.+. +..+.||-+.-. -+-.++....++++++|...|||.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 6677776666542 456778889999999999987666 899999965432 234466778899999999999999
Q ss_pred CCCCceeeeec
Q 008496 427 MKQDKYVHDLR 437 (563)
Q Consensus 427 ~~~~~~~~~~~ 437 (563)
++.+....++.
T Consensus 375 l~~ghLl~tip 385 (425)
T KOG2695|consen 375 LDSGHLLCTIP 385 (425)
T ss_pred cccCceeeccC
Confidence 99888776654
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.2e-05 Score=82.76 Aligned_cols=180 Identities=19% Similarity=0.263 Sum_probs=122.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
++|++++ +++|+-|+.+|.+++.+.++.. .+...|... ...|.+++|||.||+|.|-.+-+.+...++.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df- 111 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF- 111 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence 4444443 5789999999999999998877 444445544 66899999999999999887655443222211
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-----CCEEEEEeCCCcEEEEeC---C
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNM---K 428 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-----~~~las~s~dg~i~iwd~---~ 428 (563)
..++.+++++|+ .+.+++|+.-| +.++.- .
T Consensus 112 -----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 112 -----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred -----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 235677888887 56788999988 666531 1
Q ss_pred CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC------EEEEEEcCC
Q 008496 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP------VYSLAFSPT 502 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~------i~~l~~spd 502 (563)
....+ .+..-.++|+++.|.-+ ++|=++.+| |++||+.+++.+..+...... -..+.|.++
T Consensus 150 nk~~v-~l~~~eG~I~~i~W~g~-----------lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 150 NKDSV-VLSEGEGPIHSIKWRGN-----------LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred Cccce-eeecCccceEEEEecCc-----------EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC
Confidence 12222 34556789999999643 677777666 999999988887766432222 245778776
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q 008496 503 GEYLASGSLDKSMHIWSLKEG 523 (563)
Q Consensus 503 g~~lasgs~dg~v~iw~~~~~ 523 (563)
.+.+ .|= ..+|+|..++.+
T Consensus 217 ~~LV-IGW-~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 217 DRLV-IGW-GDSVKICSIKKR 235 (846)
T ss_pred CeEE-Eec-CCeEEEEEEecc
Confidence 5544 443 346889888743
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=0.00044 Score=65.21 Aligned_cols=246 Identities=16% Similarity=0.148 Sum_probs=138.6
Q ss_pred eEEEEECCC-CCEEEEeeCCC-cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 218 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 218 V~~~~~sp~-~~~latgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
...++.+|. ...+|.+-.-| .+.+||..++......... .-+|+.+| -.||+||++|++.-.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyGH----------g~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYGH----------GVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEecC----------EEEcCCCCEEEEeccc
Confidence 346788884 56677776555 4778888776532111100 01222222 3699999999987443
Q ss_pred -----CeEEEEEcCCc--eeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCC
Q 008496 296 -----GQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (563)
Q Consensus 296 -----g~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (563)
|.|-|||.... ....+..|.-.-..+.+.|+|..|+.+.. -|.- ...++..+-.+
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~kLNl--------------- 133 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAKLNL--------------- 133 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCceecCh---------------
Confidence 89999998833 34467666666678889999988877642 1110 00111100000
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceee--e--cCCCcceeEEEECCCCCEEEEEeCCCc-------EEEEeCCCCceeeee-
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDL- 436 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~i~~~~~~~~~~~las~s~dg~-------i~iwd~~~~~~~~~~- 436 (563)
...+-.+...+..++..+.. + .-|...|.-++++++|..++.+-..|. +-+++. +.....+
T Consensus 134 -----~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~ 206 (305)
T PF07433_consen 134 -----DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLP 206 (305)
T ss_pred -----hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceecc
Confidence 00111122222222322222 2 225556777777777766655544332 222222 2211111
Q ss_pred ------cccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 008496 437 ------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 510 (563)
Q Consensus 437 ------~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs 510 (563)
..-.+.+-+|++++++. .+.+|+=.-+.+.+||..+++.+....-. .+..++-.+++ +++|.+
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC
Confidence 12345688899988764 46677778899999999999988765432 35677777777 666544
Q ss_pred CCCcE
Q 008496 511 LDKSM 515 (563)
Q Consensus 511 ~dg~v 515 (563)
.|.+
T Consensus 276 -~G~~ 279 (305)
T PF07433_consen 276 -QGQL 279 (305)
T ss_pred -CccE
Confidence 3443
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=7.1e-06 Score=73.22 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=97.8
Q ss_pred eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeecccCeEEEecCCCceEEEEeCCC------eEEE
Q 008496 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDN------MIYV 382 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~i~~ 382 (563)
.+..|+.+-.+-..+--++.++++..||.+.+.+.+.-. ...+.........+.+......++.+..=+ ..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 444565554444445557789999999999999876411 111111111011111111222333333222 2344
Q ss_pred EEcCCCcceeeecC---CCcceeEEEECCCC-CEEEEEeCCCcEEEEeCCCCce-eeeecccCCCEEEEEEccCCCCCCC
Q 008496 383 CKIGENRPIKTFAG---HQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNN 457 (563)
Q Consensus 383 ~~~~~~~~~~~~~~---h~~~i~~~~~~~~~-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~~~ 457 (563)
|+++. +.++.. ....|.+++-+|.. .++++|++||.+-+||++.... +..+.+|..+|.-+.|+|....
T Consensus 164 ~~~~p---~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~--- 237 (319)
T KOG4714|consen 164 NTLDP---IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE--- 237 (319)
T ss_pred ecccc---cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch---
Confidence 44433 333321 12348899999865 5667888999999999987644 4567789999999999996532
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC
Q 008496 458 PNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
-|++++.||.+--||..+
T Consensus 238 -----~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 -----HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----heeEecCCCcEEEEcCCC
Confidence 478999999999999764
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.4e-05 Score=73.16 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=133.5
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc
Q 008496 272 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 272 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~ 348 (563)
.+...|..++|||..+ ++..++.+..|+|.|....... .+..| .++++++|.-+. ++++.|...|.|.|||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3456799999999877 7889999999999998765443 44455 899999998765 678899999999999997543
Q ss_pred ee-EEe--eecccCeEEEecCCCc-------eEEEEeCCCeEEEEEcC--CCcceeee-cCCCcceeEEEECCCCCEE-E
Q 008496 349 WK-QQF--EFHSGPTLDVDWRNNV-------SFATSSTDNMIYVCKIG--ENRPIKTF-AGHQGEVNCVKWDPTGSLL-A 414 (563)
Q Consensus 349 ~~-~~~--~~~~~~~~~~~~~~~~-------~~~~~~~d~~i~~~~~~--~~~~~~~~-~~h~~~i~~~~~~~~~~~l-a 414 (563)
-. ..+ .....|+..+...... .++....+- ..|.+. ...+..++ .+..+.+.++++++..+.+ +
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 11 111 1122344444432211 122222221 122221 11111111 1223455566666644443 3
Q ss_pred EEeCCCc---EE---E-EeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE
Q 008496 415 SCSDDVT---AK---I-WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 486 (563)
Q Consensus 415 s~s~dg~---i~---i-wd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 486 (563)
|.-.+-. ++ . -|...+.++..-+ .+.+ ...-..+........++...++..+..-+.+.+||+.+.+.+.+
T Consensus 348 tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G-s~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 348 TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG-SKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQT 426 (463)
T ss_pred EecCCCCCccceeeeeeeccccCceeeeecccccC-CcccccccccceeccccccEEEEecCCcceeEEeccchhheeee
Confidence 3322210 11 0 1122232222111 1100 00000000000011122345677788888999999999999988
Q ss_pred ecCCCCCEEEEEEcC-C-CCEEEEEeCCCcEEEEecC
Q 008496 487 LNGHREPVYSLAFSP-T-GEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 487 ~~~h~~~i~~l~~sp-d-g~~lasgs~dg~v~iw~~~ 521 (563)
+.- ..+|..++... + +.||++-. |..++||..+
T Consensus 427 l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 427 LAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 863 47899887654 3 35777655 4568888654
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.4e-06 Score=83.59 Aligned_cols=107 Identities=26% Similarity=0.450 Sum_probs=81.9
Q ss_pred EEEECCCCCEEEEee----CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 220 ACAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 220 ~~~~sp~~~~latgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
-.+|||...+||.++ ..|.+.||- .+|.... ++ ...-.+++++|+|..-.|+.|-.-
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-------------~V-----t~P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-------------DV-----TYPVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-------------cc-----ccceehhhhccChHHHHHhhcccc
Confidence 457999999988876 356777773 2222110 00 011236789999999999999999
Q ss_pred CeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008496 296 GQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (563)
Q Consensus 296 g~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 345 (563)
|.+.+|..+.....+ ...|+.+|..+.||++|+.++++..-|.|.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999988765554 45699999999999999999999999999999654
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=3.5e-06 Score=75.11 Aligned_cols=164 Identities=15% Similarity=0.207 Sum_probs=95.1
Q ss_pred EecCCCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
++..|+.+-.+-+.+--++.+++|..||.+.+.+...-.. +.+ .....+..--+.+.-..++.+
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~-------------~~~---~i~~~~~~~as~~~~~~~~~i 147 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA-------------LMS---RIPSIHSGSASRKICRHGNSI 147 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh-------------hhh---hcccccccccccceeecccEE
Confidence 3334444333334455677899999999999988643100 000 000000001111122234444
Q ss_pred EEEeC-----CCeEEEEEcCCceeE-eeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEE
Q 008496 290 ATGSY-----DGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (563)
Q Consensus 290 ~sg~~-----dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 362 (563)
.++.. -+..++|+.+..... .-..-...|++++-+|..+ .+++|+.||.+-+||.+...
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------- 213 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------- 213 (319)
T ss_pred ecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc--------------
Confidence 44321 123445554322110 0011123488898888665 45677888999999987541
Q ss_pred EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008496 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 363 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~las~s~dg~i~iwd~~~ 429 (563)
.|+..+..|+.+|+.+-|+|. +..|++|++||.+..||..+
T Consensus 214 --------------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 --------------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --------------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 244567789999999999995 56789999999999999764
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00032 Score=75.82 Aligned_cols=234 Identities=18% Similarity=0.253 Sum_probs=129.5
Q ss_pred CceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
+.|.++.|.-++.-++.+..+|.|.+-|..+... .+ . ......|.+++||||+..++..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~------------ei---v---g~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL------------EI---V---GNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce------------ee---e---eeccCceEEEeecCCCcEEEEEeCC
Confidence 5788999999998888888899998887654321 00 0 1124679999999999999999998
Q ss_pred CeEEEEEcCCceeEeecc-----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-CceeEEeeecccCeEEEecCCCc
Q 008496 296 GQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV 369 (563)
Q Consensus 296 g~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 369 (563)
+++.+-+.+-.+...-.- -.+....+-|-...+.|= |+. |....-+... .+...... ....-..+.|+.+.
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIE-QDDHKTSISWRGDG 207 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeee-cch-hhhcccccccccccccchh-hccCCceEEEccCC
Confidence 888876543222111100 112223344433322221 111 1111111000 00000000 11122458899887
Q ss_pred e-EEEE----eCC-CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeCC---CCceeeeec
Q 008496 370 S-FATS----STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMK---QDKYVHDLR 437 (563)
Q Consensus 370 ~-~~~~----~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~~---~~~~~~~~~ 437 (563)
. |+++ ..+ ..|++|+.. +..-.+-..-.+.=.+++|-|.|.++|+-. .|+.|.++.-+ .+..+..+.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP 286 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence 4 4442 344 789999876 211111111122335799999999998753 35578888633 222222233
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEE---EeCCCeEEEEeCCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILAS---ASFDSTVKLWDVEL 480 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~ 480 (563)
....++..++|+.++. +||. ......|++|-+.+
T Consensus 287 ~de~~ve~L~Wns~sd---------iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSD---------ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccchheeeecCCCC---------ceeeeecccccceEEEEEecC
Confidence 3344589999988765 4554 34444599998765
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.8e-07 Score=96.14 Aligned_cols=217 Identities=18% Similarity=0.268 Sum_probs=146.7
Q ss_pred EeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCce-EEE-EeCCC-eEEEEEc
Q 008496 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FAT-SSTDN-MIYVCKI 385 (563)
Q Consensus 309 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~d~-~i~~~~~ 385 (563)
.++..|+..-++++|+-+.++|+.|+..|.|+++++.+|.-...+.+|..++..+....+.. ..+ ++... -..+|+.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 35677888999999999999999999999999999999998889999999888777654332 222 22222 3456776
Q ss_pred CC-CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-cc---cCCCEEEEEEccCCCCCCCCCC
Q 008496 386 GE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-RE---HSKEIYTIRWSPTGSGTNNPNQ 460 (563)
Q Consensus 386 ~~-~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-~~---~~~~i~~~~~~p~~~~~~~~~~ 460 (563)
+. ..+..+|. .-.++.|+.....-+.|..-..+.|||+.++..+.++ .. ..-.-....|+|...
T Consensus 1175 ~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~------- 1243 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT------- 1243 (1516)
T ss_pred ccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-------
Confidence 54 33444554 3457888866554455555567889999988766542 21 111224556666543
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE
Q 008496 461 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540 (563)
Q Consensus 461 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w 540 (563)
++| .|| .+||++..+.++.+...... ..-.|+|.|.-++.-+. |||+++.+++++...-. -+.+.|
T Consensus 1244 -LIl----ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld-qc~VtF 1309 (1516)
T KOG1832|consen 1244 -LIL----NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD-QCAVTF 1309 (1516)
T ss_pred -eEe----eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc-ceEEEe
Confidence 332 455 46999988877776544322 23469999998887553 89999988877654211 256778
Q ss_pred cCCCCEEEEE
Q 008496 541 NKEGDKIAAC 550 (563)
Q Consensus 541 ~~~g~~la~~ 550 (563)
+..|+.+.+.
T Consensus 1310 NstG~VmYa~ 1319 (1516)
T KOG1832|consen 1310 NSTGDVMYAM 1319 (1516)
T ss_pred ccCccchhhh
Confidence 8888765544
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=0.00024 Score=73.13 Aligned_cols=172 Identities=11% Similarity=0.145 Sum_probs=102.3
Q ss_pred CeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCC
Q 008496 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 457 (563)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 457 (563)
+.+.+.|..+.+.+.++.- .+....++++|+|+++++.+.+.. .+..+..+...... ..+.|.+.+.....
T Consensus 215 ~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE-------~G~tl~em~a~e~d-~~vvfni~~iea~v 285 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSE-------EGVTLAEMMAAERD-WVVVFNIARIEEAV 285 (635)
T ss_pred EEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcc-------cCcceeeeccccCc-eEEEEchHHHHHhh
Confidence 3444455544333333221 113356788999999877763221 11122222111111 33444433211111
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC----C-eEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCe-------
Q 008496 458 PNQQLILASASFDSTVKLWDVEL----G-KLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------- 524 (563)
Q Consensus 458 ~~~~~~l~s~s~dg~i~iwd~~~----~-~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~~~------- 524 (563)
++.....+ .++.|.+.|.++ + +.+..+.- ......+.+||||+++++++ .+.+|.|.|+.+.+
T Consensus 286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE---CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 22223333 357899999987 3 44444432 33458899999999886654 58999999998754
Q ss_pred -----eEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 525 -----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 525 -----~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
++....-.-+....+|+++|+...+.+.|..|+.||+.
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 34444444556789999999988888999999999974
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1.4e-05 Score=83.25 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=129.4
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 448 (563)
..++.++-...+..+|+...+..+...-..+.|.-++. +++++.+|...|+|.+-|.++.+.++++.+|++.|..+..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44555666666777777776655554433434555554 6789999999999999999999999999999999887765
Q ss_pred ccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 008496 449 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW 518 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spd-g~~lasgs~dg~v~iw 518 (563)
+-+ +|++++. |..|++||++.-+.+.-+.-+.+| .=+.|.|. ...+|++|..|...+-
T Consensus 226 ~GN-----------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 226 QGN-----------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cCC-----------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 322 5666654 667899999987776655555554 44678886 4678888999999998
Q ss_pred ecCCCe----eEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 519 SLKEGK----IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 519 ~~~~~~----~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|..+.. -+..... ...+..+++++.|+.||.|-..|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 843211 1222222 33489999999999999999999999883
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=8.8e-05 Score=75.52 Aligned_cols=147 Identities=16% Similarity=0.262 Sum_probs=101.6
Q ss_pred CCCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEe
Q 008496 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (563)
Q Consensus 214 h~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~ 293 (563)
|...|.--+++..+++++.|+.-|.+.+|+-..+..... +. ......+..+..|++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------~~--~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------KN--EGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--------------cc--cCccceEEEEEecchhHhhhhhc
Confidence 334555566778899999999999999998655432110 00 01234466678899999999999
Q ss_pred CCCeEEEEEcCCc----eeEee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----eeEEeeecccCeEE
Q 008496 294 YDGQARIWSTNGD----LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD 362 (563)
Q Consensus 294 ~dg~i~vw~~~~~----~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~ 362 (563)
..|.|.++..+.. +...- ..|+..|++++|++++..+++|...|+|.+-.+.+.. ..+.+.....+++.
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 9999999976532 22211 2378899999999999999999999999988776621 12233334556777
Q ss_pred EecCCCceEEEEeC
Q 008496 363 VDWRNNVSFATSST 376 (563)
Q Consensus 363 ~~~~~~~~~~~~~~ 376 (563)
++......+++...
T Consensus 176 lD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 176 LDYLQSYLLVSTLT 189 (726)
T ss_pred eecccceehHhhhh
Confidence 77766655554443
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.5e-05 Score=71.33 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=139.0
Q ss_pred eeccCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcC
Q 008496 310 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIG 386 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~ 386 (563)
.+..|...|..++|+|..+ .+..++.++.|+|.|+++..++..+..+ .++.+.+|.- ...+.++-.+|.|+++|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5677888999999999887 5778999999999999999988888777 6788888853 3445677789999999997
Q ss_pred CCc-ceeeecC--CCcceeEE------EECCCCCEEEEEeCCCcEEEEeCCC--Cceeeeec-ccCCCEEEEEEccCCCC
Q 008496 387 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 387 ~~~-~~~~~~~--h~~~i~~~------~~~~~~~~las~s~dg~i~iwd~~~--~~~~~~~~-~~~~~i~~~~~~p~~~~ 454 (563)
... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|...- +.....+. +..+.+.+.++.+...
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn- 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN- 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc-
Confidence 643 3333322 11223222 234455666555544 34555421 11111111 1123333333333211
Q ss_pred CCCCCCcEEEEEEeCCCe---EE---E-EeCCCCeEEEEec-CC-CC---C---EEEEEEcCCCCEEE-EEeCCCcEEEE
Q 008496 455 TNNPNQQLILASASFDST---VK---L-WDVELGKLLYSLN-GH-RE---P---VYSLAFSPTGEYLA-SGSLDKSMHIW 518 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~---i~---i-wd~~~~~~~~~~~-~h-~~---~---i~~l~~spdg~~la-sgs~dg~v~iw 518 (563)
.+|+|.-.+.+ ++ . -|-.+|..+...+ ++ .. + -..+.-.++.++|+ .|+..+.+.+|
T Consensus 344 -------h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 344 -------HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred -------eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 12222211100 00 0 0112232222111 11 00 0 01122245656665 45666899999
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcC-CC-CEEEEEECCCeEEEEEe
Q 008496 519 SLKEGKIVKTYTGNGGIFEVCWNK-EG-DKIAACFANHTVCVLDF 561 (563)
Q Consensus 519 ~~~~~~~~~~~~~~~~i~~l~w~~-~g-~~la~~~~~~~v~v~~~ 561 (563)
|+.++++++++.-+..|.+++-.. .| .+||+- .|..+.||.+
T Consensus 417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred ccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 999999999999989999988554 44 455555 5557888864
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00023 Score=74.14 Aligned_cols=212 Identities=11% Similarity=0.095 Sum_probs=133.7
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCC-EEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCceeEEee
Q 008496 281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 281 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~ 354 (563)
+|++.+..++.|+.+|.|.+.+..-+....+..+... |..+....+.++|++.+.|+ .++|||+..-+--.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~--- 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN--- 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC---
Confidence 4788999999999999999988766666777777766 55444333446788877765 48999986432000
Q ss_pred ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCC--CCce
Q 008496 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--QDKY 432 (563)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~--~~~~ 432 (563)
.| .++ +.++++... +.....++.+++.+.+-+.+|.|-.+|.|.++.-+ ..+-
T Consensus 107 ---sP-~c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 107 ---SP-QCL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---Cc-cee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 00 000 001111111 11124567889999998999999999999988532 1111
Q ss_pred --eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEE
Q 008496 433 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG 509 (563)
Q Consensus 433 --~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasg 509 (563)
..-......+|+.+.+..++.. .+. ...-..|.+|.+....+ +..+..|..+.+|.+|++...-++.|
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s--------~lF-v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKS--------VLF-VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCce--------eEE-EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 1111223568999999877652 122 22345799999884332 44577788899999999866534444
Q ss_pred eCCCcEEEEecCCCeeEEEEe
Q 008496 510 SLDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 510 s~dg~v~iw~~~~~~~~~~~~ 530 (563)
+.. .|.+|+....++-.+|.
T Consensus 233 ~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCc-eEEEEcCCCcceeeeec
Confidence 433 49999987655444444
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.29 E-value=0.00041 Score=70.52 Aligned_cols=260 Identities=9% Similarity=0.034 Sum_probs=143.9
Q ss_pred CCEEEEEeCCCeEEEEEcC-CceeEeeccCC--CCEE-----EEEeCC--CCCEEEEeeCCCcEEEEECCCCceeEEeee
Q 008496 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK--GPIF-----SLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~--~~V~-----~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
+..+++++.+|.+..+|.. |+......-.. .... .+.-.| .+..++.++.++.+..+|..+++..-+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4456666677777777753 55443322111 0000 000011 356778888899999999999886655443
Q ss_pred cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce-----eEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008496 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~~~~~~~~~~las~s~dg~i~iwd~~~~ 430 (563)
... +...-...+..++....++.++.+|..+++.+-.+......+ .+... .+..++.++.+|.+..+|..++
T Consensus 149 ~~~-~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 149 AGE-ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CCc-eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCC
Confidence 221 111000113345556778889988988877665544221100 01111 1234666778888988888887
Q ss_pred ceeeeecccCC----C---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCC
Q 008496 431 KYVHDLREHSK----E---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 503 (563)
Q Consensus 431 ~~~~~~~~~~~----~---i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg 503 (563)
+.+........ . ...+.-+|.- .++ .+..++.+|.+..+|..+|+.++...-. ....+. .++
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~ 294 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDG 294 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEE-----ECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EEC
Confidence 76543321100 0 0000011100 011 3455678899999999999988765421 111222 245
Q ss_pred CEEEEEeCCCcEEEEecCCCeeEEEEec-CCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 504 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
..|..++.+|.|..+|..+|+.+..... ... ..+... .+.+|.++..+|.+.++|.
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 6777788899999999999987765432 111 111111 2556777778888877764
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.25 E-value=0.0025 Score=60.24 Aligned_cols=245 Identities=13% Similarity=0.125 Sum_probs=126.1
Q ss_pred EEEECC-CCCEEEEEeCCC-eEEEEEcC-CceeEeeccCCCCEE--EEEeCCCCCEEEEeeC-----CCcEEEEECC-CC
Q 008496 279 TLDWNG-EGTLLATGSYDG-QARIWSTN-GDLKCTLSKHKGPIF--SLKWNKKGDYLLTGSC-----DKTAIVWDVK-TE 347 (563)
Q Consensus 279 ~l~~s~-~g~~l~sg~~dg-~i~vw~~~-~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~s~-----D~~v~iwd~~-~~ 347 (563)
.++.+| .+..++.+-.-| .+.+||.. +.....+....+--+ .-.|+++|++|++.-. .|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 455666 455566665555 34566654 333333322222111 2468999999998654 4789999998 45
Q ss_pred ceeEEeeecccCeEEEecCCCc-eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--CEEEEEeCCCcEEE
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKI 424 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~las~s~dg~i~i 424 (563)
..+..|..+.-...++.+.++. .++.+- .|. .-+|+. ..|=..+.+-.+..
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI-------------------------~Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVAN-GGI-------------------------ETHPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEc-CCC-------------------------ccCcccCceecChhhcCCceEE
Confidence 5555665555444555554443 222221 110 001110 00111112222333
Q ss_pred EeCCCCceeee--e--cccCCCEEEEEEccCCCCCC-------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q 008496 425 WNMKQDKYVHD--L--REHSKEIYTIRWSPTGSGTN-------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 493 (563)
Q Consensus 425 wd~~~~~~~~~--~--~~~~~~i~~~~~~p~~~~~~-------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 493 (563)
-|..++..+.. + ..|.-.|..+++.++|.... ......+++.-..++.++........ ......-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l~~Y 218 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRLNGY 218 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH----HHhhCCc
Confidence 33444443332 2 22555677777776653100 00111234443333334433332111 1122345
Q ss_pred EEEEEEcCCCCEEEE-EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeE
Q 008496 494 VYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 494 i~~l~~spdg~~las-gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v 556 (563)
|-+|+++++|.++++ +-.-+.+.+||..+|+++....- ..++.++-.+++ ++++. ..|.+
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ss-G~G~~ 279 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSS-GQGQL 279 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeC-CCccE
Confidence 889999999988755 44678999999999998876543 236777777777 44444 34443
No 325
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.25 E-value=0.0026 Score=60.04 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=127.8
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEEC-CCCCEEEEEeCCCe
Q 008496 220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-GEGTLLATGSYDGQ 297 (563)
Q Consensus 220 ~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~g~~l~sg~~dg~ 297 (563)
+.+|.+ ++.++++--..+.|..|+..++... ... ......+++. ++|.+ +.+...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~---------~~~~~G~~~~~~~g~l-~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID---------LPGPNGMAFDRPDGRL-YVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE---------SSSEEEEEEECTTSEE-EEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe---------cCCCceEEEEccCCEE-EEEEcCc-
Confidence 578998 6777777777889999997654310 000 1115566676 56554 4455544
Q ss_pred EEEEEcCCceeEeecc------CCCCEEEEEeCCCCCEEEEeeCC--------CcEEEEECCCCceeEEeeecccCeEEE
Q 008496 298 ARIWSTNGDLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCD--------KTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 298 i~vw~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
+.++|........+.. .......+++.|+|+..++.... +.|..++.. ++...... .......+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi 139 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGI 139 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccccccce
Confidence 4555866443322211 23456889999999976765543 456777766 44333322 23334556
Q ss_pred ecCCCc--eEEEEeCCCeEEEEEcCCCcc-------eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Q 008496 364 DWRNNV--SFATSSTDNMIYVCKIGENRP-------IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (563)
Q Consensus 364 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~-------~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~ 434 (563)
.|..+. .+++-+..+.|+.+++..... +..+....+....++++.+|++.++....+.|.+++.. ++.+.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 665443 456778888999999864321 22223333457889999999999888889999999987 77777
Q ss_pred eecccCCCEEEEEEc
Q 008496 435 DLREHSKEIYTIRWS 449 (563)
Q Consensus 435 ~~~~~~~~i~~~~~~ 449 (563)
.+......+++++|.
T Consensus 219 ~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 219 EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSEEEEEEE
T ss_pred EEcCCCCCEEEEEEE
Confidence 776665688999994
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.0058 Score=63.81 Aligned_cols=249 Identities=13% Similarity=0.184 Sum_probs=138.2
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCC--CEEEEEeCC--CCCEEEEee---------CCCcEEEEECCCCceeEE
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~v~iwd~~~~~~~~~ 352 (563)
..++.++.+|.|+.+|.. |+.+..+..... .-..+.-+| .+..++.++ .++.+...|..+++.+-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 577788889999999974 665544432211 000111111 123444443 367889999999987666
Q ss_pred eeecccCe-----------------------EEEecCCCceEEEEeCCC------------------eEEEEEcCCCcce
Q 008496 353 FEFHSGPT-----------------------LDVDWRNNVSFATSSTDN------------------MIYVCKIGENRPI 391 (563)
Q Consensus 353 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~d~------------------~i~~~~~~~~~~~ 391 (563)
+....... ..++. ....+..++.++ .++-.+..+++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 55421110 00111 122333343333 6777788777766
Q ss_pred eeecC--CCc---ce-eEEEE----CCCCC---EEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCC
Q 008496 392 KTFAG--HQG---EV-NCVKW----DPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 458 (563)
Q Consensus 392 ~~~~~--h~~---~i-~~~~~----~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 458 (563)
-.+.. |.. .. ....+ .-++. .++.++.+|.+...|.++++.+-...... ..+..+|
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-------- 338 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-------- 338 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--------
Confidence 55431 110 00 00011 11333 57788899999999999998775432110 0111112
Q ss_pred CCcEEEEE----------------EeCCCeEEEEeCCCCeEEEEecCCC--------CCEEEEEEcCCCCEEEEEeCCCc
Q 008496 459 NQQLILAS----------------ASFDSTVKLWDVELGKLLYSLNGHR--------EPVYSLAFSPTGEYLASGSLDKS 514 (563)
Q Consensus 459 ~~~~~l~s----------------~s~dg~i~iwd~~~~~~~~~~~~h~--------~~i~~l~~spdg~~lasgs~dg~ 514 (563)
+..++.+ ...+|.|.-.|+.+|+.+++..... .+...-...-.+..|+.|+.||.
T Consensus 339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~ 417 (488)
T cd00216 339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY 417 (488)
T ss_pred -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence 1111111 2246789999999999988765321 11111111124578888999999
Q ss_pred EEEEecCCCeeEEEEecCCCEEE--EEEcCCCCEEE
Q 008496 515 MHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDKIA 548 (563)
Q Consensus 515 v~iw~~~~~~~~~~~~~~~~i~~--l~w~~~g~~la 548 (563)
|+.+|..+|+++..++..+.+.. +.+..+|+..+
T Consensus 418 l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred EEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEE
Confidence 99999999999988876555532 44566675333
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.18 E-value=0.0026 Score=63.54 Aligned_cols=257 Identities=15% Similarity=0.220 Sum_probs=131.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccC------------------CCCEEEEEeCCCCCEEEEeeCC
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCD 336 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D 336 (563)
..+....|||+|+.++... ++.|.+++..+.....+... -+.-.++-|||+|++|+....|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4577889999999998876 57899998654433322211 0112467899999999877655
Q ss_pred -CcEEEEEC---CCCceeEEeeecccCeEEEecCCCceEEEEeC--CCeEEEEEcCCCccee--ee---cCCCcceeEEE
Q 008496 337 -KTAIVWDV---KTEEWKQQFEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIK--TF---AGHQGEVNCVK 405 (563)
Q Consensus 337 -~~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~--~~---~~h~~~i~~~~ 405 (563)
..|..+.+ ..... . -..+..+.+.. .+.. .-.++++++.+++... .. ..-...+..+.
T Consensus 122 ~~~v~~~~~~~~~~~~~--~----yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~ 190 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDS--Q----YPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVG 190 (353)
T ss_dssp -TTS-EEEEEEESSSTE--S----S-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEE
T ss_pred CcCCceEEeeccCCccc--c----CCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccce
Confidence 33443332 11100 0 00011111100 0000 1135667776655321 11 22345688999
Q ss_pred ECCCCC-EEE-EEeCCC---cEEEEeCCCCceeeeeccc-CCCE---EEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496 406 WDPTGS-LLA-SCSDDV---TAKIWNMKQDKYVHDLREH-SKEI---YTIRWS-PTGSGTNNPNQQLILASASFDSTVKL 475 (563)
Q Consensus 406 ~~~~~~-~la-s~s~dg---~i~iwd~~~~~~~~~~~~~-~~~i---~~~~~~-p~~~~~~~~~~~~~l~s~s~dg~i~i 475 (563)
|.++++ +++ ....+. .+.++|..++.....+... ...| ....|. +++ ..+|.....||.-+|
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~--------~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG--------NEFLWISERDGYRHL 262 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS--------SEEEEEEETTSSEEE
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC--------CEEEEEEEcCCCcEE
Confidence 999998 333 333333 3456677665443222211 1111 123332 333 234444557876555
Q ss_pred E--eCCCCeEEEEecCCCCCEEE-EEEcCCCCEE-EEEeCC----CcEEEEecC-CCeeEEEEecCCCE-EEEEEcCCCC
Q 008496 476 W--DVELGKLLYSLNGHREPVYS-LAFSPTGEYL-ASGSLD----KSMHIWSLK-EGKIVKTYTGNGGI-FEVCWNKEGD 545 (563)
Q Consensus 476 w--d~~~~~~~~~~~~h~~~i~~-l~~spdg~~l-asgs~d----g~v~iw~~~-~~~~~~~~~~~~~i-~~l~w~~~g~ 545 (563)
+ +...+. ...++...-.|.. +.|+++++.| .+|..+ ..|..-++. .+.+ +.++...+. +.++|||+|+
T Consensus 263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp EEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSS
T ss_pred EEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCC
Confidence 4 555444 4456655566755 6788987655 455543 245555556 4443 444433322 6999999999
Q ss_pred EEEEEECC
Q 008496 546 KIAACFAN 553 (563)
Q Consensus 546 ~la~~~~~ 553 (563)
+++..+++
T Consensus 341 y~v~~~s~ 348 (353)
T PF00930_consen 341 YYVDTYSG 348 (353)
T ss_dssp EEEEEEES
T ss_pred EEEEEEcC
Confidence 88866554
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0012 Score=68.79 Aligned_cols=271 Identities=11% Similarity=0.085 Sum_probs=145.6
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCC------CEE--EEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
..+..++.++.+...|.. |+.+..+..... .+. .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 455666777888877753 444433322111 111 01111 22678888899999999999998776554332
Q ss_pred cC--eEEE----ecCCCceEEEE--------eCCCeEEEEEcCCCcceeeecCCCc--------------------ce-e
Q 008496 358 GP--TLDV----DWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N 402 (563)
Q Consensus 358 ~~--~~~~----~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~i-~ 402 (563)
.. ...+ ...+...++.+ ..++.++.+|..+++.+-.+..... .+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 10 0000 01122222222 2356788888877766544432110 11 1
Q ss_pred EEEECCCCCEEEEEeCCC------------------cEEEEeCCCCceeeeecccCCCEE--EEEEccCCCC--CCCCCC
Q 008496 403 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSG--TNNPNQ 460 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~p~~~~--~~~~~~ 460 (563)
..++++.+.+++.++.++ .+.-.|.++++.+-.++.-..... .....|.-.. ......
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 344555566777776555 688888888887755432111111 0000010000 000011
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEE-----------------EeCCCcEEEEecCCC
Q 008496 461 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG 523 (563)
Q Consensus 461 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~las-----------------gs~dg~v~iw~~~~~ 523 (563)
..+++.++.+|.+...|.++|+.++..... ...++.+| +..++. ...+|.|.-.|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 135777889999999999999998876421 11234455 222221 124678889999999
Q ss_pred eeEEEEecC---------CCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 524 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 524 ~~~~~~~~~---------~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
+.+...... .....-.--..|..|.++..+|.+..+|.+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 988776543 111100111245677888788888877753
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00043 Score=69.96 Aligned_cols=206 Identities=19% Similarity=0.238 Sum_probs=115.7
Q ss_pred eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEee--CC--CcEEEEECCCCceeEEeeecccCeEEEecCCCceEE
Q 008496 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (563)
.+.+=|.+|.....+..-...+..-+|+|++..++-.+ .. ..+.++|+.++....
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------------------- 232 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--------------------- 232 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---------------------
Confidence 33333444444445555556677778888887654331 11 235555555443211
Q ss_pred EEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEE-eCCCcEEEE--eCCCCceeeeecccCCCEEEEEEc
Q 008496 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 373 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~-s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
+..+.++. ...+|+|||+.|+-+ ..||...|| |+.++... .+..-.+.-..-.|+
T Consensus 233 ------------------i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s 290 (425)
T COG0823 233 ------------------ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS 290 (425)
T ss_pred ------------------eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCC
Confidence 12233332 246799999887654 457765554 66555532 233333333345666
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEecCCCe
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGK 524 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg~--v~iw~~~~~~ 524 (563)
|+|+ .++.+.+..|.-.|| |.+.+.. ..++.....-..-.|||||++|+..+. +|. |.+.++.++.
T Consensus 291 pdG~--------~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 291 PDGS--------KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCC--------EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 7665 466666677765554 5554433 333322222236789999999987764 344 6777776665
Q ss_pred eEEEEecCCCEEEEEEcCCCCEEEEEECCC
Q 008496 525 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 554 (563)
Q Consensus 525 ~~~~~~~~~~i~~l~w~~~g~~la~~~~~~ 554 (563)
-++.+.........+|.++|+.+......+
T Consensus 362 ~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 362 KIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 455555544455678999998777664443
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=9.5e-05 Score=74.21 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=83.6
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 517 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i 517 (563)
.....+.+.+++|+.. .|+.|..||+|.+||...+..... ...-..+.++|+|+|.++++|+..|.+.+
T Consensus 257 pL~s~v~~ca~sp~E~---------kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCARSPSED---------KLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEecCcccc---------eEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence 3566788888888754 688899999999999876644332 23455788999999999999999999999
Q ss_pred EecCCCeeEEE-----------------EecCCCEEEEEEcCCC-------------CEEEEEECCCeEEEEEee
Q 008496 518 WSLKEGKIVKT-----------------YTGNGGIFEVCWNKEG-------------DKIAACFANHTVCVLDFR 562 (563)
Q Consensus 518 w~~~~~~~~~~-----------------~~~~~~i~~l~w~~~g-------------~~la~~~~~~~v~v~~~~ 562 (563)
||+.-.-+... +.....+..+.|.+.. +.|+..+..|-+.|+-|+
T Consensus 326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~ 400 (545)
T PF11768_consen 326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFK 400 (545)
T ss_pred EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEe
Confidence 99864432111 1122345678998432 477888899988887764
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.001 Score=69.55 Aligned_cols=187 Identities=12% Similarity=0.196 Sum_probs=116.8
Q ss_pred ecCCCCceEEEEECCCC-CEEEEeeCCC-----cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC
Q 008496 211 LEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (563)
Q Consensus 211 l~~h~~~V~~~~~sp~~-~~latgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 284 (563)
+..+...+-..-|.-++ .+|++-+.|. .++||++.....+.+ |......+......+....++++++.+.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc
Confidence 34455553333455554 6888877654 599999875432111 3333222322222223467899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC-----CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-eeEEeeeccc
Q 008496 285 EGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSG 358 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~ 358 (563)
+-+.+|+|-.||.|..+.-+ |........-+.||+++.+..++..++-+..-..|.+|.+.... .......++.
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~ 215 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI 215 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence 99999999999999998532 12122233456799999999998875555555789999987444 2333555555
Q ss_pred CeEEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeec-CCCccee
Q 008496 359 PTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVN 402 (563)
Q Consensus 359 ~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~ 402 (563)
+..+..+.+... |+++ .+..+++|+.+..++...|. ||...+.
T Consensus 216 ~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 216 SLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred cceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEEEE
Confidence 666655554443 5544 45678888888777766666 5554443
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0045 Score=62.89 Aligned_cols=215 Identities=15% Similarity=0.229 Sum_probs=116.7
Q ss_pred CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee
Q 008496 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393 (563)
Q Consensus 314 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 393 (563)
..-....+.++|+|++++. ..||...|+......-.. .+...++.|.....||+-...+.|.++.--....++.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 3345678999999999888 557888888743322211 2345677888888899888888888864333333222
Q ss_pred ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008496 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 473 (563)
Q Consensus 394 ~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i 473 (563)
+.-. ..+..+-. |.+|+..+.+ .|.+||+.+++.+..+... .|..+.|++++. +++-.+ +.++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i 167 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSI 167 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeE
Confidence 2211 12333322 8888777666 8999999999999887643 389999999875 444444 4578
Q ss_pred EEEeCCCC--------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCe--eEEEEecCCCEEE
Q 008496 474 KLWDVELG--------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFE 537 (563)
Q Consensus 474 ~iwd~~~~--------------~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~--~~~~~~~~~~i~~ 537 (563)
.|++.... ..+.++ ...|.+.+|..| -++.| +.. +|+-+ -.|. .++++ ...++=
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYt-T~~-~lkYl--~~Ge~~~i~~l--d~~~yl 237 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYT-TSN-HLKYL--VNGETGIIAHL--DKPLYL 237 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEEEEE---SS--EE
T ss_pred EEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEE-cCC-eEEEE--EcCCcceEEEc--CCceEE
Confidence 88765433 233332 356888888766 33333 323 67663 3343 33333 345666
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEe
Q 008496 538 VCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 538 l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
+...+..++|.....++.+..+.+
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE-
T ss_pred EEEEccCCEEEEEECCCCEEEEEE
Confidence 777777788888878877766654
No 333
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.04 Score=57.94 Aligned_cols=75 Identities=17% Similarity=0.398 Sum_probs=51.8
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEE--EEEcCCCCE
Q 008496 471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDK 546 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~--l~w~~~g~~ 546 (563)
|.|.-+|+.+|+.++..........+. ..-.|..++.++.||.++.+|.++|+.+..+...+.+.. +.+..+|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 578889999999988765322111111 122455677788899999999999999988876655443 555567763
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.94 E-value=0.0012 Score=68.18 Aligned_cols=212 Identities=15% Similarity=0.125 Sum_probs=117.6
Q ss_pred eCCCCCEEEEe-eCCCcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEe---CCCeEEEEEcCCCcceeeecCC
Q 008496 323 WNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGH 397 (563)
Q Consensus 323 ~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h 397 (563)
+.|+|+.+... -..+.+.+.|..+.+...++.....+ ..++.......|+++. ...++...+.....-+..|.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni- 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI- 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-
Confidence 44566554322 22355667777776665555443322 2233333333344431 122232222221111111110
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEEEEeCCC----C-ceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 472 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~ 472 (563)
..+ -++.++|++... .++.|.+.|..+ + ..+..+ .-......+.++|+|. .+++++..+.+
T Consensus 279 -~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~t 344 (635)
T PRK02888 279 -ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPT 344 (635)
T ss_pred -HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCc
Confidence 000 123457776655 367899999887 3 333333 2334556778888875 57788888999
Q ss_pred EEEEeCCCCeE------------EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------CeeEEEEe
Q 008496 473 VKLWDVELGKL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYT 530 (563)
Q Consensus 473 i~iwd~~~~~~------------~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~----------~~~~~~~~ 530 (563)
|.|.|+.+.+. +.+..--.+| ...+|.++|..+.|--.|..|..|++.+ ..++....
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 99999987542 2333222333 5678999999888999999999999876 23444433
Q ss_pred cCCCEEEEE------EcCCCCEEEEE
Q 008496 531 GNGGIFEVC------WNKEGDKIAAC 550 (563)
Q Consensus 531 ~~~~i~~l~------w~~~g~~la~~ 550 (563)
-+-.+-.+. -.|||++|++.
T Consensus 424 V~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 424 VHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred CCCccceeeecCCCcCCCCCCEEEEc
Confidence 322222222 37889988776
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.0084 Score=60.87 Aligned_cols=198 Identities=12% Similarity=0.181 Sum_probs=95.0
Q ss_pred EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCc------ceeeecCCCcceeEEEECCCCCE
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------PIKTFAGHQGEVNCVKWDPTGSL 412 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~h~~~i~~~~~~~~~~~ 412 (563)
|.||+. .|..+..+....+.+..+.|..+..+++-..||.+++++..... .+....-....+....+..+|-.
T Consensus 63 I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Giv 141 (410)
T PF04841_consen 63 IQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIV 141 (410)
T ss_pred EEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEE
Confidence 555553 23334444444467889999999999999999999999985433 01111111112222233334533
Q ss_pred EEEEeCCCcEEEEeCCCCc-eeeeecccCCCEEEEEEccCCCCC--CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496 413 LASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGT--NNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 413 las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 489 (563)
+. ..++.+.+-.-.... ....+..-........+.+..... ...+.. ..+....++.+.+-+-...+. +.
T Consensus 142 vL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~- 214 (410)
T PF04841_consen 142 VL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---ID- 214 (410)
T ss_pred EE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---cc-
Confidence 33 334444433222111 111110000000101111110000 000000 111222233333222111100 11
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC--CCEEEEEEcCCC
Q 008496 490 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEG 544 (563)
Q Consensus 490 h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~--~~i~~l~w~~~g 544 (563)
..+++..++.||+|++||.-..+|.+.|.+..-.+.+..+... .....+.|--+.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 2368999999999999999999999999887655555555433 345566666553
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00032 Score=70.84 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=89.6
Q ss_pred cceeEEEECCCCCEEEEEeC---C-CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 399 GEVNCVKWDPTGSLLASCSD---D-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
..+..-+|+|+++.++-.+. . ..+.++++++++....+. ..+.-...+|+|+|+ .++.+...||...
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCCcc
Confidence 34666789999987654422 2 358888988776543322 222334457788775 4777778888755
Q ss_pred EE--eCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEE
Q 008496 475 LW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 549 (563)
Q Consensus 475 iw--d~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~-dg--~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~ 549 (563)
|| |+..+. +..+..-.+.-..-.|||||++|+-.+. .| .|.+.+...+..-......+.-....|+|||++|+.
T Consensus 264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 54 666555 3335433333345689999999986654 34 466667665554222222222226789999999998
Q ss_pred EEC
Q 008496 550 CFA 552 (563)
Q Consensus 550 ~~~ 552 (563)
...
T Consensus 343 ~~~ 345 (425)
T COG0823 343 ESS 345 (425)
T ss_pred Eec
Confidence 874
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.023 Score=57.67 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=104.8
Q ss_pred eEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec----ccCeEEE----ecCCC
Q 008496 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTLDV----DWRNN 368 (563)
Q Consensus 297 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~----~~~~~ 368 (563)
.|+||+..|.+...+.--.+.|.++.|+.+ ..|+....||+++++|+.... ++... ...+.+. .|..+
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence 599999999888776544589999999885 566677899999999986433 22211 1112221 12221
Q ss_pred ceEEEEeCCCeEEEEEc-CCCcceeee---cCCC-----c-cee-EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 008496 369 VSFATSSTDNMIYVCKI-GENRPIKTF---AGHQ-----G-EVN-CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~-~~~~~~~~~---~~h~-----~-~i~-~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (563)
.-++.-..++.+++..- ......+.+ .+.. . ... ...++.+....+....++.+.+-+-..... +
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 22333334455544332 211111111 1100 0 000 022344444445555555555333221111 1
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCEEEEEEcCCC
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTG 503 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~spdg 503 (563)
...+++..++.||++. ++|.-..+|.+.+.+..-.+.+..+... ..+...+.|.-+.
T Consensus 214 ~~~~~i~~iavSpng~---------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGK---------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred cCCCCeEEEEECCCCC---------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 1246799999999986 6777778899999987766666665433 2344666665443
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.92 E-value=4.5e-06 Score=83.53 Aligned_cols=194 Identities=21% Similarity=0.337 Sum_probs=123.0
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEEcCC---ceeEeeccCCCCEEEEEeCCCCCEEEEeeC-----CCcEEEEEC
Q 008496 275 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDV 344 (563)
Q Consensus 275 ~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~iwd~ 344 (563)
..+.|++|+-+. .+++.|..+|.|-+-.... .-.....+|..+.++++|++-....++++. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457888877644 5788899999998876532 223456788899999999986544444444 457999999
Q ss_pred CCC--ceeEEeeecc---cCeEEEecCCCceEE-EEeCCCeEEEEEcCCCcc-eeeecCCCcceeEEEECC-CCCEEEEE
Q 008496 345 KTE--EWKQQFEFHS---GPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDP-TGSLLASC 416 (563)
Q Consensus 345 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~~~~~~-~~~~las~ 416 (563)
.++ .......+.. .....++|..+..++ ++.....+.+++++.... ...+ .+..+..+..+| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 2333222222 233467887665554 445556788888764321 1111 122455677788 67787665
Q ss_pred eCCCcEEEEeC-C-CCceeeeeccc----CCCEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008496 417 SDDVTAKIWNM-K-QDKYVHDLREH----SKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE 479 (563)
Q Consensus 417 s~dg~i~iwd~-~-~~~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~ 479 (563)
+ ||.|-+||. . -..++..+... ...+..++|+|...+ ++++.+.| ++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--------lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--------LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--------hhhhhccCcceEEEeccc
Confidence 5 999999993 2 22233222211 234899999997643 56666665 689999875
No 339
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.89 E-value=0.03 Score=56.10 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=57.9
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccC--CCC---------CC-CCCCcEEEEE
Q 008496 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT--GSG---------TN-NPNQQLILAS 466 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~--~~~---------~~-~~~~~~~l~s 466 (563)
..+.+++.+|++++.|+...=|.|.++|+.++..++-+++.... .+.|... ... .. .....++++-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45778999999999888877899999999988777666654321 1122111 000 00 0111234555
Q ss_pred EeCCCeEEEEeCCCCeEEEEec
Q 008496 467 ASFDSTVKLWDVELGKLLYSLN 488 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~~~~~~~~ 488 (563)
+-.-|.|.||.++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6778999999999888776654
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.87 E-value=0.0055 Score=61.20 Aligned_cols=273 Identities=17% Similarity=0.237 Sum_probs=130.6
Q ss_pred CCceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeec-ccccC-CCCeEEEEECCCCCEEEEE
Q 008496 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEK-SKDVTTLDWNGEGTLLATG 292 (563)
Q Consensus 215 ~~~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~V~~l~~s~~g~~l~sg 292 (563)
...+....|||+|+.+|... ++.+.++++.++....-...+..... ..... ...+. -..-..+-|||||++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccceEECCCCCEEEEE
Confidence 46678899999999998875 57899988765432111111110000 00000 00000 1223568899999999987
Q ss_pred eCC-CeEEEEEcCCceeEeeccCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEE-ee----ecccCeEEE
Q 008496 293 SYD-GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE----FHSGPTLDV 363 (563)
Q Consensus 293 ~~d-g~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~ 363 (563)
..| ..|+.+... ...... -.+..+++-.-|.-... -.+.|+|+.+++.... .. ....-+..+
T Consensus 119 ~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v 189 (353)
T PF00930_consen 119 RFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRV 189 (353)
T ss_dssp EEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred EECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence 655 333333210 001111 12344444322221111 1456678877764321 11 112235667
Q ss_pred ecCCCce-EEEEeCC-----CeEEEEEcCCCcceeeecC-CCcc---eeEEEEC-CCCC-EEEEEeCCCcEEEE--eCCC
Q 008496 364 DWRNNVS-FATSSTD-----NMIYVCKIGENRPIKTFAG-HQGE---VNCVKWD-PTGS-LLASCSDDVTAKIW--NMKQ 429 (563)
Q Consensus 364 ~~~~~~~-~~~~~~d-----~~i~~~~~~~~~~~~~~~~-h~~~---i~~~~~~-~~~~-~las~s~dg~i~iw--d~~~ 429 (563)
.|.++.. ++..-.+ ..+.+|+..++.....+.. ..+. .....|. +++. +|.....||--+|| +...
T Consensus 190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 7866554 4433221 2356677755443222211 1222 2345554 5555 44455577866555 4444
Q ss_pred CceeeeecccCCCEEE-EEEccCCCCCCCCCCcEEEEEEeCCC----eEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCC
Q 008496 430 DKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 504 (563)
Q Consensus 430 ~~~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~ 504 (563)
+. ...+....-.|.. +.|.+.+. .+..++..++ .|..-++..+..+..++.....-..++|||+|+
T Consensus 270 ~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 270 GK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp SE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred cc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 44 3345545555644 56666543 3555555432 455555652344556654444437999999999
Q ss_pred EEEE
Q 008496 505 YLAS 508 (563)
Q Consensus 505 ~las 508 (563)
+++.
T Consensus 341 y~v~ 344 (353)
T PF00930_consen 341 YYVD 344 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=8e-05 Score=74.73 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.....|.+.+++|+...|+.|..||.|.+||...+....+ ...-.+..++|+|+|..+++|+..|.+.+||+-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3667899999999999999999999999999987643322 333446789999999999999999999999974
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0005 Score=69.70 Aligned_cols=142 Identities=17% Similarity=0.274 Sum_probs=82.7
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 477 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd 477 (563)
.-....+.++|+|++++.| .||...|+.....+... .+....+.|.+.+ -+|+-...++|+|+.
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----------~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----------RYAVLESSSTIKIYK 95 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----------EEEEE-TTS-EEEEE
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----------cEEEEECCCeEEEEE
Confidence 3456789999999999885 46777777743333221 2344567888754 366666688899963
Q ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496 478 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 557 (563)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~~~v~ 557 (563)
--..+....+.. ...+..|-. |..|+..+.+ .|.+||+.++++++.+.... |..+-|+++|+++|..+.+ ++.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp TTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEE
T ss_pred cCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEE
Confidence 222221112221 113444433 8888877765 79999999999999987553 8899999999999999766 677
Q ss_pred EEEee
Q 008496 558 VLDFR 562 (563)
Q Consensus 558 v~~~~ 562 (563)
|++..
T Consensus 169 il~~~ 173 (443)
T PF04053_consen 169 ILKYN 173 (443)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 77653
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00073 Score=70.24 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=83.8
Q ss_pred EEEEECCCCCEEEEEeCC----CeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 278 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
+-..|+|...++++++.. |.|.||--.|.... +.+.| +++++|+|..-.|+.|=.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 345799999999998764 88999976665322 22222 4679999998778888778999999998888888
Q ss_pred EeeecccCeEEEecCCC-ceEEEEeCCCeEEEEEcCCC
Q 008496 352 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN 388 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~ 388 (563)
....|..++..++|..+ ..+++...-|.+..|.....
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 88889999999999765 56677777888999887643
No 344
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.78 E-value=7.2e-06 Score=50.50 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.5
Q ss_pred ccchhhhhHHHHHhcCCceehhccccccCCc
Q 008496 6 SEELNYLVFRYLQESGLLHSAFVLGYEAGIN 36 (563)
Q Consensus 6 s~evN~Li~rYlqE~g~~~sA~~~~~E~~~~ 36 (563)
-.++|.||+.||++.||..||.+|..|+.+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 3579999999999999999999999999875
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.7e-05 Score=74.63 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=61.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe-cCCCEE-EEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIF-EVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~-~~~~i~-~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
..|.-+.|+|.-..||.+..+|.|.+..+. .+.+.+++ .+..+. ++||+|||+.||+|+.||+|++.|+-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 357789999999999999999999999987 77778877 445565 99999999999999999999999973
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.75 E-value=0.047 Score=54.84 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=132.7
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcC-CCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC
Q 008496 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (563)
Q Consensus 217 ~V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d 295 (563)
.|+.+.|.++..-||.|-..|.+.||.+....... ...... ......+-........++.+.--.+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~di~~r~~~~-------- 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD---LDYNFRRFSLNNSPGKLTDISDRAPPS-------- 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGGSS-SEEE-GGG--TT--------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc---cCcccccccccCCCcceEEehhhCCcc--------
Confidence 48899999998889999999999999876433221 000000 000000000000011122111000000
Q ss_pred CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEE
Q 008496 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 374 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (563)
+ .+| .....+....++|++++.+.-| +++.|..+|++.|.|++....+..-.... .+
T Consensus 72 --~----~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~--- 129 (395)
T PF08596_consen 72 --L----KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SF--- 129 (395)
T ss_dssp -------SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------
T ss_pred --c----ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc------------cc---
Confidence 0 001 1122344568999999997555 88899999999999998766544321111 00
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcceeEEEEC-----CCC---CEEEEEeCCCcEEEEeCCC---Ccee----eeeccc
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----PTG---SLLASCSDDVTAKIWNMKQ---DKYV----HDLREH 439 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~-----~~~---~~las~s~dg~i~iwd~~~---~~~~----~~~~~~ 439 (563)
.-......|+++.|. .|+ -++++|.+.|.+.+|.+.- +... .....+
T Consensus 130 ------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~ 191 (395)
T PF08596_consen 130 ------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH 191 (395)
T ss_dssp ------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S
T ss_pred ------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC
Confidence 000011123333332 222 3567788888888886531 2221 111245
Q ss_pred CCCEEEEEEc-cC-CCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE-----cC
Q 008496 440 SKEIYTIRWS-PT-GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SP 501 (563)
Q Consensus 440 ~~~i~~~~~~-p~-~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-----sp 501 (563)
.++|..+..- .+ |.... ...-+.+++.+ .+..+|++...+.+..+...........+++ ..
T Consensus 192 ~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~ 270 (395)
T PF08596_consen 192 DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRN 270 (395)
T ss_dssp S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EE
T ss_pred CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccC
Confidence 5666665522 21 11100 00011233333 4678999999888776655432223334455 23
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCC-----EEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 502 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 502 dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~-----i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
.+..|++-..+|.|++|.+..-+.+....-... +...+++++|+.+...+.. .+.++
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~ 332 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLF 332 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEE
T ss_pred CceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEE
Confidence 567888889999999999998887777654321 2356778889877666333 44443
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.73 E-value=0.021 Score=54.77 Aligned_cols=252 Identities=13% Similarity=0.170 Sum_probs=136.9
Q ss_pred EEEECCCCCEEEEEeC----------CCeEEEEEcCCce-eE--eecc-CCC----CEEEEEeCCCCCEEEEee--CCCc
Q 008496 279 TLDWNGEGTLLATGSY----------DGQARIWSTNGDL-KC--TLSK-HKG----PIFSLKWNKKGDYLLTGS--CDKT 338 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~~----------dg~i~vw~~~~~~-~~--~~~~-h~~----~V~~l~~~~~~~~l~s~s--~D~~ 338 (563)
.+..+|+|+.+.+++. .-.|.+||...-. .. .+.. |.. ....+.++.+|++++... --.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3567899988886532 3478999976431 11 2222 111 122356788999887653 4568
Q ss_pred EEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC-Ccceee----ecCCCc-ceeEEEECCCCCE
Q 008496 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL 412 (563)
Q Consensus 339 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~i~~~~~~~~~~~ 412 (563)
|.|-|+..++++..+.... ...-.- ..+..|.+-+.||.+....++. +++... |..-.. .+..-++...+..
T Consensus 120 VtVVDl~~~kvv~ei~~PG-C~~iyP-~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG-CWLIYP-SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS-EEEEEE-EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEEECCCCceeeeecCCC-EEEEEe-cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 9999999988877665322 222222 2345688888999988888873 333221 111111 1233344444444
Q ss_pred EEEEeCCCcEEEEeCCCCceee--eecccCCCEEEEEEccCCCCC---CCCCCcEEEE-EEeCCC-------eEEEEeCC
Q 008496 413 LASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGT---NNPNQQLILA-SASFDS-------TVKLWDVE 479 (563)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~---~~~~~~~~l~-s~s~dg-------~i~iwd~~ 479 (563)
++--+.+|.|+--|+....... .+..-...-..-.|.|.|-.. +.+.+.++++ --+.+| .|-++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 4556777877777765543211 110000000001355544321 1122233322 222222 37777999
Q ss_pred CCeEEEEecCCCCCEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCeeEEEEecCC
Q 008496 480 LGKLLYSLNGHREPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNG 533 (563)
Q Consensus 480 ~~~~~~~~~~h~~~i~~l~~spdg~-~lasg-s~dg~v~iw~~~~~~~~~~~~~~~ 533 (563)
+++.+.++.. ..++.+|+.|.|.+ +|.+. ..++.|.|||..+|+++++...-+
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999988863 34688999998864 66554 457899999999999999886543
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00022 Score=71.88 Aligned_cols=93 Identities=20% Similarity=0.408 Sum_probs=77.5
Q ss_pred CCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 008496 440 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 440 ~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~spdg~~lasgs~dg~v~iw 518 (563)
...+..+.|+|.-. ++|.+..+|.|-+..+. .+.++++.-|..+++ +++|.|||+.||.|=.||+|++-
T Consensus 20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 45678889999754 78999999999998887 777888887777777 99999999999999999999999
Q ss_pred ecCCCeeEEE--EecCCCEEEEEEcC
Q 008496 519 SLKEGKIVKT--YTGNGGIFEVCWNK 542 (563)
Q Consensus 519 ~~~~~~~~~~--~~~~~~i~~l~w~~ 542 (563)
|+.++..+.. +.....|..+-|++
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999988777 44455667777763
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00096 Score=68.24 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=86.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeec--cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 353 (563)
.|.--+++..+++++.|+.-|.+.+|+..+.....+. +-.+.+..+..|++..+++.|+..|.|.++-++.+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-- 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-- 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc--
Confidence 3444566778899999999999999998876544433 355566777788888888888888999888765432110
Q ss_pred eecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
..+++. ++ ..|...|+|++|++++..+.+|...|+|.+-.++.
T Consensus 113 ---------------~~~~t~--------~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 ---------------LDYVTP--------CD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---------------ceeecc--------cc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000000 00 12778899999999999999999999998887766
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.64 E-value=0.065 Score=51.43 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=122.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEe-----------
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF----------- 353 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----------- 353 (563)
.++.|+.|+.+| +.+++...........+..+|..+...|.-+.|++-+ |+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 467899999988 8888873222222222344599999999877777654 599999998654332210
Q ss_pred --ee-cccCeEEEe---cCCCceEEEEeCCCeEEEEEcCCC-----cceeeecCCCcceeEEEECCCCCEEEEEeCCCcE
Q 008496 354 --EF-HSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (563)
Q Consensus 354 --~~-~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i 422 (563)
.. ....+..+. ......+........|.+|..... +..+.+.- ...+.+++|. ++.|+.|..+ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ce
Confidence 00 011122222 223334444555557777766542 33444432 3567888888 5566666654 47
Q ss_pred EEEeCCCCceeeeecccC------------CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--Eec
Q 008496 423 KIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN 488 (563)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~------------~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~ 488 (563)
.+.|+.++....-+.... .++..+... +++ +|++ .|..-.+.|. .|+... .+.
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~e-~Ll~--~~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---------DNE-FLLC--YDNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---------Cce-EEEE--ecceEEEEcC-CCCcCcccEEE
Confidence 778888665432221111 111111111 111 3332 2333333333 233222 222
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC
Q 008496 489 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 532 (563)
Q Consensus 489 ~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~ 532 (563)
- .....++++. ..||+..+.+ .|.||++.++++++++...
T Consensus 227 W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 227 W-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 1 2234556653 3477776654 5999999999999988754
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.044 Score=49.73 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=114.4
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEee----ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCccee
Q 008496 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 402 (563)
Q Consensus 327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~ 402 (563)
..+++.|+..+.++.-|..++...-.-. ....+++ -+..++.+...+.+|+.+..++..+..|..-..--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 3567778888888888888776543211 1111111 122367778888899988888876666553322222
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG- 481 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~- 481 (563)
.....+++.++..|+.|++...-|.++..++...+-..+...+-+..|. +..++ .+...|.|.--....+
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-------~~sly--~a~t~G~vlavt~~~~~ 168 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-------DGSLY--AAITAGAVLAVTKNPYS 168 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-------CceEE--EEeccceEEEEccCCCC
Confidence 4556889999999999999999999998888765433222222222221 11222 3333344433333222
Q ss_pred -eEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEE-EEEEc-CCCCEEEEE
Q 008496 482 -KLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWN-KEGDKIAAC 550 (563)
Q Consensus 482 -~~~~~~~~h~~~i~~l~~sp--dg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~-~l~w~-~~g~~la~~ 550 (563)
..++... ...||.+ +| -+.++..+.-||.+.-++ ..|+.+..+...++|+ +.+-+ |.-+.|..+
T Consensus 169 ~~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 169 STEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred cceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 1111111 1234432 12 144566677788887777 6677777776666654 23333 333444444
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.098 Score=52.73 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=125.2
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeecccCCC
Q 008496 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKE 442 (563)
Q Consensus 366 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~~ 442 (563)
.....++....++.|.+.+....+.+....--. ....++++|+++.+..+.. ++++.+.|..+.+.......-..+
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 344466777777888888865555443332111 4557999999977655444 688888998888877665433334
Q ss_pred EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-E----ecCCCCCEEEEEEcCCCCEEEEEeC---CCc
Q 008496 443 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---DKS 514 (563)
Q Consensus 443 i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~----~~~h~~~i~~l~~spdg~~lasgs~---dg~ 514 (563)
..+++.|+|. .++++-+.++.|.+.|........ . +..... -..+.++|+|.++...-. ++.
T Consensus 163 -~~~a~~p~g~--------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 163 -TGVAVDPDGN--------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred -ceEEECCCCC--------eEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCce
Confidence 7788888875 345555788999999977655442 1 222222 367899999986654433 369
Q ss_pred EEEEecCCCeeEEE-EecCC-CEEEEEEcCCCCEEEEEEC-CCeEEEEEee
Q 008496 515 MHIWSLKEGKIVKT-YTGNG-GIFEVCWNKEGDKIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 515 v~iw~~~~~~~~~~-~~~~~-~i~~l~w~~~g~~la~~~~-~~~v~v~~~~ 562 (563)
+.+.|..++.+... +.... ....+..+|+|+.+.+... .+.+.++|.+
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 99999999887765 33323 4667899999998887744 4778888753
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00021 Score=44.48 Aligned_cols=39 Identities=54% Similarity=0.961 Sum_probs=34.2
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
++++..+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666777888999999999999999999999999996
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.58 E-value=0.092 Score=51.49 Aligned_cols=271 Identities=15% Similarity=0.208 Sum_probs=122.9
Q ss_pred EECCCCCEEEEEe-CCCe--EEEEEcCCceeEeeccCCC-CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeec
Q 008496 281 DWNGEGTLLATGS-YDGQ--ARIWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (563)
Q Consensus 281 ~~s~~g~~l~sg~-~dg~--i~vw~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 356 (563)
+|.++|+.|+.++ .||. +.+.|+.......|....+ ...+..++|+++.++-.....+|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5788997666554 4654 4555666666666655432 2335667888888766556678888999998766655544
Q ss_pred ccCeEEEecC--CCceEEEE-----------------------eCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496 357 SGPTLDVDWR--NNVSFATS-----------------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (563)
Q Consensus 357 ~~~~~~~~~~--~~~~~~~~-----------------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 411 (563)
..-.-...|. .+...+.+ .....|+..++.++..-..+. -...+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 3322222331 11111111 011223334444433322222 233456788888654
Q ss_pred -EEEEEeC---CC-cEEEEeCCCCc-eeeeecccC--CCEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCC
Q 008496 412 -LLASCSD---DV-TAKIWNMKQDK-YVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVEL 480 (563)
Q Consensus 412 -~las~s~---dg-~i~iwd~~~~~-~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~ 480 (563)
+|+-|.+ +. .-|||-+++.. ....+..+. ..+..=-|.|+|.. +...+. +.+..|.-+|+.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence 4555554 33 24778665332 122222222 22344468888752 122222 2233566677777
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEecCCCeeEEEEec---------CCCE
Q 008496 481 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTG---------NGGI 535 (563)
Q Consensus 481 ~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg----------------~v~iw~~~~~~~~~~~~~---------~~~i 535 (563)
++...... ..+....--|+||+++|-=+.|. .|.++++..+........ +..+
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 65432221 12334455689999887534332 466788887764322221 1111
Q ss_pred --EEEEEcCCCCEEEEEE-CCCeEEEEEe
Q 008496 536 --FEVCWNKEGDKIAACF-ANHTVCVLDF 561 (563)
Q Consensus 536 --~~l~w~~~g~~la~~~-~~~~v~v~~~ 561 (563)
..++|+|||+.|...+ ..|...||=+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4689999999887654 4667777643
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.54 E-value=0.0043 Score=65.56 Aligned_cols=179 Identities=12% Similarity=0.153 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe------CCCcEEEEeCCCCceeeeecccCCCEEEEEEcc
Q 008496 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (563)
Q Consensus 377 d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p 450 (563)
+|.+...+-....|+.-..+....+...+++|+|+.+|... .|+.-.||-...+.....+.. ....+.-.|+|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWsp 406 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSL 406 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECC
Confidence 55554433222233333333334678899999999887655 344445553322221122221 22367789999
Q ss_pred CCCCCCCC--CCcEEEEE-EeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EecCCCe
Q 008496 451 TGSGTNNP--NQQLILAS-ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGK 524 (563)
Q Consensus 451 ~~~~~~~~--~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~i---w~~~~~~ 524 (563)
+|...+.- ......++ ....+.+.+.++..+.... .....|..+.|||||..||.-. +++|.+ -....|.
T Consensus 407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 86521100 00111111 1123444444555443322 2345799999999999888655 477777 3434453
Q ss_pred e-E---EEE-ecCCC-EEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 525 I-V---KTY-TGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 525 ~-~---~~~-~~~~~-i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
. + ..+ ..-+. +.++.|..++..+ ++..++...||-+
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 1 1 111 12222 5789999999854 5555555555544
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00022 Score=44.40 Aligned_cols=36 Identities=44% Similarity=0.793 Sum_probs=32.3
Q ss_pred eeEecCCCCceEEEEECCCCCEEEEeeCCCcEEEEe
Q 008496 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 243 (563)
Q Consensus 208 ~~~l~~h~~~V~~~~~sp~~~~latgs~D~~i~iW~ 243 (563)
+..+..|...|.+++|+|.+.++++|+.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345678889999999999999999999999999996
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.48 E-value=0.017 Score=45.63 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=65.0
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecCCCEEEEEE-
Q 008496 462 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW- 540 (563)
Q Consensus 462 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w- 540 (563)
.-|+.||.|..||+|+-. ..+.++... ..|++++-... ..++.|-.+|+|-+|+-. ..+...+.+..+.++++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence 468899999999999754 677777754 56778777666 567888999999999753 33444455555666553
Q ss_pred --cCCC-CEEEEEECCCeEEE
Q 008496 541 --NKEG-DKIAACFANHTVCV 558 (563)
Q Consensus 541 --~~~g-~~la~~~~~~~v~v 558 (563)
+.|| ..|++|.+||.|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 3344 38999999998743
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.43 E-value=0.057 Score=54.25 Aligned_cols=235 Identities=14% Similarity=0.225 Sum_probs=121.5
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCC---------
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE--------- 387 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------- 387 (563)
.|+.+.|.+...-|+.|...|.|.||-....+.-. .....+..+..+. .+-.....+ .+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~---~~~~~~~~~--~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFR---RFSLNNSPG--KLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS---SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccc---cccccCCCc--ceEEehhhCCcccccc
Confidence 57899999998899999999999998654322111 0000011111000 000000001 1111111
Q ss_pred CcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee--ecc------cCCCEEEEEEccCCCCCCCCC
Q 008496 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LRE------HSKEIYTIRWSPTGSGTNNPN 459 (563)
Q Consensus 388 ~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~------~~~~i~~~~~~p~~~~~~~~~ 459 (563)
-.|...+....++|++++.| |=.++|.|..+|.+.|.|++....+.. +.. ....++++.|..-... ....
T Consensus 76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~-~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG-GDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T-TSSS
T ss_pred cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC-CCcc
Confidence 12445555668899999997 667999999999999999988776654 222 2345788888742211 1122
Q ss_pred CcEEEEEEeCCCeEEEEeCCC---CeE----EEEecCCCCCEEEEE-EcCC-C--------------------CEEEEEe
Q 008496 460 QQLILASASFDSTVKLWDVEL---GKL----LYSLNGHREPVYSLA-FSPT-G--------------------EYLASGS 510 (563)
Q Consensus 460 ~~~~l~s~s~dg~i~iwd~~~---~~~----~~~~~~h~~~i~~l~-~spd-g--------------------~~lasgs 510 (563)
....|..|...|.+.+|.+.- +.- ......+.++|..|. |+.+ | .+++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv- 232 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV- 232 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence 345788899999999997641 211 112234667777664 5322 1 134444
Q ss_pred CCCcEEEEecCCCeeEEEEecCCC-EEEEEE-----cCCCCEEEEEECCCeEEEEEe
Q 008496 511 LDKSMHIWSLKEGKIVKTYTGNGG-IFEVCW-----NKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 511 ~dg~v~iw~~~~~~~~~~~~~~~~-i~~l~w-----~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+..++|+...+.+.......... ...+++ ...+..|++-+.+|.+.+|.+
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 466799999988776544332212 223445 345677888899999999864
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.42 E-value=0.053 Score=53.36 Aligned_cols=208 Identities=14% Similarity=0.166 Sum_probs=117.4
Q ss_pred cEEEEECCCCceeEEeeecccC-eEE---EecCC-----CceEEEEeC----------CCeEEEEEcCCC----cceeee
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGP-TLD---VDWRN-----NVSFATSST----------DNMIYVCKIGEN----RPIKTF 394 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~-~~~---~~~~~-----~~~~~~~~~----------d~~i~~~~~~~~----~~~~~~ 394 (563)
.|++.|..+.+.+..+.+.... +.+ +.+.. ...++.+.. .|.|+++++... ..+...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777787777776666654432 222 22232 233444321 288999999874 222222
Q ss_pred --cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeee-ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 395 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 395 --~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
....+.|.+++-- .+.++++. .+.|.+|++...+ .... +......+.++....+ +++.|...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence 2246778888765 44444333 4689999988776 3322 1122335666665432 67788887
Q ss_pred CeEEEEeCCC-CeEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------C--ee--EEEEecCCCEE
Q 008496 471 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KI--VKTYTGNGGIF 536 (563)
Q Consensus 471 g~i~iwd~~~-~~~~~~~--~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~-------~--~~--~~~~~~~~~i~ 536 (563)
..|.++..+. +..+..+ ......++++.|-+|+..++.+..+|.|.++.... + ++ ...+.-...|+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 8888774432 3322222 22345688999987777999999999999998763 2 22 23344455677
Q ss_pred EE---EEcC--CCC------EEEEEECCCeEEEE
Q 008496 537 EV---CWNK--EGD------KIAACFANHTVCVL 559 (563)
Q Consensus 537 ~l---~w~~--~g~------~la~~~~~~~v~v~ 559 (563)
.+ +..| .+. .+..+..+|.+.++
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 66 5555 222 47788899988743
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.41 E-value=3.9e-05 Score=77.04 Aligned_cols=182 Identities=15% Similarity=0.258 Sum_probs=112.1
Q ss_pred ceEEEEeCCCeEEEEEcCCCcc--eeeecCCCcceeEEEECC-CCCEEEEEe----CCCcEEEEeCCCCc--eee--eec
Q 008496 369 VSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP-TGSLLASCS----DDVTAKIWNMKQDK--YVH--DLR 437 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~-~~~~las~s----~dg~i~iwd~~~~~--~~~--~~~ 437 (563)
..++.+..+|.|-++..+...- -....+|...+++++|++ |.++||.|- .|..+.|||+.+.- +.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 3456677778888887765322 233456778899999998 456677664 36689999987762 111 121
Q ss_pred c-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCc
Q 008496 438 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKS 514 (563)
Q Consensus 438 ~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-dg~~lasgs~dg~ 514 (563)
+ -.....+++|-.+. .++.+|.....+.++|++-.. ....+. ...+..+..+| .+.|+++-. ||.
T Consensus 151 ~~~l~gqns~cwlrd~---------klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs~~-dg~ 218 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDT---------KLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCSNS-DGD 218 (783)
T ss_pred cccccCccccccccCc---------chhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceeccc-cCc
Confidence 1 12233466665332 267788888899999987221 111221 22355567777 677888766 999
Q ss_pred EEEEec-CCCe-eEEEEec-----CCCEEEEEEcCCCC-EEEEEEC-CCeEEEEEee
Q 008496 515 MHIWSL-KEGK-IVKTYTG-----NGGIFEVCWNKEGD-KIAACFA-NHTVCVLDFR 562 (563)
Q Consensus 515 v~iw~~-~~~~-~~~~~~~-----~~~i~~l~w~~~g~-~la~~~~-~~~v~v~~~~ 562 (563)
|.+||. ++-+ ++..... ...++.++|.|... .||++.. .++|..+|++
T Consensus 219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999993 3221 1221111 23488999999754 5555544 4577777765
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.40 E-value=0.11 Score=48.30 Aligned_cols=198 Identities=13% Similarity=0.217 Sum_probs=111.1
Q ss_pred eeccCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEEEe-CCCeEEEEEcC
Q 008496 310 TLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG 386 (563)
Q Consensus 310 ~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~ 386 (563)
.+.+-...+.+|.|+|+.+. +++....+.|...+. .++.++.+.... +..-.+.+..+..|+... .++.++++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 45555667999999998665 555666778877886 477777776654 456677788888887766 47888888874
Q ss_pred CCc---c---eeeec-----CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC---Ccee--eee------cccCCCEE
Q 008496 387 ENR---P---IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYV--HDL------REHSKEIY 444 (563)
Q Consensus 387 ~~~---~---~~~~~-----~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~---~~~~--~~~------~~~~~~i~ 444 (563)
... . +..+. .++..+-.++|+|.++.|+.+-+..-.+||.++. ...+ ... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 11121 2445688999999877777777776677776543 1111 111 12334567
Q ss_pred EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--cC--CC-----CCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 445 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NG--HR-----EPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 445 ~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~--h~-----~~i~~l~~spdg~~lasgs~dg~v 515 (563)
++.+.|... .+++-......|..+| ..|+.+..+ .. |. ..--.|+|.++|++.++ |.-+..
T Consensus 175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 788877642 3566677888999999 557765543 32 10 23578999999976665 455555
Q ss_pred EEE
Q 008496 516 HIW 518 (563)
Q Consensus 516 ~iw 518 (563)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.25 E-value=0.3 Score=50.00 Aligned_cols=240 Identities=16% Similarity=0.254 Sum_probs=122.6
Q ss_pred ceEEEEECCCCCEEEEe-eCC----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEE
Q 008496 217 EVCACAWSPAGSLLASG-SGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (563)
Q Consensus 217 ~V~~~~~sp~~~~latg-s~D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s 291 (563)
.+..+++||++++||.+ +.. ..+++.|+.+++... ..+... .-..+.|.++++.|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEEE
Confidence 34468899999988754 222 469999998763210 011110 1124899999988877
Q ss_pred EeCCC-----------eEEEEEcCCce---eEeeccCCCC--EEEEEeCCCCCEEEEeeCC----CcEEEEECCCC----
Q 008496 292 GSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE---- 347 (563)
Q Consensus 292 g~~dg-----------~i~vw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~---- 347 (563)
...+. .|+.|...... ...+.....+ ...+..++++++|+..+.. ..+.+-|+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 66543 36777765432 2344443333 5688899999997654332 23666677664
Q ss_pred -ceeEEeeecccCeEEEecCCCceEEEEe---CCCeEEEEEcCCCcc---eeeecCCCcc--eeEEEECCCCC-EEEEEe
Q 008496 348 -EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQGE--VNCVKWDPTGS-LLASCS 417 (563)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~~--i~~~~~~~~~~-~las~s 417 (563)
.+........+....+...++..++.+. ..+.|...++..... ...+..|... +..+.. .+. ++++-.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~ 344 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR 344 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE
Confidence 3333333233333444444444444432 335666677765542 2244455553 444444 344 444555
Q ss_pred CCC--cEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeE
Q 008496 418 DDV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKL 483 (563)
Q Consensus 418 ~dg--~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~ 483 (563)
.++ .|+++++..+.....+.. -.+.|..+...+.+ ..+.+...|.- +++.-||+.+++.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~-------~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS-------DELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT--------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCC-------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 555 467888873333332222 22334443322222 22344444442 4667777777664
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.22 Score=48.20 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=89.9
Q ss_pred cceeEEEECCCCCEEEEEeC-----C----CcEEEEeCC-CCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008496 399 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 468 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s 468 (563)
...+.+...|+|.+.++... . ..-.+|.+. .+..+..+..+-..-..|+|+|+++ .+.++=+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence 34667888899887665433 0 112455555 3444444444444456799999885 2555556
Q ss_pred CCCeEEEEeCCC--C----eE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecCCCeeEEEEecC-CCEEEEE
Q 008496 469 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC 539 (563)
Q Consensus 469 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg-~v~iw~~~~~~~~~~~~~~-~~i~~l~ 539 (563)
..+.|.-|++.. + +. ...+....+.--.++...+|.+.+++-.+| .|.+|+.. |+++..+... ..+..++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 667788777652 1 11 122222334445677778888876555554 89999988 9988888765 5667777
Q ss_pred Ec-CCCCEEEEEECC
Q 008496 540 WN-KEGDKIAACFAN 553 (563)
Q Consensus 540 w~-~~g~~la~~~~~ 553 (563)
|- ++.+.|.+.+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 74 355666655443
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.23 Score=48.03 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=107.5
Q ss_pred ECCCCC-EEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-c-
Q 008496 282 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-G- 358 (563)
Q Consensus 282 ~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~- 358 (563)
|.++.. ++.+--..+.|.-|+........+. +.+.+.++..-..+..|+++. .-+.++++.++..+..+.... +
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 556555 4455556677888887644333333 223334444444444555553 345666665554422221111 1
Q ss_pred ---CeEEEecCCCceEEEEeCC----------CeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEeC-CCcEE
Q 008496 359 ---PTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 423 (563)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~-dg~i~ 423 (563)
...+.....+..|..+... ..-.+|.+. .+..++.+..|-..-+.|+||||++.|..+-. .+.|.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 1122222222333322222 011344444 34444555555556789999999987665544 56777
Q ss_pred EEeCCCCceeeeecccCCCEEEEEE-----ccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEecCCCCCEEEE
Q 008496 424 IWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYSL 497 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~i~~~~~-----~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~i~~l 497 (563)
-|++.... ...... ...+.+ .|+|.. ...+..++. ++-.+| .|..|+.. |+++..+.-....++++
T Consensus 189 r~~~d~~~----g~~~~~-~~~~~~~~~~G~PDG~~-vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 189 RYDLDPAT----GPIGGR-RGFVDFDEEPGLPDGMA-VDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred EEecCccc----CccCCc-ceEEEccCCCCCCCceE-EeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 77665200 000111 111111 233321 112233333 333343 89999988 88888877665667888
Q ss_pred EE-cCCCCEEEEEe
Q 008496 498 AF-SPTGEYLASGS 510 (563)
Q Consensus 498 ~~-spdg~~lasgs 510 (563)
+| .|+.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 88 55655554433
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.32 Score=49.09 Aligned_cols=217 Identities=18% Similarity=0.152 Sum_probs=138.3
Q ss_pred EEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEe--CCCeEEEEEcCCCcceeee
Q 008496 319 FSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 319 ~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~ 394 (563)
.++..++.++.++ +...++.|.+.|..+............ ..+.+++.....+++-. .++.+.+.+..+.+.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 4667788887554 444568999999877766665544332 23444444555566655 4688888888888777664
Q ss_pred cCCCcceeEEEECCCCCEEEEE-eCCCcEEEEeCCCCceee-e---ecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~-s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
..-..+ ..++++|+|+.+..+ ..++.|.+.|........ . ...-...-..+.++|++. .+.++...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~ 227 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG 227 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence 433334 789999999965544 478899999976655442 1 011112235567777764 23333333
Q ss_pred --CCeEEEEeCCCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCeeEEEEecCC----CEEEEEEc
Q 008496 470 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG----GIFEVCWN 541 (563)
Q Consensus 470 --dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~spdg~~lasgs~-dg~v~iw~~~~~~~~~~~~~~~----~i~~l~w~ 541 (563)
++.+...|..++..... ...-...-..+.++|+|.++.+... .+.|.+-|..+..+........ .+..+++.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 37899999988777654 2211113456899999999887744 4889999999888877764322 25555555
Q ss_pred CCC
Q 008496 542 KEG 544 (563)
Q Consensus 542 ~~g 544 (563)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 543
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.01 Score=63.82 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=91.3
Q ss_pred eCCCeEEEEEcCCCcceeeecCCCcc-eeEEEECC-----CCCEEEEEeCCCcEEEEeCCCCc--eeee-ec--ccCCCE
Q 008496 375 STDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSKEI 443 (563)
Q Consensus 375 ~~d~~i~~~~~~~~~~~~~~~~h~~~-i~~~~~~~-----~~~~las~s~dg~i~iwd~~~~~--~~~~-~~--~~~~~i 443 (563)
...+.++..|+..++.+..+..|... |..++-.. +..-...|-.+..+..||.+-.. ++.. .+ ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 35678999999999999999877654 54443211 12234567778889999987542 2211 11 122344
Q ss_pred EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 444 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 444 ~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
.|++-..+| .||.||.+|.||+||--..+....+.+...||..|..+.||+||++.+ +..|.+++.
T Consensus 581 s~~aTt~~G----------~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG----------YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc----------eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 555555554 689999999999999432233344567789999999999999988655 456777775
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.17 E-value=0.43 Score=50.26 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=83.5
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEeeeccc----CeEE-EecCCCceEEEEe-----CCCeEEEEEcCCCcceeeecC
Q 008496 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG 396 (563)
Q Consensus 327 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~ 396 (563)
+..++.++.|+.+...|..+++.+-.+..... .+.. -...++..++..+ .++.|+-++..+++.+-.+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 34677888999999999999987655432110 0000 0011233333322 257788878776654432211
Q ss_pred C-------------------------------Ccce-eEEEECCCCCEEEEEeCC-----C-----------cEEEEeCC
Q 008496 397 H-------------------------------QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMK 428 (563)
Q Consensus 397 h-------------------------------~~~i-~~~~~~~~~~~las~s~d-----g-----------~i~iwd~~ 428 (563)
- .+.+ ..+.++|...+|..+..+ + +|.--|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 0111 134677766666555422 2 34455777
Q ss_pred CCceeeeecccCCCEEEEEE--ccCCCC-CCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008496 429 QDKYVHDLREHSKEIYTIRW--SPTGSG-TNNPNQQLILASASFDSTVKLWDVELGKLL 484 (563)
Q Consensus 429 ~~~~~~~~~~~~~~i~~~~~--~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 484 (563)
+++..-.++.....+..... .|.-.. ..+.....+++.+..+|.+.+.|.++|+.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 77766555432222221110 000000 000011247889999999999999999886
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.17 E-value=0.017 Score=62.18 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=93.7
Q ss_pred CEEEE-EeCCCcEEEEeCCCCceeeeecccCCC-EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008496 411 SLLAS-CSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS 486 (563)
Q Consensus 411 ~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 486 (563)
++|+. ......+.-.|+..++.+.....|... |.. +.|+.......+.+. ..|-.+..+..||.|... ++..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~t--flGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQT--FLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCce--EEEECCCceEEeccCCCCCceeec
Confidence 44433 345678888899999999998877643 444 446543322222332 346678899999998532 3321
Q ss_pred -ec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEe
Q 008496 487 -LN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 487 -~~--~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.. .......|++-+.+| +||+||.+|.|++||. .|+.-++ +++ ..+|.+|+-+.||++|.+.+. ..+.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 11 123456777777776 6899999999999994 3433233 333 567999999999998776644 36667664
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.013 Score=58.38 Aligned_cols=138 Identities=10% Similarity=0.207 Sum_probs=90.2
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCE-------EEEEeCCCcEEEEeCCCCce--eeeecccC
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLREHS 440 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-------las~s~dg~i~iwd~~~~~~--~~~~~~~~ 440 (563)
.+..+.....++-.|+..++.+..+.-|.. |+-+.+.|+.+. -+.|-.|..|.-||++-... +.....|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445555667788889988888888877665 777888887642 23455677788899873322 11111111
Q ss_pred ----CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 441 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 441 ----~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
....|++-..+| +++.||.+|.||+||- .++. ...+.+...+|..|..+.||++|+..+ +..+
T Consensus 427 y~~k~nFsc~aTT~sG----------~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyL 494 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG----------YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYL 494 (644)
T ss_pred cccccccceeeecCCc----------eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEE
Confidence 111222222222 6899999999999997 4433 345677888999999999999987544 4556
Q ss_pred EEEec
Q 008496 516 HIWSL 520 (563)
Q Consensus 516 ~iw~~ 520 (563)
.+-++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66554
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.018 Score=62.18 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=65.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeE--eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCe---
Q 008496 286 GTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT--- 360 (563)
Q Consensus 286 g~~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~--- 360 (563)
+..++.|+..|.+...|..+.+.. .-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+..|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 456888888888888887776542 223346899999999999999999999999999999988888777766553
Q ss_pred EEEecCCCce
Q 008496 361 LDVDWRNNVS 370 (563)
Q Consensus 361 ~~~~~~~~~~ 370 (563)
+.+.|..+..
T Consensus 179 i~v~~t~~nS 188 (1206)
T KOG2079|consen 179 IFVGRTSQNS 188 (1206)
T ss_pred EEEEEeCCCc
Confidence 3344444444
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.0021 Score=57.05 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecC
Q 008496 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 489 (563)
Q Consensus 410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 489 (563)
+.-++.|+.+|.|.+|..+.......+.........+ --|.+. ...+..+++.||.||.|++..++.+.....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~-~Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL-GIPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccccccee-cccccc------ccceeEEeccCCceeeeccccCceeeeecc
Confidence 4557899999999999876322211111111111111 113332 123778899999999999999998888888
Q ss_pred CC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEecCC
Q 008496 490 HR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE 522 (563)
Q Consensus 490 h~-~~i~~l~~spdg~~lasg--s~dg~v~iw~~~~ 522 (563)
|. .++..+..+..+++|+++ |.|..++.|++..
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 87 677777777788888888 8888999998864
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.07 E-value=0.053 Score=57.47 Aligned_cols=182 Identities=13% Similarity=0.183 Sum_probs=95.2
Q ss_pred CceEEEEECCCCCEEEEee------CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEE
Q 008496 216 SEVCACAWSPAGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l 289 (563)
..+...+.||+|+.+|... .|..-.||-...+... . .+ .. ....+.-.|+|+|..|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--------~--~l--t~------g~~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--------V--QV--LE------GHSLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--------e--ee--ec------CCCCCCceECCCCCce
Confidence 3567889999998776654 3555566654321100 0 00 00 1226677899998887
Q ss_pred EEEeCC-CeEEEE-----------EcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEE---EECCCCceeE---
Q 008496 290 ATGSYD-GQARIW-----------STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV---WDVKTEEWKQ--- 351 (563)
Q Consensus 290 ~sg~~d-g~i~vw-----------~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i---wd~~~~~~~~--- 351 (563)
++.... ..+++. ..++..... ...+.|..++|+|+|.+++... ++.|.+ -....+...-
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 776532 223333 332221111 3356799999999999987665 466666 3333343111
Q ss_pred -Eeeec-ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeee-cC--CCcceeEEEECCCCCEEEEEeCCC
Q 008496 352 -QFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AG--HQGEVNCVKWDPTGSLLASCSDDV 420 (563)
Q Consensus 352 -~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~--h~~~i~~~~~~~~~~~las~s~dg 420 (563)
.+... ...+.++.|..+..++....+....+|.+.-....... .+ ....+..|+-+++ . +.....++
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g 560 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARA 560 (591)
T ss_pred EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e-EEEEcCCc
Confidence 11111 22357789998887766554443333433222211111 22 2345666666652 3 33344444
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.05 E-value=0.066 Score=42.35 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=61.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496 411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490 (563)
Q Consensus 411 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 490 (563)
+.|+.||+|..||+|+- ...+.++... ..++++.-...+ .++.+..+|+|-+|+- ...++..+..
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~~----------~F~Y~l~NGTVGvY~~--~~RlWRiKSK 80 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGGG----------RFAYALANGTVGVYDR--SQRLWRIKSK 80 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCCC----------EEEEEecCCEEEEEeC--cceeeeeccC
Confidence 46889999999999974 3556666543 457777665543 4788999999999975 4556666654
Q ss_pred CCCEEEEE-EcCCC---CEEEEEeCCCcEE
Q 008496 491 REPVYSLA-FSPTG---EYLASGSLDKSMH 516 (563)
Q Consensus 491 ~~~i~~l~-~spdg---~~lasgs~dg~v~ 516 (563)
.. +.+++ |..+| .-|++|=.+|.|-
T Consensus 81 ~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 NQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44 45554 44443 3578888888764
No 374
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.97 E-value=0.14 Score=47.64 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=103.0
Q ss_pred EecCCCCceEEEEECCCCC-EEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 210 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 210 ~l~~h~~~V~~~~~sp~~~-~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.+.+-...+..++|+|+.. +++.....+.|...+.. |.. ++...- ....+.-.+++..++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------lr~i~l---~g~~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------LRRIPL---DGFGDYEGITYLGNGRY 78 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------EEEEE----SS-SSEEEEEE-STTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------EEEEeC---CCCCCceeEEEECCCEE
Confidence 3445556799999999855 55556667777666643 221 121111 11356788899888887
Q ss_pred EEEEeCCCeEEEEEcCC--c---e--eE--ee---ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---CceeEEe
Q 008496 289 LATGSYDGQARIWSTNG--D---L--KC--TL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQF 353 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~~--~---~--~~--~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~ 353 (563)
+++--.++.+.+.+... . . .. .+ ..+...+-+|+|.|.++.|+.+-...-..++.+.. .......
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 77766789898887631 1 1 01 11 13455689999999998888887666666666543 1111110
Q ss_pred e----------ecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeec--C-CC------cceeEEEECCCCCEEE
Q 008496 354 E----------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA--G-HQ------GEVNCVKWDPTGSLLA 414 (563)
Q Consensus 354 ~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~-h~------~~i~~~~~~~~~~~la 414 (563)
. ...-+.+.++...+..++.+.....+..++ ..++++..+. . .. ...-.|+|.++|++.+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 0 011122334445566778888888888888 4445544332 1 11 1356899999997765
Q ss_pred EEeCCCcE
Q 008496 415 SCSDDVTA 422 (563)
Q Consensus 415 s~s~dg~i 422 (563)
+. +-+..
T Consensus 238 vs-EpNlf 244 (248)
T PF06977_consen 238 VS-EPNLF 244 (248)
T ss_dssp EE-TTTEE
T ss_pred Ec-CCceE
Confidence 44 44433
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.96 E-value=0.8 Score=49.67 Aligned_cols=320 Identities=14% Similarity=0.192 Sum_probs=165.2
Q ss_pred CceEEEEECCCC---C---EEEEeeCCCcEEEEe-cCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCE
Q 008496 216 SEVCACAWSPAG---S---LLASGSGDSTARIWT-IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (563)
Q Consensus 216 ~~V~~~~~sp~~---~---~latgs~D~~i~iW~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~ 288 (563)
.+|.|+.++|-| + ++|.|..+..+.+-. +++.... ........ .....|....+-.|..+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-----------~~~~l~~~--~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-----------THEQLSGE--IIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-----------eeeccCCC--ccchheeeEEeeccceE
Confidence 679999999852 2 788887665555433 2222110 00111111 12345777788888999
Q ss_pred EEEEeCCCeEEEEEcC---CceeEee--ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEE
Q 008496 289 LATGSYDGQARIWSTN---GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (563)
Q Consensus 289 l~sg~~dg~i~vw~~~---~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 363 (563)
|.++..||.+..+..+ |.+...- .--+.|+.=-.|+..+..-+-+.+|+-..+|--+..-+...+.. ..+..+
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~~ 675 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNHM 675 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhhh
Confidence 9999999999877643 2221111 11234555556666555544555677666775433221111111 011112
Q ss_pred ec-CCC--ceEEEEeCCCeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--------------cEEE
Q 008496 364 DW-RNN--VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------TAKI 424 (563)
Q Consensus 364 ~~-~~~--~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg--------------~i~i 424 (563)
+. .++ ...+.....+.+.+..++.-+ .+++..- ......+++.+...++++.+.-. .+++
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~v 754 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRV 754 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEE
Confidence 21 111 122333444556655554322 2333222 22345666766555555544321 2566
Q ss_pred EeCCCCceeeeec--cc--CCCEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEecC-
Q 008496 425 WNMKQDKYVHDLR--EH--SKEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNG- 489 (563)
Q Consensus 425 wd~~~~~~~~~~~--~~--~~~i~~~~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~- 489 (563)
+|-++-+.++... .. ...|.++.|..+. + .+++.|. ..|.|.++....++.+..+..
T Consensus 755 lD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~------~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 755 LDQNTFEVLSSHEFERNETALSIISCKFTDDP------N--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ecCCceeEEeeccccccceeeeeeeeeecCCC------c--eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 6666554433211 10 1123333454331 1 2344432 135566665544222222211
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-EecCCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 490 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 490 -h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
-.+.++++.- -+|++||. -...|++|+..+++.++. ......+..+.....|+.+|+|..-+++.+.-+|
T Consensus 827 ~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 827 VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 2345555532 26777764 556799999988855543 2334567888889999999999888888887665
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.11 Score=52.10 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=38.0
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 531 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~ 531 (563)
.+......+.+|+.+|++++.|+...=|+|.++|+.++.+++.+++
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 3444455688999999999988877779999999999998888776
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.88 E-value=0.47 Score=45.78 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=137.4
Q ss_pred CeEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCCceeEEeeecccCeEEEe
Q 008496 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (563)
Q Consensus 296 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 364 (563)
+.+.|+|.+. +.+-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-.....+.....+-.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-V 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-e
Confidence 3567777543 33333321 1122345689999888754 2335899999998777766554431111 1
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCccee-------EEEECCCC-CEEEEEeCCCcEEEEeCC-CCceeee
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------CVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVHD 435 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------~~~~~~~~-~~las~s~dg~i~iwd~~-~~~~~~~ 435 (563)
......+..+..+..+++++......+....-....+. |.-.-|.+ .-|.+-+.||++--..+. .++....
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 11233455556666777777765554444433322221 22222332 447778889988887776 3433211
Q ss_pred ecccCCCEEEEEEccCCCCCC-CC----CCcEEEEEEeCCCeEEEEeCCCCeEEE--EecC--------C--CCCEEEEE
Q 008496 436 LREHSKEIYTIRWSPTGSGTN-NP----NQQLILASASFDSTVKLWDVELGKLLY--SLNG--------H--REPVYSLA 498 (563)
Q Consensus 436 ~~~~~~~i~~~~~~p~~~~~~-~~----~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~--------h--~~~i~~l~ 498 (563)
+ +-.|.++..... ++ ... .++--+.+|.|+--|+....... .+.- . .+.-.-++
T Consensus 174 ---~-----t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 174 ---S-----TKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp ---E-----EEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred ---e-----ccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 1 112333221111 10 111 12225688888888876544321 1110 0 01123477
Q ss_pred EcCCCCEEEEE---eCCC-------cEEEEecCCCeeEEEEecCCCEEEEEEcCCCC-EEEE-EECCCeEEEEEee
Q 008496 499 FSPTGEYLASG---SLDK-------SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAA-CFANHTVCVLDFR 562 (563)
Q Consensus 499 ~spdg~~lasg---s~dg-------~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~-~la~-~~~~~~v~v~~~~ 562 (563)
+++....|.+- +.++ .|.++|+.+++.+..+.....+.+++.+.|.+ +|.+ ...++.+.|+|.+
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 87755444331 1222 58999999999999998777788999999988 4433 3457899999864
No 378
>PRK13684 Ycf48-like protein; Provisional
Probab=96.83 E-value=0.59 Score=46.15 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=80.8
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEE-EEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 476 (563)
.+.+.++.+.|++.+++++. .|.+. .++-...........-...++++.+.|++. +++. +..|.+++=
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence 45688899999987776654 44443 232221112111223345678888888764 3333 455766542
Q ss_pred eCCCCeEEEEecC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe----cCCCEEEEEEcCCCCEEE
Q 008496 477 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT----GNGGIFEVCWNKEGDKIA 548 (563)
Q Consensus 477 d~~~~~~~~~~~~----h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~----~~~~i~~l~w~~~g~~la 548 (563)
....|..-..... -...++++.|.|++..+++| .+|.|. .....|+--.... .....+.+.|..+++.+|
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 3333332111111 12357889999988866654 566553 4444444222221 112477888888887777
Q ss_pred EEECCCeEEEE
Q 008496 549 ACFANHTVCVL 559 (563)
Q Consensus 549 ~~~~~~~v~v~ 559 (563)
+| ..|.|..+
T Consensus 319 ~G-~~G~il~~ 328 (334)
T PRK13684 319 LG-QRGVLLRY 328 (334)
T ss_pred EC-CCceEEEe
Confidence 76 55665444
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.81 E-value=0.15 Score=48.19 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=84.1
Q ss_pred ceeEEEECCCCCEEEEEe---CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008496 400 EVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 476 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw 476 (563)
.+.+.+++++++.+|... ....+.++... .....+. ....+..-.|++++. +.+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence 678899999999887665 23344555433 2222221 223566777877753 34444455556666
Q ss_pred e-CCCCeEE-EEecC--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecC---CC---ee---EEEE-ecCCCEEEEE
Q 008496 477 D-VELGKLL-YSLNG--HREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KI---VKTY-TGNGGIFEVC 539 (563)
Q Consensus 477 d-~~~~~~~-~~~~~--h~~~i~~l~~spdg~~lasgs---~dg~v~iw~~~---~~---~~---~~~~-~~~~~i~~l~ 539 (563)
. ...+... ..+.. -...|.++.+||||..+|.-. .++.|.|=-+. .+ .+ +... .....+.+++
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence 3 3333221 12211 112899999999999887654 35777776553 23 11 1111 1134678999
Q ss_pred EcCCCCEEEEEECCCe
Q 008496 540 WNKEGDKIAACFANHT 555 (563)
Q Consensus 540 w~~~g~~la~~~~~~~ 555 (563)
|.+++..++.+...+.
T Consensus 173 W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecCCCEEEEEeCCCCC
Confidence 9999988887755443
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.043 Score=54.83 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=94.3
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-e-EEEEecCC
Q 008496 413 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-K-LLYSLNGH 490 (563)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-~~~~~~~h 490 (563)
|.++..-..++--|+..++.+.+...+.. |.-+.+.|+.........+. +.|-.|..|.=||.+.. + .+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~T--lvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQT--LVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccccccc--EEeecCCceEEecccccCcceeeeeecc
Confidence 34555556777788999999988887766 77778888776443222222 23667888999998732 2 22222333
Q ss_pred C----CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEE-Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 491 R----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 491 ~----~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~-~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
. ....|.+-..+| +||+||.+|.|++||. .+..-++ +++ ...|..+.-+.+|++|.+.+ +..+.+++.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2 234455544454 7899999999999997 4443333 343 45789999999999876654 4467777654
No 381
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.47 Score=43.32 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=125.2
Q ss_pred CEEEEEeCCCeEEEEEcC-CceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-CeEEEe
Q 008496 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVD 364 (563)
Q Consensus 287 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~ 364 (563)
.+++.|+-.+.+..-|.. |.+...-. -...|-+-+.- -|++++.|...|.+.+-+.+++.....|..... .+....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 456666666666655543 22222110 01111111111 467899999999999999999976555443221 111111
Q ss_pred cCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeccc--CC
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK 441 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~ 441 (563)
-.+...+..++-|++.+..|......+...+-..+...+-+..| ++.+.++ ...|.+.--..+.. ..+++-.| .+
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~~~~-~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKNPY-SSTEFWAATRFG 179 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEccCCC-CcceehhhhcCC
Confidence 22345567788899999999888777766554334444455566 4444433 33333322222211 11111111 12
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEE-EEEc-CCCCEEEEEeCCCc-----
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFS-PTGEYLASGSLDKS----- 514 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~s-pdg~~lasgs~dg~----- 514 (563)
+|.+- |.--. + .+.-+.-||.+.-+| ..|+.++... ..+||.. -+-| |..+.|..+..+..
T Consensus 180 PiF~s---plcv~-----~--sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 180 PIFAS---PLCVG-----S--SVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred ccccC---ceecc-----c--eEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEecc
Confidence 22210 10000 0 233345677777777 5666666554 2344432 1222 33344444444432
Q ss_pred ---EEEEecCCCeeEEEEecCCCEEEEEEcC-C---CCEEEEEECCCeEEEEEe
Q 008496 515 ---MHIWSLKEGKIVKTYTGNGGIFEVCWNK-E---GDKIAACFANHTVCVLDF 561 (563)
Q Consensus 515 ---v~iw~~~~~~~~~~~~~~~~i~~l~w~~-~---g~~la~~~~~~~v~v~~~ 561 (563)
-.+|..+.|.....+-... ..++++. . -+.|+.++.||.+.|+-.
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred ccceEEEEecCCcEEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence 2356666665444443211 1122221 1 247778888998888743
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.66 E-value=0.95 Score=46.31 Aligned_cols=225 Identities=16% Similarity=0.161 Sum_probs=115.4
Q ss_pred EEEEeCCCCCEEEEe-eCCC----cEEEEECCCCceeEEeeecccCeEEEecCCC-ceE-EEEeC----------CCeEE
Q 008496 319 FSLKWNKKGDYLLTG-SCDK----TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSF-ATSST----------DNMIY 381 (563)
Q Consensus 319 ~~l~~~~~~~~l~s~-s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~----------d~~i~ 381 (563)
....++|+|++++-+ +..| ++++.|+.+++.+......... ..+.|.++ ..| .+... ...|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 457789999988743 3333 5999999999766532111111 12888766 333 33322 23478
Q ss_pred EEEcCCCcc--eeeecCCCcc--eeEEEECCCCCEEEEEeC---C-CcEEEEeCCCC----ceeeeecccC-CCEEEEEE
Q 008496 382 VCKIGENRP--IKTFAGHQGE--VNCVKWDPTGSLLASCSD---D-VTAKIWNMKQD----KYVHDLREHS-KEIYTIRW 448 (563)
Q Consensus 382 ~~~~~~~~~--~~~~~~h~~~--i~~~~~~~~~~~las~s~---d-g~i~iwd~~~~----~~~~~~~~~~-~~i~~~~~ 448 (563)
.+.+++... ...|.+.... ...+..++|+++|+..+. + ..+.+.++... .....+.... +..+.+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 888887643 3555554433 567889999998765433 2 34666677653 1222222222 22233333
Q ss_pred ccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeE---EEEecCCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEec
Q 008496 449 SPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGEYLAS-GSLDK--SMHIWSL 520 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~spdg~~las-gs~dg--~v~iw~~ 520 (563)
. . +.+++.|- ..++.|.-.++..... ...+..+...+.-..++..+.+|+. .-.++ .|+++++
T Consensus 286 ~-~--------~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 286 H-G--------DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp E-T--------TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred c-C--------CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 2 1 12344442 2234555556655431 2234445443333333445555554 33443 6889999
Q ss_pred CCCeeEEEEe--cCCCEEEEEEcCCCCEEEEEECC
Q 008496 521 KEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 521 ~~~~~~~~~~--~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
..+....... ..+.|..+..+++++.+...+++
T Consensus 357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 357 DDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp T-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred CCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 8444444433 34456777777888877665443
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.0068 Score=65.23 Aligned_cols=93 Identities=23% Similarity=0.287 Sum_probs=71.6
Q ss_pred EEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEecC----CCEEE
Q 008496 463 ILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----GGIFE 537 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~~----~~i~~ 537 (563)
.++.|+.-|.|-..|....-. ...-..-.+||++++|+.||+.++.|=.+|.|.+||+.++++++.+..+ .++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 467788888888888764211 1111223578999999999999999999999999999999988887643 45778
Q ss_pred EEEcCCCCEEEEEECCCe
Q 008496 538 VCWNKEGDKIAACFANHT 555 (563)
Q Consensus 538 l~w~~~g~~la~~~~~~~ 555 (563)
+.|..++..+.++...|.
T Consensus 181 v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEeCCCcEEEEccCCCc
Confidence 889888887777777765
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.45 E-value=0.011 Score=38.94 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 491 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 491 ~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
...|..++|+|...+||.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.39 E-value=1 Score=43.41 Aligned_cols=266 Identities=15% Similarity=0.230 Sum_probs=120.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe---eccC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 347 (563)
...+..|.|..+..-+++|.. |.| +-..+|...-. .... .-...++.|..+ ..+++| ..+.+ +.....+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~-g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~l-l~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAY-GTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLL-LHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETT-TEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEE-EEESSTT
T ss_pred CCceEEEEEecCCEEEEEecC-CEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceE-EEecCCC
Confidence 457889999866666666654 443 33344432111 1111 112556777543 344444 44433 3333333
Q ss_pred -ceeEEeee--cccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 348 -EWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 348 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
.+...... -.+....+...++......+..+.|+.-.-....=......-.+.+..+.-+++|+++++++.-....-
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence 23322110 111222222222333333444455544322211111122334467888888999999988877666677
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEE----ecCCCCCEEEEEE
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYS----LNGHREPVYSLAF 499 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~----~~~h~~~i~~l~~ 499 (563)
|+.-.......-+.-...|.++.|.|++. +++ ....|.|++=+. .....-.. +..-.-.+..++|
T Consensus 171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~--------lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN--------LWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EEEEEE-TTS---------EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ecCCCccceEEccCccceehhceecCCCC--------EEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 88654333333344567899999999864 333 337788888772 22221111 1112234899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCeeEEEEec----CCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496 500 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVC 557 (563)
Q Consensus 500 spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~----~~~i~~l~w~~~g~~la~~~~~~~v~ 557 (563)
.+++...|+|+. |.+ +.....|+--+.... ...++.+.|..+.+-+|.| .+|.+-
T Consensus 241 ~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll 299 (302)
T PF14870_consen 241 RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL 299 (302)
T ss_dssp SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence 999888887664 433 445555554333322 2347888988776666666 666553
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.35 E-value=0.014 Score=38.46 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCce
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~ 307 (563)
...|.+++|+|...+||.|+.+|.|.++..+++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3569999999999999999999999999987653
No 387
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.32 E-value=0.64 Score=49.44 Aligned_cols=222 Identities=15% Similarity=0.258 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCceeEeecc--CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCCcee
Q 008496 285 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK 350 (563)
Q Consensus 285 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~ 350 (563)
.+.+++.||.++ .+..+|........+.. +...-.+++.. ++...++|+.| .++..||..+.+|.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456677777763 56677765442222211 22223344433 34666788888 36788999998887
Q ss_pred EEeeeccc-CeEEEecCCCceEEEEeCCCe-----EEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC--
Q 008496 351 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 420 (563)
Q Consensus 351 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg-- 420 (563)
..-..... .-..+.-.++..++.++.||. +-.||..+++ .+..+.........+. -+|++.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence 63332221 123344456677788887764 4445544432 1111111111122222 2688888888665
Q ss_pred ----cEEEEeCCCCceee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-----EEEEeCCCCeE--EEEe
Q 008496 421 ----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-----VKLWDVELGKL--LYSL 487 (563)
Q Consensus 421 ----~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~--~~~~ 487 (563)
++..||..++.... .+...-... .++.- + ..+.+.|+.|+. |..+|..+.+- +..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~---------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-N---------GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccc-eEEEE-C---------CEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 35677776655432 111110000 11111 1 135677777763 67788765442 2222
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCC
Q 008496 488 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE 522 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs~dg-----~v~iw~~~~ 522 (563)
......+-.+.+ +++..|+|+.|| +|..||..+
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 222222222222 567778888776 355555443
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.27 E-value=0.18 Score=45.17 Aligned_cols=137 Identities=12% Similarity=0.213 Sum_probs=86.9
Q ss_pred EEECCCCCEEEEEeCC---------CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEE--CCCC
Q 008496 280 LDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD--VKTE 347 (563)
Q Consensus 280 l~~s~~g~~l~sg~~d---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd--~~~~ 347 (563)
-..+|+|++++-.-.| |.++.|-..++....... -+--.+|+|+.+.+.+. .-+.+-+|.-|| ..++
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-ccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 3457899885433222 456666555444333221 12235688887776654 445566777777 5555
Q ss_pred ceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeC
Q 008496 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~ 427 (563)
...+ .-.+++++..+|...+. ...++++.+|++.+++-+-++|...|.
T Consensus 193 ~~sn---------------------------r~~i~dlrk~~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 193 DLSN---------------------------RKVIFDLRKSQPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred cccC---------------------------cceeEEeccCCCcCCCC-----CCcceEccCCcEEEEEecCcEEEEECC
Confidence 4221 11245555444332221 223455678999999999999999999
Q ss_pred CCCceeeeecccCCCEEEEEEc
Q 008496 428 KQDKYVHDLREHSKEIYTIRWS 449 (563)
Q Consensus 428 ~~~~~~~~~~~~~~~i~~~~~~ 449 (563)
.+++.+.+++-....|++++|-
T Consensus 241 ~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEec
Confidence 9999999999889999999985
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.14 E-value=0.49 Score=50.33 Aligned_cols=185 Identities=4% Similarity=0.073 Sum_probs=89.1
Q ss_pred CCCEEEEeeCC------CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCCC-----eEEEEEcCCCc--ce
Q 008496 326 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENR--PI 391 (563)
Q Consensus 326 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~--~~ 391 (563)
++...+.|+.+ .++..||+.+..|...-..... .-..+.-.++..++.++.++ .+..|+..++. .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 44555666643 3477889888877543222111 11122333555666666543 35667665432 11
Q ss_pred eeecCCCcceeEEEECCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeeeecccCCCEE-EEE
Q 008496 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYVHDLREHSKEIY-TIR 447 (563)
Q Consensus 392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~i~-~~~ 447 (563)
..+.........+.. ++++.+.|+.++ .+..||..+.+....-........ +++
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 111111111112222 577778887653 355677665543211000000000 000
Q ss_pred EccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCC-C--eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 008496 448 WSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SMH 516 (563)
Q Consensus 448 ~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~-~--~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg--~v~ 516 (563)
.-++. +.+.|+.+ ..+..||..+ . ..+..+.........+++ +|+..++||.++ .+.
T Consensus 461 ---------~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 461 ---------SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred ---------EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence 00122 33445543 2467788876 3 333334333333333444 788899999888 677
Q ss_pred EEecCCCe
Q 008496 517 IWSLKEGK 524 (563)
Q Consensus 517 iw~~~~~~ 524 (563)
.||..+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77776654
No 390
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.10 E-value=1.4 Score=42.18 Aligned_cols=225 Identities=14% Similarity=0.214 Sum_probs=113.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 008496 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (563)
Q Consensus 226 ~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~ 305 (563)
.++.|+.|..+| +.++++..... +.. . .....|+.+..-++-+.|++-+ |+.+++++.+.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~~~--i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-------PTR--I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-------cee--E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 467899998888 88888722110 000 0 0122388888888766665544 59999998643
Q ss_pred ceeEe---------------eccCCCCEEEEE--eCCCCCEEEEeeCCCcEEEEECCCC-----ceeEEeeecccCeEEE
Q 008496 306 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV 363 (563)
Q Consensus 306 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~ 363 (563)
-.... .......+...+ -...+...+.+...++|.+|..... ...+.+... ..+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEE
Confidence 11111 111122333333 1234455566666778888876542 233333332 566778
Q ss_pred ecCCCceEEEEeCCCeEEEEEcCCCcceeeecCC------------CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 008496 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 364 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~ 431 (563)
.|.++. ++.+. .....+.++.+..+...+... ..++..+..+ ++.+|++ .++ .-.+-|. .|.
T Consensus 145 ~~~~~~-i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~-~g~fv~~-~G~ 218 (275)
T PF00780_consen 145 AFLGNK-ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN-IGVFVNK-NGE 218 (275)
T ss_pred EEeCCE-EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc-eEEEEcC-CCC
Confidence 887444 33333 334566677654443332111 1233344443 3455543 322 2222232 222
Q ss_pred eee--eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q 008496 432 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 490 (563)
Q Consensus 432 ~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 490 (563)
+.+ .+.-. ....++.+.. + +|+..+ ++.|.||++.+++++.++...
T Consensus 219 ~~r~~~i~W~-~~p~~~~~~~----------p-yli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 219 PSRKSTIQWS-SAPQSVAYSS----------P-YLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cCcccEEEcC-CchhEEEEEC----------C-EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 221 11111 1222333321 1 444433 466999999999998887643
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.06 E-value=0.27 Score=51.78 Aligned_cols=92 Identities=20% Similarity=0.400 Sum_probs=64.6
Q ss_pred EeCCCeEEEEeCCCCeEEEEec-CCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCC---------CeeEEEEe----
Q 008496 467 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT---- 530 (563)
Q Consensus 467 ~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~--spdg~~lasgs~dg~v~iw~~~~---------~~~~~~~~---- 530 (563)
-+....+.|||.+.+...++-. ...++|.++.| .|||+.+.+.|....|.+|.-.. ...++.+.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence 3344579999999888655433 34678999988 47899999999999999996531 12333332
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 531 GNGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 531 ~~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
....|.+.+|-++|..++++ +| .+.|+|
T Consensus 127 T~h~Igds~Wl~~G~LvV~s-GN-qlfv~d 154 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGS-GN-QLFVFD 154 (631)
T ss_pred CCCCccceeEecCCeEEEEe-CC-EEEEEC
Confidence 13468899999999766555 44 577764
No 392
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.00 E-value=1.8 Score=42.57 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=84.3
Q ss_pred CCEEEEEeC---------C-CeEEEEEcCCc------eeE-eeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 008496 286 GTLLATGSY---------D-GQARIWSTNGD------LKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (563)
Q Consensus 286 g~~l~sg~~---------d-g~i~vw~~~~~------~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 348 (563)
-.+|++|+. . |.+.+++.... +.. .-....++|++++-- + .+|+.+ ..+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-ecCEEEEEEccCcc
Confidence 467777754 2 88999987652 221 123457899999755 3 344444 35899999998877
Q ss_pred -eeEEeeecc-cCeEEEecCCCceEEEEeCCCeEEEEEcCC-CcceeeecC--CCcceeEEEECCCCCEEEEEeCCCcEE
Q 008496 349 -WKQQFEFHS-GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAK 423 (563)
Q Consensus 349 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~--h~~~i~~~~~~~~~~~las~s~dg~i~ 423 (563)
+...-..+. ..+.++....+ .++.+.....+.++.... ...+..+.. ....++++.+-++++.++.+..+|.+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 555443322 34556665555 555666666666665443 222222221 234577888876667899999999999
Q ss_pred EEeCC
Q 008496 424 IWNMK 428 (563)
Q Consensus 424 iwd~~ 428 (563)
++...
T Consensus 198 ~l~~~ 202 (321)
T PF03178_consen 198 VLRYN 202 (321)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 98765
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.96 E-value=2.3 Score=46.78 Aligned_cols=159 Identities=14% Similarity=0.260 Sum_probs=87.6
Q ss_pred ceEEEEeCCCeEEEEEcCCCcceeeecCCCccee-------------EEEECC--CCCEEEEEeC----------CCcEE
Q 008496 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAK 423 (563)
Q Consensus 369 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------------~~~~~~--~~~~las~s~----------dg~i~ 423 (563)
..+...+.|+.++-.|..+++.+..|. ..+.|. .+.-.| .+..++.|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 356667788999888988888776653 222211 011111 1234555532 68899
Q ss_pred EEeCCCCceeeeeccc---------CCCEEE-----------------EEEccCCCCCCCC-CCcEEEEEEeCCCeEEEE
Q 008496 424 IWNMKQDKYVHDLREH---------SKEIYT-----------------IRWSPTGSGTNNP-NQQLILASASFDSTVKLW 476 (563)
Q Consensus 424 iwd~~~~~~~~~~~~~---------~~~i~~-----------------~~~~p~~~~~~~~-~~~~~l~s~s~dg~i~iw 476 (563)
-+|.++++.+-.+..- .+..+. +.+-|.|...... .........-..++|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999999887654311 011111 1111111110000 000000011234667788
Q ss_pred eCCCCeEEEEecC--CC--------CCEEEEEEcC-CCC---EEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 477 DVELGKLLYSLNG--HR--------EPVYSLAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 477 d~~~~~~~~~~~~--h~--------~~i~~l~~sp-dg~---~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
|+++|+.+..++. |. .++. +.+.- +|+ .++.++.+|.++++|.++|+.+...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L-~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSL-VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceE-EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 9999999887754 21 1221 22322 663 7889999999999999999987654
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.0061 Score=64.22 Aligned_cols=124 Identities=12% Similarity=0.168 Sum_probs=69.7
Q ss_pred eEecCCCCceEEEEECC-CCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECC---
Q 008496 209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--- 284 (563)
Q Consensus 209 ~~l~~h~~~V~~~~~sp-~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--- 284 (563)
.+++|-.++|-.++|-. +...++ -.-|...+|++.- ..+..+ ..+.+ +.. .+...++.-+.|.|
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq----~~l~v-~~~---~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQ----PQLEV-TPI---TPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccc----cceEE-eec---CcCCCCcceeeeccccc
Confidence 34567777777777743 112222 2235678898752 111111 11111 111 11233445566655
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEE-----------eCCCCCEEEEeeCCCcEEEEEC
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV 344 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~v~iwd~ 344 (563)
+.-++..+-.++.+++...+......+.+|...++.++ .+|||+.|+.++.||.++.|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55667777778899887766554455566766555443 4778888888888887777754
No 395
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.84 E-value=0.61 Score=46.80 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=74.3
Q ss_pred ceeEEEECCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--eeeecccCCCEEEEEEccCCCCCCCCCCcEE
Q 008496 400 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 463 (563)
....|+|.++|+++++.. ..+ .|.+++-.. ++. ...+.........+++.+++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence 345788999999877653 223 566665322 221 12222222234566666554 3
Q ss_pred EEEEeCCCeEEEEeCCC-------CeEEEE-ecC----CCCCEEEEEEcCCCCEEEEEeCC-------------------
Q 008496 464 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD------------------- 512 (563)
Q Consensus 464 l~s~s~dg~i~iwd~~~-------~~~~~~-~~~----h~~~i~~l~~spdg~~lasgs~d------------------- 512 (563)
+++ +.....++.|... .+.+.. +.. +......++|.|||.+.++-+..
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 333 3333333445431 122222 222 12346789999999877754421
Q ss_pred CcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEECC
Q 008496 513 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 553 (563)
Q Consensus 513 g~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~ 553 (563)
|.|.-++..++++...-.+......++|+++|+.+++-..+
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34555555544432221222335789999999887664333
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.62 E-value=0.41 Score=48.97 Aligned_cols=148 Identities=18% Similarity=0.354 Sum_probs=89.4
Q ss_pred cceeEEEECCCCCEEE-EEe--CCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496 399 GEVNCVKWDPTGSLLA-SCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475 (563)
Q Consensus 399 ~~i~~~~~~~~~~~la-s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i 475 (563)
.++..++|. ||+.++ |.- .+|.+++=|. +.+..| ..|+.+.|.|.+.... . .|++......|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence 367789997 666543 321 2444443321 122222 3588999999764321 1 3455667889999
Q ss_pred EeCC-----CCeEEEEecCC---CCCE--EEEEEcCCCCEEEEEeCCCcEEEEecCC--CeeEEEEecCCCEEEEEEcCC
Q 008496 476 WDVE-----LGKLLYSLNGH---REPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE 543 (563)
Q Consensus 476 wd~~-----~~~~~~~~~~h---~~~i--~~l~~spdg~~lasgs~dg~v~iw~~~~--~~~~~~~~~~~~i~~l~w~~~ 543 (563)
|-+. .++.+.+...+ .-|| ....|+|....|+.-.....-.+++++. .++.......+-|.+.||.+|
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 9864 23333332211 1222 3468999999988766554434666643 234445566778999999999
Q ss_pred CCEEEEEECCCeE--EEEE
Q 008496 544 GDKIAACFANHTV--CVLD 560 (563)
Q Consensus 544 g~~la~~~~~~~v--~v~~ 560 (563)
|++|+++-++ .+ .|||
T Consensus 167 G~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred CCEEEEEeCC-eEEEEEec
Confidence 9999988554 44 5554
No 397
>PHA02713 hypothetical protein; Provisional
Probab=95.37 E-value=1.5 Score=46.78 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=45.8
Q ss_pred cEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC------CeEEEEEcCCCc--ceeeecCCCcceeEEEECC
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP 408 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~ 408 (563)
.+..||+.+.+|...-...... -..+...++..++.++.+ ..+..|+...+. .+..+.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence 5677888777765422211110 112233355566666643 235666665442 11111111111222222
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCce
Q 008496 409 TGSLLASCSDDV-----TAKIWNMKQDKY 432 (563)
Q Consensus 409 ~~~~las~s~dg-----~i~iwd~~~~~~ 432 (563)
+|++.+.|+.++ ++..||..+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 578888888764 377888776543
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.05 E-value=0.076 Score=47.45 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeE-EeeecccCeEEEec--CCCceEEEEeCCCeEEEEEcCCCcceeeecCCC-ccee
Q 008496 327 GDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN 402 (563)
Q Consensus 327 ~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~ 402 (563)
+..++.|+.||.|.+|+......+. .+.....++...-. .......+++.++.|+.|.+...+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3568899999999999876221111 11111122222212 222355677899999999998888777666676 4555
Q ss_pred EEEECCCCCEEEEE--eCCCcEEEEeCCC
Q 008496 403 CVKWDPTGSLLASC--SDDVTAKIWNMKQ 429 (563)
Q Consensus 403 ~~~~~~~~~~las~--s~dg~i~iwd~~~ 429 (563)
.+..+..++++++. |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555566677776 7777777777653
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.94 E-value=1.5 Score=45.14 Aligned_cols=147 Identities=14% Similarity=0.292 Sum_probs=75.0
Q ss_pred CeEEEecCCCceEEEEe---CCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC----CEEEEEeCCCcEEEEeCC---
Q 008496 359 PTLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG----SLLASCSDDVTAKIWNMK--- 428 (563)
Q Consensus 359 ~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~~las~s~dg~i~iwd~~--- 428 (563)
|+..+.|.+...++... -+|.+. .+..+.+..| ..|..+.|.|-+ .-+........|.||.+.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~k---fGds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPK---FGDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccc---cCCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 56677787665544321 111111 1222233333 358889999853 234444556789999874
Q ss_pred --CCceeeeecccC-C--C--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeEEEEecCCCCCEEEEEE
Q 008496 429 --QDKYVHDLREHS-K--E--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 429 --~~~~~~~~~~~~-~--~--i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~i~~l~~ 499 (563)
+.+.+..-..+- . + -..+.|+|... +|+.-.....=-+++++ +.+....++ -.+-|.|.+|
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---------iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACW 163 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---------ILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACW 163 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCc---------eEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEe
Confidence 222221111000 0 0 12345666432 33333333333345554 233444454 3567999999
Q ss_pred cCCCCEEEEEeCC-CcEEEEecCC
Q 008496 500 SPTGEYLASGSLD-KSMHIWSLKE 522 (563)
Q Consensus 500 spdg~~lasgs~d-g~v~iw~~~~ 522 (563)
.+||+.|+.+-.. =.-+|||-..
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCch
Confidence 9999888765433 3467888543
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.79 E-value=0.02 Score=60.55 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=63.6
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCC-----CCceeeeecccCC-CEEEEEEccCCCCC-CCCCCcEEEEEEeCCCeEEEEeC
Q 008496 406 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSGT-NNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 406 ~~~~~~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~-~i~~~~~~p~~~~~-~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
.+|||+.||+++.||.++.|.+. ..++.+..+.|.+ +-.|..+....... ..+.-.+.+-+...+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999999988753 3345566666763 32222222211110 11112233444455667999987
Q ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEecC
Q 008496 479 ELGKLLYSLNGHREPVYSLAFSPTGEY------------LASGSLDKSMHIWSLK 521 (563)
Q Consensus 479 ~~~~~~~~~~~h~~~i~~l~~spdg~~------------lasgs~dg~v~iw~~~ 521 (563)
...+|+..+ .-..|..+. -+||.. +++-+.++.|.+|.-+
T Consensus 323 a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 776766221 223344444 333421 3445667888888643
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.73 E-value=3.7 Score=38.39 Aligned_cols=179 Identities=14% Similarity=0.139 Sum_probs=105.4
Q ss_pred EEEEEeCCCCCEEEEeeCCC--cEEEEECCCCceeEEeeecccCe-EEEecCCCceEEEEeCCCeEEEEEcCCCcceeee
Q 008496 318 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 394 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 394 (563)
.-++.|..+|..+-+.+.-| .|+.+|+.+++..+.......-. -.+...++..+...=.++..++||..+-+++.++
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 34677777787777877766 68999999998776654432110 1122223444444456677888998888777777
Q ss_pred cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeccc--C---CCEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 469 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~~~~~~~~~~l~s~s~ 469 (563)
. ..++=..++. +++.|+.......+.++|..+.+....+... . ..+.-+.|. +| .+.|-.=.
T Consensus 127 ~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~ 193 (264)
T PF05096_consen 127 P-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ 193 (264)
T ss_dssp E--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred e-cCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence 5 2345556663 5555655555668999998877665554322 1 233445554 22 24555555
Q ss_pred CCeEEEEeCCCCeEEEEecC------------C---CCCEEEEEEcCCCC-EEEEE
Q 008496 470 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGE-YLASG 509 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~~~------------h---~~~i~~l~~spdg~-~lasg 509 (563)
...|..-|..+|+++..+.- + ..-.+.|||.|... +++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66777789999988776521 1 23468899988765 45555
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.65 E-value=2.5 Score=45.03 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCEEEEeeCC------CcEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCC-C-----eEEEEEcCCCc--ce
Q 008496 327 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENR--PI 391 (563)
Q Consensus 327 ~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~--~~ 391 (563)
+..++.|+.+ .++..+|+.++.|......... ....+...++..+++++.+ + .+..||...++ .+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 3445555555 4678889888877654333221 2334445566778888887 3 45566665443 11
Q ss_pred eeecCCCcceeEEEECCCCCEEEEEeCCCc-----EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEE
Q 008496 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 466 (563)
Q Consensus 392 ~~~~~h~~~i~~~~~~~~~~~las~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s 466 (563)
..+........... -+|.+.|.|+.||. +..||..+.+.-..-. .........-..- + ..+.+.
T Consensus 365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~-------~-g~iYi~ 433 (571)
T KOG4441|consen 365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVL-------G-GKLYII 433 (571)
T ss_pred CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEE-------C-CEEEEE
Confidence 11111111111122 26888899999874 6678876654321110 0001111111110 1 124556
Q ss_pred EeCCC------eEEEEeCCCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEecCCCe
Q 008496 467 ASFDS------TVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-----MHIWSLKEGK 524 (563)
Q Consensus 467 ~s~dg------~i~iwd~~~~~~--~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-----v~iw~~~~~~ 524 (563)
|+.++ ++..||..+++- +..+..-+....... -++..+|.||.|+. |..||..+.+
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 66544 466777765542 222221111122222 26778888888763 7778877654
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.43 Score=52.38 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCEEEEEeCCCCCEEEE--eeCCCcEEEEECCCCceeE-----Eeeec------ccCeEEEecCCC--ceEEEEeCCCeE
Q 008496 316 GPIFSLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQ-----QFEFH------SGPTLDVDWRNN--VSFATSSTDNMI 380 (563)
Q Consensus 316 ~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~~~~~~~-----~~~~~------~~~~~~~~~~~~--~~~~~~~~d~~i 380 (563)
-++..+..+++++..++ .+.+-.|..||+++..... .+..+ ..-..++.|... ..++.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35555666677655433 3334478899987543211 11111 112355667654 356778888888
Q ss_pred EEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecc-cCCCEEEEEEccC
Q 008496 381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLRE-HSKEIYTIRWSPT 451 (563)
Q Consensus 381 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~-~~~~i~~~~~~p~ 451 (563)
.+..+....+...--.-....+|++|+|.|+.++.|-..|++.-|-..-. +.+..... ....|.+|+|...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 88777554332211123456889999999999999999999988864322 11111111 1356888888653
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.21 E-value=5.6 Score=38.35 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
.-.+.+..+.-+++|. ++++++.-....-||--.. =..+.. .-...|.++.|+|++...+++ ..|.|+
T Consensus 142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEE
Confidence 3446677777778775 5666654444556765321 122222 235689999999998876654 778887
Q ss_pred EEecCCCeeEEEEe--------cCCCEEEEEEcCCCCEEEEEECCCeEE
Q 008496 517 IWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVC 557 (563)
Q Consensus 517 iw~~~~~~~~~~~~--------~~~~i~~l~w~~~g~~la~~~~~~~v~ 557 (563)
+=+... -..++. ..-++.+++|.+++...|+|. +|.+.
T Consensus 211 ~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 211 FSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred EccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 766211 122221 123489999999988887774 44443
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.02 E-value=1.2 Score=48.52 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=52.2
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 396 (563)
.|..|..||+|.+|+..|..+.+.+.=.+.......+......+.+ +.+.++.. .....
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~C------------------rt~~v~~~---~~~~~ 144 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINC------------------RTVPVDER---FFTSN 144 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeE------------------EEEEechh---hccCC
Confidence 5788889999999888877655444322221101111111111111 11111110 00123
Q ss_pred CCcceeEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 008496 397 HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 397 h~~~i~~~~~~~~---~~~las~s~dg~i~iwd~~~ 429 (563)
+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3457889999997 47888999999999999864
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.96 E-value=5.4 Score=37.28 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=94.8
Q ss_pred EEEEECCCCCEEEEeeCC--CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008496 219 CACAWSPAGSLLASGSGD--STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (563)
Q Consensus 219 ~~~~~sp~~~~latgs~D--~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg 296 (563)
..+.|..+|.++-+.|.- +.++.+|+.+++.... ..+....-. ..++-+ ++++..-.-.++
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------~~l~~~~Fg--EGit~~----~d~l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-----------VPLPPRYFG--EGITIL----GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-----------EE-TTT--E--EEEEEE----TTEEEEEESSSS
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------EECCccccc--eeEEEE----CCEEEEEEecCC
Confidence 357787788888887754 4899999987653211 011100000 011111 223333345578
Q ss_pred eEEEEEcCC-ceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeeccc-----CeEEEecCCCce
Q 008496 297 QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVS 370 (563)
Q Consensus 297 ~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 370 (563)
.+.+||.+. +...++. ..+.=++|+ .+++.|+.......+.++|+.+.+....+..... ....+.|.+...
T Consensus 111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~I 187 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKI 187 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEE
T ss_pred eEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEE
Confidence 889999864 3333442 334557887 4567777777777899999988776665543321 234455555555
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeec-----------C----CCcceeEEEECCCCCE-EEEE
Q 008496 371 FATSSTDNMIYVCKIGENRPIKTFA-----------G----HQGEVNCVKWDPTGSL-LASC 416 (563)
Q Consensus 371 ~~~~~~d~~i~~~~~~~~~~~~~~~-----------~----h~~~i~~~~~~~~~~~-las~ 416 (563)
+|-.=....|...|..+++.+..+. . ...-.+.|+|+|.... ++||
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5544444555555655555443321 0 1345789999887655 4555
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=5.7 Score=37.18 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=60.1
Q ss_pred EEEECCCC-CEEEEeeCCC-cEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008496 220 ACAWSPAG-SLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-- 295 (563)
Q Consensus 220 ~~~~sp~~-~~latgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-- 295 (563)
.++|+|.. .-++.+-.=| ...++|.......... ....-+|+-++ =.|||||.+|...-.|
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-----~s~~~RHfyGH----------Gvfs~dG~~LYATEndfd 136 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-----VSQEGRHFYGH----------GVFSPDGRLLYATENDFD 136 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-----ecccCceeecc----------cccCCCCcEEEeecCCCC
Confidence 57788863 4455554444 4667776654321000 00011222222 1589999998876444
Q ss_pred ---CeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEee
Q 008496 296 ---GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS 334 (563)
Q Consensus 296 ---g~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s 334 (563)
|.|-|||..... ...+..|.-.-..+.|.+||..++.+.
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 789999976432 335677776667889999999887764
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=2.3 Score=39.69 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=72.9
Q ss_pred EEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCC
Q 008496 403 CVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVEL 480 (563)
Q Consensus 403 ~~~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~ 480 (563)
+....+||++ +++.+.+|.+.. .+. -......+.++|... ..++-+-.-|+ ..++|...
T Consensus 40 saf~~~dgs~g~a~~~eaGk~v~-~~~----------lpaR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 40 SAFDARDGSFGAATLSEAGKIVF-ATA----------LPARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred eeeeccCCceeEEEEccCCceee-eee----------cccccCCeecCCCCc--------ceEEEEecCCceEEEECCCC
Confidence 3444567765 556666766531 110 112223345555432 12333333333 45677776
Q ss_pred CeEEEEecCCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC-eeEEEEecCC-CEEEEEEcCCCCEEEEE
Q 008496 481 GKLLYSLNGHREP--VYSLAFSPTGEYLASGSLD-----KSMHIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 481 ~~~~~~~~~h~~~--i~~l~~spdg~~lasgs~d-----g~v~iw~~~~~-~~~~~~~~~~-~i~~l~w~~~g~~la~~ 550 (563)
.+.+.++...+.. --.-+|||||.+|...-.| |.|-|||.+.+ ..+..|...+ +.-++.|.+||..|+++
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 6555444321111 1123699999998754332 68999998753 3455565543 45789999999999987
No 409
>PHA03098 kelch-like protein; Provisional
Probab=93.74 E-value=2.5 Score=44.88 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=42.6
Q ss_pred cEEEEECCCCceeEEeeeccc-CeEEEecCCCceEEEEeCCC-----eEEEEEcCCCcc--eeeecCCCcceeEEEECCC
Q 008496 338 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT 409 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~ 409 (563)
.+..||+.+.+|...-..... ....+...++..++.++.++ .+..|+..+.+= +..+.........+. -+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--EC
Confidence 467788888777543221111 01122233455566666442 355565544321 111110111111122 25
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCce
Q 008496 410 GSLLASCSDD------VTAKIWNMKQDKY 432 (563)
Q Consensus 410 ~~~las~s~d------g~i~iwd~~~~~~ 432 (563)
+++.+.|+.+ ..+..||..+.+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 6777777732 3577888776544
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.74 E-value=0.24 Score=31.58 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCC
Q 008496 492 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 492 ~~i~~l~~spdg---~~lasgs~dg~v~iw~~~~ 522 (563)
+.|.++.|||.. .+||.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 5889888889999999985
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=1.6 Score=43.34 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=84.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCC---ceeEee-ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE----Eeeec
Q 008496 285 EGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEFH 356 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~~ 356 (563)
|.+..+.+...|.+.=|-+.| .....+ ...+++|.+++|++|.+.|+.--.|++|.+.+....+... .....
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 444444555566666666443 222222 2356799999999999999999999999999874333222 22233
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcC-CCcceeeecCCCcceeEEEECCCCCEEEEEe
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~~~~las~s 417 (563)
...+..+.|.++..+|...+.|. -+|... ..+.++..+.|.-.|+=-.|.++.+.+.-|+
T Consensus 112 ~~~IlGF~W~~s~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 112 NANILGFCWTSSTEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred cceeEEEEEecCeeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 44588899998887777666654 233322 2334455566777788788888877654443
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=0.36 Score=52.93 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=89.8
Q ss_pred ceEEEEECCCCCE--EEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCC-CEEEEEe
Q 008496 217 EVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGS 293 (563)
Q Consensus 217 ~V~~~~~sp~~~~--latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~ 293 (563)
.|..+..++|++. ++..+.+-.|..+|+..-......+..++.. + ........-+.++.|+|.- ...+...
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~----s--~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN----S--ATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc----c--cchhccccccccccccCCccchhhhhc
Confidence 3455556677653 3344455578889986422111111111100 0 0011223446788999853 3456678
Q ss_pred CCCeEEEEEcCCceeEe-eccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee---e-cccCeEEEecCCC
Q 008496 294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---F-HSGPTLDVDWRNN 368 (563)
Q Consensus 294 ~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~ 368 (563)
.|+.|++..+....... --..+..+++++|+|.|++++.|-..|++..|-..-. .+..+. . ....+.++.|...
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecc
Confidence 88999988765322211 1134567899999999999999999999999975432 222111 1 1346889999988
Q ss_pred ceEEEEe
Q 008496 369 VSFATSS 375 (563)
Q Consensus 369 ~~~~~~~ 375 (563)
..|+..-
T Consensus 255 ~eflvvy 261 (1405)
T KOG3630|consen 255 QEFLVVY 261 (1405)
T ss_pred eeEEEEe
Confidence 7776543
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.47 E-value=8.5 Score=37.94 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=34.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCceeE---ee----ccCCCCEEEEEeCCC
Q 008496 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC---TL----SKHKGPIFSLKWNKK 326 (563)
Q Consensus 277 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~---~~----~~h~~~V~~l~~~~~ 326 (563)
-+.|+|.|+|+++++ ...|.|++++.++.... .+ .........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 578999999988765 56999999996665422 12 233456799999995
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.27 E-value=9.2 Score=37.71 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEE---E-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008496 463 ILASASFDSTVKLWDVELGKLLY---S-LNGHREPVYSLAFSPTGEYLASGSLDKSMH 516 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~~~---~-~~~h~~~i~~l~~spdg~~lasgs~dg~v~ 516 (563)
++++.-..+.|....+..+..+. . +......+..+++.|||.++++-+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45555445677777766443322 2 233445799999999999988888888764
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.27 E-value=7.4 Score=36.65 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=86.1
Q ss_pred CCeEEEEECCCCCEEEEEe---CCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE-CCCCcee
Q 008496 275 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK 350 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~---~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~ 350 (563)
..+...+++++|+.++... ....++++...+.....+.+ ..++.-.|++++...+....+...+++. ...+...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688899999999877665 33466666665555444433 2667778999876666655555555553 2222111
Q ss_pred EEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEe---CCCcEEEEeC
Q 008496 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM 427 (563)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s---~dg~i~iwd~ 427 (563)
. ..++| ..-.+.|..++++|||..+|.-. .++.|.+=-+
T Consensus 102 ~---------~~v~~-----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 P---------VEVDW-----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred e---------EEecc-----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 0 00010 00111789999999999877655 2455655432
Q ss_pred C---CC--c----eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008496 428 K---QD--K----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 475 (563)
Q Consensus 428 ~---~~--~----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~i 475 (563)
. .+ . .+.........+..+.|.+++. ++++....++.+..
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~--------L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST--------LVVLGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCE--------EEEEeCCCCCceeE
Confidence 1 22 1 1111122345788999998764 34444444543433
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.09 E-value=3.3 Score=43.94 Aligned_cols=110 Identities=14% Similarity=0.256 Sum_probs=69.3
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec-ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-
Q 008496 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE- 479 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~- 479 (563)
.-+.-+.-++..+.-+...++.|||.+.+....+-. ...+.|..+.|...+. .+.+| +.++...|.++.-.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiL-aVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSIL-AVGFPHHVLLYTQLR 105 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEE-EEEcCcEEEEEEccc
Confidence 344445555555555556679999999887543322 4567899999986543 33444 55677888888431
Q ss_pred ----CC----eEEEE--ecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 480 ----LG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 480 ----~~----~~~~~--~~~h~-~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
+. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11 12222 23343 5799999999998776543 46888874
No 417
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=4 Score=38.43 Aligned_cols=115 Identities=9% Similarity=0.271 Sum_probs=78.1
Q ss_pred ccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008496 438 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM 515 (563)
Q Consensus 438 ~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~spdg~~lasgs~dg~v 515 (563)
+-...+.++.|+|+.. .|.+......-.+|=...|..+.++. +-.. --+|.|.-+|+|.++--.++.+
T Consensus 83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceE
Confidence 3445588999999865 34444444555566555688877653 3222 3567888889998888888999
Q ss_pred EEEecCCCeeEEE----------Eec-CCCEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 516 HIWSLKEGKIVKT----------YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 516 ~iw~~~~~~~~~~----------~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.++.+.....+.. +.. +.+.-.++|+|....|.++-...-+.||-+.
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 9998876532211 112 5567789999999998888776677777553
No 418
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.87 E-value=1.7 Score=46.11 Aligned_cols=133 Identities=16% Similarity=0.307 Sum_probs=72.6
Q ss_pred EEEEECCCCCEEEEEeCC----CeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCc
Q 008496 278 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEE 348 (563)
Q Consensus 278 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~ 348 (563)
+.+.|-.|..+.+.+... ..+|+|...|.+-..-...++.-..+.|-|+|..++|-..|| .|+++.. +|-
T Consensus 205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGL 283 (1243)
T COG5290 205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGL 283 (1243)
T ss_pred eEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-CCc
Confidence 456788888888887654 467888877765443333444445689999999999987665 3555542 221
Q ss_pred eeEEeeec---ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCC
Q 008496 349 WKQQFEFH---SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (563)
Q Consensus 349 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 411 (563)
....|... .......+|.-...+......+.+.+|..++-.-.....-.-..+.-+.|+|...
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence 11112111 1123344565444444445566777776544211111111122355677887644
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.78 E-value=18 Score=39.89 Aligned_cols=150 Identities=14% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEE-EEEE--ccCCC--CCCCC--CCcEEEEEEeC----------CCe
Q 008496 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIRW--SPTGS--GTNNP--NQQLILASASF----------DST 472 (563)
Q Consensus 410 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~--~p~~~--~~~~~--~~~~~l~s~s~----------dg~ 472 (563)
+..|+.++.|+.+.-.|.++++.+..+... +.+. .... .+.+. ....| .+. .++.|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence 346777888999988999999887665321 1110 0000 00000 00000 011 2334432 689
Q ss_pred EEEEeCCCCeEEEEecCC---------CC--------CE-EEEEEcCCCCEEEEEe------------------CCCcEE
Q 008496 473 VKLWDVELGKLLYSLNGH---------RE--------PV-YSLAFSPTGEYLASGS------------------LDKSMH 516 (563)
Q Consensus 473 i~iwd~~~~~~~~~~~~h---------~~--------~i-~~l~~spdg~~lasgs------------------~dg~v~ 516 (563)
|+-+|+++|+.++.+..- .+ .+ ..+++.|....+..+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999876410 00 11 2244555443333211 235677
Q ss_pred EEecCCCeeEEEEec-CCC-----------EEEEEEcCCCC---EEEEEECCCeEEEEEee
Q 008496 517 IWSLKEGKIVKTYTG-NGG-----------IFEVCWNKEGD---KIAACFANHTVCVLDFR 562 (563)
Q Consensus 517 iw~~~~~~~~~~~~~-~~~-----------i~~l~w~~~g~---~la~~~~~~~v~v~~~~ 562 (563)
-.|+++|++...++. +.. +.++. ..+|+ .|+.+..+|.+.++|-+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECC
Confidence 888899998887764 221 12332 12664 77888889999998853
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.77 E-value=6.4 Score=39.47 Aligned_cols=195 Identities=11% Similarity=0.151 Sum_probs=91.0
Q ss_pred CCEEEEee-CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecc-ccc--CCCCeEEEEECCCCCEEEEEeCC------C
Q 008496 227 GSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNE--KSKDVTTLDWNGEGTLLATGSYD------G 296 (563)
Q Consensus 227 ~~~latgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~V~~l~~s~~g~~l~sg~~d------g 296 (563)
.++|...+ ..+.|.|.|+.+.... | ...+..... ... .-..-.++.--|+|++++|+-.| |
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~------P---~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G 157 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRK------P---RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPG 157 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred CCcEEeeeeccCcEEEEECCCCCCC------C---ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence 45677666 6778999998643211 1 111111110 000 00011222334688888886432 3
Q ss_pred eEEEEEcCC-ceeEeeccC---CCCEEEEEeCCCCCEEEEeeC--------------------CCcEEEEECCCCceeEE
Q 008496 297 QARIWSTNG-DLKCTLSKH---KGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQQ 352 (563)
Q Consensus 297 ~i~vw~~~~-~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~--------------------D~~v~iwd~~~~~~~~~ 352 (563)
.+.+.|-++ .++...... ..--+.+-|.|..+.++|... -.++.+||+.+.+.++.
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 556666542 222222221 223466778888888888653 25799999999999998
Q ss_pred eeeccc--CeEEEecCC----CceEEEEeCCCeEEEEEcC-CC----cceeeecC-----------------CCcceeEE
Q 008496 353 FEFHSG--PTLDVDWRN----NVSFATSSTDNMIYVCKIG-EN----RPIKTFAG-----------------HQGEVNCV 404 (563)
Q Consensus 353 ~~~~~~--~~~~~~~~~----~~~~~~~~~d~~i~~~~~~-~~----~~~~~~~~-----------------h~~~i~~~ 404 (563)
+..... .++.+.|.. ..-|+.+.....|+.|--. .+ +.+..+.. -..-|+.|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 887543 356676642 3467777777777766542 21 11111111 12347889
Q ss_pred EECCCCCEEEEEe-CCCcEEEEeCCCC
Q 008496 405 KWDPTGSLLASCS-DDVTAKIWNMKQD 430 (563)
Q Consensus 405 ~~~~~~~~las~s-~dg~i~iwd~~~~ 430 (563)
..|.|.++|..+. .+|.||.||+...
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCC
Confidence 9999999986555 4999999998643
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.77 E-value=7.4 Score=35.33 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=77.3
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCC--------CEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--------EIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
...+.-..+|+|++++-.-.|-.. +.....+.....+.+|+- --..++|+.+ +..+...-+.+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD--------AKKFYYIDSLN 179 (310)
T ss_pred cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc--------CcEEEEEccCc
Confidence 456667789999995432222111 111112222222233321 1234555432 33456667778
Q ss_pred CeEEEEe--CCCC-----eEEEEecCC---CCC-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEE
Q 008496 471 STVKLWD--VELG-----KLLYSLNGH---REP-VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEV 538 (563)
Q Consensus 471 g~i~iwd--~~~~-----~~~~~~~~h---~~~-i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l 538 (563)
-+|.-|| ..+| +.++.++.. ..+ --.++..-+|.+.++.-..++|...|..+|+++.++.- ...|++.
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 8888888 3343 344554421 111 12344556777777777788999999999999988864 4468888
Q ss_pred EEcCC
Q 008496 539 CWNKE 543 (563)
Q Consensus 539 ~w~~~ 543 (563)
||--.
T Consensus 260 cFgGk 264 (310)
T KOG4499|consen 260 CFGGK 264 (310)
T ss_pred EecCC
Confidence 88644
No 422
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=8.9 Score=36.20 Aligned_cols=160 Identities=14% Similarity=0.215 Sum_probs=99.5
Q ss_pred ccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc-cCeEEEecCCCceEEEEe-CCCeEEEEEcCCCc
Q 008496 312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIGENR 389 (563)
Q Consensus 312 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~ 389 (563)
.+-+..|.++.|+|+.+.|++......-.||=-..|+++..+.... ...-.+.|..+..|+.+. .+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999999998888888888767788887765432 122345676777776554 56677777665442
Q ss_pred ce----------eeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce---eeeecccC-------CCEEEEEEc
Q 008496 390 PI----------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREHS-------KEIYTIRWS 449 (563)
Q Consensus 390 ~~----------~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~---~~~~~~~~-------~~i~~~~~~ 449 (563)
.+ ......+...-.++|+|..+.|..+-+-.-++||....... ++....+. ..+.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 21 11112244577899999998888888877788776653321 11111111 123445554
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008496 450 PTGSGTNNPNQQLILASASFDSTVKLWDVE 479 (563)
Q Consensus 450 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 479 (563)
+.. ..+|+-+..++.+.-.|..
T Consensus 242 ~~~--------~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 242 AIT--------NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCC--------CcEEEEecCCceEEEEecC
Confidence 432 2356666677777766654
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.54 E-value=7.4 Score=39.03 Aligned_cols=101 Identities=14% Similarity=0.242 Sum_probs=53.4
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEeCCCC-----c---eeeeecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEE
Q 008496 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA 467 (563)
Q Consensus 400 ~i~~~~~~~~~~~las~s~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~ 467 (563)
..+.+++.+++ ++++ +.....++.|.... + .+..+.. +......+.|.|+|. +++..+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence 34678888888 5554 33433334444321 1 1112221 123466788888764 344444
Q ss_pred eC------------------CCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q 008496 468 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 511 (563)
Q Consensus 468 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~ 511 (563)
+. .|.|.-++...++......++.. ...++|+|+|.++++-..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEEccC
Confidence 21 14455556655444333344433 478999999998876443
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.20 E-value=0.87 Score=41.77 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=48.8
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCeeEEEE---------------ecCCCEEEEEEcCCCCEEEEEECCCeEEEEEeeC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 563 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~~~~~~~~~---------------~~~~~i~~l~w~~~g~~la~~~~~~~v~v~~~~~ 563 (563)
+..++.+|.+-+.+|.+++||+.+++.+... .....|..+..+.+|.-|++ .+||...+||..|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 4557889999999999999999998864332 13345788888988876655 5678889988654
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.56 E-value=11 Score=38.22 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=83.6
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE
Q 008496 408 PTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY 485 (563)
Q Consensus 408 ~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~ 485 (563)
.+..+|. .|..-..+.--|+..++.+.+...|... -+.|.|..........+ .|+ |-.|..|.=-|.+. |..+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eq-tlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQ-TLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccc-eEE-eecccceEEecccccCCcee
Confidence 3455544 4555556666677888888777777654 56677765432222222 233 43444454446542 32222
Q ss_pred EecCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEecCCCeeEEEEec-CCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008496 486 SLNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 486 ~~~~h~~~i~~l~~sp----dg~~lasgs~dg~v~iw~~~~~~~~~~~~~-~~~i~~l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
... ...-++.-.||. ...|+|.||..|-|++||.-.-.....+++ ...|-.+.-+.+|++|.+.+.+ .+-+.|
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 211 111122223332 346899999999999999643222222222 3457888899999977665554 666666
Q ss_pred ee
Q 008496 561 FR 562 (563)
Q Consensus 561 ~~ 562 (563)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 426
>PRK10115 protease 2; Provisional
Probab=91.53 E-value=25 Score=38.62 Aligned_cols=235 Identities=7% Similarity=0.031 Sum_probs=111.8
Q ss_pred CeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCce--eEeeccCCCCEEEEEeCCCCCEEEEeeCC------CcEEEE
Q 008496 276 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW 342 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~v~iw 342 (563)
.+..+.|||||++|+.+... -.+++-+..+.. ...+.. .-..+.|.++++.|+-...+ ..|..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46778999999988876443 257777775332 112221 11569999999877655432 357777
Q ss_pred ECCCC--ceeEEeeecccCeEEEec-C-CCc-eEEEE--eCCCeEEEEEcC--CCcceeeecCCCcceeEEEECCCCCEE
Q 008496 343 DVKTE--EWKQQFEFHSGPTLDVDW-R-NNV-SFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 343 d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~l 413 (563)
++.++ +-...+........-..| . +.. .++.+ ..++.+++++.. ...+...+..-.+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88777 333334322222221112 1 222 22222 234567777742 2222222211111111222 2223333
Q ss_pred EEEeC-CCcEEEE--eCCCCceeeeeccc-C-CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEe
Q 008496 414 ASCSD-DVTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL 487 (563)
Q Consensus 414 as~s~-dg~i~iw--d~~~~~~~~~~~~~-~-~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~ 487 (563)
+.... ....+|. ++.....-..+..+ . ..+..+.+..+ .++++...+|.-+++-+.. +..+..+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 32222 1233333 33311111233334 2 35666666522 3677777788766654432 2333443
Q ss_pred c-CCCCCEEEEEEc--CCC-CEEEEEeC---CCcEEEEecCCCe
Q 008496 488 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK 524 (563)
Q Consensus 488 ~-~h~~~i~~l~~s--pdg-~~lasgs~---dg~v~iw~~~~~~ 524 (563)
. .....+..+.++ +++ .++++.+. -+.+..+|+.+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3 222223334455 444 34444432 3678889988765
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=91.50 E-value=12 Score=39.04 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=49.5
Q ss_pred CEEEEeeCC-----CcEEEEECCCCceeEEeeecccC-eEEEecCCCceEEEEeCC--CeEEEEEcCCCc--ceeeecCC
Q 008496 328 DYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAGH 397 (563)
Q Consensus 328 ~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~h 397 (563)
..++.|+.+ .++..||+.+..|...-...... -......++..++.++.+ ..+..|+...+. .+..+...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~ 352 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP 352 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC
Confidence 344555543 25677888887776533222111 112223355566666643 345566654331 11111111
Q ss_pred CcceeEEEECCCCCEEEEEeCCC---cEEEEeCCCCce
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY 432 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg---~i~iwd~~~~~~ 432 (563)
......+.. +|++.+.|+.++ .+..||..+...
T Consensus 353 r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 353 RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 111112222 577778877654 466788766554
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.49 E-value=0.033 Score=55.14 Aligned_cols=133 Identities=14% Similarity=0.257 Sum_probs=91.4
Q ss_pred EEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCC--CceEEEEeCCCeEEEEEcCCCcceeeec
Q 008496 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA 395 (563)
Q Consensus 318 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 395 (563)
.....|-|.+..++.++.+..+..||-.. +...... ..+..++++|.- +...+.+...+.+++|++......+.-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34567889888899999999999998433 2221111 122345666643 3445667788899999997654322212
Q ss_pred CCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCC
Q 008496 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (563)
Q Consensus 396 ~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 452 (563)
+-...-.-+.|++-++.++.+-..|.++|++..+.+.+..+-.|...+++++|.+.+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 222222237899999999999999999999988877665555588999999998875
No 429
>PHA03098 kelch-like protein; Provisional
Probab=90.91 E-value=11 Score=39.96 Aligned_cols=144 Identities=9% Similarity=0.070 Sum_probs=66.4
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCceeEeeccC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCcee
Q 008496 285 EGTLLATGSYDG------QARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWK 350 (563)
Q Consensus 285 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 350 (563)
++.+++.||.++ .+..||........+... ......+. -++...+.|+.+ ..+..||+.+.+|.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776543 456666554333222211 11111222 245566667655 35778999888776
Q ss_pred EEeeeccc-CeEEEecCCCceEEEEeCC------CeEEEEEcCCCc--ceeeecCCCcceeEEEECCCCCEEEEEeCCC-
Q 008496 351 QQFEFHSG-PTLDVDWRNNVSFATSSTD------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV- 420 (563)
Q Consensus 351 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~las~s~dg- 420 (563)
..-..... ....+...++..++.++.+ +.+..|+..+.+ .+..+........++. .++++++.|+.++
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCC
Confidence 53221111 0111222344555555521 346677765432 1111111111111222 2566767776432
Q ss_pred -------cEEEEeCCCCce
Q 008496 421 -------TAKIWNMKQDKY 432 (563)
Q Consensus 421 -------~i~iwd~~~~~~ 432 (563)
.+.+||..+.+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCcccceEEEecCCCCce
Confidence 267788766554
No 430
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.77 E-value=1.4 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCCCEEEEEe-CCCcEEEEecCCCeeEEEEecCCCEEEEEE
Q 008496 501 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 540 (563)
Q Consensus 501 pdg~~lasgs-~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w 540 (563)
|++++|.++. .+++|.++|..+++.+..+........+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 6777766554 578999999999998888766544555554
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.34 E-value=2.4 Score=37.35 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=29.7
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
.+..++|||.|-+ ++..++||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence 6889999998863 34678999999999999997653
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=5.2 Score=40.59 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=52.7
Q ss_pred CEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecC
Q 008496 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (563)
Q Consensus 317 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 396 (563)
.|..+..++.|..++-.+.+|.+.++=.+....-..++.....+.+-.+.-+..|.+ ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---------------------ss 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---------------------SS 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec---------------------cC
Confidence 567788899999998888898877664332111111111111111111110111110 01
Q ss_pred CCcceeEEEECCCC---CEEEEEeCCCcEEEEeCCCCc
Q 008496 397 HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK 431 (563)
Q Consensus 397 h~~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~~~ 431 (563)
..-.+..++|+|++ ..|..-+.|.+||+||+....
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 11245678999976 567778889999999986544
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=11 Score=33.70 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCEEEEee--CCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 008496 226 AGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303 (563)
Q Consensus 226 ~~~~latgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~ 303 (563)
+|.++.+.| +.+.|++|++.+++........+... +......-...+..+.| .+|....+|.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~-----FgEGit~~gd~~y~LTw-----------~egvaf~~d~ 118 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTV-----FGEGITKLGDYFYQLTW-----------KEGVAFKYDA 118 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccc-----cccceeeccceEEEEEe-----------ccceeEEECh
Confidence 456677666 46789999998775432111110000 00000001122333333 3566667765
Q ss_pred CCce-eEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeee--cccC---eEEEecCCCceEEEEeCC
Q 008496 304 NGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSSTD 377 (563)
Q Consensus 304 ~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~d 377 (563)
+.-. ...+ .-.+.=++++ .++..|+.++...++..=|+.+......... ...| ...+.|.+...+|-.=..
T Consensus 119 ~t~~~lg~~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 119 DTLEELGRF-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred HHhhhhccc-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeee
Confidence 4321 1111 1233445554 4555677666556677667766543333222 1112 233455555444433333
Q ss_pred CeEEEEEcCCCcceeee------------cCCCcceeEEEECCCC-CEEEEE
Q 008496 378 NMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC 416 (563)
Q Consensus 378 ~~i~~~~~~~~~~~~~~------------~~h~~~i~~~~~~~~~-~~las~ 416 (563)
..|...+..+++.+..+ ..|.+-.+.+++.|++ ++++||
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333333332221 1244567889998887 556665
No 434
>PRK10115 protease 2; Provisional
Probab=90.08 E-value=33 Score=37.65 Aligned_cols=193 Identities=9% Similarity=0.075 Sum_probs=96.6
Q ss_pred CceEEEEECCCCCEEEEeeCC-----CcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEE
Q 008496 216 SEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (563)
Q Consensus 216 ~~V~~~~~sp~~~~latgs~D-----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~ 290 (563)
-.+..+.|||++++||.+... ..+++-++.++...... + ...-..++|++|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~---------i----------~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL---------L----------DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc---------c----------cCcceEEEEeeCCCEEE
Confidence 346678999999988875422 24667777554311000 0 00114589999998777
Q ss_pred EEeCC------CeEEEEEcCCc---eeEeeccCCCCEE-EEEeCCCCCEEEEeeC---CCcEEEEECC--CCceeEEeee
Q 008496 291 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDVK--TEEWKQQFEF 355 (563)
Q Consensus 291 sg~~d------g~i~vw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~v~iwd~~--~~~~~~~~~~ 355 (563)
....+ ..|+.+++... ....+........ .+..+.++.+++..+. ++.+.+++.. .+.+...+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 66543 25666666533 2223333333333 3333447777664443 3568888842 3333222222
Q ss_pred cccCeEEEecCCCceEEEEeC---CCeEEEEEcCCCcceeeecCC-C-cceeEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 356 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~i~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
.......+.-..+..++.... ...|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 222222222112222222221 223444444421222333344 3 367778887 44566777778876666543
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=17 Score=38.91 Aligned_cols=187 Identities=11% Similarity=0.190 Sum_probs=90.8
Q ss_pred CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCccee---eecCCCcceeEEEECCCCCEE
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLL 413 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~l 413 (563)
-.|+|++.. |..........+.++.+.|..+..+++...+|+++++++-....-. -+......|..+.+..+|-.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 457777753 3333333333447888999999999999999999999874322111 011122234444444455333
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecc-cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEecCCC
Q 008496 414 ASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHR 491 (563)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~ 491 (563)
. ..+|.+.+-.-........+.. ........+|.-..... ....+|...-..+ ..+.-+..+. ....+....
T Consensus 143 l--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~---~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 143 L--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHR---QSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred E--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCC---cceeEEeechhhh-hcccceecccccccccCCCC
Confidence 3 3344444433222211222211 11111112332111000 0001111110000 0111111110 111121112
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe
Q 008496 492 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 530 (563)
Q Consensus 492 ~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~ 530 (563)
..+..++.||++++||--..+|.|.+-++...+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 457789999999999999999999998887666665554
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=12 Score=37.40 Aligned_cols=119 Identities=15% Similarity=0.305 Sum_probs=74.5
Q ss_pred cCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCce----eeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 395 ~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
....++|.++.|++|.+.||.--.|.+|.+++....+. .++.+..+..|....|.... -+|--+..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~----------e~A~i~~~ 132 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST----------EIAFITDQ 132 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe----------eEEEEecC
Confidence 34567899999999999999999999999998744332 22333445568889997652 23333333
Q ss_pred CeEEEEeCCCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCe
Q 008496 471 STVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEGK 524 (563)
Q Consensus 471 g~i~iwd~~~~-~~~~~~~~h~~~i~~l~~spdg~~lasgs--~dg~v~iw~~~~~~ 524 (563)
| +-+|-+... +.+...+.|...|+--.|.|+-+.+..++ ..+++.=+.++++.
T Consensus 133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 3 555554322 22344456777788888888877654333 23344444444443
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.56 E-value=1.6 Score=27.91 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=26.0
Q ss_pred cceeEEEECCCC---CEEEEEeCCCcEEEEeCCC
Q 008496 399 GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 399 ~~i~~~~~~~~~---~~las~s~dg~i~iwd~~~ 429 (563)
+.|.+++|+|.. .+|+..-.-|.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888888889999999985
No 438
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.00 E-value=26 Score=34.87 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=25.8
Q ss_pred eEEEEeCCCCeEEEE---------ecCCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEec
Q 008496 472 TVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL 520 (563)
Q Consensus 472 ~i~iwd~~~~~~~~~---------~~~h~~-~i~~l~~spdg~~la-sgs~dg~v~iw~~ 520 (563)
-|+++++..++...- +.++.. .=-...|||||++++ +....|...||-+
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 577788887664311 121111 113579999999875 5566787777754
No 439
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.26 E-value=6.5 Score=39.82 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=83.3
Q ss_pred eEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCC--------CEEEEEeCCCcEEEEeCCCCc-eeeeecccC
Q 008496 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQDK-YVHDLREHS 440 (563)
Q Consensus 370 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--------~~las~s~dg~i~iwd~~~~~-~~~~~~~~~ 440 (563)
.|..++....++-.|+.-++.+..+.-|..- -+.|.|+. +.|+--|+.+..| .|.+-.. .+.. ....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v-~esK 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKV-VESK 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceee-eeeh
Confidence 3445566667888888888888888776654 47777754 3344444444434 3543221 1110 0111
Q ss_pred CCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 008496 441 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 520 (563)
Q Consensus 441 ~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~ 520 (563)
.-.+.-.|+..+. ...-++|.||.-|-||+||--.-+....+.+....|..|..+.+|++|.+.+. ..+.+-|+
T Consensus 558 dY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 558 DYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hcccccccccccc-----ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 1122223332221 11237999999999999995433333445666778999999999998875553 35666665
Q ss_pred C
Q 008496 521 K 521 (563)
Q Consensus 521 ~ 521 (563)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=87.97 E-value=37 Score=35.47 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=63.3
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCceeEeeccCCCC--EEEEEeCCCCCEEEEeeCC--CcEEEEECCCCceeEEeee
Q 008496 285 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 285 ~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~ 355 (563)
++.+++.||.++ .+..||........+.....+ -.++. .-++...+.|+.+ .++..||..+.+|...-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 345667777543 455666554322222211111 01121 1245555666653 4688899887777553222
Q ss_pred cccC-eEEEecCCCceEEEEeCCC---eEEEEEcCCCcc--eeeecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008496 356 HSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (563)
Q Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~ 429 (563)
.... -..+.-.++..++.++.++ .+..|+..++.= +..+.-.......+. -++++.+.|+ .+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCC
Confidence 2111 1122223455556655432 344555443210 000100011111222 2566666664 466788766
Q ss_pred Cce
Q 008496 430 DKY 432 (563)
Q Consensus 430 ~~~ 432 (563)
++.
T Consensus 425 ~~W 427 (480)
T PHA02790 425 NTW 427 (480)
T ss_pred CcE
Confidence 554
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=43 Score=36.01 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=40.0
Q ss_pred CCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 295 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
--.|+|++..|.+...+.-..+++..+.|+.+. .|+....||++.+|++..
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 356999999998776655444588899999765 567778999999999754
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.70 E-value=2.8 Score=26.03 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=20.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 008496 488 NGHREPVYSLAFSPTGEYLASGS-LD--KSMHIW 518 (563)
Q Consensus 488 ~~h~~~i~~l~~spdg~~lasgs-~d--g~v~iw 518 (563)
..........+|||||++|+-.+ .+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33445678899999999887544 44 666555
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.27 E-value=36 Score=34.56 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcee-----EeeccCCCCEEEEEeCC----CCCEEEEeeCCCcEEEEECCC--Cc-----
Q 008496 285 EGTLLATGSYDGQARIWSTNGDLK-----CTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE----- 348 (563)
Q Consensus 285 ~g~~l~sg~~dg~i~vw~~~~~~~-----~~~~~h~~~V~~l~~~~----~~~~l~s~s~D~~v~iwd~~~--~~----- 348 (563)
+...|++|+..|.+|||++.+... ..-..-+.||..+..-+ .....++.=.-+.+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 346899999999999999754221 11123457888876532 222334445567788887621 11
Q ss_pred ---eeEEeeeccc-CeEEE---ecC---CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeC
Q 008496 349 ---WKQQFEFHSG-PTLDV---DWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (563)
Q Consensus 349 ---~~~~~~~~~~-~~~~~---~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~ 418 (563)
+...++.+-. ....+ .+. ....+..-+.||.+.+++-+...-...+.+ ---.-.+.|.+....|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1111111111 11111 221 134567789999999998765432222322 112235778888888999999
Q ss_pred CCcEEEEeC
Q 008496 419 DVTAKIWNM 427 (563)
Q Consensus 419 dg~i~iwd~ 427 (563)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999998875
No 444
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.16 E-value=54 Score=36.45 Aligned_cols=274 Identities=13% Similarity=0.180 Sum_probs=142.5
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
|-.+.|--|..+|..+.+||.+.-+-+...+.... ..+. ..-...+++--.|+..++.-+-+..|.-
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls---------d~Kk----~~lGt~P~~Lr~f~sk~~t~vfa~sdrP 652 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS---------DRKK----VTLGTQPISLRTFSSKSRTAVFALSDRP 652 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEc---------cccc----cccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence 44455655678899999999988776543221000 0000 0111345566667766665566667777
Q ss_pred EEEEEcCCceeEeeccCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCCc--eeEEeeecccCeEEEecCC-CceEE
Q 008496 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSFA 372 (563)
Q Consensus 298 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~ 372 (563)
..+|..++++..+--.-+..-....|+.+ ...|+++. .+.+++--+..-. ..++...+. +...+++.+ ...|.
T Consensus 653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFG 730 (1096)
T ss_pred EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-ChhheEecccceEEE
Confidence 78888777765432211111111223322 23455544 3455555433211 122222211 222333333 22222
Q ss_pred EEeC-----------CCe---EEEEEcCCCcceeeecCCCc-------ceeEEEECCC-CCEEEEEe----------CCC
Q 008496 373 TSST-----------DNM---IYVCKIGENRPIKTFAGHQG-------EVNCVKWDPT-GSLLASCS----------DDV 420 (563)
Q Consensus 373 ~~~~-----------d~~---i~~~~~~~~~~~~~~~~h~~-------~i~~~~~~~~-~~~las~s----------~dg 420 (563)
+.+. ... ++++|-.+ ...+..|.- .|.++.|..| +.+++.|. ..|
T Consensus 731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 731 VLSNRIESSAEYYGEEYEVSFLRVLDQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG 807 (1096)
T ss_pred EEecccccchhhcCCcceEEEEEEecCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence 2221 111 22333222 223333321 3556668776 67777764 235
Q ss_pred cEEEEeCCCCceeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEE
Q 008496 421 TAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 498 (563)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~ 498 (563)
.|.|+.+...+.+..... -.+.++++.-- +| .+| ++....|++|++.+.+.++.-..|..++..+.
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng---------kll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVEF-NG---------KLL--AGINQSVRLYEWTTERELRIECNISNPIIALD 875 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhhh-CC---------eEE--EecCcEEEEEEccccceehhhhcccCCeEEEE
Confidence 566665544222221111 12334444321 11 133 45678999999998877777777889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecC
Q 008496 499 FSPTGEYLASGSLDKSMHIWSLK 521 (563)
Q Consensus 499 ~spdg~~lasgs~dg~v~iw~~~ 521 (563)
..-.|..++.|..-+++.+-..+
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEEe
Confidence 99999999999988877665543
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.01 E-value=7.7 Score=34.08 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=25.0
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCeEEEEEcCC
Q 008496 275 KDVTTLDWNGEG------TLLATGSYDGQARIWSTNG 305 (563)
Q Consensus 275 ~~V~~l~~s~~g------~~l~sg~~dg~i~vw~~~~ 305 (563)
..|..++|||.| .+|++-+.+|.+.||...+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999965 5788888999999997543
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=9.9 Score=38.72 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=49.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEec---------CCCeeEEEE----------ecCCC--EEEEEEcCCC---CEEE
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWSL---------KEGKIVKTY----------TGNGG--IFEVCWNKEG---DKIA 548 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~~---------~~~~~~~~~----------~~~~~--i~~l~w~~~g---~~la 548 (563)
.|..+..||.|..+|..|.+|.+.++=. ++|+.+-+. ..... +.-.+|+|++ .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3678889999999999999997666542 334322211 11111 3357899987 5888
Q ss_pred EEECCCeEEEEEee
Q 008496 549 ACFANHTVCVLDFR 562 (563)
Q Consensus 549 ~~~~~~~v~v~~~~ 562 (563)
.-.+|..++|||+.
T Consensus 185 iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLS 198 (741)
T ss_pred EEecCcEEEEEecC
Confidence 88899999999864
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.71 E-value=41 Score=34.59 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=37.8
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeec-----ccCCCEEEEEEccCC
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-----EHSKEIYTIRWSPTG 452 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~-----~~~~~i~~~~~~p~~ 452 (563)
-...+.|+|.|||++|++--..|.|++++..+.. .+..+. ........|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3456789999999988877667999999765432 221111 124567889999874
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.08 E-value=20 Score=29.60 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=71.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008496 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 474 (563)
Q Consensus 403 ~~~~~~~~~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~ 474 (563)
.-+|......|+.++.-|.|.|.+..... .+..+ .-...|++++-.+-.. ....-.|+.|+ ..+|.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~----~~~~D~LliGt-~t~ll 76 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP----DDGRDCLLIGT-QTSLL 76 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC----CCCcCEEEEec-cceEE
Confidence 34566666778888888899998865332 22222 2345677776544321 01122455555 46799
Q ss_pred EEeCCCCeEEEEecCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 475 LWDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 475 iwd~~~~~~~~~~~~h~~~i~~l~~sp---dg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
.||+.....++.-.- ...|+++.+-. ...-|+..+.+..|.-||....++..+.
T Consensus 77 aYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 77 AYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 999987776654332 35677777632 2233444555777888887665555543
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.91 E-value=66 Score=35.37 Aligned_cols=73 Identities=23% Similarity=0.374 Sum_probs=53.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEE-----EcCC-----c--eeEe-e--------ccCCCCEEEEEeCCC---CCEE
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIW-----STNG-----D--LKCT-L--------SKHKGPIFSLKWNKK---GDYL 330 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw-----~~~~-----~--~~~~-~--------~~h~~~V~~l~~~~~---~~~l 330 (563)
-.|..+..|++|++++..|..|.+.+. ..++ + ..+. + ..+...|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999999988765543 2222 1 1121 1 234567899999997 4789
Q ss_pred EEeeCCCcEEEEECCCC
Q 008496 331 LTGSCDKTAIVWDVKTE 347 (563)
Q Consensus 331 ~s~s~D~~v~iwd~~~~ 347 (563)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999643
No 450
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.20 E-value=61 Score=34.82 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=44.4
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008496 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (563)
Q Consensus 218 V~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~ 297 (563)
++++.-+|.+..++.|..||.+++|++....... .. ....+-..+.|...| |+++..|..
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk--------i~----------~~~~p~~nlv~tnhg--l~~~tsdrr 76 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK--------IC----------EEAKPKENLVFTNHG--LVTATSDRR 76 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhh--------hh----------hhcCCccceeeeccc--eEEEeccch
Confidence 5677778999999999999999999975432100 00 001112223333333 566677777
Q ss_pred EEEEEcCCceeE
Q 008496 298 ARIWSTNGDLKC 309 (563)
Q Consensus 298 i~vw~~~~~~~~ 309 (563)
+.-|..+|-...
T Consensus 77 ~la~~~dgvvqq 88 (1636)
T KOG3616|consen 77 ALAWKEDGVVQQ 88 (1636)
T ss_pred hheeeccCcchh
Confidence 888877764433
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.87 E-value=11 Score=40.51 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=67.3
Q ss_pred EEEEEEeCCCeEEEEeCCC-------C-------------eEEEEecCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 008496 462 LILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 462 ~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~i~~l~~s--pdg~~lasgs~dg~v~iw~ 519 (563)
-+|+.|..||.|.+|.++. . ++.+.+. ....+++++++ ...++||+++-...|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 3788899999999996521 0 0112222 23468999998 7788899888888888876
Q ss_pred cCC--Cee--EEEEecCCCEEEEEEcCCC---C---EEEEEECCCeEEEEEee
Q 008496 520 LKE--GKI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDFR 562 (563)
Q Consensus 520 ~~~--~~~--~~~~~~~~~i~~l~w~~~g---~---~la~~~~~~~v~v~~~~ 562 (563)
... .+. .........|.+++|-++. . +|++++-.|.+.+|+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 543 121 1122233457788886643 2 88889999999999883
No 452
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.65 E-value=68 Score=34.47 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=77.1
Q ss_pred ceeeecCCCc-ceeEEEECCCCCEEEEEeCCC-cEEEEeCCCCce----e-eeecccCCCEEEEEEccCCCCCCCCCCcE
Q 008496 390 PIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY----V-HDLREHSKEIYTIRWSPTGSGTNNPNQQL 462 (563)
Q Consensus 390 ~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg-~i~iwd~~~~~~----~-~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 462 (563)
++.-..++.. .+.+++.++++..+|..+.++ .+.+..+..+.. . ..+. ...++.-.|.+.+. .
T Consensus 353 pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~--------v 422 (599)
T PRK13613 353 PVPGALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD--------L 422 (599)
T ss_pred cCCCccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC--------E
Confidence 3333334444 678899999999988777665 445544322221 0 1111 12244445554442 2
Q ss_pred EEEEEeCCC--eEEEEeCCCCeEEE-EecCCCC-CEEEEEEcCCCCEEEEEeC---CCcEEEEecC---CCe-eEEE---
Q 008496 463 ILASASFDS--TVKLWDVELGKLLY-SLNGHRE-PVYSLAFSPTGEYLASGSL---DKSMHIWSLK---EGK-IVKT--- 528 (563)
Q Consensus 463 ~l~s~s~dg--~i~iwd~~~~~~~~-~~~~h~~-~i~~l~~spdg~~lasgs~---dg~v~iw~~~---~~~-~~~~--- 528 (563)
+.+-++.++ .+++..- .|+... ......+ .|..+..|+||..+|.-.. .++|.|=-+. .|. .+..
T Consensus 423 Wtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~ 501 (599)
T PRK13613 423 WVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRS 501 (599)
T ss_pred EEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEE
Confidence 222111122 2444432 233211 1112223 7999999999987765332 3556555442 232 1111
Q ss_pred E-ecCCCEEEEEEcCCCCEEEEEE
Q 008496 529 Y-TGNGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 529 ~-~~~~~i~~l~w~~~g~~la~~~ 551 (563)
. .....+.+++|..++..++.+.
T Consensus 502 l~~~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 502 LAPELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred eccCCCccceeEEcCCCEEEEEec
Confidence 1 1234578999999998777663
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.63 E-value=18 Score=39.01 Aligned_cols=110 Identities=11% Similarity=0.203 Sum_probs=72.5
Q ss_pred cCCCceEEEEeCCCeEEEEEcCC-------C-------------cceeeecCCCcceeEEEEC--CCCCEEEEEeCCCcE
Q 008496 365 WRNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTA 422 (563)
Q Consensus 365 ~~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~i~~~~~~--~~~~~las~s~dg~i 422 (563)
|.+...++.|..||.|.+|.+.. . +|...+. -...+++++++ ...++||.+++...|
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceE
Confidence 34455677888999999986521 0 1222222 23368899998 888999999999999
Q ss_pred EEEeCCC--Cceee-eecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008496 423 KIWNMKQ--DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 478 (563)
Q Consensus 423 ~iwd~~~--~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 478 (563)
.||-+.. .+..+ .-..|...|.+|.|-++... +++...|++++-.|.+-+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence 8886543 11111 11135567888999876532 222247888999999999887
No 454
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.45 E-value=17 Score=33.84 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=73.8
Q ss_pred EEEEcCCCcceeeec-CCCcceeEEEECCCCCEEEEEeC-C--CcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCC
Q 008496 381 YVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD-D--VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 456 (563)
Q Consensus 381 ~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~las~s~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 456 (563)
.+||+.+++. +.+. ...-.+.+-.+-+||++|.+|+. + ..+|+++...................-+|-|.. ..
T Consensus 49 ~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~--~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA--TT 125 (243)
T ss_pred EEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc--eE
Confidence 3566655432 1111 11222334456789999999887 3 347777754311011111111112233454432 12
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCC-CeEEEE---ecC----CCCC-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 457 NPNQQLILASASFDSTVKLWDVEL-GKLLYS---LNG----HREP-VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 457 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~---~~~----h~~~-i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
-++++.+++.|+...+..+|.-.. ...... +.. .... ---+...|||++++.+..+. .|||..+.++++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 344556666666666677776532 111111 110 0011 11355689999998888654 467888887776
Q ss_pred EEe
Q 008496 528 TYT 530 (563)
Q Consensus 528 ~~~ 530 (563)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 664
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.18 E-value=55 Score=33.11 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=79.2
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008496 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 480 (563)
Q Consensus 401 i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 480 (563)
...+..++++.+++.+..-..++-||-........-......++.+.|.+++. ++ ..+.+|.+. |....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~---------l~-l~g~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG---------LW-LLTRGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC---------EE-EEeCCceEE-EecCC
Confidence 44556678888777665544444455322111111122345678888887764 33 334566653 34444
Q ss_pred Ce-----EEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEEEEe----cCCCEEEEEEcCCCCEEEE
Q 008496 481 GK-----LLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT----GNGGIFEVCWNKEGDKIAA 549 (563)
Q Consensus 481 ~~-----~~~~~~~--h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~~~~----~~~~i~~l~w~~~g~~la~ 549 (563)
++ ....+.. -...++++.|.+++..+++| ..|.+.... ..|+--.... ....++.+.|.++++-.++
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 43 2222221 12358999999988876655 567665543 3443211111 1245789999888877777
Q ss_pred EECCCeEE
Q 008496 550 CFANHTVC 557 (563)
Q Consensus 550 ~~~~~~v~ 557 (563)
| .+|.|.
T Consensus 388 G-~~G~il 394 (398)
T PLN00033 388 G-NDGVLL 394 (398)
T ss_pred e-CCcEEE
Confidence 7 666654
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.14 E-value=12 Score=34.27 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=51.2
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCceeE--------eec-------cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008496 282 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (563)
Q Consensus 282 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 346 (563)
+...+.+|++-+.+|.+++||+...... .+. .....|..+..+.+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456888999999999999997643211 122 3556788899998888777655 57889999887
Q ss_pred CceeEE
Q 008496 347 EEWKQQ 352 (563)
Q Consensus 347 ~~~~~~ 352 (563)
+.|...
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 777653
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.85 E-value=34 Score=36.97 Aligned_cols=217 Identities=14% Similarity=0.292 Sum_probs=99.1
Q ss_pred cCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecc------cCeEEEecCCC-ceEEEEeCCCeEEEEEc
Q 008496 313 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRNN-VSFATSSTDNMIYVCKI 385 (563)
Q Consensus 313 ~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~d~~i~~~~~ 385 (563)
.-...|...+||.+.+.++....+.+|.+.+-.- ..+..+.... +.-+.+.|... ..|-.-+... .+
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~ra-----ql 183 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARA-----QL 183 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhccccchhh-----hc
Confidence 3456788899999999777777788888876321 1111111111 11223444311 1111000000 00
Q ss_pred CCCcceeeecCCCcce-------eEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeec-ccCCCEEEEEEccCCC
Q 008496 386 GENRPIKTFAGHQGEV-------NCVKWDPTGSLLASCSDD----VTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS 453 (563)
Q Consensus 386 ~~~~~~~~~~~h~~~i-------~~~~~~~~~~~las~s~d----g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~ 453 (563)
+ .|...+.-..+.+ .-+.|.-|..+.+.+... ..+|+|.- .+.. .... ..++.-..+.|-|.|+
T Consensus 184 r--dptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~l-ds~sep~~g~e~~LSWkpqgS 259 (1243)
T COG5290 184 R--DPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQL-DSASEPVTGMEHQLSWKPQGS 259 (1243)
T ss_pred c--CCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecc-cccc-ccccCCcccchhccccccCCc
Confidence 0 0100000011111 135566666666555432 23555541 1111 0000 1122234478999886
Q ss_pred CCCCCCCcEEEEEEeCCC-----eEEEEeCC---CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCee
Q 008496 454 GTNNPNQQLILASASFDS-----TVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 525 (563)
Q Consensus 454 ~~~~~~~~~~l~s~s~dg-----~i~iwd~~---~~~~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~ 525 (563)
.+++-..|| .|.++... -|..-..+ +...-+..++|+-....+|.+- .+.|++|-.++..-
T Consensus 260 ---------~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhW 328 (1243)
T COG5290 260 ---------KYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHW 328 (1243)
T ss_pred ---------eeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEE
Confidence 567766554 24444321 11111111 1223356677877666666543 45799998776542
Q ss_pred -EEEEecCCCEEEEEEcCCCC-EEEEE
Q 008496 526 -VKTYTGNGGIFEVCWNKEGD-KIAAC 550 (563)
Q Consensus 526 -~~~~~~~~~i~~l~w~~~g~-~la~~ 550 (563)
++.-..-.++.-+.|+|.-+ .|...
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred EEEEeecCCCcceeeeccccCcEEEEe
Confidence 11111223466688999653 44333
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.55 E-value=52 Score=32.33 Aligned_cols=142 Identities=21% Similarity=0.323 Sum_probs=78.1
Q ss_pred cceeEEEECCCCCEEEEEeCCCc------EEEEeCCC--C--cee-----eeecccCC--------CEEEEEEccCCCCC
Q 008496 399 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQ--D--KYV-----HDLREHSK--------EIYTIRWSPTGSGT 455 (563)
Q Consensus 399 ~~i~~~~~~~~~~~las~s~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~~~~~p~~~~~ 455 (563)
+.++.+.+.+++..+++.|++|. +..+++.. + ..+ ..++...+ ..-+|++.+++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 45678888876666777788887 54444432 1 001 01111111 112444433332
Q ss_pred CCCCCcEEEEEEeCC------CeEEEEeCCCCeEEEEec---------------CCCCCEEEEEEcCCCCEEEEEeC---
Q 008496 456 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL--- 511 (563)
Q Consensus 456 ~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~i~~l~~spdg~~lasgs~--- 511 (563)
++++.-.+ ..|+-++.. |+.+..+. ......-+|+++|||+.|.++..
T Consensus 98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence 44454445 677777765 55543321 12345789999999996555432
Q ss_pred --CC-----------cEEEEecCC-CeeEEEE--e--------cCCCEEEEEEcCCCCEEEEE
Q 008496 512 --DK-----------SMHIWSLKE-GKIVKTY--T--------GNGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 512 --dg-----------~v~iw~~~~-~~~~~~~--~--------~~~~i~~l~w~~~g~~la~~ 550 (563)
|+ +|..||..+ +...+.| . ....|.++.+-++++.|+.-
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 244455544 3333333 2 23568899999999987764
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=61 Score=37.19 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=26.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCc
Q 008496 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306 (563)
Q Consensus 276 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~ 306 (563)
....++|+|.-.+++.|..+|.+.++...+-
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce
Confidence 3456789999999999999999999976553
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.11 E-value=7 Score=41.71 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-----cee-Eee----------c-----------cCCCCEEEEEeCC----CCCEEEE
Q 008496 284 GEGTLLATGSYDGQARIWSTNG-----DLK-CTL----------S-----------KHKGPIFSLKWNK----KGDYLLT 332 (563)
Q Consensus 284 ~~g~~l~sg~~dg~i~vw~~~~-----~~~-~~~----------~-----------~h~~~V~~l~~~~----~~~~l~s 332 (563)
++...++.+..||.+....... ... ... . ...+.+..+..+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888898887765432 111 110 0 0123455666666 6789999
Q ss_pred eeCCCcEEEEECCCCceeEEeee
Q 008496 333 GSCDKTAIVWDVKTEEWKQQFEF 355 (563)
Q Consensus 333 ~s~D~~v~iwd~~~~~~~~~~~~ 355 (563)
.+.|+++|+||+.++.++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999998665543
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=81.83 E-value=56 Score=32.23 Aligned_cols=150 Identities=9% Similarity=0.072 Sum_probs=80.0
Q ss_pred ccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceee-ecCCCcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 008496 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (563)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~ 435 (563)
...+.++...++..++..+..|.++.-.......-.. ..+-...+.++.+.+++++++.+ ..|.+++=..+.+..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 3445666666666677777777666431111111111 12234568899999999887665 457665322233221111
Q ss_pred ecc----cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEec---CCCCCEEEEEEcCCCCEEEE
Q 008496 436 LRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLAS 508 (563)
Q Consensus 436 ~~~----~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~l~~spdg~~las 508 (563)
... -...++++.+.|.+. ++ .++.+|.|.. ....|+.-.... .-....+.+.|..+++.+++
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~---------~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE---------IW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred ccCCccccccceeeEEEcCCCC---------EE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 111 123467788877543 33 4456676543 334343322221 22235788888877777664
Q ss_pred EeCCCcEEEEe
Q 008496 509 GSLDKSMHIWS 519 (563)
Q Consensus 509 gs~dg~v~iw~ 519 (563)
+..|.|..|+
T Consensus 320 -G~~G~il~~~ 329 (334)
T PRK13684 320 -GQRGVLLRYV 329 (334)
T ss_pred -CCCceEEEec
Confidence 5577777665
No 462
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.30 E-value=17 Score=35.24 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCCeEEEEec---------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 470 DSTVKLWDVELGKLLYSLN---------------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 470 dg~i~iwd~~~~~~~~~~~---------------------------~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
|+.+.--|+.+++.+++.. ..---|++|...++|.+|+|.-.-..|.+.+.++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Q ss_pred CeeEEEEecC-CCEEE-----EEEcCCCCEEEEEECCCeEEEEE
Q 008496 523 GKIVKTYTGN-GGIFE-----VCWNKEGDKIAACFANHTVCVLD 560 (563)
Q Consensus 523 ~~~~~~~~~~-~~i~~-----l~w~~~g~~la~~~~~~~v~v~~ 560 (563)
|+++..+.+. ..=+. ++|..|-+.+-.+..++.|.|+|
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 463
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.88 E-value=67 Score=32.53 Aligned_cols=220 Identities=12% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCCEEEEee-CCCcEEEEECCCC----ceeEEeee---cc----cCeEEEec-CCCceEEEE--eC----CCeEEEEEcC
Q 008496 326 KGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEF---HS----GPTLDVDW-RNNVSFATS--ST----DNMIYVCKIG 386 (563)
Q Consensus 326 ~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~~---~~----~~~~~~~~-~~~~~~~~~--~~----d~~i~~~~~~ 386 (563)
..++|+..+ ..+.|.|.|+.+. ++.+.++. .. .....+.. .+...++++ .. -|.+.+.+-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 446676666 5678999987643 33333332 11 01111212 222233332 11 2345555554
Q ss_pred CCcceeeecCCCc---ceeEEEECCCCCEEEEEe--------------------CCCcEEEEeCCCCceeeeecccC--C
Q 008496 387 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS--------------------DDVTAKIWNMKQDKYVHDLREHS--K 441 (563)
Q Consensus 387 ~~~~~~~~~~h~~---~i~~~~~~~~~~~las~s--------------------~dg~i~iwd~~~~~~~~~~~~~~--~ 441 (563)
+...........+ .--.+-|.|..+.++|.. .-.++.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 4444433332111 123456677777666653 23579999999999888776432 2
Q ss_pred CEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCe----EEEEecC-----C------------CCCEEEEEE
Q 008496 442 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGK----LLYSLNG-----H------------REPVYSLAF 499 (563)
Q Consensus 442 ~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~----~~~~~~~-----h------------~~~i~~l~~ 499 (563)
....|+|..+. ....-++.+...++|..|-- +.++ .+..+.. - ..-|+.|..
T Consensus 246 ~pLEvRflH~P------~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDP------DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SST------T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred ceEEEEecCCC------CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 34567776543 22233444445555555533 3332 2222211 1 123789999
Q ss_pred cCCCCEEEEEe-CCCcEEEEecCCC---eeEEEEe-c----------------CCCEEEEEEcCCCCEEEEEE
Q 008496 500 SPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G----------------NGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 500 spdg~~lasgs-~dg~v~iw~~~~~---~~~~~~~-~----------------~~~i~~l~w~~~g~~la~~~ 551 (563)
|.|.++|.... .+|.|+-||+.+- +++.... + .++..=|..|.||++|.+..
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999986555 6899999999764 3333221 1 12234477788999988763
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.62 E-value=59 Score=31.09 Aligned_cols=131 Identities=13% Similarity=0.222 Sum_probs=73.9
Q ss_pred CcEEEEECCCCceeEEeeecccCeEEEecCCCceEEEEe-------CCCeEEEEEcCCCcceeeecCC-----CcceeEE
Q 008496 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS-------TDNMIYVCKIGENRPIKTFAGH-----QGEVNCV 404 (563)
Q Consensus 337 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~~~~~~~~~~~~~~h-----~~~i~~~ 404 (563)
..|++||..+.+|...-..-.+.|.++.|.++..++.++ ....+..|+..... ...+.+- .++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 358999999888877655566788999997555444332 23456677765543 2223331 3567777
Q ss_pred EECC-CC-CEEEEEe-CCC--cEEEEeCCCCceeee-ecccCCCEEEEEEccC-CC----CCCCCCCcEEEEEEe
Q 008496 405 KWDP-TG-SLLASCS-DDV--TAKIWNMKQDKYVHD-LREHSKEIYTIRWSPT-GS----GTNNPNQQLILASAS 468 (563)
Q Consensus 405 ~~~~-~~-~~las~s-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~-~~----~~~~~~~~~~l~s~s 468 (563)
.+.. |+ ++.+.|. .++ .|.-||-.+...+.. .......|..+.+-|- .. .....+++.+|++|.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGS 169 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEee
Confidence 6632 33 3444443 333 466677665555443 2333456777777665 11 111123456666664
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.56 E-value=12 Score=23.29 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCEEEEEE
Q 008496 461 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 499 (563)
Q Consensus 461 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 499 (563)
+.++++.-.+++|.++|..+++.+..+.--..| ..++|
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 346667777899999999988887776543333 34444
No 466
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=79.06 E-value=52 Score=35.69 Aligned_cols=149 Identities=24% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCCcceeEEEECCCCCEEEEEeCCCc--EEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-
Q 008496 396 GHQGEVNCVKWDPTGSLLASCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST- 472 (563)
Q Consensus 396 ~h~~~i~~~~~~~~~~~las~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~- 472 (563)
.+...+..+.|+|+|..++..+.++. ..+|-+.... .+..+...+....|+|.+....... .......|+.
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~~~~~~~ 130 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLT---AEGASKRDGGD 130 (620)
T ss_pred ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEe---cccccccCCce
Confidence 35566778999999999988774333 3444432221 2223445566777887765211000 0000111221
Q ss_pred ------EEEEeCCCC-e-----------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEecCCCeeEE
Q 008496 473 ------VKLWDVELG-K-----------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-------MHIWSLKEGKIVK 527 (563)
Q Consensus 473 ------i~iwd~~~~-~-----------~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~-------v~iw~~~~~~~~~ 527 (563)
+.+|....+ . ...........+...++++++..++....+.. ..++...++.+..
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELES 210 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEE
Confidence 223322222 1 11122223456777777887887776654432 3344334666666
Q ss_pred EEecCCCEEEEEEcCCCCEEEEE
Q 008496 528 TYTGNGGIFEVCWNKEGDKIAAC 550 (563)
Q Consensus 528 ~~~~~~~i~~l~w~~~g~~la~~ 550 (563)
...+...+..+.|.++|+.++.-
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~ 233 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALL 233 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEe
Confidence 66666778899999999966654
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.73 E-value=0.34 Score=48.29 Aligned_cols=143 Identities=20% Similarity=0.338 Sum_probs=94.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCCceeEEeeecc
Q 008496 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHS 357 (563)
Q Consensus 279 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~ 357 (563)
...|-+.+.-++.++.+-.+..||..++....+. -++....++|..++..++ .+-..+.+.+||+.+.... +++...
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccC
Confidence 4567887777888898989999998776654443 345556788988887654 4556789999998764322 222211
Q ss_pred cCe-EEEecCCCce-EEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCcEEE
Q 008496 358 GPT-LDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (563)
Q Consensus 358 ~~~-~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~i~i 424 (563)
... .-..|..... .+.+-..+.+.+|..+..+.+...--|...+++++|.+.+. .+.|+.|..+.+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 111 1134544333 34445677889999887776555544889999999998764 456776765543
No 468
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=78.24 E-value=1.1e+02 Score=33.32 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=81.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe--EEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeE
Q 008496 274 SKDVTTLDWNGEGTLLATGSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (563)
Q Consensus 274 ~~~V~~l~~s~~g~~l~sg~~dg~--i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 351 (563)
...+..+.|+|+|..++..+.++. .++|-.... . ....+...|....|+|.+..++....++..+.- +. .
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~----~~--~ 130 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRD----GG--D 130 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C-ceeeeecccccceeCCCCCeEEEEecccccccC----Cc--e
Confidence 355778899999999998874432 344433211 0 344566678889999999998873332211110 00 0
Q ss_pred EeeecccCeEEEecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCCCc-------EEE
Q 008496 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-------AKI 424 (563)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~dg~-------i~i 424 (563)
.+.. .-.. .|.+... .....+++.+... ...........+....+++++..++....+.. ..+
T Consensus 131 ~~~~---~~~~-~~~~~~g----~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (620)
T COG1506 131 HLFV---DRLP-VWFDGRG----GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYV 200 (620)
T ss_pred eeee---cccc-eeecCCC----CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEE
Confidence 0000 0000 0100000 1233344555443 22223334456667777777777766655442 222
Q ss_pred EeCCCCceeeeecccCCCEEEEEEccCCC
Q 008496 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (563)
Q Consensus 425 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 453 (563)
+.. ....+..+......+..+.|.+++.
T Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~gk 228 (620)
T COG1506 201 LIE-GNGELESLTPGEGSISKLAFDADGK 228 (620)
T ss_pred Eec-CCCceEEEcCCCceeeeeeeCCCCC
Confidence 322 2223333444445577777777765
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.68 E-value=22 Score=27.15 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=30.2
Q ss_pred EeCCCcEEEEecCCCeeEEEEecCCCEEEEEEcCCCCEEEEEEC
Q 008496 509 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 552 (563)
Q Consensus 509 gs~dg~v~iw~~~~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~ 552 (563)
+..+|++.-||..+++......+=.-.+.++.++|++.|.++-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 44568899999999875444444445688999999998888743
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.43 E-value=9.8 Score=40.58 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=29.5
Q ss_pred CEEEEEEcC----CCCEEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 493 PVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 493 ~i~~l~~sp----dg~~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
.+.+++.++ +..+|++.+.|+++++||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456677777 6789999999999999999999997665
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.19 E-value=95 Score=31.63 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=38.8
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 462 LILASASFDSTVKLWDVELGKLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 462 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i--~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
..++.++.++++.||. ..++++..+....|| ....|..-...|++-+.+|.+.+-=+.|
T Consensus 301 ~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3577889999999984 456777766544554 2223333356788888888887765544
No 472
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.31 E-value=1.1e+02 Score=32.07 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=66.1
Q ss_pred CCCEEEEE---eCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEeeecccC--
Q 008496 285 EGTLLATG---SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-- 359 (563)
Q Consensus 285 ~g~~l~sg---~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-- 359 (563)
+|-+++++ ...+...+.|.+|.++..+.........+...++|++++..+ ..+..+|+. |+....+......
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 34455555 345677778888877665543322222266678888776554 677777764 3333333322211
Q ss_pred -eEEEecCCC-ceEEEE-----------------------eCCCeEEEEEcCCCc-ceee----------ecC---CC--
Q 008496 360 -TLDVDWRNN-VSFATS-----------------------STDNMIYVCKIGENR-PIKT----------FAG---HQ-- 398 (563)
Q Consensus 360 -~~~~~~~~~-~~~~~~-----------------------~~d~~i~~~~~~~~~-~~~~----------~~~---h~-- 398 (563)
-.++...++ ..++.+ .....++.|+...-- +... ..+ ..
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 112222222 111111 222344566654321 1111 000 01
Q ss_pred cceeEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeecc
Q 008496 399 GEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (563)
Q Consensus 399 ~~i~~~~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (563)
-.++++.+.+ ++.+++|+-.-..|...|.++++....+-.
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 2489999998 566666665555777778777766554443
No 473
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=75.12 E-value=1.7e+02 Score=34.04 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.3
Q ss_pred CEEEEEEcCCCCEEEEEECCCeE
Q 008496 534 GIFEVCWNKEGDKIAACFANHTV 556 (563)
Q Consensus 534 ~i~~l~w~~~g~~la~~~~~~~v 556 (563)
.+.+||-+|||...++-.+|-.|
T Consensus 663 sp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 663 SPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred CcceEEECCCCcEEEecCCchhh
Confidence 35789999999987776666544
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.75 E-value=12 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=19.1
Q ss_pred CCcceeEEEECCCCCEEEEEeC-C--CcEEEE
Q 008496 397 HQGEVNCVKWDPTGSLLASCSD-D--VTAKIW 425 (563)
Q Consensus 397 h~~~i~~~~~~~~~~~las~s~-d--g~i~iw 425 (563)
..+......|+|||+.|+-++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445668899999998775554 4 555555
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.57 E-value=7.5 Score=41.21 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=50.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEeeccCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCCceeEEee
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 354 (563)
.-++++.-+|.|+-++.+..||.|++|+........+.....|-..+.|...| |+++.+|+.+.-|. +.|.+.++|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqqfd 91 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQFD 91 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhhcc
Confidence 34677888899999999999999999986543222222222333445554433 77778888888885 3444444443
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=73.53 E-value=1.7e+02 Score=33.20 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.8
Q ss_pred CceEEEEECCCC------CEEEEeeCCCcEEEEecCC
Q 008496 216 SEVCACAWSPAG------SLLASGSGDSTARIWTIAD 246 (563)
Q Consensus 216 ~~V~~~~~sp~~------~~latgs~D~~i~iW~~~~ 246 (563)
..|.|+++.++. ++++.|+.|+++|+..+..
T Consensus 583 ~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 583 TDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 567889998865 4799999999999998763
No 477
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.29 E-value=8.4 Score=22.63 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEE
Q 008496 505 YLASGSLDKSMHIWSLKEGKIVKTY 529 (563)
Q Consensus 505 ~lasgs~dg~v~iw~~~~~~~~~~~ 529 (563)
.+..++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5677888999999999999887653
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.13 E-value=1.7e+02 Score=32.73 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.7
Q ss_pred ceeEEEECCC-CCEEEEEeCCCcEEEEeC
Q 008496 400 EVNCVKWDPT-GSLLASCSDDVTAKIWNM 427 (563)
Q Consensus 400 ~i~~~~~~~~-~~~las~s~dg~i~iwd~ 427 (563)
+...++|+|. .+.||.....|...||++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 4567899984 467999999999999998
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=77 Score=28.57 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=46.5
Q ss_pred CCCEEEEeeCC--CcEEEEECCCCceeEEeeecccCeEE--EecCCCceEEEEeCCCeEEEEEcCCCcceeeecCCCcce
Q 008496 326 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLD--VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401 (563)
Q Consensus 326 ~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i 401 (563)
+|+.+.+.+.- ..|++||+.+++....-......+.. +.-..+..+...-.++.-+.+|..+-+.+..+. ..++=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 44556665543 36899999988765543332111100 000112223333445555666665555444433 23334
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008496 402 NCVKWDPTGSLLASCSDDVTAKIWNMK 428 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg~i~iwd~~ 428 (563)
..++. |++-|..++...+++.-|.+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHH
Confidence 44443 33334444333455544543
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.55 E-value=1.2e+02 Score=30.74 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=61.9
Q ss_pred CcceeEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeecc--cCCCEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008496 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-----YVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFD 470 (563)
Q Consensus 398 ~~~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~-----~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~d 470 (563)
...+..+.|.+++.+++++ .+|.+. |....+. ....+.. -...++.+.|.+++. +..++..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~----------~~a~G~~ 347 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE----------AWAAGGS 347 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc----------EEEEECC
Confidence 3467889999999987655 556543 3333332 1111111 123478888877653 4455567
Q ss_pred CeEEEEeCCCCeEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008496 471 STVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIW 518 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~---~~h~~~i~~l~~spdg~~lasgs~dg~v~iw 518 (563)
|.+.... ..|+.-... ..-..+.+.+.|.++++.+++| .+|.|.-|
T Consensus 348 G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 348 GILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 8776653 334332221 2234568899998887777754 47766544
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.25 E-value=62 Score=37.22 Aligned_cols=143 Identities=17% Similarity=0.286 Sum_probs=84.5
Q ss_pred EEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeE-----EE
Q 008496 415 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKL-----LY 485 (563)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~-----~~ 485 (563)
-.+-|..+.+|+.+++.....+.+-...|..+..-....+.+.|.-+++|+.+. --.|.|+-+. ++.. .+
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccce
Confidence 345688899999998777777776667777776544444455554444444332 2235554332 1111 12
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC----CC---e-e-------------E----EEE-ecCCCEEEEE
Q 008496 486 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK----EG---K-I-------------V----KTY-TGNGGIFEVC 539 (563)
Q Consensus 486 ~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~----~~---~-~-------------~----~~~-~~~~~i~~l~ 539 (563)
++.-....|+++....+|+.+.+|- || .+|.+. +| + + + +.. ....+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 2222345688999888998877655 44 355432 11 1 1 1 111 1234677888
Q ss_pred EcCCCCEEEEEECCCeEEEEEe
Q 008496 540 WNKEGDKIAACFANHTVCVLDF 561 (563)
Q Consensus 540 w~~~g~~la~~~~~~~v~v~~~ 561 (563)
.+..-+.|-+=+..++|.+||+
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred eccccceeeeeccCceEEEEEc
Confidence 8777777777777888999986
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.80 E-value=1e+02 Score=31.49 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 008496 494 VYSLAFSPTGEYLASGSLDKSMHIWSLKE 522 (563)
Q Consensus 494 i~~l~~spdg~~lasgs~dg~v~iw~~~~ 522 (563)
|.+++..+..+.|.+.+.+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 88999999999999999999999999974
No 483
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.32 E-value=12 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.4
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEEecCC
Q 008496 506 LASGSLDKSMHIWSLKEGKIVKTYTGNG 533 (563)
Q Consensus 506 lasgs~dg~v~iw~~~~~~~~~~~~~~~ 533 (563)
+..++.||.|.-.|.++|+++..+....
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 4556999999999999999999887543
No 484
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.36 E-value=1.2e+02 Score=29.28 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=117.4
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEecCCCCCcCCCCCCCceEEEEEeeecccccCCCCeEEEEECCCCC-----------
Q 008496 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT----------- 287 (563)
Q Consensus 219 ~~~~~sp~~~~latgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~----------- 287 (563)
..++++|.+.+.++...-++..+||.......... ..+................|.+.|+....
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-----~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-----DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCc-----cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 47899999999888888899999997632211111 11111111000001123466677764332
Q ss_pred -EEEEEeCCCeEEEEEcCCcee------Eeecc-CCCCEE-EEEeC--CCCCEEEEee-CCCcEEEEECCCCcee--EEe
Q 008496 288 -LLATGSYDGQARIWSTNGDLK------CTLSK-HKGPIF-SLKWN--KKGDYLLTGS-CDKTAIVWDVKTEEWK--QQF 353 (563)
Q Consensus 288 -~l~sg~~dg~i~vw~~~~~~~------~~~~~-h~~~V~-~l~~~--~~~~~l~s~s-~D~~v~iwd~~~~~~~--~~~ 353 (563)
.++.++.||+|.-|...-... ..+.. ..+.|+ .|++. ..+++|+.+. ..++|.++|-.-.... ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 367789999999998532211 12222 234453 34444 3356666554 4678888874322111 001
Q ss_pred eeccc----CeEEEecCCCceEEE-------------EeCCCeEEEEEcCCCcceeeec--CCCcceeEEEECC------
Q 008496 354 EFHSG----PTLDVDWRNNVSFAT-------------SSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDP------ 408 (563)
Q Consensus 354 ~~~~~----~~~~~~~~~~~~~~~-------------~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~~~~~~------ 408 (563)
....- ....+.-.....|++ +..-|.|-+++.... .++.+. +.-..-+.|+.-|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCC
Confidence 00000 001111111122221 223356666666432 333332 2223344565543
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecccCC------CEEEEEEcc
Q 008496 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK------EIYTIRWSP 450 (563)
Q Consensus 409 ~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~p 450 (563)
.+.+|+----||+|..+|..+++.+..+....+ .++.|.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 567777666699999999999988877765433 245566644
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.81 E-value=22 Score=32.11 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEecC--CCeeEEEEecCCCEEEEEEcCCCCEEEEEECC---C---eEEEE-Eee
Q 008496 504 EYLASGSLDKSMHIWSLK--EGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---H---TVCVL-DFR 562 (563)
Q Consensus 504 ~~lasgs~dg~v~iw~~~--~~~~~~~~~~~~~i~~l~w~~~g~~la~~~~~---~---~v~v~-~~~ 562 (563)
.+|..+...+.|.+|++. ...++.+|..-+.|..+..+.-|++|++--.+ . .+++| |||
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 345444566789999987 34578888888889999999999999985322 1 45665 776
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=65.00 E-value=82 Score=30.14 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=38.2
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEecCCCe
Q 008496 471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGK 524 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs------~dg~v~iw~~~~~~ 524 (563)
..|.+||..+.+=..--.+-.+.|+++.|..+.+.++.|. ....+..||..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4588999876543333334557899999997778888775 34578899988764
No 487
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=64.66 E-value=1.4e+02 Score=28.77 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=80.3
Q ss_pred cEEEEECCCCceeEEeeecccC------eEE--EecCCC-----ceEEEEeCCCeEEEEEcCCCcceeeecCCC------
Q 008496 338 TAIVWDVKTEEWKQQFEFHSGP------TLD--VDWRNN-----VSFATSSTDNMIYVCKIGENRPIKTFAGHQ------ 398 (563)
Q Consensus 338 ~v~iwd~~~~~~~~~~~~~~~~------~~~--~~~~~~-----~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~------ 398 (563)
.+.+||+.+.+.++++.+.... ..+ ++..+. ..+++-+..+.|.++++.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778899888888877665321 122 333222 235566666788999998876544433221
Q ss_pred -------------cceeEEEECC---CCCEEEEEeCCCcEEEEeCCC-----Cce---------eeeecccCCCEEEEEE
Q 008496 399 -------------GEVNCVKWDP---TGSLLASCSDDVTAKIWNMKQ-----DKY---------VHDLREHSKEIYTIRW 448 (563)
Q Consensus 399 -------------~~i~~~~~~~---~~~~las~s~dg~i~iwd~~~-----~~~---------~~~~~~~~~~i~~~~~ 448 (563)
..+..++.+| +++.|.-+.-.+. ++|.+.+ ... +..+-........++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1244555544 4555554443321 2333221 110 0111000122334444
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----CeEEEEecCC-CCCEEEEEEcC--CCCEEEEEe
Q 008496 449 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGH-REPVYSLAFSP--TGEYLASGS 510 (563)
Q Consensus 449 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~h-~~~i~~l~~sp--dg~~lasgs 510 (563)
.+.| .++.+--..+.|..|+... ...+...... -..+.++++.+ +|.+.+..+
T Consensus 194 D~~G---------~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNG---------NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTT---------EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCC---------cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 4544 2556667788899999875 2222222222 35678899998 777666553
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.34 E-value=47 Score=33.42 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCceeEe---eccCCC----CEE-EEEeCCCCCEEEEeeCCCcEEEE-ECC
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKG----PIF-SLKWNKKGDYLLTGSCDKTAIVW-DVK 345 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h~~----~V~-~l~~~~~~~~l~s~s~D~~v~iw-d~~ 345 (563)
.+|..+-..|||+.+..-+. .++.+++...+.... .....+ .|+ ++..-..|..++.++.||-|..| |++
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 45777778899998877665 677787765432211 111111 122 12223456778999999999998 544
Q ss_pred CCc-----eeEEeeecccCeEEEecC-CCceEEEEeCCCeEEEEEcCCCcceeeecCCCcceeEEEECCCCCEEEEEeCC
Q 008496 346 TEE-----WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (563)
Q Consensus 346 ~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~las~s~d 419 (563)
.+. .++.+.....++.-+... +...|++-...|++.++.....+++..-. --..+.-+++||.+.++++- +.
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e-~~ 377 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE-DQ 377 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheee-cC
Confidence 322 122222222222222222 23456777777777666554444432211 12245668999999988654 45
Q ss_pred CcEEEEeCCCCce
Q 008496 420 VTAKIWNMKQDKY 432 (563)
Q Consensus 420 g~i~iwd~~~~~~ 432 (563)
|.|+++.+.+..+
T Consensus 378 gki~~~~l~Nr~P 390 (733)
T COG4590 378 GKIRLAQLENRNP 390 (733)
T ss_pred CceEEEEecCCCC
Confidence 7899988776544
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=62.78 E-value=44 Score=25.33 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 008496 471 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE 522 (563)
Q Consensus 471 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~spdg~~lasgs-~dg~v~iw~~~~ 522 (563)
+.|..||... +.....+- ..-+.|.++|++++|..++ ..+.|++|..++
T Consensus 36 ~~Vvyyd~~~--~~~va~g~-~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVASGF-SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE--eEEeeccC-CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3455565432 22233332 2347899999999887665 568899998753
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=62.77 E-value=1.5e+02 Score=28.57 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=116.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEcC-----Cc---eeEeecc-----CCCCEEEEEeCCCCC------------E
Q 008496 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-----GD---LKCTLSK-----HKGPIFSLKWNKKGD------------Y 329 (563)
Q Consensus 275 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-----~~---~~~~~~~-----h~~~V~~l~~~~~~~------------~ 329 (563)
..-+.|+++|.+.+-++....+...+|+.+ +. +..++.. ..+..+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345788999999998888888999999986 21 2333332 234567888875433 3
Q ss_pred EEEeeCCCcEEEEECCCCce---eEEeeec---ccCeE---EEec--CCCceEEEEeCCCeEEEEEcCCCcce--eeec-
Q 008496 330 LLTGSCDKTAIVWDVKTEEW---KQQFEFH---SGPTL---DVDW--RNNVSFATSSTDNMIYVCKIGENRPI--KTFA- 395 (563)
Q Consensus 330 l~s~s~D~~v~iwd~~~~~~---~~~~~~~---~~~~~---~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~- 395 (563)
++.++.||+|.-|...-... ...+... .+.++ .+.- ..+..+++--..++|-++|-.=.++. ..|.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998532221 1111111 12221 1111 12333444444555665543221110 0000
Q ss_pred ----CCCc-----------ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeec--ccCCCEEEEEEccCCCCCCCC
Q 008496 396 ----GHQG-----------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNP 458 (563)
Q Consensus 396 ----~h~~-----------~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~~~~ 458 (563)
..-. .|+-..-+++.+-=+.|.--|.|-+||.. +..++.+. +.-..-+.++..|..-+...
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s- 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS- 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC-
Confidence 0000 11111122222222233445678888865 34444442 12222345555554332221
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEecCCCC------CEEEEEEcC
Q 008496 459 NQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSP 501 (563)
Q Consensus 459 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~l~~sp 501 (563)
. .+|+---.||+|..||..+++.+-.+..-.+ ..+.|+|..
T Consensus 261 -g-~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 -G-ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred -C-CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 1 2566666699999999999988777754322 356777765
No 491
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.45 E-value=23 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008496 493 PVYSLAFSPTGEYLASGSLDKSMHIWS 519 (563)
Q Consensus 493 ~i~~l~~spdg~~lasgs~dg~v~iw~ 519 (563)
.|.+++.++. +++.+..-+.++||.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4777877655 899999999999984
No 492
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=62.37 E-value=3.5 Score=30.74 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=24.8
Q ss_pred hhhhhHHHHHhcCCceehhccccccCCccC
Q 008496 9 LNYLVFRYLQESGLLHSAFVLGYEAGINKC 38 (563)
Q Consensus 9 vN~Li~rYlqE~g~~~sA~~~~~E~~~~~~ 38 (563)
+|=||==||+=.||.||+-+|+-|++..+.
T Consensus 21 i~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 21 INELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 588999999999999999999999987643
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.00 E-value=21 Score=20.85 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEe
Q 008496 463 ILASASFDSTVKLWDVELGKLLYSL 487 (563)
Q Consensus 463 ~l~s~s~dg~i~iwd~~~~~~~~~~ 487 (563)
.+..++.+|.+..+|..+|+.++..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4566788999999999999887754
No 494
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=61.94 E-value=22 Score=20.21 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEE
Q 008496 535 IFEVCWNKEGDKIAACFANHTVCVL 559 (563)
Q Consensus 535 i~~l~w~~~g~~la~~~~~~~v~v~ 559 (563)
..+++.+++|+.+++=+.+.+|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4577888888877777777777664
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=61.15 E-value=2.3e+02 Score=30.19 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=72.6
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeecccCCCEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-C
Q 008496 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-L 480 (563)
Q Consensus 402 ~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~ 480 (563)
.+++.++++..+|....++.+.++...... ...+. ...++.-.|.+.+. .+ +.-.....++.... +
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-~~~~~--~~~Lt~PS~d~~g~--------vW--tv~~g~~~~l~~~~~~ 403 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-VLLDT--RPGLVAPSLDAQGY--------VW--STPASDPRGLVAWGPD 403 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc-eeecc--CCccccCcCcCCCC--------EE--EEeCCCceEEEEecCC
Confidence 678999999999888778878777655221 11111 12234444544441 11 11111123332221 1
Q ss_pred CeEEE-EecC-CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecCC-Ce---eE--EE--E-ecCCCEEEEEEcCCCCE
Q 008496 481 GKLLY-SLNG-HREPVYSLAFSPTGEYLASGS---LDKSMHIWSLKE-GK---IV--KT--Y-TGNGGIFEVCWNKEGDK 546 (563)
Q Consensus 481 ~~~~~-~~~~-h~~~i~~l~~spdg~~lasgs---~dg~v~iw~~~~-~~---~~--~~--~-~~~~~i~~l~w~~~g~~ 546 (563)
|.... .... -...|..+..|+||..+|.-. ..++|.|--+.. +. .+ .. . ...+.+.+++|..+++.
T Consensus 404 G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~l 483 (557)
T PRK13615 404 GVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDV 483 (557)
T ss_pred CceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEE
Confidence 22211 1111 235799999999998766533 245666644422 22 12 11 1 12346789999999987
Q ss_pred EEEE
Q 008496 547 IAAC 550 (563)
Q Consensus 547 la~~ 550 (563)
++.+
T Consensus 484 aVl~ 487 (557)
T PRK13615 484 ATLT 487 (557)
T ss_pred EEEe
Confidence 6766
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=60.87 E-value=2.4e+02 Score=30.23 Aligned_cols=164 Identities=10% Similarity=0.108 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCcceeeecCCCc-ceeEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-ecccCCCEEEEEEccCCCC
Q 008496 377 DNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSG 454 (563)
Q Consensus 377 d~~i~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~~~~ 454 (563)
+|.+...+-....++.-..+..+ .+.+++.++++..+|....|+. .+|-...+..... +. ...++.-.|.+.+.
T Consensus 320 ~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~--g~~Lt~PS~d~~g~- 395 (573)
T PRK13614 320 DGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTS--GSTLTRPSFSPQDW- 395 (573)
T ss_pred CCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCCc-EEEEecCCCcceeeec--CCCccCCcccCCCC-
Confidence 44443333223334444444434 6778899999999888877762 3443222222111 22 12244445555442
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCC-CCeE------EEEecCCCC-CEEEEEEcCCCCEEEE-EeCCCc--EEEEecC--
Q 008496 455 TNNPNQQLILASASFDSTVKLWDVE-LGKL------LYSLNGHRE-PVYSLAFSPTGEYLAS-GSLDKS--MHIWSLK-- 521 (563)
Q Consensus 455 ~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~------~~~~~~h~~-~i~~l~~spdg~~las-gs~dg~--v~iw~~~-- 521 (563)
.+.+-.+..+.|....-. ++.. ........+ .|..+..|+||..+|. .+.+|. |.|=-+.
T Consensus 396 -------vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~ 468 (573)
T PRK13614 396 -------VWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRN 468 (573)
T ss_pred -------EEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeC
Confidence 121111111122222211 1110 111122333 4999999999977664 434554 6664442
Q ss_pred -CCeeEEE-----EecCCCEEEEEEcCCCCEEEEEE
Q 008496 522 -EGKIVKT-----YTGNGGIFEVCWNKEGDKIAACF 551 (563)
Q Consensus 522 -~~~~~~~-----~~~~~~i~~l~w~~~g~~la~~~ 551 (563)
.|..... ......+.+++|..++..++.+.
T Consensus 469 ~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 469 EDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred CCCCeEEccCceecccCCCcceeEEcCCCEEEEEec
Confidence 3431111 11134678999999998777654
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=59.66 E-value=2.1e+02 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEee
Q 008496 534 GIFEVCWNKEGDKIAACFANHTVCVLDFR 562 (563)
Q Consensus 534 ~i~~l~w~~~g~~la~~~~~~~v~v~~~~ 562 (563)
.|..+++++..+.|.+...++.+.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38889999998999999999999999984
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.47 E-value=5 Score=36.38 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=40.7
Q ss_pred CcCccchhhhhHHHHHhcCCceehhccccccCCccCCCCCCCCC-chhHHHHHHhh
Q 008496 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVP-PRALITFVQKG 57 (563)
Q Consensus 3 ~its~evN~Li~rYlqE~g~~~sA~~~~~E~~~~~~~~~~~~ip-~gaLv~~~qKg 57 (563)
++..+++|-||--||---||..+|-+|++|+.|..+.+.-..+- .-....+|+.|
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G 78 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEG 78 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhc
Confidence 57789999999999999999999999999999997532211222 33334445655
No 499
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=58.87 E-value=2.1e+02 Score=28.91 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred CCCEEEEEeCCCcEE--EEeCCCCceeeeecccCCCEEEEEEccCCC----CCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008496 409 TGSLLASCSDDVTAK--IWNMKQDKYVHDLREHSKEIYTIRWSPTGS----GTNNPNQQLILASASFDSTVKLWDVELGK 482 (563)
Q Consensus 409 ~~~~las~s~dg~i~--iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~----~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 482 (563)
.+.+|-.|..+|.++ ++|+..-.... .-..-+.+..|+|--. ...++....+++-+...|. |+.++.|.
T Consensus 482 en~~lGvG~~~g~vKiSLFdiSdl~~Pk---Ev~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~ 556 (603)
T COG4880 482 ENRLLGVGAYQGGVKISLFDISDLAAPK---EVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS 556 (603)
T ss_pred CCcEEEeecccCCceEEEEeccCCCCch---hhhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc
Confidence 456677787888665 46654322111 1112233345555321 1123334455555666665 45555565
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCCeeEE
Q 008496 483 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 527 (563)
Q Consensus 483 ~~~~~~~h~~~i~~l~~spdg~~lasgs~dg~v~iw~~~~~~~~~ 527 (563)
.+..-..|..++...-|-.|--|++.++ .|.++|-.+++++.
T Consensus 557 kl~k~~e~k~na~RA~fi~dylY~vg~~---ev~~ldenswe~Vg 598 (603)
T COG4880 557 KLRKRAERKLNADRAFFIKDYLYLVGGN---EVWKLDENSWEVVG 598 (603)
T ss_pred eeeehhhhcccceeeEEecceEEEeccc---eeEEeccchHhhhh
Confidence 5555456777777777776654555433 46666655555443
No 500
>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]
Probab=58.68 E-value=5.1 Score=37.77 Aligned_cols=15 Identities=40% Similarity=0.766 Sum_probs=14.0
Q ss_pred hhhhHHHHHhcCCce
Q 008496 10 NYLVFRYLQESGLLH 24 (563)
Q Consensus 10 N~Li~rYlqE~g~~~ 24 (563)
|||||+||.-+||..
T Consensus 155 nYlVyahLkrlGfiv 169 (364)
T KOG4772|consen 155 NYLVYAHLKRLGFIV 169 (364)
T ss_pred HHHHHHHHHhcceee
Confidence 999999999999964
Done!